Psyllid ID: psy9159

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MYSKLFVLSLFQFAFVQFGECAELFAVNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLSTTYSYKR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHcccccEEcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccEHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MYSKLFVLSLFQFAFVQFGECAELfavnnskypeidRLLYYGKKDDKAKAYNLTMElnnkqpndpDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMElapnnsntqkwYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIqmapkdftlyslkgRYQYEISKLSFFERKIAVLIVsdldeptaEDAIANCLkaeelapapwkeNQLLIAKCYIEAGEYAKAVQWLdkakaipvvsyeshdlsttysykr
Flexible Loop (DISEMBL)
MYSKLFVLSLFQFAFVQFGECAELfavnnskypeIDRLLYYGKKDDKAKAYNLTMelnnkqpndpDVLYRLAKACHCLYdikrrendkeaSEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAeelapapwKENQLLIAKCYIEAGEYAKAVQWLDKAkaipvvsyeshdlsttysykr
Low Complexity Region (SEG)
MYSKLFVLSLFQFAFVQFGECAELFAVNNSKYPEIDRLLYYGkkddkakaYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLSTTYSYKR
Disordered region (IsUnstruct)
***KLFVLSLFQFAFVQFGECAELFAVNNSKYPEIDRLLYYGKKDDKAKAYNLTMEL*******PDVLYRLAKACHCLYDIKRR*******EKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES***********
Disordered Region (DISOPRED)
***KLFVLSLFQFAFVQFGECAELFAVNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLST**SYK*
Disordered Region (DISEMBL)
MYSKLFVLSLFQFAFVQFGECAELFAVNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY*************
Disordered Region (DISPRO)
MYSKLFVLSLFQFAFVQFGECAELFAVNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLSTTYSY**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYSKLFVLSLFQFAFVQFGECAELFAVNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLSTTYSYKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q8BSE0	410	Regulator of microtubule	yes	N/A	0.787	0.497	0.333	1e-28
Q498D5	412	Regulator of microtubule	yes	N/A	0.776	0.487	0.328	2e-28
Q0P4W3	412	Regulator of microtubule	yes	N/A	0.795	0.5	0.320	3e-27
Q3UJU9	470	Regulator of microtubule	no	N/A	0.787	0.434	0.322	1e-25
Q66H15	471	Regulator of microtubule	no	N/A	0.787	0.433	0.312	2e-25
Q5EAU9	463	Regulator of microtubule	N/A	N/A	0.814	0.455	0.316	2e-25
Q2TBQ7	410	Regulator of microtubule	no	N/A	0.776	0.490	0.313	7e-25
Q5R6Z1	470	Regulator of microtubule	yes	N/A	0.772	0.425	0.330	2e-24
Q96LZ7	410	Regulator of microtubule	no	N/A	0.764	0.482	0.308	2e-24
Q1JQC5	471	Regulator of microtubule	no	N/A	0.779	0.428	0.328	3e-24

>sp|Q8BSE0|RMD2_MOUSE Regulator of microtubule dynamics protein 2 OS=Mus musculus GN=Rmdn2 PE=2 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 114/207 (55%), Gaps = 3/207 (1%)

Query: 44  KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAK 103
           +  K +++ L  +   K   + + L+RLA+A   +YD+     +K+    Y   G    +
Sbjct: 193 ESHKMESFELLCDHKEKFSEETEFLWRLARAYGDMYDLSTSTQEKK---HYANIGKTLGE 249

Query: 104 KAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLK 163
           +A+  AP N +   WY +  G   +F+ L+ KI CG +F+  +  AIQ+ P++  LY LK
Sbjct: 250 RAITRAPMNGHCHLWYAVLCGYVSEFEGLQNKINCGHLFKKHLEIAIQLLPEEPLLYYLK 309

Query: 164 GRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYI 223
           GRY Y +S+LS+ E+K+A  +  ++   T  +A+ N LK EEL P     N +  AKCY+
Sbjct: 310 GRYCYTVSRLSWIEKKMAATLFGEIPYSTVHEALHNFLKTEELQPGYSMSNYMYTAKCYV 369

Query: 224 EAGEYAKAVQWLDKAKAIPVVSYESHD 250
           E GE  +A ++ + A  +PVV+ E  D
Sbjct: 370 ELGEPQEACKFCNLALLLPVVTKEDKD 396

Mus musculus (taxid: 10090)

>sp|Q498D5|RMD2_RAT Regulator of microtubule dynamics protein 2 OS=Rattus norvegicus GN=Rmdn2 PE=2 SV=1

 Score =  125 bits (315), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 114/204 (55%), Gaps = 3/204 (1%)

Query: 47  KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM 106
           K +++ L  +   K   + + L+RL +A   +YD+     +K+    Y   G    ++A+
Sbjct: 198 KMESFELLCDHKEKFSEEIEFLWRLVRAYGDMYDLSTNTQEKK---HYANVGKTLGERAI 254

Query: 107 ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY 166
             AP N +   WY +  G   +F+ L+ KI CG +F+  ++ AIQ+ P++  LY LKGRY
Sbjct: 255 TRAPMNGHCHLWYALLCGYVSEFEGLQNKINCGHLFKKHLDIAIQLLPEEPVLYYLKGRY 314

Query: 167 QYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAG 226
            Y +SKLS+ E+K+A  +  ++   T  +A+ N LK EEL P     N + +AKCY++ G
Sbjct: 315 CYTVSKLSWIEKKMAATLFGEIPSSTVHEALHNFLKTEELQPGYSVSNYMYVAKCYVDLG 374

Query: 227 EYAKAVQWLDKAKAIPVVSYESHD 250
           E  +A ++ + A  +P+V+ E  D
Sbjct: 375 ESREAWKFCNLALLLPIVTKEDKD 398

Rattus norvegicus (taxid: 10116)

>sp|Q0P4W3|RMD2_XENTR Regulator of microtubule dynamics protein 2 OS=Xenopus tropicalis GN=rmdn2 PE=2 SV=1

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 122/209 (58%), Gaps = 3/209 (1%)

Query: 42  GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
           G + DK   + + ++   K  N  + L+RLA+A   ++D+    +D E  + Y   G   
Sbjct: 193 GSEPDKQDTFRMMLDNKEKYGNKVEFLWRLARAYGDMFDMT---SDVEEKKNYAANGKSI 249

Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYS 161
           A KA++L   ++ + +W+ I  G   +++S+++KIK G +F++ ++KAI++ PKD   Y 
Sbjct: 250 AGKAIQLEDCSAESHRWFAIMCGYLSEYESVQDKIKNGYLFKEHLDKAIELDPKDPLQYY 309

Query: 162 LKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC 221
           L GR+ Y +S+LS+ ERK+A  +  +    T ++A+ N LK EE+ P   K N + +AKC
Sbjct: 310 LLGRWCYAVSQLSWIERKVAAALFGNPPTATIQEALQNFLKVEEMHPGYSKYNYVFLAKC 369

Query: 222 YIEAGEYAKAVQWLDKAKAIPVVSYESHD 250
           Y + G+ + A+++ D+A A+   + E  D
Sbjct: 370 YKDLGQKSVALKYCDEASAMTAANKEDKD 398

Xenopus tropicalis (taxid: 8364)

>sp|Q3UJU9|RMD3_MOUSE Regulator of microtubule dynamics protein 3 OS=Mus musculus GN=Rmdn3 PE=1 SV=2

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 120/211 (56%), Gaps = 7/211 (3%)

Query: 39  LYYGKKDDKAKAYNLTMELNNKQP--NDPDVLYRLAKACHCLYDIKRRENDKEASEKYIL 96
           L+ G K DK + + L   LNNK    +  D L+RLA+A   + D+   E+ K++   Y L
Sbjct: 249 LHQGSKQDKREGFQLL--LNNKLAYGSRQDFLWRLARAYSDMSDLTEEESGKKS---YAL 303

Query: 97  QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD 156
            G E A+ A++    ++    WY +  G   + + + ++I+ G  F++ ++KAI++ P+D
Sbjct: 304 NGKEEAEAALKKGDESAACHLWYAVLCGQLAEHEGISKRIQSGFSFKEHVDKAIELQPED 363

Query: 157 FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQL 216
              + L GR+ Y++S L++ E+K A  +       T +DA+ + LKAEEL P   K  ++
Sbjct: 364 PRGHFLLGRWCYQVSHLNWLEKKTATALFESPLSATVQDALQSFLKAEELQPGFSKAGRV 423

Query: 217 LIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247
            I+KCY E G+ ++A +W+  A+ +P V+ E
Sbjct: 424 YISKCYRELGKNSEARKWMKLAQELPDVTNE 454

May participate in differentiation and apoptosis of keratinocytes. Overexpression induces apoptosis.

Mus musculus (taxid: 10090)

>sp|Q66H15|RMD3_RAT Regulator of microtubule dynamics protein 3 OS=Rattus norvegicus GN=Rmdn3 PE=2 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 123/211 (58%), Gaps = 7/211 (3%)

Query: 39  LYYGKKDDKAKAYNLTMELNNKQP--NDPDVLYRLAKACHCLYDIKRRENDKEASEKYIL 96
           L+ G + +K + + L   LNNK    +  D L+RLA+A   + ++   E++K++   Y L
Sbjct: 249 LHQGSEQNKQEGFQLL--LNNKLAYGSRQDFLWRLARAYSDMTELTEEESEKKS---YAL 303

Query: 97  QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD 156
            G E A+ A++    ++ +  WY +  G   + + + ++I+ G  F++ ++KAI++ P+D
Sbjct: 304 NGKEEAEAALKKGDESAASHLWYAVLCGQLAEHEGISKRIQSGFSFKEHVDKAIELQPED 363

Query: 157 FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQL 216
              + L GR+ Y++S LS+ E+K A  +       T +DA+ + LKAEEL P   K  ++
Sbjct: 364 PRGHFLLGRWCYQVSHLSWLEKKTATALFESPLSATVQDALQSFLKAEELQPGFSKAGRV 423

Query: 217 LIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247
            I+KCY E G+ ++A +WL+ A+ +P ++ E
Sbjct: 424 YISKCYRELGKNSEARKWLNLAQELPNITNE 454

May participate in differentiation and apoptosis of keratinocytes. Overexpression induces apoptosis.

Rattus norvegicus (taxid: 10116)

>sp|Q5EAU9|RMD3_XENLA Regulator of microtubule dynamics protein 3 OS=Xenopus laevis GN=rmdn3 PE=2 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 116/218 (53%), Gaps = 7/218 (3%)

Query: 39  LYYGKKDDKAKAYNLTMELNNKQ--PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYIL 96
           L+ G  + + + + L   LNNK    +  + L+RLA++   +  I     D +  + +  
Sbjct: 236 LHSGSTEQQREGFQLL--LNNKLLYGDHQEFLWRLARSYSDMCTIA---EDAQEKKSFAS 290

Query: 97  QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD 156
           +G E A+ A++    N+   KW+ I  G   + + ++++I+ G +F++ + KAI + P D
Sbjct: 291 EGKEEAEAALQKGDQNAECHKWFAILCGQLSEHEGIQKRIQTGYLFKEHIEKAISLKPGD 350

Query: 157 FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQL 216
              Y L GR+ YE+S L + ERK A  +  +    T  +A+ N LKAE+L P   K  ++
Sbjct: 351 ARCYYLLGRWCYEVSNLGWLERKTASALYENPPTATVHEALQNFLKAEDLTPGFSKAARV 410

Query: 217 LIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLSTT 254
           LIAKCY + G  A A  WL  A  +P V+ E  + +TT
Sbjct: 411 LIAKCYKDLGNNATAAHWLKLAADLPNVTQEDRESTTT 448

Xenopus laevis (taxid: 8355)

>sp|Q2TBQ7|RMD2_BOVIN Regulator of microtubule dynamics protein 2 OS=Bos taurus GN=RMDN2 PE=2 SV=2

 Score =  114 bits (285), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 112/204 (54%), Gaps = 3/204 (1%)

Query: 47  KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM 106
           K +++ L  +   K  ++ + ++R A+A   +Y++     +K+    Y   G    +KA+
Sbjct: 196 KVESFELLCDHKEKFRDEIEFIWRFARAYGDMYELSTNIQEKK---HYANIGKTLGEKAI 252

Query: 107 ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY 166
             AP N     WY +  G   +F+ L+ KI  G  F++ ++KAI+  P++  LY LKGRY
Sbjct: 253 MRAPKNGYCHLWYAVLCGYVSEFEGLQNKINYGYRFKEHLDKAIEFLPEEPFLYYLKGRY 312

Query: 167 QYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAG 226
            Y +SKLS+ ERK+A  +  ++   T ++A+ N LK EEL P   K N + +AKCY +  
Sbjct: 313 CYAVSKLSWIERKMAATLFGNIPSSTVQEALQNFLKVEELQPGFSKSNYMFMAKCYADLN 372

Query: 227 EYAKAVQWLDKAKAIPVVSYESHD 250
           +   A+++ + A  +P ++ E  D
Sbjct: 373 QIDSAMKFCNLAVLLPCITKEDKD 396

Bos taurus (taxid: 9913)

>sp|Q5R6Z1|RMD3_PONAB Regulator of microtubule dynamics protein 3 OS=Pongo abelii GN=RMDN3 PE=2 SV=1

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 117/209 (55%), Gaps = 9/209 (4%)

Query: 43  KKDDKAKAYNLTMELNNKQ--PNDPDVLYRLAKACHCLYDIKRRENDKEASEK--YILQG 98
           + D++ K     + LNNK    +  D L+RLA+A   + ++      +E SEK  Y L G
Sbjct: 250 RGDEQGKREGFQLLLNNKLVYGSRQDFLWRLARAYSDMCELT-----EEVSEKKSYALDG 304

Query: 99  IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT 158
            E A+ A+E    +++   WY +  G   + +S++ +I+ G  F++ ++KAI + P++  
Sbjct: 305 KEEAEAALEKGDESADCHLWYAVLCGQLAEHESIQRRIQSGFSFKEHVDKAIALQPENPM 364

Query: 159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI 218
            Y L GR+ Y++S LS+ E+K A  ++      T EDA+ + LKAEEL P   K  ++ I
Sbjct: 365 AYFLLGRWCYQVSHLSWLEKKTATALLESPLSATVEDALQSFLKAEELQPGFSKAGRVYI 424

Query: 219 AKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247
           +KCY E G+ ++A  W+  A  +P V+ E
Sbjct: 425 SKCYRELGKNSEARWWMKLALELPDVTKE 453

May participate in differentiation and apoptosis of keratinocytes. Overexpression induces apoptosis.

Pongo abelii (taxid: 9601)

>sp|Q96LZ7|RMD2_HUMAN Regulator of microtubule dynamics protein 2 OS=Homo sapiens GN=RMDN2 PE=1 SV=2

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 114/201 (56%), Gaps = 3/201 (1%)

Query: 47  KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM 106
           K++++ L  +   K  ++ + ++R A+A   +Y++     +K+    Y   G   +++A+
Sbjct: 196 KSESFELLRDHKEKFRDEIEFMWRFARAYGDMYELSTNTQEKK---HYANIGKTLSERAI 252

Query: 107 ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY 166
             AP N +   WY +  G   +F+ L+ KI  G +F++ ++ AI++ P++  LY LKGRY
Sbjct: 253 NRAPMNGHCHLWYAVLCGYVSEFEGLQNKINYGHLFKEHLDIAIKLLPEEPFLYYLKGRY 312

Query: 167 QYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAG 226
            Y +SKLS+ E+K+A  +   +   T ++A+ N LKAEEL P     N + +AKCY +  
Sbjct: 313 CYTVSKLSWIEKKMAATLFGKIPSSTVQEALHNFLKAEELCPGYSNPNYMYLAKCYTDLE 372

Query: 227 EYAKAVQWLDKAKAIPVVSYE 247
           E   A+++ + A  +P V+ E
Sbjct: 373 ENQNALKFCNLALLLPTVTKE 393

Homo sapiens (taxid: 9606)

>sp|Q1JQC5|RMD3_BOVIN Regulator of microtubule dynamics protein 3 OS=Bos taurus GN=RMDN3 PE=2 SV=1

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 118/213 (55%), Gaps = 11/213 (5%)

Query: 39  LYYGKKDDKAKAYNLTMELNNK--QPNDPDVLYRLAKACHCLYDIKRRENDKEASEK--Y 94
           L+ G +  K + + L   LNNK    +  D L+RLA+A   + ++      +EASEK  Y
Sbjct: 249 LHQGSEQGKREGFQLL--LNNKLVHGSRQDFLWRLARAYSDMCELT-----EEASEKRSY 301

Query: 95  ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAP 154
            L G E A+ A+E    N+   +WY +  G   + + ++ +I+ G  F++ ++KAI + P
Sbjct: 302 ALSGKEEAEVALEKGNENAECHQWYAVLCGQLAEHEGIQRRIQSGFSFKEHVDKAIALKP 361

Query: 155 KDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKEN 214
           ++   + L GR+ Y++S LS+ E+K A  +       T +DA+++ LKAEEL P   K  
Sbjct: 362 ENPMAHFLLGRWCYQVSHLSWLEKKTATALSESPLGATVQDALSSFLKAEELQPGFSKAG 421

Query: 215 QLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247
           ++ I KCY E G+  +A +W+  A  +P V+ E
Sbjct: 422 RIYICKCYKELGKNPEAKEWMKLALELPNVTKE 454

May participate in differentiation and apoptosis of keratinocytes. Overexpression induces apoptosis.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
193671787	378	PREDICTED: regulator of microtubule dyna	0.806	0.552	0.394	2e-37
405952807	338	Regulator of microtubule dynamics protei	0.822	0.630	0.359	5e-33
449283210	401	Regulator of microtubule dynamics protei	0.795	0.513	0.349	8e-29
260803826	466	hypothetical protein BRAFLDRAFT_120481 [	0.872	0.484	0.313	1e-28
449496827	418	PREDICTED: regulator of microtubule dyna	0.795	0.492	0.344	1e-28
148706539	418	expressed sequence AW061290, isoform CRA	0.787	0.488	0.333	5e-27
41235741	410	regulator of microtubule dynamics protei	0.787	0.497	0.333	7e-27
148706540	413	expressed sequence AW061290, isoform CRA	0.787	0.493	0.333	8e-27
149050616	420	similar to hypothetical protein FLJ32954	0.776	0.478	0.328	1e-26
81295355	412	regulator of microtubule dynamics protei	0.776	0.487	0.328	1e-26

>gi|193671787|ref|XP_001949158.1| PREDICTED: regulator of microtubule dynamics protein 1-like isoform 1 [Acyrthosiphon pisum] gi|328720239|ref|XP_003246983.1| PREDICTED: regulator of microtubule dynamics protein 1-like isoform 2 [Acyrthosiphon pisum]

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/213 (39%), Positives = 138/213 (64%), Gaps = 4/213 (1%)

Query: 32  YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCL--YDIKRRENDKE 89
           + ++D L + G  +DK KAY + ++LN ++ +D +VL+RLAK+C  +  Y I  ++N  E
Sbjct: 142 FDQVDEL-FEGSDEDKLKAYEILLQLNEERTDDIEVLWRLAKSCQFVSKYYIAAKKN-LE 199

Query: 90  ASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKA 149
            S+  I +G++++K A+E+ P N N  KW+ IC GA GQ  S KEKI+ G +F++ +N+A
Sbjct: 200 KSKSVIDEGVKWSKHALEMYPGNCNAHKWFAICSGARGQLGSTKEKIEGGYIFQNHINEA 259

Query: 150 IQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA 209
           I++  +D TLY LKG+ +YE++ LS F+R+IA  +  ++ + T  +AI   LK +  +P 
Sbjct: 260 IKINSRDPTLYYLKGKLEYEVAVLSSFDRRIASWLYGEVPKGTIPEAIELFLKFQRESPI 319

Query: 210 PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242
             K+  L +AKCYI   EY  AV WL+++  +P
Sbjct: 320 QLKDCHLHLAKCYIAKNEYETAVNWLEQSLQLP 352

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405952807|gb|EKC20574.1| Regulator of microtubule dynamics protein 2 [Crassostrea gigas]

 Score =  147 bits (371), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 77/214 (35%), Positives = 128/214 (59%), Gaps = 1/214 (0%)

Query: 32  YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEAS 91
           Y  +D+L + G  ++K KAY +     +K   D +  +RLAK+ + L  I+    + E  
Sbjct: 91  YGGVDKL-FDGTDEEKIKAYEMLQNNRDKFEGDVEYCWRLAKSTYQLSQIEGSRGELEKK 149

Query: 92  EKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ 151
           +K +    + ++KA+ +    +N  KW+ I +G+ G ++S +EKIK G VF++ + +AIQ
Sbjct: 150 KKLVYASKDLSQKAVAMDEKCANAHKWFAITLGSIGDYESTQEKIKNGYVFKEHIERAIQ 209

Query: 152 MAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW 211
           + P+D + + L GR+ Y +  LS+ ERK A  + +     TA++A+ + L+A+ L P  W
Sbjct: 210 LNPQDPSNHHLLGRWCYGVYMLSWIERKAAATLFATPPTSTAQEALTHFLEADRLNPGKW 269

Query: 212 KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS 245
           KEN L +AKCY +  +Y +  +WLDKA AIPVVS
Sbjct: 270 KENLLYVAKCYYQMSQYKEMTEWLDKAAAIPVVS 303

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|449283210|gb|EMC89891.1| Regulator of microtubule dynamics protein 2, partial [Columba livia]

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 126/209 (60%), Gaps = 3/209 (1%)

Query: 39  LYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG 98
           L+ G +DDK + + L +E + K  N  D L+RLA+A   L+++     D E   KY+  G
Sbjct: 196 LHKGSEDDKKEGFRLLLEKDEKYENCADFLWRLARAYGDLFEMT---TDAEEKRKYVSDG 252

Query: 99  IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT 158
              A+KA++L   ++ + +W+ I  G   QF+S++ KI+ G +F++ ++KAI++ P+D  
Sbjct: 253 KIKAEKAVQLDARSAESHQWFAIMCGYMSQFESVQNKIRNGYLFKEHLDKAIELKPQDPF 312

Query: 159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI 218
           LY L GR+ Y +++LS+ E+K+A  +       T E+A+ + LKAEE+ P   K N + +
Sbjct: 313 LYYLNGRWCYSVAQLSWIEKKVAAALFGTPPTSTVEEALQHFLKAEEMHPGYSKYNYVYL 372

Query: 219 AKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247
           AKCY + G+   A+++ D A +I  V+ E
Sbjct: 373 AKCYKDLGQKNNALKYCDSALSILSVTNE 401

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260803826|ref|XP_002596790.1| hypothetical protein BRAFLDRAFT_120481 [Branchiostoma floridae] gi|229282050|gb|EEN52802.1| hypothetical protein BRAFLDRAFT_120481 [Branchiostoma floridae]

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 130/230 (56%), Gaps = 4/230 (1%)

Query: 14  AFVQFGECAELFAVNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAK 73
           A V F E A       +    +D L + G   +K +AYN+ ++L  K     +VL+RL++
Sbjct: 64  AAVTFDEGALQLTALEASLVRVDTL-HNGSLQNKEEAYNMLVQLKEKHSGSAEVLWRLSR 122

Query: 74  ACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLK 133
           +    +D    E D +  +    Q    A+ A+ +  N+++  KW+ I +G+  +F S++
Sbjct: 123 SMMAKFD---GEADPQKRQDLCFQAKGLAEVALAIDANSADAHKWFAIALGSCSEFLSVQ 179

Query: 134 EKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTA 193
           +KIK G  F++ + +A+++ P D T++ L GR+ YE++ LS+ ERK+A  + +     + 
Sbjct: 180 DKIKDGYKFKEHIERALELRPNDATVHHLLGRWCYEVTMLSWVERKVASALFAAPPNSSV 239

Query: 194 EDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV 243
           ++A+ + L+AE++ P  +K N L IAKCYI+  +Y  A  WL+KA   P+
Sbjct: 240 DEALEHFLEAEDIEPGFYKANSLYIAKCYIQNSDYCNATLWLEKALQQPI 289

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449496827|ref|XP_002191354.2| PREDICTED: regulator of microtubule dynamics protein 2 [Taeniopygia guttata]

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 125/209 (59%), Gaps = 3/209 (1%)

Query: 39  LYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG 98
           L+ G +DDK + ++L +E ++K  N  D L+R A+A   L+++     D E   KY+  G
Sbjct: 196 LHKGSEDDKKEGFSLLLEKDDKYGNSVDFLWRFARAYGDLFEMT---TDAEEKRKYVTDG 252

Query: 99  IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT 158
              A+KA++L   ++ + +W+ I  G   QF+S++ KI+ G +F++ ++KAI++ P+D  
Sbjct: 253 KIKAEKAVQLDAGSAESHQWFAIMCGYMSQFESIQNKIRNGYLFKEHLDKAIELKPQDPF 312

Query: 159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI 218
           LY L GR+ Y +++LS+ E+ +A  +       T E+A+ N LKAEE+ P   K N + +
Sbjct: 313 LYYLNGRWCYSVAQLSWLEKTVAAALFGTPPTSTVEEALQNFLKAEEMHPGYSKCNYVYL 372

Query: 219 AKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247
           AKCY + G+   A++  D A +I  V+ E
Sbjct: 373 AKCYKDLGQKNNALKCCDSALSILSVTNE 401

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148706539|gb|EDL38486.1| expressed sequence AW061290, isoform CRA_a [Mus musculus]

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 114/207 (55%), Gaps = 3/207 (1%)

Query: 44  KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAK 103
           +  K +++ L  +   K   + + L+RLA+A   +YD+     +K+    Y   G    +
Sbjct: 193 ESHKMESFELLCDHKEKFSEETEFLWRLARAYGDMYDLSTSTQEKK---HYANIGKTLGE 249

Query: 104 KAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLK 163
           +A+  AP N +   WY +  G   +F+ L+ KI CG +F+  +  AIQ+ P++  LY LK
Sbjct: 250 RAITRAPMNGHCHLWYAVLCGYVSEFEGLQNKINCGHLFKKHLEIAIQLLPEEPLLYYLK 309

Query: 164 GRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYI 223
           GRY Y +S+LS+ E+K+A  +  ++   T  +A+ N LK EEL P     N +  AKCY+
Sbjct: 310 GRYCYTVSRLSWIEKKMAATLFGEIPYSTVHEALHNFLKTEELQPGYSMSNYMYTAKCYV 369

Query: 224 EAGEYAKAVQWLDKAKAIPVVSYESHD 250
           E GE  +A ++ + A  +PVV+ E  D
Sbjct: 370 ELGEPQEACKFCNLALLLPVVTKEDKD 396

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|41235741|ref|NP_958749.1| regulator of microtubule dynamics protein 2 [Mus musculus] gi|81874985|sp|Q8BSE0.1|RMD2_MOUSE RecName: Full=Regulator of microtubule dynamics protein 2; Short=RMD-2; Short=mRMD-2; AltName: Full=Protein FAM82A1 gi|26330065|dbj|BAC28771.1| unnamed protein product [Mus musculus] gi|74228224|dbj|BAE23985.1| unnamed protein product [Mus musculus]

 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 114/207 (55%), Gaps = 3/207 (1%)

Query: 44  KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAK 103
           +  K +++ L  +   K   + + L+RLA+A   +YD+     +K+    Y   G    +
Sbjct: 193 ESHKMESFELLCDHKEKFSEETEFLWRLARAYGDMYDLSTSTQEKK---HYANIGKTLGE 249

Query: 104 KAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLK 163
           +A+  AP N +   WY +  G   +F+ L+ KI CG +F+  +  AIQ+ P++  LY LK
Sbjct: 250 RAITRAPMNGHCHLWYAVLCGYVSEFEGLQNKINCGHLFKKHLEIAIQLLPEEPLLYYLK 309

Query: 164 GRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYI 223
           GRY Y +S+LS+ E+K+A  +  ++   T  +A+ N LK EEL P     N +  AKCY+
Sbjct: 310 GRYCYTVSRLSWIEKKMAATLFGEIPYSTVHEALHNFLKTEELQPGYSMSNYMYTAKCYV 369

Query: 224 EAGEYAKAVQWLDKAKAIPVVSYESHD 250
           E GE  +A ++ + A  +PVV+ E  D
Sbjct: 370 ELGEPQEACKFCNLALLLPVVTKEDKD 396

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148706540|gb|EDL38487.1| expressed sequence AW061290, isoform CRA_b [Mus musculus]

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 114/207 (55%), Gaps = 3/207 (1%)

Query: 44  KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAK 103
           +  K +++ L  +   K   + + L+RLA+A   +YD+     +K+    Y   G    +
Sbjct: 196 ESHKMESFELLCDHKEKFSEETEFLWRLARAYGDMYDLSTSTQEKK---HYANIGKTLGE 252

Query: 104 KAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLK 163
           +A+  AP N +   WY +  G   +F+ L+ KI CG +F+  +  AIQ+ P++  LY LK
Sbjct: 253 RAITRAPMNGHCHLWYAVLCGYVSEFEGLQNKINCGHLFKKHLEIAIQLLPEEPLLYYLK 312

Query: 164 GRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYI 223
           GRY Y +S+LS+ E+K+A  +  ++   T  +A+ N LK EEL P     N +  AKCY+
Sbjct: 313 GRYCYTVSRLSWIEKKMAATLFGEIPYSTVHEALHNFLKTEELQPGYSMSNYMYTAKCYV 372

Query: 224 EAGEYAKAVQWLDKAKAIPVVSYESHD 250
           E GE  +A ++ + A  +PVV+ E  D
Sbjct: 373 ELGEPQEACKFCNLALLLPVVTKEDKD 399

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149050616|gb|EDM02789.1| similar to hypothetical protein FLJ32954 [Rattus norvegicus]

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 114/204 (55%), Gaps = 3/204 (1%)

Query: 47  KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM 106
           K +++ L  +   K   + + L+RL +A   +YD+     +K+    Y   G    ++A+
Sbjct: 198 KMESFELLCDHKEKFSEEIEFLWRLVRAYGDMYDLSTNTQEKK---HYANVGKTLGERAI 254

Query: 107 ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY 166
             AP N +   WY +  G   +F+ L+ KI CG +F+  ++ AIQ+ P++  LY LKGRY
Sbjct: 255 TRAPMNGHCHLWYALLCGYVSEFEGLQNKINCGHLFKKHLDIAIQLLPEEPVLYYLKGRY 314

Query: 167 QYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAG 226
            Y +SKLS+ E+K+A  +  ++   T  +A+ N LK EEL P     N + +AKCY++ G
Sbjct: 315 CYTVSKLSWIEKKMAATLFGEIPSSTVHEALHNFLKTEELQPGYSVSNYMYVAKCYVDLG 374

Query: 227 EYAKAVQWLDKAKAIPVVSYESHD 250
           E  +A ++ + A  +P+V+ E  D
Sbjct: 375 ESREAWKFCNLALLLPIVTKEDKD 398

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|81295355|ref|NP_001032277.1| regulator of microtubule dynamics protein 2 [Rattus norvegicus] gi|123795667|sp|Q498D5.1|RMD2_RAT RecName: Full=Regulator of microtubule dynamics protein 2; Short=RMD-2; AltName: Full=Protein FAM82A1 gi|71682218|gb|AAI00262.1| Family with sequence similarity 82, member A [Rattus norvegicus]

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 114/204 (55%), Gaps = 3/204 (1%)

Query: 47  KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM 106
           K +++ L  +   K   + + L+RL +A   +YD+     +K+    Y   G    ++A+
Sbjct: 198 KMESFELLCDHKEKFSEEIEFLWRLVRAYGDMYDLSTNTQEKK---HYANVGKTLGERAI 254

Query: 107 ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY 166
             AP N +   WY +  G   +F+ L+ KI CG +F+  ++ AIQ+ P++  LY LKGRY
Sbjct: 255 TRAPMNGHCHLWYALLCGYVSEFEGLQNKINCGHLFKKHLDIAIQLLPEEPVLYYLKGRY 314

Query: 167 QYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAG 226
            Y +SKLS+ E+K+A  +  ++   T  +A+ N LK EEL P     N + +AKCY++ G
Sbjct: 315 CYTVSKLSWIEKKMAATLFGEIPSSTVHEALHNFLKTEELQPGYSVSNYMYVAKCYVDLG 374

Query: 227 EYAKAVQWLDKAKAIPVVSYESHD 250
           E  +A ++ + A  +P+V+ E  D
Sbjct: 375 ESREAWKFCNLALLLPIVTKEDKD 398

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
RGD|1559836	412	Rmdn2 "regulator of microtubul	0.760	0.478	0.33	9.1e-29
UNIPROTKB|Q2TBQ7	410	RMDN2 "Regulator of microtubul	0.760	0.480	0.315	1.5e-26
UNIPROTKB|Q96LZ7	410	RMDN2 "Regulator of microtubul	0.760	0.480	0.305	1.4e-25
MGI|MGI:1913552	305	Rmdn1 "regulator of microtubul	0.764	0.649	0.313	2.2e-25
UNIPROTKB|Q32KL4	317	RMDN1 "Regulator of microtubul	0.737	0.602	0.302	3.6e-25
UNIPROTKB|F1P0I6	478	FAM82A2 "Uncharacterized prote	0.737	0.399	0.326	9.8e-25
RGD|1308697	471	Rmdn3 "regulator of microtubul	0.725	0.399	0.321	1.5e-24
UNIPROTKB|F1NBF8	264	FAM82B "Uncharacterized protei	0.752	0.738	0.314	1.6e-24
RGD|1563085	310	Rmdn1 "regulator of microtubul	0.737	0.616	0.317	1.6e-24
UNIPROTKB|Q5R6Z1	470	RMDN3 "Regulator of microtubul	0.725	0.4	0.331	2.5e-24

RGD|1559836 Rmdn2 "regulator of microtubule dynamics 2" [Rattus norvegicus (taxid:10116)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 66/200 (33%), Positives = 111/200 (55%)

Query:    51 YNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP 110
             + L  +   K   + + L+RL +A   +YD+     +K+    Y   G    ++A+  AP
Sbjct:   202 FELLCDHKEKFSEEIEFLWRLVRAYGDMYDLSTNTQEKK---HYANVGKTLGERAITRAP 258

Query:   111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI 170
              N +   WY +  G   +F+ L+ KI CG +F+  ++ AIQ+ P++  LY LKGRY Y +
Sbjct:   259 MNGHCHLWYALLCGYVSEFEGLQNKINCGHLFKKHLDIAIQLLPEEPVLYYLKGRYCYTV 318

Query:   171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAK 230
             SKLS+ E+K+A  +  ++   T  +A+ N LK EEL P     N + +AKCY++ GE  +
Sbjct:   319 SKLSWIEKKMAATLFGEIPSSTVHEALHNFLKTEELQPGYSVSNYMYVAKCYVDLGESRE 378

Query:   231 AVQWLDKAKAIPVVSYESHD 250
             A ++ + A  +P+V+ E  D
Sbjct:   379 AWKFCNLALLLPIVTKEDKD 398

GO:0000922 "spindle pole" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005874 "microtubule" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q2TBQ7 RMDN2 "Regulator of microtubule dynamics protein 2" [Bos taurus (taxid:9913)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 63/200 (31%), Positives = 109/200 (54%)

Query:    51 YNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP 110
             + L  +   K  ++ + ++R A+A   +Y++     +K+    Y   G    +KA+  AP
Sbjct:   200 FELLCDHKEKFRDEIEFIWRFARAYGDMYELSTNIQEKK---HYANIGKTLGEKAIMRAP 256

Query:   111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI 170
              N     WY +  G   +F+ L+ KI  G  F++ ++KAI+  P++  LY LKGRY Y +
Sbjct:   257 KNGYCHLWYAVLCGYVSEFEGLQNKINYGYRFKEHLDKAIEFLPEEPFLYYLKGRYCYAV 316

Query:   171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAK 230
             SKLS+ ERK+A  +  ++   T ++A+ N LK EEL P   K N + +AKCY +  +   
Sbjct:   317 SKLSWIERKMAATLFGNIPSSTVQEALQNFLKVEELQPGFSKSNYMFMAKCYADLNQIDS 376

Query:   231 AVQWLDKAKAIPVVSYESHD 250
             A+++ + A  +P ++ E  D
Sbjct:   377 AMKFCNLAVLLPCITKEDKD 396

GO:0005737 "cytoplasm" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|Q96LZ7 RMDN2 "Regulator of microtubule dynamics protein 2" [Homo sapiens (taxid:9606)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 61/200 (30%), Positives = 111/200 (55%)

Query:    51 YNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP 110
             + L  +   K  ++ + ++R A+A   +Y++     +K+    Y   G   +++A+  AP
Sbjct:   200 FELLRDHKEKFRDEIEFMWRFARAYGDMYELSTNTQEKK---HYANIGKTLSERAINRAP 256

Query:   111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI 170
              N +   WY +  G   +F+ L+ KI  G +F++ ++ AI++ P++  LY LKGRY Y +
Sbjct:   257 MNGHCHLWYAVLCGYVSEFEGLQNKINYGHLFKEHLDIAIKLLPEEPFLYYLKGRYCYTV 316

Query:   171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAK 230
             SKLS+ E+K+A  +   +   T ++A+ N LKAEEL P     N + +AKCY +  E   
Sbjct:   317 SKLSWIEKKMAATLFGKIPSSTVQEALHNFLKAEELCPGYSNPNYMYLAKCYTDLEENQN 376

Query:   231 AVQWLDKAKAIPVVSYESHD 250
             A+++ + A  +P V+ E  +
Sbjct:   377 ALKFCNLALLLPTVTKEDKE 396

GO:0005874 "microtubule" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1913552 Rmdn1 "regulator of microtubule dynamics 1" [Mus musculus (taxid:10090)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 64/204 (31%), Positives = 112/204 (54%)

Query:    51 YNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYIL-QGIEYAKKAMELA 109
             Y L ++   K+  D ++L+RLA+A     DI +     E  +K ++ + ++YAK+A+E  
Sbjct:    98 YQLLIQY--KESEDGELLWRLARASR---DIAQLSKTSEEEKKVLVYEALDYAKRALEKK 152

Query:   110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYE 169
              ++S   KWY IC+   G ++ +K KI    V ++   KAI++ PKD T   L G + Y 
Sbjct:   153 ESSSAAHKWYAICISDVGDYEGIKVKIANAYVIKEHFEKAIELNPKDATSIHLMGIWCYT 212

Query:   170 ISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYA 229
              +++ +++R+IA ++ ++    T E+A+    KAEE+ P  + +N LL+ K Y++     
Sbjct:   213 FAEMPWYQRRIAKVLFANPPSSTYEEALRYFHKAEEVDPNFYSKNLLLLGKTYLKLNNKK 272

Query:   230 KAVQWLDKAKAIPVVSYESHDLST 253
              A  WL KAK  P  + E   + T
Sbjct:   273 LAAFWLVKAKGYPAHTEEDKQIQT 296

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q32KL4 RMDN1 "Regulator of microtubule dynamics protein 1" [Bos taurus (taxid:9913)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 59/195 (30%), Positives = 109/195 (55%)

Query:    60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYIL-QGIEYAKKAMELAPNNSNTQKW 118
             K+  D ++L+RLA+A     D+ +     E  +K+++ + +EYAK+A+E   ++    KW
Sbjct:   113 KESEDAELLWRLARASR---DVAQLSGTSEEEKKFLVYEALEYAKRALEKNESSCAAHKW 169

Query:   119 YGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFER 178
             Y IC+G  G ++ +K KI    + ++   KAI++ PKD T   L G + Y ++++ +++R
Sbjct:   170 YAICIGDVGDYEGIKAKIANAYIIKEHFEKAIELNPKDATSIHLMGIWCYTVAEMPWYQR 229

Query:   179 KIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA 238
             +IA ++ +     T E+A+    +AE++ P  + +N LL+ K Y++      A  WL KA
Sbjct:   230 RIAKVLFATPPGSTYEEALGYFHRAEQVDPNFYSKNLLLLGKTYLKLHNKKLAAFWLTKA 289

Query:   239 KAIPVVSYESHDLST 253
             K  P  + E   + T
Sbjct:   290 KDYPAHTEEDKQIQT 304

GO:0000922 "spindle pole" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1P0I6 FAM82A2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 286 (105.7 bits), Expect = 9.8e-25, P = 9.8e-25
 Identities = 64/196 (32%), Positives = 110/196 (56%)

Query:    57 LNNK--QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSN 114
             LNNK    +  D L+RLA+A   +YDI    ++K++   Y   G E  + A +    ++ 
Sbjct:   272 LNNKLAYADQGDFLWRLARAHSDMYDITEDTDEKKS---YASDGKEELEIAFQKWDQSAE 328

Query:   115 TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS 174
               +WY I  G   + +S++++I+ G +F++ ++KAI + P+D   Y L GR+ Y++S L 
Sbjct:   329 CHQWYAILCGQLAEHESIQKRIQTGYIFKEHIDKAIALKPEDPKSYYLLGRWCYQVSHLG 388

Query:   175 FFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQW 234
             + E+K A  +       T +DA+ N LK EEL+P   K  ++ IAKCY + G  + A+ W
Sbjct:   389 WLEKKTASALFETPPTATVQDALQNFLKVEELSPGFSKAVRMYIAKCYKDMGNNSAALLW 448

Query:   235 LDKAKAIPVVSYESHD 250
             ++ A  +PV + E  +
Sbjct:   449 MNLASELPVNTKEDSE 464

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA

RGD|1308697 Rmdn3 "regulator of microtubule dynamics 3" [Rattus norvegicus (taxid:10116)]

 Score = 284 (105.0 bits), Expect = 1.5e-24, P = 1.5e-24
 Identities = 62/193 (32%), Positives = 114/193 (59%)

Query:    57 LNNKQP--NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSN 114
             LNNK    +  D L+RLA+A   + ++   E++K++   Y L G E A+ A++    ++ 
Sbjct:   265 LNNKLAYGSRQDFLWRLARAYSDMTELTEEESEKKS---YALNGKEEAEAALKKGDESAA 321

Query:   115 TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS 174
             +  WY +  G   + + + ++I+ G  F++ ++KAI++ P+D   + L GR+ Y++S LS
Sbjct:   322 SHLWYAVLCGQLAEHEGISKRIQSGFSFKEHVDKAIELQPEDPRGHFLLGRWCYQVSHLS 381

Query:   175 FFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQW 234
             + E+K A  +       T +DA+ + LKAEEL P   K  ++ I+KCY E G+ ++A +W
Sbjct:   382 WLEKKTATALFESPLSATVQDALQSFLKAEELQPGFSKAGRVYISKCYRELGKNSEARKW 441

Query:   235 LDKAKAIPVVSYE 247
             L+ A+ +P ++ E
Sbjct:   442 LNLAQELPNITNE 454

GO:0000922 "spindle pole" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=ISO;ISS

GO:0005874 "microtubule" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

UNIPROTKB|F1NBF8 FAM82B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 62/197 (31%), Positives = 103/197 (52%)

Query:    51 YNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP 110
             Y L ++  N+   D ++L+RLA+A   L  +     +++    Y    +EYAK+A+E   
Sbjct:    55 YQLLVQHKNRTSEDAELLWRLARASRDLAQLSITSAEEKRQLAY--DSLEYAKRALEKNE 112

Query:   111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI 170
              NS   KWY IC+   G ++ +K KI    V ++   +AI++ PKD T   L G + Y  
Sbjct:   113 ANSAAHKWYAICLSDVGDYEGIKVKIGNAFVIKEHFERAIELNPKDATSVHLMGVWCYSF 172

Query:   171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAK 230
             ++L +++RKIA ++ +     T E+A+     AEE  P  + +N L + K Y++      
Sbjct:   173 AELPWYQRKIAAMLFATPPTSTYEEALRYFHMAEEADPNFYSKNLLFLGKTYLKLNNKKM 232

Query:   231 AVQWLDKAKAIPVVSYE 247
             A+ WL KAK  P  + E
Sbjct:   233 ALLWLSKAKEYPAHTEE 249

GO:0005739 "mitochondrion" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

RGD|1563085 Rmdn1 "regulator of microtubule dynamics 1" [Rattus norvegicus (taxid:10116)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 62/195 (31%), Positives = 108/195 (55%)

Query:    60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYIL-QGIEYAKKAMELAPNNSNTQKW 118
             K+  D ++L+RLA+A     DI +     E  +K +L + +EYAK+A+E   ++    KW
Sbjct:   110 KESEDVELLWRLARASR---DIAQLCKTSEEEKKVLLYEALEYAKRALEKKGSSFAAHKW 166

Query:   119 YGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFER 178
             Y IC+   G ++ +K KI    V ++   KAI++ PKD T   L G + Y  +++ +++R
Sbjct:   167 YAICISDVGDYEGIKVKIANAYVIKEHFEKAIELNPKDATSIHLMGIWCYTFAEMPWYQR 226

Query:   179 KIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA 238
             +IA ++ ++    T E+A+    +AEE+ P  + +N LL+ K Y++      A  WL KA
Sbjct:   227 RIAEVLFANPPSSTYEEALKYFHRAEEVDPNFYSKNLLLLGKTYLKLNNKKLAAFWLVKA 286

Query:   239 KAIPVVSYESHDLST 253
             K+ P  + E   + T
Sbjct:   287 KSYPAHTEEDKQIQT 301

GO:0000922 "spindle pole" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|Q5R6Z1 RMDN3 "Regulator of microtubule dynamics protein 3" [Pongo abelii (taxid:9601)]

 Score = 282 (104.3 bits), Expect = 2.5e-24, P = 2.5e-24
 Identities = 64/193 (33%), Positives = 111/193 (57%)

Query:    57 LNNK--QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSN 114
             LNNK    +  D L+RLA+A   + ++    ++K++   Y L G E A+ A+E    +++
Sbjct:   264 LNNKLVYGSRQDFLWRLARAYSDMCELTEEVSEKKS---YALDGKEEAEAALEKGDESAD 320

Query:   115 TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS 174
                WY +  G   + +S++ +I+ G  F++ ++KAI + P++   Y L GR+ Y++S LS
Sbjct:   321 CHLWYAVLCGQLAEHESIQRRIQSGFSFKEHVDKAIALQPENPMAYFLLGRWCYQVSHLS 380

Query:   175 FFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQW 234
             + E+K A  ++      T EDA+ + LKAEEL P   K  ++ I+KCY E G+ ++A  W
Sbjct:   381 WLEKKTATALLESPLSATVEDALQSFLKAEELQPGFSKAGRVYISKCYRELGKNSEARWW 440

Query:   235 LDKAKAIPVVSYE 247
             +  A  +P V+ E
Sbjct:   441 MKLALELPDVTKE 453

GO:0005741 "mitochondrial outer membrane" evidence=ISS

GO:0006874 "cellular calcium ion homeostasis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
KOG4626|consensus	966		99.88
KOG4626|consensus	966		99.87
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.83
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.83
KOG1125|consensus	579		99.82
PRK12370	553	invasion protein regulator; Provisional	99.81
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.8
PRK11189	296	lipoprotein NlpI; Provisional	99.8
KOG1155|consensus	559		99.79
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.79
PRK12370	553	invasion protein regulator; Provisional	99.78
KOG1126|consensus	638		99.77
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.77
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.77
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.76
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.76
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.75
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.74
PRK15359	144	type III secretion system chaperone protein SscB;	99.74
PRK15359	144	type III secretion system chaperone protein SscB;	99.74
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.72
PLN02789	320	farnesyltranstransferase	99.72
KOG1155|consensus	559		99.72
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.71
KOG1173|consensus	611		99.71
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.71
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.7
KOG1126|consensus	638		99.7
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.69
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.69
KOG0547|consensus	606		99.68
KOG2076|consensus	895		99.67
PLN02789	320	farnesyltranstransferase	99.66
KOG0547|consensus	606		99.66
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.66
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.66
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.66
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.65
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.64
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.63
KOG0624|consensus	504		99.59
KOG1125|consensus	579		99.59
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.58
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.57
PRK14574	822	hmsH outer membrane protein; Provisional	99.57
PRK11189	296	lipoprotein NlpI; Provisional	99.57
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.55
KOG1174|consensus	564		99.54
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.54
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.53
KOG0553|consensus	304		99.53
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.52
KOG2002|consensus	1018		99.52
KOG0553|consensus	304		99.52
KOG0550|consensus	486		99.52
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.49
KOG1129|consensus	478		99.49
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.48
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.48
KOG2003|consensus	840		99.47
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.47
KOG0550|consensus	486		99.47
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.46
PRK11906	458	transcriptional regulator; Provisional	99.45
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.45
PRK11906	458	transcriptional regulator; Provisional	99.44
KOG3060|consensus	289		99.43
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.42
KOG2002|consensus	1018		99.41
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.4
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.39
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.38
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.38
KOG0548|consensus	539		99.38
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.36
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.36
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.36
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.35
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.34
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.32
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.32
KOG0495|consensus	913		99.32
KOG3060|consensus	289		99.3
KOG4162|consensus	799		99.27
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	99.27
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.27
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.26
KOG2076|consensus	895		99.25
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.24
KOG1174|consensus	564		99.24
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.22
PRK14574	822	hmsH outer membrane protein; Provisional	99.22
KOG1173|consensus	611		99.2
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.2
KOG0548|consensus	539		99.19
KOG1156|consensus	700		99.19
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.18
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.17
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.17
KOG4162|consensus	799		99.16
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.16
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.14
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.14
KOG0624|consensus	504		99.13
KOG1129|consensus	478		99.13
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	99.13
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.12
KOG1840|consensus	508		99.12
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.12
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.1
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.09
KOG1127|consensus	1238		99.08
KOG0495|consensus	913		99.07
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.05
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.05
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.03
KOG1128|consensus	777		99.03
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.01
KOG1156|consensus	700		98.96
KOG4648|consensus	536		98.94
KOG1840|consensus	508		98.94
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.91
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.91
PRK10803	263	tol-pal system protein YbgF; Provisional	98.9
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.9
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.89
KOG0543|consensus	397		98.88
KOG2003|consensus	840		98.87
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.87
PRK15331	165	chaperone protein SicA; Provisional	98.86
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.85
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.85
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.84
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.84
KOG1127|consensus	1238		98.82
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.82
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.8
PF13371	73	TPR_9: Tetratricopeptide repeat	98.8
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.79
KOG0543|consensus	397		98.77
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.76
PRK10803	263	tol-pal system protein YbgF; Provisional	98.74
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.73
KOG1128|consensus	777		98.73
PRK15331	165	chaperone protein SicA; Provisional	98.68
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.67
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.63
KOG3785|consensus	557		98.63
PF12688	120	TPR_5: Tetratrico peptide repeat	98.62
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.62
PF13371	73	TPR_9: Tetratricopeptide repeat	98.62
KOG1130|consensus	639		98.61
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.57
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.55
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.53
KOG2610|consensus	491		98.51
PLN03218	1060	maturation of RBCL 1; Provisional	98.5
KOG4340|consensus	459		98.49
PF12688	120	TPR_5: Tetratrico peptide repeat	98.48
KOG2376|consensus	652		98.48
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.47
PF13431	34	TPR_17: Tetratricopeptide repeat	98.45
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.44
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.44
KOG4234|consensus	271		98.39
KOG4234|consensus	271		98.38
KOG4648|consensus	536		98.38
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.36
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.35
PLN03218	1060	maturation of RBCL 1; Provisional	98.34
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.32
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.32
PF13512	142	TPR_18: Tetratricopeptide repeat	98.29
KOG4642|consensus	284		98.28
PF13431	34	TPR_17: Tetratricopeptide repeat	98.27
PF13428	44	TPR_14: Tetratricopeptide repeat	98.24
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.24
PLN03077	857	Protein ECB2; Provisional	98.23
PLN03077	857	Protein ECB2; Provisional	98.2
PF13428	44	TPR_14: Tetratricopeptide repeat	98.17
KOG1915|consensus	677		98.16
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.12
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.11
KOG4642|consensus	284		98.1
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.08
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.06
KOG2796|consensus	366		98.04
KOG1915|consensus	677		98.04
KOG3785|consensus	557		98.04
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.02
KOG0376|consensus	476		98.0
KOG4555|consensus	175		98.0
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.96
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.94
KOG0376|consensus	476		97.94
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.9
PF13512	142	TPR_18: Tetratricopeptide repeat	97.9
PRK04841	903	transcriptional regulator MalT; Provisional	97.89
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.88
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.87
KOG1130|consensus	639		97.87
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.85
KOG0545|consensus	329		97.83
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.83
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.77
KOG2053|consensus	932		97.75
KOG4555|consensus	175		97.75
PRK04841	903	transcriptional regulator MalT; Provisional	97.74
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.71
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.7
KOG2796|consensus	366		97.69
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.64
KOG3081|consensus	299		97.6
KOG2376|consensus	652		97.49
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.48
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.46
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.4
KOG1308|consensus	377		97.38
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.37
KOG0530|consensus	318		97.34
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.32
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.31
KOG1308|consensus	377		97.28
KOG0530|consensus	318		97.28
KOG1070|consensus	1710		97.26
KOG2053|consensus	932		97.24
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.23
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.23
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.23
KOG0545|consensus	329		97.22
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.18
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.17
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.16
KOG1070|consensus	1710		97.14
KOG1550|consensus	552		97.13
KOG0551|consensus	390		97.13
KOG2610|consensus	491		97.08
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.07
KOG0551|consensus	390		97.06
KOG1586|consensus	288		97.05
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.05
KOG3081|consensus	299		97.05
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.01
KOG1585|consensus	308		96.93
KOG0529|consensus	421		96.92
KOG1941|consensus	518		96.87
KOG3824|consensus	472		96.87
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.83
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.78
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.73
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.71
KOG2047|consensus	835		96.69
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.69
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.66
KOG1550|consensus	552		96.66
KOG4340|consensus	459		96.63
KOG1941|consensus	518		96.57
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.55
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.55
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.54
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.42
KOG3824|consensus	472		96.37
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.36
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.34
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.33
KOG2396|consensus	568		96.27
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.25
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.11
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.02
KOG4507|consensus	886		96.01
KOG2047|consensus	835		95.92
KOG2396|consensus	568		95.87
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.73
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.73
KOG0529|consensus	421		95.72
PRK10941	269	hypothetical protein; Provisional	95.66
KOG3364|consensus	149		95.48
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.38
KOG2471|consensus	696		95.37
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.36
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.35
KOG1586|consensus	288		95.33
KOG1310|consensus	758		95.33
KOG0985|consensus	1666		95.32
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.96
KOG3617|consensus	1416		94.95
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.88
KOG4507|consensus	886		94.87
KOG1310|consensus	758		94.81
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.75
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.47
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.34
PRK10941	269	hypothetical protein; Provisional	94.3
KOG3617|consensus	1416		94.27
KOG2471|consensus	696		94.17
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.16
KOG1839|consensus	1236		94.15
KOG1585|consensus	308		93.61
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.4
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.35
KOG1914|consensus	656		93.31
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	93.1
KOG1258|consensus	577		93.06
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.93
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	92.73
KOG4279|consensus	1226		92.51
KOG1914|consensus	656		92.45
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	92.4
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	92.29
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.17
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	92.06
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	92.02
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.89
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.83
KOG3364|consensus	149		91.83
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	91.55
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.38
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.86
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	90.71
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.7
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.39
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	89.92
KOG4814|consensus	872		89.62
COG3947	361	Response regulator containing CheY-like receiver a	89.37
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.2
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	89.12
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	88.71
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	88.32
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	87.76
PF12854	34	PPR_1: PPR repeat	87.7
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	87.68
PF12753	404	Nro1: Nuclear pore complex subunit Nro1; InterPro:	87.48
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.47
KOG2422|consensus	665		87.47
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	87.18
KOG2300|consensus	629		86.54
KOG4014|consensus	248		86.15
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	85.6
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	85.6
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	85.57
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	84.76
COG2912	269	Uncharacterized conserved protein [Function unknow	84.52
KOG2300|consensus	629		83.98
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	82.42
COG3629	280	DnrI DNA-binding transcriptional activator of the	81.53
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	81.43
KOG4014|consensus	248		81.4
COG2912	269	Uncharacterized conserved protein [Function unknow	81.03
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	80.61
KOG0890|consensus	2382		80.43
KOG4814|consensus	872		80.26

>KOG4626|consensus

Probab=99.88  E-value=2.6e-21  Score=172.99  Aligned_cols=171  Identities=19%  Similarity=0.170  Sum_probs=129.6

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI  121 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~  121 (259)
                      .. |..+-||.-|+++++.+|+-++++.+||.++...|+..              +|...|.+||.+.|+++++.+++|.
T Consensus       298 eq-G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~--------------ea~~cYnkaL~l~p~hadam~NLgn  362 (966)
T KOG4626|consen  298 EQ-GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVT--------------EAVDCYNKALRLCPNHADAMNNLGN  362 (966)
T ss_pred             cc-ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchH--------------HHHHHHHHHHHhCCccHHHHHHHHH
Confidence            44 78888888888888888888888888888888777765              6666666666666666666666666


Q ss_pred             HHHHhhchhhHHH------------------------HHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHH
Q psy9159         122 CVGANGQFQSLKE------------------------KIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFE  177 (259)
Q Consensus       122 ~~~~~~~~~~~~~------------------------~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~  177 (259)
                      ++...|.++.+..                        +-++..+|+.+|++||+++|+.+.++.++|..|.++       
T Consensus       363 i~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~-------  435 (966)
T KOG4626|consen  363 IYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM-------  435 (966)
T ss_pred             HHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh-------
Confidence            6665555442211                        011122566777777777777777777777777665       


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         178 RKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       178 ~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                                   |+...|+.+|.+||.++| -..+++.+||.+|...|+..+|+..|+.++.++|+.++.
T Consensus       436 -------------g~v~~A~q~y~rAI~~nP-t~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA  492 (966)
T KOG4626|consen  436 -------------GDVSAAIQCYTRAIQINP-TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA  492 (966)
T ss_pred             -------------hhHHHHHHHHHHHHhcCc-HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence                         789999999999999999 679999999999999999999999999999999998873

>KOG4626|consensus

Probab=99.87  E-value=1.1e-21  Score=175.44  Aligned_cols=200  Identities=19%  Similarity=0.166  Sum_probs=167.9

Q ss_pred             HHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------cCcHH---------HHHHHH
Q psy9159          36 DRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------ENDKE---------ASEKYI   95 (259)
Q Consensus        36 ~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~~~~~---------~~~~~~   95 (259)
                      ...|. .+ |+..+|+..|+++++++|+.+++|++||.+|..++.+++.           ++...         .-.+.+
T Consensus       225 g~~f~-~~-Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~l  302 (966)
T KOG4626|consen  225 GCVFN-AQ-GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLL  302 (966)
T ss_pred             chHHh-hc-chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccH
Confidence            34442 55 9999999999999999999999999999999998877631           11100         124568


Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccch
Q psy9159          96 LQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF  175 (259)
Q Consensus        96 ~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~  175 (259)
                      +-|+..|++||+++|+.++++.++|.++...|+..          ++..+|.+||.+.|+++.+.++||.++.+.+.++.
T Consensus       303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~----------ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~  372 (966)
T KOG4626|consen  303 DLAIDTYKRALELQPNFPDAYNNLANALKDKGSVT----------EAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEE  372 (966)
T ss_pred             HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchH----------HHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchH
Confidence            99999999999999999999999999999998876          56789999999999999999999999999988765


Q ss_pred             HHHHHHHHHhc--------------CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         176 FERKIAVLIVS--------------DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       176 ~~~~~~~~~~~--------------~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                      ..+....++--              ...+|++++|+.||+.|+.++| ...+++.++|.+|..+|+.++|+.+|.+|+.+
T Consensus       373 A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P-~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~  451 (966)
T KOG4626|consen  373 ATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP-TFADALSNMGNTYKEMGDVSAAIQCYTRAIQI  451 (966)
T ss_pred             HHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc-hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence            44333222110              0237999999999999999999 67999999999999999999999999999999


Q ss_pred             CCCCccc
Q psy9159         242 PVVSYES  248 (259)
Q Consensus       242 ~p~~~~~  248 (259)
                      +|.-.|.
T Consensus       452 nPt~AeA  458 (966)
T KOG4626|consen  452 NPTFAEA  458 (966)
T ss_pred             CcHHHHH
Confidence            9988754

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.83  E-value=4.3e-19  Score=167.46  Aligned_cols=158  Identities=14%  Similarity=0.101  Sum_probs=135.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      |++++|+..+++++..+|+++..++.+|.++...|++.              +|+..++++++++|+++.++..+|.++.
T Consensus       345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~--------------eA~~~~~~al~~~p~~~~~~~~lg~~~~  410 (615)
T TIGR00990       345 GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD--------------KAEEDFDKALKLNSEDPDIYYHRAQLHF  410 (615)
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            78888888888888888888888888888888777764              8888888888888888888888888888


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE  204 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi  204 (259)
                      ..|++.          .|...++++++++|++..++..+|.+++..                    |++++|+..|++++
T Consensus       411 ~~g~~~----------~A~~~~~kal~l~P~~~~~~~~la~~~~~~--------------------g~~~eA~~~~~~al  460 (615)
T TIGR00990       411 IKGEFA----------QAGKDYQKSIDLDPDFIFSHIQLGVTQYKE--------------------GSIASSMATFRRCK  460 (615)
T ss_pred             HcCCHH----------HHHHHHHHHHHcCccCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHH
Confidence            887776          456788888888888888888888877764                    88999999999999


Q ss_pred             hhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         205 ELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       205 ~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      ++.| +++.++..+|.++..+|++++|++.|+++++++|.+..
T Consensus       461 ~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~  502 (615)
T TIGR00990       461 KNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP  502 (615)
T ss_pred             HhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc
Confidence            9999 77999999999999999999999999999999987543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.83  E-value=4.3e-19  Score=167.43  Aligned_cols=187  Identities=16%  Similarity=0.148  Sum_probs=160.0

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      +..+..+.  .. |++++|+..++++++.+|+++++++.+|.++...|++.              +|+..++++++++|+
T Consensus       369 ~~la~~~~--~~-g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--------------~A~~~~~kal~l~P~  431 (615)
T TIGR00990       369 IKRASMNL--EL-GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA--------------QAGKDYQKSIDLDPD  431 (615)
T ss_pred             HHHHHHHH--HC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHcCcc
Confidence            44454555  55 99999999999999999999999999999999999875              999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC---
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL---  188 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~---  188 (259)
                      +..++..+|.++...|++.          .+...++++++++|+++.++..+|.++...++++...+.+..++...+   
T Consensus       432 ~~~~~~~la~~~~~~g~~~----------eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~  501 (615)
T TIGR00990       432 FIFSHIQLGVTQYKEGSIA----------SSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK  501 (615)
T ss_pred             CHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence            9999999999999999887          567899999999999999999999999988876544333322221110   


Q ss_pred             ------------------CCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         189 ------------------DEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       189 ------------------~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                                        ..|++++|+.+++++++++| ++..++..+|.++..+|++++|+++|++++++.+...
T Consensus       502 ~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~  576 (615)
T TIGR00990       502 PMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG  576 (615)
T ss_pred             cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence                              14899999999999999999 7788899999999999999999999999999986644

>KOG1125|consensus

Probab=99.82  E-value=3.6e-19  Score=158.35  Aligned_cols=183  Identities=17%  Similarity=0.189  Sum_probs=146.1

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      ++-++++..++  .+ |+..+|.-+|+.+++.+|.+.++|..||.+....++..              .|+..+++|+++
T Consensus       286 pdPf~eG~~lm--~n-G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~--------------~ai~AL~rcl~L  348 (579)
T KOG1125|consen  286 PDPFKEGCNLM--KN-GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQ--------------NAISALRRCLEL  348 (579)
T ss_pred             CChHHHHHHHH--hc-CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchH--------------HHHHHHHHHHhc
Confidence            34578899999  77 99999999999999999999999999999999877654              999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhhchhhHHHHH----------------------------------------------------
Q psy9159         109 APNNSNTQKWYGICVGANGQFQSLKEKI----------------------------------------------------  136 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~----------------------------------------------------  136 (259)
                      +|+|-+++..||+.+...|.-..+...+                                                    
T Consensus       349 dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~  428 (579)
T KOG1125|consen  349 DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKI  428 (579)
T ss_pred             CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999987765432221100                                                    


Q ss_pred             ---------------hcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH
Q psy9159         137 ---------------KCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL  201 (259)
Q Consensus       137 ---------------~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~  201 (259)
                                     .+..++.++|+-||..+|+|...|..||..+..                    ..+.+|||..|.
T Consensus       429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN--------------------~~~s~EAIsAY~  488 (579)
T KOG1125|consen  429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN--------------------GNRSEEAISAYN  488 (579)
T ss_pred             ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC--------------------CcccHHHHHHHH
Confidence                           011233455555555555555555555554322                    478999999999


Q ss_pred             HHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159         202 KAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       202 kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~  249 (259)
                      +|++|.| .+++++++||.+++.+|-|+||+++|-.||.+.+.+...+
T Consensus       489 rALqLqP-~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~  535 (579)
T KOG1125|consen  489 RALQLQP-GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHN  535 (579)
T ss_pred             HHHhcCC-CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccc
Confidence            9999999 7899999999999999999999999999999998855443

>PRK12370 invasion protein regulator; Provisional

Probab=99.81  E-value=1.7e-18  Score=161.28  Aligned_cols=186  Identities=15%  Similarity=0.066  Sum_probs=146.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      +.+++|+..++++++.+|+++.++..+|.+|..++....     ....+.+++|+..++++++++|+++.+|..+|.++.
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~-----~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~  349 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI-----FDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINT  349 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC-----cccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            678999999999999999999999999999987765310     012344679999999999999999999999999999


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcC--------------CCC
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSD--------------LDE  190 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~--------------~~~  190 (259)
                      ..|++.          +|...+++|++++|+++.+|+.+|.++...|+.+.....+..++...              ...
T Consensus       350 ~~g~~~----------~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~  419 (553)
T PRK12370        350 IHSEYI----------VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH  419 (553)
T ss_pred             HccCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence            888876          56789999999999999999999999988876542222222111110              114


Q ss_pred             CcHHHHHHHHHHHHhhC-CCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         191 PTAEDAIANCLKAEELA-PAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~-P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      |++++|+.+++++++.+ | +.+..+..+|.+|..+|++++|+..++++...+|.+.
T Consensus       420 g~~eeA~~~~~~~l~~~~p-~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~  475 (553)
T PRK12370        420 TGIDDAIRLGDELRSQHLQ-DNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL  475 (553)
T ss_pred             cCHHHHHHHHHHHHHhccc-cCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH
Confidence            78888888888888775 5 5677788888888888888888888888777666543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.80  E-value=8.5e-18  Score=137.52  Aligned_cols=167  Identities=20%  Similarity=0.228  Sum_probs=146.4

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      ..+..++  .. |++++|+..++++++.+|+++.++..+|.++...|++.              +|+..++++++..|++
T Consensus        36 ~la~~~~--~~-~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~--------------~A~~~~~~al~~~~~~   98 (234)
T TIGR02521        36 QLALGYL--EQ-GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELE--------------KAEDSFRRALTLNPNN   98 (234)
T ss_pred             HHHHHHH--HC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHhhCCCC
Confidence            3444555  56 99999999999999999999999999999999999875              9999999999999999


Q ss_pred             hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccC--CCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCC
Q psy9159         113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMA--PKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDE  190 (259)
Q Consensus       113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~--P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (259)
                      +.++..+|.++...|++.          .+...+++++...  |.....+..+|.++...                    
T Consensus        99 ~~~~~~~~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------  148 (234)
T TIGR02521        99 GDVLNNYGTFLCQQGKYE----------QAMQQFEQAIEDPLYPQPARSLENAGLCALKA--------------------  148 (234)
T ss_pred             HHHHHHHHHHHHHcccHH----------HHHHHHHHHHhccccccchHHHHHHHHHHHHc--------------------
Confidence            999999999999888876          4567888888754  56677889999888764                    


Q ss_pred             CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      |++++|+.++.++++.+| +....+..+|.++...|++++|++++++++++.|.+++
T Consensus       149 g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  204 (234)
T TIGR02521       149 GDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAE  204 (234)
T ss_pred             CCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            889999999999999999 67888999999999999999999999999999765543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.80  E-value=7.6e-18  Score=145.22  Aligned_cols=181  Identities=18%  Similarity=0.063  Sum_probs=124.4

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      |++++|+..|+++++.+|+++++++.+|.++...|++.              +|++.++++++++|++..++.++|.++.
T Consensus        78 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~--------------~A~~~~~~Al~l~P~~~~a~~~lg~~l~  143 (296)
T PRK11189         78 GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD--------------AAYEAFDSVLELDPTYNYAYLNRGIALY  143 (296)
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888765              8888888888888888888888888888


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC-----------CCCcH
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL-----------DEPTA  193 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-----------~~g~~  193 (259)
                      ..|++.          .+.+.++++++++|+++.....+. +....++.+.....+.......+           ..|+.
T Consensus       144 ~~g~~~----------eA~~~~~~al~~~P~~~~~~~~~~-l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~  212 (296)
T PRK11189        144 YGGRYE----------LAQDDLLAFYQDDPNDPYRALWLY-LAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKI  212 (296)
T ss_pred             HCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHH-HHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCC
Confidence            888776          467888888888888873211111 11111111111111111000000           02333


Q ss_pred             --HHHH----HHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC-CCccchhh
Q psy9159         194 --EDAI----ANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV-VSYESHDL  251 (259)
Q Consensus       194 --~eAi----~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p-~~~~~~~~  251 (259)
                        ++++    +.++.+++++| ....+|++||.++..+|++++|+.+|++|++++| +..+..-.
T Consensus       213 ~~~~~~~~~~~~~~~~~~l~~-~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~  276 (296)
T PRK11189        213 SEETLMERLKAGATDNTELAE-RLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYA  276 (296)
T ss_pred             CHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence              2233    33334446677 5678999999999999999999999999999996 55554433

>KOG1155|consensus

Probab=99.79  E-value=4.1e-18  Score=148.21  Aligned_cols=152  Identities=17%  Similarity=0.155  Sum_probs=141.1

Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy9159          44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV  123 (259)
Q Consensus        44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~  123 (259)
                      ++++++|+.+|+++++.+|....+|..+|-=|..|.+..              .|++.|++|++++|.+..+|+.+|+++
T Consensus       343 r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~--------------AAi~sYRrAvdi~p~DyRAWYGLGQaY  408 (559)
T KOG1155|consen  343 RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTH--------------AAIESYRRAVDINPRDYRAWYGLGQAY  408 (559)
T ss_pred             HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccH--------------HHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence            489999999999999999999999999999999999865              999999999999999999999999999


Q ss_pred             HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159         124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA  203 (259)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA  203 (259)
                      ..++...          -+.-+++||+++.|+|+..|..||.+|.++                    ++.++||+||++|
T Consensus       409 eim~Mh~----------YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl--------------------~~~~eAiKCykra  458 (559)
T KOG1155|consen  409 EIMKMHF----------YALYYFQKALELKPNDSRLWVALGECYEKL--------------------NRLEEAIKCYKRA  458 (559)
T ss_pred             HHhcchH----------HHHHHHHHHHhcCCCchHHHHHHHHHHHHh--------------------ccHHHHHHHHHHH
Confidence            8877643          356889999999999999999999999775                    7899999999999


Q ss_pred             HhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         204 EELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       204 i~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                      +.... -+..++..||..|..+++.++|..+|++.++
T Consensus       459 i~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  459 ILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             Hhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99987 4578899999999999999999999999988

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.79  E-value=1.4e-17  Score=162.27  Aligned_cols=170  Identities=11%  Similarity=0.029  Sum_probs=133.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------cCcH------HHHH---HHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------ENDK------EASE---KYILQGIEYAKK  104 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~~~~------~~~~---~~~~~A~~~~~k  104 (259)
                      |++++|+..++++....|.+ ..++.+|.++...|+..+.           +...      ....   +.+++|+..+++
T Consensus       523 Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~  601 (987)
T PRK09782        523 EDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTR  601 (987)
T ss_pred             CCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            56666666666655443333 3345555555555544320           0000      0112   456799999999


Q ss_pred             HHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHH
Q psy9159         105 AMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLI  184 (259)
Q Consensus       105 al~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~  184 (259)
                      +++++|+ +.++..+|.++...|++.          ++...++++++++|+++.++..+|.++...              
T Consensus       602 AL~l~P~-~~a~~~LA~~l~~lG~~d----------eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~--------------  656 (987)
T PRK09782        602 SLNIAPS-ANAYVARATIYRQRHNVP----------AAVSDLRAALELEPNNSNYQAALGYALWDS--------------  656 (987)
T ss_pred             HHHhCCC-HHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------------
Confidence            9999996 899999999999998887          567899999999999999999999988774              


Q ss_pred             hcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         185 VSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       185 ~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                            |++++|+.+|++|++++| +++.++.++|.++..+|++++|+..|+++++++|.+..
T Consensus       657 ------G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~  712 (987)
T PRK09782        657 ------GDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL  712 (987)
T ss_pred             ------CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence                  889999999999999999 78999999999999999999999999999999998765

>PRK12370 invasion protein regulator; Provisional

Probab=99.78  E-value=1.2e-17  Score=155.61  Aligned_cols=171  Identities=16%  Similarity=0.049  Sum_probs=138.5

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      +++++|+..++++++.+|++++++..+|.++...|++.              +|+..++++++++|+++.+|+.+|.++.
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~--------------~A~~~~~~Al~l~P~~~~a~~~lg~~l~  383 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI--------------VGSLLFKQANLLSPISADIKYYYGWNLF  383 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56899999999999999999999999999999988865              9999999999999999999999999999


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhc---------------CCC
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVS---------------DLD  189 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~---------------~~~  189 (259)
                      ..|++.          +|...++++++++|.++.+++.++.+++..++++.....+..++..               ...
T Consensus       384 ~~G~~~----------eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~  453 (553)
T PRK12370        384 MAGQLE----------EALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL  453 (553)
T ss_pred             HCCCHH----------HHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh
Confidence            999887          5678999999999999888777776676666654332222211110               012


Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                      .|++++|+..+.+.....| ....++..++..|...|+  +|...+++.++..
T Consensus       454 ~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~  503 (553)
T PRK12370        454 KGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQNSE--RALPTIREFLESE  503 (553)
T ss_pred             CCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhccHH--HHHHHHHHHHHHh
Confidence            6999999999999999999 667778889999998885  6666666655543

>KOG1126|consensus

Probab=99.77  E-value=1.4e-18  Score=156.77  Aligned_cols=150  Identities=20%  Similarity=0.188  Sum_probs=124.6

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHH
Q psy9159          55 MELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKE  134 (259)
Q Consensus        55 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~  134 (259)
                      +..+..+|+.|+.|..+|.+|.-.+++.              .|+..+++|+.+||+++-+|..+|.=+....+++    
T Consensus       411 q~Li~~~~~sPesWca~GNcfSLQkdh~--------------~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d----  472 (638)
T KOG1126|consen  411 QDLIDTDPNSPESWCALGNCFSLQKDHD--------------TAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFD----  472 (638)
T ss_pred             HHHHhhCCCCcHHHHHhcchhhhhhHHH--------------HHHHHHHHhhccCCccchhhhhcCChhhhhHHHH----
Confidence            3445567888888888888887776654              9999999999999999888877776665555554    


Q ss_pred             HHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHh
Q psy9159         135 KIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKEN  214 (259)
Q Consensus       135 ~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~  214 (259)
                            .+..+|++||.++|.|..+||.+|.+|.+.                    ++++.|.-+|++|++++| .+...
T Consensus       473 ------~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq--------------------ek~e~Ae~~fqkA~~INP-~nsvi  525 (638)
T KOG1126|consen  473 ------KAMKSFRKALGVDPRHYNAWYGLGTVYLKQ--------------------EKLEFAEFHFQKAVEINP-SNSVI  525 (638)
T ss_pred             ------hHHHHHHhhhcCCchhhHHHHhhhhheecc--------------------chhhHHHHHHHhhhcCCc-cchhH
Confidence                  678999999999999999999999999874                    778888889999999988 67777


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159         215 QLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       215 ~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~  249 (259)
                      ...+|..+..+|+.++|+..|++|+-++|.|+-.+
T Consensus       526 ~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~  560 (638)
T KOG1126|consen  526 LCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK  560 (638)
T ss_pred             HhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence            88888888888988999999999988888887543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.77  E-value=3.6e-17  Score=131.31  Aligned_cols=168  Identities=21%  Similarity=0.155  Sum_probs=148.3

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      ++.+-.++  .. |++..|...++++++.||++..+|..+|.+|...|..+              .|.+.|++|+.++|+
T Consensus        39 lqLal~YL--~~-gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~--------------~A~e~YrkAlsl~p~  101 (250)
T COG3063          39 LQLALGYL--QQ-GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEND--------------LADESYRKALSLAPN  101 (250)
T ss_pred             HHHHHHHH--HC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChh--------------hHHHHHHHHHhcCCC
Confidence            55566666  56 99999999999999999999999999999999999865              999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHcc--CCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM--APKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD  189 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l--~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~  189 (259)
                      +.+++.++|..+...|.++          .+...|++|+..  -|..+.+|-++|.|-.+.                   
T Consensus       102 ~GdVLNNYG~FLC~qg~~~----------eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~-------------------  152 (250)
T COG3063         102 NGDVLNNYGAFLCAQGRPE----------EAMQQFERALADPAYGEPSDTLENLGLCALKA-------------------  152 (250)
T ss_pred             ccchhhhhhHHHHhCCChH----------HHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc-------------------
Confidence            9999999999999999887          456788888763  345668899999887764                   


Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                       |+++.|.++|+++++++| +++.+...++..++..|++..|.-.+++.....+-+.+
T Consensus       153 -gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~  208 (250)
T COG3063         153 -GQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAE  208 (250)
T ss_pred             -CCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHH
Confidence             889999999999999999 78899999999999999999999999998877665444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.77  E-value=3.5e-17  Score=155.08  Aligned_cols=164  Identities=11%  Similarity=0.025  Sum_probs=141.5

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI  121 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~  121 (259)
                      .. |++++|+..+.+++..+|+++.++..+|.++...|++.+          -..+|+..++++++++|+++.++..+|.
T Consensus       224 ~~-g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~e----------A~~~A~~~~~~Al~l~P~~~~a~~~lg~  292 (656)
T PRK15174        224 AV-GKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSRE----------AKLQAAEHWRHALQFNSDNVRIVTLYAD  292 (656)
T ss_pred             HC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchh----------hHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            45 899999999999999999999999999999998887640          0125889999999999999999999999


Q ss_pred             HHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH
Q psy9159         122 CVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL  201 (259)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~  201 (259)
                      ++...|++.          .+...++++++++|+++.++..+|.++...                    |++++|+..|+
T Consensus       293 ~l~~~g~~~----------eA~~~l~~al~l~P~~~~a~~~La~~l~~~--------------------G~~~eA~~~l~  342 (656)
T PRK15174        293 ALIRTGQNE----------KAIPLLQQSLATHPDLPYVRAMYARALRQV--------------------GQYTAASDEFV  342 (656)
T ss_pred             HHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHH
Confidence            998888877          466888999999999999999999888764                    88999999999


Q ss_pred             HHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         202 KAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       202 kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      ++++.+| +....+..+|.++...|++++|+..|++++++.|++..
T Consensus       343 ~al~~~P-~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~  387 (656)
T PRK15174        343 QLAREKG-VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP  387 (656)
T ss_pred             HHHHhCc-cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence            9999999 66667777899999999999999999999999998764

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.76  E-value=2.4e-16  Score=131.24  Aligned_cols=191  Identities=18%  Similarity=0.116  Sum_probs=140.2

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP---DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME  107 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~  107 (259)
                      .+..+..++  .. |++++|+..+++++..+|+++   ++++.+|.++...|++.              +|+..++++++
T Consensus        36 ~~~~g~~~~--~~-~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~--------------~A~~~~~~~l~   98 (235)
T TIGR03302        36 LYEEAKEAL--DS-GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYA--------------EAIAAADRFIR   98 (235)
T ss_pred             HHHHHHHHH--Hc-CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHH--------------HHHHHHHHHHH
Confidence            366666676  56 999999999999999999887   68899999999999875              99999999999


Q ss_pred             hCCCChH---HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHH
Q psy9159         108 LAPNNSN---TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLI  184 (259)
Q Consensus       108 ~~P~~~~---~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~  184 (259)
                      ..|+++.   +++.+|.++......  .....+....+.+.++++++.+|++..++..+..+.............++..+
T Consensus        99 ~~p~~~~~~~a~~~~g~~~~~~~~~--~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~  176 (235)
T TIGR03302        99 LHPNHPDADYAYYLRGLSNYNQIDR--VDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFY  176 (235)
T ss_pred             HCcCCCchHHHHHHHHHHHHHhccc--ccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999887   677888887654110  00011222357889999999999998776444322111111111111111112


Q ss_pred             hcCCCCCcHHHHHHHHHHHHhhCCC--CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159         185 VSDLDEPTAEDAIANCLKAEELAPA--PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV  243 (259)
Q Consensus       185 ~~~~~~g~~~eAi~~~~kAi~l~P~--~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p  243 (259)
                      +.   .|++++|+..|+++++..|+  ....+++.+|.++..+|++++|+++++......|
T Consensus       177 ~~---~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       177 LK---RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HH---cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            11   49999999999999999773  2357899999999999999999999988876665

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.76  E-value=1.3e-16  Score=154.47  Aligned_cols=203  Identities=20%  Similarity=0.156  Sum_probs=165.2

Q ss_pred             ccCCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHH
Q psy9159          27 VNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM  106 (259)
Q Consensus        27 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal  106 (259)
                      ..+..+..+..++  .. |++++|+..+.++++.+|+++++++.+|.++...|++.              +|+..+++++
T Consensus        21 ~~~~~~~~a~~~~--~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~--------------~A~~~~~~~~   83 (899)
T TIGR02917        21 SPESLIEAAKSYL--QK-NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYA--------------AAEKELRKAL   83 (899)
T ss_pred             CHHHHHHHHHHHH--Hc-CChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHH
Confidence            3355788888888  67 99999999999999999999999999999999999876              9999999999


Q ss_pred             HhCCCChHHHHHHHHHHHHhhchhhHHHHH-------------------------hcHHHHHHHHHHHHccCCCChhHHH
Q psy9159         107 ELAPNNSNTQKWYGICVGANGQFQSLKEKI-------------------------KCGVVFRDQMNKAIQMAPKDFTLYS  161 (259)
Q Consensus       107 ~~~P~~~~~~~~la~~~~~~~~~~~~~~~~-------------------------~~~~~a~~~~~kAl~l~P~~~~~~~  161 (259)
                      +..|++..++..++.++...|++..+....                         +....+...++++++.+|+++.++.
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  163 (899)
T TIGR02917        84 SLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKL  163 (899)
T ss_pred             HcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHH
Confidence            999999999888999888888776544322                         1224677899999999999999999


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHhcC--------------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCC
Q psy9159         162 LKGRYQYEISKLSFFERKIAVLIVSD--------------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGE  227 (259)
Q Consensus       162 ~lG~~~~~~~~~~~~~~~~~~~~~~~--------------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~  227 (259)
                      .+|.++...++.....+.+...+...              ...|++++|+.+|+++++++| .+...+..++.++...|+
T Consensus       164 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~  242 (899)
T TIGR02917       164 GLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALATILIEAGE  242 (899)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCC
Confidence            99999988876544333332221111              125889999999999999999 678888889999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcc
Q psy9159         228 YAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       228 ~~eA~~~~~kal~l~p~~~~  247 (259)
                      +++|...++++++..|.++.
T Consensus       243 ~~~A~~~~~~~~~~~~~~~~  262 (899)
T TIGR02917       243 FEEAEKHADALLKKAPNSPL  262 (899)
T ss_pred             HHHHHHHHHHHHHhCCCCch
Confidence            99999999988888887654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.75  E-value=1.8e-16  Score=158.95  Aligned_cols=193  Identities=15%  Similarity=0.028  Sum_probs=135.5

Q ss_pred             HHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChH
Q psy9159          35 IDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSN  114 (259)
Q Consensus        35 ~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~  114 (259)
                      +..++  .. |++++|+..|+++++.+|++++++..+|.+|...|++.              +|+.+++++++++|++..
T Consensus       276 G~~~~--~~-g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~--------------eA~~~l~~Al~~~p~~~~  338 (1157)
T PRK11447        276 GLAAV--DS-GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRA--------------RAVAQFEKALALDPHSSN  338 (1157)
T ss_pred             HHHHH--HC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCCccc
Confidence            44455  56 99999999999999999999999999999999999875              999999999999999865


Q ss_pred             HHH--------------HHHHHHHHhhchhhHHHHH------------------------hcHHHHHHHHHHHHccCCCC
Q psy9159         115 TQK--------------WYGICVGANGQFQSLKEKI------------------------KCGVVFRDQMNKAIQMAPKD  156 (259)
Q Consensus       115 ~~~--------------~la~~~~~~~~~~~~~~~~------------------------~~~~~a~~~~~kAl~l~P~~  156 (259)
                      ...              ..|.++...|++..+...+                        ++...|.+.|+++++++|++
T Consensus       339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~  418 (1157)
T PRK11447        339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN  418 (1157)
T ss_pred             hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            321              1233444445544322111                        11123444455555555555


Q ss_pred             hhHHHHHHHHHHHhhccchHHHH--------------------------HHHHHhcCCCCCcHHHHHHHHHHHHhhCCCC
Q psy9159         157 FTLYSLKGRYQYEISKLSFFERK--------------------------IAVLIVSDLDEPTAEDAIANCLKAEELAPAP  210 (259)
Q Consensus       157 ~~~~~~lG~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~  210 (259)
                      ..++..++.++... ..+.....                          .+..+   ...|++++|+.+|+++++++| +
T Consensus       419 ~~a~~~L~~l~~~~-~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~---~~~g~~~eA~~~~~~Al~~~P-~  493 (1157)
T PRK11447        419 TNAVRGLANLYRQQ-SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL---ENQGKWAQAAELQRQRLALDP-G  493 (1157)
T ss_pred             HHHHHHHHHHHHhc-CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH---HHCCCHHHHHHHHHHHHHhCC-C
Confidence            55555444443211 10000000                          00000   125999999999999999999 7


Q ss_pred             cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159         211 WKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       211 ~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~  249 (259)
                      ++.+++.+|.+|..+|++++|+..++++++++|.+++..
T Consensus       494 ~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~  532 (1157)
T PRK11447        494 SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQV  532 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            789999999999999999999999999999999887643

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.74  E-value=8.7e-17  Score=129.07  Aligned_cols=145  Identities=17%  Similarity=0.150  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHH
Q psy9159          66 DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQ  145 (259)
Q Consensus        66 ~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~  145 (259)
                      .+...||.-|+..|+..              .|..-+++||+.||++..+|..++.++...|+.+          .+.+.
T Consensus        36 ~arlqLal~YL~~gd~~--------------~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~----------~A~e~   91 (250)
T COG3063          36 KARLQLALGYLQQGDYA--------------QAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEND----------LADES   91 (250)
T ss_pred             HHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChh----------hHHHH
Confidence            45567888899999875              9999999999999999999999999999998876          46789


Q ss_pred             HHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC--CcHHhHHHHHHHHH
Q psy9159         146 MNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA--PWKENQLLIAKCYI  223 (259)
Q Consensus       146 ~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~--~~~~~~~~la~~~~  223 (259)
                      |++|++++|++.+++++.|.|++..                    |++++|..+|++|+.. |.  ..+..+-++|.|-.
T Consensus        92 YrkAlsl~p~~GdVLNNYG~FLC~q--------------------g~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal  150 (250)
T COG3063          92 YRKALSLAPNNGDVLNNYGAFLCAQ--------------------GRPEEAMQQFERALAD-PAYGEPSDTLENLGLCAL  150 (250)
T ss_pred             HHHHHhcCCCccchhhhhhHHHHhC--------------------CChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHh
Confidence            9999999999999999999999874                    8899999999999984 41  23567999999999


Q ss_pred             HhCCHHHHHHHHHHHhcCCCCCccchhhhhhh
Q psy9159         224 EAGEYAKAVQWLDKAKAIPVVSYESHDLSTTY  255 (259)
Q Consensus       224 ~~g~~~eA~~~~~kal~l~p~~~~~~~~~~~~  255 (259)
                      +.|+++.|.++|+++++++|.++......+.-
T Consensus       151 ~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~  182 (250)
T COG3063         151 KAGQFDQAEEYLKRALELDPQFPPALLELARL  182 (250)
T ss_pred             hcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence            99999999999999999999998765555443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.74  E-value=8.9e-17  Score=124.06  Aligned_cols=125  Identities=9%  Similarity=-0.070  Sum_probs=79.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhh
Q psy9159          52 NLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQS  131 (259)
Q Consensus        52 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~  131 (259)
                      ..++++++.+|++   ++.+|.++...|++.              +|+..|++++.++|+++.+|..+|.++...|++. 
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~--------------~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~-   75 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGDYS--------------RAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYT-   75 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCCHH--------------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH-
Confidence            4566666666653   445666666666653              6666666666666666666666666666666665 


Q ss_pred             HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc
Q psy9159         132 LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW  211 (259)
Q Consensus       132 ~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~  211 (259)
                               .|...|+++++++|+++.+++.+|.++...                    |++++|+.+|++|+++.| ++
T Consensus        76 ---------~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~--------------------g~~~eAi~~~~~Al~~~p-~~  125 (144)
T PRK15359         76 ---------TAINFYGHALMLDASHPEPVYQTGVCLKMM--------------------GEPGLAREAFQTAIKMSY-AD  125 (144)
T ss_pred             ---------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCC-CC
Confidence                     345666666666666666666666666553                    566666666666666666 55


Q ss_pred             HHhHHHHHHHHHH
Q psy9159         212 KENQLLIAKCYIE  224 (259)
Q Consensus       212 ~~~~~~la~~~~~  224 (259)
                      +..+..+|.+...
T Consensus       126 ~~~~~~~~~~~~~  138 (144)
T PRK15359        126 ASWSEIRQNAQIM  138 (144)
T ss_pred             hHHHHHHHHHHHH
Confidence            6666666655543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.74  E-value=4.4e-17  Score=125.79  Aligned_cols=119  Identities=13%  Similarity=0.047  Sum_probs=107.6

Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHH
Q psy9159          99 IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFER  178 (259)
Q Consensus        99 ~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~  178 (259)
                      ...++++++++|++   +..+|.++...|++.          ++...+++++.++|+++.+|+.+|.++...        
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~----------~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--------   71 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYS----------RAVIDFSWLVMAQPWSWRAHIALAGTWMML--------   71 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHH--------
Confidence            46799999999986   456788888888887          567899999999999999999999999875        


Q ss_pred             HHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159         179 KIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL  251 (259)
Q Consensus       179 ~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~  251 (259)
                                  |++++|+.+|.++++++| +++.+++++|.++..+|++++|++.|++++++.|++++.-..
T Consensus        72 ------------g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~  131 (144)
T PRK15359         72 ------------KEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEI  131 (144)
T ss_pred             ------------hhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence                        889999999999999999 789999999999999999999999999999999999865433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.72  E-value=8.8e-16  Score=145.61  Aligned_cols=179  Identities=12%  Similarity=0.020  Sum_probs=127.9

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI  121 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~  121 (259)
                      .. |++.+|+.+++.++...|+++++++.+|.+....|++.              +|++.++++++++|+++.++..+|.
T Consensus        54 ~~-g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~--------------~A~~~l~~~l~~~P~~~~a~~~la~  118 (656)
T PRK15174         54 RK-DETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPD--------------AVLQVVNKLLAVNVCQPEDVLLVAS  118 (656)
T ss_pred             hc-CCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHH--------------HHHHHHHHHHHhCCCChHHHHHHHH
Confidence            45 78888888888888888888888888887777777654              7777777777777777777777777


Q ss_pred             HHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchH-------------------------
Q psy9159         122 CVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFF-------------------------  176 (259)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~-------------------------  176 (259)
                      ++...|++.          .|...++++++++|+++.++..+|.++...++.+..                         
T Consensus       119 ~l~~~g~~~----------~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~  188 (656)
T PRK15174        119 VLLKSKQYA----------TVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFL  188 (656)
T ss_pred             HHHHcCCHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            777776665          345566666666666666666666665555443211                         


Q ss_pred             --------HHHHHHHHhcC---------------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHH---
Q psy9159         177 --------ERKIAVLIVSD---------------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAK---  230 (259)
Q Consensus       177 --------~~~~~~~~~~~---------------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~e---  230 (259)
                              ...+...+-..               ...|++++|+..|+++++++| ++..++..+|.++...|++++   
T Consensus       189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~  267 (656)
T PRK15174        189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKL  267 (656)
T ss_pred             HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHH
Confidence                    11111100000               125889999999999999999 678889999999999999986   


Q ss_pred             -HHHHHHHHhcCCCCCc
Q psy9159         231 -AVQWLDKAKAIPVVSY  246 (259)
Q Consensus       231 -A~~~~~kal~l~p~~~  246 (259)
                       |+..|+++++++|+++
T Consensus       268 ~A~~~~~~Al~l~P~~~  284 (656)
T PRK15174        268 QAAEHWRHALQFNSDNV  284 (656)
T ss_pred             HHHHHHHHHHhhCCCCH
Confidence             8999999999998765

>PLN02789 farnesyltranstransferase

Probab=99.72  E-value=4e-16  Score=135.16  Aligned_cols=162  Identities=12%  Similarity=0.060  Sum_probs=141.4

Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy9159          44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV  123 (259)
Q Consensus        44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~  123 (259)
                      .+++++|+..+.++|+.+|++..+|...+.++..+|..             +++++..+.++++.+|++..+|.+.+.++
T Consensus        50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~-------------l~eeL~~~~~~i~~npknyqaW~~R~~~l  116 (320)
T PLN02789         50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDAD-------------LEEELDFAEDVAEDNPKNYQIWHHRRWLA  116 (320)
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchh-------------HHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence            38999999999999999999999999999999988742             35999999999999999999999999998


Q ss_pred             HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159         124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA  203 (259)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA  203 (259)
                      ..++...        .......++++|++||+|..+|..+|.++...                    |++++|++++.++
T Consensus       117 ~~l~~~~--------~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l--------------------~~~~eeL~~~~~~  168 (320)
T PLN02789        117 EKLGPDA--------ANKELEFTRKILSLDAKNYHAWSHRQWVLRTL--------------------GGWEDELEYCHQL  168 (320)
T ss_pred             HHcCchh--------hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHH
Confidence            8777531        01346788999999999999999999887664                    7799999999999


Q ss_pred             HhhCCCCcHHhHHHHHHHHHHh---CCH----HHHHHHHHHHhcCCCCCcc
Q psy9159         204 EELAPAPWKENQLLIAKCYIEA---GEY----AKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       204 i~l~P~~~~~~~~~la~~~~~~---g~~----~eA~~~~~kal~l~p~~~~  247 (259)
                      |+++| .+..+|.+++.++..+   |++    ++++++.++++.++|.|..
T Consensus       169 I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S  218 (320)
T PLN02789        169 LEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES  218 (320)
T ss_pred             HHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC
Confidence            99999 7889999999998876   333    5789999999999998864

>KOG1155|consensus

Probab=99.72  E-value=9.2e-16  Score=133.72  Aligned_cols=171  Identities=15%  Similarity=0.153  Sum_probs=141.3

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhc----------------cc----CcHHHHHHHHHHHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKR----------------RE----NDKEASEKYILQGIEY  101 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~----------------~~----~~~~~~~~~~~~A~~~  101 (259)
                      .. .++++|++.|+++.+.+|-..+-+-....+++.+.+..+                ..    ++---..+..++|+.+
T Consensus       274 ~~-rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~Y  352 (559)
T KOG1155|consen  274 NQ-RDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMY  352 (559)
T ss_pred             hh-hhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHH
Confidence            55 899999999999999999776666666666655443111                00    1111335567899999


Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHH
Q psy9159         102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIA  181 (259)
Q Consensus       102 ~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~  181 (259)
                      |++|+++||....+|...|.=+..+.+..          .|++.|++|++++|.|..+|+.||..|-.+           
T Consensus       353 FkRALkLNp~~~~aWTLmGHEyvEmKNt~----------AAi~sYRrAvdi~p~DyRAWYGLGQaYeim-----------  411 (559)
T KOG1155|consen  353 FKRALKLNPKYLSAWTLMGHEYVEMKNTH----------AAIESYRRAVDINPRDYRAWYGLGQAYEIM-----------  411 (559)
T ss_pred             HHHHHhcCcchhHHHHHhhHHHHHhcccH----------HHHHHHHHHHhcCchhHHHHhhhhHHHHHh-----------
Confidence            99999999999999999998887776655          578999999999999999999999998776           


Q ss_pred             HHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         182 VLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       182 ~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                               +-..=|+-+|+||+++.| +.++.|..||.||.++++.++|+++|++|+.....
T Consensus       412 ---------~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt  464 (559)
T KOG1155|consen  412 ---------KMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT  464 (559)
T ss_pred             ---------cchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence                     336778899999999999 67899999999999999999999999999998755

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.71  E-value=7.5e-16  Score=125.09  Aligned_cols=124  Identities=14%  Similarity=0.127  Sum_probs=111.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH-
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV-  123 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~-  123 (259)
                      ++.++++..++++++.+|++++.|..+|.+|...|++.              +|+..++++++++|+++.++..+|.++ 
T Consensus        53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~--------------~A~~a~~~Al~l~P~~~~~~~~lA~aL~  118 (198)
T PRK10370         53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD--------------NALLAYRQALQLRGENAELYAALATVLY  118 (198)
T ss_pred             hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999875              999999999999999999999999976 


Q ss_pred             HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159         124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA  203 (259)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA  203 (259)
                      ...|+...        .++...++++++++|+++.+++.+|..+++.                    |++++|+.+|+++
T Consensus       119 ~~~g~~~~--------~~A~~~l~~al~~dP~~~~al~~LA~~~~~~--------------------g~~~~Ai~~~~~a  170 (198)
T PRK10370        119 YQAGQHMT--------PQTREMIDKALALDANEVTALMLLASDAFMQ--------------------ADYAQAIELWQKV  170 (198)
T ss_pred             HhcCCCCc--------HHHHHHHHHHHHhCCCChhHHHHHHHHHHHc--------------------CCHHHHHHHHHHH
Confidence            55565310        1578999999999999999999999999875                    8899999999999


Q ss_pred             HhhCCCC
Q psy9159         204 EELAPAP  210 (259)
Q Consensus       204 i~l~P~~  210 (259)
                      ++++|.+
T Consensus       171 L~l~~~~  177 (198)
T PRK10370        171 LDLNSPR  177 (198)
T ss_pred             HhhCCCC
Confidence            9999843

>KOG1173|consensus

Probab=99.71  E-value=1.1e-15  Score=135.98  Aligned_cols=190  Identities=17%  Similarity=0.139  Sum_probs=141.6

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      |+..+-+.+-.+....+|+.+-.|+..|.-|...|+              +++|+.++-||..+||....+|..+|..+.
T Consensus       292 ~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k--------------~seARry~SKat~lD~~fgpaWl~fghsfa  357 (611)
T KOG1173|consen  292 GKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGK--------------YSEARRYFSKATTLDPTFGPAWLAFGHSFA  357 (611)
T ss_pred             cccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC--------------cHHHHHHHHHHhhcCccccHHHHHHhHHhh
Confidence            444444444444455555555555555555555444              469999999999999999999999999998


Q ss_pred             HhhchhhHHHH------------------------HhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHH
Q psy9159         125 ANGQFQSLKEK------------------------IKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKI  180 (259)
Q Consensus       125 ~~~~~~~~~~~------------------------~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~  180 (259)
                      ..+.-+.+...                        ..+...|.+.+..|+.+.|++|.+.+.+|.+.+..+.++.+.+-+
T Consensus       358 ~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f  437 (611)
T KOG1173|consen  358 GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYF  437 (611)
T ss_pred             hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHH
Confidence            87766544321                        233346778999999999999999999999888765544322222


Q ss_pred             HHHH----------------h---cC--CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159         181 AVLI----------------V---SD--LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK  239 (259)
Q Consensus       181 ~~~~----------------~---~~--~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal  239 (259)
                      ..++                .   |.  -..+++++||.+|++++.+.| .++.++..+|.+|..+|+++.|++.|.|++
T Consensus       438 ~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL  516 (611)
T KOG1173|consen  438 QKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKAL  516 (611)
T ss_pred             HHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            2111                0   00  125889999999999999999 779999999999999999999999999999


Q ss_pred             cCCCCCccch
Q psy9159         240 AIPVVSYESH  249 (259)
Q Consensus       240 ~l~p~~~~~~  249 (259)
                      .++|+|.--.
T Consensus       517 ~l~p~n~~~~  526 (611)
T KOG1173|consen  517 ALKPDNIFIS  526 (611)
T ss_pred             hcCCccHHHH
Confidence            9999985433

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.71  E-value=1.4e-15  Score=147.17  Aligned_cols=165  Identities=16%  Similarity=0.161  Sum_probs=86.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      |++++|+..+++++...|++ +++..++.++...|+..              +|...++++++.+|+++.++..+|.++.
T Consensus       717 g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~--------------~A~~~~~~~l~~~~~~~~~~~~la~~~~  781 (899)
T TIGR02917       717 KDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTA--------------EAVKTLEAWLKTHPNDAVLRTALAELYL  781 (899)
T ss_pred             CCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            66666666666666666655 45555666666666543              5555555555555555555555555555


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccch----HHHHHH-------------HHHhcC
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF----FERKIA-------------VLIVSD  187 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~----~~~~~~-------------~~~~~~  187 (259)
                      ..|++.          ++...|+++++.+|+++.++..+|.++...++ +.    +.+.+.             ..+   
T Consensus       782 ~~g~~~----------~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~---  847 (899)
T TIGR02917       782 AQKDYD----------KAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLL---  847 (899)
T ss_pred             HCcCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH---
Confidence            555544          23445555555555555555555554443211 00    000000             000   


Q ss_pred             CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159         188 LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK  239 (259)
Q Consensus       188 ~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal  239 (259)
                      ...|++++|+++|+++++++| .++.++..+|.++...|++++|++.+++++
T Consensus       848 ~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       848 VEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            002556666666666666666 455556666666666666666666666554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.70  E-value=5.8e-16  Score=151.16  Aligned_cols=156  Identities=15%  Similarity=0.074  Sum_probs=145.4

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      |++++|+..++++++.+|+ ++++..+|.++...|++.              +|+..++++++++|+++.++..+|.++.
T Consensus       590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~d--------------eA~~~l~~AL~l~Pd~~~a~~nLG~aL~  654 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVP--------------AAVSDLRAALELEPNNSNYQAALGYALW  654 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            8999999999999999996 889999999999988875              9999999999999999999999999999


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE  204 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi  204 (259)
                      ..|++.          .++..++++++++|+++.+++.+|.++...                    |++++|+.+|++|+
T Consensus       655 ~~G~~e----------eAi~~l~~AL~l~P~~~~a~~nLA~al~~l--------------------Gd~~eA~~~l~~Al  704 (987)
T PRK09782        655 DSGDIA----------QSREMLERAHKGLPDDPALIRQLAYVNQRL--------------------DDMAATQHYARLVI  704 (987)
T ss_pred             HCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHH
Confidence            999887          567899999999999999999999999875                    88999999999999


Q ss_pred             hhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         205 ELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       205 ~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      +++| ++..+....|.+.....++..|.+.+.++..++|...
T Consensus       705 ~l~P-~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~  745 (987)
T PRK09782        705 DDID-NQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS  745 (987)
T ss_pred             hcCC-CCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence            9999 7889999999999999999999999999999998765

>KOG1126|consensus

Probab=99.70  E-value=1.9e-16  Score=143.11  Aligned_cols=176  Identities=15%  Similarity=0.112  Sum_probs=123.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      ++++.|+..|+++++.||...-+|-.+|-=+..              .+.++.|...|++||..+|.+..||+.+|.++.
T Consensus       435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~--------------~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~  500 (638)
T KOG1126|consen  435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA--------------TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL  500 (638)
T ss_pred             hHHHHHHHHHHHhhccCCccchhhhhcCChhhh--------------hHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence            899999999999999999877655544433333              345679999999999999999999999999999


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC--------------CC
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL--------------DE  190 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--------------~~  190 (259)
                      +.++++          .|.-++++|+++||.+.....-+|.++.+++..+...+-+..++-..+              ..
T Consensus       501 Kqek~e----------~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~  570 (638)
T KOG1126|consen  501 KQEKLE----------FAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL  570 (638)
T ss_pred             ccchhh----------HHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence            888777          456778888888888888888888888776543322211111111000              03


Q ss_pred             CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159         191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~  245 (259)
                      +++++|+..+++.-++-| +...++.-+|.+|..+|+.+.|+..|--|..++|.-
T Consensus       571 ~~~~eal~~LEeLk~~vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  571 GRYVEALQELEELKELVP-QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             cchHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            666666666666666666 556666666666666666666666666666666653

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.69  E-value=1.6e-15  Score=123.14  Aligned_cols=125  Identities=14%  Similarity=0.115  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHH-HHhhcc
Q psy9159          95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQ-YEISKL  173 (259)
Q Consensus        95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~-~~~~~~  173 (259)
                      .++++..++++++.+|+|+++|..+|.++...+++.          .|...|++|++++|+++.++..+|.++ ...   
T Consensus        55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~----------~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~---  121 (198)
T PRK10370         55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD----------NALLAYRQALQLRGENAELYAALATVLYYQA---  121 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---
Confidence            468899999999999999999999999999999887          567899999999999999999999975 443   


Q ss_pred             chHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchh
Q psy9159         174 SFFERKIAVLIVSDLDEPT--AEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHD  250 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~g~--~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~  250 (259)
                                       |+  +++|+..++++++++| +++.+++.+|.++...|++++|+.+++++++++|.+++-..
T Consensus       122 -----------------g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~  182 (198)
T PRK10370        122 -----------------GQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQ  182 (198)
T ss_pred             -----------------CCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence                             44  6999999999999999 78999999999999999999999999999999988775443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.69  E-value=3.5e-15  Score=149.84  Aligned_cols=196  Identities=12%  Similarity=0.083  Sum_probs=128.2

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      ..+..+.  .. |++++|+..|+++++.+|+++.+++.+|.+|...|++.              +|+..++++++++|++
T Consensus       466 ~~a~~~~--~~-g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~--------------~A~~~l~~al~~~P~~  528 (1157)
T PRK11447        466 QQAEALE--NQ-GKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRS--------------QADALMRRLAQQKPND  528 (1157)
T ss_pred             HHHHHHH--HC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHcCCCC
Confidence            3455555  56 99999999999999999999999999999999999875              9999999999999999


Q ss_pred             hHHHHHHHHHHHHhhchhhHHHHHhcHH----------------------HH--------HHHHHHHHccCCCChhHHHH
Q psy9159         113 SNTQKWYGICVGANGQFQSLKEKIKCGV----------------------VF--------RDQMNKAIQMAPKDFTLYSL  162 (259)
Q Consensus       113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~----------------------~a--------~~~~~kAl~l~P~~~~~~~~  162 (259)
                      +.+++.++..+...++...+...+....                      .+        .+...+.++.+|+++.++..
T Consensus       529 ~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~  608 (1157)
T PRK11447        529 PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLT  608 (1157)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHH
Confidence            9999888887766665544332211100                      00        00112234456666666666


Q ss_pred             HHHHHHHhhccchHHHHHHHHHhcCC--------------CCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCH
Q psy9159         163 KGRYQYEISKLSFFERKIAVLIVSDL--------------DEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEY  228 (259)
Q Consensus       163 lG~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~  228 (259)
                      +|.++.+.++.......+..++...|              ..|++++|+.+++++++..| ++...+..+|.++...|++
T Consensus       609 La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~  687 (1157)
T PRK11447        609 LADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQRRVALAWAALGDT  687 (1157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCH
Confidence            66666665443222211111111000              13666666666666666666 5566666666666666666


Q ss_pred             HHHHHHHHHHhcCCCCCc
Q psy9159         229 AKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       229 ~eA~~~~~kal~l~p~~~  246 (259)
                      ++|++.|++++...|.++
T Consensus       688 ~eA~~~~~~al~~~~~~~  705 (1157)
T PRK11447        688 AAAQRTFNRLIPQAKSQP  705 (1157)
T ss_pred             HHHHHHHHHHhhhCccCC
Confidence            667666666666655444

>KOG0547|consensus

Probab=99.68  E-value=1.8e-15  Score=132.75  Aligned_cols=155  Identities=19%  Similarity=0.113  Sum_probs=145.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      |++-.|.+.+..+|+.+|.++..|+.+|.+|.+..+..              +....|.+|..+||+|++.+++.|.+..
T Consensus       340 g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~--------------~~~~~F~~A~~ldp~n~dvYyHRgQm~f  405 (606)
T KOG0547|consen  340 GDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSE--------------KMWKDFNKAEDLDPENPDVYYHRGQMRF  405 (606)
T ss_pred             CCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccH--------------HHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence            99999999999999999999999999999999887764              8899999999999999999999999999


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE  204 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi  204 (259)
                      .+++++          .|...|+++++|+|++.-++..++-..++.                    ++++++...|+.++
T Consensus       406 lL~q~e----------~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~--------------------~k~~~~m~~Fee~k  455 (606)
T KOG0547|consen  406 LLQQYE----------EAIADFQKAISLDPENAYAYIQLCCALYRQ--------------------HKIAESMKTFEEAK  455 (606)
T ss_pred             HHHHHH----------HHHHHHHHHhhcChhhhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHH
Confidence            888887          567899999999999999999999888875                    67999999999999


Q ss_pred             hhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         205 ELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       205 ~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      .--| ..++++..-|.++..+++|++|++.|++|+++.|.
T Consensus       456 kkFP-~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  456 KKFP-NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HhCC-CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence            9999 78999999999999999999999999999999988

>KOG2076|consensus

Probab=99.67  E-value=1.3e-14  Score=134.99  Aligned_cols=211  Identities=16%  Similarity=0.189  Sum_probs=155.0

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------cCcH---------H
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------ENDK---------E   89 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~~~~---------~   89 (259)
                      ..+.+|+.+|  .. |++++|..++.++|+.+|.++.+|+.||.+|-+.|+..+.           +.+.         .
T Consensus       141 ~ll~eAN~lf--ar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  141 QLLGEANNLF--AR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHH--Hh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            4577888888  55 9999999999999999999999999999999999986631           2332         2


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh------hHHHHH
Q psy9159          90 ASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF------TLYSLK  163 (259)
Q Consensus        90 ~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~------~~~~~l  163 (259)
                      +..+++++|+-+|.+||..+|.+....+..+.++.+.|+..          .+.+.+.+++.++|...      .++.. 
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~----------~Am~~f~~l~~~~p~~d~er~~d~i~~~-  286 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLK----------RAMETFLQLLQLDPPVDIERIEDLIRRV-  286 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHH----------HHHHHHHHHHhhCCchhHHHHHHHHHHH-
Confidence            45677889999999999999999888888888887777765          46678888889888211      11100 


Q ss_pred             HHHHHHhhc--------------------cc-------------hHHHHHHHH---------------------------
Q psy9159         164 GRYQYEISK--------------------LS-------------FFERKIAVL---------------------------  183 (259)
Q Consensus       164 G~~~~~~~~--------------------~~-------------~~~~~~~~~---------------------------  183 (259)
                      ...+....+                    .+             .+.++....                           
T Consensus       287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~  366 (895)
T KOG2076|consen  287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA  366 (895)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence            000000000                    00             000000000                           


Q ss_pred             Hhc------------------------------------------------------CCCCCcHHHHHHHHHHHHhhCCC
Q psy9159         184 IVS------------------------------------------------------DLDEPTAEDAIANCLKAEELAPA  209 (259)
Q Consensus       184 ~~~------------------------------------------------------~~~~g~~~eAi~~~~kAi~l~P~  209 (259)
                      ++.                                                      .+..|++.+|+.+|...+...+.
T Consensus       367 ~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~  446 (895)
T KOG2076|consen  367 LCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY  446 (895)
T ss_pred             cccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence            000                                                      00159999999999999999997


Q ss_pred             CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhhh
Q psy9159         210 PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLSTT  254 (259)
Q Consensus       210 ~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~~  254 (259)
                      ++..+|..+|.||+.+|.+++|++.|.+++.+.|++.+.+-.+.+
T Consensus       447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Las  491 (895)
T KOG2076|consen  447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLAS  491 (895)
T ss_pred             cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHH
Confidence            777889999999999999999999999999999999987765544

>PLN02789 farnesyltranstransferase

Probab=99.66  E-value=5.5e-15  Score=128.09  Aligned_cols=166  Identities=8%  Similarity=0.019  Sum_probs=139.9

Q ss_pred             C-CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy9159          45 D-DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV  123 (259)
Q Consensus        45 ~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~  123 (259)
                      | +++++++.+.++++.+|++..+|+..+.++..+|...            .++++++++++++++|+|..+|...++++
T Consensus        85 ~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~------------~~~el~~~~kal~~dpkNy~AW~~R~w~l  152 (320)
T PLN02789         85 DADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA------------ANKELEFTRKILSLDAKNYHAWSHRQWVL  152 (320)
T ss_pred             chhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh------------hHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            5 6899999999999999999999999999998887531            24789999999999999999999999999


Q ss_pred             HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159         124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA  203 (259)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA  203 (259)
                      ..++.+.          .+++.++++|++||.|..+|+.+|.+...++.+..             .....++++++..++
T Consensus       153 ~~l~~~~----------eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~-------------~~~~~e~el~y~~~a  209 (320)
T PLN02789        153 RTLGGWE----------DELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG-------------LEAMRDSELKYTIDA  209 (320)
T ss_pred             HHhhhHH----------HHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc-------------ccccHHHHHHHHHHH
Confidence            9998876          46789999999999999999999988765422100             011246789999999


Q ss_pred             HhhCCCCcHHhHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCCCc
Q psy9159         204 EELAPAPWKENQLLIAKCYIE----AGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       204 i~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      |.++| ++..+|.+++.++..    +++..+|++.+.+++..+|.+.
T Consensus       210 I~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~  255 (320)
T PLN02789        210 ILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV  255 (320)
T ss_pred             HHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence            99999 788999999999988    5667789999999998877643

>KOG0547|consensus

Probab=99.66  E-value=6.3e-15  Score=129.31  Aligned_cols=185  Identities=15%  Similarity=0.154  Sum_probs=149.7

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP  110 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P  110 (259)
                      .+..+..+.  .. .+-++-+..|.++...+|+||++|+..|.+++-++++.              +|+.-|++|+.++|
T Consensus       363 yI~~a~~y~--d~-~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e--------------~A~aDF~Kai~L~p  425 (606)
T KOG0547|consen  363 YIKRAAAYA--DE-NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYE--------------EAIADFQKAISLDP  425 (606)
T ss_pred             HHHHHHHHh--hh-hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHH--------------HHHHHHHHHhhcCh
Confidence            344554444  44 88999999999999999999999999999999988875              99999999999999


Q ss_pred             CChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHH--------
Q psy9159         111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAV--------  182 (259)
Q Consensus       111 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~--------  182 (259)
                      +|.-++..++.++.+.+.+.          .....|+.+++..|+-++++...|.++...+++....+....        
T Consensus       426 e~~~~~iQl~~a~Yr~~k~~----------~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~  495 (606)
T KOG0547|consen  426 ENAYAYIQLCCALYRQHKIA----------ESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE  495 (606)
T ss_pred             hhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence            99999999999988887665          345677888888888888888888877766655433222211        


Q ss_pred             -------------HHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159         183 -------------LIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV  243 (259)
Q Consensus       183 -------------~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p  243 (259)
                                   ++.-..+++++..|+..+.+|+++|| ..-.++-.||.+....|+.++|+++|++++.+.-
T Consensus       496 ~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr  568 (606)
T KOG0547|consen  496 HLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR  568 (606)
T ss_pred             ccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence                         11111246999999999999999999 7788999999999999999999999999988753

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.66  E-value=2.5e-14  Score=116.85  Aligned_cols=156  Identities=17%  Similarity=0.131  Sum_probs=139.2

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC--CCChHHHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA--PNNSNTQKWY  119 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~--P~~~~~~~~l  119 (259)
                      .. |++++|++.++++++.+|+++.++..+|.++...|++.              +|+..+++++...  |..+..+..+
T Consensus        77 ~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~--------------~A~~~~~~~~~~~~~~~~~~~~~~l  141 (234)
T TIGR02521        77 QL-GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYE--------------QAMQQFEQAIEDPLYPQPARSLENA  141 (234)
T ss_pred             Hc-CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHH--------------HHHHHHHHHHhccccccchHHHHHH
Confidence            45 99999999999999999999999999999999999875              9999999999864  5667788889


Q ss_pred             HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHH
Q psy9159         120 GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIAN  199 (259)
Q Consensus       120 a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~  199 (259)
                      |.++...|++.          .+...++++++.+|+++.++..+|.+++..                    |++++|+.+
T Consensus       142 ~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------------~~~~~A~~~  191 (234)
T TIGR02521       142 GLCALKAGDFD----------KAEKYLTRALQIDPQRPESLLELAELYYLR--------------------GQYKDARAY  191 (234)
T ss_pred             HHHHHHcCCHH----------HHHHHHHHHHHhCcCChHHHHHHHHHHHHc--------------------CCHHHHHHH
Confidence            99998888876          567899999999999999999999998874                    889999999


Q ss_pred             HHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159         200 CLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV  243 (259)
Q Consensus       200 ~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p  243 (259)
                      +++++++.| +.+..+..++.++...|+.++|..+.+.+....|
T Consensus       192 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       192 LERYQQTYN-QTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             HHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence            999999988 6788888899999999999999999988877654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.66  E-value=1.9e-15  Score=129.21  Aligned_cols=152  Identities=21%  Similarity=0.257  Sum_probs=106.6

Q ss_pred             CCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQ--PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGIC  122 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~  122 (259)
                      ++++++.+.++++....  |.++.+|..+|.++...|+..              +|+..++++++++|+|+.++..++++
T Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~--------------~A~~~~~~al~~~P~~~~~~~~l~~~  189 (280)
T PF13429_consen  124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD--------------KALRDYRKALELDPDDPDARNALAWL  189 (280)
T ss_dssp             T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH--------------HHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            88888888888876544  678888888888888888764              99999999999999999999999988


Q ss_pred             HHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q psy9159         123 VGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLK  202 (259)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~k  202 (259)
                      +...|+...          +.+.++...+..|+++..|..+|.++..+                    |++++|+.+|++
T Consensus       190 li~~~~~~~----------~~~~l~~~~~~~~~~~~~~~~la~~~~~l--------------------g~~~~Al~~~~~  239 (280)
T PF13429_consen  190 LIDMGDYDE----------AREALKRLLKAAPDDPDLWDALAAAYLQL--------------------GRYEEALEYLEK  239 (280)
T ss_dssp             HCTTCHHHH----------HHHHHHHHHHH-HTSCCHCHHHHHHHHHH--------------------T-HHHHHHHHHH
T ss_pred             HHHCCChHH----------HHHHHHHHHHHCcCHHHHHHHHHHHhccc--------------------cccccccccccc
Confidence            887777652          34555565666699999999999988886                    789999999999


Q ss_pred             HHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         203 AEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       203 Ai~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                      ++..+| +++.+...+|.++...|+.++|.+.+++++..
T Consensus       240 ~~~~~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  240 ALKLNP-DDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHST-T-HHHHHHHHHHHT------------------
T ss_pred             cccccc-cccccccccccccccccccccccccccccccc
Confidence            999999 77999999999999999999999999998753

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.66  E-value=2.4e-14  Score=127.57  Aligned_cols=200  Identities=14%  Similarity=0.121  Sum_probs=114.6

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc----------c-CcHH-----------
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR----------E-NDKE-----------   89 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~----------~-~~~~-----------   89 (259)
                      +..+....  .. |++++|+..+.++++.+|++++++..+|.++...|++.+.          + ....           
T Consensus        39 y~~g~~~~--~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~  115 (389)
T PRK11788         39 YFKGLNFL--LN-EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ  115 (389)
T ss_pred             HHHHHHHH--hc-CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            34444444  46 9999999999999999999999999999999999887521          0 0000           


Q ss_pred             --HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChh-----HHHH
Q psy9159          90 --ASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT-----LYSL  162 (259)
Q Consensus        90 --~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~-----~~~~  162 (259)
                        ...+.+++|+..++++++.+|.+..++..++.++...|++.          ++.+.++++++.+|.+..     .+..
T Consensus       116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~~~  185 (389)
T PRK11788        116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQ----------KAIDVAERLEKLGGDSLRVEIAHFYCE  185 (389)
T ss_pred             HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHH----------HHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence              11234566666666666666666666666666666555554          345566666666665432     3445


Q ss_pred             HHHHHHHhhccchHHHHHHHHHh------------c--CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCH
Q psy9159         163 KGRYQYEISKLSFFERKIAVLIV------------S--DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEY  228 (259)
Q Consensus       163 lG~~~~~~~~~~~~~~~~~~~~~------------~--~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~  228 (259)
                      +|..+...++.....+.+..++-            +  ....|++++|++.|+++++.+|.+...++..++.+|...|++
T Consensus       186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~  265 (389)
T PRK11788        186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE  265 (389)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence            55555554443222111111100            0  011355555555555555555522223445555555555555


Q ss_pred             HHHHHHHHHHhcCCCC
Q psy9159         229 AKAVQWLDKAKAIPVV  244 (259)
Q Consensus       229 ~eA~~~~~kal~l~p~  244 (259)
                      ++|++.++++++..|+
T Consensus       266 ~~A~~~l~~~~~~~p~  281 (389)
T PRK11788        266 AEGLEFLRRALEEYPG  281 (389)
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            5555555555555543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.65  E-value=1.3e-14  Score=129.28  Aligned_cols=178  Identities=14%  Similarity=0.024  Sum_probs=127.2

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChH-----HH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSN-----TQ  116 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~-----~~  116 (259)
                      .. |++++|+..++++++.+|.+..++..++.++...|++              ++|++.++++++..|++..     .+
T Consensus       119 ~~-g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~--------------~~A~~~~~~~~~~~~~~~~~~~~~~~  183 (389)
T PRK11788        119 KA-GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDW--------------QKAIDVAERLEKLGGDSLRVEIAHFY  183 (389)
T ss_pred             HC-CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchH--------------HHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            44 7777777777777777777777777777777766665              4888888888888776543     23


Q ss_pred             HHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHh-----------
Q psy9159         117 KWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIV-----------  185 (259)
Q Consensus       117 ~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~-----------  185 (259)
                      ..+|.++...+++.          .+...++++++++|++..+++.+|.++...++.....+.+..+..           
T Consensus       184 ~~la~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  253 (389)
T PRK11788        184 CELAQQALARGDLD----------AARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLP  253 (389)
T ss_pred             HHHHHHHHhCCCHH----------HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHH
Confidence            34455555555554          456777888888888888888888887777664332222111110           


Q ss_pred             ----cCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         186 ----SDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       186 ----~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                          .....|++++|+..++++++.+| +. ..+..+|.++...|++++|+..++++++..|++.
T Consensus       254 ~l~~~~~~~g~~~~A~~~l~~~~~~~p-~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~  316 (389)
T PRK11788        254 KLMECYQALGDEAEGLEFLRRALEEYP-GA-DLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR  316 (389)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC-Cc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence                01125999999999999999999 54 4458899999999999999999999999987765

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.64  E-value=2.2e-14  Score=135.54  Aligned_cols=154  Identities=14%  Similarity=0.046  Sum_probs=139.4

Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q psy9159          46 DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGA  125 (259)
Q Consensus        46 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~  125 (259)
                      ...+++.-+......+|++++++++||.+....|.++              +|+..++.+++++|++..++..++.++.+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~--------------ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~  132 (694)
T PRK15179         67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSD--------------EGLAVWRGIHQRFPDSSEAFILMLRGVKR  132 (694)
T ss_pred             chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcH--------------HHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence            3445555556666789999999999999999999875              99999999999999999999999999999


Q ss_pred             hhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHh
Q psy9159         126 NGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEE  205 (259)
Q Consensus       126 ~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~  205 (259)
                      .+.++          +|...+++++..+|+++.+++.+|.++.++                    |++++|+.+|++++.
T Consensus       133 ~~~~e----------eA~~~~~~~l~~~p~~~~~~~~~a~~l~~~--------------------g~~~~A~~~y~~~~~  182 (694)
T PRK15179        133 QQGIE----------AGRAEIELYFSGGSSSAREILLEAKSWDEI--------------------GQSEQADACFERLSR  182 (694)
T ss_pred             hccHH----------HHHHHHHHHhhcCCCCHHHHHHHHHHHHHh--------------------cchHHHHHHHHHHHh
Confidence            98887          567888999999999999999999988775                    889999999999999


Q ss_pred             hCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         206 LAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       206 l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      .+| +...++..+|.++...|+.++|...|++|++....
T Consensus       183 ~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        183 QHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence            999 77999999999999999999999999999987643

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.63  E-value=8.5e-15  Score=111.31  Aligned_cols=122  Identities=17%  Similarity=0.110  Sum_probs=110.9

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHH
Q psy9159         100 EYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERK  179 (259)
Q Consensus       100 ~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~  179 (259)
                      +.++++++++|++..+...+|.++...+++.          .+...+++++.++|+++.+|..+|.++...         
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~----------~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---------   64 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYD----------EALKLFQLLAAYDPYNSRYWLGLAACCQML---------   64 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHH---------
Confidence            4688999999999999999999999898876          567889999999999999999999999875         


Q ss_pred             HHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         180 IAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       180 ~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                                 |++++|+.+++++++++| .+...++.+|.++...|++++|+++++++++++|++.+-+.+.
T Consensus        65 -----------~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  125 (135)
T TIGR02552        65 -----------KEYEEAIDAYALAAALDP-DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELK  125 (135)
T ss_pred             -----------HHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence                       779999999999999999 7789999999999999999999999999999999888755443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0624|consensus

Probab=99.59  E-value=2.6e-13  Score=114.83  Aligned_cols=222  Identities=14%  Similarity=0.155  Sum_probs=148.6

Q ss_pred             ccCCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc----------cCc---------
Q psy9159          27 VNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR----------END---------   87 (259)
Q Consensus        27 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~----------~~~---------   87 (259)
                      ..+..++.+..++  .. |++..|+..|..+++.+|++..++++.|-+|..+|+....          ++|         
T Consensus        37 dvekhlElGk~ll--a~-~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg  113 (504)
T KOG0624|consen   37 DVEKHLELGKELL--AR-GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG  113 (504)
T ss_pred             HHHHHHHHHHHHH--Hh-hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence            3455688888999  67 9999999999999999999999999999999999975410          111         


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHH------------hhchhhHHHHHh--------------
Q psy9159          88 -KEASEKYILQGIEYAKKAMELAPNNS---NTQKWYGICVGA------------NGQFQSLKEKIK--------------  137 (259)
Q Consensus        88 -~~~~~~~~~~A~~~~~kal~~~P~~~---~~~~~la~~~~~------------~~~~~~~~~~~~--------------  137 (259)
                       ..-+.+.+++|..-|...|.-+|.+.   ++.-.++.+...            .|+...+...+.              
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~  193 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ  193 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence             12345667888888888888888443   222222222111            122222221111              


Q ss_pred             ----------cHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc---------------------hH----------
Q psy9159         138 ----------CGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS---------------------FF----------  176 (259)
Q Consensus       138 ----------~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~---------------------~~----------  176 (259)
                                ....|+..++.+-+|..++.+.++.++.+++..++..                     ++          
T Consensus       194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l  273 (504)
T KOG0624|consen  194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL  273 (504)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence                      1113344555555566666666666666665554421                     11          


Q ss_pred             ---HHHHH------------HHHhcC------------------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHH
Q psy9159         177 ---ERKIA------------VLIVSD------------------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYI  223 (259)
Q Consensus       177 ---~~~~~------------~~~~~~------------------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~  223 (259)
                         +.++.            ..+...                  ...|++.+||....++++++| ++..++..+|.+|+
T Consensus       274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~l~dRAeA~l  352 (504)
T KOG0624|consen  274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQVLCDRAEAYL  352 (504)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHh
Confidence               11110            011111                  125899999999999999999 78999999999999


Q ss_pred             HhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         224 EAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       224 ~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                      ....|+.||..|++|.+.++.|...++.+
T Consensus       353 ~dE~YD~AI~dye~A~e~n~sn~~~reGl  381 (504)
T KOG0624|consen  353 GDEMYDDAIHDYEKALELNESNTRAREGL  381 (504)
T ss_pred             hhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            99999999999999999999988765543

>KOG1125|consensus

Probab=99.59  E-value=3.2e-14  Score=127.07  Aligned_cols=144  Identities=10%  Similarity=0.026  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhh
Q psy9159          92 EKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEIS  171 (259)
Q Consensus        92 ~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~  171 (259)
                      .+.+.+|.-.++.|+..+|++.++|.+||.+....++-.          .++..+++|+++||+|-.++..|+..|...+
T Consensus       298 nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~----------~ai~AL~rcl~LdP~NleaLmaLAVSytNeg  367 (579)
T KOG1125|consen  298 NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQ----------NAISALRRCLELDPTNLEALMALAVSYTNEG  367 (579)
T ss_pred             cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchH----------HHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence            344679999999999999999999999999998776543          4678999999999999999999998774432


Q ss_pred             cc--------chHH-----------------------------HHHHHHHh----cCC----------------CCCcHH
Q psy9159         172 KL--------SFFE-----------------------------RKIAVLIV----SDL----------------DEPTAE  194 (259)
Q Consensus       172 ~~--------~~~~-----------------------------~~~~~~~~----~~~----------------~~g~~~  194 (259)
                      .-        .|+.                             ..+...+.    ..+                -.|.|+
T Consensus       368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd  447 (579)
T KOG1125|consen  368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD  447 (579)
T ss_pred             hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence            20        0110                             01110000    000                158999


Q ss_pred             HHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         195 DAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       195 eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      .|++||+-|++.+| ++...|..||.++....+.++|+..|++|+++.|.--
T Consensus       448 raiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV  498 (579)
T KOG1125|consen  448 RAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV  498 (579)
T ss_pred             HHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee
Confidence            99999999999999 6688899999999999999999999999999998754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.58  E-value=1.2e-14  Score=124.33  Aligned_cols=171  Identities=17%  Similarity=0.106  Sum_probs=99.6

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc----------cCc---------HHHHHHHHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR----------END---------KEASEKYILQGIEYAKKA  105 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~----------~~~---------~~~~~~~~~~A~~~~~ka  105 (259)
                      +++++|+..|++++..+|.++..+.+++.. ...+++.+.          ..+         .....+.++++.+.++++
T Consensus        58 ~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~  136 (280)
T PF13429_consen   58 GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKL  136 (280)
T ss_dssp             -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence            777788888888887777777777777666 444444321          000         012334567888888887


Q ss_pred             HHhC--CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHH
Q psy9159         106 MELA--PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVL  183 (259)
Q Consensus       106 l~~~--P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~  183 (259)
                      ....  |+++..|..+|.++...|+..          +|.+.+++|++++|+++.+...++.++...             
T Consensus       137 ~~~~~~~~~~~~~~~~a~~~~~~G~~~----------~A~~~~~~al~~~P~~~~~~~~l~~~li~~-------------  193 (280)
T PF13429_consen  137 EELPAAPDSARFWLALAEIYEQLGDPD----------KALRDYRKALELDPDDPDARNALAWLLIDM-------------  193 (280)
T ss_dssp             HH-T---T-HHHHHHHHHHHHHCCHHH----------HHHHHHHHHHHH-TT-HHHHHHHHHHHCTT-------------
T ss_pred             HhccCCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-------------
Confidence            7655  678888888999999888876          578999999999999999999999877553             


Q ss_pred             HhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         184 IVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       184 ~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                             |+++++...++...+..| .++..+..+|.++..+|++++|+.++++++..+|+|+.
T Consensus       194 -------~~~~~~~~~l~~~~~~~~-~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~  249 (280)
T PF13429_consen  194 -------GDYDEAREALKRLLKAAP-DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL  249 (280)
T ss_dssp             -------CHHHHHHHHHHHHHHH-H-TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred             -------CChHHHHHHHHHHHHHCc-CHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence                   788888888888777777 55677889999999999999999999999999987773

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.57  E-value=1.3e-13  Score=133.07  Aligned_cols=153  Identities=14%  Similarity=0.074  Sum_probs=142.0

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      |+.++|++.+.++...+|..+.++..+|.++...|++.              +|+..++++++++|+++.++..++.++.
T Consensus        29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~--------------~A~~~~~~al~~~P~~~~a~~~la~~l~   94 (765)
T PRK10049         29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQ--------------NSLTLWQKALSLEPQNDDYQRGLILTLA   94 (765)
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999989999999999999999999875              9999999999999999999999999999


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE  204 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi  204 (259)
                      ..+++.          .+...++++++.+|+++. +..+|.++...                    |++++|+..+++++
T Consensus        95 ~~g~~~----------eA~~~l~~~l~~~P~~~~-~~~la~~l~~~--------------------g~~~~Al~~l~~al  143 (765)
T PRK10049         95 DAGQYD----------EALVKAKQLVSGAPDKAN-LLALAYVYKRA--------------------GRHWDELRAMTQAL  143 (765)
T ss_pred             HCCCHH----------HHHHHHHHHHHhCCCCHH-HHHHHHHHHHC--------------------CCHHHHHHHHHHHH
Confidence            888887          567899999999999999 99999988764                    88999999999999


Q ss_pred             hhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         205 ELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       205 ~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      +++| ++..++..+|.++...|+.++|++.++++.. .|.
T Consensus       144 ~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~  181 (765)
T PRK10049        144 PRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPA  181 (765)
T ss_pred             HhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHH
Confidence            9999 7899999999999999999999999998887 544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.57  E-value=1.6e-13  Score=131.85  Aligned_cols=179  Identities=11%  Similarity=0.018  Sum_probs=141.1

Q ss_pred             hhhhhhhhhccCCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHH
Q psy9159          18 FGECAELFAVNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQ   97 (259)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~   97 (259)
                      .|.....+........++...+  .+ |++..|++.|+++++.+|+++.....++.++...|+..              +
T Consensus        24 ~~~~~~~p~~~~~~y~~aii~~--r~-Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~--------------~   86 (822)
T PRK14574         24 ISGFVVNPAMADTQYDSLIIRA--RA-GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQ--------------E   86 (822)
T ss_pred             HcccccCccchhHHHHHHHHHH--hC-CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcH--------------H
Confidence            3333333444456677787787  67 99999999999999999999644448888888888875              9


Q ss_pred             HHHHHHHHHHhCCCChHHHHHH--HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccch
Q psy9159          98 GIEYAKKAMELAPNNSNTQKWY--GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF  175 (259)
Q Consensus        98 A~~~~~kal~~~P~~~~~~~~l--a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~  175 (259)
                      |+.++++++  +|++...+..+  |.++...|++.          .|.+.|+++++++|+++.++..++..+...     
T Consensus        87 A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd----------~Aiely~kaL~~dP~n~~~l~gLa~~y~~~-----  149 (822)
T PRK14574         87 VIDVYERYQ--SSMNISSRGLASAARAYRNEKRWD----------QALALWQSSLKKDPTNPDLISGMIMTQADA-----  149 (822)
T ss_pred             HHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhhCCCCHHHHHHHHHHHhhc-----
Confidence            999999999  66665555555  66888888887          577999999999999999998777766653     


Q ss_pred             HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         176 FERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                                     ++.++|++.+++++..+| .+.. +..++.++...++..+|++.++++++.+|++.+
T Consensus       150 ---------------~q~~eAl~~l~~l~~~dp-~~~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e  204 (822)
T PRK14574        150 ---------------GRGGVVLKQATELAERDP-TVQN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSEE  204 (822)
T ss_pred             ---------------CCHHHHHHHHHHhcccCc-chHH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence                           789999999999999999 5333 455666666677777799999999999988774

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.57  E-value=6.7e-14  Score=120.70  Aligned_cols=119  Identities=16%  Similarity=0.093  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159          91 SEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI  170 (259)
Q Consensus        91 ~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~  170 (259)
                      ..+..++|+..++++++++|+++.+|..+|.++...|++.          .|...++++++++|++..+|..+|.+++..
T Consensus        76 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~----------~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~  145 (296)
T PRK11189         76 SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD----------AAYEAFDSVLELDPTYNYAYLNRGIALYYG  145 (296)
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            4566789999999999999999999999999999888887          466888999999999999999999888764


Q ss_pred             hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                                          |++++|++.|+++++++| +++..... ..+....+++++|++.+.+++..
T Consensus       146 --------------------g~~~eA~~~~~~al~~~P-~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        146 --------------------GRYELAQDDLLAFYQDDP-NDPYRALW-LYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             --------------------CCHHHHHHHHHHHHHhCC-CCHHHHHH-HHHHHccCCHHHHHHHHHHHHhh
Confidence                                889999999999999999 55432111 22344567899999999777654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.55  E-value=2.7e-13  Score=103.02  Aligned_cols=117  Identities=15%  Similarity=0.093  Sum_probs=106.7

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhh
Q psy9159          52 NLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQS  131 (259)
Q Consensus        52 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~  131 (259)
                      ..+++++..+|+++.+.+.+|.++...|++.              +|+..+++++.++|+++.++..+|.++...+++. 
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~--------------~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~-   68 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYD--------------EALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE-   68 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHH--------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH-
Confidence            4678999999999999999999999999875              9999999999999999999999999999998876 


Q ss_pred             HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc
Q psy9159         132 LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW  211 (259)
Q Consensus       132 ~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~  211 (259)
                               .+...++++++++|+++..++.+|.++...                    |++++|+.+|+++++++| +.
T Consensus        69 ---------~A~~~~~~~~~~~p~~~~~~~~la~~~~~~--------------------g~~~~A~~~~~~al~~~p-~~  118 (135)
T TIGR02552        69 ---------EAIDAYALAAALDPDDPRPYFHAAECLLAL--------------------GEPESALKALDLAIEICG-EN  118 (135)
T ss_pred             ---------HHHHHHHHHHhcCCCChHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhcc-cc
Confidence                     467889999999999999999999988874                    889999999999999999 55


Q ss_pred             HH
Q psy9159         212 KE  213 (259)
Q Consensus       212 ~~  213 (259)
                      ..
T Consensus       119 ~~  120 (135)
T TIGR02552       119 PE  120 (135)
T ss_pred             ch
Confidence            44

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1174|consensus

Probab=99.54  E-value=1.1e-12  Score=113.46  Aligned_cols=184  Identities=15%  Similarity=0.057  Sum_probs=153.6

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      ++++..+..++  .. ++++.|+.+.+++|..+|.+.+++...|.++..+|+..              +|.-.|+.|..+
T Consensus       301 ~~wfV~~~~l~--~~-K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~--------------~A~IaFR~Aq~L  363 (564)
T KOG1174|consen  301 SHWFVHAQLLY--DE-KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHT--------------QAVIAFRTAQML  363 (564)
T ss_pred             hhhhhhhhhhh--hh-hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchH--------------HHHHHHHHHHhc
Confidence            46677777777  55 89999999999999999999999999999999999986              888899999999


Q ss_pred             CCCChHHHHHHHHHHHHhhchhhHHHH-----------------Hh---------cHHHHHHHHHHHHccCCCChhHHHH
Q psy9159         109 APNNSNTQKWYGICVGANGQFQSLKEK-----------------IK---------CGVVFRDQMNKAIQMAPKDFTLYSL  162 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~~~~~~~~~-----------------~~---------~~~~a~~~~~kAl~l~P~~~~~~~~  162 (259)
                      .|-.-+++..+-.++...+.+.++.--                 .+         .-++|+..++++|.++|.-..+-..
T Consensus       364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~  443 (564)
T KOG1174|consen  364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNL  443 (564)
T ss_pred             chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHH
Confidence            999888887777777666655433210                 00         0136788999999999999999999


Q ss_pred             HHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         163 KGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       163 lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                      ++.++..                    .|+++++|..+++++...| + ..-+..||.++...+.+++|.+.|.+|+.++
T Consensus       444 ~AEL~~~--------------------Eg~~~D~i~LLe~~L~~~~-D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  444 IAELCQV--------------------EGPTKDIIKLLEKHLIIFP-D-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             HHHHHHh--------------------hCccchHHHHHHHHHhhcc-c-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            9887765                    3889999999999999999 5 4568889999999999999999999999999


Q ss_pred             CCCccchhh
Q psy9159         243 VVSYESHDL  251 (259)
Q Consensus       243 p~~~~~~~~  251 (259)
                      |.+...+..
T Consensus       502 P~~~~sl~G  510 (564)
T KOG1174|consen  502 PKSKRTLRG  510 (564)
T ss_pred             ccchHHHHH
Confidence            988655443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.54  E-value=4.4e-13  Score=129.50  Aligned_cols=181  Identities=14%  Similarity=0.008  Sum_probs=142.1

Q ss_pred             HHhhcCCcCCHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHhhchhcc-----------cCc----HH---------HH
Q psy9159          37 RLLYYGKKDDKAKAYNLTMELNNKQPNDP-DVLYRLAKACHCLYDIKRR-----------END----KE---------AS   91 (259)
Q Consensus        37 ~l~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~g~~~~~-----------~~~----~~---------~~   91 (259)
                      .++  .. |++++|+..|+++++..|..| .+...+|.+|...|+..+.           +.+    ..         ..
T Consensus       246 ~Ll--~~-g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~  322 (765)
T PRK10049        246 ALL--AR-DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE  322 (765)
T ss_pred             HHH--Hh-hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence            445  45 788888888888887753322 2333357788777775531           111    00         12


Q ss_pred             HHHHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC
Q psy9159          92 EKYILQGIEYAKKAMELAPNN---------------SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD  156 (259)
Q Consensus        92 ~~~~~~A~~~~~kal~~~P~~---------------~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~  156 (259)
                      .+.+++|+..++++...+|..               ..++..++.++...|++.          .|.+.+++++...|++
T Consensus       323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~----------eA~~~l~~al~~~P~n  392 (765)
T PRK10049        323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP----------QAEMRARELAYNAPGN  392 (765)
T ss_pred             cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCC
Confidence            356789999999999998742               345667788888787776          5678899999999999


Q ss_pred             hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHH
Q psy9159         157 FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLD  236 (259)
Q Consensus       157 ~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~  236 (259)
                      +.++..+|.++...                    |++++|++.++++++++| ++...++.+|.++..+|++++|...++
T Consensus       393 ~~l~~~lA~l~~~~--------------------g~~~~A~~~l~~al~l~P-d~~~l~~~~a~~al~~~~~~~A~~~~~  451 (765)
T PRK10049        393 QGLRIDYASVLQAR--------------------GWPRAAENELKKAEVLEP-RNINLEVEQAWTALDLQEWRQMDVLTD  451 (765)
T ss_pred             HHHHHHHHHHHHhc--------------------CCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            99999999988764                    889999999999999999 788999999999999999999999999


Q ss_pred             HHhcCCCCCccchhh
Q psy9159         237 KAKAIPVVSYESHDL  251 (259)
Q Consensus       237 kal~l~p~~~~~~~~  251 (259)
                      ++++..|+++.....
T Consensus       452 ~ll~~~Pd~~~~~~~  466 (765)
T PRK10049        452 DVVAREPQDPGVQRL  466 (765)
T ss_pred             HHHHhCCCCHHHHHH
Confidence            999999999865443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.53  E-value=6.4e-13  Score=110.54  Aligned_cols=157  Identities=17%  Similarity=0.194  Sum_probs=128.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhhchhhHHHHH
Q psy9159          60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS---NTQKWYGICVGANGQFQSLKEKI  136 (259)
Q Consensus        60 ~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~---~~~~~la~~~~~~~~~~~~~~~~  136 (259)
                      .++..++.++.+|..+...|++.              +|+..+++++..+|+++   .+++.+|.++...+++.      
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~--------------~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~------   87 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYT--------------EAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYA------   87 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHH------
Confidence            45677889999999999999875              99999999999999987   57788999999888887      


Q ss_pred             hcHHHHHHHHHHHHccCCCChh---HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHH
Q psy9159         137 KCGVVFRDQMNKAIQMAPKDFT---LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKE  213 (259)
Q Consensus       137 ~~~~~a~~~~~kAl~l~P~~~~---~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~  213 (259)
                          .|...++++++.+|+++.   +++.+|.+++.....            .....|++++|++.|+++++.+| ++..
T Consensus        88 ----~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~------------~~~~~~~~~~A~~~~~~~~~~~p-~~~~  150 (235)
T TIGR03302        88 ----EAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDR------------VDRDQTAAREAFEAFQELIRRYP-NSEY  150 (235)
T ss_pred             ----HHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccc------------ccCCHHHHHHHHHHHHHHHHHCC-CChh
Confidence                567899999999999987   689999988764110            00113679999999999999999 5543


Q ss_pred             hH-----------------HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhh
Q psy9159         214 NQ-----------------LLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLST  253 (259)
Q Consensus       214 ~~-----------------~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~  253 (259)
                      ++                 ..+|.+|...|++++|+..++++++..|.++.....+.
T Consensus       151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~  207 (235)
T TIGR03302       151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALA  207 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHH
Confidence            32                 46789999999999999999999999998876555444

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0553|consensus

Probab=99.53  E-value=5.8e-14  Score=116.98  Aligned_cols=115  Identities=17%  Similarity=0.197  Sum_probs=104.5

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      +.+-.+++.+.  .. ++|++|++.|.++|+.+|.|+-.|.+.|.+|.++|.+.              .|+.-|+.||.+
T Consensus        82 E~LK~eGN~~m--~~-~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~--------------~AVkDce~Al~i  144 (304)
T KOG0553|consen   82 ESLKNEGNKLM--KN-KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYE--------------DAVKDCESALSI  144 (304)
T ss_pred             HHHHHHHHHHH--Hh-hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchH--------------HHHHHHHHHHhc
Confidence            45566777887  66 99999999999999999999999999999999999875              999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159         109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI  170 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~  170 (259)
                      ||..+.+|-.+|.++..+|++.          .|.+.|+|||+++|+|..++..|...-..+
T Consensus       145 Dp~yskay~RLG~A~~~~gk~~----------~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l  196 (304)
T KOG0553|consen  145 DPHYSKAYGRLGLAYLALGKYE----------EAIEAYKKALELDPDNESYKSNLKIAEQKL  196 (304)
T ss_pred             ChHHHHHHHHHHHHHHccCcHH----------HHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence            9999999999999999999987          467889999999999999999998766554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.52  E-value=1.2e-12  Score=107.34  Aligned_cols=160  Identities=19%  Similarity=0.146  Sum_probs=102.3

Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------cCcHH---------HHHHHHHHHHHHHHHH
Q psy9159          46 DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------ENDKE---------ASEKYILQGIEYAKKA  105 (259)
Q Consensus        46 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~~~~~---------~~~~~~~~A~~~~~ka  105 (259)
                      +-..+...+-.....+|++.++ .+++..+...|+-...           +.+.+         -+.+++.+|+..++++
T Consensus        48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA  126 (257)
T COG5010          48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA  126 (257)
T ss_pred             hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            4444666666666777877777 7777777777654310           01100         1233455777777777


Q ss_pred             HHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHh
Q psy9159         106 MELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIV  185 (259)
Q Consensus       106 l~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~  185 (259)
                      ..++|+|+++|..+|.++-+.|++.          .+...|.+|+++.|+++.+..++|.++.-.               
T Consensus       127 ~~l~p~d~~~~~~lgaaldq~Gr~~----------~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~---------------  181 (257)
T COG5010         127 ARLAPTDWEAWNLLGAALDQLGRFD----------EARRAYRQALELAPNEPSIANNLGMSLLLR---------------  181 (257)
T ss_pred             hccCCCChhhhhHHHHHHHHccChh----------HHHHHHHHHHHhccCCchhhhhHHHHHHHc---------------
Confidence            7777777777777777777777666          345666777777777777777777665432               


Q ss_pred             cCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHH
Q psy9159         186 SDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDK  237 (259)
Q Consensus       186 ~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~k  237 (259)
                           |++++|...+.++....| .++.+.-+|+.+....|++.+|...-.+
T Consensus       182 -----gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         182 -----GDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             -----CCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhccc
Confidence                 667777777777766655 4566667777777777777776655443

>KOG2002|consensus

Probab=99.52  E-value=4.4e-13  Score=125.76  Aligned_cols=199  Identities=12%  Similarity=0.030  Sum_probs=145.0

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND-PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      .++-+|-..|  +. |+|..|+.+|.+++..+|.. +++...+|.+...+|+.              +.|+..+++++++
T Consensus       166 ~LlGkA~i~y--nk-kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~--------------~~a~~a~~ralqL  228 (1018)
T KOG2002|consen  166 ALLGKARIAY--NK-KDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMS--------------EKALLAFERALQL  228 (1018)
T ss_pred             HHHHHHHHHh--cc-ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccch--------------hhHHHHHHHHHhc
Confidence            4455555555  44 67777777777766666643 33334445555555554              4999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchH----HHHHHHH-
Q psy9159         109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFF----ERKIAVL-  183 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~----~~~~~~~-  183 (259)
                      ||+++.+...||.+.....+..+       ...+...+.+|...+|.||.++..|+.-++..++++-.    ..++... 
T Consensus       229 dp~~v~alv~L~~~~l~~~d~~s-------~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~  301 (1018)
T KOG2002|consen  229 DPTCVSALVALGEVDLNFNDSDS-------YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE  301 (1018)
T ss_pred             ChhhHHHHHHHHHHHHHccchHH-------HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence            99999998888877655544432       22567888999999999999999999887777765311    1111110 


Q ss_pred             --------Hh--cC--CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159         184 --------IV--SD--LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL  251 (259)
Q Consensus       184 --------~~--~~--~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~  251 (259)
                              +|  |.  -.+|+|++|..+|.++++.+|++..-.++-||..|+..|++++|+.+|++++...|++.++-.+
T Consensus       302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i  381 (1018)
T KOG2002|consen  302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI  381 (1018)
T ss_pred             hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence                    11  00  1269999999999999999995547789999999999999999999999999999999987655


Q ss_pred             h
Q psy9159         252 S  252 (259)
Q Consensus       252 ~  252 (259)
                      +
T Consensus       382 L  382 (1018)
T KOG2002|consen  382 L  382 (1018)
T ss_pred             H
Confidence            4

>KOG0553|consensus

Probab=99.52  E-value=1.2e-13  Score=115.20  Aligned_cols=91  Identities=19%  Similarity=0.285  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHH
Q psy9159         140 VVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIA  219 (259)
Q Consensus       140 ~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la  219 (259)
                      ..|...|.+||+++|+|+.+|-+++.+|.++                    |.++.|++..+.||.+|| ++..+|..||
T Consensus        98 ~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L--------------------g~~~~AVkDce~Al~iDp-~yskay~RLG  156 (304)
T KOG0553|consen   98 QEAVDKYTEAIELDPTNAVYYCNRAAAYSKL--------------------GEYEDAVKDCESALSIDP-HYSKAYGRLG  156 (304)
T ss_pred             HHHHHHHHHHHhcCCCcchHHHHHHHHHHHh--------------------cchHHHHHHHHHHHhcCh-HHHHHHHHHH
Confidence            3678899999999999999999999999886                    779999999999999999 8899999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159         220 KCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL  251 (259)
Q Consensus       220 ~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~  251 (259)
                      .+|..+|++++|++.|+||++++|+|..-|..
T Consensus       157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~n  188 (304)
T KOG0553|consen  157 LAYLALGKYEEAIEAYKKALELDPDNESYKSN  188 (304)
T ss_pred             HHHHccCcHHHHHHHHHhhhccCCCcHHHHHH
Confidence            99999999999999999999999999865543

>KOG0550|consensus

Probab=99.52  E-value=5.1e-14  Score=121.46  Aligned_cols=84  Identities=14%  Similarity=0.080  Sum_probs=66.0

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      .++...+  .. .+|.+|+..+..+|+..|+++..|.+.+.+++..|++.              +|+.-+++.+.++|..
T Consensus        54 ~~gn~~y--k~-k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~--------------~a~~dar~~~r~kd~~  116 (486)
T KOG0550|consen   54 EEGNAFY--KQ-KTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFE--------------EALGDARQSVRLKDGF  116 (486)
T ss_pred             hhcchHH--HH-hhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHh--------------hcccchhhheecCCCc
Confidence            3444444  34 78999999999999999999999999999999999876              7777777777777777


Q ss_pred             hHHHHHHHHHHHHhhchhhHH
Q psy9159         113 SNTQKWYGICVGANGQFQSLK  133 (259)
Q Consensus       113 ~~~~~~la~~~~~~~~~~~~~  133 (259)
                      +.++...+.+...+++..++.
T Consensus       117 ~k~~~r~~~c~~a~~~~i~A~  137 (486)
T KOG0550|consen  117 SKGQLREGQCHLALSDLIEAE  137 (486)
T ss_pred             cccccchhhhhhhhHHHHHHH
Confidence            777777777776666554443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.49  E-value=4.7e-13  Score=102.82  Aligned_cols=116  Identities=15%  Similarity=0.072  Sum_probs=102.6

Q ss_pred             HHHhC-CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHH
Q psy9159         105 AMELA-PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVL  183 (259)
Q Consensus       105 al~~~-P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~  183 (259)
                      ...+. |+.-+..+.+|..+...|++.          .|...|+-+..+||.++..|+.||.++-.+             
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~----------~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~-------------   82 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFA----------GAARLFQLLTIYDAWSFDYWFRLGECCQAQ-------------   82 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHH-------------
Confidence            44667 777788889999999999887          467888999999999999999999988765             


Q ss_pred             HhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159         184 IVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL  251 (259)
Q Consensus       184 ~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~  251 (259)
                             |+|++||.+|.+|+.++| +++..++++|.|+...|+.++|.+.|+.|+..-..++++..+
T Consensus        83 -------g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l  142 (157)
T PRK15363         83 -------KHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQIL  142 (157)
T ss_pred             -------hhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHH
Confidence                   789999999999999999 789999999999999999999999999999988666665544

>KOG1129|consensus

Probab=99.49  E-value=1.3e-12  Score=110.03  Aligned_cols=180  Identities=15%  Similarity=0.055  Sum_probs=133.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      .+...|+..+.+.+...|.++..+..+|+++..++              .+++|+++|+.+++++|.|.++..-.|.-+.
T Consensus       270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~--------------~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf  335 (478)
T KOG1129|consen  270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME--------------QQEDALQLYKLVLKLHPINVEAIACIAVGYF  335 (478)
T ss_pred             ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH--------------hHHHHHHHHHHHHhcCCccceeeeeeeeccc
Confidence            34444444444444444444444444444444444              4569999999999999999998655555554


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc----hHHHHHHHHH---------hcC----
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS----FFERKIAVLI---------VSD----  187 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~----~~~~~~~~~~---------~~~----  187 (259)
                      .-++.+          .+..+|++.|++--.+++.+.++|.+|+-.+.++    .+.|++..+.         ++.    
T Consensus       336 Y~~~PE----------~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va  405 (478)
T KOG1129|consen  336 YDNNPE----------MALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA  405 (478)
T ss_pred             cCCChH----------HHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE
Confidence            444444          5789999999999999999999999988776554    4555554221         110    


Q ss_pred             CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159         188 LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       188 ~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~  249 (259)
                      -..|++.-|-.||+-|+..|| ++.+++.+||..-+..|+.++|..++..|....|+-.|..
T Consensus       406 V~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~  466 (478)
T KOG1129|consen  406 VTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVT  466 (478)
T ss_pred             EeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccc
Confidence            126999999999999999999 7899999999999999999999999999999998877543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.48  E-value=2.6e-12  Score=113.17  Aligned_cols=169  Identities=17%  Similarity=0.057  Sum_probs=133.5

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      ..++..++  .. |++++|++.+++++..+|+++.++.. +..+...|....          ....+...+......+|+
T Consensus        47 ~~~a~~~~--~~-g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~  112 (355)
T cd05804          47 HVEALSAW--IA-GDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSG----------MRDHVARVLPLWAPENPD  112 (355)
T ss_pred             HHHHHHHH--Hc-CCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhccccc----------CchhHHHHHhccCcCCCC
Confidence            33444555  46 99999999999999999999988776 667777765431          112333334444466777


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCC
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEP  191 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g  191 (259)
                      ...++..+|.++...|++.          .+...++++++++|+++.+++.+|.++++.                    |
T Consensus       113 ~~~~~~~~a~~~~~~G~~~----------~A~~~~~~al~~~p~~~~~~~~la~i~~~~--------------------g  162 (355)
T cd05804         113 YWYLLGMLAFGLEEAGQYD----------RAEEAARRALELNPDDAWAVHAVAHVLEMQ--------------------G  162 (355)
T ss_pred             cHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhhCCCCcHHHHHHHHHHHHc--------------------C
Confidence            7777777888888888876          567899999999999999999999999875                    8


Q ss_pred             cHHHHHHHHHHHHhhCCCCc---HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         192 TAEDAIANCLKAEELAPAPW---KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       192 ~~~eAi~~~~kAi~l~P~~~---~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      ++++|+.++++++...|.+.   ...+..+|.++...|++++|+..+++++...|.
T Consensus       163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~  218 (355)
T cd05804         163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE  218 (355)
T ss_pred             CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence            89999999999999986221   234678999999999999999999999877763

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.48  E-value=1.1e-11  Score=111.27  Aligned_cols=183  Identities=14%  Similarity=0.045  Sum_probs=139.4

Q ss_pred             HHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------cCcHHHHH--------HHH
Q psy9159          35 IDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------ENDKEASE--------KYI   95 (259)
Q Consensus        35 ~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~~~~~~~~--------~~~   95 (259)
                      +....  .. |++++|+..+++..+.+|+++.++..++.+|...|++.+.           ..++++..        ...
T Consensus       160 a~l~l--~~-g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~  236 (398)
T PRK10747        160 VRIQL--AR-NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM  236 (398)
T ss_pred             HHHHH--HC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            44444  56 9999999999999999999999999999999999987631           01111111        001


Q ss_pred             -----HHHHHHHHHHH----HhCCCChHHHHHHHHHHHHhhchhhHHHHHh---------------------cHHHHHHH
Q psy9159          96 -----LQGIEYAKKAM----ELAPNNSNTQKWYGICVGANGQFQSLKEKIK---------------------CGVVFRDQ  145 (259)
Q Consensus        96 -----~~A~~~~~kal----~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~---------------------~~~~a~~~  145 (259)
                           ..+.+.+.+.+    ...|+++.++..++..+...|+...+...+.                     +..++.+.
T Consensus       237 ~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~  316 (398)
T PRK10747        237 DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKV  316 (398)
T ss_pred             HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHH
Confidence                 11122333333    3446688899999999988888776543322                     12345677


Q ss_pred             HHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHh
Q psy9159         146 MNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEA  225 (259)
Q Consensus       146 ~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~  225 (259)
                      +++.++.+|+|+..+..+|+++...                    +++++|.++|++++++.| + ...+..++.++..+
T Consensus       317 ~e~~lk~~P~~~~l~l~lgrl~~~~--------------------~~~~~A~~~le~al~~~P-~-~~~~~~La~~~~~~  374 (398)
T PRK10747        317 LRQQIKQHGDTPLLWSTLGQLLMKH--------------------GEWQEASLAFRAALKQRP-D-AYDYAWLADALDRL  374 (398)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHhcCC-C-HHHHHHHHHHHHHc
Confidence            8888999999999999999998874                    889999999999999999 5 46678999999999


Q ss_pred             CCHHHHHHHHHHHhcCC
Q psy9159         226 GEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       226 g~~~eA~~~~~kal~l~  242 (259)
                      |+.++|.++|++++.+-
T Consensus       375 g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        375 HKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             CCHHHHHHHHHHHHhhh
Confidence            99999999999998864

>KOG2003|consensus

Probab=99.47  E-value=2e-12  Score=113.10  Aligned_cols=181  Identities=17%  Similarity=0.161  Sum_probs=147.8

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      ..+++..|  .+ |++++|.+.|++++.-+....++++++|..+-.+|+.+              +|++.|-+.-.+--+
T Consensus       494 ~nkgn~~f--~n-gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ld--------------eald~f~klh~il~n  556 (840)
T KOG2003|consen  494 TNKGNIAF--AN-GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLD--------------EALDCFLKLHAILLN  556 (840)
T ss_pred             hcCCceee--ec-CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHH--------------HHHHHHHHHHHHHHh
Confidence            34455556  56 99999999999999999999999999999999998865              899999888888888


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc-----------------
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS-----------------  174 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~-----------------  174 (259)
                      +++++..++.++..+.+..          .+++.+-.+..+-|++|.++..||.+|-+.|+.+                 
T Consensus       557 n~evl~qianiye~led~a----------qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ni  626 (840)
T KOG2003|consen  557 NAEVLVQIANIYELLEDPA----------QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNI  626 (840)
T ss_pred             hHHHHHHHHHHHHHhhCHH----------HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcch
Confidence            8888888888887666554          4678888888999999999999998876655421                 


Q ss_pred             ----hHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         175 ----FFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       175 ----~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                          |+.....       .+.=.++||.+|++|--+.| ....+.+.++.|+...|+|++|.+.|+.....-|.+.+
T Consensus       627 e~iewl~ayyi-------dtqf~ekai~y~ekaaliqp-~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld  695 (840)
T KOG2003|consen  627 ETIEWLAAYYI-------DTQFSEKAINYFEKAALIQP-NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD  695 (840)
T ss_pred             HHHHHHHHHHH-------hhHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH
Confidence                2211111       12336999999999999999 66888999999999999999999999999998887764

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.47  E-value=5.3e-12  Score=103.48  Aligned_cols=121  Identities=20%  Similarity=0.167  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc
Q psy9159          95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS  174 (259)
Q Consensus        95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~  174 (259)
                      -+.++.+..+++.-.|.+...+.-+|..+...|++.          .+...+.++..++|+|+.+|..+|.+|-+.    
T Consensus        82 a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~----------~A~~~~rkA~~l~p~d~~~~~~lgaaldq~----  147 (257)
T COG5010          82 ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFG----------EAVSVLRKAARLAPTDWEAWNLLGAALDQL----  147 (257)
T ss_pred             ccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchH----------HHHHHHHHHhccCCCChhhhhHHHHHHHHc----
Confidence            456777788888888999888878899999999887          467899999999999999999999999875    


Q ss_pred             hHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         175 FFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                                      |++++|...|.+|+++.| ..+.+..|||..|...|+++.|..++.++....+.+.
T Consensus       148 ----------------Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~  202 (257)
T COG5010         148 ----------------GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS  202 (257)
T ss_pred             ----------------cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch
Confidence                            889999999999999999 6788999999999999999999999999998886443

>KOG0550|consensus

Probab=99.47  E-value=5.9e-13  Score=114.98  Aligned_cols=173  Identities=14%  Similarity=0.147  Sum_probs=136.5

Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy9159          44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV  123 (259)
Q Consensus        44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~  123 (259)
                      .|++.+|.+..-.+++.++.+.++++..|.+++..++..              .|...++++|.++|++...-...-.+-
T Consensus       182 ~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~--------------ka~~hf~qal~ldpdh~~sk~~~~~~k  247 (486)
T KOG0550|consen  182 LGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNAD--------------KAINHFQQALRLDPDHQKSKSASMMPK  247 (486)
T ss_pred             cccchhHHHHHHHHHhcccchhHHHHhcccccccccchH--------------HHHHHHhhhhccChhhhhHHhHhhhHH
Confidence            499999999999999999999999999999999888765              999999999999999877643322211


Q ss_pred             HHhhchhhHHH--HHhcHHHHHHHHHHHHccCCCChhH----HHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHH
Q psy9159         124 GANGQFQSLKE--KIKCGVVFRDQMNKAIQMAPKDFTL----YSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAI  197 (259)
Q Consensus       124 ~~~~~~~~~~~--~~~~~~~a~~~~~kAl~l~P~~~~~----~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi  197 (259)
                      .....-....+  +-+...++.+.|.+||.+||+|...    |.+++.+..+                    .|+.++||
T Consensus       248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r--------------------Lgrl~eai  307 (486)
T KOG0550|consen  248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR--------------------LGRLREAI  307 (486)
T ss_pred             HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc--------------------cCCchhhh
Confidence            11111111111  1233457789999999999997643    4444444443                    38899999


Q ss_pred             HHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         198 ANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       198 ~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                      .-...|+++|| ..+.+++..|.|+..++++++|++.|++|.++..+ ++.++.+
T Consensus       308 sdc~~Al~iD~-syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l  360 (486)
T KOG0550|consen  308 SDCNEALKIDS-SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTL  360 (486)
T ss_pred             hhhhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHH
Confidence            99999999999 88999999999999999999999999999999877 7766654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.46  E-value=8e-12  Score=114.94  Aligned_cols=162  Identities=15%  Similarity=0.097  Sum_probs=121.5

Q ss_pred             hcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhc
Q psy9159          59 NKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKC  138 (259)
Q Consensus        59 ~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~  138 (259)
                      ..-|.++++|-..-+....+.+.         ..+.+..|++.+++|++++|+++.+|..++.++.....+....+  ..
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~---------~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~--~~  399 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSG---------DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDE--KQ  399 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccH--HH
Confidence            45578877764443333322221         12346699999999999999999999998887765544332100  11


Q ss_pred             HHHHHHHHHHHHcc--CCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHH
Q psy9159         139 GVVFRDQMNKAIQM--APKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQL  216 (259)
Q Consensus       139 ~~~a~~~~~kAl~l--~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~  216 (259)
                      ...+.+..++++.+  +|.++.+|..+|..+..                    .|++++|..++++|++++| + ..+|.
T Consensus       400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~--------------------~g~~~~A~~~l~rAl~L~p-s-~~a~~  457 (517)
T PRK10153        400 LAALSTELDNIVALPELNVLPRIYEILAVQALV--------------------KGKTDEAYQAINKAIDLEM-S-WLNYV  457 (517)
T ss_pred             HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHHcCC-C-HHHHH
Confidence            12345666777764  88888899999887654                    3889999999999999999 5 67999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhh
Q psy9159         217 LIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLST  253 (259)
Q Consensus       217 ~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~  253 (259)
                      .+|.++...|+.++|++.|++|+.++|.++.--.+.|
T Consensus       458 ~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~  494 (517)
T PRK10153        458 LLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIEN  494 (517)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHh
Confidence            9999999999999999999999999999886544444

>PRK11906 transcriptional regulator; Provisional

Probab=99.45  E-value=3.3e-12  Score=113.02  Aligned_cols=131  Identities=8%  Similarity=-0.034  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159          94 YILQGIEYAKKAM---ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI  170 (259)
Q Consensus        94 ~~~~A~~~~~kal---~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~  170 (259)
                      ..+.|+..+.+|+   +++|+.+.++.++++++....- .+..+.......+.+..++|+++||+|+.++..+|.+....
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~-~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL-HGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence            4569999999999   9999999999999999875421 11111222333577899999999999999999999966543


Q ss_pred             hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                                          ++++.|+..|++|+.++| +.+.+|+..|.+....|+.++|++..+++++++|.-.
T Consensus       352 --------------------~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        352 --------------------GQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             --------------------cchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence                                679999999999999999 7899999999999999999999999999999999744

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=6.3e-12  Score=105.35  Aligned_cols=126  Identities=17%  Similarity=0.102  Sum_probs=112.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      .+.++.+..++.-+..+|+|++-|..||.+|...|+..              .|...|.+|+.+.|+|++.+..+|.++.
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~--------------~A~~AY~~A~rL~g~n~~~~~g~aeaL~  201 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRAS--------------DALLAYRNALRLAGDNPEILLGLAEALY  201 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchh--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999875              9999999999999999999999999887


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE  204 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi  204 (259)
                      ...+..-       ..++...+++++.+||+|..+.+.||.-+++.                    |+|.+|+..++..+
T Consensus       202 ~~a~~~~-------ta~a~~ll~~al~~D~~~iral~lLA~~afe~--------------------g~~~~A~~~Wq~lL  254 (287)
T COG4235         202 YQAGQQM-------TAKARALLRQALALDPANIRALSLLAFAAFEQ--------------------GDYAEAAAAWQMLL  254 (287)
T ss_pred             HhcCCcc-------cHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc--------------------ccHHHHHHHHHHHH
Confidence            6654321       11567899999999999999999999988884                    88999999999999


Q ss_pred             hhCCCCc
Q psy9159         205 ELAPAPW  211 (259)
Q Consensus       205 ~l~P~~~  211 (259)
                      ++.|.+.
T Consensus       255 ~~lp~~~  261 (287)
T COG4235         255 DLLPADD  261 (287)
T ss_pred             hcCCCCC
Confidence            9998443

>PRK11906 transcriptional regulator; Provisional

Probab=99.44  E-value=8.3e-12  Score=110.49  Aligned_cols=164  Identities=13%  Similarity=0.095  Sum_probs=130.7

Q ss_pred             CcCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Q psy9159          43 KKDDKAKAYNLTMELN---NKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWY  119 (259)
Q Consensus        43 ~~~~~~~A~~~~~~~~---~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~l  119 (259)
                      +....+.|+.+|.+++   ..+|+.+.++..+|.++....-...    . +......+|.+..++|++++|+|+.++..+
T Consensus       270 t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~----~-~~~~~~~~a~~~A~rAveld~~Da~a~~~~  344 (458)
T PRK11906        270 TPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGK----S-ELELAAQKALELLDYVSDITTVDGKILAIM  344 (458)
T ss_pred             CHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcC----C-CchHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            3356789999999999   9999999999999999987632211    0 134456799999999999999999999999


Q ss_pred             HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHH
Q psy9159         120 GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIAN  199 (259)
Q Consensus       120 a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~  199 (259)
                      |.+++..+++.          .+...+++|+.++|+.+.+|+..|.+++-.                    |+.++|+++
T Consensus       345 g~~~~~~~~~~----------~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~--------------------G~~~~a~~~  394 (458)
T PRK11906        345 GLITGLSGQAK----------VSHILFEQAKIHSTDIASLYYYRALVHFHN--------------------EKIEEARIC  394 (458)
T ss_pred             HHHHHhhcchh----------hHHHHHHHHhhcCCccHHHHHHHHHHHHHc--------------------CCHHHHHHH
Confidence            99999988866          467899999999999999999999877654                    889999999


Q ss_pred             HHHHHhhCCCCcHH-hHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         200 CLKAEELAPAPWKE-NQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       200 ~~kAi~l~P~~~~~-~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                      +++|++++| .-.. ....+-.-..-....++|+..|-|-.+..
T Consensus       395 i~~alrLsP-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (458)
T PRK11906        395 IDKSLQLEP-RRRKAVVIKECVDMYVPNPLKNNIKLYYKETESE  437 (458)
T ss_pred             HHHHhccCc-hhhHHHHHHHHHHHHcCCchhhhHHHHhhccccc
Confidence            999999999 4332 23333331234456889999887765543

>KOG3060|consensus

Probab=99.43  E-value=2.2e-11  Score=99.35  Aligned_cols=156  Identities=15%  Similarity=0.060  Sum_probs=126.5

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      |+..-|...+.+.....|+++-+...-|..+-..|++.              +|+++|+..|+-||+|..++...-.++-
T Consensus        66 ~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~--------------~A~e~y~~lL~ddpt~~v~~KRKlAilk  131 (289)
T KOG3060|consen   66 GRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK--------------EAIEYYESLLEDDPTDTVIRKRKLAILK  131 (289)
T ss_pred             cchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh--------------hHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence            88888888888888888998888777777777777664              9999999999999999888876544444


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE  204 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi  204 (259)
                      ..|.-.          .+++.+.+-++.+|+|+++|..++.+|+..                    |.|++|.-|+++.+
T Consensus       132 a~GK~l----------~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~--------------------~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  132 AQGKNL----------EAIKELNEYLDKFMNDQEAWHELAEIYLSE--------------------GDFEKAAFCLEELL  181 (289)
T ss_pred             HcCCcH----------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhH--------------------hHHHHHHHHHHHHH
Confidence            455433          356667777888999999999999999886                    66899999999999


Q ss_pred             hhCCCCcHHhHHHHHHHHHHhC---CHHHHHHHHHHHhcCCCCC
Q psy9159         205 ELAPAPWKENQLLIAKCYIEAG---EYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       205 ~l~P~~~~~~~~~la~~~~~~g---~~~eA~~~~~kal~l~p~~  245 (259)
                      =+.| +++..+..+|.++..+|   +++-|.++|.++++++|.+
T Consensus       182 l~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~  224 (289)
T KOG3060|consen  182 LIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN  224 (289)
T ss_pred             HcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence            9999 88888888898888876   5677899999999998744

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.42  E-value=3.1e-12  Score=113.03  Aligned_cols=113  Identities=21%  Similarity=0.222  Sum_probs=104.5

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP  110 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P  110 (259)
                      +..++..++  .. |+|++|++.|++++..+|+++.+++.+|.+|..+|++.              +|+..+++++.++|
T Consensus         5 l~~~a~~a~--~~-~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~--------------eAl~~~~~Al~l~P   67 (356)
T PLN03088          5 LEDKAKEAF--VD-DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFT--------------EAVADANKAIELDP   67 (356)
T ss_pred             HHHHHHHHH--Hc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCc
Confidence            567788898  67 99999999999999999999999999999999999875              99999999999999


Q ss_pred             CChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159         111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI  170 (259)
Q Consensus       111 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~  170 (259)
                      +++.+++++|.++..+|++.          .|+..++++++++|+++.+...++.+...+
T Consensus        68 ~~~~a~~~lg~~~~~lg~~~----------eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         68 SLAKAYLRKGTACMKLEEYQ----------TAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999987          567899999999999999999999876544

>KOG2002|consensus

Probab=99.41  E-value=1.2e-11  Score=116.30  Aligned_cols=179  Identities=16%  Similarity=0.125  Sum_probs=148.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc----------------------------------cCcHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR----------------------------------ENDKEA   90 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~----------------------------------~~~~~~   90 (259)
                      ++..+|...++.++..+..+|+++-.+|..+.....+...                                  .-+...
T Consensus       544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek  623 (1018)
T KOG2002|consen  544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK  623 (1018)
T ss_pred             cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence            8899999999999999999999999999777654432210                                  011234


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159          91 SEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI  170 (259)
Q Consensus        91 ~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~  170 (259)
                      ....+++|+..|.++|..+|.|..+-..+|.++...|++..          |...|.+..+---+++.+|.++|.||+.+
T Consensus       624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~----------A~dIFsqVrEa~~~~~dv~lNlah~~~e~  693 (1018)
T KOG2002|consen  624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSE----------ARDIFSQVREATSDFEDVWLNLAHCYVEQ  693 (1018)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchH----------HHHHHHHHHHHHhhCCceeeeHHHHHHHH
Confidence            56678999999999999999999999999999999999984          45666665555557899999999999986


Q ss_pred             hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC-CCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159         171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA-PAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~-P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~  249 (259)
                                          |+|..||+.|+.+++.. |++.+.+...||.++...|++.+|.+++.+|+.+.|.++   
T Consensus       694 --------------------~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~---  750 (1018)
T KOG2002|consen  694 --------------------GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT---  750 (1018)
T ss_pred             --------------------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc---
Confidence                                78999999999999863 556788999999999999999999999999999998887   


Q ss_pred             hhhhhhc
Q psy9159         250 DLSTTYS  256 (259)
Q Consensus       250 ~~~~~~~  256 (259)
                      .+.+|++
T Consensus       751 ~v~FN~a  757 (1018)
T KOG2002|consen  751 SVKFNLA  757 (1018)
T ss_pred             hHHhHHH
Confidence            4666654

>TIGR00540 hemY_coli hemY protein

Probab=99.40  E-value=8.9e-11  Score=105.76  Aligned_cols=181  Identities=15%  Similarity=0.040  Sum_probs=137.1

Q ss_pred             HHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------cCcHH--------HHHHHH
Q psy9159          35 IDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------ENDKE--------ASEKYI   95 (259)
Q Consensus        35 ~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~~~~~--------~~~~~~   95 (259)
                      +...+  .. |++++|...+++..+..|+++.++..++.++...|++...           ..+..        ...+.+
T Consensus       160 a~l~l--~~-~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l  236 (409)
T TIGR00540       160 TRILL--AQ-NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL  236 (409)
T ss_pred             HHHHH--HC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            44444  56 9999999999999999999999999999999999987631           01111        111223


Q ss_pred             -----HHHHHHHHHHHHhCC----CChHHHHHHHHHHHHhhchhhHHHHHhc--------------------------HH
Q psy9159          96 -----LQGIEYAKKAMELAP----NNSNTQKWYGICVGANGQFQSLKEKIKC--------------------------GV  140 (259)
Q Consensus        96 -----~~A~~~~~kal~~~P----~~~~~~~~la~~~~~~~~~~~~~~~~~~--------------------------~~  140 (259)
                           +++.+.+.++++..|    +++..+..++..+...|++..+.+.+..                          ..
T Consensus       237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~  316 (409)
T TIGR00540       237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE  316 (409)
T ss_pred             HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence                 233447788888888    5888888888888888877654432211                          12


Q ss_pred             HHHHHHHHHHccCCCCh--hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH--HHHhhCCCCcHHhHH
Q psy9159         141 VFRDQMNKAIQMAPKDF--TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL--KAEELAPAPWKENQL  216 (259)
Q Consensus       141 ~a~~~~~kAl~l~P~~~--~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~--kAi~l~P~~~~~~~~  216 (259)
                      .+.+.++++++.+|+++  .....+|++++..                    |++++|.++|+  ++++..| + ...+.
T Consensus       317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~--------------------~~~~~A~~~le~a~a~~~~p-~-~~~~~  374 (409)
T TIGR00540       317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKH--------------------GEFIEAADAFKNVAACKEQL-D-ANDLA  374 (409)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc--------------------ccHHHHHHHHHHhHHhhcCC-C-HHHHH
Confidence            34567788888888888  7888888888774                    88999999999  5777888 5 44567


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         217 LIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       217 ~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                      .+|.++..+|+.++|.+++++++.
T Consensus       375 ~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       375 MAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999865

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.39  E-value=8.6e-11  Score=105.47  Aligned_cols=211  Identities=15%  Similarity=0.093  Sum_probs=148.4

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHH-HHHHHHhhchhcc-----------cCcH----------H
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRL-AKACHCLYDIKRR-----------ENDK----------E   89 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l-a~~~~~~g~~~~~-----------~~~~----------~   89 (259)
                      +.++-..+  .. |++++|...+.+.-+. +++|.+++.+ +.+....|++...           +...          .
T Consensus        88 ~~~gl~a~--~e-Gd~~~A~k~l~~~~~~-~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~  163 (398)
T PRK10747         88 TEQALLKL--AE-GDYQQVEKLMTRNADH-AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ  163 (398)
T ss_pred             HHHHHHHH--hC-CCHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            45555555  45 8888888776665443 3345666555 4444666665421           0110          0


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHH---------------H------------
Q psy9159          90 ASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVV---------------F------------  142 (259)
Q Consensus        90 ~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~---------------a------------  142 (259)
                      ...+.+++|+..+++.++.+|+++.++..++.++...|++..+..-+....+               +            
T Consensus       164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~  243 (398)
T PRK10747        164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ  243 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1234578999999999999999999999999999999988776522111110               0            


Q ss_pred             -HHHHHHHH----ccCCCChhHHHHHHHHHHHhhccchHHHHHHH-----------HHhcCCCCCcHHHHHHHHHHHHhh
Q psy9159         143 -RDQMNKAI----QMAPKDFTLYSLKGRYQYEISKLSFFERKIAV-----------LIVSDLDEPTAEDAIANCLKAEEL  206 (259)
Q Consensus       143 -~~~~~kAl----~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~-----------~~~~~~~~g~~~eAi~~~~kAi~l  206 (259)
                       .+.+.+..    +..|+++.++..+++.+...++.+...+.+..           .+++....++.+++++..++.++.
T Consensus       244 ~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~  323 (398)
T PRK10747        244 GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ  323 (398)
T ss_pred             CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh
Confidence             01122222    24567899999999999888876554444432           233334469999999999999999


Q ss_pred             CCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         207 APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       207 ~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      .| +++..++.+|.++...|++++|.+.|+++++..|++..
T Consensus       324 ~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~  363 (398)
T PRK10747        324 HG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD  363 (398)
T ss_pred             CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence            99 78899999999999999999999999999999988654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.38  E-value=1.5e-11  Score=116.50  Aligned_cols=127  Identities=6%  Similarity=-0.061  Sum_probs=117.3

Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy9159          44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV  123 (259)
Q Consensus        44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~  123 (259)
                      .|.+++|...++.+++..|++..++..++.++.+.++++              +|+..+++++..+|+++.++..+|.++
T Consensus        99 ~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~e--------------eA~~~~~~~l~~~p~~~~~~~~~a~~l  164 (694)
T PRK15179         99 AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIE--------------AGRAEIELYFSGGSSSAREILLEAKSW  164 (694)
T ss_pred             cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHH--------------HHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            499999999999999999999999999999999998865              999999999999999999999999999


Q ss_pred             HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159         124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA  203 (259)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA  203 (259)
                      ..+|+++          +|...|++++..+|+++.++..+|..+...                    |+.++|...|++|
T Consensus       165 ~~~g~~~----------~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~--------------------G~~~~A~~~~~~a  214 (694)
T PRK15179        165 DEIGQSE----------QADACFERLSRQHPEFENGYVGWAQSLTRR--------------------GALWRARDVLQAG  214 (694)
T ss_pred             HHhcchH----------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHH
Confidence            9999988          578999999999999999999999988774                    8899999999999


Q ss_pred             HhhCCCCcHHhH
Q psy9159         204 EELAPAPWKENQ  215 (259)
Q Consensus       204 i~l~P~~~~~~~  215 (259)
                      ++... +-...+
T Consensus       215 ~~~~~-~~~~~~  225 (694)
T PRK15179        215 LDAIG-DGARKL  225 (694)
T ss_pred             HHhhC-cchHHH
Confidence            99986 344443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.38  E-value=1.3e-11  Score=109.06  Aligned_cols=115  Identities=25%  Similarity=0.218  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHH
Q psy9159          68 LYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMN  147 (259)
Q Consensus        68 ~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~  147 (259)
                      +...|..++..|++              ++|++.|+++|+++|+++.++..+|.++..+|++.          .|...++
T Consensus         5 l~~~a~~a~~~~~~--------------~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~----------eAl~~~~   60 (356)
T PLN03088          5 LEDKAKEAFVDDDF--------------ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFT----------EAVADAN   60 (356)
T ss_pred             HHHHHHHHHHcCCH--------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHH
Confidence            34456666666665              49999999999999999999999999999999887          5678999


Q ss_pred             HHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCC
Q psy9159         148 KAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGE  227 (259)
Q Consensus       148 kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~  227 (259)
                      +|++++|+++.+|+.+|.+++.+                    |++++|+.+|+++++++| ++..+...++.|...+..
T Consensus        61 ~Al~l~P~~~~a~~~lg~~~~~l--------------------g~~~eA~~~~~~al~l~P-~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         61 KAIELDPSLAKAYLRKGTACMKL--------------------EEYQTAKAALEKGASLAP-GDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             HHHHhCcCCHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999875                    889999999999999999 778988889988777743

>KOG0548|consensus

Probab=99.38  E-value=3.3e-11  Score=107.22  Aligned_cols=180  Identities=17%  Similarity=0.079  Sum_probs=137.6

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc--c-------------------------CcHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR--E-------------------------NDKEASEKYILQ   97 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~--~-------------------------~~~~~~~~~~~~   97 (259)
                      .++..|++.|..++..+ .+..-+.+.+-+|+.+|.+..-  .                         +..-.+.+.++.
T Consensus       238 k~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~  316 (539)
T KOG0548|consen  238 KDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG  316 (539)
T ss_pred             hhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence            78999999999999999 8888899999999988865520  0                         001134566888


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHhhchh--------hHH---------HHHhcHHHHHHHHHHHHccCCCChhHH
Q psy9159          98 GIEYAKKAMELAPNNSNTQKWYGICVGANGQFQ--------SLK---------EKIKCGVVFRDQMNKAIQMAPKDFTLY  160 (259)
Q Consensus        98 A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~--------~~~---------~~~~~~~~a~~~~~kAl~l~P~~~~~~  160 (259)
                      |+.+++++++-.-+ ++....+-.+-...+..+        .+.         -+.++...|..+|.+||..+|+++..|
T Consensus       317 ai~~~~kaLte~Rt-~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lY  395 (539)
T KOG0548|consen  317 AIKYYQKALTEHRT-PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLY  395 (539)
T ss_pred             HHHHHHHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHH
Confidence            99999998876654 332222221111111110        000         012234467899999999999999999


Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         161 SLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       161 ~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                      .+++.+|..+                    |.+..|++..+++++++| +++..|+.-|.++..+++|++|.+.|.++++
T Consensus       396 sNRAac~~kL--------------------~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale  454 (539)
T KOG0548|consen  396 SNRAACYLKL--------------------GEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALE  454 (539)
T ss_pred             HHHHHHHHHH--------------------hhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999886                    779999999999999999 8899999999999999999999999999999


Q ss_pred             CCCCCcc
Q psy9159         241 IPVVSYE  247 (259)
Q Consensus       241 l~p~~~~  247 (259)
                      ++|.+.+
T Consensus       455 ~dp~~~e  461 (539)
T KOG0548|consen  455 LDPSNAE  461 (539)
T ss_pred             cCchhHH
Confidence            9988765

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.36  E-value=2.2e-10  Score=96.58  Aligned_cols=187  Identities=16%  Similarity=0.161  Sum_probs=141.3

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc----------c---C-cH-------
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR----------E---N-DK-------   88 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~----------~---~-~~-------   88 (259)
                      +.+...+.++   + .+.++|++.|-++++.+|...++.+.||..+.+.|..++.          +   . .+       
T Consensus        38 ~Yv~GlNfLL---s-~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL  113 (389)
T COG2956          38 DYVKGLNFLL---S-NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL  113 (389)
T ss_pred             HHHhHHHHHh---h-cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            3455566666   5 7999999999999999999999999999999999976531          0   0 00       


Q ss_pred             -------------------------------------HHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhh
Q psy9159          89 -------------------------------------EASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQS  131 (259)
Q Consensus        89 -------------------------------------~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~  131 (259)
                                                           -+....+++|++..++.+++.|+.-..  .++..+..+.+...
T Consensus       114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~--eIAqfyCELAq~~~  191 (389)
T COG2956         114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV--EIAQFYCELAQQAL  191 (389)
T ss_pred             HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh--HHHHHHHHHHHHHh
Confidence                                                 022344566666666666666654432  34444444433222


Q ss_pred             HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc
Q psy9159         132 LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW  211 (259)
Q Consensus       132 ~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~  211 (259)
                      ..   .+...+...++||++-||+...+-..+|++....                    |+|+.|++.++.+++.||...
T Consensus       192 ~~---~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~--------------------g~y~~AV~~~e~v~eQn~~yl  248 (389)
T COG2956         192 AS---SDVDRARELLKKALQADKKCVRASIILGRVELAK--------------------GDYQKAVEALERVLEQNPEYL  248 (389)
T ss_pred             hh---hhHHHHHHHHHHHHhhCccceehhhhhhHHHHhc--------------------cchHHHHHHHHHHHHhChHHH
Confidence            11   1223567889999999999999999999988764                    889999999999999999666


Q ss_pred             HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159         212 KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       212 ~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~  245 (259)
                      +.+.-.|..||..+|+.++.+.++.++.+..+..
T Consensus       249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~  282 (389)
T COG2956         249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA  282 (389)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence            7888899999999999999999999999987764

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.36  E-value=4.1e-11  Score=92.15  Aligned_cols=108  Identities=11%  Similarity=-0.010  Sum_probs=99.1

Q ss_pred             HHhhcC-CCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHH
Q psy9159          56 ELNNKQ-PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKE  134 (259)
Q Consensus        56 ~~~~~~-p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~  134 (259)
                      .+...+ ++.-+.++.+|..++..|++.              +|...|+-...+||.++..|+.||.++...|++.    
T Consensus        25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~--------------~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~----   86 (157)
T PRK15363         25 MLLDDDVTQPLNTLYRYAMQLMEVKEFA--------------GAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWG----   86 (157)
T ss_pred             HHHCCChHHHHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHH----
Confidence            344567 788899999999999999875              9999999999999999999999999999999988    


Q ss_pred             HHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC
Q psy9159         135 KIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA  207 (259)
Q Consensus       135 ~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~  207 (259)
                            +|+..|.+|+.++|+++.+++.+|.+++.+                    |+.+.|+++|+.|+..-
T Consensus        87 ------~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l--------------------G~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363         87 ------EAIYAYGRAAQIKIDAPQAPWAAAECYLAC--------------------DNVCYAIKALKAVVRIC  133 (157)
T ss_pred             ------HHHHHHHHHHhcCCCCchHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHh
Confidence                  578999999999999999999999999886                    78999999999999986

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.36  E-value=3.1e-12  Score=85.77  Aligned_cols=68  Identities=24%  Similarity=0.312  Sum_probs=63.6

Q ss_pred             CChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhC-CHHHHHH
Q psy9159         155 KDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAG-EYAKAVQ  233 (259)
Q Consensus       155 ~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g-~~~eA~~  233 (259)
                      .++.+|..+|.+++..                    |++++|+.+|+++++++| +++.+++++|.++..+| ++++|++
T Consensus         1 e~a~~~~~~g~~~~~~--------------------~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~   59 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQ--------------------GDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIE   59 (69)
T ss_dssp             TSHHHHHHHHHHHHHT--------------------THHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHH
Confidence            3678999999999885                    889999999999999999 78999999999999999 7999999


Q ss_pred             HHHHHhcCCC
Q psy9159         234 WLDKAKAIPV  243 (259)
Q Consensus       234 ~~~kal~l~p  243 (259)
                      .++++++++|
T Consensus        60 ~~~~al~l~P   69 (69)
T PF13414_consen   60 DFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHST
T ss_pred             HHHHHHHcCc
Confidence            9999999998

...

>TIGR00540 hemY_coli hemY protein

Probab=99.35  E-value=3.5e-10  Score=101.92  Aligned_cols=214  Identities=16%  Similarity=0.059  Sum_probs=161.0

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------cCc-H-HH------
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------END-K-EA------   90 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~~~-~-~~------   90 (259)
                      ..+.++-..+  .. |+++.|.+.+.++.+..|+..-.+...|.++...|++...           +.+ . .+      
T Consensus        86 ~~~~~glla~--~~-g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l  162 (409)
T TIGR00540        86 KQTEEALLKL--AE-GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI  162 (409)
T ss_pred             HHHHHHHHHH--hC-CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence            3466666666  56 9999999999999999998888888889999988876531           111 1 11      


Q ss_pred             --HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHH-----------------------H----
Q psy9159          91 --SEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGV-----------------------V----  141 (259)
Q Consensus        91 --~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~-----------------------~----  141 (259)
                        ..+.+++|+..+++.++..|+++.++..++.++...|++..+...+....                       .    
T Consensus       163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~  242 (409)
T TIGR00540       163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD  242 (409)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence              13568999999999999999999999999999999998875443211110                       0    


Q ss_pred             -HHHHHHHHHccCC----CChhHHHHHHHHHHHhhccchHHHHHHHHHh----------------cCCCCCcHHHHHHHH
Q psy9159         142 -FRDQMNKAIQMAP----KDFTLYSLKGRYQYEISKLSFFERKIAVLIV----------------SDLDEPTAEDAIANC  200 (259)
Q Consensus       142 -a~~~~~kAl~l~P----~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~----------------~~~~~g~~~eAi~~~  200 (259)
                       ..+.+.++.+..|    +++..+..+|..+...++.+.....+...+-                .....++.+.+++.+
T Consensus       243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~  322 (409)
T TIGR00540       243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI  322 (409)
T ss_pred             cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence             1135666677788    5899999999999888776544333322111                112247789999999


Q ss_pred             HHHHhhCCCCcH--HhHHHHHHHHHHhCCHHHHHHHHH--HHhcCCCCCcc
Q psy9159         201 LKAEELAPAPWK--ENQLLIAKCYIEAGEYAKAVQWLD--KAKAIPVVSYE  247 (259)
Q Consensus       201 ~kAi~l~P~~~~--~~~~~la~~~~~~g~~~eA~~~~~--kal~l~p~~~~  247 (259)
                      +++++..| +++  .....+|.++...|++++|.++|+  ++++.+|++..
T Consensus       323 e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~  372 (409)
T TIGR00540       323 EKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND  372 (409)
T ss_pred             HHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence            99999999 778  778899999999999999999999  57778876543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=5.9e-11  Score=99.58  Aligned_cols=126  Identities=16%  Similarity=0.071  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc
Q psy9159          95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS  174 (259)
Q Consensus        95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~  174 (259)
                      .++-+..++.-|..+|+|++.|..+|.++...+++.          .+...|.+|+++.|+|+..+..+|.+++...+  
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~----------~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~--  205 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRAS----------DALLAYRNALRLAGDNPEILLGLAEALYYQAG--  205 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchh----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--
Confidence            567778889999999999999999999999999887          46789999999999999999999998877644  


Q ss_pred             hHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         175 FFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                                     .....++...+++++.+|| .++.+.+.||..++..|++++|+...++.+.+.|-++.-
T Consensus       206 ---------------~~~ta~a~~ll~~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r  263 (287)
T COG4235         206 ---------------QQMTAKARALLRQALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR  263 (287)
T ss_pred             ---------------CcccHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence                           3557999999999999999 789999999999999999999999999999988877653

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.32  E-value=1.2e-10  Score=102.53  Aligned_cols=160  Identities=11%  Similarity=0.059  Sum_probs=124.4

Q ss_pred             CCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPND---PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI  121 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~  121 (259)
                      |+.+++...+.++.+..|.+   .+..+..|.++...|++.              +|...++++++.+|++..++.. +.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~--------------~A~~~~~~~l~~~P~~~~a~~~-~~   84 (355)
T cd05804          20 GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLP--------------KALALLEQLLDDYPRDLLALKL-HL   84 (355)
T ss_pred             CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHCCCcHHHHHH-hH
Confidence            67777777777777666644   566777788888877764              9999999999999999988765 65


Q ss_pred             HHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH
Q psy9159         122 CVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL  201 (259)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~  201 (259)
                      .+...+...+...      .+.+.+......+|..+.++..+|.++...                    |++++|+..++
T Consensus        85 ~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~--------------------G~~~~A~~~~~  138 (355)
T cd05804          85 GAFGLGDFSGMRD------HVARVLPLWAPENPDYWYLLGMLAFGLEEA--------------------GQYDRAEEAAR  138 (355)
T ss_pred             HHHHhcccccCch------hHHHHHhccCcCCCCcHHHHHHHHHHHHHc--------------------CCHHHHHHHHH
Confidence            6666665543221      122333344466777777777888887764                    88999999999


Q ss_pred             HHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         202 KAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       202 kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      ++++++| ++..++..+|.++...|++++|+.++++++...|.++
T Consensus       139 ~al~~~p-~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~  182 (355)
T cd05804         139 RALELNP-DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS  182 (355)
T ss_pred             HHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence            9999999 6788899999999999999999999999999988643

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.32  E-value=9.4e-10  Score=92.12  Aligned_cols=185  Identities=14%  Similarity=0.071  Sum_probs=131.7

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHH---HHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHH
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVL---YRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM  106 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~---~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal  106 (259)
                      +.+..+...+  .. |++++|+..|++++..+|.++.+-   +.+|.+|+..+++.              +|+..+++.+
T Consensus        34 ~~Y~~A~~~~--~~-g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~--------------~A~~~~e~fi   96 (243)
T PRK10866         34 EIYATAQQKL--QD-GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLP--------------LAQAAIDRFI   96 (243)
T ss_pred             HHHHHHHHHH--HC-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHH--------------HHHHHHHHHH
Confidence            3567788888  67 999999999999999999998776   88999999998875              9999999999


Q ss_pred             HhCCCChHH---HHHHHHHHHHhhc-----h---hhHHHHHhcHHHHHHHHHHHHccCCCChh---HHHHHHHHHHHhhc
Q psy9159         107 ELAPNNSNT---QKWYGICVGANGQ-----F---QSLKEKIKCGVVFRDQMNKAIQMAPKDFT---LYSLKGRYQYEISK  172 (259)
Q Consensus       107 ~~~P~~~~~---~~~la~~~~~~~~-----~---~~~~~~~~~~~~a~~~~~kAl~l~P~~~~---~~~~lG~~~~~~~~  172 (259)
                      +..|+++.+   ++.+|.+....+.     +   ............+...+++.|+..|+..-   +...+..+...+..
T Consensus        97 ~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~  176 (243)
T PRK10866         97 RLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK  176 (243)
T ss_pred             HhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence            999998765   4555555332321     1   00111122234677899999999999764   33333333332222


Q ss_pred             cchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc---HHhHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159         173 LSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW---KENQLLIAKCYIEAGEYAKAVQWLDKA  238 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~---~~~~~~la~~~~~~g~~~eA~~~~~ka  238 (259)
                      .+.   .++..++-   .|+|.-|+.-++..++--| +.   .++...++.+|..+|..++|.++....
T Consensus       177 ~e~---~ia~~Y~~---~~~y~AA~~r~~~v~~~Yp-~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        177 YEL---SVAEYYTK---RGAYVAVVNRVEQMLRDYP-DTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHH---HHHHHHHH---cCchHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            111   11111111   4889999999999999888 44   356888999999999999999877654

>KOG0495|consensus

Probab=99.32  E-value=1.8e-10  Score=104.77  Aligned_cols=175  Identities=18%  Similarity=0.101  Sum_probs=128.1

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      ++.++|+.+++++++.+|+.+-+|.++|.++.++++..              .|.+.|...+..-|+.+..|..++.+-.
T Consensus       665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie--------------~aR~aY~~G~k~cP~~ipLWllLakleE  730 (913)
T KOG0495|consen  665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIE--------------MAREAYLQGTKKCPNSIPLWLLLAKLEE  730 (913)
T ss_pred             hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHH--------------HHHHHHHhccccCCCCchHHHHHHHHHH
Confidence            78999999999999999999999999999999988765              7777777777777777777766666555


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHH-----------------------
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIA-----------------------  181 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~-----------------------  181 (259)
                      ..|+..          +|...++++...||+++..|...-++-.+.|..+.....++                       
T Consensus       731 k~~~~~----------rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~  800 (913)
T KOG0495|consen  731 KDGQLV----------RARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP  800 (913)
T ss_pred             Hhcchh----------hHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc
Confidence            554433          45667777777777777777666665555544332221111                       


Q ss_pred             ------------------------HHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHH
Q psy9159         182 ------------------------VLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDK  237 (259)
Q Consensus       182 ------------------------~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~k  237 (259)
                                              .++..   ..++++|.++|.+|+.++| ++..+|...-..+...|.-+.-.+.+.+
T Consensus       801 ~rkTks~DALkkce~dphVllaia~lfw~---e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~  876 (913)
T KOG0495|consen  801 QRKTKSIDALKKCEHDPHVLLAIAKLFWS---EKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKK  876 (913)
T ss_pred             ccchHHHHHHHhccCCchhHHHHHHHHHH---HHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                                    11111   3668888888888888888 7788888888888888888888888888


Q ss_pred             HhcCCCCCcc
Q psy9159         238 AKAIPVVSYE  247 (259)
Q Consensus       238 al~l~p~~~~  247 (259)
                      ....+|...+
T Consensus       877 c~~~EP~hG~  886 (913)
T KOG0495|consen  877 CETAEPTHGE  886 (913)
T ss_pred             HhccCCCCCc
Confidence            8888887654

>KOG3060|consensus

Probab=99.30  E-value=3.8e-10  Score=92.22  Aligned_cols=138  Identities=13%  Similarity=0.052  Sum_probs=122.2

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI  121 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~  121 (259)
                      .+ |++++|+++|+..++.||.|..++-+.-.+...+|+-.              +|+....+-++.=|+++++|..++.
T Consensus        98 a~-~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l--------------~aIk~ln~YL~~F~~D~EAW~eLae  162 (289)
T KOG3060|consen   98 AT-GNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL--------------EAIKELNEYLDKFMNDQEAWHELAE  162 (289)
T ss_pred             Hh-hchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH--------------HHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            66 99999999999999999999999988777777778754              8999999999999999999999999


Q ss_pred             HHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH
Q psy9159         122 CVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL  201 (259)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~  201 (259)
                      ++...++|.          +|.-++++.+-++|.++.++..+|.+++..|..                 .+++-|.++|.
T Consensus       163 iY~~~~~f~----------kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~-----------------eN~~~arkyy~  215 (289)
T KOG3060|consen  163 IYLSEGDFE----------KAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGA-----------------ENLELARKYYE  215 (289)
T ss_pred             HHHhHhHHH----------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH-----------------HHHHHHHHHHH
Confidence            999999887          567899999999999999999999999887542                 67899999999


Q ss_pred             HHHhhCCCCcHHhHHHHHHHH
Q psy9159         202 KAEELAPAPWKENQLLIAKCY  222 (259)
Q Consensus       202 kAi~l~P~~~~~~~~~la~~~  222 (259)
                      +|++++| .+..+++.+-.|-
T Consensus       216 ~alkl~~-~~~ral~GI~lc~  235 (289)
T KOG3060|consen  216 RALKLNP-KNLRALFGIYLCG  235 (289)
T ss_pred             HHHHhCh-HhHHHHHHHHHHH
Confidence            9999999 7778777665553

>KOG4162|consensus

Probab=99.27  E-value=1.9e-10  Score=106.19  Aligned_cols=122  Identities=13%  Similarity=0.180  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccch
Q psy9159          96 LQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF  175 (259)
Q Consensus        96 ~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~  175 (259)
                      ++|...+.++-.++|..+..|+..|.++...|+..          ++++.|..|+.+||+++.....+|.++.+.|+   
T Consensus       667 ~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~----------EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~---  733 (799)
T KOG4162|consen  667 DEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLE----------EAKEAFLVALALDPDHVPSMTALAELLLELGS---  733 (799)
T ss_pred             hHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhH----------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC---
Confidence            48999999999999999999999999998888776          56789999999999999999999999998754   


Q ss_pred             HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         176 FERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                                     .+..++...+..|+++|| .+..+|++||.++..+|+.+.|.++|.-|+++++.+|
T Consensus       734 ---------------~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  734 ---------------PRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             ---------------cchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence                           455666669999999999 8999999999999999999999999999999998877

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=99.27  E-value=3.6e-10  Score=88.20  Aligned_cols=119  Identities=16%  Similarity=0.061  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHH
Q psy9159          90 ASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYE  169 (259)
Q Consensus        90 ~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~  169 (259)
                      +++-.|+.|++.++.....+|.+++.+.+.|.++..+.++....+......+++.-+++||.++|+...+++.+|..|..
T Consensus         2 ~rl~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts   81 (186)
T PF06552_consen    2 ERLLFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS   81 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            45667899999999999999999999999999999999987766666677788999999999999999999999999988


Q ss_pred             hhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHH
Q psy9159         170 ISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI  218 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~l  218 (259)
                      .+.+.-- ...+        ...|++|.+||++|++.+| .+...+..|
T Consensus        82 ~A~l~~d-~~~A--------~~~F~kA~~~FqkAv~~~P-~ne~Y~ksL  120 (186)
T PF06552_consen   82 LAFLTPD-TAEA--------EEYFEKATEYFQKAVDEDP-NNELYRKSL  120 (186)
T ss_dssp             HHHH----HHHH--------HHHHHHHHHHHHHHHHH-T-T-HHHHHHH
T ss_pred             HHhhcCC-hHHH--------HHHHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence            7543100 0001        1348999999999999999 654433333

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.27  E-value=1.9e-10  Score=105.92  Aligned_cols=166  Identities=16%  Similarity=0.073  Sum_probs=121.0

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh--C
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL--A  109 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~--~  109 (259)
                      +.++..++...+.+++.+|+.+|+++++.+|+++.++-.++.+|.....+..      ........+.+..++++.+  +
T Consensus       343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~------~~~~~l~~a~~~~~~a~al~~~  416 (517)
T PRK10153        343 FYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP------LDEKQLAALSTELDNIVALPEL  416 (517)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHhhhcccC
Confidence            4455454422233569999999999999999999999999999877654431      1123446777777787775  8


Q ss_pred             CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159         110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD  189 (259)
Q Consensus       110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~  189 (259)
                      |.++.+|..+|......|++.          .|...+++|++++| ++.+|..+|.++...                   
T Consensus       417 ~~~~~~~~ala~~~~~~g~~~----------~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~-------------------  466 (517)
T PRK10153        417 NVLPRIYEILAVQALVKGKTD----------EAYQAINKAIDLEM-SWLNYVLLGKVYELK-------------------  466 (517)
T ss_pred             cCChHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHc-------------------
Confidence            888888888888877777776          56789999999999 589999999988764                   


Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHH
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDK  237 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~k  237 (259)
                       |++++|+++|++|+.++| ..+.  +.+..-+...-+.+.-.-++.+
T Consensus       467 -G~~~eA~~~~~~A~~L~P-~~pt--~~~~~~~~f~~~~~~~~~~~~~  510 (517)
T PRK10153        467 -GDNRLAADAYSTAFNLRP-GENT--LYWIENLVFQTSVETVVPYLYR  510 (517)
T ss_pred             -CCHHHHHHHHHHHHhcCC-CCch--HHHHHhccccccHHHHHHHHHh
Confidence             899999999999999999 4432  2233333333343333333333

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.26  E-value=1.7e-10  Score=110.68  Aligned_cols=192  Identities=7%  Similarity=-0.078  Sum_probs=148.3

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhccc----CcHHHHHHHHHHHHHHHHHHHHhCCCChHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRE----NDKEASEKYILQGIEYAKKAMELAPNNSNTQK  117 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~----~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~  117 (259)
                      .. +++++|++..+..++.+|+.+.+++.+|.++.+.++.....    .+.......+ .+.+++-.++...|++..+++
T Consensus        43 ~~-~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~  120 (906)
T PRK14720         43 SE-NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILLYGENKLALR  120 (906)
T ss_pred             hc-CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHHH
Confidence            45 99999999999999999999999999999999888754210    0000011122 677778888888899999999


Q ss_pred             HHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHH
Q psy9159         118 WYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAI  197 (259)
Q Consensus       118 ~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi  197 (259)
                      .+|.|+-.+|+..          ++...++++|++||+|+.+..++|..|... +++....-...++......++|.++.
T Consensus       121 ~LA~~Ydk~g~~~----------ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~  189 (906)
T PRK14720        121 TLAEAYAKLNENK----------KLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIE  189 (906)
T ss_pred             HHHHHHHHcCChH----------HHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHH
Confidence            9999999998877          567899999999999999999999988777 66543322222222222347899999


Q ss_pred             HHHHHHHhhCCCCcHHh--------HHHHH------------HHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         198 ANCLKAEELAPAPWKEN--------QLLIA------------KCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       198 ~~~~kAi~l~P~~~~~~--------~~~la------------~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      +.+.+.+..+| +....        .-.++            .+|...++++++++.++++++++|.|-.
T Consensus       190 e~W~k~~~~~~-~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~  258 (906)
T PRK14720        190 EIWSKLVHYNS-DDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK  258 (906)
T ss_pred             HHHHHHHhcCc-ccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence            99999999999 54433        22334            8899999999999999999999988653

>KOG2076|consensus

Probab=99.25  E-value=3.4e-10  Score=106.01  Aligned_cols=119  Identities=14%  Similarity=0.117  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhcc
Q psy9159          94 YILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKL  173 (259)
Q Consensus        94 ~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~  173 (259)
                      ++++|...+.++|.++|.++.+|+.+|.++...|+.+          ++....-.|--++|++++.|..++....++   
T Consensus       154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~e----------K~l~~~llAAHL~p~d~e~W~~ladls~~~---  220 (895)
T KOG2076|consen  154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIE----------KALNFWLLAAHLNPKDYELWKRLADLSEQL---  220 (895)
T ss_pred             CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHH----------HHHHHHHHHHhcCCCChHHHHHHHHHHHhc---
Confidence            3569999999999999999999999999999999876          455666777889999999999999876664   


Q ss_pred             chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159         174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV  243 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p  243 (259)
                                       |.++.|+-||.+||+.+| .+.......+..|.++|+...|.+.|.+++++.|
T Consensus       221 -----------------~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  221 -----------------GNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             -----------------ccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence                             789999999999999999 6778888899999999999999999999999999

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.24  E-value=2.1e-10  Score=90.72  Aligned_cols=146  Identities=13%  Similarity=0.029  Sum_probs=110.1

Q ss_pred             CCHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC---hHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPND--PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN---SNTQKWY  119 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~---~~~~~~l  119 (259)
                      ..+..+.+.+...++.++.+  ...++.+|.++...|++.              +|+..+++++.+.|+.   +.++..+
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~--------------~A~~~~~~al~l~~~~~~~~~~~~~l   78 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYA--------------EALQNYYEAMRLEIDPYDRSYILYNI   78 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHhccccchhhHHHHHHH
Confidence            56777778887776666666  677788999999888865              9999999999998774   4588999


Q ss_pred             HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhcc----chHHHHHHHHHhcCCCCCcHHH
Q psy9159         120 GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKL----SFFERKIAVLIVSDLDEPTAED  195 (259)
Q Consensus       120 a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~e  195 (259)
                      |.++...|++.          .+...++++++++|.+...+..+|.++...+..    ..+..+          ...+++
T Consensus        79 g~~~~~~g~~~----------eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A----------~~~~~~  138 (168)
T CHL00033         79 GLIHTSNGEHT----------KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIA----------EAWFDQ  138 (168)
T ss_pred             HHHHHHcCCHH----------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHH----------HHHHHH
Confidence            99999998887          567899999999999999999999998855421    011111          133668


Q ss_pred             HHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCH
Q psy9159         196 AIANCLKAEELAPAPWKENQLLIAKCYIEAGEY  228 (259)
Q Consensus       196 Ai~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~  228 (259)
                      |+.+|++++..+| .+.   ...+..+...|++
T Consensus       139 a~~~~~~a~~~~p-~~~---~~~~~~~~~~~~~  167 (168)
T CHL00033        139 AAEYWKQAIALAP-GNY---IEAQNWLKITGRF  167 (168)
T ss_pred             HHHHHHHHHHhCc-ccH---HHHHHHHHHhcCC
Confidence            8888889999999 432   3445555566654

>KOG1174|consensus

Probab=99.24  E-value=9.1e-10  Score=95.58  Aligned_cols=167  Identities=17%  Similarity=0.148  Sum_probs=141.6

Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q psy9159          46 DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGA  125 (259)
Q Consensus        46 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~  125 (259)
                      .+.-+..++-+-....|+|++.+-.+|.+++..|+..              +|+..|+++.-+||.+..+.-.+|.++++
T Consensus       213 s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~--------------~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~  278 (564)
T KOG1174|consen  213 SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF--------------QAEDIFSSTLCANPDNVEAMDLYAVLLGQ  278 (564)
T ss_pred             chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch--------------HHHHHHHHHhhCChhhhhhHHHHHHHHHh
Confidence            3444455666778889999999999999999999875              99999999999999999999999999999


Q ss_pred             hhchhhHHHHH------------------------hcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHH
Q psy9159         126 NGQFQSLKEKI------------------------KCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIA  181 (259)
Q Consensus       126 ~~~~~~~~~~~------------------------~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~  181 (259)
                      .|+++......                        .....|..+.+|+|+++|++..++...|+.+..+           
T Consensus       279 eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~-----------  347 (564)
T KOG1174|consen  279 EGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL-----------  347 (564)
T ss_pred             ccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc-----------
Confidence            88776432211                        1123566778999999999999999999988775           


Q ss_pred             HHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         182 VLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       182 ~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                               |+.++|+-+|..|+.+.| ...+.|.-|-.+|...|++.||.-.-+.+...-|.++.
T Consensus       348 ---------~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~  403 (564)
T KOG1174|consen  348 ---------ERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR  403 (564)
T ss_pred             ---------cchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence                     889999999999999999 77888999999999999999999988888888777664

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.22  E-value=2.8e-10  Score=90.32  Aligned_cols=133  Identities=15%  Similarity=0.106  Sum_probs=101.5

Q ss_pred             CCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhchhhHHHHHh
Q psy9159          61 QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN---SNTQKWYGICVGANGQFQSLKEKIK  137 (259)
Q Consensus        61 ~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~---~~~~~~la~~~~~~~~~~~~~~~~~  137 (259)
                      .|..+.+++.+|..+...|++.              +|+.++++++++.|+.   +.++..+|.++...|++.       
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~--------------~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~-------   89 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYA--------------EALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHD-------   89 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHH-------
Confidence            4566778899999999888875              9999999999998774   468899999999999887       


Q ss_pred             cHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHH
Q psy9159         138 CGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLL  217 (259)
Q Consensus       138 ~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~  217 (259)
                         .+...++++++++|+++.++..+|.++...+...........+.      ..+++|++++++++.++| ++   +..
T Consensus        90 ---~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~------~~~~~A~~~~~~a~~~~p-~~---~~~  156 (172)
T PRK02603         90 ---KALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAE------ALFDKAAEYWKQAIRLAP-NN---YIE  156 (172)
T ss_pred             ---HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHH------HHHHHHHHHHHHHHhhCc-hh---HHH
Confidence               56789999999999999999999999988765322111111111      447889999999999999 43   444


Q ss_pred             HHHHHHHhCC
Q psy9159         218 IAKCYIEAGE  227 (259)
Q Consensus       218 la~~~~~~g~  227 (259)
                      .+..+...|+
T Consensus       157 ~~~~~~~~~~  166 (172)
T PRK02603        157 AQNWLKTTGR  166 (172)
T ss_pred             HHHHHHhcCc
Confidence            5555555443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.22  E-value=5.3e-10  Score=107.84  Aligned_cols=150  Identities=13%  Similarity=0.008  Sum_probs=125.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhh
Q psy9159          52 NLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQS  131 (259)
Q Consensus        52 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~  131 (259)
                      .++--..-..|+.++..+..+.+..+.|++.              .|++.++++++.+|+++.+..-+..+++..|+.. 
T Consensus        21 ~~~~~~~~~~p~~~~~~y~~aii~~r~Gd~~--------------~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~-   85 (822)
T PRK14574         21 ALFISGFVVNPAMADTQYDSLIIRARAGDTA--------------PVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQ-   85 (822)
T ss_pred             HHHHcccccCccchhHHHHHHHHHHhCCCHH--------------HHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcH-
Confidence            3444445578999999999999999999875              9999999999999999654446667777777766 


Q ss_pred             HHHHHhcHHHHHHHHHHHHccCCCChhHHHHH--HHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC
Q psy9159         132 LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLK--GRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA  209 (259)
Q Consensus       132 ~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~l--G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~  209 (259)
                               .|..++++++  +|.+..++..+  |.++...                    |++++|++.|+++++.+| 
T Consensus        86 ---------~A~~~~eka~--~p~n~~~~~llalA~ly~~~--------------------gdyd~Aiely~kaL~~dP-  133 (822)
T PRK14574         86 ---------EVIDVYERYQ--SSMNISSRGLASAARAYRNE--------------------KRWDQALALWQSSLKKDP-  133 (822)
T ss_pred             ---------HHHHHHHHhc--cCCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHhhCC-
Confidence                     5678999998  77777666666  6677664                    889999999999999999 


Q ss_pred             CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         210 PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       210 ~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                      +++.++..++.++...++.++|++.+++++..+|.+...
T Consensus       134 ~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~  172 (822)
T PRK14574        134 TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY  172 (822)
T ss_pred             CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence            779999999999999999999999999999999985543

>KOG1173|consensus

Probab=99.20  E-value=1.5e-09  Score=97.40  Aligned_cols=188  Identities=16%  Similarity=0.034  Sum_probs=147.7

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      ...++.++  .. ++|++.++..+..++.+|-+++++..---++...|+..              +-...-.+.+...|+
T Consensus       248 ~~~ad~~y--~~-c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n--------------~Lf~lsh~LV~~yP~  310 (611)
T KOG1173|consen  248 AEKADRLY--YG-CRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSN--------------KLFLLSHKLVDLYPS  310 (611)
T ss_pred             HHHHHHHH--Hc-ChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccc--------------hHHHHHHHHHHhCCC
Confidence            57788888  56 99999999999999999988887755433667777654              555666788899999


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHH---HHHhcC-
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIA---VLIVSD-  187 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~---~~~~~~-  187 (259)
                      .+..|+..|.-+...+...          +|.+++.||-.+||+...+|...|..+.-.+..+....+.-   +.+-|. 
T Consensus       311 ~a~sW~aVg~YYl~i~k~s----------eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h  380 (611)
T KOG1173|consen  311 KALSWFAVGCYYLMIGKYS----------EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH  380 (611)
T ss_pred             CCcchhhHHHHHHHhcCcH----------HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc
Confidence            9999999998888887776          57899999999999999999999998765544333222221   111111 


Q ss_pred             ----------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         188 ----------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       188 ----------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                                ..+++++-|.++|..|+.+.| ..+-+...+|.+....+.+.+|+.+|+++++--+....
T Consensus       381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~  449 (611)
T KOG1173|consen  381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN  449 (611)
T ss_pred             chHHHHHHHHHHhccHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence                      126899999999999999999 66888999999999999999999999999954444333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.20  E-value=4.8e-10  Score=82.60  Aligned_cols=109  Identities=16%  Similarity=0.037  Sum_probs=92.9

Q ss_pred             hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC---hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159         113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD---FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD  189 (259)
Q Consensus       113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~---~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~  189 (259)
                      +++++..|..+...|++.          .+...++++++.+|++   +.+++.+|.+++..                   
T Consensus         2 ~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------   52 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYA----------DAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ-------------------   52 (119)
T ss_pred             cHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh-------------------
Confidence            356677888888888876          5678899999999987   46899999999875                   


Q ss_pred             CCcHHHHHHHHHHHHhhCCCC--cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159         190 EPTAEDAIANCLKAEELAPAP--WKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL  251 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~--~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~  251 (259)
                       |++++|+.+|++++...|++  ...++..+|.++..+|++++|++.++++++..|.++.....
T Consensus        53 -~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        53 -GKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             -ccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence             88999999999999999843  25679999999999999999999999999999988765544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0548|consensus

Probab=99.19  E-value=4.5e-10  Score=100.14  Aligned_cols=161  Identities=16%  Similarity=0.195  Sum_probs=121.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-------------cCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-------------ENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-------------~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      ++++.|+..|.+++...-. |+++..+-.+--..+.....             .+...-+.+.+..|+..|.+||..+|+
T Consensus       312 ~~~~~ai~~~~kaLte~Rt-~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~  390 (539)
T KOG0548|consen  312 EDYEGAIKYYQKALTEHRT-PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE  390 (539)
T ss_pred             HhHHHHHHHHHHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence            7788888888887765433 45544443333222221100             011123456678999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCC
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEP  191 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g  191 (259)
                      ++..+-+.|.|+..+|++.          .+....+++|+++|+...+|...|.++..+                    .
T Consensus       391 Da~lYsNRAac~~kL~~~~----------~aL~Da~~~ieL~p~~~kgy~RKg~al~~m--------------------k  440 (539)
T KOG0548|consen  391 DARLYSNRAACYLKLGEYP----------EALKDAKKCIELDPNFIKAYLRKGAALRAM--------------------K  440 (539)
T ss_pred             hhHHHHHHHHHHHHHhhHH----------HHHHHHHHHHhcCchHHHHHHHHHHHHHHH--------------------H
Confidence            9999999999999999887          456778999999999999999999998776                    5


Q ss_pred             cHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHH
Q psy9159         192 TAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDK  237 (259)
Q Consensus       192 ~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~k  237 (259)
                      +|++|++.|++++++|| ++.++.-.+..|+..+.......+..++
T Consensus       441 ~ydkAleay~eale~dp-~~~e~~~~~~rc~~a~~~~~~~ee~~~r  485 (539)
T KOG0548|consen  441 EYDKALEAYQEALELDP-SNAEAIDGYRRCVEAQRGDETPEETKRR  485 (539)
T ss_pred             HHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence            69999999999999999 7788888888898876444455555555

>KOG1156|consensus

Probab=99.19  E-value=3.9e-10  Score=102.40  Aligned_cols=171  Identities=12%  Similarity=0.131  Sum_probs=150.5

Q ss_pred             hhccCCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHH
Q psy9159          25 FAVNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKK  104 (259)
Q Consensus        25 ~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~k  104 (259)
                      +++....+.++-.++  .. ++|++.+...+.+++.+|++++.+-..|..+..+|+..              +|.+....
T Consensus         4 ~~KE~~lF~~~lk~y--E~-kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~--------------ea~~~vr~   66 (700)
T KOG1156|consen    4 SPKENALFRRALKCY--ET-KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKE--------------EAYELVRL   66 (700)
T ss_pred             ChHHHHHHHHHHHHH--HH-HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchH--------------HHHHHHHH
Confidence            344445677888888  67 99999999999999999999999999999999999875              99999999


Q ss_pred             HHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHH
Q psy9159         105 AMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLI  184 (259)
Q Consensus       105 al~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~  184 (259)
                      ++..||.+..+|.-+|.++..-.++.          +++++|..|+.++|+|-..|.-++.+..++              
T Consensus        67 glr~d~~S~vCwHv~gl~~R~dK~Y~----------eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm--------------  122 (700)
T KOG1156|consen   67 GLRNDLKSHVCWHVLGLLQRSDKKYD----------EAIKCYRNALKIEKDNLQILRDLSLLQIQM--------------  122 (700)
T ss_pred             HhccCcccchhHHHHHHHHhhhhhHH----------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHH--------------
Confidence            99999999999999999887776666          578999999999999999999999877666              


Q ss_pred             hcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159         185 VSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV  243 (259)
Q Consensus       185 ~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p  243 (259)
                            ++++-...--.+-+++.| .....|+-.|.+++..|++..|.+.++...+...
T Consensus       123 ------Rd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~  174 (700)
T KOG1156|consen  123 ------RDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN  174 (700)
T ss_pred             ------HhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                  567777888888999999 6678899999999999999999998888877653

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.18  E-value=1.2e-10  Score=77.95  Aligned_cols=68  Identities=24%  Similarity=0.279  Sum_probs=62.8

Q ss_pred             CChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCC
Q psy9159         111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDE  190 (259)
Q Consensus       111 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (259)
                      +++.+|..+|.++...+++.          +|+..|+++|+++|+++.+|+.+|.++..+                    
T Consensus         1 e~a~~~~~~g~~~~~~~~~~----------~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~--------------------   50 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYE----------EAIEYFEKAIELDPNNAEAYYNLGLAYMKL--------------------   50 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHH----------HHHHHHHHHHHHSTTHHHHHHHHHHHHHHT--------------------
T ss_pred             CHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--------------------
Confidence            46888999999999999987          578999999999999999999999999885                    


Q ss_pred             C-cHHHHHHHHHHHHhhCC
Q psy9159         191 P-TAEDAIANCLKAEELAP  208 (259)
Q Consensus       191 g-~~~eAi~~~~kAi~l~P  208 (259)
                      | ++++|+.+++++++++|
T Consensus        51 ~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   51 GKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TTHHHHHHHHHHHHHHHST
T ss_pred             CccHHHHHHHHHHHHHcCc
Confidence            6 69999999999999998

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.17  E-value=7.1e-10  Score=76.67  Aligned_cols=99  Identities=20%  Similarity=0.244  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHH
Q psy9159         115 TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAE  194 (259)
Q Consensus       115 ~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  194 (259)
                      +++.+|.++...+++.          .+...++++++..|+++.++..+|.++...                    |+++
T Consensus         2 ~~~~~a~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~   51 (100)
T cd00189           2 ALLNLGNLYYKLGDYD----------EALEYYEKALELDPDNADAYYNLAAAYYKL--------------------GKYE   51 (100)
T ss_pred             HHHHHHHHHHHHhcHH----------HHHHHHHHHHhcCCccHHHHHHHHHHHHHH--------------------HHHH
Confidence            4566777777777766          567889999999999999999999998875                    6799


Q ss_pred             HHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         195 DAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       195 eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      +|+++|++++++.| .....+..+|.++...|++++|.+.+++++...|.
T Consensus        52 ~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          52 EALEDYEKALELDP-DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            99999999999999 66788999999999999999999999999998873

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.17  E-value=4.9e-09  Score=92.81  Aligned_cols=146  Identities=21%  Similarity=0.103  Sum_probs=127.5

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      +-.+-..+  .. |++++|.+.+...+...|+|+-.+-..+.++...++..              +|.+.+++++.++|+
T Consensus       310 YG~A~~~~--~~-~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~--------------~A~e~~~kal~l~P~  372 (484)
T COG4783         310 YGRALQTY--LA-GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAK--------------EAIERLKKALALDPN  372 (484)
T ss_pred             HHHHHHHH--Hh-cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--------------HHHHHHHHHHhcCCC
Confidence            44455555  45 99999999999999999999999999999999999875              999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCC
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEP  191 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g  191 (259)
                      .+..+..+|.++...|++.          +++..+.+.+.-+|+++..|..|++.|-..++......+.+..++-   .|
T Consensus       373 ~~~l~~~~a~all~~g~~~----------eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~---~G  439 (484)
T COG4783         373 SPLLQLNLAQALLKGGKPQ----------EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL---AG  439 (484)
T ss_pred             ccHHHHHHHHHHHhcCChH----------HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh---CC
Confidence            9999999999999998876          4678889999999999999999999999998876666666554433   49


Q ss_pred             cHHHHHHHHHHHHhhC
Q psy9159         192 TAEDAIANCLKAEELA  207 (259)
Q Consensus       192 ~~~eAi~~~~kAi~l~  207 (259)
                      ++++|+..+.+|.+..
T Consensus       440 ~~~~A~~~l~~A~~~~  455 (484)
T COG4783         440 RLEQAIIFLMRASQQV  455 (484)
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999999976

>KOG4162|consensus

Probab=99.16  E-value=9e-10  Score=101.76  Aligned_cols=124  Identities=14%  Similarity=0.126  Sum_probs=111.1

Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy9159          44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV  123 (259)
Q Consensus        44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~  123 (259)
                      .+.-++|...+.++-+.+|-.+.+|+..|..+...|+..              +|.+.|..|+.+||+++.+...+|.++
T Consensus       663 ~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~--------------EA~~af~~Al~ldP~hv~s~~Ala~~l  728 (799)
T KOG4162|consen  663 SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLE--------------EAKEAFLVALALDPDHVPSMTALAELL  728 (799)
T ss_pred             cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhH--------------HHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            388899999999999999999999999999999988765              999999999999999999999999999


Q ss_pred             HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159         124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA  203 (259)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA  203 (259)
                      ...|+...+        .....+..|+++||.++.+|+.+|.++...                    |+.+.|.+||+-|
T Consensus       729 le~G~~~la--------~~~~~L~dalr~dp~n~eaW~~LG~v~k~~--------------------Gd~~~Aaecf~aa  780 (799)
T KOG4162|consen  729 LELGSPRLA--------EKRSLLSDALRLDPLNHEAWYYLGEVFKKL--------------------GDSKQAAECFQAA  780 (799)
T ss_pred             HHhCCcchH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------------------cchHHHHHHHHHH
Confidence            999965432        123478999999999999999999988764                    8899999999999


Q ss_pred             HhhCCC
Q psy9159         204 EELAPA  209 (259)
Q Consensus       204 i~l~P~  209 (259)
                      +++++.
T Consensus       781 ~qLe~S  786 (799)
T KOG4162|consen  781 LQLEES  786 (799)
T ss_pred             HhhccC
Confidence            999983

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.16  E-value=1.2e-10  Score=77.04  Aligned_cols=56  Identities=20%  Similarity=0.277  Sum_probs=51.9

Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      .|++++|+.+|+++++.+| ++..+++.+|.++..+|++++|+.+|+++++++|++|
T Consensus        10 ~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   10 QGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             CTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             cCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            3889999999999999999 8899999999999999999999999999999999875

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.14  E-value=4.4e-09  Score=93.09  Aligned_cols=136  Identities=15%  Similarity=0.076  Sum_probs=118.2

Q ss_pred             CCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHH
Q psy9159          62 PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVV  141 (259)
Q Consensus        62 p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~  141 (259)
                      |..+.++|..+..++..|...              +|+..+...++..|+|+..+-..+.++...++..          +
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d--------------~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~----------~  358 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYD--------------EALKLLQPLIAAQPDNPYYLELAGDILLEANKAK----------E  358 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccc--------------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH----------H
Confidence            778888888888888888765              9999999999999999998888888887777665          5


Q ss_pred             HHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHH
Q psy9159         142 FRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC  221 (259)
Q Consensus       142 a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~  221 (259)
                      |.+.+++++.++|+.+..+.++|..+++.                    |++.+|+..+++.+.-+| +++..|..||.+
T Consensus       359 A~e~~~kal~l~P~~~~l~~~~a~all~~--------------------g~~~eai~~L~~~~~~~p-~dp~~w~~LAqa  417 (484)
T COG4783         359 AIERLKKALALDPNSPLLQLNLAQALLKG--------------------GKPQEAIRILNRYLFNDP-EDPNGWDLLAQA  417 (484)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHhc--------------------CChHHHHHHHHHHhhcCC-CCchHHHHHHHH
Confidence            77899999999999999999999999885                    788999999999999999 779999999999


Q ss_pred             HHHhCCHHHHHHHHHHHhcCC
Q psy9159         222 YIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       222 ~~~~g~~~eA~~~~~kal~l~  242 (259)
                      |..+|+..+|...+-....+.
T Consensus       418 y~~~g~~~~a~~A~AE~~~~~  438 (484)
T COG4783         418 YAELGNRAEALLARAEGYALA  438 (484)
T ss_pred             HHHhCchHHHHHHHHHHHHhC
Confidence            999888777777766665544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.14  E-value=1.4e-09  Score=86.28  Aligned_cols=106  Identities=18%  Similarity=0.209  Sum_probs=91.9

Q ss_pred             CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC---hhHHHHHHHHHHHhhccchHHHHHHHHHhc
Q psy9159         110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD---FTLYSLKGRYQYEISKLSFFERKIAVLIVS  186 (259)
Q Consensus       110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~---~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~  186 (259)
                      |..+.+++.+|.++...|++.          .+..++++++++.|+.   +.+++.+|.++...                
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~----------------   85 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYA----------EALENYEEALKLEEDPNDRSYILYNMGIIYASN----------------   85 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc----------------
Confidence            456666788888888888887          5678999999988774   46899999988875                


Q ss_pred             CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCC--------------HHHHHHHHHHHhcCCCCCc
Q psy9159         187 DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGE--------------YAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       187 ~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~--------------~~eA~~~~~kal~l~p~~~  246 (259)
                          |++++|+.++++++++.| ++...+..+|.++..+|+              +++|++.+++++.++|.+.
T Consensus        86 ----g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603         86 ----GEHDKALEYYHQALELNP-KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             ----CCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence                889999999999999999 778999999999999988              6889999999999999875

>KOG0624|consensus

Probab=99.13  E-value=1.7e-09  Score=92.00  Aligned_cols=163  Identities=20%  Similarity=0.180  Sum_probs=128.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcH
Q psy9159          60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCG  139 (259)
Q Consensus        60 ~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~  139 (259)
                      .+|.+++-++-+|..++..|++.              .|+..|..|++.||++..+++..|-++..+|...         
T Consensus        33 ~~~advekhlElGk~lla~~Q~s--------------DALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk---------   89 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLS--------------DALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSK---------   89 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHH--------------HHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCc---------
Confidence            35677888888999988888765              9999999999999999999999999998888654         


Q ss_pred             HHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHH-----------------------------HHhcCCCC
Q psy9159         140 VVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAV-----------------------------LIVSDLDE  190 (259)
Q Consensus       140 ~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~  190 (259)
                       -+...+.+.|++.|+...+-...|.+++++|.++..+.-+..                             .+......
T Consensus        90 -~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~  168 (504)
T KOG0624|consen   90 -AALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGS  168 (504)
T ss_pred             -cchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence             346778888899998888888888888887765432211111                             11111235


Q ss_pred             CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      |+...||....+.+++.| =....+..++.||...|+...||..++.+-.+..+|.|
T Consensus       169 GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe  224 (504)
T KOG0624|consen  169 GDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE  224 (504)
T ss_pred             CchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH
Confidence            889999999999999998 44666888899999999999999999999888877664

>KOG1129|consensus

Probab=99.13  E-value=2e-09  Score=91.05  Aligned_cols=185  Identities=10%  Similarity=0.022  Sum_probs=142.3

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI  121 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~  121 (259)
                      .- |-+.+|...++..++..|. ++.+..|+++|....+..              .|+..+.+.+..-|.+.......+.
T Consensus       235 rL-gm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~--------------~AL~~~~~gld~fP~~VT~l~g~AR  298 (478)
T KOG1129|consen  235 RL-GMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPE--------------RALLVIGEGLDSFPFDVTYLLGQAR  298 (478)
T ss_pred             Hh-cChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHH--------------HHHHHHhhhhhcCCchhhhhhhhHH
Confidence            45 9999999999999998775 889999999999988775              9999999999999999887777777


Q ss_pred             HHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc---hHHHHHHH------HHhc-----C
Q psy9159         122 CVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS---FFERKIAV------LIVS-----D  187 (259)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~---~~~~~~~~------~~~~-----~  187 (259)
                      ++..+++.+          ++.+.|+.+++++|+|.++..-+|.-|+--+.-+   .+.|.+-+      .+|.     +
T Consensus       299 i~eam~~~~----------~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC  368 (478)
T KOG1129|consen  299 IHEAMEQQE----------DALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCC  368 (478)
T ss_pred             HHHHHHhHH----------HHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence            777666665          5779999999999999988766665444322211   12222221      1111     1


Q ss_pred             CCCCcHHHHHHHHHHHHhhC--CCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhhhh
Q psy9159         188 LDEPTAEDAIANCLKAEELA--PAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLSTTY  255 (259)
Q Consensus       188 ~~~g~~~eAi~~~~kAi~l~--P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~~~  255 (259)
                      ...++++-++.+|++|++..  |+.-.++|++||.+....|++.-|.++|+-++..+|++.   +.++|.
T Consensus       369 ~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~---ealnNL  435 (478)
T KOG1129|consen  369 LYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG---EALNNL  435 (478)
T ss_pred             HhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH---HHHHhH
Confidence            33588999999999999874  534567899999999999999999999999999987766   445554

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=99.13  E-value=3e-09  Score=83.07  Aligned_cols=116  Identities=18%  Similarity=0.095  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q psy9159          47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGAN  126 (259)
Q Consensus        47 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~  126 (259)
                      |+.|.+.++.....+|.+++.+++=|.++..+.+..    +..+....+++|+.-+++||.++|+..++++.+|.++...
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk----~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~   82 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFK----QGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL   82 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhcc----CcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999998874    3346778999999999999999999999999999999988


Q ss_pred             hchhhHH-HHHhcHHHHHHHHHHHHccCCCChhHHHHHHHH
Q psy9159         127 GQFQSLK-EKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY  166 (259)
Q Consensus       127 ~~~~~~~-~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~  166 (259)
                      +....-. +.-....+|..+|++|...+|+|..+.-.|...
T Consensus        83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            8654333 222335578899999999999999888877753

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.12  E-value=1.6e-09  Score=74.84  Aligned_cols=98  Identities=27%  Similarity=0.368  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHH
Q psy9159          67 VLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQM  146 (259)
Q Consensus        67 ~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~  146 (259)
                      +++.+|.++...|++.              +|+..++++++..|+++.++..+|.++...+++.          .+.+.+
T Consensus         2 ~~~~~a~~~~~~~~~~--------------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~a~~~~   57 (100)
T cd00189           2 ALLNLGNLYYKLGDYD--------------EALEYYEKALELDPDNADAYYNLAAAYYKLGKYE----------EALEDY   57 (100)
T ss_pred             HHHHHHHHHHHHhcHH--------------HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence            5778888888888765              9999999999999999999999999998887776          567889


Q ss_pred             HHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC
Q psy9159         147 NKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP  208 (259)
Q Consensus       147 ~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P  208 (259)
                      ++++.+.|.+..++..+|.++...                    |++++|..++.++++.+|
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          58 EKALELDPDNAKAYYNLGLAYYKL--------------------GKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHhCCCcchhHHHHHHHHHHHH--------------------HhHHHHHHHHHHHHccCC
Confidence            999999999999999999988875                    779999999999999988

>KOG1840|consensus

Probab=99.12  E-value=1.6e-09  Score=98.70  Aligned_cols=170  Identities=16%  Similarity=0.073  Sum_probs=116.0

Q ss_pred             CCcCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHH-HhCCCC
Q psy9159          42 GKKDDKAKAYNLTMELNNK--------QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM-ELAPNN  112 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal-~~~P~~  112 (259)
                      .. |+|++|+..+++++..        .|.=....-.+|.+|..++++.       +....+.+|+...+... .-+|.-
T Consensus       211 ~~-g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~-------eAv~ly~~AL~i~e~~~G~~h~~v  282 (508)
T KOG1840|consen  211 VQ-GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYD-------EAVNLYEEALTIREEVFGEDHPAV  282 (508)
T ss_pred             Hh-ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHH-------HHHHHHHHHHHHHHHhcCCCCHHH
Confidence            55 9999999999999997        5554444445888888888875       33334444444444333 234556


Q ss_pred             hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc-cCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCC
Q psy9159         113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ-MAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEP  191 (259)
Q Consensus       113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~-l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g  191 (259)
                      +.++.++|.++...|++..+..-.   ..|.+.+++.+- ..|.-+..+..++.++..+                    +
T Consensus       283 a~~l~nLa~ly~~~GKf~EA~~~~---e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~--------------------~  339 (508)
T KOG1840|consen  283 AATLNNLAVLYYKQGKFAEAEEYC---ERALEIYEKLLGASHPEVAAQLSELAAILQSM--------------------N  339 (508)
T ss_pred             HHHHHHHHHHHhccCChHHHHHHH---HHHHHHHHHhhccChHHHHHHHHHHHHHHHHh--------------------c
Confidence            667888999999999888543222   233444444111 1222334455555555543                    7


Q ss_pred             cHHHHHHHHHHHHhhC-----CCCc---HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159         192 TAEDAIANCLKAEELA-----PAPW---KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV  243 (259)
Q Consensus       192 ~~~eAi~~~~kAi~l~-----P~~~---~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p  243 (259)
                      ++++|+.++++++++-     + ++   ...+.+||.+|..+|++++|.+.+++|+++.-
T Consensus       340 ~~Eea~~l~q~al~i~~~~~g~-~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~  398 (508)
T KOG1840|consen  340 EYEEAKKLLQKALKIYLDAPGE-DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR  398 (508)
T ss_pred             chhHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            8999999999999862     3 23   35689999999999999999999999998763

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.12  E-value=2.8e-09  Score=78.47  Aligned_cols=105  Identities=17%  Similarity=0.147  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhchhhHHHHHhcHHH
Q psy9159          65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN---SNTQKWYGICVGANGQFQSLKEKIKCGVV  141 (259)
Q Consensus        65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~---~~~~~~la~~~~~~~~~~~~~~~~~~~~~  141 (259)
                      +++++.+|..+...|++.              +|+..+++++...|++   +.+++.+|.++...+++.          .
T Consensus         2 ~~~~~~~~~~~~~~~~~~--------------~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~   57 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYA--------------DAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYA----------D   57 (119)
T ss_pred             cHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHH----------H
Confidence            577889999999988875              9999999999999987   568889999999999887          4


Q ss_pred             HHHHHHHHHccCCCC---hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHh
Q psy9159         142 FRDQMNKAIQMAPKD---FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKEN  214 (259)
Q Consensus       142 a~~~~~kAl~l~P~~---~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~  214 (259)
                      +...+++++..+|++   +.+++.+|.++...                    |++++|+.++.++++..| ++..+
T Consensus        58 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--------------------~~~~~A~~~~~~~~~~~p-~~~~~  112 (119)
T TIGR02795        58 AAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL--------------------GDKEKAKATLQQVIKRYP-GSSAA  112 (119)
T ss_pred             HHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh--------------------CChHHHHHHHHHHHHHCc-CChhH
Confidence            678999999999986   57899999988774                    889999999999999999 55543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.10  E-value=1.2e-08  Score=93.78  Aligned_cols=194  Identities=15%  Similarity=0.074  Sum_probs=126.8

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP  110 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P  110 (259)
                      ++-++..+.  .. |++++|++.+++....-++...++-..|.++..+|+..              +|...++..|..+|
T Consensus         7 lLY~~~il~--e~-g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~--------------eA~~~y~~Li~rNP   69 (517)
T PF12569_consen    7 LLYKNSILE--EA-GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKE--------------EAEKIYRELIDRNP   69 (517)
T ss_pred             HHHHHHHHH--HC-CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHCC
Confidence            344554555  56 99999999999999989999999999999999999875              99999999999999


Q ss_pred             CChHHHHHHHHHHHHhhchh-----hHHHHHhc--------------------HH----HHHHHHHHHHcc---------
Q psy9159         111 NNSNTQKWYGICVGANGQFQ-----SLKEKIKC--------------------GV----VFRDQMNKAIQM---------  152 (259)
Q Consensus       111 ~~~~~~~~la~~~~~~~~~~-----~~~~~~~~--------------------~~----~a~~~~~kAl~l---------  152 (259)
                      +|...+..+..+++......     .....+..                    ..    .+..++...|..         
T Consensus        70 dn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~l  149 (517)
T PF12569_consen   70 DNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNL  149 (517)
T ss_pred             CcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            99999888888874433111     00000000                    00    011111111111         


Q ss_pred             -----CCCChhHHHHHHHHHHHhh----c--------------cchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC
Q psy9159         153 -----APKDFTLYSLKGRYQYEIS----K--------------LSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA  209 (259)
Q Consensus       153 -----~P~~~~~~~~lG~~~~~~~----~--------------~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~  209 (259)
                           +|.-..+...+..-+....    .              +-|..-.+++.+.   ..|++++|+++.++||+.+| 
T Consensus       150 k~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd---~~g~~~~Al~~Id~aI~htP-  225 (517)
T PF12569_consen  150 KPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD---YLGDYEKALEYIDKAIEHTP-  225 (517)
T ss_pred             HHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhcCC-
Confidence                 1111111111111111100    0              0011111111110   14999999999999999999 


Q ss_pred             CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159         210 PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       210 ~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~  245 (259)
                      ..++.|+..|.+|...|++++|.++++.|.++|+.|
T Consensus       226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D  261 (517)
T PF12569_consen  226 TLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD  261 (517)
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence            679999999999999999999999999999999543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.09  E-value=2.2e-09  Score=84.80  Aligned_cols=121  Identities=13%  Similarity=0.098  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC---hhHHHHHHHHHHHh
Q psy9159          96 LQGIEYAKKAMELAPNN--SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD---FTLYSLKGRYQYEI  170 (259)
Q Consensus        96 ~~A~~~~~kal~~~P~~--~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~---~~~~~~lG~~~~~~  170 (259)
                      ..+...+.+.++.++.+  ..++..+|.++...+++.          .+...+++++.+.|++   +.+|..+|.++...
T Consensus        16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~----------~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~   85 (168)
T CHL00033         16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYA----------EALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN   85 (168)
T ss_pred             ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhccccchhhHHHHHHHHHHHHHc
Confidence            35555555555666666  455677788888888877          5678899999998764   35899999998874


Q ss_pred             hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHH-------HhCCHH-------HHHHHHH
Q psy9159         171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYI-------EAGEYA-------KAVQWLD  236 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~-------~~g~~~-------eA~~~~~  236 (259)
                                          |++++|+.+|++|+.++| .+...+.++|.++.       .+|+++       +|+..++
T Consensus        86 --------------------g~~~eA~~~~~~Al~~~~-~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  144 (168)
T CHL00033         86 --------------------GEHTKALEYYFQALERNP-FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK  144 (168)
T ss_pred             --------------------CCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence                                889999999999999999 77888999999999       777766       6677777


Q ss_pred             HHhcCCCCCcc
Q psy9159         237 KAKAIPVVSYE  247 (259)
Q Consensus       237 kal~l~p~~~~  247 (259)
                      +++..+|.+..
T Consensus       145 ~a~~~~p~~~~  155 (168)
T CHL00033        145 QAIALAPGNYI  155 (168)
T ss_pred             HHHHhCcccHH
Confidence            88888887654

>KOG1127|consensus

Probab=99.08  E-value=3e-09  Score=100.66  Aligned_cols=162  Identities=17%  Similarity=0.081  Sum_probs=136.0

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      .+-..|+..+-+++..+|.-..++..||.+|...-+              ...|...|.+|.++||++++++...+-.+.
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~D--------------m~RA~kCf~KAFeLDatdaeaaaa~adtya  537 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDD--------------MKRAKKCFDKAFELDATDAEAAAASADTYA  537 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcCCchhhhhHHHHHHHhh
Confidence            568889999999999999999999888888886553              359999999999999999999998888888


Q ss_pred             HhhchhhHHHH--------------------------HhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHH
Q psy9159         125 ANGQFQSLKEK--------------------------IKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFER  178 (259)
Q Consensus       125 ~~~~~~~~~~~--------------------------~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~  178 (259)
                      ...+.+.+..-                          ..+.-.+...++.|++.+|++.+.|..+|..|.+.        
T Consensus       538 e~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~s--------  609 (1238)
T KOG1127|consen  538 EESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPES--------  609 (1238)
T ss_pred             ccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhc--------
Confidence            77766543210                          01112456789999999999999999999999875        


Q ss_pred             HHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         179 KIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       179 ~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                                  |+|.-|++.|.||..++| ....+.+-.|.....+|++.+|+..+.+.+.-
T Consensus       610 ------------Gry~~AlKvF~kAs~LrP-~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~  659 (1238)
T KOG1127|consen  610 ------------GRYSHALKVFTKASLLRP-LSKYGRFKEAVMECDNGKYKEALDALGLIIYA  659 (1238)
T ss_pred             ------------CceehHHHhhhhhHhcCc-HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence                        889999999999999999 66777888999999999999999999887653

>KOG0495|consensus

Probab=99.07  E-value=2.6e-08  Score=91.01  Aligned_cols=151  Identities=13%  Similarity=-0.007  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHH-----------------------HhcHHHHHHHHHHHHc
Q psy9159          95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEK-----------------------IKCGVVFRDQMNKAIQ  151 (259)
Q Consensus        95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~-----------------------~~~~~~a~~~~~kAl~  151 (259)
                      ...|+..+.+|++.+|++-++|+.--.+.+...+++.+...                       .++.+++++.++++|+
T Consensus       600 v~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk  679 (913)
T KOG0495|consen  600 VPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK  679 (913)
T ss_pred             cHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence            45899999999999999888876555555555555443322                       2334567889999999


Q ss_pred             cCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC---C-----------CCcHHHHHHHHHHHHhhCCCCcHHhHHH
Q psy9159         152 MAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL---D-----------EPTAEDAIANCLKAEELAPAPWKENQLL  217 (259)
Q Consensus       152 l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~g~~~eAi~~~~kAi~l~P~~~~~~~~~  217 (259)
                      ..|+.+..|.++|.++.++++++....+.-.-+...|   |           .|..-.|...++++.--|| .+..-|+.
T Consensus       680 ~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle  758 (913)
T KOG0495|consen  680 SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLE  758 (913)
T ss_pred             hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHH
Confidence            9999999999999999888665433332221111111   1           3667777788888877788 66666666


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         218 IAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       218 la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      .-..-...|+.+.|...+.+|++--|.+.
T Consensus       759 ~Ir~ElR~gn~~~a~~lmakALQecp~sg  787 (913)
T KOG0495|consen  759 SIRMELRAGNKEQAELLMAKALQECPSSG  787 (913)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCccc
Confidence            66666677888888888888877766654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.05  E-value=8e-10  Score=73.03  Aligned_cols=64  Identities=20%  Similarity=0.330  Sum_probs=57.2

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      ..+..++  .. |++++|+..|+++++.+|+++++++.+|.++...|++.              +|+.+++++++++|++
T Consensus         2 ~~a~~~~--~~-g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~--------------~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALY--QQ-GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYD--------------EALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHH--HC-THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HH--------------HHHHHHHHHHHHSTT-
T ss_pred             hHHHHHH--Hc-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHCcCC
Confidence            4566677  67 99999999999999999999999999999999999876              9999999999999998


Q ss_pred             h
Q psy9159         113 S  113 (259)
Q Consensus       113 ~  113 (259)
                      |
T Consensus        65 p   65 (65)
T PF13432_consen   65 P   65 (65)
T ss_dssp             H
T ss_pred             C
Confidence            6

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.05  E-value=6.6e-08  Score=78.84  Aligned_cols=181  Identities=18%  Similarity=0.113  Sum_probs=122.1

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHH
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND---PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKA  105 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~ka  105 (259)
                      +..+..+...+  .. |+|.+|+..|++++...|.+   +++.+.+|.+++..|++.              +|+..+++-
T Consensus         6 ~~lY~~a~~~~--~~-g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~--------------~A~~~~~~f   68 (203)
T PF13525_consen    6 EALYQKALEAL--QQ-GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYE--------------EAIAAYERF   68 (203)
T ss_dssp             HHHHHHHHHHH--HC-T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HH--------------HHHHHHHHH
T ss_pred             HHHHHHHHHHH--HC-CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHH
Confidence            45678888888  67 99999999999999987754   788999999999999875              999999999


Q ss_pred             HHhCCCChH---HHHHHHHHHHHhhchh-hHHHHHhcHHHHHHHHHHHHccCCCChhHHHH---HHHHHHHhhccchHHH
Q psy9159         106 MELAPNNSN---TQKWYGICVGANGQFQ-SLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSL---KGRYQYEISKLSFFER  178 (259)
Q Consensus       106 l~~~P~~~~---~~~~la~~~~~~~~~~-~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~---lG~~~~~~~~~~~~~~  178 (259)
                      +...|+++.   ++++.|.+......-. ...........+...+++.++..|++.-+--.   +..+-..+...   +-
T Consensus        69 i~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~---e~  145 (203)
T PF13525_consen   69 IKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH---EL  145 (203)
T ss_dssp             HHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH---HH
T ss_pred             HHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH---HH
Confidence            999999875   5667777655442111 00122233456788999999999998855422   22222111111   11


Q ss_pred             HHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcH---HhHHHHHHHHHHhCCHHHHHH
Q psy9159         179 KIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWK---ENQLLIAKCYIEAGEYAKAVQ  233 (259)
Q Consensus       179 ~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~---~~~~~la~~~~~~g~~~eA~~  233 (259)
                      .++..++.   .|.|..|+..++.+++.-| +..   .+...++.+|..+|..+.|..
T Consensus       146 ~ia~~Y~~---~~~y~aA~~r~~~v~~~yp-~t~~~~~al~~l~~~y~~l~~~~~a~~  199 (203)
T PF13525_consen  146 YIARFYYK---RGKYKAAIIRFQYVIENYP-DTPAAEEALARLAEAYYKLGLKQAADT  199 (203)
T ss_dssp             HHHHHHHC---TT-HHHHHHHHHHHHHHST-TSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHH---cccHHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHhCChHHHHH
Confidence            11222222   5899999999999999999 554   457889999999999885543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.03  E-value=7.9e-10  Score=77.07  Aligned_cols=76  Identities=22%  Similarity=0.347  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHccCCC--ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHH
Q psy9159         141 VFRDQMNKAIQMAPK--DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI  218 (259)
Q Consensus       141 ~a~~~~~kAl~l~P~--~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~l  218 (259)
                      .|+..++++++.+|+  +..+++.+|.++++.                    |+|++|+..+++ .+.+| .+...++.+
T Consensus         7 ~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~--------------------~~y~~A~~~~~~-~~~~~-~~~~~~~l~   64 (84)
T PF12895_consen    7 NAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ--------------------GKYEEAIELLQK-LKLDP-SNPDIHYLL   64 (84)
T ss_dssp             HHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT--------------------THHHHHHHHHHC-HTHHH-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC--------------------CCHHHHHHHHHH-hCCCC-CCHHHHHHH
Confidence            678899999999996  567888899999985                    889999999999 88888 677888888


Q ss_pred             HHHHHHhCCHHHHHHHHHHH
Q psy9159         219 AKCYIEAGEYAKAVQWLDKA  238 (259)
Q Consensus       219 a~~~~~~g~~~eA~~~~~ka  238 (259)
                      |.|+..+|++++|++.|+++
T Consensus        65 a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   65 ARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHhcC
Confidence            99999999999999999986

>KOG1128|consensus

Probab=99.03  E-value=3.1e-09  Score=97.85  Aligned_cols=170  Identities=11%  Similarity=0.065  Sum_probs=104.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc------cCcHH--------HHHHHHHHHHHHHHHHHHhCC
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR------ENDKE--------ASEKYILQGIEYAKKAMELAP  110 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~------~~~~~--------~~~~~~~~A~~~~~kal~~~P  110 (259)
                      |+..+|-....+-++ .|+++-.|..+|.+..+..-+++.      .+...        .+.+.++++...++.+++++|
T Consensus       438 g~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np  516 (777)
T KOG1128|consen  438 GQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINP  516 (777)
T ss_pred             cccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence            677777777777777 566666666666655432221110      00000        112456677777777777777


Q ss_pred             CChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCC
Q psy9159         111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDE  190 (259)
Q Consensus       111 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (259)
                      -....|+.+|-+...++++.          .+.++|.+++.++|++..+|.++...|..+                    
T Consensus       517 lq~~~wf~~G~~ALqlek~q----------~av~aF~rcvtL~Pd~~eaWnNls~ayi~~--------------------  566 (777)
T KOG1128|consen  517 LQLGTWFGLGCAALQLEKEQ----------AAVKAFHRCVTLEPDNAEAWNNLSTAYIRL--------------------  566 (777)
T ss_pred             cchhHHHhccHHHHHHhhhH----------HHHHHHHHHhhcCCCchhhhhhhhHHHHHH--------------------
Confidence            77777777766666665554          344666777777777777777777666654                    


Q ss_pred             CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      ++-.+|...+++|++.+- ++..+|-|.-.+....|.+++|++.|.+.+.+.....
T Consensus       567 ~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  567 KKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             hhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence            445667777777777764 5556666666666677777777777777766655544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.01  E-value=7.8e-09  Score=99.44  Aligned_cols=149  Identities=11%  Similarity=0.001  Sum_probs=123.3

Q ss_pred             hhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHH--
Q psy9159          58 NNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEK--  135 (259)
Q Consensus        58 ~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~--  135 (259)
                      ..-+|.+.+++..|..+|...+++.              +|+..++.+++..|+...+++.+|.++...++...+..-  
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~~~~~d--------------eai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~   89 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKSENLTD--------------EAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNL   89 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCHH--------------HHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhh
Confidence            4567999999999999998888875              999999999999999999999999988777765432110  


Q ss_pred             ---H--hcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCC
Q psy9159         136 ---I--KCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAP  210 (259)
Q Consensus       136 ---~--~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~  210 (259)
                         .  ..-..+.+++-..+...|.+-.+++.||.+|-++                    |+.++|+..|+++++++| +
T Consensus        90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~--------------------g~~~ka~~~yer~L~~D~-~  148 (906)
T PRK14720         90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKL--------------------NENKKLKGVWERLVKADR-D  148 (906)
T ss_pred             hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHc--------------------CChHHHHHHHHHHHhcCc-c
Confidence               0  0001344566666666777778999999988665                    889999999999999999 8


Q ss_pred             cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         211 WKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       211 ~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                      ++.+..++|..|... ++++|++++.+|+...
T Consensus       149 n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        149 NPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            899999999999999 9999999999999864

>KOG1156|consensus

Probab=98.96  E-value=4e-08  Score=89.60  Aligned_cols=192  Identities=11%  Similarity=0.017  Sum_probs=130.6

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA  109 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~  109 (259)
                      .+-..+-.+.  .- |+-++|.+..+.++..++.+.-.|+-+|.++..-..+              ++|+..|+.|+.++
T Consensus        43 slAmkGL~L~--~l-g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y--------------~eaiKcy~nAl~~~  105 (700)
T KOG1156|consen   43 SLAMKGLTLN--CL-GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY--------------DEAIKCYRNALKIE  105 (700)
T ss_pred             hHHhccchhh--cc-cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH--------------HHHHHHHHHHHhcC
Confidence            3344444555  44 9999999999999999999999999999998876665              49999999999999


Q ss_pred             CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHH-------
Q psy9159         110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAV-------  182 (259)
Q Consensus       110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~-------  182 (259)
                      |+|-.++.-++.+..+++++.+.          ...-.+.++++|.+...|...++.++-.++.......+..       
T Consensus       106 ~dN~qilrDlslLQ~QmRd~~~~----------~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~  175 (700)
T KOG1156|consen  106 KDNLQILRDLSLLQIQMRDYEGY----------LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT  175 (700)
T ss_pred             CCcHHHHHHHHHHHHHHHhhhhH----------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999998754          2344666888999888888777766555443211111100       


Q ss_pred             ------------HHh-c--CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         183 ------------LIV-S--DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       183 ------------~~~-~--~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                                  .++ +  ....|.+++|.++..+--.--- +.....-..|..++.+++.++|+..|+..+..+|+|-+
T Consensus       176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~  254 (700)
T KOG1156|consen  176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD  254 (700)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence                        000 0  0013555555555443222111 11222344667777777777777777777777777765


Q ss_pred             ch
Q psy9159         248 SH  249 (259)
Q Consensus       248 ~~  249 (259)
                      .-
T Consensus       255 Yy  256 (700)
T KOG1156|consen  255 YY  256 (700)
T ss_pred             HH
Confidence            43

>KOG4648|consensus

Probab=98.94  E-value=3.6e-09  Score=90.11  Aligned_cols=201  Identities=11%  Similarity=-0.003  Sum_probs=135.8

Q ss_pred             hhccCCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHH
Q psy9159          25 FAVNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKK  104 (259)
Q Consensus        25 ~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~k  104 (259)
                      .....++-++++.+|  .+ |+|++||+.|.+++..+|.||-.+.+.|.+|+.+..+.              .|..-|..
T Consensus        94 L~~~SEiKE~GN~yF--KQ-gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA--------------~AE~DC~~  156 (536)
T KOG4648|consen   94 LKKASEIKERGNTYF--KQ-GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFA--------------QAEEDCEA  156 (536)
T ss_pred             HHhhHHHHHhhhhhh--hc-cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHH--------------HHHHhHHH
Confidence            334456788999999  77 99999999999999999999999999999999988765              78888888


Q ss_pred             HHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh-hc-----cch---
Q psy9159         105 AMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI-SK-----LSF---  175 (259)
Q Consensus       105 al~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~-~~-----~~~---  175 (259)
                      |+++|.....+|...+.+...+|+..          +|++.++.+|+|.|++.+.--.++++-.-. .+     .+.   
T Consensus       157 AiaLd~~Y~KAYSRR~~AR~~Lg~~~----------EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~  226 (536)
T KOG4648|consen  157 AIALDKLYVKAYSRRMQARESLGNNM----------EAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTP  226 (536)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHhhHH----------HHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCc
Confidence            88888766666555555444444433          567788888888888766554444332100 00     000   


Q ss_pred             HHHHHHHHH----------------------------hcCC-----------CCCcHHHHHHHHHHHHhhCCCCcHHhHH
Q psy9159         176 FERKIAVLI----------------------------VSDL-----------DEPTAEDAIANCLKAEELAPAPWKENQL  216 (259)
Q Consensus       176 ~~~~~~~~~----------------------------~~~~-----------~~g~~~eAi~~~~kAi~l~P~~~~~~~~  216 (259)
                      ..+..++.+                            .+..           ..-++++|+....+++-++| .......
T Consensus       227 A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~-s~~~~~s  305 (536)
T KOG4648|consen  227 ARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKP-TPMPDTS  305 (536)
T ss_pred             cccchhhhccccCcchhhhhhhccccceeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCC-CcCcccC
Confidence            000000000                            0000           02456777777778888877 4555566


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhh
Q psy9159         217 LIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLST  253 (259)
Q Consensus       217 ~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~  253 (259)
                      ..+.+---+|...++...++.++.+.|.+...+..++
T Consensus       306 ~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~s  342 (536)
T KOG4648|consen  306 GPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETET  342 (536)
T ss_pred             CCchhHHHHhhhhhcCcchhheeeeccccccchhhhh
Confidence            6677777778888888888888888887766555443

>KOG1840|consensus

Probab=98.94  E-value=6e-08  Score=88.52  Aligned_cols=168  Identities=17%  Similarity=0.107  Sum_probs=115.4

Q ss_pred             cCCHHHHHHHHHHHhh--------cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC-CCChH
Q psy9159          44 KDDKAKAYNLTMELNN--------KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA-PNNSN  114 (259)
Q Consensus        44 ~~~~~~A~~~~~~~~~--------~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~-P~~~~  114 (259)
                      .+++.+|+.+|++++.        .+|.-+.++.+||.+|...|++.       +.....+.|++++++..... |+-+.
T Consensus       254 ~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~-------EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840|consen  254 LGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFA-------EAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             hccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChH-------HHHHHHHHHHHHHHHhhccChHHHHH
Confidence            3999999999999987        45667788999999999999876       34444555555555522222 22233


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHcc-CCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcH
Q psy9159         115 TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM-APKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTA  193 (259)
Q Consensus       115 ~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l-~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  193 (259)
                      .+..++.++...+.++.+.....   .+.+.+.++... +|.-+..+.+||.+|+.+                    |+|
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q---~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~--------------------gk~  383 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQ---KALKIYLDAPGEDNVNLAKIYANLAELYLKM--------------------GKY  383 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHH---HHHHHHHhhccccchHHHHHHHHHHHHHHHh--------------------cch
Confidence            34445566666666654332222   222333333222 235567889999998886                    889


Q ss_pred             HHHHHHHHHHHhhC--------CCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         194 EDAIANCLKAEELA--------PAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       194 ~eAi~~~~kAi~l~--------P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                      ++|.+.|++|+++.        + .......+||..|...+++.+|.+.|.+++.+.
T Consensus       384 ~ea~~~~k~ai~~~~~~~~~~~~-~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  384 KEAEELYKKAIQILRELLGKKDY-GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             hHHHHHHHHHHHHHHhcccCcCh-hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            99999999999975        2 223457889999999999999999999998754

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.91  E-value=1.2e-06  Score=72.39  Aligned_cols=211  Identities=18%  Similarity=0.066  Sum_probs=136.0

Q ss_pred             HHhhhhhhhhhhcc-------CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhhchhcc
Q psy9159          15 FVQFGECAELFAVN-------NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND---PDVLYRLAKACHCLYDIKRR   84 (259)
Q Consensus        15 ~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~~   84 (259)
                      +.....|.......       ++++.++...+  .. |++++|+..|+.+...+|.+   ..+...++.+++..+++.  
T Consensus        14 ~~~~~~cs~~~~~~~~~~~p~~~LY~~g~~~L--~~-gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~--   88 (254)
T COG4105          14 LVASTGCSGDKDKNGVYNLPASELYNEGLTEL--QK-GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYD--   88 (254)
T ss_pred             HHHhccCCcchhhccccCCCHHHHHHHHHHHH--hc-CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHH--
Confidence            33345565554431       34577787777  56 99999999999999987755   577888888888888765  


Q ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHH
Q psy9159          85 ENDKEASEKYILQGIEYAKKAMELAPNNSNTQKW-YGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLK  163 (259)
Q Consensus        85 ~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~-la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~l  163 (259)
                                  +|+...++-+.+.|+++++-+. +=..++..-..............+...+++.|+--|+..-+--..
T Consensus        89 ------------~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~  156 (254)
T COG4105          89 ------------LALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAK  156 (254)
T ss_pred             ------------HHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHH
Confidence                        9999999999999999987322 212222222222111222233467788899999999976433222


Q ss_pred             HHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcH---HhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         164 GRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWK---ENQLLIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       164 G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~---~~~~~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                      .++-+-...+...+..++.-+.-   .|.+.-|+.-++..++.-| +..   +++..+..+|..+|-.++|.+.-+-.-.
T Consensus       157 ~~i~~~~d~LA~~Em~IaryY~k---r~~~~AA~nR~~~v~e~y~-~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         157 ARIVKLNDALAGHEMAIARYYLK---RGAYVAAINRFEEVLENYP-DTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---hcChHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            22111111111111122211111   3789999999999999876 433   5678888999999999999887555444


Q ss_pred             CCCCCc
Q psy9159         241 IPVVSY  246 (259)
Q Consensus       241 l~p~~~  246 (259)
                      -.|+++
T Consensus       233 N~p~s~  238 (254)
T COG4105         233 NYPDSQ  238 (254)
T ss_pred             cCCCCc
Confidence            455553

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.91  E-value=5.7e-09  Score=92.57  Aligned_cols=70  Identities=24%  Similarity=0.072  Sum_probs=65.0

Q ss_pred             ccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHH---hHHHHHHHHHHhCC
Q psy9159         151 QMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKE---NQLLIAKCYIEAGE  227 (259)
Q Consensus       151 ~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~---~~~~la~~~~~~g~  227 (259)
                      .-+|+++.+|+++|..|+..                    |+|++|+.+|++|++++| ++..   +|+++|.||..+|+
T Consensus        69 ~~dP~~a~a~~NLG~AL~~l--------------------GryeEAIa~f~rALeL~P-d~aeA~~A~yNLAcaya~LGr  127 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSK--------------------GRVKDALAQFETALELNP-NPDEAQAAYYNKACCHAYREE  127 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHhhCC-CchHHHHHHHHHHHHHHHcCC
Confidence            37999999999999999885                    889999999999999999 6664   49999999999999


Q ss_pred             HHHHHHHHHHHhcC
Q psy9159         228 YAKAVQWLDKAKAI  241 (259)
Q Consensus       228 ~~eA~~~~~kal~l  241 (259)
                      +++|++++++|+++
T Consensus       128 ~dEAla~LrrALel  141 (453)
T PLN03098        128 GKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999998

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.90  E-value=3.1e-08  Score=83.75  Aligned_cols=109  Identities=12%  Similarity=0.039  Sum_probs=89.3

Q ss_pred             HHHHHHHHHH-HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC---hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159         114 NTQKWYGICV-GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD---FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD  189 (259)
Q Consensus       114 ~~~~~la~~~-~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~---~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~  189 (259)
                      ..++..+..+ ...+++.          .+...|++.++..|++   +.+++++|.+|+..                   
T Consensus       143 ~~~Y~~A~~l~~~~~~y~----------~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~-------------------  193 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQD----------DAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNK-------------------  193 (263)
T ss_pred             HHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHc-------------------
Confidence            4455555544 2345555          5678899999999998   48999999999875                   


Q ss_pred             CCcHHHHHHHHHHHHhhCCCC--cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         190 EPTAEDAIANCLKAEELAPAP--WKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~--~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                       |++++|+.+|+++++..|++  .+.+++.+|.++..+|++++|++.|+++++..|++...+...
T Consensus       194 -g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~  257 (263)
T PRK10803        194 -GKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQ  257 (263)
T ss_pred             -CCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence             88999999999999998832  357799999999999999999999999999999987655543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.90  E-value=6.4e-08  Score=74.58  Aligned_cols=127  Identities=20%  Similarity=0.134  Sum_probs=101.8

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHH
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND---PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM  106 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal  106 (259)
                      ..+..+...+  .. ++...+...+++.++.+|++   +.+.+.+|.++...|++.              +|...+++++
T Consensus        13 ~~y~~~~~~~--~~-~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~--------------~A~~~l~~~~   75 (145)
T PF09976_consen   13 ALYEQALQAL--QA-GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYD--------------EAKAALEKAL   75 (145)
T ss_pred             HHHHHHHHHH--HC-CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHH
Confidence            4456666666  56 89999999999999999999   667777889998888765              9999999999


Q ss_pred             HhCCCC---hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHH
Q psy9159         107 ELAPNN---SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVL  183 (259)
Q Consensus       107 ~~~P~~---~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~  183 (259)
                      +..|+.   +.+...++.++...|++..          +...++. +.-.|-.+.++..+|.++...             
T Consensus        76 ~~~~d~~l~~~a~l~LA~~~~~~~~~d~----------Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~-------------  131 (145)
T PF09976_consen   76 ANAPDPELKPLARLRLARILLQQGQYDE----------ALATLQQ-IPDEAFKALAAELLGDIYLAQ-------------  131 (145)
T ss_pred             hhCCCHHHHHHHHHHHHHHHHHcCCHHH----------HHHHHHh-ccCcchHHHHHHHHHHHHHHC-------------
Confidence            988776   4567788999988888874          4455544 344555667889999999875             


Q ss_pred             HhcCCCCCcHHHHHHHHHHHH
Q psy9159         184 IVSDLDEPTAEDAIANCLKAE  204 (259)
Q Consensus       184 ~~~~~~~g~~~eAi~~~~kAi  204 (259)
                             |++++|+..|++|+
T Consensus       132 -------g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  132 -------GDYDEARAAYQKAL  145 (145)
T ss_pred             -------CCHHHHHHHHHHhC
Confidence                   88999999999985

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.89  E-value=4e-09  Score=73.44  Aligned_cols=79  Identities=24%  Similarity=0.320  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhh
Q psy9159          94 YILQGIEYAKKAMELAPN--NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEIS  171 (259)
Q Consensus        94 ~~~~A~~~~~kal~~~P~--~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~  171 (259)
                      .+++|+.+++++++.+|+  ++..++++|.++...|++.          +|...+++ ++.+|.++..++.+|++++++ 
T Consensus         4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~----------~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l-   71 (84)
T PF12895_consen    4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYE----------EAIELLQK-LKLDPSNPDIHYLLARCLLKL-   71 (84)
T ss_dssp             -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHH----------HHHHHHHC-HTHHHCHHHHHHHHHHHHHHT-
T ss_pred             cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHH----------HHHHHHHH-hCCCCCCHHHHHHHHHHHHHh-
Confidence            467999999999999996  4666777899999999987          45677788 899999999999999999986 


Q ss_pred             ccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159         172 KLSFFERKIAVLIVSDLDEPTAEDAIANCLKA  203 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA  203 (259)
                                         |++++|+++|++|
T Consensus        72 -------------------~~y~eAi~~l~~~   84 (84)
T PF12895_consen   72 -------------------GKYEEAIKALEKA   84 (84)
T ss_dssp             -------------------T-HHHHHHHHHHH
T ss_pred             -------------------CCHHHHHHHHhcC
Confidence                               8899999999986

>KOG0543|consensus

Probab=98.88  E-value=6.6e-08  Score=84.20  Aligned_cols=100  Identities=15%  Similarity=0.132  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcH
Q psy9159         114 NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTA  193 (259)
Q Consensus       114 ~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  193 (259)
                      .+|.+++.++..+..+.          .|+....++|.++|+|.-++|..|.++..+                    |.|
T Consensus       258 ~~~lNlA~c~lKl~~~~----------~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~--------------------~e~  307 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYK----------EAIESCNKVLELDPNNVKALYRRGQALLAL--------------------GEY  307 (397)
T ss_pred             HHhhHHHHHHHhhhhHH----------HHHHHHHHHHhcCCCchhHHHHHHHHHHhh--------------------ccH
Confidence            35677888887777765          567888999999999999999999999876                    779


Q ss_pred             HHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHH-HHHHHHHhcCCCC
Q psy9159         194 EDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKA-VQWLDKAKAIPVV  244 (259)
Q Consensus       194 ~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA-~~~~~kal~l~p~  244 (259)
                      +.|+..|++|++++| +|..+...|..|-.+..++.+. .+.|.+.+..-+.
T Consensus       308 ~~A~~df~ka~k~~P-~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~  358 (397)
T KOG0543|consen  308 DLARDDFQKALKLEP-SNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE  358 (397)
T ss_pred             HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            999999999999999 7899999999999888876655 8899998876653

>KOG2003|consensus

Probab=98.87  E-value=1.6e-08  Score=89.01  Aligned_cols=190  Identities=14%  Similarity=0.082  Sum_probs=101.4

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHH-HHHHHHHHHHHhhchh-cc---------------------cCcH
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPD-VLYRLAKACHCLYDIK-RR---------------------ENDK   88 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~g~~~-~~---------------------~~~~   88 (259)
                      +-.+..++  .+ |+++.|++.++-.-+.+....+ +-.+|...++..|... -+                     +++.
T Consensus       423 i~ka~~~l--k~-~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~  499 (840)
T KOG2003|consen  423 INKAGELL--KN-GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNI  499 (840)
T ss_pred             hhHHHHHH--hc-cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence            45677788  68 9999999999887776544332 3344555555444211 00                     0000


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHH
Q psy9159          89 EASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQY  168 (259)
Q Consensus        89 ~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~  168 (259)
                      .-..+.+++|.+.|++||.-+..-.+++++.|.....+|+.+          ++.+++-|.-.+--+++.+++.++.+|.
T Consensus       500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ld----------eald~f~klh~il~nn~evl~qianiye  569 (840)
T KOG2003|consen  500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLD----------EALDCFLKLHAILLNNAEVLVQIANIYE  569 (840)
T ss_pred             eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHH----------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            011223445555555555555545555555555444444443          2334444443344445555555555543


Q ss_pred             HhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         169 EISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                      .+                    .+...||+++.++.++-| ..+.+...||..|-..|+...|.+++=..-.--|-|-|.
T Consensus       570 ~l--------------------ed~aqaie~~~q~~slip-~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~  628 (840)
T KOG2003|consen  570 LL--------------------EDPAQAIELLMQANSLIP-NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIET  628 (840)
T ss_pred             Hh--------------------hCHHHHHHHHHHhcccCC-CCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHH
Confidence            33                    345566666666666666 345556666666666666666666666666666666665


Q ss_pred             hhhhhhh
Q psy9159         249 HDLSTTY  255 (259)
Q Consensus       249 ~~~~~~~  255 (259)
                      .+|+.-|
T Consensus       629 iewl~ay  635 (840)
T KOG2003|consen  629 IEWLAAY  635 (840)
T ss_pred             HHHHHHH
Confidence            5555433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.87  E-value=1.9e-07  Score=71.96  Aligned_cols=111  Identities=15%  Similarity=0.118  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC---hhHHHHHHHHHHHh
Q psy9159          97 QGIEYAKKAMELAPNN---SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD---FTLYSLKGRYQYEI  170 (259)
Q Consensus        97 ~A~~~~~kal~~~P~~---~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~---~~~~~~lG~~~~~~  170 (259)
                      .+...+++.++-.|+.   ..+...+|.++...|++.          .+...|++++...|+.   +.+...|+.++...
T Consensus        29 ~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~----------~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~   98 (145)
T PF09976_consen   29 KAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYD----------EAKAALEKALANAPDPELKPLARLRLARILLQQ   98 (145)
T ss_pred             HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc
Confidence            6677788999999998   555667788888888887          5678889999987765   35778888888764


Q ss_pred             hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159         171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK  239 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal  239 (259)
                                          |++++|+..++.. .-.| ..+.++..+|.+|...|++++|+..|++|+
T Consensus        99 --------------------~~~d~Al~~L~~~-~~~~-~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   99 --------------------GQYDEALATLQQI-PDEA-FKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             --------------------CCHHHHHHHHHhc-cCcc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence                                8899999999763 3334 456678889999999999999999999985

>PRK15331 chaperone protein SicA; Provisional

Probab=98.86  E-value=2.4e-08  Score=77.35  Aligned_cols=107  Identities=8%  Similarity=-0.117  Sum_probs=90.3

Q ss_pred             HHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHH
Q psy9159         104 KAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVL  183 (259)
Q Consensus       104 kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~  183 (259)
                      ....+.++.-+..+.+|.-+...|++.          +|...|.-...+||.++.+|..||.++..+             
T Consensus        28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~----------eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~-------------   84 (165)
T PRK15331         28 DVHGIPQDMMDGLYAHAYEFYNQGRLD----------EAETFFRFLCIYDFYNPDYTMGLAAVCQLK-------------   84 (165)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHH-------------
Confidence            344555666666677777777778776          456777777889999999999999988764             


Q ss_pred             HhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         184 IVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       184 ~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                             +.|++|+..|..|..+++ +++...++.|.||..+|+.++|+..|..+++.
T Consensus        85 -------k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331         85 -------KQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNER  134 (165)
T ss_pred             -------HHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence                   779999999999999999 67888999999999999999999999999983

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.85  E-value=4.5e-09  Score=69.93  Aligned_cols=61  Identities=28%  Similarity=0.396  Sum_probs=54.7

Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL  251 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~  251 (259)
                      .|++++|++.|+++++.+| ++..+++.+|.||...|++++|.+.+++++..+|+++.-..+
T Consensus         4 ~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l   64 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL   64 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            4899999999999999999 789999999999999999999999999999999987654433

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.85  E-value=2.4e-07  Score=77.62  Aligned_cols=159  Identities=16%  Similarity=0.131  Sum_probs=119.9

Q ss_pred             CCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHhhchhhHHHHHhcH
Q psy9159          63 NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQ---KWYGICVGANGQFQSLKEKIKCG  139 (259)
Q Consensus        63 ~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~---~~la~~~~~~~~~~~~~~~~~~~  139 (259)
                      .+++.++..|..+...|++.              +|++.+++.+...|+.+.+.   +++|.++...+++.         
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~--------------~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~---------   86 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWK--------------QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLP---------   86 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHH---------
Confidence            35666777778888878765              99999999999999998876   88999999998887         


Q ss_pred             HHHHHHHHHHHccCCCCh---hHHHHHHHHHHHhhccchHHHHHHHHHhcC----CCCCcHHHHHHHHHHHHhhCCCCcH
Q psy9159         140 VVFRDQMNKAIQMAPKDF---TLYSLKGRYQYEISKLSFFERKIAVLIVSD----LDEPTAEDAIANCLKAEELAPAPWK  212 (259)
Q Consensus       140 ~~a~~~~~kAl~l~P~~~---~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~eAi~~~~kAi~l~P~~~~  212 (259)
                       .|...+++.++++|+++   .+++.+|.++...+.- ++..     ....    ..+....+|+..|++.++.-| +..
T Consensus        87 -~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~-~~~~-----~~~~~~~~rD~~~~~~A~~~~~~li~~yP-~S~  158 (243)
T PRK10866         87 -LAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS-ALQG-----FFGVDRSDRDPQHARAAFRDFSKLVRGYP-NSQ  158 (243)
T ss_pred             -HHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh-hhhh-----ccCCCccccCHHHHHHHHHHHHHHHHHCc-CCh
Confidence             56789999999999987   4578888776444210 0000     0000    012335788999999999999 442


Q ss_pred             Hh-----------------HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         213 EN-----------------QLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       213 ~~-----------------~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                      .+                 -+..|..|.+.|++..|+.-++.+++--|+++...+.+
T Consensus       159 ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal  215 (243)
T PRK10866        159 YTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDAL  215 (243)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHH
Confidence            11                 25677889999999999999999999999988776654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.84  E-value=3.7e-07  Score=77.37  Aligned_cols=173  Identities=12%  Similarity=0.106  Sum_probs=137.1

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      +..+++.-.++. .+ .++++|++..++..+..|+.-.+  .+|..|+.+.+..       ...++.+.|+..+++|++.
T Consensus       141 ~~AlqqLl~IYQ-~t-reW~KAId~A~~L~k~~~q~~~~--eIAqfyCELAq~~-------~~~~~~d~A~~~l~kAlqa  209 (389)
T COG2956         141 EGALQQLLNIYQ-AT-REWEKAIDVAERLVKLGGQTYRV--EIAQFYCELAQQA-------LASSDVDRARELLKKALQA  209 (389)
T ss_pred             HHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHcCCccchh--HHHHHHHHHHHHH-------hhhhhHHHHHHHHHHHHhh
Confidence            445666666663 55 89999999999999988876554  5777777766533       3345567999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh-hHHHHHHHHHHHhhccchHHHHHHHHHhcC
Q psy9159         109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF-TLYSLKGRYQYEISKLSFFERKIAVLIVSD  187 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~-~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~  187 (259)
                      +|++..+-..+|.+....|++.          .+.+.++.+++.||... ++.-.|-.+|.++                 
T Consensus       210 ~~~cvRAsi~lG~v~~~~g~y~----------~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l-----------------  262 (389)
T COG2956         210 DKKCVRASIILGRVELAKGDYQ----------KAVEALERVLEQNPEYLSEVLEMLYECYAQL-----------------  262 (389)
T ss_pred             CccceehhhhhhHHHHhccchH----------HHHHHHHHHHHhChHHHHHHHHHHHHHHHHh-----------------
Confidence            9999999999999999999987          46788999999999854 5667777777664                 


Q ss_pred             CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         188 LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       188 ~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                         |+.++.+.++.++++..| . +.+-+.++..-....=.+.|..++.+-+...|+
T Consensus       263 ---g~~~~~~~fL~~~~~~~~-g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt  314 (389)
T COG2956         263 ---GKPAEGLNFLRRAMETNT-G-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPT  314 (389)
T ss_pred             ---CCHHHHHHHHHHHHHccC-C-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence               889999999999999988 3 566677887777777788888888887777765

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.84  E-value=7.8e-09  Score=68.76  Aligned_cols=65  Identities=17%  Similarity=0.240  Sum_probs=58.8

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI  121 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~  121 (259)
                      .. |++++|+..|++++..+|+++++++.+|.+|...|++.              +|...+++++..+|+++.++..++.
T Consensus         3 ~~-~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--------------~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    3 KQ-GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYD--------------EAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HT-THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HH--------------HHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hc-cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            45 99999999999999999999999999999999999875              9999999999999999887766554

...

>KOG1127|consensus

Probab=98.82  E-value=1.5e-07  Score=89.47  Aligned_cols=142  Identities=16%  Similarity=0.133  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhc
Q psy9159          93 KYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISK  172 (259)
Q Consensus        93 ~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~  172 (259)
                      +....|+..+-+++.++|..+.++..+|.++....+..          .|..+|.+|.++||+++.++-.....|.+..+
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~----------RA~kCf~KAFeLDatdaeaaaa~adtyae~~~  541 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMK----------RAKKCFDKAFELDATDAEAAAASADTYAEEST  541 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH----------HHHHHHHHHhcCCchhhhhHHHHHHHhhcccc
Confidence            34678999999999999999999999999987665332          57899999999999999999999888766544


Q ss_pred             cchHH----HHH---------HHHH-hc--CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHH
Q psy9159         173 LSFFE----RKI---------AVLI-VS--DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLD  236 (259)
Q Consensus       173 ~~~~~----~~~---------~~~~-~~--~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~  236 (259)
                      -+...    ++.         -.+. .|  .+..+++.+|+.+|+.|+..+| ...+.|..||.+|..-|++.-|++.|.
T Consensus       542 we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~  620 (1238)
T KOG1127|consen  542 WEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFT  620 (1238)
T ss_pred             HHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhh
Confidence            22111    000         0111 11  1346899999999999999999 668999999999999999999999999


Q ss_pred             HHhcCCCCC
Q psy9159         237 KAKAIPVVS  245 (259)
Q Consensus       237 kal~l~p~~  245 (259)
                      ||..++|.+
T Consensus       621 kAs~LrP~s  629 (1238)
T KOG1127|consen  621 KASLLRPLS  629 (1238)
T ss_pred             hhHhcCcHh
Confidence            999999765

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.82  E-value=2.1e-06  Score=74.61  Aligned_cols=185  Identities=21%  Similarity=0.141  Sum_probs=127.0

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc--------c---CcHHHHHH-------
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR--------E---NDKEASEK-------   93 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~--------~---~~~~~~~~-------   93 (259)
                      +..+..++  .. |++..|..-..++++..|.+++++....++|...|++..-        +   ....+...       
T Consensus       157 ltrarlll--~~-~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~  233 (400)
T COG3071         157 LTRARLLL--NR-RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWE  233 (400)
T ss_pred             HHHHHHHH--hC-CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHH
Confidence            45555666  56 9999999999999999999999999999999999987530        0   00000000       


Q ss_pred             -HH-----HHHHHHHHHHHHhCC----CChHHHHHHHHHHHHhhchhhHHHHHhcH---------------------HHH
Q psy9159          94 -YI-----LQGIEYAKKAMELAP----NNSNTQKWYGICVGANGQFQSLKEKIKCG---------------------VVF  142 (259)
Q Consensus        94 -~~-----~~A~~~~~kal~~~P----~~~~~~~~la~~~~~~~~~~~~~~~~~~~---------------------~~a  142 (259)
                       .+     +++.+-+...++--|    +++..-..++.-+...|+.+.+..-+.+.                     ..-
T Consensus       234 glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l  313 (400)
T COG3071         234 GLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPL  313 (400)
T ss_pred             HHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHH
Confidence             00     011111111111111    12333333344444444444433222111                     133


Q ss_pred             HHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHH
Q psy9159         143 RDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCY  222 (259)
Q Consensus       143 ~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~  222 (259)
                      ++..++.++..|++|..+..||+.|++.                    +.+.+|-.+|+.|++..| + ...+..+|.++
T Consensus       314 ~k~~e~~l~~h~~~p~L~~tLG~L~~k~--------------------~~w~kA~~~leaAl~~~~-s-~~~~~~la~~~  371 (400)
T COG3071         314 IKAAEKWLKQHPEDPLLLSTLGRLALKN--------------------KLWGKASEALEAALKLRP-S-ASDYAELADAL  371 (400)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHh--------------------hHHHHHHHHHHHHHhcCC-C-hhhHHHHHHHH
Confidence            5778899999999999999999999875                    679999999999999999 4 67799999999


Q ss_pred             HHhCCHHHHHHHHHHHhcC
Q psy9159         223 IEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       223 ~~~g~~~eA~~~~~kal~l  241 (259)
                      -.+|+..+|.+..++++.+
T Consensus       372 ~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         372 DQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHcCChHHHHHHHHHHHHH
Confidence            9999999999999999853

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.80  E-value=1.1e-07  Score=84.46  Aligned_cols=112  Identities=23%  Similarity=0.254  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhcc
Q psy9159          94 YILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKL  173 (259)
Q Consensus        94 ~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~  173 (259)
                      .++.|++.+++..+.+|+   +...++.++...++-.          +|.+.+.++|+.+|.+...+...+.++...   
T Consensus       184 ~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~----------~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k---  247 (395)
T PF09295_consen  184 RYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEV----------EAIRLLNEALKENPQDSELLNLQAEFLLSK---  247 (395)
T ss_pred             cHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---
Confidence            467999999999999986   3445666665443322          577889999999999999999999988774   


Q ss_pred             chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159         174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK  239 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal  239 (259)
                                       ++++.|+...++|+++.| +....|..|+.+|..+|++++|+-.++-+-
T Consensus       248 -----------------~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  248 -----------------KKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             -----------------CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence                             889999999999999999 778999999999999999999998877543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.80  E-value=1.9e-08  Score=67.92  Aligned_cols=59  Identities=25%  Similarity=0.326  Sum_probs=54.7

Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~  249 (259)
                      .+++++|++++++++.++| +.+..+..+|.++..+|++++|++.++++++..|++++-.
T Consensus         8 ~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen    8 QEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             CCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence            3889999999999999999 7899999999999999999999999999999999776543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.79  E-value=1e-06  Score=81.13  Aligned_cols=176  Identities=19%  Similarity=0.151  Sum_probs=123.7

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-----hh-------c-----c-----------
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYD-----IK-------R-----R-----------   84 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-----~~-------~-----~-----------   84 (259)
                      .++..++  .. |++++|...|+..|+.+|+|...+..+..+......     ..       +     +           
T Consensus        43 ~rA~ll~--kL-g~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~  119 (517)
T PF12569_consen   43 KRAELLL--KL-GRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLD  119 (517)
T ss_pred             HHHHHHH--Hc-CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcc
Confidence            3444454  45 999999999999999999999999888888722211     00       0     0           


Q ss_pred             --cCcH------------------------------HHHHHHHHHHHHHHHHHHHhC----------CCCh----HHHHH
Q psy9159          85 --ENDK------------------------------EASEKYILQGIEYAKKAMELA----------PNNS----NTQKW  118 (259)
Q Consensus        85 --~~~~------------------------------~~~~~~~~~A~~~~~kal~~~----------P~~~----~~~~~  118 (259)
                        .++.                              ..+...+.+-..-+...++..          ++.|    ++++.
T Consensus       120 ~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~  199 (517)
T PF12569_consen  120 FLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYF  199 (517)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHH
Confidence              0000                              011112222233333333221          1222    34455


Q ss_pred             HHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHH
Q psy9159         119 YGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIA  198 (259)
Q Consensus       119 la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~  198 (259)
                      ++..+...|++.          .|.++.++||+.+|+.++.|+..|+++-..                    |++.+|.+
T Consensus       200 lAqhyd~~g~~~----------~Al~~Id~aI~htPt~~ely~~KarilKh~--------------------G~~~~Aa~  249 (517)
T PF12569_consen  200 LAQHYDYLGDYE----------KALEYIDKAIEHTPTLVELYMTKARILKHA--------------------GDLKEAAE  249 (517)
T ss_pred             HHHHHHHhCCHH----------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHC--------------------CCHHHHHH
Confidence            677777777776          578899999999999999999999999774                    88999999


Q ss_pred             HHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         199 NCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       199 ~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                      +++.|.++|+ ..-..-.--+..+.+.|+.++|.+.+.....-+
T Consensus       250 ~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  250 AMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            9999999999 444455567888999999999999998886655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0543|consensus

Probab=98.77  E-value=1.7e-07  Score=81.67  Aligned_cols=111  Identities=21%  Similarity=0.186  Sum_probs=91.6

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhcCC----C-----------CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHH
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQP----N-----------DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQ   97 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p----~-----------~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~   97 (259)
                      +.+..+|  .. |+|..|...|++++..-+    .           -..++.+++.+|..++.+.              +
T Consensus       213 e~Gn~~f--K~-gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~--------------~  275 (397)
T KOG0543|consen  213 ERGNVLF--KE-GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYK--------------E  275 (397)
T ss_pred             HhhhHHH--hh-chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHH--------------H
Confidence            4556677  45 999999999999876322    1           1345677788888777664              9


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159          98 GIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI  170 (259)
Q Consensus        98 A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~  170 (259)
                      |+..|.++|+++|+|..+++.-|.++..++++.          .|+..|+++++++|+|..+...|..+-.+.
T Consensus       276 Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~----------~A~~df~ka~k~~P~Nka~~~el~~l~~k~  338 (397)
T KOG0543|consen  276 AIESCNKVLELDPNNVKALYRRGQALLALGEYD----------LARDDFQKALKLEPSNKAARAELIKLKQKI  338 (397)
T ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHhhccHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988          567899999999999999999988765443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.76  E-value=1.6e-07  Score=80.63  Aligned_cols=155  Identities=14%  Similarity=-0.014  Sum_probs=110.1

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      |++++|+..+.+.     .+.+.....-.+|..+++.              +.|...+++.-+.+.|..-....-+++-.
T Consensus       116 ~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~--------------dlA~k~l~~~~~~~eD~~l~qLa~awv~l  176 (290)
T PF04733_consen  116 GDYEEALKLLHKG-----GSLELLALAVQILLKMNRP--------------DLAEKELKNMQQIDEDSILTQLAEAWVNL  176 (290)
T ss_dssp             CHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-H--------------HHHHHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCH--------------HHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            6666666655543     4455555555666666654              48888888888888877666555566655


Q ss_pred             Hhhc--hhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q psy9159         125 ANGQ--FQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLK  202 (259)
Q Consensus       125 ~~~~--~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~k  202 (259)
                      ..|.  +.          .+...|++.-+..|..+..++.++.++..+                    |+|++|.+.+++
T Consensus       177 ~~g~e~~~----------~A~y~f~El~~~~~~t~~~lng~A~~~l~~--------------------~~~~eAe~~L~~  226 (290)
T PF04733_consen  177 ATGGEKYQ----------DAFYIFEELSDKFGSTPKLLNGLAVCHLQL--------------------GHYEEAEELLEE  226 (290)
T ss_dssp             HHTTTCCC----------HHHHHHHHHHCCS--SHHHHHHHHHHHHHC--------------------T-HHHHHHHHHH
T ss_pred             HhCchhHH----------HHHHHHHHHHhccCCCHHHHHHHHHHHHHh--------------------CCHHHHHHHHHH
Confidence            5553  22          456778887777788888888888877764                    889999999999


Q ss_pred             HHhhCCCCcHHhHHHHHHHHHHhCCH-HHHHHHHHHHhcCCCCCccch
Q psy9159         203 AEELAPAPWKENQLLIAKCYIEAGEY-AKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       203 Ai~l~P~~~~~~~~~la~~~~~~g~~-~eA~~~~~kal~l~p~~~~~~  249 (259)
                      |++.+| .++....+++.+...+|+. +.+.+++.+....+|..+--+
T Consensus       227 al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~  273 (290)
T PF04733_consen  227 ALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK  273 (290)
T ss_dssp             HCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred             HHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence            999999 6789999999999999988 667788888888888766533

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.74  E-value=2.6e-07  Score=78.13  Aligned_cols=106  Identities=14%  Similarity=0.134  Sum_probs=89.0

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND---PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      +..+..++. .. |+|++|+..|+..++.+|++   +.+++.+|.+|+..|++.              +|+..|+++++.
T Consensus       146 Y~~A~~l~~-~~-~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~--------------~A~~~f~~vv~~  209 (263)
T PRK10803        146 YNAAIALVQ-DK-SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKD--------------DAAYYFASVVKN  209 (263)
T ss_pred             HHHHHHHHH-hc-CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHH
Confidence            555555531 45 99999999999999999999   689999999999999875              999999999999


Q ss_pred             CCC---ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHH
Q psy9159         109 APN---NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLK  163 (259)
Q Consensus       109 ~P~---~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~l  163 (259)
                      .|+   .+++++.+|.++...|+..          .++..|+++++..|++..+-...
T Consensus       210 yP~s~~~~dAl~klg~~~~~~g~~~----------~A~~~~~~vi~~yP~s~~a~~A~  257 (263)
T PRK10803        210 YPKSPKAADAMFKVGVIMQDKGDTA----------KAKAVYQQVIKKYPGTDGAKQAQ  257 (263)
T ss_pred             CCCCcchhHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHCcCCHHHHHHH
Confidence            988   4777788899988888776          56789999999999988654443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.73  E-value=4.2e-07  Score=74.10  Aligned_cols=156  Identities=17%  Similarity=0.189  Sum_probs=114.7

Q ss_pred             CCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhhchhhHHHHHhcH
Q psy9159          63 NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS---NTQKWYGICVGANGQFQSLKEKIKCG  139 (259)
Q Consensus        63 ~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~---~~~~~la~~~~~~~~~~~~~~~~~~~  139 (259)
                      .+++.++..|..++..|++.              +|+..+++.+...|+.+   .+.+++|.++...+++.         
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~--------------~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~---------   59 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYE--------------EAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYE---------   59 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HH--------------HHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HH---------
T ss_pred             CCHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHH---------
Confidence            35788899999999999875              99999999999998865   55788888888888877         


Q ss_pred             HHHHHHHHHHHccCCCChh---HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHh--
Q psy9159         140 VVFRDQMNKAIQMAPKDFT---LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKEN--  214 (259)
Q Consensus       140 ~~a~~~~~kAl~l~P~~~~---~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~--  214 (259)
                       .+...+++.++..|+++.   +++.+|.+++....-.         +.....++...+|+..|+..+..-| +...+  
T Consensus        60 -~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~---------~~~~~D~~~~~~A~~~~~~li~~yP-~S~y~~~  128 (203)
T PF13525_consen   60 -EAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGI---------LRSDRDQTSTRKAIEEFEELIKRYP-NSEYAEE  128 (203)
T ss_dssp             -HHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHH---------H-TT---HHHHHHHHHHHHHHHH-T-TSTTHHH
T ss_pred             -HHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccc---------hhcccChHHHHHHHHHHHHHHHHCc-CchHHHH
Confidence             567888999999999884   7899998877653210         0001123557899999999999999 44222  


Q ss_pred             ---------------HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         215 ---------------QLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       215 ---------------~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                                     -+.+|..|.+.|++..|+.-++.+++.-|+++...+.+
T Consensus       129 A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al  181 (203)
T PF13525_consen  129 AKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEAL  181 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHH
Confidence                           25678899999999999999999999999988765543

>KOG1128|consensus

Probab=98.73  E-value=1.1e-07  Score=87.76  Aligned_cols=120  Identities=13%  Similarity=0.085  Sum_probs=106.6

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      ++|+++...++..++++|-..+.|+.+|.+..++++..              .|..+|.+++.++|++.++|.+++-++.
T Consensus       499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q--------------~av~aF~rcvtL~Pd~~eaWnNls~ayi  564 (777)
T KOG1128|consen  499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ--------------AAVKAFHRCVTLEPDNAEAWNNLSTAYI  564 (777)
T ss_pred             hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH--------------HHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence            89999999999999999999999999999999998865              9999999999999999999999999988


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE  204 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi  204 (259)
                      +.++-.          ++...+.+|++.+-.++.+|-+.-.+....                    |.+++|++.|.+.+
T Consensus       565 ~~~~k~----------ra~~~l~EAlKcn~~~w~iWENymlvsvdv--------------------ge~eda~~A~~rll  614 (777)
T KOG1128|consen  565 RLKKKK----------RAFRKLKEALKCNYQHWQIWENYMLVSVDV--------------------GEFEDAIKAYHRLL  614 (777)
T ss_pred             HHhhhH----------HHHHHHHHHhhcCCCCCeeeechhhhhhhc--------------------ccHHHHHHHHHHHH
Confidence            887654          466788999999999999998877666554                    77999999999999


Q ss_pred             hhCC
Q psy9159         205 ELAP  208 (259)
Q Consensus       205 ~l~P  208 (259)
                      ++.-
T Consensus       615 ~~~~  618 (777)
T KOG1128|consen  615 DLRK  618 (777)
T ss_pred             Hhhh
Confidence            8754

>PRK15331 chaperone protein SicA; Provisional

Probab=98.68  E-value=8.4e-07  Score=68.79  Aligned_cols=109  Identities=15%  Similarity=0.053  Sum_probs=96.4

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHH
Q psy9159          55 MELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKE  134 (259)
Q Consensus        55 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~  134 (259)
                      ..+....++.-+..+..|.-.++.|++.              +|...|+-..-.+|.|+..|..||.++...+++.    
T Consensus        27 k~l~gis~~~le~iY~~Ay~~y~~Gk~~--------------eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~----   88 (165)
T PRK15331         27 KDVHGIPQDMMDGLYAHAYEFYNQGRLD--------------EAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQ----   88 (165)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHH----
Confidence            3444556677788889999999999875              9999999999999999999999999999888887    


Q ss_pred             HHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC
Q psy9159         135 KIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP  208 (259)
Q Consensus       135 ~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P  208 (259)
                            .|...|..|..+++++|...+..|.+++.+                    |+.+.|+.+|+-+++ .|
T Consensus        89 ------~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l--------------------~~~~~A~~~f~~a~~-~~  135 (165)
T PRK15331         89 ------KACDLYAVAFTLLKNDYRPVFFTGQCQLLM--------------------RKAAKARQCFELVNE-RT  135 (165)
T ss_pred             ------HHHHHHHHHHHcccCCCCccchHHHHHHHh--------------------CCHHHHHHHHHHHHh-Cc
Confidence                  567899999999999999999999999886                    779999999999999 56

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.67  E-value=1e-06  Score=78.46  Aligned_cols=114  Identities=14%  Similarity=0.213  Sum_probs=94.3

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA  109 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~  109 (259)
                      .+....-.++. .+ ++++.|++++++..+.+|+   +...+++++..+++..              +|+..+.+++...
T Consensus       170 yLv~~Ll~~l~-~t-~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~--------------~AI~ll~~aL~~~  230 (395)
T PF09295_consen  170 YLVDTLLKYLS-LT-QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEV--------------EAIRLLNEALKEN  230 (395)
T ss_pred             HHHHHHHHHHh-hc-ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHH--------------HHHHHHHHHHHhC
Confidence            33444555553 44 8999999999999998864   6667899998776543              9999999999999


Q ss_pred             CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhc
Q psy9159         110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISK  172 (259)
Q Consensus       110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~  172 (259)
                      |.++..+...+..+...+++.          .|....++|+++.|++...|+.|+.+|..+++
T Consensus       231 p~d~~LL~~Qa~fLl~k~~~~----------lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d  283 (395)
T PF09295_consen  231 PQDSELLNLQAEFLLSKKKYE----------LALEIAKKAVELSPSEFETWYQLAECYIQLGD  283 (395)
T ss_pred             CCCHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC
Confidence            999988888888887777775          57889999999999999999999999988633

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.63  E-value=1e-05  Score=64.09  Aligned_cols=155  Identities=20%  Similarity=0.250  Sum_probs=98.4

Q ss_pred             CCHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH-
Q psy9159          45 DDKAKAYNLTMELNN--KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI-  121 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~-  121 (259)
                      +.+..++..+...+.  ..+.....+...+..+...+++.              .+...+.+++..++++.......+. 
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (291)
T COG0457          73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYE--------------EALELLEKALALDPDPDLAEALLALG  138 (291)
T ss_pred             ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHH--------------HHHHHHHHHHcCCCCcchHHHHHHHH
Confidence            888888888888886  67888888888888887777654              7777888888777776555555555 


Q ss_pred             HHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC---ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHH
Q psy9159         122 CVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK---DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIA  198 (259)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~---~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~  198 (259)
                      ++...+++.          .+...+++++..+|.   ....+..++..+...                    +++++|+.
T Consensus       139 ~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~a~~  188 (291)
T COG0457         139 ALYELGDYE----------EALELYEKALELDPELNELAEALLALGALLEAL--------------------GRYEEALE  188 (291)
T ss_pred             HHHHcCCHH----------HHHHHHHHHHhcCCCccchHHHHHHhhhHHHHh--------------------cCHHHHHH
Confidence            555555554          445666776666663   333333343332221                    45666666


Q ss_pred             HHHHHHhhCCCC-cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         199 NCLKAEELAPAP-WKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       199 ~~~kAi~l~P~~-~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      .+.+++...| . ....+..++.++...+++++|+..+.+++...|.
T Consensus       189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         189 LLEKALKLNP-DDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHHHHHhhCc-ccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            6666666666 3 3455566666666666666666666666665554

>KOG3785|consensus

Probab=98.63  E-value=1.7e-06  Score=74.35  Aligned_cols=194  Identities=16%  Similarity=0.106  Sum_probs=124.0

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP-DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA  109 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~  109 (259)
                      .+.+.+.++  .+ .+|.-|+.+++-....+.+.. ++-..+|.+++.+|++.              +|+..|+-+.+.+
T Consensus        25 K~P~Ledfl--s~-rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~--------------~Al~~Y~~~~~~~   87 (557)
T KOG3785|consen   25 KMPELEDFL--SN-RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYE--------------EALNVYTFLMNKD   87 (557)
T ss_pred             cCchHHHHH--hc-ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHH--------------HHHHHHHHHhccC
Confidence            345567777  56 888888888887776554332 45556788888888875              8888888888877


Q ss_pred             CCChHHHHHHHHHHHHhhchhhHHHHHhcHH----HHHHHHHHHHccCCCCh--hHHHHHHHHHHHhhccchHHHHHHHH
Q psy9159         110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGV----VFRDQMNKAIQMAPKDF--TLYSLKGRYQYEISKLSFFERKIAVL  183 (259)
Q Consensus       110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~----~a~~~~~kAl~l~P~~~--~~~~~lG~~~~~~~~~~~~~~~~~~~  183 (259)
                      .-+++.+.+++-+...+|.+..+......+.    ...=.+.-|.+++...-  ..+..|+.....       .-.+++.
T Consensus        88 ~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~Ed-------qLSLAsv  160 (557)
T KOG3785|consen   88 DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLED-------QLSLASV  160 (557)
T ss_pred             CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHH-------HHhHHHH
Confidence            7777778888888888888775433222110    00001111222221110  111112111100       0001111


Q ss_pred             HhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         184 IVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       184 ~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                      .+-   .-.|.+||+.|++.+.-+| .....-.++|.||.++.-++-+.+.++--++.-|+++-.+++.
T Consensus       161 hYm---R~HYQeAIdvYkrvL~dn~-ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLk  225 (557)
T KOG3785|consen  161 HYM---RMHYQEAIDVYKRVLQDNP-EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLK  225 (557)
T ss_pred             HHH---HHHHHHHHHHHHHHHhcCh-hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHH
Confidence            110   1348999999999999999 6777788999999999999999999999999999988766553

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.62  E-value=1.2e-06  Score=65.08  Aligned_cols=97  Identities=14%  Similarity=0.062  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC---hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159         113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD---FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD  189 (259)
Q Consensus       113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~---~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~  189 (259)
                      |.+++..|.++-..|+..          +++..|+++++..++.   ..++..+|..+..+                   
T Consensus         1 ~~~~~~~A~a~d~~G~~~----------~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L-------------------   51 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREE----------EAIPLYRRALAAGLSGADRRRALIQLASTLRNL-------------------   51 (120)
T ss_pred             CchHHHHHHHHHhcCCHH----------HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-------------------
Confidence            357788999998888876          5789999999986665   46788888887764                   


Q ss_pred             CCcHHHHHHHHHHHHhhCCCC---cHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         190 EPTAEDAIANCLKAEELAPAP---WKENQLLIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~---~~~~~~~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                       |++++|+..+++++.-.| +   +......++.++...|+.++|++++-.++.
T Consensus        52 -G~~deA~~~L~~~~~~~p-~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   52 -GRYDEALALLEEALEEFP-DDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             -CCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             899999999999999988 5   566778899999999999999999988875

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.62  E-value=3.2e-08  Score=67.72  Aligned_cols=68  Identities=22%  Similarity=0.352  Sum_probs=55.8

Q ss_pred             CCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC---CCC---cHHhHHHHHHHHHHhCC
Q psy9159         154 PKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA---PAP---WKENQLLIAKCYIEAGE  227 (259)
Q Consensus       154 P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~---P~~---~~~~~~~la~~~~~~g~  227 (259)
                      |+-+.++..+|.+|...                    |++++|+++|++|+++.   +++   ....+.++|.++..+|+
T Consensus         2 ~~~a~~~~~la~~~~~~--------------------~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~   61 (78)
T PF13424_consen    2 PDTANAYNNLARVYREL--------------------GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD   61 (78)
T ss_dssp             HHHHHHHHHHHHHHHHT--------------------T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC
Confidence            44567889999998875                    88999999999999762   212   24568999999999999


Q ss_pred             HHHHHHHHHHHhcC
Q psy9159         228 YAKAVQWLDKAKAI  241 (259)
Q Consensus       228 ~~eA~~~~~kal~l  241 (259)
                      +++|++++++++++
T Consensus        62 ~~~A~~~~~~al~i   75 (78)
T PF13424_consen   62 YEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999999875

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.62  E-value=3.1e-07  Score=61.81  Aligned_cols=64  Identities=19%  Similarity=0.358  Sum_probs=58.8

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYG  120 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la  120 (259)
                      .. +++++|++.+++++..+|+++..++..|.++..+|++.              +|.+.++++++..|+++.+....+
T Consensus         7 ~~-~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~--------------~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    7 QQ-EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYE--------------EALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             hC-CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHH--------------HHHHHHHHHHHHCCCcHHHHHHHH
Confidence            56 99999999999999999999999999999999999876              999999999999999988765443

>KOG1130|consensus

Probab=98.61  E-value=9e-08  Score=83.47  Aligned_cols=189  Identities=15%  Similarity=0.100  Sum_probs=110.0

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHHhhchhcc-------------c-------
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP----DVLYRLAKACHCLYDIKRR-------------E-------   85 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~~-------------~-------   85 (259)
                      ++..++.++.  .. |+++..+++|+.+++..-++-    .||..||.+|+.++++.+.             -       
T Consensus        19 eLalEGERLc--k~-gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA   95 (639)
T KOG1130|consen   19 ELALEGERLC--KM-GDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA   95 (639)
T ss_pred             HHHHHHHHHH--hc-cchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence            3567888999  67 999999999999999877663    4566677777777766531             0       


Q ss_pred             ------CcHHHHHHHHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhhchhhH---HHH-------HhcHHHHH
Q psy9159          86 ------NDKEASEKYILQGIEYAKKAMELAPN------NSNTQKWYGICVGANGQFQSL---KEK-------IKCGVVFR  143 (259)
Q Consensus        86 ------~~~~~~~~~~~~A~~~~~kal~~~P~------~~~~~~~la~~~~~~~~~~~~---~~~-------~~~~~~a~  143 (259)
                            ++.-.-++.|++|+..+.+-|.+..+      ...+++++|.++...|.-.+.   .++       ......|.
T Consensus        96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av  175 (639)
T KOG1130|consen   96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV  175 (639)
T ss_pred             cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence                  11224467789999999888765433      456788888888877643221   111       01111233


Q ss_pred             HHHHHHHccCCCCh------hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCC-----cH
Q psy9159         144 DQMNKAIQMAPKDF------TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAP-----WK  212 (259)
Q Consensus       144 ~~~~kAl~l~P~~~------~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~-----~~  212 (259)
                      +.|..-|++-....      .++-+||..|+-                    .|+|+.||.+.+.-+.+....     .-
T Consensus       176 ~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYl--------------------LGdf~~ai~~H~~RL~ia~efGDrAaeR  235 (639)
T KOG1130|consen  176 KFYMENLELSEKLGDRLAQGRAYGNLGNTYYL--------------------LGDFDQAIHFHKLRLEIAQEFGDRAAER  235 (639)
T ss_pred             HHHHHHHHHHHHhhhHHhhcchhcccCceeee--------------------eccHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            34444444322211      122223332222                    366666666666555553211     12


Q ss_pred             HhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         213 ENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       213 ~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                      +++.+||+|++.+|+++.|++.|++++.+
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence            34566666666666666666666665443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.57  E-value=8.5e-07  Score=76.18  Aligned_cols=155  Identities=13%  Similarity=0.029  Sum_probs=100.2

Q ss_pred             CCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQP--NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGIC  122 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~  122 (259)
                      ++-++++..+++.+....  .++-+....|.++...|++              ++|+..+.+.     ++.++......+
T Consensus        80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~--------------~~AL~~l~~~-----~~lE~~al~Vqi  140 (290)
T PF04733_consen   80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDY--------------EEALKLLHKG-----GSLELLALAVQI  140 (290)
T ss_dssp             TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH--------------HHHHCCCTTT-----TCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH--------------HHHHHHHHcc-----CcccHHHHHHHH
Confidence            345555555555443321  2333333344444444443              4777666554     566666666666


Q ss_pred             HHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q psy9159         123 VGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLK  202 (259)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~k  202 (259)
                      +-..++++          .|.+.+++.-+++.+...+...-+.+.+..|.                  +++.+|...|+.
T Consensus       141 ~L~~~R~d----------lA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~------------------e~~~~A~y~f~E  192 (290)
T PF04733_consen  141 LLKMNRPD----------LAEKELKNMQQIDEDSILTQLAEAWVNLATGG------------------EKYQDAFYIFEE  192 (290)
T ss_dssp             HHHTT-HH----------HHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT------------------TCCCHHHHHHHH
T ss_pred             HHHcCCHH----------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc------------------hhHHHHHHHHHH
Confidence            66666655          45677788888887766555555544444332                  579999999999


Q ss_pred             HHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         203 AEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       203 Ai~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      ..+..| .++.....+|.|++.+|++++|.+.+.++++.+|.+++
T Consensus       193 l~~~~~-~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d  236 (290)
T PF04733_consen  193 LSDKFG-STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD  236 (290)
T ss_dssp             HHCCS---SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred             HHhccC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence            887766 67788889999999999999999999999999988764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.55  E-value=3.8e-07  Score=81.14  Aligned_cols=71  Identities=14%  Similarity=0.067  Sum_probs=64.6

Q ss_pred             HhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhH---HHHHHHHHHHhhccchHHHHHHHH
Q psy9159         107 ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTL---YSLKGRYQYEISKLSFFERKIAVL  183 (259)
Q Consensus       107 ~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~---~~~lG~~~~~~~~~~~~~~~~~~~  183 (259)
                      +.+|+++++|.++|.++...|+++          +|...+++||+++|+++.+   |+++|.+|..+             
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGrye----------EAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L-------------  125 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVK----------DALAQFETALELNPNPDEAQAAYYNKACCHAYR-------------  125 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc-------------
Confidence            468999999999999999999988          5779999999999999965   99999988774             


Q ss_pred             HhcCCCCCcHHHHHHHHHHHHhhC
Q psy9159         184 IVSDLDEPTAEDAIANCLKAEELA  207 (259)
Q Consensus       184 ~~~~~~~g~~~eAi~~~~kAi~l~  207 (259)
                             |++++|+.++++|+++.
T Consensus       126 -------Gr~dEAla~LrrALels  142 (453)
T PLN03098        126 -------EEGKKAADCLRTALRDY  142 (453)
T ss_pred             -------CCHHHHHHHHHHHHHhc
Confidence                   88999999999999984

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.53  E-value=2e-05  Score=62.36  Aligned_cols=155  Identities=25%  Similarity=0.243  Sum_probs=122.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHH-HHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC---ChHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAK-ACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN---NSNTQKWYG  120 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~-~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~---~~~~~~~la  120 (259)
                      +++.+++..+..++...+.+.......+. ++...|+..              .|...+++++..+|.   ........+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~a~~~~~~~~~~~~~~~~~~~~~~~~~  174 (291)
T COG0457         109 GKYEEALELLEKALALDPDPDLAEALLALGALYELGDYE--------------EALELYEKALELDPELNELAEALLALG  174 (291)
T ss_pred             hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHhcCCCccchHHHHHHhh
Confidence            78999999999999988887655556666 777777765              999999999998873   333333333


Q ss_pred             HHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC-ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHH
Q psy9159         121 ICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK-DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIAN  199 (259)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~-~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~  199 (259)
                      ..+...++..          .+...+.+++...|. ....+..+|..+...                    ++++.|+..
T Consensus       175 ~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~a~~~  224 (291)
T COG0457         175 ALLEALGRYE----------EALELLEKALKLNPDDDAEALLNLGLLYLKL--------------------GKYEEALEY  224 (291)
T ss_pred             hHHHHhcCHH----------HHHHHHHHHHhhCcccchHHHHHhhHHHHHc--------------------ccHHHHHHH
Confidence            3323333333          567899999999999 688999999887764                    678999999


Q ss_pred             HHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         200 CLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       200 ~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      +.+++...| .....+..++..+...++++++...+.+++...|.
T Consensus       225 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         225 YEKALELDP-DNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHhhCc-ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            999999999 55667888888888778899999999999999886

>KOG2610|consensus

Probab=98.51  E-value=4e-06  Score=71.66  Aligned_cols=159  Identities=17%  Similarity=0.100  Sum_probs=123.6

Q ss_pred             HHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh-CCCC
Q psy9159          34 EIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL-APNN  112 (259)
Q Consensus        34 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~-~P~~  112 (259)
                      .+..++  +. |++.+|.....+.++..|.+--++-.--.+++.+|+..              .-+..++|.+-. +|+-
T Consensus       109 ~aai~~--~~-g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~--------------~~k~ai~kIip~wn~dl  171 (491)
T KOG2610|consen  109 KAAILW--GR-GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQI--------------GKKNAIEKIIPKWNADL  171 (491)
T ss_pred             hHHHhh--cc-ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchh--------------hhhhHHHHhccccCCCC
Confidence            344555  66 99999999999999999999988888889999999875              566778888877 7776


Q ss_pred             h---HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159         113 S---NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD  189 (259)
Q Consensus       113 ~---~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~  189 (259)
                      |   -.+--++..+...|.+.          +|.+..++++++||.+..+.+.++.++...                   
T Consensus       172 p~~sYv~GmyaFgL~E~g~y~----------dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~-------------------  222 (491)
T KOG2610|consen  172 PCYSYVHGMYAFGLEECGIYD----------DAEKQADRALQINRFDCWASHAKAHVLEMN-------------------  222 (491)
T ss_pred             cHHHHHHHHHHhhHHHhccch----------hHHHHHHhhccCCCcchHHHHHHHHHHHhc-------------------
Confidence            4   33334555555666665          456777999999999999999999988653                   


Q ss_pred             CCcHHHHHHHHHHHHhhCCCCc---HHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159         190 EPTAEDAIANCLKAEELAPAPW---KENQLLIAKCYIEAGEYAKAVQWLDKAK  239 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~---~~~~~~la~~~~~~g~~~eA~~~~~kal  239 (259)
                       |++.|+.++..+.-......+   ..+|-.-|.+++.-+.++.|++.|++-+
T Consensus       223 -~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  223 -GRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             -chhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence             789999999888766544222   2246667899999999999999998754

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.50  E-value=1.9e-05  Score=78.82  Aligned_cols=51  Identities=12%  Similarity=0.049  Sum_probs=29.7

Q ss_pred             CCcHHHHHHHHHHHHhh--CCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         190 EPTAEDAIANCLKAEEL--APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l--~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                      .|++++|++.|++..+.  .|  +...|..+-.++...|++++|.+.+.+.++..
T Consensus       732 ~G~~eeAlelf~eM~~~Gi~P--d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G  784 (1060)
T PLN03218        732 GNQLPKALEVLSEMKRLGLCP--NTITYSILLVASERKDDADVGLDLLSQAKEDG  784 (1060)
T ss_pred             CCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            36666666666655443  34  24455555566666666666666666665543

>KOG4340|consensus

Probab=98.49  E-value=4.6e-06  Score=70.31  Aligned_cols=169  Identities=15%  Similarity=0.044  Sum_probs=122.6

Q ss_pred             HHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHH
Q psy9159          36 DRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNT  115 (259)
Q Consensus        36 ~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~  115 (259)
                      -.++  .. .+|..||..+..-.+..|.+-..+..||.+|+...++.              .|.+.|++.-.+.|.....
T Consensus        18 y~lI--~d-~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~--------------~AA~CYeQL~ql~P~~~qY   80 (459)
T KOG4340|consen   18 YRLI--RD-ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFA--------------LAAECYEQLGQLHPELEQY   80 (459)
T ss_pred             HHHH--HH-hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhChHHHHH
Confidence            3456  56 89999999999999999999999999999999877654              9999999999999998888


Q ss_pred             HHHHHHHHHHhhchhhHHHHHhcHHHHHHHH------HHHHc--------------cCC--CChhHHHHHHHHHHHhhcc
Q psy9159         116 QKWYGICVGANGQFQSLKEKIKCGVVFRDQM------NKAIQ--------------MAP--KDFTLYSLKGRYQYEISKL  173 (259)
Q Consensus       116 ~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~------~kAl~--------------l~P--~~~~~~~~lG~~~~~~~~~  173 (259)
                      ....+..+...+.+..+..-.....+-....      +-||+              .-|  +.+......|-+.++    
T Consensus        81 rlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk----  156 (459)
T KOG4340|consen   81 RLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK----  156 (459)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeec----
Confidence            7778888777776654432211110000111      12221              112  222333333322222    


Q ss_pred             chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                                      .|+|++|++-|+.|++... ..+-.-+++|.|+...|+++.|+++....++..
T Consensus       157 ----------------egqyEaAvqkFqaAlqvsG-yqpllAYniALaHy~~~qyasALk~iSEIieRG  208 (459)
T KOG4340|consen  157 ----------------EGQYEAAVQKFQAALQVSG-YQPLLAYNLALAHYSSRQYASALKHISEIIERG  208 (459)
T ss_pred             ----------------cccHHHHHHHHHHHHhhcC-CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence                            5999999999999999998 777788899999999999999999887776643

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.48  E-value=3.8e-06  Score=62.44  Aligned_cols=97  Identities=18%  Similarity=0.211  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhchhhHHHHHhcHHH
Q psy9159          65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN---SNTQKWYGICVGANGQFQSLKEKIKCGVV  141 (259)
Q Consensus        65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~---~~~~~~la~~~~~~~~~~~~~~~~~~~~~  141 (259)
                      |.++|.+|.++..+|+..              +|+..|+++++..++.   ..++..+|.++..+|+++          +
T Consensus         1 ~~~~~~~A~a~d~~G~~~--------------~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~d----------e   56 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREE--------------EAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYD----------E   56 (120)
T ss_pred             CchHHHHHHHHHhcCCHH--------------HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHH----------H
Confidence            467899999999999875              9999999999986555   457778899999999887          5


Q ss_pred             HHHHHHHHHccCCC---ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHh
Q psy9159         142 FRDQMNKAIQMAPK---DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEE  205 (259)
Q Consensus       142 a~~~~~kAl~l~P~---~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~  205 (259)
                      +...+++++.-.|+   +......++..+...                    |+.++|++.+..++.
T Consensus        57 A~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~--------------------gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   57 ALALLEEALEEFPDDELNAALRVFLALALYNL--------------------GRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHHCCCccccHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHH
Confidence            67888999999898   777777777776664                    889999999988876

>KOG2376|consensus

Probab=98.48  E-value=1.4e-05  Score=72.61  Aligned_cols=199  Identities=11%  Similarity=-0.018  Sum_probs=121.5

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-------cC----c-H-------HHH
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-------EN----D-K-------EAS   91 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-------~~----~-~-------~~~   91 (259)
                      .+-+.....  .+ |+|++|.....+++...|++++++..--.+..+.+.+.+.       ..    . .       .-+
T Consensus        15 l~t~ln~~~--~~-~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   15 LLTDLNRHG--KN-GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYR   91 (652)
T ss_pred             HHHHHHHhc--cc-hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHH
Confidence            344444444  45 9999999999999999999999998887777777776521       00    0 0       123


Q ss_pred             HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHH---H
Q psy9159          92 EKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQ---Y  168 (259)
Q Consensus        92 ~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~---~  168 (259)
                      ++..++|+..++   ..++.+.......|.++.++++|.          ++...|+..++-+-++.......+..-   .
T Consensus        92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~yd----------ealdiY~~L~kn~~dd~d~~~r~nl~a~~a~  158 (652)
T KOG2376|consen   92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYD----------EALDIYQHLAKNNSDDQDEERRANLLAVAAA  158 (652)
T ss_pred             cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHH----------HHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence            344455555555   445555555556666666666665          445666776666655554433322110   0


Q ss_pred             Hhh-------cc--chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh-----C-CCCc--------HHhHHHHHHHHHHh
Q psy9159         169 EIS-------KL--SFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL-----A-PAPW--------KENQLLIAKCYIEA  225 (259)
Q Consensus       169 ~~~-------~~--~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l-----~-P~~~--------~~~~~~la~~~~~~  225 (259)
                      ...       ..  ..++..+..++ -....|+|.+|++.+++|+.+     . .+.+        ..+...|+.++..+
T Consensus       159 l~~~~~q~v~~v~e~syel~yN~Ac-~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~  237 (652)
T KOG2376|consen  159 LQVQLLQSVPEVPEDSYELLYNTAC-ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ  237 (652)
T ss_pred             hhHHHHHhccCCCcchHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence            000       00  01111111110 011259999999999999332     1 1011        23578899999999


Q ss_pred             CCHHHHHHHHHHHhcCCCCCc
Q psy9159         226 GEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       226 g~~~eA~~~~~kal~l~p~~~  246 (259)
                      |+.++|...|...+..+|.|.
T Consensus       238 Gqt~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  238 GQTAEASSIYVDIIKRNPADE  258 (652)
T ss_pred             cchHHHHHHHHHHHHhcCCCc
Confidence            999999999999999887665

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.47  E-value=1.3e-05  Score=64.67  Aligned_cols=163  Identities=12%  Similarity=0.039  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcc---CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q psy9159           4 KLFVLSLFQFAFVQFGECAELFAVN---NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYD   80 (259)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~   80 (259)
                      |+|...+.+...+...+|++.-.+.   ++.+  +..+.  .+ =+.+=-+..+.+++....-.++.   .|..++..|.
T Consensus         2 k~f~~~~~~~~~~~LagC~~~~~~~~~k~~~~--~~~~q--p~-lqqEV~iarlsqlL~~~~l~~ee---RA~l~fERGv   73 (297)
T COG4785           2 KPFLRWCFVATALTLAGCSNQNETFWRKSEVL--AVPLQ--PT-LQQEVILARMSQILASRALTDEE---RAQLLFERGV   73 (297)
T ss_pred             cchHHHHHHHHHHHHHhhccccCceeccccee--eccCC--cc-HHHHHHHHHHHHHHHhccCChHH---HHHHHHHhcc
Confidence            3455556666677778887743221   1111  11111  11 11122233344444332222221   3344444454


Q ss_pred             hhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHH
Q psy9159          81 IKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLY  160 (259)
Q Consensus        81 ~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~  160 (259)
                      ..       ++++...-|+--+.+++++.|+-++++..+|.-+...|++..          +.+.++..+++||+.--++
T Consensus        74 lY-------DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fda----------a~eaFds~~ELDp~y~Ya~  136 (297)
T COG4785          74 LY-------DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA----------AYEAFDSVLELDPTYNYAH  136 (297)
T ss_pred             hh-------hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchH----------HHHHhhhHhccCCcchHHH
Confidence            43       445556688889999999999999999999999999999984          4578899999999999999


Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc
Q psy9159         161 SLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW  211 (259)
Q Consensus       161 ~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~  211 (259)
                      .+.|..++-.                    |++.-|.+-+.+-.+-||++.
T Consensus       137 lNRgi~~YY~--------------------gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         137 LNRGIALYYG--------------------GRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             hccceeeeec--------------------CchHhhHHHHHHHHhcCCCCh
Confidence            9998754432                    889999999999999888443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.45  E-value=1.9e-07  Score=53.24  Aligned_cols=34  Identities=32%  Similarity=0.428  Sum_probs=31.6

Q ss_pred             HHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHH
Q psy9159         199 NCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQ  233 (259)
Q Consensus       199 ~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~  233 (259)
                      +|++||+++| +++.+|++||.+|...|++++|++
T Consensus         1 ~y~kAie~~P-~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNP-NNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCC-CCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4899999999 789999999999999999999973

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.44  E-value=4.7e-06  Score=71.42  Aligned_cols=182  Identities=15%  Similarity=0.043  Sum_probs=108.9

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA  109 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~  109 (259)
                      +.+.++...|+ .. +++++|.+.|.++....-+.-+ .+..|.+|...+...        +....++|+..+++|+.+.
T Consensus        36 ~~y~~Aa~~fk-~~-~~~~~A~~ay~kAa~~~~~~~~-~~~Aa~~~~~Aa~~~--------k~~~~~~Ai~~~~~A~~~y  104 (282)
T PF14938_consen   36 DLYEKAANCFK-LA-KDWEKAAEAYEKAADCYEKLGD-KFEAAKAYEEAANCY--------KKGDPDEAIECYEKAIEIY  104 (282)
T ss_dssp             HHHHHHHHHHH-HT-T-CHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH--------HHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HH-hccchhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH--------HhhCHHHHHHHHHHHHHHH
Confidence            45667777774 44 8888888888887553321111 123444544444432        1124457777888777663


Q ss_pred             --CCCh----HHHHHHHHHHHHh-hchhhHHHHHhcHHHHHHHHHHHHccCCCCh------hHHHHHHHHHHHhhccchH
Q psy9159         110 --PNNS----NTQKWYGICVGAN-GQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF------TLYSLKGRYQYEISKLSFF  176 (259)
Q Consensus       110 --P~~~----~~~~~la~~~~~~-~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~------~~~~~lG~~~~~~~~~~~~  176 (259)
                        -+++    .++..+|.++... +++          ..+.++|++|+++-....      ..+..+|.++.+       
T Consensus       105 ~~~G~~~~aA~~~~~lA~~ye~~~~d~----------e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~-------  167 (282)
T PF14938_consen  105 REAGRFSQAAKCLKELAEIYEEQLGDY----------EKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR-------  167 (282)
T ss_dssp             HHCT-HHHHHHHHHHHHHHHCCTT--H----------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-------
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH-------
Confidence              2222    2233334444333 333          367788888887633322      234445555544       


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC--C---cH-HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchh
Q psy9159         177 ERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA--P---WK-ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHD  250 (259)
Q Consensus       177 ~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~--~---~~-~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~  250 (259)
                                   .|+|++|++.|++.....-+  .   .. ..++..+.|+...|+...|.+.+++..+.+|......+
T Consensus       168 -------------l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E  234 (282)
T PF14938_consen  168 -------------LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE  234 (282)
T ss_dssp             -------------TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred             -------------hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence                         38899999999999875320  1   11 23567888999999999999999999999998777655


Q ss_pred             hh
Q psy9159         251 LS  252 (259)
Q Consensus       251 ~~  252 (259)
                      ..
T Consensus       235 ~~  236 (282)
T PF14938_consen  235 YK  236 (282)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.44  E-value=7.3e-05  Score=59.13  Aligned_cols=149  Identities=16%  Similarity=0.085  Sum_probs=111.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME-LAPNNSNTQKWYGICV  123 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~-~~P~~~~~~~~la~~~  123 (259)
                      ..+.||-+.    +..-|. +.-.++||.+...+|++.              +|...|++++. +--+++.....++..+
T Consensus        74 R~~Rea~~~----~~~ApT-vqnr~rLa~al~elGr~~--------------EA~~hy~qalsG~fA~d~a~lLglA~Aq  134 (251)
T COG4700          74 RHLREATEE----LAIAPT-VQNRYRLANALAELGRYH--------------EAVPHYQQALSGIFAHDAAMLLGLAQAQ  134 (251)
T ss_pred             HHHHHHHHH----Hhhchh-HHHHHHHHHHHHHhhhhh--------------hhHHHHHHHhccccCCCHHHHHHHHHHH
Confidence            344444444    444454 456789999999999986              99999999884 5567777776777777


Q ss_pred             HHhhchhhHHHHHhcHHHHHHHHHHHHccCCC--ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH
Q psy9159         124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK--DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL  201 (259)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~--~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~  201 (259)
                      ...+++.          .+...+++..+-+|.  .+.....+|+.+..                    .|++++|...|+
T Consensus       135 fa~~~~A----------~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa--------------------~g~~a~Aesafe  184 (251)
T COG4700         135 FAIQEFA----------AAQQTLEDLMEYNPAFRSPDGHLLFARTLAA--------------------QGKYADAESAFE  184 (251)
T ss_pred             HhhccHH----------HHHHHHHHHhhcCCccCCCCchHHHHHHHHh--------------------cCCchhHHHHHH
Confidence            7777665          456788898999987  56777888888765                    388999999999


Q ss_pred             HHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHH----HHHHhcCCCC
Q psy9159         202 KAEELAPAPWKENQLLIAKCYIEAGEYAKAVQW----LDKAKAIPVV  244 (259)
Q Consensus       202 kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~----~~kal~l~p~  244 (259)
                      -+++.-| + +.+....+..+.++|+..+|..-    .+.+....|+
T Consensus       185 ~a~~~yp-g-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H  229 (251)
T COG4700         185 VAISYYP-G-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPH  229 (251)
T ss_pred             HHHHhCC-C-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchh
Confidence            9999999 4 67778889999999988877554    4445555544

>KOG4234|consensus

Probab=98.39  E-value=5.9e-06  Score=65.87  Aligned_cols=115  Identities=15%  Similarity=0.074  Sum_probs=86.7

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      ..+-.+++.+|  .+ |+|++|.+-|.+++..-|..++-  ..+.+|...+-..       -+++..+.|+..|.+||++
T Consensus        96 d~lK~EGN~~F--~n-gdyeeA~skY~~Ale~cp~~~~e--~rsIly~Nraaa~-------iKl~k~e~aI~dcsKaiel  163 (271)
T KOG4234|consen   96 DSLKKEGNELF--KN-GDYEEANSKYQEALESCPSTSTE--ERSILYSNRAAAL-------IKLRKWESAIEDCSKAIEL  163 (271)
T ss_pred             HHHHHHHHHhh--hc-ccHHHHHHHHHHHHHhCccccHH--HHHHHHhhhHHHH-------HHhhhHHHHHHHHHhhHhc
Confidence            34567788888  78 99999999999999999987652  2233333222111       2344456999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHH
Q psy9159         109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGR  165 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~  165 (259)
                      +|.+..++...+.++.....++          .+++.|++.++++|....+--...+
T Consensus       164 ~pty~kAl~RRAeayek~ek~e----------ealeDyKki~E~dPs~~ear~~i~r  210 (271)
T KOG4234|consen  164 NPTYEKALERRAEAYEKMEKYE----------EALEDYKKILESDPSRREAREAIAR  210 (271)
T ss_pred             CchhHHHHHHHHHHHHhhhhHH----------HHHHHHHHHHHhCcchHHHHHHHHh
Confidence            9999999888888888776665          5678999999999998876655554

>KOG4234|consensus

Probab=98.38  E-value=2.3e-06  Score=68.19  Aligned_cols=98  Identities=24%  Similarity=0.296  Sum_probs=77.0

Q ss_pred             HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChh-----HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHH
Q psy9159         120 GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT-----LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAE  194 (259)
Q Consensus       120 a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~-----~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  194 (259)
                      |.-+...|+++          .|..-|..||++-|.-+.     .|.+.|.+..+                    +++.+
T Consensus       102 GN~~F~ngdye----------eA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK--------------------l~k~e  151 (271)
T KOG4234|consen  102 GNELFKNGDYE----------EANSKYQEALESCPSTSTEERSILYSNRAAALIK--------------------LRKWE  151 (271)
T ss_pred             HHHhhhcccHH----------HHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH--------------------hhhHH
Confidence            33445566665          456788999999998664     22333333332                    37899


Q ss_pred             HHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         195 DAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       195 eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                      .||+...|||+++| .+..+...+|.+|.++.++++|++.|++.++++|...+.
T Consensus       152 ~aI~dcsKaiel~p-ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea  204 (271)
T KOG4234|consen  152 SAIEDCSKAIELNP-TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA  204 (271)
T ss_pred             HHHHHHHhhHhcCc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence            99999999999999 678888999999999999999999999999999987643

>KOG4648|consensus

Probab=98.38  E-value=1e-06  Score=75.34  Aligned_cols=101  Identities=14%  Similarity=0.056  Sum_probs=88.1

Q ss_pred             HHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHH
Q psy9159         119 YGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIA  198 (259)
Q Consensus       119 la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~  198 (259)
                      -|.-+...|.|+          +|+++|.+++.++|-|+..+.+.+..|++.                    .+|..|..
T Consensus       103 ~GN~yFKQgKy~----------EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~--------------------K~FA~AE~  152 (536)
T KOG4648|consen  103 RGNTYFKQGKYE----------EAIDCYSTAIAVYPHNPVYHINRALAYLKQ--------------------KSFAQAEE  152 (536)
T ss_pred             hhhhhhhccchh----------HHHHHhhhhhccCCCCccchhhHHHHHHHH--------------------HHHHHHHH
Confidence            344455555555          678999999999999999999999999986                    56889999


Q ss_pred             HHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchh
Q psy9159         199 NCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHD  250 (259)
Q Consensus       199 ~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~  250 (259)
                      -+..|+.+|. .+..+|..+|.+...+|+..||.+.++.++++.|.+-|=+.
T Consensus       153 DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK  203 (536)
T KOG4648|consen  153 DCEAAIALDK-LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKK  203 (536)
T ss_pred             hHHHHHHhhH-HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHH
Confidence            9999999998 78899999999999999999999999999999999766443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.36  E-value=2.6e-05  Score=63.07  Aligned_cols=167  Identities=17%  Similarity=0.106  Sum_probs=111.0

Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy9159          44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV  123 (259)
Q Consensus        44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~  123 (259)
                      .|-..-|.--+.+++.+.|+-|+++.-+|.-+...|+++              .|.+.+...+++||.+.-++.+.|+.+
T Consensus        78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fd--------------aa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD--------------AAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccch--------------HHHHHhhhHhccCCcchHHHhccceee
Confidence            366677777899999999999999999999888888865              999999999999999999999999988


Q ss_pred             HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhH--HHHHHH--------------HHHHhhccchHHHHHHHHHhcC
Q psy9159         124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTL--YSLKGR--------------YQYEISKLSFFERKIAVLIVSD  187 (259)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~--~~~lG~--------------~~~~~~~~~~~~~~~~~~~~~~  187 (259)
                      ...|.+.-          |.+.+.+--+-||++|-=  |.-+-.              -+....+-.|=- .+...+   
T Consensus       144 YY~gR~~L----------Aq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~-~iV~~y---  209 (297)
T COG4785         144 YYGGRYKL----------AQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGW-NIVEFY---  209 (297)
T ss_pred             eecCchHh----------hHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhH-HHHHHH---
Confidence            88888763          344455555667777632  211110              000000000000 000011   


Q ss_pred             CCCCcHHHHHHHHHHHHhhCCCCc-------HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         188 LDEPTAEDAIANCLKAEELAPAPW-------KENQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       188 ~~~g~~~eAi~~~~kAi~l~P~~~-------~~~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                        .|+..+ ...++++.+-.. ++       .+.+++||.-+...|+.++|...|+-|+.-+
T Consensus       210 --LgkiS~-e~l~~~~~a~a~-~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         210 --LGKISE-ETLMERLKADAT-DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             --HhhccH-HHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence              133322 223344433332 22       4569999999999999999999999987644

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.35  E-value=2e-05  Score=75.94  Aligned_cols=168  Identities=13%  Similarity=0.005  Sum_probs=96.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL--APNNSNTQKWYGIC  122 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~--~P~~~~~~~~la~~  122 (259)
                      |+.++|...|+++.+   .|...|..+...|...|+.              ++|++.+++..+.  .|+. ..+..+-..
T Consensus       374 G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~--------------~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a  435 (697)
T PLN03081        374 GRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRG--------------TKAVEMFERMIAEGVAPNH-VTFLAVLSA  435 (697)
T ss_pred             CCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCH--------------HHHHHHHHHHHHhCCCCCH-HHHHHHHHH
Confidence            556666666555543   2334555555555555554              3666666665543  3432 223333333


Q ss_pred             HHHhhchhhHHHHHhcHHHHHHHHHHHHc---cCCCChhHHHHHHHHHHHhhccchHHHHHHHH------------HhcC
Q psy9159         123 VGANGQFQSLKEKIKCGVVFRDQMNKAIQ---MAPKDFTLYSLKGRYQYEISKLSFFERKIAVL------------IVSD  187 (259)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~a~~~~~kAl~---l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~------------~~~~  187 (259)
                      +...|..+          ++.+.++...+   +.|+- ..|..+...+.+.|.++...+.+...            +.+.
T Consensus       436 ~~~~g~~~----------~a~~~f~~m~~~~g~~p~~-~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~  504 (697)
T PLN03081        436 CRYSGLSE----------QGWEIFQSMSENHRIKPRA-MHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC  504 (697)
T ss_pred             HhcCCcHH----------HHHHHHHHHHHhcCCCCCc-cchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence            44444443          33445554443   23332 34555555555555544333222210            0001


Q ss_pred             CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         188 LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       188 ~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                      ...|+++.|...+++.++++| ++...|..|..+|...|++++|.+.+++..+..
T Consensus       505 ~~~g~~~~a~~~~~~l~~~~p-~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g  558 (697)
T PLN03081        505 RIHKNLELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG  558 (697)
T ss_pred             HHcCCcHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence            124889999999999999999 667788899999999999999999998876553

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.34  E-value=8.6e-05  Score=74.16  Aligned_cols=185  Identities=14%  Similarity=0.088  Sum_probs=96.2

Q ss_pred             CCcCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhhchhcc--------------cCcHH---------HHHHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNK--QPNDPDVLYRLAKACHCLYDIKRR--------------ENDKE---------ASEKYIL   96 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~~--------------~~~~~---------~~~~~~~   96 (259)
                      .. |++++|+.+|.++...  .|+ ..+|..+..+|...|+..+.              ..+..         -+.+.++
T Consensus       519 k~-G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld  596 (1060)
T PLN03218        519 RA-GQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD  596 (1060)
T ss_pred             HC-cCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence            44 7777777777777543  343 56667777777777665410              00000         0111223


Q ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHcc--CCCChhHHHHHHHHHHHhhcc
Q psy9159          97 QGIEYAKKAMELA-PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM--APKDFTLYSLKGRYQYEISKL  173 (259)
Q Consensus        97 ~A~~~~~kal~~~-P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l--~P~~~~~~~~lG~~~~~~~~~  173 (259)
                      +|.+.+++..+.+ +.+...|..+...+.+.|++.          +|.+.+++..+.  .|+ ...|..+...|.+.++.
T Consensus       597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~d----------eAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~  665 (1060)
T PLN03218        597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD----------FALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDL  665 (1060)
T ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCH
Confidence            4445554444443 223334444444444444433          233444444332  444 34455555555554443


Q ss_pred             chHHHHHHHHHh---------------cCCCCCcHHHHHHHHHHHHhh--CCCCcHHhHHHHHHHHHHhCCHHHHHHHHH
Q psy9159         174 SFFERKIAVLIV---------------SDLDEPTAEDAIANCLKAEEL--APAPWKENQLLIAKCYIEAGEYAKAVQWLD  236 (259)
Q Consensus       174 ~~~~~~~~~~~~---------------~~~~~g~~~eAi~~~~kAi~l--~P~~~~~~~~~la~~~~~~g~~~eA~~~~~  236 (259)
                      +...+.+..+..               .....|++++|++.|++..+.  .|  +...|..|...|.+.|++++|.+.++
T Consensus       666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P--dvvtyN~LI~gy~k~G~~eeAlelf~  743 (1060)
T PLN03218        666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP--TVSTMNALITALCEGNQLPKALEVLS  743 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            322221111110               011257788888888877653  45  35667888888888888888888888


Q ss_pred             HHhcC
Q psy9159         237 KAKAI  241 (259)
Q Consensus       237 kal~l  241 (259)
                      +..+.
T Consensus       744 eM~~~  748 (1060)
T PLN03218        744 EMKRL  748 (1060)
T ss_pred             HHHHc
Confidence            76543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.32  E-value=0.00066  Score=59.36  Aligned_cols=196  Identities=14%  Similarity=0.081  Sum_probs=119.8

Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc----------cCcHH-----------HHHHHHHHHHHHH
Q psy9159          44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR----------ENDKE-----------ASEKYILQGIEYA  102 (259)
Q Consensus        44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~----------~~~~~-----------~~~~~~~~A~~~~  102 (259)
                      .|+|.+|.....+.-+..+.-.-.+..-+.+..++|+....          +++..           -..+.++.|++-.
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v  176 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV  176 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence            39999999999998887777777777778888888886521          11110           0112346666666


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHH---HHHHH--------------
Q psy9159         103 KKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLY---SLKGR--------------  165 (259)
Q Consensus       103 ~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~---~~lG~--------------  165 (259)
                      .++++..|.++.+......++...|++....       .....+.|+-.+++....-+   ...|.              
T Consensus       177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll-------~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~  249 (400)
T COG3071         177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALL-------AILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK  249 (400)
T ss_pred             HHHHHhCcCChHHHHHHHHHHHHhccHHHHH-------HHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            6666666666666666666666666554221       22344444433333211110   00000              


Q ss_pred             -H---------------------HHHhhccchHHHHHH-----------HHHhcCCCCCcHHHHHHHHHHHHhhCCCCcH
Q psy9159         166 -Y---------------------QYEISKLSFFERKIA-----------VLIVSDLDEPTAEDAIANCLKAEELAPAPWK  212 (259)
Q Consensus       166 -~---------------------~~~~~~~~~~~~~~~-----------~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~  212 (259)
                       |                     +.++++.+...+-+.           ..+++.-+.++.+.=++..++.+...| +.+
T Consensus       250 ~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~-~~p  328 (400)
T COG3071         250 TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHP-EDP  328 (400)
T ss_pred             HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCC-CCh
Confidence             0                     000111100000000           123333345778888888899999999 678


Q ss_pred             HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         213 ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       213 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      ..++.||..+.+.+.+.+|.++++.|+...|...+
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~  363 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASD  363 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh
Confidence            88999999999999999999999999999877544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.32  E-value=4.3e-05  Score=73.61  Aligned_cols=173  Identities=6%  Similarity=-0.095  Sum_probs=100.9

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh--CCCChHHHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL--APNNSNTQKWY  119 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~--~P~~~~~~~~l  119 (259)
                      .. |++++|...|++..   +.++..|..+...|...|+..              +|++.+++....  .|+ ...+..+
T Consensus       271 k~-g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~--------------eA~~lf~~M~~~g~~pd-~~t~~~l  331 (697)
T PLN03081        271 KC-GDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSE--------------EALCLYYEMRDSGVSID-QFTFSIM  331 (697)
T ss_pred             HC-CCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHH--------------HHHHHHHHHHHcCCCCC-HHHHHHH
Confidence            45 88888888888764   356778888888888888765              555555555432  232 2334444


Q ss_pred             HHHHHHhhchhhHHHHH-------------------------hcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc
Q psy9159         120 GICVGANGQFQSLKEKI-------------------------KCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS  174 (259)
Q Consensus       120 a~~~~~~~~~~~~~~~~-------------------------~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~  174 (259)
                      ..++...|.++.+.+-.                         +....|.+.+++..+  | |...|..+...|.+.++..
T Consensus       332 l~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~  408 (697)
T PLN03081        332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGT  408 (697)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHH
Confidence            44444444443222110                         111234455554432  3 4566777776676665543


Q ss_pred             hHHHHHHHH---------------HhcCCCCCcHHHHHHHHHHHHh---hCCCCcHHhHHHHHHHHHHhCCHHHHHHHHH
Q psy9159         175 FFERKIAVL---------------IVSDLDEPTAEDAIANCLKAEE---LAPAPWKENQLLIAKCYIEAGEYAKAVQWLD  236 (259)
Q Consensus       175 ~~~~~~~~~---------------~~~~~~~g~~~eAi~~~~kAi~---l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~  236 (259)
                      ...+.+...               +.+....|..++|.+.|+...+   +.|  +...|.-+..+|.+.|++++|.+.++
T Consensus       409 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~  486 (697)
T PLN03081        409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP--RAMHYACMIELLGREGLLDEAYAMIR  486 (697)
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC--CccchHhHHHHHHhcCCHHHHHHHHH
Confidence            322222211               1112236888888888888865   345  24567778888888888888888877


Q ss_pred             HH
Q psy9159         237 KA  238 (259)
Q Consensus       237 ka  238 (259)
                      +.
T Consensus       487 ~~  488 (697)
T PLN03081        487 RA  488 (697)
T ss_pred             HC
Confidence            64

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.29  E-value=8.7e-06  Score=61.79  Aligned_cols=114  Identities=16%  Similarity=0.132  Sum_probs=84.6

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHH
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND---PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKA  105 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~ka  105 (259)
                      .+++.++...+  .+ |+|++|+..|+.+....|-+   ..+-..++.+|+..+++.              +|+..+++-
T Consensus        11 ~~ly~~a~~~l--~~-~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~--------------~A~a~~~rF   73 (142)
T PF13512_consen   11 QELYQEAQEAL--QK-GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYE--------------EAIAAYDRF   73 (142)
T ss_pred             HHHHHHHHHHH--Hh-CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHH--------------HHHHHHHHH
Confidence            46788899998  67 99999999999999987754   678888999999988875              999999999


Q ss_pred             HHhCCCChHH---HHHHHHHHHHhhc--hh---hHHHHHhcHHHHHHHHHHHHccCCCChhH
Q psy9159         106 MELAPNNSNT---QKWYGICVGANGQ--FQ---SLKEKIKCGVVFRDQMNKAIQMAPKDFTL  159 (259)
Q Consensus       106 l~~~P~~~~~---~~~la~~~~~~~~--~~---~~~~~~~~~~~a~~~~~kAl~l~P~~~~~  159 (259)
                      |+++|+++.+   ++..|.+......  +.   +..........|...+++.|+.-|++.-+
T Consensus        74 irLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   74 IRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            9999999876   3334444443322  00   11111222446778888999999987643

>KOG4642|consensus

Probab=98.28  E-value=3.5e-06  Score=68.74  Aligned_cols=85  Identities=15%  Similarity=0.204  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhh
Q psy9159          92 EKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEIS  171 (259)
Q Consensus        92 ~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~  171 (259)
                      -+.+..|+..|.++|.++|+.+..+.+-+.++..+.+++          .....-.+|++++||...+++.+|.|..++ 
T Consensus        23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~----------~v~~dcrralql~~N~vk~h~flg~~~l~s-   91 (284)
T KOG4642|consen   23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWE----------PVEEDCRRALQLDPNLVKAHYFLGQWLLQS-   91 (284)
T ss_pred             hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhh----------hhhhhHHHHHhcChHHHHHHHHHHHHHHhh-
Confidence            345679999999999999999999999999998887776          345677999999999999999999999875 


Q ss_pred             ccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q psy9159         172 KLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL  206 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l  206 (259)
                                         ..|.+||.++++|.++
T Consensus        92 -------------------~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   92 -------------------KGYDEAIKVLQRAYSL  107 (284)
T ss_pred             -------------------ccccHHHHHHHHHHHH
Confidence                               6689999999999776

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.27  E-value=6.3e-07  Score=51.12  Aligned_cols=25  Identities=20%  Similarity=0.309  Sum_probs=23.4

Q ss_pred             HHHHHccCCCChhHHHHHHHHHHHh
Q psy9159         146 MNKAIQMAPKDFTLYSLKGRYQYEI  170 (259)
Q Consensus       146 ~~kAl~l~P~~~~~~~~lG~~~~~~  170 (259)
                      |+|||+++|+|+.+|+.||.++...
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~   26 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQ   26 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHC
Confidence            6899999999999999999999875

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.24  E-value=2.3e-06  Score=51.81  Aligned_cols=43  Identities=19%  Similarity=0.282  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159          65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI  121 (259)
Q Consensus        65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~  121 (259)
                      |+++..+|.+|...|+..              +|+..++++++.+|+|+.+|..+|.
T Consensus         1 p~~~~~la~~~~~~G~~~--------------~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPD--------------EAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            478899999999999975              9999999999999999999988775

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.24  E-value=2.2e-05  Score=65.51  Aligned_cols=104  Identities=13%  Similarity=0.036  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh---hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCc
Q psy9159         116 QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF---TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPT  192 (259)
Q Consensus       116 ~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~---~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~  192 (259)
                      .+..|.-+...|++.          .|...|..-|+.-|++.   +++|+||..++.+                    |+
T Consensus       144 ~Y~~A~~~~ksgdy~----------~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~q--------------------g~  193 (262)
T COG1729         144 LYNAALDLYKSGDYA----------EAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQ--------------------GD  193 (262)
T ss_pred             HHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCcccchhHHHHHHHHHhc--------------------cc
Confidence            455666666666665          45677788888888854   8999999999885                    88


Q ss_pred             HHHHHHHHHHHHhhCCCCc---HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchh
Q psy9159         193 AEDAIANCLKAEELAPAPW---KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHD  250 (259)
Q Consensus       193 ~~eAi~~~~kAi~l~P~~~---~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~  250 (259)
                      |++|...|..+++-.| +.   +++++-||.|+..+|+.++|...|+++++--|+++-.+.
T Consensus       194 y~~Aa~~f~~~~k~~P-~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         194 YEDAAYIFARVVKDYP-KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             chHHHHHHHHHHHhCC-CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            9999999999999988 44   467999999999999999999999999999999876543

>PLN03077 Protein ECB2; Provisional

Probab=98.23  E-value=8.5e-05  Score=73.27  Aligned_cols=166  Identities=13%  Similarity=0.035  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH--hCCCChHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME--LAPNNSNTQKWYGIC  122 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~--~~P~~~~~~~~la~~  122 (259)
                      |+.++|...|++.    +.+...|..+...|...|+..              +|++.+++..+  +.|+... +..+-..
T Consensus       538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~--------------~A~~lf~~M~~~g~~Pd~~T-~~~ll~a  598 (857)
T PLN03077        538 GRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGS--------------MAVELFNRMVESGVNPDEVT-FISLLCA  598 (857)
T ss_pred             CCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHH--------------HHHHHHHHHHHcCCCCCccc-HHHHHHH
Confidence            8888888888876    456778888888888888764              67777776655  3454433 2222233


Q ss_pred             HHHhhchhhHHHHHhcHHHHHHHHHHHH---ccCCCChhHHHHHHHHHHHhhccchHHHHHHHH------------HhcC
Q psy9159         123 VGANGQFQSLKEKIKCGVVFRDQMNKAI---QMAPKDFTLYSLKGRYQYEISKLSFFERKIAVL------------IVSD  187 (259)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~a~~~~~kAl---~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~------------~~~~  187 (259)
                      +...|..+          ++.+.++...   .+.|+- ..|..+...+.+.|+++...+.+...            +.+.
T Consensus       599 ~~~~g~v~----------ea~~~f~~M~~~~gi~P~~-~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac  667 (857)
T PLN03077        599 CSRSGMVT----------QGLEYFHSMEEKYSITPNL-KHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC  667 (857)
T ss_pred             HhhcChHH----------HHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence            44444443          2334444433   233332 44555555555554443322222110            0000


Q ss_pred             CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         188 LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       188 ~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                      ...|+.+.+....++.++++| ++...|..|+++|...|++++|.+..+.-.+.
T Consensus       668 ~~~~~~e~~e~~a~~l~~l~p-~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~  720 (857)
T PLN03077        668 RIHRHVELGELAAQHIFELDP-NSVGYYILLCNLYADAGKWDEVARVRKTMREN  720 (857)
T ss_pred             HHcCChHHHHHHHHHHHhhCC-CCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence            013778888888888999999 67788888899999999999998888776553

>PLN03077 Protein ECB2; Provisional

Probab=98.20  E-value=0.0001  Score=72.76  Aligned_cols=127  Identities=16%  Similarity=0.137  Sum_probs=88.7

Q ss_pred             cCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh---CCCChHHHHH
Q psy9159          44 KDDKAKAYNLTMELNNK--QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL---APNNSNTQKW  118 (259)
Q Consensus        44 ~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~---~P~~~~~~~~  118 (259)
                      .|+.++|+++|+++.+.  .|+... +..+-.+|...|...              +|..+++...+.   .|+ ...+..
T Consensus       567 ~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~--------------ea~~~f~~M~~~~gi~P~-~~~y~~  630 (857)
T PLN03077        567 HGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVT--------------QGLEYFHSMEEKYSITPN-LKHYAC  630 (857)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHH--------------HHHHHHHHHHHHhCCCCc-hHHHHH
Confidence            39999999999998773  576654 444555677777654              777777766643   332 244555


Q ss_pred             HHHHHHHhhchhhHHHHHhcH----------------------HHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchH
Q psy9159         119 YGICVGANGQFQSLKEKIKCG----------------------VVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFF  176 (259)
Q Consensus       119 la~~~~~~~~~~~~~~~~~~~----------------------~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~  176 (259)
                      +..++++.|+.+.+.+.++..                      ..+....+++++++|+++..|..++.+|...      
T Consensus       631 lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~------  704 (857)
T PLN03077        631 VVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA------  704 (857)
T ss_pred             HHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHC------
Confidence            666667777666554433221                      2334567788999999999999999988764      


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q psy9159         177 ERKIAVLIVSDLDEPTAEDAIANCLKAEEL  206 (259)
Q Consensus       177 ~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l  206 (259)
                                    |++++|.+..+...+.
T Consensus       705 --------------g~~~~a~~vr~~M~~~  720 (857)
T PLN03077        705 --------------GKWDEVARVRKTMREN  720 (857)
T ss_pred             --------------CChHHHHHHHHHHHHc
Confidence                          8899999999888765

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.17  E-value=5.3e-06  Score=50.16  Aligned_cols=43  Identities=16%  Similarity=0.037  Sum_probs=38.3

Q ss_pred             hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHH
Q psy9159         157 FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAK  220 (259)
Q Consensus       157 ~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~  220 (259)
                      |.+|..+|.+|...                    |++++|++.|+++++.+| +++.+|..||.
T Consensus         1 p~~~~~la~~~~~~--------------------G~~~~A~~~~~~~l~~~P-~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRL--------------------GQPDEAERLLRRALALDP-DDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHCc-CCHHHHHHhhh
Confidence            46788999988875                    889999999999999999 78999998885

>KOG1915|consensus

Probab=98.16  E-value=0.00035  Score=62.49  Aligned_cols=185  Identities=12%  Similarity=0.067  Sum_probs=131.9

Q ss_pred             CCHHHHHH-----HHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Q psy9159          45 DDKAKAYN-----LTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWY  119 (259)
Q Consensus        45 ~~~~~A~~-----~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~l  119 (259)
                      .-.++++.     .|+..+..+|-|-+.|+-.-+.-...|+..              .-.+.|++||.--|...+--+|-
T Consensus       297 ~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~--------------~Ire~yErAIanvpp~~ekr~W~  362 (677)
T KOG1915|consen  297 EGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKD--------------RIRETYERAIANVPPASEKRYWR  362 (677)
T ss_pred             hhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHH--------------HHHHHHHHHHccCCchhHHHHHH
Confidence            34555554     488899999999999987777766666543              77889999999988765543333


Q ss_pred             HHHH--HHhhchhhHHHHHhcHHHHHHHHHHHHccCCC----ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC----
Q psy9159         120 GICV--GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK----DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD----  189 (259)
Q Consensus       120 a~~~--~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~----~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~----  189 (259)
                      -.++  ....-++...  ..+.....+.|+.+|++-|.    .+..|.+.+.+..+..++....+.++.++--+|.    
T Consensus       363 RYIYLWinYalyeEle--~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlF  440 (677)
T KOG1915|consen  363 RYIYLWINYALYEELE--AEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLF  440 (677)
T ss_pred             HHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHH
Confidence            2222  2222232221  22334567889999999996    4456777776666655555555555544322221    


Q ss_pred             ---------CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         190 ---------EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       190 ---------~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                               .+.++.....|++-++-.| .+..+|...|..-..+|+.+.|...|.-|++.+..+.
T Consensus       441 k~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm  505 (677)
T KOG1915|consen  441 KGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM  505 (677)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence                     5889999999999999999 7889999999999999999999999999999875443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.12  E-value=4.6e-06  Score=47.15  Aligned_cols=34  Identities=21%  Similarity=0.472  Sum_probs=30.4

Q ss_pred             HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159         212 KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       212 ~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~  245 (259)
                      +.+++.+|.++..+|++++|+++|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3578999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.11  E-value=3.5e-06  Score=47.83  Aligned_cols=34  Identities=18%  Similarity=0.419  Sum_probs=30.2

Q ss_pred             HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159         212 KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       212 ~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~  245 (259)
                      +.+|+++|.+|..+|++++|++.|++|++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3578999999999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4642|consensus

Probab=98.10  E-value=7.3e-06  Score=66.92  Aligned_cols=95  Identities=12%  Similarity=0.045  Sum_probs=80.4

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA  109 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~  109 (259)
                      .+-+++..+|  .. .+|..|++.|.++|..+|..+..+-+.+.+++++.++.              ....-+++|++++
T Consensus        12 qlkE~gnk~f--~~-k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~--------------~v~~dcrralql~   74 (284)
T KOG4642|consen   12 QLKEQGNKCF--IP-KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWE--------------PVEEDCRRALQLD   74 (284)
T ss_pred             HHHhcccccc--ch-hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhh--------------hhhhhHHHHHhcC
Confidence            3456677888  56 89999999999999999999999999999999977764              8899999999999


Q ss_pred             CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc
Q psy9159         110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ  151 (259)
Q Consensus       110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~  151 (259)
                      |+...+++.+|..+.....+..          ++..+.+|..
T Consensus        75 ~N~vk~h~flg~~~l~s~~~~e----------aI~~Lqra~s  106 (284)
T KOG4642|consen   75 PNLVKAHYFLGQWLLQSKGYDE----------AIKVLQRAYS  106 (284)
T ss_pred             hHHHHHHHHHHHHHHhhccccH----------HHHHHHHHHH
Confidence            9999999999999888777763          4455566643

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.08  E-value=4.1e-05  Score=65.64  Aligned_cols=54  Identities=28%  Similarity=0.283  Sum_probs=41.5

Q ss_pred             CcHHHHHHHHHHHHhhC-----CCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         191 PTAEDAIANCLKAEELA-----PAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~-----P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      |++++|+++|++|+++-     |..-...+..+|.++..+|++++|++.|+++....-.
T Consensus       129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~  187 (282)
T PF14938_consen  129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE  187 (282)
T ss_dssp             --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence            78999999999999973     1111345788999999999999999999999876533

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.06  E-value=8.8e-05  Score=61.97  Aligned_cols=107  Identities=18%  Similarity=0.168  Sum_probs=91.6

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND---PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME  107 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~  107 (259)
                      .+..+-.++  .+ |+|.+|.+.|..-++.+|++   +.++|.||.+++.+|++.              +|...|..++.
T Consensus       144 ~Y~~A~~~~--ks-gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~--------------~Aa~~f~~~~k  206 (262)
T COG1729         144 LYNAALDLY--KS-GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYE--------------DAAYIFARVVK  206 (262)
T ss_pred             HHHHHHHHH--Hc-CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccch--------------HHHHHHHHHHH
Confidence            467777777  67 99999999999999999987   688999999999999876              99999999999


Q ss_pred             hCCCCh---HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHH
Q psy9159         108 LAPNNS---NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKG  164 (259)
Q Consensus       108 ~~P~~~---~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG  164 (259)
                      -.|+++   ++++-+|.++..+++.+          +|+..|++.++--|+...+.....
T Consensus       207 ~~P~s~KApdallKlg~~~~~l~~~d----------~A~atl~qv~k~YP~t~aA~~Ak~  256 (262)
T COG1729         207 DYPKSPKAPDALLKLGVSLGRLGNTD----------EACATLQQVIKRYPGTDAAKLAKV  256 (262)
T ss_pred             hCCCCCCChHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHCCCCHHHHHHHH
Confidence            888865   66888999999998876          678999999999999887765443

>KOG2796|consensus

Probab=98.04  E-value=0.00061  Score=56.77  Aligned_cols=132  Identities=8%  Similarity=0.018  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC--ChhHHHHHHHHHHHhhc
Q psy9159          96 LQGIEYAKKAMELA-PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK--DFTLYSLKGRYQYEISK  172 (259)
Q Consensus        96 ~~A~~~~~kal~~~-P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~--~~~~~~~lG~~~~~~~~  172 (259)
                      .-....+.+.++.+ |..+.....+|.+..+.|+..+++.-.+..+      +.+=+++.-  +..++.+.+.++.-   
T Consensus       194 ~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve------k~~~kL~~~q~~~~V~~n~a~i~lg---  264 (366)
T KOG2796|consen  194 VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE------KVTQKLDGLQGKIMVLMNSAFLHLG---  264 (366)
T ss_pred             hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH------HHHhhhhccchhHHHHhhhhhheec---
Confidence            36778888888888 5566556667777777777765432222111      111222221  11223333333221   


Q ss_pred             cchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         173 LSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                                       ++++.+|...|.+.+..|| .++.+-.+-|.|++-+|+..+|++-++.+++..|...-..-++
T Consensus       265 -----------------~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~  326 (366)
T KOG2796|consen  265 -----------------QNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVL  326 (366)
T ss_pred             -----------------ccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHH
Confidence                             3778999999999999999 7788888899999999999999999999999999877666554


Q ss_pred             hh
Q psy9159         253 TT  254 (259)
Q Consensus       253 ~~  254 (259)
                      +|
T Consensus       327 ~n  328 (366)
T KOG2796|consen  327 FN  328 (366)
T ss_pred             HH
Confidence            44

>KOG1915|consensus

Probab=98.04  E-value=0.00028  Score=63.15  Aligned_cols=95  Identities=8%  Similarity=0.021  Sum_probs=71.6

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      +++..|.+.+++++..+-.+...|...+.+-+.....              .-|.....+|+.+=|.-...|+-+-.+-.
T Consensus        87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~v--------------NhARNv~dRAvt~lPRVdqlWyKY~ymEE  152 (677)
T KOG1915|consen   87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQV--------------NHARNVWDRAVTILPRVDQLWYKYIYMEE  152 (677)
T ss_pred             HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhH--------------hHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            7889999999999999999999998877766654443              38888889999999988887777777666


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHH
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKG  164 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG  164 (259)
                      .+|+..++          .+.+++=++..|+. .+|...-
T Consensus       153 ~LgNi~ga----------RqiferW~~w~P~e-qaW~sfI  181 (677)
T KOG1915|consen  153 MLGNIAGA----------RQIFERWMEWEPDE-QAWLSFI  181 (677)
T ss_pred             HhcccHHH----------HHHHHHHHcCCCcH-HHHHHHH
Confidence            77777653          46667777777764 4444433

>KOG3785|consensus

Probab=98.04  E-value=0.00029  Score=60.99  Aligned_cols=133  Identities=12%  Similarity=0.052  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHhCCCCh-HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccch
Q psy9159          97 QGIEYAKKAMELAPNNS-NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF  175 (259)
Q Consensus        97 ~A~~~~~kal~~~P~~~-~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~  175 (259)
                      .|+..++-.+..+.+.- ..-.|+|.|+.++|++.          +|...|+-+.+-+.-+...+..|+-+++-++.+..
T Consensus        40 GAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~----------~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   40 GAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYE----------EALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             hHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHH----------HHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence            66666666665554433 56789999999999998          45567777777777777889999988877765433


Q ss_pred             HHHHHH---------HHHhcC-CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         176 FERKIA---------VLIVSD-LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       176 ~~~~~~---------~~~~~~-~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      ......         .++++. -..|+ ++-+.-|...++    +..+-.+.||.+....-.+++|++.|++++.-+|.
T Consensus       110 A~~~~~ka~k~pL~~RLlfhlahklnd-Ek~~~~fh~~Lq----D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e  183 (557)
T KOG3785|consen  110 AKSIAEKAPKTPLCIRLLFHLAHKLND-EKRILTFHSSLQ----DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE  183 (557)
T ss_pred             HHHHHhhCCCChHHHHHHHHHHHHhCc-HHHHHHHHHHHh----hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            332221         111111 01233 333445555544    33456788888888888999999999999988765

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.02  E-value=0.0002  Score=61.31  Aligned_cols=135  Identities=13%  Similarity=0.021  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhc
Q psy9159          93 KYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISK  172 (259)
Q Consensus        93 ~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~  172 (259)
                      +-.+.|+..|++|++..+....+|...|.+-...++...         .|...|+++++..|.+..+|.....++...  
T Consensus        15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~---------~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~--   83 (280)
T PF05843_consen   15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPK---------RARKIFERGLKKFPSDPDFWLEYLDFLIKL--   83 (280)
T ss_dssp             HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HH---------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT--
T ss_pred             CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHH---------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHh--
Confidence            345799999999997777788888877777555443321         478999999999999999999998877664  


Q ss_pred             cchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcH---HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159         173 LSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWK---ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~---~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~  249 (259)
                                        |+.+.|...|++++..-| ...   ..|......=...|+.+...+..+++.+.-|.+..-.
T Consensus        84 ------------------~d~~~aR~lfer~i~~l~-~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~  144 (280)
T PF05843_consen   84 ------------------NDINNARALFERAISSLP-KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE  144 (280)
T ss_dssp             ------------------T-HHHHHHHHHHHCCTSS-CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred             ------------------CcHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence                              779999999999999877 333   4677778888888999999999999999988866555


Q ss_pred             hhhhhhcc
Q psy9159         250 DLSTTYSY  257 (259)
Q Consensus       250 ~~~~~~~~  257 (259)
                      .....|++
T Consensus       145 ~f~~ry~~  152 (280)
T PF05843_consen  145 LFSDRYSF  152 (280)
T ss_dssp             HHHCCT-B
T ss_pred             HHHHHhhc
Confidence            55555544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0376|consensus

Probab=98.00  E-value=1.1e-05  Score=71.96  Aligned_cols=113  Identities=20%  Similarity=0.106  Sum_probs=96.8

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      ++.-.+++.++  .. ..|+.|+.+|.++|+++|+++..+-+.+.++...+++.              .|+.-+.+|+++
T Consensus         5 ~e~k~ean~~l--~~-~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~--------------~Al~Da~kaie~   67 (476)
T KOG0376|consen    5 EELKNEANEAL--KD-KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFG--------------GALHDALKAIEL   67 (476)
T ss_pred             hhhhhHHhhhc--cc-chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhh--------------hHHHHHHhhhhc
Confidence            34557788888  66 99999999999999999999999888888888887765              999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHH
Q psy9159         109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQY  168 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~  168 (259)
                      +|....+++.-|.+...++.+.          ++...|++...+.|+++.+.-.+-.+-.
T Consensus        68 dP~~~K~Y~rrg~a~m~l~~~~----------~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   68 DPTYIKAYVRRGTAVMALGEFK----------KALLDLEKVKKLAPNDPDATRKIDECNK  117 (476)
T ss_pred             CchhhheeeeccHHHHhHHHHH----------HHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence            9999999888888877777665          5678889999999999988877776543

>KOG4555|consensus

Probab=98.00  E-value=0.00012  Score=54.57  Aligned_cols=98  Identities=17%  Similarity=0.122  Sum_probs=80.4

Q ss_pred             HHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHH
Q psy9159         119 YGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIA  198 (259)
Q Consensus       119 la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~  198 (259)
                      -|+.+...|+..          .+++.|.++|.+-|..+++|.+.+..+.-                    +|+.++|++
T Consensus        49 ~~valaE~g~Ld----------~AlE~F~qal~l~P~raSayNNRAQa~RL--------------------q~~~e~ALd   98 (175)
T KOG4555|consen   49 KAIALAEAGDLD----------GALELFGQALCLAPERASAYNNRAQALRL--------------------QGDDEEALD   98 (175)
T ss_pred             HHHHHHhccchH----------HHHHHHHHHHHhcccchHhhccHHHHHHH--------------------cCChHHHHH
Confidence            355566666665          46788999999999999999999986643                    488999999


Q ss_pred             HHHHHHhhCCCCc---HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         199 NCLKAEELAPAPW---KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       199 ~~~kAi~l~P~~~---~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      -+.+|+++.....   ..++...|.+|..+|+-+.|...|+.|.++.....
T Consensus        99 DLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA  149 (175)
T KOG4555|consen   99 DLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA  149 (175)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence            9999999975232   24589999999999999999999999998876544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.96  E-value=0.0013  Score=60.41  Aligned_cols=196  Identities=17%  Similarity=0.169  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhccCCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhh--chhc
Q psy9159           6 FVLSLFQFAFVQFGECAELFAVNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLY--DIKR   83 (259)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g--~~~~   83 (259)
                      ++.+-..|+++.+.-+-...   ++.+.+.-.++  |=.|+-+.++..+.++.+. ++=-..+..+...-+...  ... 
T Consensus       168 ~~~sgv~~G~G~f~L~lSlL---Pp~~~kll~~v--GF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~-  240 (468)
T PF10300_consen  168 FFESGVYFGFGLFNLVLSLL---PPKVLKLLSFV--GFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFL-  240 (468)
T ss_pred             HHHHhHHHHHHHHHHHHHhC---CHHHHHHHhhc--CcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHc-
Confidence            45555556666655554433   34555666666  5459999999999999772 222222222222211111  000 


Q ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC----ChhH
Q psy9159          84 RENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK----DFTL  159 (259)
Q Consensus        84 ~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~----~~~~  159 (259)
                         +.+......+.+.+.++...+..|+.+...+..|.+....|+.+          .|++.+++++.....    +...
T Consensus       241 ---~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~----------~Ai~~~~~a~~~q~~~~Ql~~l~  307 (468)
T PF10300_consen  241 ---GIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLE----------EAIESFERAIESQSEWKQLHHLC  307 (468)
T ss_pred             ---CCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHH----------HHHHHHHHhccchhhHHhHHHHH
Confidence               00001223568999999999999999888888899998888887          456777777643322    2234


Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHh--HHHHHHHHHHhCCH-------HH
Q psy9159         160 YSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKEN--QLLIAKCYIEAGEY-------AK  230 (259)
Q Consensus       160 ~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~--~~~la~~~~~~g~~-------~e  230 (259)
                      ++.+|.++...                    .+|++|..+|.+.++.+.  |+.+  .+..|.|+..+|+.       ++
T Consensus       308 ~~El~w~~~~~--------------------~~w~~A~~~f~~L~~~s~--WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~  365 (468)
T PF10300_consen  308 YFELAWCHMFQ--------------------HDWEEAAEYFLRLLKESK--WSKAFYAYLAAACLLMLGREEEAKEHKKE  365 (468)
T ss_pred             HHHHHHHHHHH--------------------chHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHhhccchhhhhhHHH
Confidence            55566555443                    789999999999999875  5554  45578999999999       99


Q ss_pred             HHHHHHHHhcCCC
Q psy9159         231 AVQWLDKAKAIPV  243 (259)
Q Consensus       231 A~~~~~kal~l~p  243 (259)
                      |.++++++-.+-.
T Consensus       366 a~~l~~~vp~l~~  378 (468)
T PF10300_consen  366 AEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998866544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.94  E-value=0.0011  Score=58.54  Aligned_cols=186  Identities=16%  Similarity=0.138  Sum_probs=107.9

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTME-LNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~-~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      +-+-.+.+....|+.++|++.+.. .....+.+++++..+|++|-++-...    . .......++|+.+|.++.+++|+
T Consensus       184 ~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s----~-~~d~~~ldkAi~~Y~kgFe~~~~  258 (374)
T PF13281_consen  184 QYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLES----N-FTDRESLDKAIEWYRKGFEIEPD  258 (374)
T ss_pred             HHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHc----C-ccchHHHHHHHHHHHHHHcCCcc
Confidence            334445421113999999999999 67788999999999999998764321    0 01233488999999999999998


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHH-HHHHHH-HHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGV-VFRDQM-NKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD  189 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~-~a~~~~-~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~  189 (259)
                      ...+. +++.++...|+.......+.... +....+ ++-. +++ ...+| ..| .+++..           .+     
T Consensus       259 ~Y~GI-N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~-~~~-~~dYW-d~A-Tl~Ea~-----------vL-----  317 (374)
T PF13281_consen  259 YYSGI-NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS-LEK-MQDYW-DVA-TLLEAS-----------VL-----  317 (374)
T ss_pred             ccchH-HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc-ccc-cccHH-HHH-HHHHHH-----------HH-----
Confidence            77775 56666666665322111111100 000111 1110 111 11111 111 122210           01     


Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhhhhcc
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLSTTYSY  257 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~~~~~  257 (259)
                      .|++++|+.++++++.+.|..    |. +..       +-+=+..+..+...... +..++-+++||-
T Consensus       318 ~~d~~ka~~a~e~~~~l~~~~----W~-l~S-------t~~ni~Li~~~~~~~~~-~~~~~~~~~fW~  372 (374)
T PF13281_consen  318 AGDYEKAIQAAEKAFKLKPPA----WE-LES-------TLENIKLIRHFRKRPEE-PSPKQQLFNFWM  372 (374)
T ss_pred             cCCHHHHHHHHHHHhhcCCcc----hh-HHH-------HHHHHHHHHHHhcCCCC-CCchhhhcchhh
Confidence            389999999999999999832    32 222       33345566666554444 777777788874

>KOG0376|consensus

Probab=97.94  E-value=9.1e-06  Score=72.41  Aligned_cols=88  Identities=23%  Similarity=0.310  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHH
Q psy9159         141 VFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAK  220 (259)
Q Consensus       141 ~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~  220 (259)
                      .+...|.|||+++||.+.++-..+..+...                    +++..|+.-+.+|++++| ....+|+..|.
T Consensus        22 ~avdlysKaI~ldpnca~~~anRa~a~lK~--------------------e~~~~Al~Da~kaie~dP-~~~K~Y~rrg~   80 (476)
T KOG0376|consen   22 VAVDLYSKAIELDPNCAIYFANRALAHLKV--------------------ESFGGALHDALKAIELDP-TYIKAYVRRGT   80 (476)
T ss_pred             HHHHHHHHHHhcCCcceeeechhhhhheee--------------------chhhhHHHHHHhhhhcCc-hhhheeeeccH
Confidence            567899999999999999999888777664                    789999999999999999 78999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159         221 CYIEAGEYAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       221 ~~~~~g~~~eA~~~~~kal~l~p~~~~~~  249 (259)
                      +.+.++++.+|...|++...+.|.++.-+
T Consensus        81 a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~  109 (476)
T KOG0376|consen   81 AVMALGEFKKALLDLEKVKKLAPNDPDAT  109 (476)
T ss_pred             HHHhHHHHHHHHHHHHHhhhcCcCcHHHH
Confidence            99999999999999999999999887644

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.90  E-value=0.00089  Score=60.37  Aligned_cols=165  Identities=13%  Similarity=0.117  Sum_probs=105.1

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC----------
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN----------  111 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~----------  111 (259)
                      .. .+.++-+++-+++++.+|+.+++|..||.=-..         ...+....+.+|++.-+..+..+..          
T Consensus       180 RE-Rnp~aRIkaA~eALei~pdCAdAYILLAEEeA~---------Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~  249 (539)
T PF04184_consen  180 RE-RNPQARIKAAKEALEINPDCADAYILLAEEEAS---------TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA  249 (539)
T ss_pred             hc-CCHHHHHHHHHHHHHhhhhhhHHHhhccccccc---------CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence            44 789999999999999999999998777642211         1234556666777766666655431          


Q ss_pred             ------C--hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC--ChhHHHHHHHHHHHhhccchHHHHHH
Q psy9159         112 ------N--SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK--DFTLYSLKGRYQYEISKLSFFERKIA  181 (259)
Q Consensus       112 ------~--~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~--~~~~~~~lG~~~~~~~~~~~~~~~~~  181 (259)
                            +  .-+...+|++..++|...          +|++.++..++.+|.  +..++.+|-.++.++           
T Consensus       250 ~~~Rdt~~~~y~KrRLAmCarklGr~~----------EAIk~~rdLlke~p~~~~l~IrenLie~LLel-----------  308 (539)
T PF04184_consen  250 WHRRDTNVLVYAKRRLAMCARKLGRLR----------EAIKMFRDLLKEFPNLDNLNIRENLIEALLEL-----------  308 (539)
T ss_pred             hhccccchhhhhHHHHHHHHHHhCChH----------HHHHHHHHHHhhCCccchhhHHHHHHHHHHhc-----------
Confidence                  0  122344555555555544          678888999988886  557899999999886           


Q ss_pred             HHHhcCCCCCcHHHHHHHHHHHHhhC-CCCcHHhHHHHHHHHHH-hCC---------------HHHHHHHHHHHhcCCCC
Q psy9159         182 VLIVSDLDEPTAEDAIANCLKAEELA-PAPWKENQLLIAKCYIE-AGE---------------YAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       182 ~~~~~~~~~g~~~eAi~~~~kAi~l~-P~~~~~~~~~la~~~~~-~g~---------------~~eA~~~~~kal~l~p~  244 (259)
                               ++|.++...+.|=-++. | ......+.-|....+ .++               -..|++..++|++.+|+
T Consensus       309 ---------q~Yad~q~lL~kYdDi~lp-kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH  378 (539)
T PF04184_consen  309 ---------QAYADVQALLAKYDDISLP-KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH  378 (539)
T ss_pred             ---------CCHHHHHHHHHHhccccCC-chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence                     55666666665543331 3 222222222222111 122               23578999999999999


Q ss_pred             Ccc
Q psy9159         245 SYE  247 (259)
Q Consensus       245 ~~~  247 (259)
                      -+.
T Consensus       379 Vp~  381 (539)
T PF04184_consen  379 VPK  381 (539)
T ss_pred             Cch
Confidence            874

The molecular function of this protein is uncertain.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.90  E-value=0.00034  Score=53.16  Aligned_cols=106  Identities=14%  Similarity=-0.040  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh---hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCC
Q psy9159         114 NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF---TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDE  190 (259)
Q Consensus       114 ~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~---~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (259)
                      ..++.-|......|++.          .|.+.++....-.|-.+   .+...||..|+..                    
T Consensus        11 ~~ly~~a~~~l~~~~Y~----------~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~--------------------   60 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYE----------EAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ--------------------   60 (142)
T ss_pred             HHHHHHHHHHHHhCCHH----------HHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc--------------------
Confidence            34566666666777776          45667777777777654   6788899988874                    


Q ss_pred             CcHHHHHHHHHHHHhhCCCCc--HHhHHHHHHHHHHhCC---------------HHHHHHHHHHHhcCCCCCccch
Q psy9159         191 PTAEDAIANCLKAEELAPAPW--KENQLLIAKCYIEAGE---------------YAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~--~~~~~~la~~~~~~g~---------------~~eA~~~~~kal~l~p~~~~~~  249 (259)
                      +++++|+..+++-|+++|++.  ..+++..|.+++.+..               ..+|...|++.+..-|++.-..
T Consensus        61 ~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~  136 (142)
T PF13512_consen   61 GDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA  136 (142)
T ss_pred             cCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence            889999999999999999442  2468889999999987               8999999999999999886543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.89  E-value=0.00065  Score=67.29  Aligned_cols=157  Identities=15%  Similarity=0.156  Sum_probs=107.2

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC----
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDP-----DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN----  112 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~----  112 (259)
                      .. |++++|...+++++...|...     .++..+|.++...|++.              +|...+++++......    
T Consensus       464 ~~-g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~--------------~A~~~~~~al~~~~~~g~~~  528 (903)
T PRK04841        464 ND-GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA--------------RALAMMQQTEQMARQHDVYH  528 (903)
T ss_pred             hC-CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHHhhhcchH
Confidence            45 999999999999988555432     23455677777777654              8888888887654332    


Q ss_pred             --hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccC-----CC---ChhHHHHHHHHHHHhhccchHHHHHHH
Q psy9159         113 --SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMA-----PK---DFTLYSLKGRYQYEISKLSFFERKIAV  182 (259)
Q Consensus       113 --~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~-----P~---~~~~~~~lG~~~~~~~~~~~~~~~~~~  182 (259)
                        ..++..+|.++...|++..+          ...+++++.+-     +.   ....+..+|.++...            
T Consensus       529 ~~~~~~~~la~~~~~~G~~~~A----------~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------------  586 (903)
T PRK04841        529 YALWSLLQQSEILFAQGFLQAA----------YETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW------------  586 (903)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHH----------HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh------------
Confidence              12345567777777877744          44445554431     11   223345666666553            


Q ss_pred             HHhcCCCCCcHHHHHHHHHHHHhhCC----CCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159         183 LIVSDLDEPTAEDAIANCLKAEELAP----APWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV  243 (259)
Q Consensus       183 ~~~~~~~~g~~~eAi~~~~kAi~l~P----~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p  243 (259)
                              |++++|..++.+++.+..    ......+..+|.++...|++++|.+.+.++..+.+
T Consensus       587 --------G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        587 --------ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             --------cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence                    889999999999988632    12244567789999999999999999999977643

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.88  E-value=1.5e-05  Score=54.32  Aligned_cols=68  Identities=18%  Similarity=0.232  Sum_probs=50.6

Q ss_pred             CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHcc----CCCC---hhHHHHHHHHHHHhhccchHHHHHHH
Q psy9159         110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM----APKD---FTLYSLKGRYQYEISKLSFFERKIAV  182 (259)
Q Consensus       110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l----~P~~---~~~~~~lG~~~~~~~~~~~~~~~~~~  182 (259)
                      |+-+.++.++|.++...|++.          +|+..+++++++    .|++   +.++..+|.++...            
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~------------   59 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYD----------EALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRL------------   59 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HH----------HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHT------------
T ss_pred             HHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc------------
Confidence            344567889999999999988          456677777654    2232   45678888888775            


Q ss_pred             HHhcCCCCCcHHHHHHHHHHHHhhC
Q psy9159         183 LIVSDLDEPTAEDAIANCLKAEELA  207 (259)
Q Consensus       183 ~~~~~~~~g~~~eAi~~~~kAi~l~  207 (259)
                              |++++|++++++|+++.
T Consensus        60 --------g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen   60 --------GDYEEALEYYQKALDIF   76 (78)
T ss_dssp             --------THHHHHHHHHHHHHHHH
T ss_pred             --------CCHHHHHHHHHHHHhhh
Confidence                    88999999999999863

...

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.87  E-value=0.0012  Score=54.83  Aligned_cols=152  Identities=17%  Similarity=0.185  Sum_probs=111.1

Q ss_pred             CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHhhchhhHHHHHhcHH
Q psy9159          64 DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNT---QKWYGICVGANGQFQSLKEKIKCGV  140 (259)
Q Consensus        64 ~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~---~~~la~~~~~~~~~~~~~~~~~~~~  140 (259)
                      .++.|+.-|..-.+.|++.              +|...+++.....|..+.+   ...++.+..+.+++.          
T Consensus        33 p~~~LY~~g~~~L~~gn~~--------------~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~----------   88 (254)
T COG4105          33 PASELYNEGLTELQKGNYE--------------EAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYD----------   88 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHH--------------HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHH----------
Confidence            3566677777777777765              9999999999999998765   334455555555555          


Q ss_pred             HHHHHHHHHHccCCCChhH---HHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHh---
Q psy9159         141 VFRDQMNKAIQMAPKDFTL---YSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKEN---  214 (259)
Q Consensus       141 ~a~~~~~kAl~l~P~~~~~---~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~---  214 (259)
                      .|....++-+.+.|+++++   ++..|..++..-+  ...|          .+....+|+..|+..++--| +...+   
T Consensus        89 ~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~--~~~r----------Dq~~~~~A~~~f~~~i~ryP-nS~Ya~dA  155 (254)
T COG4105          89 LALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID--DVTR----------DQSAARAAFAAFKELVQRYP-NSRYAPDA  155 (254)
T ss_pred             HHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC--cccc----------CHHHHHHHHHHHHHHHHHCC-CCcchhhH
Confidence            5677888999999999864   6778877655422  1111          12335788899999999888 43111   


Q ss_pred             --------------HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         215 --------------QLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       215 --------------~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                                    =+.+|..|.+.|.+-.|+.-++.+++--|++...++.+
T Consensus       156 ~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL  207 (254)
T COG4105         156 KARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREAL  207 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHH
Confidence                          15678899999999999999999999998888776654

>KOG1130|consensus

Probab=97.87  E-value=0.00017  Score=63.49  Aligned_cols=192  Identities=12%  Similarity=0.074  Sum_probs=95.9

Q ss_pred             CCHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhhchhccc--Cc----HHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          45 DDKAKAYNLTMELNNK------QPNDPDVLYRLAKACHCLYDIKRRE--ND----KEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~g~~~~~~--~~----~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      |.|++|+-...+-+..      ---..-++|++|.+|...|+....+  .+    .++....++.|.++|+.-|++-...
T Consensus       109 G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l  188 (639)
T KOG1130|consen  109 GAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL  188 (639)
T ss_pred             cccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7888887765544332      1233578889999998888765321  11    2355667788888888888776554


Q ss_pred             hHHHHHHHHHHHHhh-------chhhHHHHH-hcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc----hHHHHH
Q psy9159         113 SNTQKWYGICVGANG-------QFQSLKEKI-KCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS----FFERKI  180 (259)
Q Consensus       113 ~~~~~~la~~~~~~~-------~~~~~~~~~-~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~----~~~~~~  180 (259)
                      .+. ...|.+++.+|       +|..++..- .....+.+.-++|-+-     .++.++|.+|.-++.++    +|.+.+
T Consensus       189 gDr-~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeR-----RA~sNlgN~hiflg~fe~A~ehYK~tl  262 (639)
T KOG1130|consen  189 GDR-LAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAER-----RAHSNLGNCHIFLGNFELAIEHYKLTL  262 (639)
T ss_pred             hhH-HhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHH-----HhhcccchhhhhhcccHhHHHHHHHHH
Confidence            332 23455555544       444332211 1112233444444332     45556666554432221    111111


Q ss_pred             HH------------HHhcC----CCCCcHHHHHHHHHHHHhhCCCC-----cHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159         181 AV------------LIVSD----LDEPTAEDAIANCLKAEELAPAP-----WKENQLLIAKCYIEAGEYAKAVQWLDKAK  239 (259)
Q Consensus       181 ~~------------~~~~~----~~~g~~~eAi~~~~kAi~l~P~~-----~~~~~~~la~~~~~~g~~~eA~~~~~kal  239 (259)
                      ..            .+|..    .-...+++||.++.+=+.+...-     -.+++..||.++..+|..++|+...++.+
T Consensus       263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            10            00000    00244555555555555553200     12345555555555566666655555555


Q ss_pred             cCC
Q psy9159         240 AIP  242 (259)
Q Consensus       240 ~l~  242 (259)
                      ++.
T Consensus       343 ~~s  345 (639)
T KOG1130|consen  343 RSS  345 (639)
T ss_pred             HHH
Confidence            554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.85  E-value=3.1e-05  Score=43.81  Aligned_cols=34  Identities=35%  Similarity=0.643  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      +.+|+++|.+|..+|++.              +|+..+++|++++|+|
T Consensus         1 a~~~~~~g~~~~~~~~~~--------------~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYE--------------EALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HH--------------HHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCch--------------HHHHHHHHHHHHCcCC
Confidence            468999999999999875              9999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0545|consensus

Probab=97.83  E-value=0.00013  Score=60.00  Aligned_cols=103  Identities=15%  Similarity=0.103  Sum_probs=78.5

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhh--------cCCCCHHH----------HHHHHHHHHHhhchhcccCcHHHHHH
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNN--------KQPNDPDV----------LYRLAKACHCLYDIKRRENDKEASEK   93 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~--------~~p~~~~~----------~~~la~~~~~~g~~~~~~~~~~~~~~   93 (259)
                      -++++.+|  .. |+|++|.+.|..++.        ..|.+|+.          +.+.+.++...|++.           
T Consensus       182 ~q~GN~lf--k~-~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~y-----------  247 (329)
T KOG0545|consen  182 HQEGNRLF--KL-GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYY-----------  247 (329)
T ss_pred             HHhhhhhh--hh-ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHH-----------
Confidence            46788888  66 999999999988865        46777653          444555555556554           


Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHH
Q psy9159          94 YILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYS  161 (259)
Q Consensus        94 ~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~  161 (259)
                         ++++.+...|..+|+|..+++.-|.+....=+..          +|...+.++|+++|.-..+-.
T Consensus       248 ---evleh~seiL~~~~~nvKA~frRakAhaa~Wn~~----------eA~~D~~~vL~ldpslasvVs  302 (329)
T KOG0545|consen  248 ---EVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEA----------EAKADLQKVLELDPSLASVVS  302 (329)
T ss_pred             ---HHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHH----------HHHHHHHHHHhcChhhHHHHH
Confidence               9999999999999999999988887765443332          567899999999998776543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.83  E-value=4.9e-05  Score=42.80  Aligned_cols=34  Identities=41%  Similarity=0.606  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      +++++.+|.++...|++.              +|++.++++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~--------------~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYE--------------EAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HH--------------HHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHH--------------HHHHHHHHHHHHCcCC
Confidence            578999999999999875              9999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.77  E-value=0.0028  Score=55.37  Aligned_cols=168  Identities=10%  Similarity=0.059  Sum_probs=107.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhh
Q psy9159          52 NLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQS  131 (259)
Q Consensus        52 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~  131 (259)
                      .-+++.+..+|+|++.|..+....-..-....  ..+.......+.-+.++++||+.+|++...+..+=.+.....+.  
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~--~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~--   81 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQS--SSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS--   81 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccc--cchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH--
Confidence            45788899999999999988876655433210  00345667778999999999999998887654433333322222  


Q ss_pred             HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh-hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC---
Q psy9159         132 LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI-SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA---  207 (259)
Q Consensus       132 ~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~---  207 (259)
                              ....+.+++++..+|+++..|..+=.+.... +.+. +.. +         ..-|.+++..+.....-.   
T Consensus        82 --------~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~-v~~-~---------~~~y~~~l~~L~~~~~~~~~~  142 (321)
T PF08424_consen   82 --------EKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFT-VSD-V---------RDVYEKCLRALSRRRSGRMTS  142 (321)
T ss_pred             --------HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCc-HHH-H---------HHHHHHHHHHHHHhhcccccc
Confidence                    2345778999999999999987776543321 1100 000 0         022444444444433321   


Q ss_pred             ----C---CCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         208 ----P---APWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       208 ----P---~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                          |   .....+...+...+...|..+.|+..++-.++++
T Consensus       143 ~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  143 HPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence                0   0113446677788889999999999999999876

>KOG2053|consensus

Probab=97.75  E-value=0.006  Score=58.46  Aligned_cols=191  Identities=9%  Similarity=-0.068  Sum_probs=126.4

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc----------cC-cH---------HHHHHHHHHHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR----------EN-DK---------EASEKYILQGIEY  101 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~----------~~-~~---------~~~~~~~~~A~~~  101 (259)
                      .. +++++|++...+.++..|+.+.+...-|.+..++|+..+.          ++ |.         -+..+..++|...
T Consensus        21 d~-~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   21 DS-SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hh-HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            45 8999999999999999999999999999999999987642          11 11         1456778999999


Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhh-cc-------
Q psy9159         102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEIS-KL-------  173 (259)
Q Consensus       102 ~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~-~~-------  173 (259)
                      |++++..+|. -+-...+-+++.+.+++....      ..+.+.|    +..|+++-+....-.+.++.. ..       
T Consensus       100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQ------kaa~~Ly----K~~pk~~yyfWsV~Slilqs~~~~~~~~~~i  168 (932)
T KOG2053|consen  100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQ------KAALQLY----KNFPKRAYYFWSVISLILQSIFSENELLDPI  168 (932)
T ss_pred             HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHH------HHHHHHH----HhCCcccchHHHHHHHHHHhccCCcccccch
Confidence            9999999999 666677777777777765221      1234444    478888865443333333321 10       


Q ss_pred             --chHHHHHHHHHhcC----------------CCCCcHHHHHHHHHHHH-hhCCCCcHHhH-HHHHHHHHHhCCHHHHHH
Q psy9159         174 --SFFERKIAVLIVSD----------------LDEPTAEDAIANCLKAE-ELAPAPWKENQ-LLIAKCYIEAGEYAKAVQ  233 (259)
Q Consensus       174 --~~~~~~~~~~~~~~----------------~~~g~~~eAi~~~~kAi-~l~P~~~~~~~-~~la~~~~~~g~~~eA~~  233 (259)
                        +-..+.+...+...                -.+|++++|.+.+..-+ +..| ....+. ..-...+..++++.+-.+
T Consensus       169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~-~~~~~l~~~~~dllk~l~~w~~l~~  247 (932)
T KOG2053|consen  169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT-SANLYLENKKLDLLKLLNRWQELFE  247 (932)
T ss_pred             hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHhcChHHHHH
Confidence              01112222111111                11688999999994333 3333 222222 234577888899999999


Q ss_pred             HHHHHhcCCCCC
Q psy9159         234 WLDKAKAIPVVS  245 (259)
Q Consensus       234 ~~~kal~l~p~~  245 (259)
                      ...++++-++++
T Consensus       248 l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  248 LSSRLLEKGNDD  259 (932)
T ss_pred             HHHHHHHhCCcc
Confidence            999999988776

>KOG4555|consensus

Probab=97.75  E-value=0.0015  Score=48.88  Aligned_cols=84  Identities=19%  Similarity=0.219  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh----hHHHHHHHHHHHh
Q psy9159          95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF----TLYSLKGRYQYEI  170 (259)
Q Consensus        95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~----~~~~~lG~~~~~~  170 (259)
                      ++.|++.|.++|.+-|.++.++.+-+..+...++.+          .+.+.+++|+++.-...    .++...|.+|...
T Consensus        59 Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e----------~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   59 LDGALELFGQALCLAPERASAYNNRAQALRLQGDDE----------EALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             hHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChH----------HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            359999999999999999999999999998888877          45688899999865543    4567777766543


Q ss_pred             hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC
Q psy9159         171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP  208 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P  208 (259)
                                          |+-+.|..-|+.|-++..
T Consensus       129 --------------------g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  129 --------------------GNDDAARADFEAAAQLGS  146 (175)
T ss_pred             --------------------CchHHHHHhHHHHHHhCC
Confidence                                778888888888877654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.74  E-value=0.002  Score=63.88  Aligned_cols=157  Identities=13%  Similarity=0.022  Sum_probs=105.3

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCC---------CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPN---------DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      .. |++++|...+..+....+.         ..++...+|.++...|++.              +|...++++++..|..
T Consensus       421 ~~-g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~--------------~A~~~~~~al~~~~~~  485 (903)
T PRK04841        421 SQ-HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPE--------------EAERLAELALAELPLT  485 (903)
T ss_pred             HC-CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHH--------------HHHHHHHHHHhcCCCc
Confidence            45 8999999998887654221         1234444566666666654              8999999999866554


Q ss_pred             hH-----HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC------hhHHHHHHHHHHHhhccchHHHHHH
Q psy9159         113 SN-----TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD------FTLYSLKGRYQYEISKLSFFERKIA  181 (259)
Q Consensus       113 ~~-----~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~------~~~~~~lG~~~~~~~~~~~~~~~~~  181 (259)
                      ..     +...+|.++...|++.          .+...+++++.+....      ..++..+|.++..            
T Consensus       486 ~~~~~~~a~~~lg~~~~~~G~~~----------~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~------------  543 (903)
T PRK04841        486 WYYSRIVATSVLGEVHHCKGELA----------RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA------------  543 (903)
T ss_pred             cHHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH------------
Confidence            32     3345666666667766          3455666666543321      1244556666554            


Q ss_pred             HHHhcCCCCCcHHHHHHHHHHHHhhCCC----C---cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159         182 VLIVSDLDEPTAEDAIANCLKAEELAPA----P---WKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV  243 (259)
Q Consensus       182 ~~~~~~~~~g~~~eAi~~~~kAi~l~P~----~---~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p  243 (259)
                              .|++++|..++.+++++...    .   ....+..+|.++...|++++|...+++++.+..
T Consensus       544 --------~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        544 --------QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence                    38899999999999986320    1   122356789999999999999999999988754

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.0037  Score=52.97  Aligned_cols=156  Identities=12%  Similarity=0.088  Sum_probs=104.9

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA  109 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~  109 (259)
                      +.+.++..++  .. |++.+|...+..++...|++.++...++.+|...|+..              .|    +..+...
T Consensus       136 ~~~~~~~~~~--~~-e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e--------------~A----~~iL~~l  194 (304)
T COG3118         136 EALAEAKELI--EA-EDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVE--------------AA----QAILAAL  194 (304)
T ss_pred             HHHHHhhhhh--hc-cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChH--------------HH----HHHHHhC
Confidence            4566666777  66 99999999999999999999999999999999988764              33    3345555


Q ss_pred             CCChHHHHHHH-----HHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHH
Q psy9159         110 PNNSNTQKWYG-----ICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLI  184 (259)
Q Consensus       110 P~~~~~~~~la-----~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~  184 (259)
                      |.+...-.+.+     .++.+......           ...+++.+.-||+|..+-+.++..+...              
T Consensus       195 P~~~~~~~~~~l~a~i~ll~qaa~~~~-----------~~~l~~~~aadPdd~~aa~~lA~~~~~~--------------  249 (304)
T COG3118         195 PLQAQDKAAHGLQAQIELLEQAAATPE-----------IQDLQRRLAADPDDVEAALALADQLHLV--------------  249 (304)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCCC-----------HHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------
Confidence            65544433333     01111111110           2456777889999999999999877664              


Q ss_pred             hcCCCCCcHHHHHHHHHHHHhhCCCC-cHHhHHHHHHHHHHhCCHHHHHHHHHH
Q psy9159         185 VSDLDEPTAEDAIANCLKAEELAPAP-WKENQLLIAKCYIEAGEYAKAVQWLDK  237 (259)
Q Consensus       185 ~~~~~~g~~~eAi~~~~kAi~l~P~~-~~~~~~~la~~~~~~g~~~eA~~~~~k  237 (259)
                            |+.++|.+++-..+..|-+. +..+.-.+=.++...|..+.+...+++
T Consensus       250 ------g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR  297 (304)
T COG3118         250 ------GRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR  297 (304)
T ss_pred             ------CCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence                  78899998888888876411 234555666666666655545444443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.70  E-value=4.6e-05  Score=43.00  Aligned_cols=32  Identities=25%  Similarity=0.452  Sum_probs=29.9

Q ss_pred             HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         213 ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       213 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      .+|+.+|.+|..+|++++|++.|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            57899999999999999999999999999984

...

>KOG2796|consensus

Probab=97.69  E-value=0.0059  Score=51.05  Aligned_cols=125  Identities=13%  Similarity=0.125  Sum_probs=91.7

Q ss_pred             CCcCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHH----HhCC--CChH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQ-PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM----ELAP--NNSN  114 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal----~~~P--~~~~  114 (259)
                      +. |.|.-..+++.+.++.+ |.+|.....||++.++.|+..              .|..++++.=    .++.  ++-.
T Consensus       189 G~-kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k--------------~a~~yf~~vek~~~kL~~~q~~~~  253 (366)
T KOG2796|consen  189 GM-KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIK--------------TAEKYFQDVEKVTQKLDGLQGKIM  253 (366)
T ss_pred             cc-hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHH--------------HHHHHHHHHHHHHhhhhccchhHH
Confidence            66 89999999999999998 788999999999999999864              5555555322    2221  1222


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHH
Q psy9159         115 TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAE  194 (259)
Q Consensus       115 ~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  194 (259)
                      ++.+.+.++....++.          .+-..+.+.+..||.++.+..+.+.|..-.                    |+..
T Consensus       254 V~~n~a~i~lg~nn~a----------~a~r~~~~i~~~D~~~~~a~NnKALcllYl--------------------g~l~  303 (366)
T KOG2796|consen  254 VLMNSAFLHLGQNNFA----------EAHRFFTEILRMDPRNAVANNNKALCLLYL--------------------GKLK  303 (366)
T ss_pred             HHhhhhhheecccchH----------HHHHHHhhccccCCCchhhhchHHHHHHHH--------------------HHHH
Confidence            2333333333333333          345677899999999999999999887654                    7789


Q ss_pred             HHHHHHHHHHhhCCCCc
Q psy9159         195 DAIANCLKAEELAPAPW  211 (259)
Q Consensus       195 eAi~~~~kAi~l~P~~~  211 (259)
                      +|++..+.+++..|...
T Consensus       304 DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  304 DALKQLEAMVQQDPRHY  320 (366)
T ss_pred             HHHHHHHHHhccCCccc
Confidence            99999999999999543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.64  E-value=0.0073  Score=53.40  Aligned_cols=184  Identities=14%  Similarity=0.026  Sum_probs=113.5

Q ss_pred             CcCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHH---hhchhcccCcHHHHHHHHHHHHHHHHH-HHHhCCCChH
Q psy9159          43 KKDDKAKAYNLTMELNNK----QPNDPDVLYRLAKACHC---LYDIKRRENDKEASEKYILQGIEYAKK-AMELAPNNSN  114 (259)
Q Consensus        43 ~~~~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~---~g~~~~~~~~~~~~~~~~~~A~~~~~k-al~~~P~~~~  114 (259)
                      +..+|+.-+.+.+..-..    -++.+.+-+..|.++.+   .|+.              ++|+..+.. ....++.+++
T Consensus       153 diqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdr--------------e~Al~il~~~l~~~~~~~~d  218 (374)
T PF13281_consen  153 DIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDR--------------EKALQILLPVLESDENPDPD  218 (374)
T ss_pred             hhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCH--------------HHHHHHHHHHHhccCCCChH
Confidence            348888888888888776    67788888888988888   4443              599999998 5566688899


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccch---HHHHHHHHHhcCCCCC
Q psy9159         115 TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF---FERKIAVLIVSDLDEP  191 (259)
Q Consensus       115 ~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~---~~~~~~~~~~~~~~~g  191 (259)
                      .+-..|.++-..-.-.+. .......+|+..|.++.+++|+....-+ ++.++.-.|+...   -.+.+...+       
T Consensus       219 ~~gL~GRIyKD~~~~s~~-~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN-~AtLL~~~g~~~~~~~el~~i~~~l-------  289 (374)
T PF13281_consen  219 TLGLLGRIYKDLFLESNF-TDRESLDKAIEWYRKGFEIEPDYYSGIN-AATLLMLAGHDFETSEELRKIGVKL-------  289 (374)
T ss_pred             HHHHHHHHHHHHHHHcCc-cchHHHHHHHHHHHHHHcCCccccchHH-HHHHHHHcCCcccchHHHHHHHHHH-------
Confidence            888888888655211000 0112245788999999999987554333 2323333222100   001111000       


Q ss_pred             cHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhhh
Q psy9159         192 TAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLSTT  254 (259)
Q Consensus       192 ~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~~  254 (259)
                          +.-.-++- .+++....-.+-.++.+.+..|++++|++++++++.+.|..=+-+-+..|
T Consensus       290 ----~~llg~kg-~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~n  347 (374)
T PF13281_consen  290 ----SSLLGRKG-SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLEN  347 (374)
T ss_pred             ----HHHHHhhc-cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHH
Confidence                00000111 12232223345667888999999999999999999998776554444443

>KOG3081|consensus

Probab=97.60  E-value=0.012  Score=49.25  Aligned_cols=55  Identities=22%  Similarity=0.165  Sum_probs=29.5

Q ss_pred             CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      +++.+|.-.|+..-+-.| ..+.....+|.|.+.+|++++|...++.++..++.+|
T Consensus       187 ek~qdAfyifeE~s~k~~-~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp  241 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTP-PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP  241 (299)
T ss_pred             hhhhhHHHHHHHHhcccC-CChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence            445555555555555322 2344455555555555666666666666555555443

>KOG2376|consensus

Probab=97.49  E-value=0.0017  Score=59.59  Aligned_cols=116  Identities=12%  Similarity=0.148  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh---hHHHHHHHHHHH
Q psy9159          93 KYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF---TLYSLKGRYQYE  169 (259)
Q Consensus        93 ~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~---~~~~~lG~~~~~  169 (259)
                      +.+++|+..+.+.+.+.|++..+..---.++...+.|.             +++ +.|+.++.+.   ...+..+.|.++
T Consensus        26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~-------------~AL-k~ikk~~~~~~~~~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYE-------------DAL-KLIKKNGALLVINSFFFEKAYCEYR   91 (652)
T ss_pred             hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHH-------------HHH-HHHHhcchhhhcchhhHHHHHHHHH
Confidence            45789999999999999999999877777777776665             333 5566666422   112556666666


Q ss_pred             hhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         170 ISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      +                    ++.++|+.+++   .+++ ......--.|.++.++|+|++|...|+..++-+-++.
T Consensus        92 l--------------------nk~Dealk~~~---~~~~-~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~  144 (652)
T KOG2376|consen   92 L--------------------NKLDEALKTLK---GLDR-LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ  144 (652)
T ss_pred             c--------------------ccHHHHHHHHh---cccc-cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence            4                    78899999999   4555 3334455578999999999999999999977665444

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.48  E-value=0.00021  Score=40.24  Aligned_cols=31  Identities=29%  Similarity=0.309  Sum_probs=28.4

Q ss_pred             hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC
Q psy9159         158 TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP  208 (259)
Q Consensus       158 ~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P  208 (259)
                      .+|+.+|.++..+                    |++++|+++|+++++++|
T Consensus         2 ~~~~~lg~~y~~~--------------------~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQL--------------------GDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHT--------------------TSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHhhCC
Confidence            5789999999875                    889999999999999999

...

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.46  E-value=0.0044  Score=53.08  Aligned_cols=121  Identities=13%  Similarity=0.048  Sum_probs=91.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      +..+.|...|.++.+..+-..++|...|.+-+..++..             +.|...|+++++.-|.+...|..+...+.
T Consensus        15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~-------------~~A~~Ife~glk~f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen   15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDP-------------KRARKIFERGLKKFPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-H-------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCH-------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            56889999999999877788999999998877755543             36999999999999999999988888887


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh---hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF---TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL  201 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~---~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~  201 (259)
                      ..++..          .+...+++++..-|...   ..|-..-.+-...                    |+.+...+..+
T Consensus        82 ~~~d~~----------~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~--------------------Gdl~~v~~v~~  131 (280)
T PF05843_consen   82 KLNDIN----------NARALFERAISSLPKEKQSKKIWKKFIEFESKY--------------------GDLESVRKVEK  131 (280)
T ss_dssp             HTT-HH----------HHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHH--------------------S-HHHHHHHHH
T ss_pred             HhCcHH----------HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHc--------------------CCHHHHHHHHH
Confidence            777655          46789999999877766   3444444333332                    77788888888


Q ss_pred             HHHhhCC
Q psy9159         202 KAEELAP  208 (259)
Q Consensus       202 kAi~l~P  208 (259)
                      ++.+.-|
T Consensus       132 R~~~~~~  138 (280)
T PF05843_consen  132 RAEELFP  138 (280)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            8888877

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.40  E-value=0.0074  Score=47.99  Aligned_cols=112  Identities=14%  Similarity=0.139  Sum_probs=89.8

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNN-KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP  110 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P  110 (259)
                      +.-+..+.  .. |++.||...|.+++. ...+++..+..++++.+..++..              .|...+++..+-+|
T Consensus        93 ~rLa~al~--el-Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A--------------~a~~tLe~l~e~~p  155 (251)
T COG4700          93 YRLANALA--EL-GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA--------------AAQQTLEDLMEYNP  155 (251)
T ss_pred             HHHHHHHH--Hh-hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH--------------HHHHHHHHHhhcCC
Confidence            34444555  44 999999999999976 67899999999999999988876              88999999999988


Q ss_pred             C--ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhh
Q psy9159         111 N--NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEIS  171 (259)
Q Consensus       111 ~--~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~  171 (259)
                      .  .|+.+..+|.++...|.+.          ++...++-++..-|.- .+-...|.|+.++|
T Consensus       156 a~r~pd~~Ll~aR~laa~g~~a----------~Aesafe~a~~~ypg~-~ar~~Y~e~La~qg  207 (251)
T COG4700         156 AFRSPDGHLLFARTLAAQGKYA----------DAESAFEVAISYYPGP-QARIYYAEMLAKQG  207 (251)
T ss_pred             ccCCCCchHHHHHHHHhcCCch----------hHHHHHHHHHHhCCCH-HHHHHHHHHHHHhc
Confidence            6  5777889999999998876          4567888899888864 55566677776653

>KOG1308|consensus

Probab=97.38  E-value=5.9e-05  Score=64.70  Aligned_cols=85  Identities=18%  Similarity=0.160  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHH
Q psy9159         141 VFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAK  220 (259)
Q Consensus       141 ~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~  220 (259)
                      .+++.+.+||.++|..+..|...+.++.++                    ++...||.-+..|++++| +...-|-..|.
T Consensus       132 ~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl--------------------~kp~~airD~d~A~ein~-Dsa~~ykfrg~  190 (377)
T KOG1308|consen  132 TAIELFTSAIELNPPLAILYAKRASVFLKL--------------------KKPNAAIRDCDFAIEINP-DSAKGYKFRGY  190 (377)
T ss_pred             hhhcccccccccCCchhhhcccccceeeec--------------------cCCchhhhhhhhhhccCc-ccccccchhhH
Confidence            567899999999999999999999998875                    678999999999999999 77788888999


Q ss_pred             HHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         221 CYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       221 ~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      +...+|++++|.+.++.+.+++-+..
T Consensus       191 A~rllg~~e~aa~dl~~a~kld~dE~  216 (377)
T KOG1308|consen  191 AERLLGNWEEAAHDLALACKLDYDEA  216 (377)
T ss_pred             HHHHhhchHHHHHHHHHHHhccccHH
Confidence            99999999999999999999885543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.37  E-value=0.035  Score=48.98  Aligned_cols=150  Identities=19%  Similarity=0.201  Sum_probs=120.6

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      .+...|.+.-.++.+..|+-+..-...+++++.-|+..              +|-.+++.+.+.+| +|+++..  .+..
T Consensus       243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~r--------------Kg~~ilE~aWK~eP-HP~ia~l--Y~~a  305 (531)
T COG3898         243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLR--------------KGSKILETAWKAEP-HPDIALL--YVRA  305 (531)
T ss_pred             CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchh--------------hhhhHHHHHHhcCC-ChHHHHH--HHHh
Confidence            67889999999999999999999999999999988865              89999999999999 5665433  3444


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE  204 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi  204 (259)
                      +.|+..  +++       .+..++.-++.|||.+......+.-+..                    |.+..|...-+.+.
T Consensus       306 r~gdta--~dR-------lkRa~~L~slk~nnaes~~~va~aAlda--------------------~e~~~ARa~Aeaa~  356 (531)
T COG3898         306 RSGDTA--LDR-------LKRAKKLESLKPNNAESSLAVAEAALDA--------------------GEFSAARAKAEAAA  356 (531)
T ss_pred             cCCCcH--HHH-------HHHHHHHHhcCccchHHHHHHHHHHHhc--------------------cchHHHHHHHHHHh
Confidence            445432  222       2334666789999999998888766553                    78999999999999


Q ss_pred             hhCCCCcHHhHHHHHHHHHHh-CCHHHHHHHHHHHhcCC
Q psy9159         205 ELAPAPWKENQLLIAKCYIEA-GEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       205 ~l~P~~~~~~~~~la~~~~~~-g~~~eA~~~~~kal~l~  242 (259)
                      ...|.  ..+++-|+.+-... |+-.++..|+-+++.-+
T Consensus       357 r~~pr--es~~lLlAdIeeAetGDqg~vR~wlAqav~AP  393 (531)
T COG3898         357 REAPR--ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP  393 (531)
T ss_pred             hhCch--hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence            99993  56788899888776 99999999999999854

>KOG0530|consensus

Probab=97.34  E-value=0.015  Score=48.57  Aligned_cols=160  Identities=13%  Similarity=0.033  Sum_probs=110.6

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      .+-.+|+++.+.+|..+|.+-.+|.-.=.+...++..             +.+-++++.+.++-+|.|..+|.+--.+..
T Consensus        57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~d-------------L~~El~~l~eI~e~npKNYQvWHHRr~ive  123 (318)
T KOG0530|consen   57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSD-------------LNKELEYLDEIIEDNPKNYQVWHHRRVIVE  123 (318)
T ss_pred             ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHhCccchhHHHHHHHHHH
Confidence            5667777777777777887777775554444444432             357788888888888998888888877777


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE  204 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi  204 (259)
                      ..|+..+         .-.+..++.|..|..|..+|...--++...                    +.+++-+.+....+
T Consensus       124 ~l~d~s~---------rELef~~~~l~~DaKNYHaWshRqW~~r~F--------------------~~~~~EL~y~~~Ll  174 (318)
T KOG0530|consen  124 LLGDPSF---------RELEFTKLMLDDDAKNYHAWSHRQWVLRFF--------------------KDYEDELAYADELL  174 (318)
T ss_pred             HhcCccc---------chHHHHHHHHhccccchhhhHHHHHHHHHH--------------------hhHHHHHHHHHHHH
Confidence            7776542         124677888888888888887776554432                    55888888888888


Q ss_pred             hhCCCCcHHhHHHHHHHHHHhC------CHHHHHHHHHHHhcCCCCCcc
Q psy9159         205 ELAPAPWKENQLLIAKCYIEAG------EYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       205 ~l~P~~~~~~~~~la~~~~~~g------~~~eA~~~~~kal~l~p~~~~  247 (259)
                      +.|- .+-.+|.++-.+.....      ..+.-+.+..+.+.+.|.|-.
T Consensus       175 e~Di-~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeS  222 (318)
T KOG0530|consen  175 EEDI-RNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNES  222 (318)
T ss_pred             HHhh-hccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCcc
Confidence            8876 44455655443333321      244567788888888888764

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.32  E-value=0.0044  Score=56.04  Aligned_cols=49  Identities=16%  Similarity=0.046  Sum_probs=43.6

Q ss_pred             CCcHHHHHHHHHHHHhhCCC-CcHHhHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159         190 EPTAEDAIANCLKAEELAPA-PWKENQLLIAKCYIEAGEYAKAVQWLDKA  238 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~-~~~~~~~~la~~~~~~g~~~eA~~~~~ka  238 (259)
                      .|+.+|||+.|+..++..|. ++..++.+|-.++..++++.++...+.|-
T Consensus       272 lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  272 LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            49999999999999998875 35678999999999999999999998885

The molecular function of this protein is uncertain.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.31  E-value=0.0058  Score=44.29  Aligned_cols=87  Identities=15%  Similarity=0.224  Sum_probs=68.5

Q ss_pred             HHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159          34 EIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP---DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP  110 (259)
Q Consensus        34 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P  110 (259)
                      .+..++  .. |++-+|+++.+..+...+++.   -++..-|.++..++...   .+++.+...+..+++.+.++..+.|
T Consensus         2 ~A~~~~--~r-GnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~t---en~d~k~~yLl~sve~~s~a~~Lsp   75 (111)
T PF04781_consen    2 KAKDYF--AR-GNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKT---ENPDVKFRYLLGSVECFSRAVELSP   75 (111)
T ss_pred             hHHHHH--Hc-cCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhc---cCchHHHHHHHHhHHHHHHHhccCh
Confidence            345566  56 999999999999999988887   55666688887776544   4677888899999999999999999


Q ss_pred             CChHHHHHHHHHHHHh
Q psy9159         111 NNSNTQKWYGICVGAN  126 (259)
Q Consensus       111 ~~~~~~~~la~~~~~~  126 (259)
                      +.+..++.+|.-++..
T Consensus        76 ~~A~~L~~la~~l~s~   91 (111)
T PF04781_consen   76 DSAHSLFELASQLGSV   91 (111)
T ss_pred             hHHHHHHHHHHHhhhH
Confidence            9877666666554433

>KOG1308|consensus

Probab=97.28  E-value=0.00014  Score=62.53  Aligned_cols=96  Identities=15%  Similarity=0.136  Sum_probs=81.2

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      -++...+  .+ |.+++|++.+..+|..+|....++-..+.++..++...              .|+.-|..|++++|+.
T Consensus       119 ~~A~eAl--n~-G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~--------------~airD~d~A~ein~Ds  181 (377)
T KOG1308|consen  119 VQASEAL--ND-GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPN--------------AAIRDCDFAIEINPDS  181 (377)
T ss_pred             HHHHHHh--cC-cchhhhhcccccccccCCchhhhcccccceeeeccCCc--------------hhhhhhhhhhccCccc
Confidence            3444566  66 99999999999999999999999999999999988765              8999999999999999


Q ss_pred             hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC
Q psy9159         113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK  155 (259)
Q Consensus       113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~  155 (259)
                      ...+.+-+.+...+|++..          +...+..+.+++-+
T Consensus       182 a~~ykfrg~A~rllg~~e~----------aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  182 AKGYKFRGYAERLLGNWEE----------AAHDLALACKLDYD  214 (377)
T ss_pred             ccccchhhHHHHHhhchHH----------HHHHHHHHHhcccc
Confidence            9999999999998998873          44566666666544

>KOG0530|consensus

Probab=97.28  E-value=0.039  Score=46.15  Aligned_cols=142  Identities=9%  Similarity=0.033  Sum_probs=109.0

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      .+..+-++.+.++++.+|+|-.+|.-.-.+....|+..             -.-++..++++..|..|..+|.+-.+++.
T Consensus        92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s-------------~rELef~~~~l~~DaKNYHaWshRqW~~r  158 (318)
T KOG0530|consen   92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPS-------------FRELEFTKLMLDDDAKNYHAWSHRQWVLR  158 (318)
T ss_pred             HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcc-------------cchHHHHHHHHhccccchhhhHHHHHHHH
Confidence            56778889999999999999999998888888888653             15689999999999999999999999998


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE  204 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi  204 (259)
                      ..+.++.          -..+..+.|+.|--|-++|...=-+.....              +....-..+.-+.+..+.|
T Consensus       159 ~F~~~~~----------EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~--------------~~~~~~~le~El~yt~~~I  214 (318)
T KOG0530|consen  159 FFKDYED----------ELAYADELLEEDIRNNSAWNQRYFVITNTK--------------GVISKAELERELNYTKDKI  214 (318)
T ss_pred             HHhhHHH----------HHHHHHHHHHHhhhccchhheeeEEEEecc--------------CCccHHHHHHHHHHHHHHH
Confidence            8887762          345667888888888888866422111100              0000122567788999999


Q ss_pred             hhCCCCcHHhHHHHHHHHHH
Q psy9159         205 ELAPAPWKENQLLIAKCYIE  224 (259)
Q Consensus       205 ~l~P~~~~~~~~~la~~~~~  224 (259)
                      .+.| ++..+|.+|.-++..
T Consensus       215 ~~vP-~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  215 LLVP-NNESAWNYLKGLLEL  233 (318)
T ss_pred             HhCC-CCccHHHHHHHHHHh
Confidence            9999 788899999888876

>KOG1070|consensus

Probab=97.26  E-value=0.012  Score=58.91  Aligned_cols=154  Identities=12%  Similarity=-0.011  Sum_probs=97.6

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHhh
Q psy9159          49 KAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM-ELAPNNSNTQKWYGICVGANG  127 (259)
Q Consensus        49 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal-~~~P~~~~~~~~la~~~~~~~  127 (259)
                      +-.+-+++.+..+|++.-.|.+.-.-..+++..              ++|++.+++|| ++++...+=..++=.++..+.
T Consensus      1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEi--------------ekAR~iaerAL~tIN~REeeEKLNiWiA~lNlE 1507 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEI--------------EKARKIAERALKTINFREEEEKLNIWIAYLNLE 1507 (1710)
T ss_pred             cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhh--------------HHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHH
Confidence            345567888888999988887655555555544              59999999999 566654433322222333332


Q ss_pred             chhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC
Q psy9159         128 QFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA  207 (259)
Q Consensus       128 ~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~  207 (259)
                      +..+..      ....+.+++|-+.... ..+|..|..+|-..                    +++++|.+.++.-++-.
T Consensus      1508 n~yG~e------esl~kVFeRAcqycd~-~~V~~~L~~iy~k~--------------------ek~~~A~ell~~m~KKF 1560 (1710)
T KOG1070|consen 1508 NAYGTE------ESLKKVFERACQYCDA-YTVHLKLLGIYEKS--------------------EKNDEADELLRLMLKKF 1560 (1710)
T ss_pred             HhhCcH------HHHHHHHHHHHHhcch-HHHHHHHHHHHHHh--------------------hcchhHHHHHHHHHHHh
Confidence            222211      1234566666554322 24455555556543                    66788888888888776


Q ss_pred             CCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         208 PAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       208 P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      . +...+|..+|..++.+.+-++|.+.+.+|++.-|.
T Consensus      1561 ~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1561 G-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             c-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            6 55677888888888888888888888888877766

>KOG2053|consensus

Probab=97.24  E-value=0.011  Score=56.64  Aligned_cols=121  Identities=10%  Similarity=0.025  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhh
Q psy9159          92 EKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEIS  171 (259)
Q Consensus        92 ~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~  171 (259)
                      .+++.+|+..+.+.++..|+-.-+...-|.++.++|...          ++..+++..-.+.|++-..+-.+-.+|.++ 
T Consensus        22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~----------ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~-   90 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGD----------EALKLLEALYGLKGTDDLTLQFLQNVYRDL-   90 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCch----------hHHHHHhhhccCCCCchHHHHHHHHHHHHH-
Confidence            456789999999999999999988888899999988876          345666666667888888999999988775 


Q ss_pred             ccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         172 KLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                                         |++++|..+|+++++.+| . -.....+-.+|.+.+.|.+-.+.--+.-..-|.
T Consensus        91 -------------------~~~d~~~~~Ye~~~~~~P-~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk  142 (932)
T KOG2053|consen   91 -------------------GKLDEAVHLYERANQKYP-S-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPK  142 (932)
T ss_pred             -------------------hhhhHHHHHHHHHHhhCC-c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence                               779999999999999999 5 777888888888888776544333333334443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.23  E-value=0.045  Score=46.80  Aligned_cols=166  Identities=16%  Similarity=0.072  Sum_probs=115.5

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN-SNTQKWYGICV  123 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~-~~~~~~la~~~  123 (259)
                      .+..+|++.|..+.  ...++.+.+.||.+|.......          .+..+|..++++|....-.. ..+...++.++
T Consensus        91 ~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~----------~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~  158 (292)
T COG0790          91 RDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVP----------LDLVKALKYYEKAAKLGNVEAALAMYRLGLAY  158 (292)
T ss_pred             ccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcc----------cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence            56889999999554  4577889999999988643221          13469999999998886433 23367777776


Q ss_pred             HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159         124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA  203 (259)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA  203 (259)
                      ..-..-.+..   .....+...|.+|-...  ++.+.+.+|.+|.. +               .--..++++|+.+|++|
T Consensus       159 ~~g~~~~~~~---~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~-G---------------~Gv~~d~~~A~~wy~~A  217 (292)
T COG0790         159 LSGLQALAVA---YDDKKALYLYRKAAELG--NPDAQLLLGRMYEK-G---------------LGVPRDLKKAFRWYKKA  217 (292)
T ss_pred             HcChhhhccc---HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc-C---------------CCCCcCHHHHHHHHHHH
Confidence            6432000000   11124567777776665  88899999977654 1               11136899999999999


Q ss_pred             HhhCCCCcHHhHHHHHHHHHHhC---------------CHHHHHHHHHHHhcCCCCCcc
Q psy9159         204 EELAPAPWKENQLLIAKCYIEAG---------------EYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       204 i~l~P~~~~~~~~~la~~~~~~g---------------~~~eA~~~~~kal~l~p~~~~  247 (259)
                      .+...   ....+.++ ++...|               +...|..++.++....+....
T Consensus       218 a~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  272 (292)
T COG0790         218 AEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNAC  272 (292)
T ss_pred             HHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHH
Confidence            99864   67788888 777666               888999999999887766544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.23  E-value=0.00018  Score=41.35  Aligned_cols=29  Identities=24%  Similarity=0.524  Sum_probs=24.7

Q ss_pred             hHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         214 NQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       214 ~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                      ++.+||.+|..+|++++|+++|++++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            47889999999999999999999977554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.23  E-value=0.00045  Score=38.39  Aligned_cols=33  Identities=21%  Similarity=0.489  Sum_probs=30.2

Q ss_pred             HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159         213 ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       213 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~  245 (259)
                      ++++.+|.++..+|++++|++.|+++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            367899999999999999999999999998874

>KOG0545|consensus

Probab=97.22  E-value=0.0089  Score=49.49  Aligned_cols=53  Identities=15%  Similarity=0.034  Sum_probs=28.7

Q ss_pred             CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      |.|-+++++....+...| .+..+++..|.+....=+.++|...+.++++++|.
T Consensus       244 ~e~yevleh~seiL~~~~-~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  244 EEYYEVLEHCSEILRHHP-GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS  296 (329)
T ss_pred             HHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence            445555555555555555 44555555555555555555555555555555543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.18  E-value=0.0071  Score=55.63  Aligned_cols=125  Identities=14%  Similarity=0.100  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh--chhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhcc
Q psy9159          96 LQGIEYAKKAMELAPNNSNTQKWYGICVGANG--QFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKL  173 (259)
Q Consensus        96 ~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~--~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~  173 (259)
                      +.|+..+.++.+ .++--.....+..+.....  .+-+....-.....+.+.+++.++.-|+.+-.++..|+++...   
T Consensus       205 ~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~---  280 (468)
T PF10300_consen  205 ELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK---  280 (468)
T ss_pred             HHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---
Confidence            588888888877 4433333223322221111  0111000011233567889999999999999999999988664   


Q ss_pred             chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcH----HhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWK----ENQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~----~~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                                       |+.++|++.|++++.... .+.    -.++.+|.+++.+.++++|.+++.+..+.+
T Consensus       281 -----------------g~~~~Ai~~~~~a~~~q~-~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s  335 (468)
T PF10300_consen  281 -----------------GNLEEAIESFERAIESQS-EWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES  335 (468)
T ss_pred             -----------------cCHHHHHHHHHHhccchh-hHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence                             889999999999996443 333    348899999999999999999999998865

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.17  E-value=0.035  Score=49.28  Aligned_cols=156  Identities=15%  Similarity=0.077  Sum_probs=94.3

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh-------CCC------------ChHH-
Q psy9159          56 ELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL-------APN------------NSNT-  115 (259)
Q Consensus        56 ~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~-------~P~------------~~~~-  115 (259)
                      ..++.+|-.++.+..++.++...|+..       ...+.++.|+-.+++++--       ++.            |-.. 
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~-------~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ff  103 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHA-------QANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFF  103 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHH
Confidence            445678999999999999999999765       6667778888777766522       222            2222 


Q ss_pred             --HHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC-ChhH-HHHHHHHHHHhhccchHHHHHHHHHhcCCCCC
Q psy9159         116 --QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK-DFTL-YSLKGRYQYEISKLSFFERKIAVLIVSDLDEP  191 (259)
Q Consensus       116 --~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~-~~~~-~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g  191 (259)
                        .+.+...+++.|.+.          .|.+..+=.+.+||. ||.. ...+-....+.+..+|+.......        
T Consensus       104 lal~r~i~~L~~RG~~r----------TAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~--------  165 (360)
T PF04910_consen  104 LALFRYIQSLGRRGCWR----------TALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP--------  165 (360)
T ss_pred             HHHHHHHHHHHhcCcHH----------HHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH--------
Confidence              122233333444433          566777788999999 6643 333333333333333333221100        


Q ss_pred             cHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCH---------------HHHHHHHHHHhcCCCC
Q psy9159         192 TAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEY---------------AKAVQWLDKAKAIPVV  244 (259)
Q Consensus       192 ~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~---------------~eA~~~~~kal~l~p~  244 (259)
                        ...  ++...+..-| +   ..+.++.++..+++.               ++|.+.+.+|+..-|.
T Consensus       166 --~~~--~~~~~~~~lP-n---~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  166 --LAK--CYRNWLSLLP-N---FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             --hhh--hhhhhhhhCc-c---HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence              000  1111223345 2   357788888899888               8999999999987764

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.16  E-value=0.048  Score=48.17  Aligned_cols=99  Identities=16%  Similarity=0.062  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHH-----------------------------
Q psy9159          90 ASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGV-----------------------------  140 (259)
Q Consensus        90 ~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~-----------------------------  140 (259)
                      ++++..+.|+.+.+++-++.|.-++++...-......|++.++.+.+....                             
T Consensus       165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad  244 (531)
T COG3898         165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD  244 (531)
T ss_pred             HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence            456667899999999999999999887665555667788877654332211                             


Q ss_pred             --HHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC
Q psy9159         141 --VFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP  208 (259)
Q Consensus       141 --~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P  208 (259)
                        .+...-..+++|.|+...+-..-++.+++-                    |+..++-..++.+.+.+|
T Consensus       245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d--------------------~~~rKg~~ilE~aWK~eP  294 (531)
T COG3898         245 PASARDDALEANKLAPDLVPAAVVAARALFRD--------------------GNLRKGSKILETAWKAEP  294 (531)
T ss_pred             hHHHHHHHHHHhhcCCccchHHHHHHHHHHhc--------------------cchhhhhhHHHHHHhcCC
Confidence              234566788899999999888888888875                    445555555555666555

>KOG1070|consensus

Probab=97.14  E-value=0.053  Score=54.70  Aligned_cols=164  Identities=10%  Similarity=0.051  Sum_probs=100.2

Q ss_pred             CCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHH--------------------------HHHHH
Q psy9159          45 DDKAKAYNLTMELNN-KQPNDPDVLYRLAKACHCLYDIKRRENDKEASE--------------------------KYILQ   97 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~--------------------------~~~~~   97 (259)
                      ++.++|.+..++++. +++...+=..++=.+|..+.+..   +..+.-.                          +.+++
T Consensus      1472 sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~ 1548 (1710)
T KOG1070|consen 1472 SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDE 1548 (1710)
T ss_pred             hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchh
Confidence            788888888888876 45555555555556666665544   1122222                          22344


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC--ChhHHHHHHHHHHHhhccch
Q psy9159          98 GIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK--DFTLYSLKGRYQYEISKLSF  175 (259)
Q Consensus        98 A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~--~~~~~~~lG~~~~~~~~~~~  175 (259)
                      |.++++..++.-.+-...|..++..+.+..+..          .+...+.+||+.-|.  |....-.-+.+-|+      
T Consensus      1549 A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~----------aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk------ 1612 (1710)
T KOG1070|consen 1549 ADELLRLMLKKFGQTRKVWIMYADFLLRQNEAE----------AARELLKRALKSLPKQEHVEFISKFAQLEFK------ 1612 (1710)
T ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHHhcccHHH----------HHHHHHHHHHhhcchhhhHHHHHHHHHHHhh------
Confidence            444444444444444444444444443332211          234555555555555  33333333333333      


Q ss_pred             HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         176 FERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                                    .|+-+.+...|+-.+.-.| .-.+.|.-+...-++.|+.+-+...|++++.+.
T Consensus      1613 --------------~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1613 --------------YGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             --------------cCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence                          2778888889999999999 678889888888889999999999999998865

>KOG1550|consensus

Probab=97.13  E-value=0.029  Score=52.77  Aligned_cols=156  Identities=16%  Similarity=0.019  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH-------hCCCChHHHHHH
Q psy9159          47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME-------LAPNNSNTQKWY  119 (259)
Q Consensus        47 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~-------~~P~~~~~~~~l  119 (259)
                      ..+|++.++.+-+.  .+..+.+.+|.+|...+.-.         .++.+.|+.+++.+..       ..  ++.+.+.+
T Consensus       228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~---------~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~l  294 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGV---------TQDLESAIEYLKLAAESFKKAATKG--LPPAQYGL  294 (552)
T ss_pred             hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccc---------cccHHHHHHHHHHHHHHHHHHHhhc--CCccccHH
Confidence            57788888888764  67888899999998753322         1234566666666554       54  56677788


Q ss_pred             HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHH
Q psy9159         120 GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIAN  199 (259)
Q Consensus       120 a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~  199 (259)
                      |.++..-......     +...+...+.+|-++  .++.+.+.+|.++..-                . +..++..|.++
T Consensus       295 g~~Y~~g~~~~~~-----d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g----------------~-~~~d~~~A~~y  350 (552)
T KOG1550|consen  295 GRLYLQGLGVEKI-----DYEKALKLYTKAAEL--GNPDAQYLLGVLYETG----------------T-KERDYRRAFEY  350 (552)
T ss_pred             HHHHhcCCCCccc-----cHHHHHHHHHHHHhc--CCchHHHHHHHHHHcC----------------C-ccccHHHHHHH
Confidence            8888765432211     233567888888666  4677888999877542                1 12457899999


Q ss_pred             HHHHHhhCCCCcHHhHHHHHHHHHHh----CCHHHHHHHHHHHhcCC
Q psy9159         200 CLKAEELAPAPWKENQLLIAKCYIEA----GEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       200 ~~kAi~l~P~~~~~~~~~la~~~~~~----g~~~eA~~~~~kal~l~  242 (259)
                      |..|....   .+.+.+.+|.||..-    .+...|..+++++.+.+
T Consensus       351 y~~Aa~~G---~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  351 YSLAAKAG---HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHHHHcC---ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            99998753   478889999998765    47889999999999887

>KOG0551|consensus

Probab=97.13  E-value=0.0038  Score=53.64  Aligned_cols=118  Identities=18%  Similarity=0.122  Sum_probs=82.3

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHH----HHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHH
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDV----LYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM  106 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~----~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal  106 (259)
                      .-++++.+|  .. .+|+.|+..|.+.|+..-.|+++    |.+.|-+...+||+              ..++.-+.+++
T Consensus        84 ~KeeGN~~f--K~-Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~Ny--------------Rs~l~Dcs~al  146 (390)
T KOG0551|consen   84 YKEEGNEYF--KE-KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNY--------------RSALNDCSAAL  146 (390)
T ss_pred             HHHHhHHHH--Hh-hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHH--------------HHHHHHHHHHH
Confidence            357788888  55 89999999999999987666654    34455555555554              59999999999


Q ss_pred             HhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc----cCCCChhHHHHHHH
Q psy9159         107 ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ----MAPKDFTLYSLKGR  165 (259)
Q Consensus       107 ~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~----l~P~~~~~~~~lG~  165 (259)
                      .++|++..+++.-+.|+..+..+..+.+-.+........-+.+++    +.|++...+...-.
T Consensus       147 ~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~~l~~k~~~~~L~~er~  209 (390)
T KOG0551|consen  147 KLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELRNLIHKNDKLKLIEERD  209 (390)
T ss_pred             hcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcCcchHHHHHHHHH
Confidence            999999999999999999888776554433332222222233333    46777665554443

>KOG2610|consensus

Probab=97.08  E-value=0.012  Score=50.85  Aligned_cols=116  Identities=13%  Similarity=0.023  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHcc-CCCChhHHHHHHHHHHHhhcc
Q psy9159          95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM-APKDFTLYSLKGRYQYEISKL  173 (259)
Q Consensus        95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l-~P~~~~~~~~lG~~~~~~~~~  173 (259)
                      +.+|....++.|.-.|++--++..--.++...|+..+.          +..++|.+-. +|+.|-+-|.-|..-|-+.. 
T Consensus       119 ~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~----------k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-  187 (491)
T KOG2610|consen  119 HHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGK----------KNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-  187 (491)
T ss_pred             ccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhh----------hhHHHHhccccCCCCcHHHHHHHHHHhhHHH-
Confidence            44777788899999999988877777777777776543          3456777765 88887776776754443322 


Q ss_pred             chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159         174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA  238 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~ka  238 (259)
                                      .|-|++|.+.-++|+++|| +..-+...++.++...|+++++.+.+.+-
T Consensus       188 ----------------~g~y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  188 ----------------CGIYDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             ----------------hccchhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence                            3889999999999999999 56667778899999999999999998775

>smart00028 TPR Tetratricopeptide repeats

Probab=97.07  E-value=0.0012  Score=35.35  Aligned_cols=32  Identities=22%  Similarity=0.482  Sum_probs=29.3

Q ss_pred             HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         213 ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       213 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      .++..+|.++..+|++++|+.+++++++++|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            46789999999999999999999999999875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0551|consensus

Probab=97.06  E-value=0.0088  Score=51.49  Aligned_cols=82  Identities=22%  Similarity=0.338  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHccCCCChh----HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhH
Q psy9159         140 VVFRDQMNKAIQMAPKDFT----LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQ  215 (259)
Q Consensus       140 ~~a~~~~~kAl~l~P~~~~----~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~  215 (259)
                      ..|...|.++|+.+-.|+.    .|.+.+.+.+.+                    |+|..|+.-..+|+.++| .+..++
T Consensus        98 k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l--------------------~NyRs~l~Dcs~al~~~P-~h~Ka~  156 (390)
T KOG0551|consen   98 KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL--------------------GNYRSALNDCSAALKLKP-THLKAY  156 (390)
T ss_pred             HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH--------------------HHHHHHHHHHHHHHhcCc-chhhhh
Confidence            3677899999987666554    355555554443                    789999999999999999 678888


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         216 LLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       216 ~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                      ..=|.|+..+.++++|..|++..++++
T Consensus       157 ~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  157 IRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence            888999999999999999999998876

>KOG1586|consensus

Probab=97.05  E-value=0.1  Score=43.09  Aligned_cols=62  Identities=13%  Similarity=0.049  Sum_probs=49.9

Q ss_pred             CcHHHHHHHHHHHHhhCCCCcH------HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         191 PTAEDAIANCLKAEELAPAPWK------ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~~------~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                      ++|.+||+.|++.....-+++.      ...+.-|.|++...+.-.+...+++-.+++|...+.+++-
T Consensus       168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREck  235 (288)
T KOG1586|consen  168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECK  235 (288)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHH
Confidence            7899999999998876542221      2356677888888999999999999999999999887754

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.065  Score=45.62  Aligned_cols=115  Identities=17%  Similarity=0.145  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHH---H--HHHHh
Q psy9159          96 LQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKG---R--YQYEI  170 (259)
Q Consensus        96 ~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG---~--~~~~~  170 (259)
                      .+|...+..++..+|++.++...++.++...|+.+.+              +..|...|.+...--..|   +  ++.+.
T Consensus       151 ~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A--------------~~iL~~lP~~~~~~~~~~l~a~i~ll~qa  216 (304)
T COG3118         151 GEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAA--------------QAILAALPLQAQDKAAHGLQAQIELLEQA  216 (304)
T ss_pred             hhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHH--------------HHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence            4999999999999999999999999999999887633              444666676554433333   1  11111


Q ss_pred             hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      ..                 .++    +..+++.+.-+| ++..+.+.+|..+...|+.++|.+.+-..+..+-...
T Consensus       217 a~-----------------~~~----~~~l~~~~aadP-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~  270 (304)
T COG3118         217 AA-----------------TPE----IQDLQRRLAADP-DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE  270 (304)
T ss_pred             hc-----------------CCC----HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            11                 122    345677788899 7899999999999999999999999988887754433

>KOG3081|consensus

Probab=97.05  E-value=0.15  Score=42.82  Aligned_cols=132  Identities=12%  Similarity=-0.082  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159          91 SEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI  170 (259)
Q Consensus        91 ~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~  170 (259)
                      +...++-|....++...++.+.  ....+|..+..+.--.   .+   ..++.-.|++.=+.-|-.+......+.++..+
T Consensus       149 k~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~gg---ek---~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~  220 (299)
T KOG3081|consen  149 KMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGG---EK---IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL  220 (299)
T ss_pred             HHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccc---hh---hhhHHHHHHHHhcccCCChHHHccHHHHHHHh
Confidence            3445667777777777777553  3334444443322111   01   12344566666665666666666666666653


Q ss_pred             hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHH-HHHHHHHhcCCCCCccch
Q psy9159         171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKA-VQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA-~~~~~kal~l~p~~~~~~  249 (259)
                                          |+|++|...++.|+.-+| ..+....++-.+-..+|.-.++ .+.+.+.....|..+-.+
T Consensus       221 --------------------~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk  279 (299)
T KOG3081|consen  221 --------------------GRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK  279 (299)
T ss_pred             --------------------cCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence                                899999999999999999 6799999988888888876665 556677777888777654


Q ss_pred             hh
Q psy9159         250 DL  251 (259)
Q Consensus       250 ~~  251 (259)
                      ..
T Consensus       280 ~~  281 (299)
T KOG3081|consen  280 HL  281 (299)
T ss_pred             HH
Confidence            43

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.01  E-value=0.089  Score=44.98  Aligned_cols=163  Identities=17%  Similarity=0.077  Sum_probs=114.1

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      +++..|...+.++-..  .++...+.++..|.......          .+..+|..+++  ...+..++.+.+.+|.++.
T Consensus        55 ~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~----------~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~  120 (292)
T COG0790          55 PDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVS----------RDKTKAADWYR--CAAADGLAEALFNLGLMYA  120 (292)
T ss_pred             ccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCcc----------ccHHHHHHHHH--HHhhcccHHHHHhHHHHHh
Confidence            7899999999988662  33467788888887654332          12568899888  4566778889999998876


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCC-hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD-FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA  203 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~-~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA  203 (259)
                      .-.   ++.   .+..++...|++|.+..-.. ..+.+.+|.++..-. ..            ....-+...|+.+|.+|
T Consensus       121 ~G~---gv~---~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~------------~~~~~~~~~A~~~~~~a  181 (292)
T COG0790         121 NGR---GVP---LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QA------------LAVAYDDKKALYLYRKA  181 (292)
T ss_pred             cCC---Ccc---cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hh------------hcccHHHHhHHHHHHHH
Confidence            432   111   12336788999997774443 345888888775521 00            00012346899999999


Q ss_pred             HhhCCCCcHHhHHHHHHHHHHh----CCHHHHHHHHHHHhcCCC
Q psy9159         204 EELAPAPWKENQLLIAKCYIEA----GEYAKAVQWLDKAKAIPV  243 (259)
Q Consensus       204 i~l~P~~~~~~~~~la~~~~~~----g~~~eA~~~~~kal~l~p  243 (259)
                      -...   .+.+...+|.+|..-    .+..+|..||++|.+...
T Consensus       182 a~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         182 AELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             HHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence            8876   367889999888663    489999999999999875

>KOG1585|consensus

Probab=96.93  E-value=0.065  Score=44.49  Aligned_cols=180  Identities=14%  Similarity=0.104  Sum_probs=102.3

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      .+.+.++...|+ .. .+|++|...+.++++-..+|. .||-.|++|-+.+...       ..++.+.++..++++|..+
T Consensus        31 as~yekAAvafR-nA-k~feKakdcLlkA~~~yEnnr-slfhAAKayEqaamLa-------ke~~klsEvvdl~eKAs~l  100 (308)
T KOG1585|consen   31 ASLYEKAAVAFR-NA-KKFEKAKDCLLKASKGYENNR-SLFHAAKAYEQAAMLA-------KELSKLSEVVDLYEKASEL  100 (308)
T ss_pred             HHHHHHHHHHHH-hh-ccHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHH
Confidence            356788888885 44 899999999999998777664 4567888888777654       4566778888888888776


Q ss_pred             CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh---hHH---HHHHHHHHHhhccchHHHHHHH
Q psy9159         109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF---TLY---SLKGRYQYEISKLSFFERKIAV  182 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~---~~~---~~lG~~~~~~~~~~~~~~~~~~  182 (259)
                      .-++...- .-+.++.+.++..+-    ..=.++++.|++++.+--.+.   .+.   -..|+++.+.            
T Consensus       101 Y~E~Gspd-tAAmaleKAak~len----v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl------------  163 (308)
T KOG1585|consen  101 YVECGSPD-TAAMALEKAAKALEN----VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL------------  163 (308)
T ss_pred             HHHhCCcc-hHHHHHHHHHHHhhc----CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh------------
Confidence            53321110 122333333321100    001245667777765533322   222   2233333332            


Q ss_pred             HHhcCCCCCcHHHHHHHHHHHHhh----CCCCcHHhHHHHHHH--HHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         183 LIVSDLDEPTAEDAIANCLKAEEL----APAPWKENQLLIAKC--YIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       183 ~~~~~~~~g~~~eAi~~~~kAi~l----~P~~~~~~~~~la~~--~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                              .+|+||-..+.|-..+    +. .+......+|.+  |....++..|..+++..-+++.-
T Consensus       164 --------~kf~Eaa~a~lKe~~~~~~~~~-y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f  222 (308)
T KOG1585|consen  164 --------EKFTEAATAFLKEGVAADKCDA-YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF  222 (308)
T ss_pred             --------HHhhHHHHHHHHhhhHHHHHhh-cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc
Confidence                    4566666666654332    22 112222334433  33444777888887777666544

>KOG0529|consensus

Probab=96.92  E-value=0.18  Score=44.74  Aligned_cols=174  Identities=10%  Similarity=0.037  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q psy9159          47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGAN  126 (259)
Q Consensus        47 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~  126 (259)
                      -.++++.-.+.+..+|+-..+|.-.-.++...-..  .+.+..++...+++-+.+...++..+|+...+|+...+++...
T Consensus        45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~--~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~  122 (421)
T KOG0529|consen   45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTR--AQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKN  122 (421)
T ss_pred             chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhh--hcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhC
Confidence            34667777888888888777764433333322110  0134567777899999999999999999999999999999988


Q ss_pred             hchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q psy9159         127 GQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL  206 (259)
Q Consensus       127 ~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l  206 (259)
                      +...-.        .-.+..+++++.||.|-.+|...=.+......                +.+...+=+++.+++|.-
T Consensus       123 p~~~~~--------~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~----------------~~~~~~~El~ftt~~I~~  178 (421)
T KOG0529|consen  123 PHSDWN--------TELQLCEKALKQDPRNFHAWHYRRFVVEQAER----------------SRNLEKEELEFTTKLIND  178 (421)
T ss_pred             CCchHH--------HHHHHHHHHHhcCcccccchHHHHHHHHHHhc----------------ccccchhHHHHHHHHHhc
Confidence            765211        22467799999999999998776544322211                113356668899999999


Q ss_pred             CCCCcHHhHHHHHHHHHHh------CC------HHHHHHHHHHHhcCCCCCcc
Q psy9159         207 APAPWKENQLLIAKCYIEA------GE------YAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       207 ~P~~~~~~~~~la~~~~~~------g~------~~eA~~~~~kal~l~p~~~~  247 (259)
                      ++ .|..+|.++..++..+      |+      ...-++.-..|+-.+|.+..
T Consensus       179 nf-SNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS  230 (421)
T KOG0529|consen  179 NF-SNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQS  230 (421)
T ss_pred             cc-hhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccc
Confidence            99 7788888888777632      31      34456677777778877654

>KOG1941|consensus

Probab=96.87  E-value=0.016  Score=50.65  Aligned_cols=123  Identities=18%  Similarity=0.158  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh------h
Q psy9159          90 ASEKYILQGIEYAKKAMELAPNNS-----NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF------T  158 (259)
Q Consensus        90 ~~~~~~~~A~~~~~kal~~~P~~~-----~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~------~  158 (259)
                      ++...+.+++.+.+-.+++-...+     .++..++.++..++.+.          ++.+.|++|++.--++.      .
T Consensus        94 e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq----------~~Lesfe~A~~~A~~~~D~~LElq  163 (518)
T KOG1941|consen   94 EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQ----------KALESFEKALRYAHNNDDAMLELQ  163 (518)
T ss_pred             HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHH----------HHHHHHHHHHHHhhccCCceeeee
Confidence            455667788888888887765554     23333444444444444          56778888887644433      4


Q ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC----CCc-----HHhHHHHHHHHHHhCCHH
Q psy9159         159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP----APW-----KENQLLIAKCYIEAGEYA  229 (259)
Q Consensus       159 ~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P----~~~-----~~~~~~la~~~~~~g~~~  229 (259)
                      ++..||.++..+                    .++++|.-+..+|.++--    +++     ..+.+.++.++..+|+..
T Consensus       164 vcv~Lgslf~~l--------------------~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lg  223 (518)
T KOG1941|consen  164 VCVSLGSLFAQL--------------------KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLG  223 (518)
T ss_pred             hhhhHHHHHHHH--------------------HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccc
Confidence            678888877765                    568999999999988742    022     234678899999999999


Q ss_pred             HHHHHHHHHhcCC
Q psy9159         230 KAVQWLDKAKAIP  242 (259)
Q Consensus       230 eA~~~~~kal~l~  242 (259)
                      .|.++.+++.++.
T Consensus       224 dA~e~C~Ea~kla  236 (518)
T KOG1941|consen  224 DAMECCEEAMKLA  236 (518)
T ss_pred             cHHHHHHHHHHHH
Confidence            9999999987654

>KOG3824|consensus

Probab=96.87  E-value=0.0028  Score=54.07  Aligned_cols=73  Identities=18%  Similarity=0.181  Sum_probs=59.7

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      ..+..+.  .+ |+.++|..+|+.++...|.+|+++..+|...-.-.+.              -+|-.+|-+|+.++|.|
T Consensus       121 ~~A~~~~--~~-Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~i--------------v~ADq~Y~~ALtisP~n  183 (472)
T KOG3824|consen  121 KAAGRSR--KD-GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEI--------------VEADQCYVKALTISPGN  183 (472)
T ss_pred             HHHHHHH--hc-cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhh--------------HhhhhhhheeeeeCCCc
Confidence            4444555  56 9999999999999999999999998888776554443              49999999999999999


Q ss_pred             hHHHHHHHHH
Q psy9159         113 SNTQKWYGIC  122 (259)
Q Consensus       113 ~~~~~~la~~  122 (259)
                      .+++.+-+..
T Consensus       184 seALvnR~RT  193 (472)
T KOG3824|consen  184 SEALVNRART  193 (472)
T ss_pred             hHHHhhhhcc
Confidence            9998766544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.83  E-value=0.01  Score=45.37  Aligned_cols=49  Identities=20%  Similarity=0.222  Sum_probs=43.3

Q ss_pred             CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                      |++++|+..+++++.++| .+-..|..+-.+|...|+..+|++.|++...
T Consensus        76 ~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   76 GDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             T-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            889999999999999999 7788999999999999999999999998744

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.78  E-value=0.017  Score=40.54  Aligned_cols=75  Identities=11%  Similarity=0.064  Sum_probs=53.9

Q ss_pred             HHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc--HHhHHHHHH
Q psy9159         143 RDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW--KENQLLIAK  220 (259)
Q Consensus       143 ~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~--~~~~~~la~  220 (259)
                      ...++++++.+|++..+.+.++..+...                    |++++|++.+...++.+| ++  -.+.-.|-.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~--------------------g~~e~Al~~Ll~~v~~dr-~~~~~~ar~~ll~   66 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAA--------------------GDYEEALDQLLELVRRDR-DYEDDAARKRLLD   66 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHT--------------------T-HHHHHHHHHHHHCC-T-TCCCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHhCc-cccccHHHHHHHH
Confidence            4667888999999999999999888764                    889999999999999988 44  355666777


Q ss_pred             HHHHhCCHHHHHHHHHHH
Q psy9159         221 CYIEAGEYAKAVQWLDKA  238 (259)
Q Consensus       221 ~~~~~g~~~eA~~~~~ka  238 (259)
                      ++..+|.-+.-..-|++-
T Consensus        67 ~f~~lg~~~plv~~~RRk   84 (90)
T PF14561_consen   67 IFELLGPGDPLVSEYRRK   84 (90)
T ss_dssp             HHHHH-TT-HHHHHHHHH
T ss_pred             HHHHcCCCChHHHHHHHH
Confidence            777777766555555543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.73  E-value=0.1  Score=45.55  Aligned_cols=151  Identities=15%  Similarity=0.173  Sum_probs=90.8

Q ss_pred             CCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhhchhhHHHHHhc
Q psy9159          63 NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN----NSNTQKWYGICVGANGQFQSLKEKIKC  138 (259)
Q Consensus        63 ~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~----~~~~~~~la~~~~~~~~~~~~~~~~~~  138 (259)
                      .....|..++.+....|+              ++-|...+.++...++.    .+.+....+.++...|+...+...+..
T Consensus       144 ~~~~~~l~~a~~aRk~g~--------------~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~  209 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGN--------------FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE  209 (352)
T ss_pred             HHHHHHHHHHHHHHHCCC--------------cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence            334445555555555554              45888888888876622    456666778888888877654433322


Q ss_pred             HHHHHHHHHHHHc-----------------cCCC---------ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCc
Q psy9159         139 GVVFRDQMNKAIQ-----------------MAPK---------DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPT  192 (259)
Q Consensus       139 ~~~a~~~~~kAl~-----------------l~P~---------~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~  192 (259)
                      ...  ..+.+-+.                 ..+.         -+.++..+|.|....             . .....+.
T Consensus       210 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~-------------~-~~~~~~~  273 (352)
T PF02259_consen  210 LLK--CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL-------------Y-SKLSSES  273 (352)
T ss_pred             HHH--HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh-------------c-ccccccc
Confidence            110  01111000                 0000         112344444443332             0 0112478


Q ss_pred             HHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCH-----------------HHHHHHHHHHhcCCCC
Q psy9159         193 AEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEY-----------------AKAVQWLDKAKAIPVV  244 (259)
Q Consensus       193 ~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~-----------------~eA~~~~~kal~l~p~  244 (259)
                      .++++..|++|++++| .+..+|..+|..+...=+.                 ..|++.|-+++.+.|.
T Consensus       274 ~~~~~~~~~~a~~~~~-~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  274 SDEILKYYKEATKLDP-SWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHHHHHHHHhCh-hHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            9999999999999999 7888999999887666221                 3489999999999877

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.71  E-value=0.011  Score=37.00  Aligned_cols=41  Identities=27%  Similarity=0.381  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy9159          66 DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYG  120 (259)
Q Consensus        66 ~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la  120 (259)
                      +.++.+|..+..+|++.              +|+.+++.+|+++|+|..+.....
T Consensus         2 d~lY~lAig~ykl~~Y~--------------~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYE--------------KARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHHHTT-HH--------------HHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHH--------------HHHHHHHHHHhhCCCcHHHHHHHH
Confidence            45788999999999875              999999999999999998764443

>KOG2047|consensus

Probab=96.69  E-value=0.22  Score=46.75  Aligned_cols=168  Identities=10%  Similarity=0.028  Sum_probs=82.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChH---------H
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSN---------T  115 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~---------~  115 (259)
                      |+.+.|...++++.+..=..++   -|+.+++..+.-       +-+.+.++.|+...++|... |.++.         +
T Consensus       401 ~~l~~aRvifeka~~V~y~~v~---dLa~vw~~waem-------Elrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pv  469 (835)
T KOG2047|consen  401 GDLDDARVIFEKATKVPYKTVE---DLAEVWCAWAEM-------ELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPV  469 (835)
T ss_pred             CcHHHHHHHHHHhhcCCccchH---HHHHHHHHHHHH-------HHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcH
Confidence            5555555555555554332222   233444433321       24567788999999888654 55533         1


Q ss_pred             HHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHH
Q psy9159         116 QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAED  195 (259)
Q Consensus       116 ~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e  195 (259)
                      ...+-..+..-..+....+..+....-+..|++.|.|---.|..-.+.|.++-+.                    .-+++
T Consensus       470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh--------------------~yfee  529 (835)
T KOG2047|consen  470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH--------------------KYFEE  529 (835)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------------------HHHHH
Confidence            1111111110111111122233333456788899988888888888888766443                    22466


Q ss_pred             HHHHHHHHHhhCCC-CcHHhHHH-HH--HHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159         196 AIANCLKAEELAPA-PWKENQLL-IA--KCYIEAGEYAKAVQWLDKAKAIPV  243 (259)
Q Consensus       196 Ai~~~~kAi~l~P~-~~~~~~~~-la--~~~~~~g~~~eA~~~~~kal~l~p  243 (259)
                      |.+.|+|.|.+-|- ...+.|.. |-  .......+.+.|...|++|++.-|
T Consensus       530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence            66666666665430 11122221 11  111112245566666666665444

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.69  E-value=0.0047  Score=34.06  Aligned_cols=33  Identities=36%  Similarity=0.588  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          66 DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        66 ~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      ++++++|.++...|+..              +|+..+++.++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~--------------~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYD--------------EAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHH--------------HHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHH--------------HHHHHHHHHHHHCcCC
Confidence            57899999999988865              9999999999999974

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.66  E-value=0.011  Score=41.55  Aligned_cols=53  Identities=19%  Similarity=0.135  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         195 DAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       195 eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                      ..+..++++++.+| ++..+.+.+|..++..|++++|++.+-.++..+++..++
T Consensus         6 ~~~~al~~~~a~~P-~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~   58 (90)
T PF14561_consen    6 PDIAALEAALAANP-DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDD   58 (90)
T ss_dssp             HHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCC
T ss_pred             ccHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccccc
Confidence            34678899999999 778999999999999999999999999999999887543

>KOG1550|consensus

Probab=96.66  E-value=0.081  Score=49.76  Aligned_cols=156  Identities=17%  Similarity=0.036  Sum_probs=106.5

Q ss_pred             CCHHHHHHHHHHHhh-------cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHH
Q psy9159          45 DDKAKAYNLTMELNN-------KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQK  117 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~-------~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~  117 (259)
                      ++.+.|+..++.+..       ..  ++.+.+.+|.+|.......        .. +.+.|+.++.++-...  ++.+.+
T Consensus       263 ~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~--------~~-d~~~A~~~~~~aA~~g--~~~a~~  329 (552)
T KOG1550|consen  263 QDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVE--------KI-DYEKALKLYTKAAELG--NPDAQY  329 (552)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCc--------cc-cHHHHHHHHHHHHhcC--CchHHH
Confidence            689999999998876       32  5567788999999865332        00 4568999999998876  566778


Q ss_pred             HHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHH
Q psy9159         118 WYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAI  197 (259)
Q Consensus       118 ~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi  197 (259)
                      .+|.++..-. .      -.+..+|.++|..|.  .-.+..+.+.+|.+|..                |.....+.+.|.
T Consensus       330 ~lg~~~~~g~-~------~~d~~~A~~yy~~Aa--~~G~~~A~~~la~~y~~----------------G~gv~r~~~~A~  384 (552)
T KOG1550|consen  330 LLGVLYETGT-K------ERDYRRAFEYYSLAA--KAGHILAIYRLALCYEL----------------GLGVERNLELAF  384 (552)
T ss_pred             HHHHHHHcCC-c------cccHHHHHHHHHHHH--HcCChHHHHHHHHHHHh----------------CCCcCCCHHHHH
Confidence            8888876443 1      112235677887774  44688899999987754                222246789999


Q ss_pred             HHHHHHHhhCCCCcHHhHHHHHHHHHHh-CCHHHHHHHHHHHhcC
Q psy9159         198 ANCLKAEELAPAPWKENQLLIAKCYIEA-GEYAKAVQWLDKAKAI  241 (259)
Q Consensus       198 ~~~~kAi~l~P~~~~~~~~~la~~~~~~-g~~~eA~~~~~kal~l  241 (259)
                      .+|++|.+.++   +.+...++..+... ++++.+.-.+....++
T Consensus       385 ~~~k~aA~~g~---~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~  426 (552)
T KOG1550|consen  385 AYYKKAAEKGN---PSAAYLLGAFYEYGVGRYDTALALYLYLAEL  426 (552)
T ss_pred             HHHHHHHHccC---hhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence            99999999874   44455556555444 6666665555444443

>KOG4340|consensus

Probab=96.63  E-value=0.07  Score=45.61  Aligned_cols=134  Identities=11%  Similarity=0.106  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC--------------
Q psy9159          91 SEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD--------------  156 (259)
Q Consensus        91 ~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~--------------  156 (259)
                      +.+.+++|+.-|+.|++...-++..-++++.+..+.+++..+.+.+.      +..++.++-.|..              
T Consensus       156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iS------EIieRG~r~HPElgIGm~tegiDvrsv  229 (459)
T KOG4340|consen  156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHIS------EIIERGIRQHPELGIGMTTEGIDVRSV  229 (459)
T ss_pred             ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHH------HHHHhhhhcCCccCccceeccCchhcc
Confidence            34556799999999999988888888888888888888876654432      4446666666541              


Q ss_pred             --hh---------HHHHHHHHHHHhhccchHHHHHHHHHhcCCC-------------------CCcHHHHHHHHHHHHhh
Q psy9159         157 --FT---------LYSLKGRYQYEISKLSFFERKIAVLIVSDLD-------------------EPTAEDAIANCLKAEEL  206 (259)
Q Consensus       157 --~~---------~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~g~~~eAi~~~~kAi~l  206 (259)
                        +.         +......++++.++.+    +...++...||                   .+++.+...-+.=.+++
T Consensus       230 gNt~~lh~Sal~eAfNLKaAIeyq~~n~e----AA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~  305 (459)
T KOG4340|consen  230 GNTLVLHQSALVEAFNLKAAIEYQLRNYE----AAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQ  305 (459)
T ss_pred             cchHHHHHHHHHHHhhhhhhhhhhcccHH----HHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhc
Confidence              11         1222223333333321    11122222222                   36677777777778888


Q ss_pred             CCCCcHHhHHHHHHHHHHhCCHHHHHHHH
Q psy9159         207 APAPWKENQLLIAKCYIEAGEYAKAVQWL  235 (259)
Q Consensus       207 ~P~~~~~~~~~la~~~~~~g~~~eA~~~~  235 (259)
                      +| ...+..-++-.+|++..=|+-|...+
T Consensus       306 nP-fP~ETFANlLllyCKNeyf~lAADvL  333 (459)
T KOG4340|consen  306 NP-FPPETFANLLLLYCKNEYFDLAADVL  333 (459)
T ss_pred             CC-CChHHHHHHHHHHhhhHHHhHHHHHH
Confidence            88 77788888888888877777665543

>KOG1941|consensus

Probab=96.57  E-value=0.094  Score=45.99  Aligned_cols=171  Identities=12%  Similarity=0.048  Sum_probs=103.3

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHH---HHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHH
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRL---AKACHCLYDIKRRENDKEASEKYILQGIEYAKKA  105 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l---a~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~ka  105 (259)
                      +.-++.+-+++  .. .++++|+....+.+..-.+.-+-+..+   ..+...+|.+.          +.+.-|.....-+
T Consensus         7 k~q~~~g~~Ly--~s-~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~----------~mL~~a~sqi~~a   73 (518)
T KOG1941|consen    7 KKQIEKGLQLY--QS-NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYK----------EMLKFAVSQIDTA   73 (518)
T ss_pred             HHHHHHHHhHh--cC-chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHH----------HHHHHHHHHHHHH
Confidence            34567788888  67 899999999998887543333222222   33344444432          2223333333334


Q ss_pred             HHhCCCC--hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh-----hHHHHHHHHHHHhhccchHHH
Q psy9159         106 MELAPNN--SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF-----TLYSLKGRYQYEISKLSFFER  178 (259)
Q Consensus       106 l~~~P~~--~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~-----~~~~~lG~~~~~~~~~~~~~~  178 (259)
                      .+.+-..  -+++.+++.....+.++.          +.+.+-+..+.+..+.+     .++..+|+.+..+        
T Consensus        74 ~~~~ds~~~~ea~lnlar~~e~l~~f~----------kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgl--------  135 (518)
T KOG1941|consen   74 RELEDSDFLLEAYLNLARSNEKLCEFH----------KTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGL--------  135 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhH--------
Confidence            3333221  122333333333333333          34455555566554444     3455566666554        


Q ss_pred             HHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC-----CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         179 KIAVLIVSDLDEPTAEDAIANCLKAEELAPA-----PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       179 ~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~-----~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                                  +.++.+++.|++|+...-+     --.+++..||..+..++++++|.-+..||.++-
T Consensus       136 ------------s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv  192 (518)
T KOG1941|consen  136 ------------SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV  192 (518)
T ss_pred             ------------HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence                        6689999999999987431     113578999999999999999999999998864

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.55  E-value=0.0048  Score=35.28  Aligned_cols=29  Identities=28%  Similarity=0.129  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC
Q psy9159         159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA  207 (259)
Q Consensus       159 ~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~  207 (259)
                      +|..||.+|...                    |++++|+++|++++.+.
T Consensus         1 al~~Lg~~~~~~--------------------g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQ--------------------GDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHC--------------------T-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhc
Confidence            478899999875                    88999999999976654

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.55  E-value=0.14  Score=44.67  Aligned_cols=121  Identities=9%  Similarity=-0.125  Sum_probs=79.4

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhhchhh--HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHH
Q psy9159         100 EYAKKAMELAPNNSNTQKWYGICVGANGQFQS--LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFE  177 (259)
Q Consensus       100 ~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~--~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~  177 (259)
                      .-+.+.+.-+|+|.++|..+............  .......++.-+..|++||+.+|++...+..+=....+.       
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~-------   78 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV-------   78 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-------
Confidence            34788899999999999888776655543222  112222233446889999999998887766655444433       


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHH-HHHHHhC--CHHHHHHHHHHHhcC
Q psy9159         178 RKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIA-KCYIEAG--EYAKAVQWLDKAKAI  241 (259)
Q Consensus       178 ~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la-~~~~~~g--~~~eA~~~~~kal~l  241 (259)
                                   ..-++..+-+++++..+| ++...|...- .......  .+.+....|.++++.
T Consensus        79 -------------~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~  131 (321)
T PF08424_consen   79 -------------WDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA  131 (321)
T ss_pred             -------------CCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence                         346777888999999999 5666554322 2222222  466777777777663

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.54  E-value=0.08  Score=38.43  Aligned_cols=45  Identities=20%  Similarity=0.205  Sum_probs=25.9

Q ss_pred             HHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         196 AIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       196 Ai~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                      |+++|.+++.+.| +.+...+.||.=+-...-|++++.-.++++..
T Consensus        63 sve~~s~a~~Lsp-~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   63 SVECFSRAVELSP-DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             hHHHHHHHhccCh-hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            4556666666666 44555555555555555556666666665553

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.42  E-value=0.0046  Score=38.81  Aligned_cols=40  Identities=23%  Similarity=0.234  Sum_probs=30.7

Q ss_pred             hHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhh
Q psy9159         214 NQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLST  253 (259)
Q Consensus       214 ~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~  253 (259)
                      ..+.+|..+.++|++++|.++.+.+++++|+|.....+..
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            4577888889999999999999999999988876655543

>KOG3824|consensus

Probab=96.37  E-value=0.01  Score=50.78  Aligned_cols=57  Identities=23%  Similarity=0.094  Sum_probs=54.3

Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      .|+.++|...|+.|+.++| .++++...+|......++.-+|-.+|-+|+.++|.|.+
T Consensus       129 ~Gk~ekA~~lfeHAlalaP-~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse  185 (472)
T KOG3824|consen  129 DGKLEKAMTLFEHALALAP-TNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE  185 (472)
T ss_pred             ccchHHHHHHHHHHHhcCC-CCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence            4999999999999999999 78999999999999999999999999999999999875

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.17  Score=46.89  Aligned_cols=139  Identities=12%  Similarity=0.058  Sum_probs=96.5

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHH--HHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRL--AKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGIC  122 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~l--a~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~  122 (259)
                      +.-.-++..+...+..+|.+++++...  ...+...+..              ..+......++..+|++..++.+++.+
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~L~~a  110 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADS--------------TLAFLAKRIPLSVNPENCPAVQNLAAA  110 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccc--------------hhHHHHHhhhHhcCcccchHHHHHHHH
Confidence            344447777888888999999986443  3333334433              267778889999999999999999998


Q ss_pred             HHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q psy9159         123 VGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLK  202 (259)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~k  202 (259)
                      +...+....+         +....+.+....|++..+...+-++|. ++++   ...          .|+..++....++
T Consensus       111 le~~~~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~---~~~----------l~~~~~~~~~l~~  167 (620)
T COG3914         111 LELDGLQFLA---------LADISEIAEWLSPDNAEFLGHLIRFYQ-LGRY---LKL----------LGRTAEAELALER  167 (620)
T ss_pred             HHHhhhHHHH---------HHHHHHHHHhcCcchHHHHhhHHHHHH-HHHH---HHH----------hccHHHHHHHHHH
Confidence            8775544321         234456688999999988777755443 3221   000          2888999999999


Q ss_pred             HHhhCCCCcHHhHHHHHHH
Q psy9159         203 AEELAPAPWKENQLLIAKC  221 (259)
Q Consensus       203 Ai~l~P~~~~~~~~~la~~  221 (259)
                      +.++.| .++++...+...
T Consensus       168 ~~d~~p-~~~~~~~~~~~~  185 (620)
T COG3914         168 AVDLLP-KYPRVLGALMTA  185 (620)
T ss_pred             HHHhhh-hhhhhHhHHHHH
Confidence            999999 666665544444

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.34  E-value=0.0081  Score=49.21  Aligned_cols=57  Identities=23%  Similarity=0.253  Sum_probs=53.6

Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      .++.+-|.+.|.+|+++-| .|...|+.+|....+.|+++.|...|++.++++|.+.-
T Consensus         8 ~~D~~aaaely~qal~lap-~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           8 SGDAEAAAELYNQALELAP-EWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             cCChHHHHHHHHHHhhcCc-hhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            4889999999999999999 89999999999999999999999999999999987643

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.33  E-value=0.18  Score=37.16  Aligned_cols=97  Identities=12%  Similarity=0.101  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChh
Q psy9159          91 SEKYILQGIEYAKKAMELAPN------------NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT  158 (259)
Q Consensus        91 ~~~~~~~A~~~~~kal~~~P~------------~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~  158 (259)
                      ..+.+++|..-|++|++...+            ++.+|.+|+.++..+|.|+......   ..++.++.+==+|+-+...
T Consensus        21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA---~~aL~YFNRRGEL~qdeGk   97 (144)
T PF12968_consen   21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSA---DRALRYFNRRGELHQDEGK   97 (144)
T ss_dssp             HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHH---HHHHHHHHHH--TTSTHHH
T ss_pred             HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHH---HHHHHHHhhccccccccch
Confidence            345678999999999987644            4567888999999999998655433   3556777766667766655


Q ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q psy9159         159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL  206 (259)
Q Consensus       159 ~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l  206 (259)
                      .|..  .++.+         +++  +-+   +|+.++|+..|+.+.++
T Consensus        98 lWIa--aVfsr---------a~A--l~~---~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   98 LWIA--AVFSR---------AVA--LEG---LGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHH--HHHHH---------HHH--HHH---TT-HHHHHHHHHHHHHH
T ss_pred             hHHH--HHHHH---------HHH--HHh---cCChHHHHHHHHHHHHH
Confidence            5533  22221         111  111   49999999999999875

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2396|consensus

Probab=96.27  E-value=0.058  Score=49.00  Aligned_cols=90  Identities=12%  Similarity=0.122  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchH
Q psy9159          97 QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFF  176 (259)
Q Consensus        97 ~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~  176 (259)
                      .=...|++|...-|.++..|..+.......+.+.          +....+.+++..+|+++..|..-+.|.++.+.    
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~----------~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~----  154 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYG----------EVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL----  154 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchh----------HHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc----
Confidence            4457899999999999988876655444444333          34578899999999999999999999988632    


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHH
Q psy9159         177 ERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQL  216 (259)
Q Consensus       177 ~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~  216 (259)
                                     +.+-|...|.+++..+| +.+..|.
T Consensus       155 ---------------ni~saRalflrgLR~np-dsp~Lw~  178 (568)
T KOG2396|consen  155 ---------------NIESARALFLRGLRFNP-DSPKLWK  178 (568)
T ss_pred             ---------------chHHHHHHHHHHhhcCC-CChHHHH
Confidence                           38999999999999999 7776543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.25  E-value=0.64  Score=39.69  Aligned_cols=159  Identities=13%  Similarity=0.081  Sum_probs=86.0

Q ss_pred             CCcCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhhchhcccC-cHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-
Q psy9159          42 GKKDDKAKAYNLTMELNNKQ-PNDPDVLYRLAKACHCLYDIKRREN-DKEASEKYILQGIEYAKKAMELAPNNSNTQKW-  118 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~~~~-~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~-  118 (259)
                      .. |+++.|..++.++-... .-+|+..-.++.+++..|...-... +.+.....+.+|.+++++.-+.+...+++.-. 
T Consensus         5 ~~-~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    5 KQ-GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hh-CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            45 99999999999997665 6677777889999998886442222 33444555555555554433334444444222 


Q ss_pred             ------HHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC-CCC
Q psy9159         119 ------YGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL-DEP  191 (259)
Q Consensus       119 ------la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-~~g  191 (259)
                            ++.++...+..++       ..++...++-+-.-.|+.+..+...=.++...++.+.+++.+..++.... ...
T Consensus        84 ~~iL~~La~~~l~~~~~~~-------~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~  156 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYES-------VEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSES  156 (278)
T ss_pred             HHHHHHHHHHHHcCCChHH-------HHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccc
Confidence                  2333322233222       12344555555566788777765544444443333333333333333222 234


Q ss_pred             cHHHHHHHHHHHHhhCC
Q psy9159         192 TAEDAIANCLKAEELAP  208 (259)
Q Consensus       192 ~~~eAi~~~~kAi~l~P  208 (259)
                      .++.++.++.+..+.+|
T Consensus       157 ~~~~~l~~i~~l~~~~~  173 (278)
T PF08631_consen  157 NFDSILHHIKQLAEKSP  173 (278)
T ss_pred             hHHHHHHHHHHHHhhCc
Confidence            45555555555555544

It is also involved in sporulation [].

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.072  Score=49.23  Aligned_cols=121  Identities=12%  Similarity=-0.094  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHhCCCChHHHHHH--HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc
Q psy9159          97 QGIEYAKKAMELAPNNSNTQKWY--GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS  174 (259)
Q Consensus        97 ~A~~~~~kal~~~P~~~~~~~~l--a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~  174 (259)
                      -|+..+...+.++|.++..+...  ...+...+...          .+.-....++..||++..+..+||......+   
T Consensus        49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~---  115 (620)
T COG3914          49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADST----------LAFLAKRIPLSVNPENCPAVQNLAAALELDG---  115 (620)
T ss_pred             HHHHHHHccCccCCCCHHHHHHHHHHhhccccccch----------hHHHHHhhhHhcCcccchHHHHHHHHHHHhh---
Confidence            46677777788999999875333  33333333332          2334567889999999999999998654421   


Q ss_pred             hHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHH------HHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         175 FFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI------AKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~l------a~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                                      +.+.-++.+-+.+....| ++......+      +..+..+|+..++.....++..+.|.++.
T Consensus       116 ----------------~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~  177 (620)
T COG3914         116 ----------------LQFLALADISEIAEWLSP-DNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR  177 (620)
T ss_pred             ----------------hHHHHHHHHHHHHHhcCc-chHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence                            335555666666999999 777776666      99999999999999999999999998864

>smart00028 TPR Tetratricopeptide repeats

Probab=96.02  E-value=0.013  Score=30.99  Aligned_cols=33  Identities=45%  Similarity=0.689  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          66 DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        66 ~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      .+++.+|.++..++++.              +|...++++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~--------------~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYD--------------EALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHH--------------HHHHHHHHHHccCCCC
Confidence            56788999999988875              9999999999999864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4507|consensus

Probab=96.01  E-value=0.064  Score=49.69  Aligned_cols=92  Identities=13%  Similarity=0.081  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHhCCCChHH-HHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc
Q psy9159          96 LQGIEYAKKAMELAPNNSNT-QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS  174 (259)
Q Consensus        96 ~~A~~~~~kal~~~P~~~~~-~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~  174 (259)
                      -.|...+++|+...|....+ ..+++.++...+...          +|-..+..+|.++-..|..++.+|+.+.-+    
T Consensus       624 ~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~----------da~~~l~q~l~~~~sepl~~~~~g~~~l~l----  689 (886)
T KOG4507|consen  624 TFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHL----------DATKLLLQALAINSSEPLTFLSLGNAYLAL----  689 (886)
T ss_pred             HHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhc----------cHHHHHHHHHhhcccCchHHHhcchhHHHH----
Confidence            46677777777777654433 345555555444322          344556666777766677777777766554    


Q ss_pred             hHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHH
Q psy9159         175 FFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI  218 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~l  218 (259)
                                      .+.+.|+++|+.|++++| +++.....|
T Consensus       690 ----------------~~i~~a~~~~~~a~~~~~-~~~~~~~~l  716 (886)
T KOG4507|consen  690 ----------------KNISGALEAFRQALKLTT-KCPECENSL  716 (886)
T ss_pred             ----------------hhhHHHHHHHHHHHhcCC-CChhhHHHH
Confidence                            456777777777777777 555544443

>KOG2047|consensus

Probab=95.92  E-value=1  Score=42.57  Aligned_cols=166  Identities=13%  Similarity=0.040  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHHhh-cCCCC-----HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC----hH
Q psy9159          45 DDKAKAYNLTMELNN-KQPND-----PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN----SN  114 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~-~~p~~-----~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~----~~  114 (259)
                      |+..+-+..|.++++ .+|.-     ...|..+|+.|-..|+.              +.|+..+++|+...=.-    +.
T Consensus       361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l--------------~~aRvifeka~~V~y~~v~dLa~  426 (835)
T KOG2047|consen  361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDL--------------DDARVIFEKATKVPYKTVEDLAE  426 (835)
T ss_pred             CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcH--------------HHHHHHHHHhhcCCccchHHHHH
Confidence            778888888888865 45543     34566677777766665              49999999999876332    22


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChh-HHHH-----HHHHHHHhhccchHHHHHHHHHhcCC
Q psy9159         115 TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT-LYSL-----KGRYQYEISKLSFFERKIAVLIVSDL  188 (259)
Q Consensus       115 ~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~-~~~~-----lG~~~~~~~~~~~~~~~~~~~~~~~~  188 (259)
                      +|...|..-.+-.++.          .|....++|..+ |+++. .++.     -.+++.+ ..++.+.--+...     
T Consensus       427 vw~~waemElrh~~~~----------~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrS-lkiWs~y~DleEs-----  489 (835)
T KOG2047|consen  427 VWCAWAEMELRHENFE----------AALKLMRRATHV-PTNPELEYYDNSEPVQARLHRS-LKIWSMYADLEES-----  489 (835)
T ss_pred             HHHHHHHHHHhhhhHH----------HHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHh-HHHHHHHHHHHHH-----
Confidence            3322222222222222          345666666544 44432 1111     1111111 1111111111111     


Q ss_pred             CCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159         189 DEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV  243 (259)
Q Consensus       189 ~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p  243 (259)
                       .|.++.-...|.+.+++.= -.+..-.+.|..+....-+++|-+.|+|.+.+-|
T Consensus       490 -~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk  542 (835)
T KOG2047|consen  490 -LGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFK  542 (835)
T ss_pred             -hccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence             2789999999999999875 4567778889999999999999999999999864

>KOG2396|consensus

Probab=95.87  E-value=0.19  Score=45.82  Aligned_cols=96  Identities=11%  Similarity=0.016  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh
Q psy9159          48 AKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANG  127 (259)
Q Consensus        48 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~  127 (259)
                      .+...+|+.++...+.|+..|.+...-+...+.+.              +-...|.+++...|++++.|..-|.-....+
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~--------------~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n  153 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYG--------------EVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN  153 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchh--------------HHHHHHHHHHHhCCCCchhHHhhhhhHHhhc
Confidence            34566899999999999999887766555555554              6677899999999999998754443333222


Q ss_pred             chhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHH
Q psy9159         128 QFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY  166 (259)
Q Consensus       128 ~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~  166 (259)
                      .         +...+...+.++|+.+|+++..|...=++
T Consensus       154 ~---------ni~saRalflrgLR~npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  154 L---------NIESARALFLRGLRFNPDSPKLWKEYFRM  183 (568)
T ss_pred             c---------chHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence            1         12246788899999999999888665443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.73  E-value=0.12  Score=39.31  Aligned_cols=61  Identities=11%  Similarity=0.235  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh
Q psy9159          94 YILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF  157 (259)
Q Consensus        94 ~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~  157 (259)
                      .+++|+..+++++.++|.+-.+|..+-.++...|+...+...+..   ....+.+-+-+.|+..
T Consensus        77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~---~~~~l~~elg~~Ps~~  137 (146)
T PF03704_consen   77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYER---YRRRLREELGIEPSPE  137 (146)
T ss_dssp             -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH---HHHHHHHHHS----HH
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH---HHHHHHHHhCcCcCHH
Confidence            456999999999999999999999999999999998866554443   3355555666767643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.73  E-value=0.016  Score=33.66  Aligned_cols=30  Identities=27%  Similarity=0.412  Sum_probs=26.1

Q ss_pred             HHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         212 KENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       212 ~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                      ..++.+||.+|..+|++++|++++++++++
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            356889999999999999999999999874

>KOG0529|consensus

Probab=95.72  E-value=0.27  Score=43.72  Aligned_cols=144  Identities=7%  Similarity=-0.049  Sum_probs=100.9

Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q psy9159          46 DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGA  125 (259)
Q Consensus        46 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~  125 (259)
                      -.++-+.+.+.+++.+|++..+|+-...++...+..            .+..-+..+++++++||.|..+|..--.+.+.
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~------------~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~  157 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS------------DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQ  157 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc------------hHHHHHHHHHHHHhcCcccccchHHHHHHHHH
Confidence            455667789999999999999999999998876654            24577999999999999999999776666665


Q ss_pred             hhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhc-CCCCCcHHHHHHHHHHHH
Q psy9159         126 NGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVS-DLDEPTAEDAIANCLKAE  204 (259)
Q Consensus       126 ~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~eAi~~~~kAi  204 (259)
                      ......      ....-.++.+++|.-|+.|..+|+....+.-.+-..         -..| ..+......-++.-..|+
T Consensus       158 ~~~~~~------~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~---------~~~g~~~~~~~l~sEle~v~sai  222 (421)
T KOG0529|consen  158 AERSRN------LEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPK---------EADGNFMPKELLQSELEMVHSAI  222 (421)
T ss_pred             Hhcccc------cchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccc---------cccCccCCHHHHHHHHHHHHHHH
Confidence            543311      001224677888999999999999988766433110         0001 011123566677888888


Q ss_pred             hhCCCCcHHhHHH
Q psy9159         205 ELAPAPWKENQLL  217 (259)
Q Consensus       205 ~l~P~~~~~~~~~  217 (259)
                      =.+| +...+|++
T Consensus       223 FTdp-~DqS~WfY  234 (421)
T KOG0529|consen  223 FTDP-EDQSCWFY  234 (421)
T ss_pred             hcCc-cccceeee
Confidence            8999 45666666

>PRK10941 hypothetical protein; Provisional

Probab=95.66  E-value=0.072  Score=45.26  Aligned_cols=61  Identities=13%  Similarity=-0.138  Sum_probs=56.0

Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL  251 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~  251 (259)
                      .++++.|+.+.+..+.++| +.+.-+..+|.+|..+|.+..|...++..++.-|++++...+
T Consensus       194 ~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i  254 (269)
T PRK10941        194 EKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI  254 (269)
T ss_pred             cCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence            5999999999999999999 667779999999999999999999999999999998875543

>KOG3364|consensus

Probab=95.48  E-value=0.058  Score=40.58  Aligned_cols=63  Identities=14%  Similarity=0.163  Sum_probs=52.9

Q ss_pred             CCcHHHHHHHHHHHHh-hCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         190 EPTAEDAIANCLKAEE-LAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~-l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                      ..+..+.|..++..++ -.|...-+..++||..+.++|+|++|+++.+..++.+|+|+....+-
T Consensus        48 ~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   48 TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            3678999999999997 55644445678899999999999999999999999999998765543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.38  E-value=1.4  Score=38.32  Aligned_cols=148  Identities=12%  Similarity=0.040  Sum_probs=92.7

Q ss_pred             CCcCCHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC------
Q psy9159          42 GKKDDKAKAYNLTMELNNKQP----NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN------  111 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~------  111 (259)
                      .. |.++-|...+.++...++    ..|.+.+..++.....|+..              +|+..++..++....      
T Consensus       158 k~-g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~--------------~Ai~~L~~~~~~~~~~~~~~~  222 (352)
T PF02259_consen  158 KA-GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQE--------------EAIQKLRELLKCRLSKNIDSI  222 (352)
T ss_pred             HC-CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHHhhhccccc
Confidence            55 999999999999887542    25777778888888888754              666666666651111      


Q ss_pred             ---------------------ChHHHHHHHHHHHHhhchhhHHH---HHhcHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q psy9159         112 ---------------------NSNTQKWYGICVGANGQFQSLKE---KIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQ  167 (259)
Q Consensus       112 ---------------------~~~~~~~la~~~~~~~~~~~~~~---~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~  167 (259)
                                           ........+.++...|++.....   .......+...|.+|++++|+...+|+..|..+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~  302 (352)
T PF02259_consen  223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN  302 (352)
T ss_pred             cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence                                 11112334555555555433220   113344678899999999999999999999988


Q ss_pred             HHhhccchHHHH-HHHHHhcCCCCCcHHHHHHHHHHHHhhCC
Q psy9159         168 YEISKLSFFERK-IAVLIVSDLDEPTAEDAIANCLKAEELAP  208 (259)
Q Consensus       168 ~~~~~~~~~~~~-~~~~~~~~~~~g~~~eAi~~~~kAi~l~P  208 (259)
                      ...-....-... .....    ...-...|+.+|-+|+.+.|
T Consensus       303 ~~~~~~~~~~~~~~~~~~----~~~~~~~ai~~y~~al~~~~  340 (352)
T PF02259_consen  303 DKLLESDPREKEESSQED----RSEYLEQAIEGYLKALSLGS  340 (352)
T ss_pred             HHHHHhhhhcccccchhH----HHHHHHHHHHHHHHHHhhCC
Confidence            765221110000 00000    00124779999999999999

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2471|consensus

Probab=95.37  E-value=0.094  Score=47.63  Aligned_cols=128  Identities=15%  Similarity=0.034  Sum_probs=82.1

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHH-HHHhCCC------ChH--HHHHHHHHHHH
Q psy9159          55 MELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKK-AMELAPN------NSN--TQKWYGICVGA  125 (259)
Q Consensus        55 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~k-al~~~P~------~~~--~~~~la~~~~~  125 (259)
                      +.+....-+++..++..+..++.+|++.              +|...+.. -+...|.      -..  .|.++|-+..+
T Consensus       230 K~vmn~a~~s~~~l~LKsq~eY~~gn~~--------------kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~  295 (696)
T KOG2471|consen  230 KHVMNIAQDSSMALLLKSQLEYAHGNHP--------------KAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ  295 (696)
T ss_pred             hhhhhhcCCCcHHHHHHHHHHHHhcchH--------------HHHHHHHhcccccccCccccchhhhheeecCcceEeee
Confidence            3333344477777777888888888765              55544432 2333333      222  24557766666


Q ss_pred             hhchhhHHHHHhcHHHHHHHHHHHHc---------cCC---------CChhHHHHHHHHHHHhhccchHHHHHHHHHhcC
Q psy9159         126 NGQFQSLKEKIKCGVVFRDQMNKAIQ---------MAP---------KDFTLYSLKGRYQYEISKLSFFERKIAVLIVSD  187 (259)
Q Consensus       126 ~~~~~~~~~~~~~~~~a~~~~~kAl~---------l~P---------~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~  187 (259)
                      ++.+.-          +...|.+||+         +.|         ..-...|+.|..+...                 
T Consensus       296 ~~~y~~----------~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~-----------------  348 (696)
T KOG2471|consen  296 LGCYQA----------SSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHS-----------------  348 (696)
T ss_pred             hhhHHH----------HHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhc-----------------
Confidence            666642          2345555553         122         2345677777776653                 


Q ss_pred             CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCC
Q psy9159         188 LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGE  227 (259)
Q Consensus       188 ~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~  227 (259)
                         |+.-.|.+||.+++...- .++..|+.||.|.+...+
T Consensus       349 ---grPl~AfqCf~~av~vfh-~nPrlWLRlAEcCima~~  384 (696)
T KOG2471|consen  349 ---GRPLLAFQCFQKAVHVFH-RNPRLWLRLAECCIMALQ  384 (696)
T ss_pred             ---CCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhh
Confidence               889999999999999987 678999999999876543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.36  E-value=0.5  Score=36.75  Aligned_cols=95  Identities=17%  Similarity=0.121  Sum_probs=78.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      ++..++..++..+--.-|+.+++-..-|..+...|++.              +|+..++...+..|..+.+-..++.|+.
T Consensus        24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~--------------dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWD--------------DALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHH--------------HHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            78999999999998899999999999999999999875              9999999999999999999999999999


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHH
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGR  165 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~  165 (259)
                      ..++...           ..+-.++++-.| ++.+......
T Consensus        90 ~~~D~~W-----------r~~A~evle~~~-d~~a~~Lv~~  118 (160)
T PF09613_consen   90 ALGDPSW-----------RRYADEVLESGA-DPDARALVRA  118 (160)
T ss_pred             HcCChHH-----------HHHHHHHHhcCC-ChHHHHHHHH
Confidence            9988753           345567777766 4444444443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.35  E-value=0.55  Score=38.54  Aligned_cols=85  Identities=12%  Similarity=-0.030  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC------ChhHHHHHHHHHHHhhccchHHHHHHHHHhc
Q psy9159         113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK------DFTLYSLKGRYQYEISKLSFFERKIAVLIVS  186 (259)
Q Consensus       113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~------~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~  186 (259)
                      +..+..+|+++...++.+.-...+   ..|.+.|++|++-...      .....+.+|.++.+.                
T Consensus       118 A~l~LrlAWlyR~~~~~~~E~~fl---~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrl----------------  178 (214)
T PF09986_consen  118 AGLCLRLAWLYRDLGDEENEKRFL---RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRL----------------  178 (214)
T ss_pred             HHHHHHHHHHhhccCCHHHHHHHH---HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHh----------------
Confidence            344567788888888754333222   3567888888875543      246788899888775                


Q ss_pred             CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHH
Q psy9159         187 DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAK  220 (259)
Q Consensus       187 ~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~  220 (259)
                          |++++|+.+|.+.+...-........++|.
T Consensus       179 ----g~~~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  179 ----GNYDEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             ----CCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence                889999999999999654222124455443

>KOG1586|consensus

Probab=95.33  E-value=0.67  Score=38.41  Aligned_cols=56  Identities=20%  Similarity=0.187  Sum_probs=39.9

Q ss_pred             CcHHHHHHHHHHHHhhCCCCc-----HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         191 PTAEDAIANCLKAEELAPAPW-----KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      .+++.||.+|+.|-+--..+-     ...++-.|..-..++++.+|+..|+++....-+|+
T Consensus       128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~  188 (288)
T KOG1586|consen  128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN  188 (288)
T ss_pred             HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            568888888888877532111     12356667777788999999999999977654443

>KOG1310|consensus

Probab=95.33  E-value=0.033  Score=50.86  Aligned_cols=91  Identities=11%  Similarity=-0.075  Sum_probs=71.0

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      +....|+..|.+++...|.....+.+.+.++...+=.           +..-.|+.-+..|+.++|-...+|++++.++.
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~-----------~d~~~AlrDch~Alrln~s~~kah~~la~aL~  456 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWR-----------GDSYLALRDCHVALRLNPSIQKAHFRLARALN  456 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc-----------ccHHHHHHhHHhhccCChHHHHHHHHHHHHHH
Confidence            5778899999999999999999999998888764311           12238899999999999999999999999999


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCC
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD  156 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~  156 (259)
                      .++.+..          ++++..-+...+|++
T Consensus       457 el~r~~e----------al~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  457 ELTRYLE----------ALSCHWALQMSFPTD  478 (758)
T ss_pred             HHhhHHH----------hhhhHHHHhhcCchh
Confidence            8887653          344444444556643

>KOG0985|consensus

Probab=95.32  E-value=0.9  Score=45.09  Aligned_cols=142  Identities=22%  Similarity=0.184  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      ++.++|.++.++.     +.|++|..+|.+..+.|...              +|++.|-||     ++|..+...-.+..
T Consensus      1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~--------------dAieSyika-----dDps~y~eVi~~a~ 1144 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK--------------DAIESYIKA-----DDPSNYLEVIDVAS 1144 (1666)
T ss_pred             hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH--------------HHHHHHHhc-----CCcHHHHHHHHHHH
Confidence            4555555555554     66899999999999888764              777777665     55555555556666


Q ss_pred             HhhchhhHHHHHhcHHH-H---------H---------HHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHh
Q psy9159         125 ANGQFQSLKEKIKCGVV-F---------R---------DQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIV  185 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~-a---------~---------~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~  185 (259)
                      +.|.++.....+..+++ .         +         ..++. +-..|+++..-.. |.-+++                
T Consensus      1145 ~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~-fi~gpN~A~i~~v-Gdrcf~---------------- 1206 (1666)
T KOG0985|consen 1145 RTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEE-FIAGPNVANIQQV-GDRCFE---------------- 1206 (1666)
T ss_pred             hcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHH-HhcCCCchhHHHH-hHHHhh----------------
Confidence            66666644322221110 0         0         00011 1123333333222 221222                


Q ss_pred             cCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         186 SDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       186 ~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                          .|.|+.|.-+|.         +..+|..||.++..+|+|+.|+..-+||-+.
T Consensus      1207 ----~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1207 ----EKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred             ----hhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence                144555444432         3456788999999999999999999988543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.96  E-value=0.83  Score=36.73  Aligned_cols=83  Identities=18%  Similarity=0.127  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHccCCCCh----hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc-HHhH
Q psy9159         141 VFRDQMNKAIQMAPKDF----TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW-KENQ  215 (259)
Q Consensus       141 ~a~~~~~kAl~l~P~~~----~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~-~~~~  215 (259)
                      +|...++.++.. |.+.    .+-..|+++..+.                    |++++|+..+.-..+  + .+ +...
T Consensus       107 ~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~--------------------~k~D~AL~~L~t~~~--~-~w~~~~~  162 (207)
T COG2976         107 KAEAQLKQALAQ-TKDENLKALAALRLARVQLQQ--------------------KKADAALKTLDTIKE--E-SWAAIVA  162 (207)
T ss_pred             HHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHhcccc--c-cHHHHHH
Confidence            445555555433 3332    3456677777764                    789999888765433  3 23 3345


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         216 LLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       216 ~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      -..|.++...|+.++|+..|.++++.++.++.
T Consensus       163 elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~  194 (207)
T COG2976         163 ELRGDILLAKGDKQEARAAYEKALESDASPAA  194 (207)
T ss_pred             HHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence            56899999999999999999999999855443

>KOG3617|consensus

Probab=94.95  E-value=0.82  Score=44.41  Aligned_cols=172  Identities=12%  Similarity=0.120  Sum_probs=94.7

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      +.++..+.+++  ...|+.+.|+..|..+        .-|+.+-++.+.+|+..              +|..     |+.
T Consensus       912 ~~L~~WWgqYl--ES~GemdaAl~~Y~~A--------~D~fs~VrI~C~qGk~~--------------kAa~-----iA~  962 (1416)
T KOG3617|consen  912 ESLYSWWGQYL--ESVGEMDAALSFYSSA--------KDYFSMVRIKCIQGKTD--------------KAAR-----IAE  962 (1416)
T ss_pred             hHHHHHHHHHH--hcccchHHHHHHHHHh--------hhhhhheeeEeeccCch--------------HHHH-----HHH
Confidence            44556666666  4448888888888776        33566667777777654              5543     344


Q ss_pred             CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh--hHHHHH------------HHHHHHhhccc
Q psy9159         109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF--TLYSLK------------GRYQYEISKLS  174 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~--~~~~~l------------G~~~~~~~~~~  174 (259)
                      +..|--+.+++|..+...|++..+......+    +.+..||++--.|.  +-+.++            ++.|-+.|-  
T Consensus       963 esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA----qafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~-- 1036 (1416)
T KOG3617|consen  963 ESGDKAACYHLARMYENDGDVVKAVKFFTRA----QAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG-- 1036 (1416)
T ss_pred             hcccHHHHHHHHHHhhhhHHHHHHHHHHHHH----HHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch--
Confidence            5677788889999998888877655444333    34444555433322  111111            122222110  


Q ss_pred             hHHHHHHHHHhcCCCCCcHHHHHHHHHH----------HHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159         175 FFERKIAVLIVSDLDEPTAEDAIANCLK----------AEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK  239 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~g~~~eAi~~~~k----------Ai~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal  239 (259)
                      .+.+++.  +|.  ..|.+.+|++.--+          |-+++|+..+.....-+..+....+|++|++.+-++.
T Consensus      1037 ~~~~AVm--LYH--kAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1037 YAHKAVM--LYH--KAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred             hhhHHHH--HHH--hhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            1111111  111  02334444433221          2346775556666667788888899999988765543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.88  E-value=0.29  Score=40.20  Aligned_cols=54  Identities=19%  Similarity=0.144  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHhhCCC-----CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         193 AEDAIANCLKAEELAPA-----PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       193 ~~eAi~~~~kAi~l~P~-----~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      +..|.+.|.+|++....     +.....+.+|.+...+|++++|+++|.+++.....+.
T Consensus       141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            68899999999987641     1134577799999999999999999999999876665

>KOG4507|consensus

Probab=94.87  E-value=0.13  Score=47.84  Aligned_cols=91  Identities=13%  Similarity=0.068  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHccCCCChh-HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHH
Q psy9159         141 VFRDQMNKAIQMAPKDFT-LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIA  219 (259)
Q Consensus       141 ~a~~~~~kAl~l~P~~~~-~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la  219 (259)
                      .|..++.+|+.+.|.... ....|+.+....                    |-..+|-..+.+++.++- .-+-.++.+|
T Consensus       625 ~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~--------------------~~~~da~~~l~q~l~~~~-sepl~~~~~g  683 (886)
T KOG4507|consen  625 FAIACLQRALNLAPLQQDVPLVNLANLLIHY--------------------GLHLDATKLLLQALAINS-SEPLTFLSLG  683 (886)
T ss_pred             HHHHHHHHHhccChhhhcccHHHHHHHHHHh--------------------hhhccHHHHHHHHHhhcc-cCchHHHhcc
Confidence            466788888888887553 456677666553                    447889999999999986 5566788899


Q ss_pred             HHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         220 KCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       220 ~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                      ..+..+.+.+.|++.++.|+.++|.+++-.+-+
T Consensus       684 ~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l  716 (886)
T KOG4507|consen  684 NAYLALKNISGALEAFRQALKLTTKCPECENSL  716 (886)
T ss_pred             hhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence            999999999999999999999999998755443

>KOG1310|consensus

Probab=94.81  E-value=0.14  Score=46.98  Aligned_cols=88  Identities=16%  Similarity=0.123  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHH
Q psy9159         141 VFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAK  220 (259)
Q Consensus       141 ~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~  220 (259)
                      .++.+|.++++--|.....+-+.+.++.+.+=                 .|+.-.|+.-...|++++| ....+|+.|+.
T Consensus       392 ~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW-----------------~~d~~~AlrDch~Alrln~-s~~kah~~la~  453 (758)
T KOG1310|consen  392 GAISHYSRAIQYVPDAIYLLENRAAALMKRKW-----------------RGDSYLALRDCHVALRLNP-SIQKAHFRLAR  453 (758)
T ss_pred             HHHHHHHHHhhhccchhHHHHhHHHHHHhhhc-----------------cccHHHHHHhHHhhccCCh-HHHHHHHHHHH
Confidence            35678899999999998888888877765421                 3777889999999999999 77889999999


Q ss_pred             HHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         221 CYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       221 ~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      ++..++++.+|++...-+....|.+.
T Consensus       454 aL~el~r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  454 ALNELTRYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             HHHHHhhHHHhhhhHHHHhhcCchhh
Confidence            99999999999999998888888544

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.75  E-value=0.11  Score=44.66  Aligned_cols=90  Identities=13%  Similarity=0.017  Sum_probs=63.1

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHhhchhh
Q psy9159          53 LTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKW-YGICVGANGQFQS  131 (259)
Q Consensus        53 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~-la~~~~~~~~~~~  131 (259)
                      .+.++....|+++.+|...+......|.              +.+--..|.+++++.|.|++.|.. -+.-+...+++. 
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~--------------y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~-  159 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKM--------------YGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIE-  159 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHH-
Confidence            4556666789999988766544333343              347778899999999999998743 122233334443 


Q ss_pred             HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHH
Q psy9159         132 LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY  166 (259)
Q Consensus       132 ~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~  166 (259)
                               .+...+.++|++||.+|..|+..-++
T Consensus       160 ---------s~Ra~f~~glR~N~~~p~iw~eyfr~  185 (435)
T COG5191         160 ---------SSRAMFLKGLRMNSRSPRIWIEYFRM  185 (435)
T ss_pred             ---------HHHHHHHhhhccCCCCchHHHHHHHH
Confidence                     45688999999999999999876654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.47  E-value=0.07  Score=43.90  Aligned_cols=60  Identities=15%  Similarity=0.124  Sum_probs=53.2

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQ  116 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~  116 (259)
                      .. ++.+.|.++|.+++..-|+...-|+++|......|..              +.|...+++.++++|++..+-
T Consensus         7 ~~-~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~--------------daAa~a~~~~L~ldp~D~~ga   66 (287)
T COG4976           7 ES-GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEF--------------DAAAAAYEEVLELDPEDHGGA   66 (287)
T ss_pred             cc-CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccH--------------HHHHHHHHHHHcCCcccccch
Confidence            45 9999999999999999999999999999887777765              499999999999999986553

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.34  E-value=0.1  Score=44.85  Aligned_cols=87  Identities=10%  Similarity=0.050  Sum_probs=64.7

Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHH
Q psy9159         101 YAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKI  180 (259)
Q Consensus       101 ~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~  180 (259)
                      .+.++-..-|+++..|..++.-....+.+.          .....+..++..+|+|.+.|..-...-+..          
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~----------~~~nI~~~~l~khP~nvdlWI~~c~~e~~~----------  154 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYG----------EMKNIFAECLTKHPLNVDLWIYCCAFELFE----------  154 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhcCCCCceeeeeeccchhhh----------
Confidence            456677788999998877765554454443          345788999999999999998755433322          


Q ss_pred             HHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHH
Q psy9159         181 AVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLL  217 (259)
Q Consensus       181 ~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~  217 (259)
                               .++++.+...|.+++.++| .++..|..
T Consensus       155 ---------~ani~s~Ra~f~~glR~N~-~~p~iw~e  181 (435)
T COG5191         155 ---------IANIESSRAMFLKGLRMNS-RSPRIWIE  181 (435)
T ss_pred             ---------hccHHHHHHHHHhhhccCC-CCchHHHH
Confidence                     2789999999999999999 67776543

>PRK10941 hypothetical protein; Provisional

Probab=94.30  E-value=0.41  Score=40.73  Aligned_cols=60  Identities=13%  Similarity=0.067  Sum_probs=55.8

Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHH
Q psy9159          44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQK  117 (259)
Q Consensus        44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~  117 (259)
                      .+++++|+...+.++..+|++|.-+.-.|.+|.++|...              .|+.-++..++..|+++.+..
T Consensus       194 ~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~--------------~A~~DL~~fl~~~P~dp~a~~  253 (269)
T PRK10941        194 EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEH--------------VALSDLSYFVEQCPEDPISEM  253 (269)
T ss_pred             cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH--------------HHHHHHHHHHHhCCCchhHHH
Confidence            399999999999999999999999999999999999875              999999999999999998753

>KOG3617|consensus

Probab=94.27  E-value=1.6  Score=42.61  Aligned_cols=32  Identities=28%  Similarity=0.406  Sum_probs=26.6

Q ss_pred             CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         210 PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       210 ~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                      .+..+.+.||.-|...|++.+|+..|.+|-..
T Consensus       965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  965 GDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            34567889999999999999999998887543

>KOG2471|consensus

Probab=94.17  E-value=0.3  Score=44.55  Aligned_cols=121  Identities=17%  Similarity=0.125  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC--------ChhHHHHHH
Q psy9159          93 KYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK--------DFTLYSLKG  164 (259)
Q Consensus        93 ~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~--------~~~~~~~lG  164 (259)
                      ..+..+..-.+.++.+.-+.+.+....+......|++..+.+.+         ..--|...|.        ...+|.++|
T Consensus       220 ~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL---------~~sni~~~~g~~~T~q~~~cif~NNlG  290 (696)
T KOG2471|consen  220 RNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLL---------LVSNIHKEAGGTITPQLSSCIFNNNLG  290 (696)
T ss_pred             HHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHH---------HhcccccccCccccchhhhheeecCcc
Confidence            34556666677788888889998888888888788876432211         1111233333        335688999


Q ss_pred             HHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHh---------hCC--------CCcHHhHHHHHHHHHHhCC
Q psy9159         165 RYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEE---------LAP--------APWKENQLLIAKCYIEAGE  227 (259)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~---------l~P--------~~~~~~~~~la~~~~~~g~  227 (259)
                      -+++++                    |.|.-++.+|.+|++         +.|        +......++.|..|...|+
T Consensus       291 cIh~~~--------------------~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~gr  350 (696)
T KOG2471|consen  291 CIHYQL--------------------GCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGR  350 (696)
T ss_pred             eEeeeh--------------------hhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCC
Confidence            998886                    668889999999985         112        1224568899999999999


Q ss_pred             HHHHHHHHHHHhcCC
Q psy9159         228 YAKAVQWLDKAKAIP  242 (259)
Q Consensus       228 ~~eA~~~~~kal~l~  242 (259)
                      .-.|.++|.+++..-
T Consensus       351 Pl~AfqCf~~av~vf  365 (696)
T KOG2471|consen  351 PLLAFQCFQKAVHVF  365 (696)
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999999997654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.16  E-value=4.4  Score=36.90  Aligned_cols=47  Identities=19%  Similarity=0.284  Sum_probs=43.0

Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA  238 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~ka  238 (259)
                      +|+|.++.-+-.=..+++|  .+.++.-+|.|++..++|+||.+++.+.
T Consensus       475 qgey~kc~~ys~WL~~iaP--S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  475 QGEYHKCYLYSSWLTKIAP--SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             cccHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            4999999999999999999  4899999999999999999999998753

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1839|consensus

Probab=94.15  E-value=0.22  Score=50.18  Aligned_cols=171  Identities=11%  Similarity=0.022  Sum_probs=97.3

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHH------HHH-HHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHH
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYN------LTM-ELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYA  102 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~------~~~-~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~  102 (259)
                      +..+.+....  .. |.+++|.+      ++. ....+.|+.+..+..+++.+..+|+..       +....-.+|.-..
T Consensus       934 ~~~e~gq~~~--~e-~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~-------~Ai~~~~ka~ii~ 1003 (1236)
T KOG1839|consen  934 DSPEQGQEAL--LE-DGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQ-------EAIAQQRKACIIS 1003 (1236)
T ss_pred             hhhhhhhhhh--cc-cchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchH-------HHHHhcccceeee
Confidence            4456665665  45 78887777      565 345578999999999999999988765       3333344455555


Q ss_pred             HHHHHhCCC-ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHH-----HccCCCCh---hHHHHHHHHHHHhhcc
Q psy9159         103 KKAMELAPN-NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKA-----IQMAPKDF---TLYSLKGRYQYEISKL  173 (259)
Q Consensus       103 ~kal~~~P~-~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kA-----l~l~P~~~---~~~~~lG~~~~~~~~~  173 (259)
                      ++.+.+++. ....+-+++.......+..++          ...+.++     +.-.|++|   ..-.+++.++..+   
T Consensus      1004 eR~~g~ds~~t~~~y~nlal~~f~~~~~~~a----------l~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v--- 1070 (1236)
T KOG1839|consen 1004 ERVLGKDSPNTKLAYGNLALYEFAVKNLSGA----------LKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGV--- 1070 (1236)
T ss_pred             chhccCCCHHHHHHhhHHHHHHHhccCccch----------hhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhH---
Confidence            555566532 233333333333333333322          2223333     23344444   4456666665544   


Q ss_pred             chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC-----C--cHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA-----P--WKENQLLIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~-----~--~~~~~~~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                                       ++++.|+++.+.|.+.+-+     .  +...+..++..+...|++..|++..+....
T Consensus      1071 -----------------~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1071 -----------------EEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence                             5689999999999886521     1  122345556666666666665555554443

>KOG1585|consensus

Probab=93.61  E-value=3.8  Score=34.33  Aligned_cols=124  Identities=12%  Similarity=-0.031  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh---hHHHHHHHHHHHhh
Q psy9159          95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF---TLYSLKGRYQYEIS  171 (259)
Q Consensus        95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~---~~~~~lG~~~~~~~  171 (259)
                      +++|...+.+|++-..+|.. +++-+..+...+...   +.+....++...++||..+--.+.   .+-..|+..     
T Consensus        47 feKakdcLlkA~~~yEnnrs-lfhAAKayEqaamLa---ke~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKA-----  117 (308)
T KOG1585|consen   47 FEKAKDCLLKASKGYENNRS-LFHAAKAYEQAAMLA---KELSKLSEVVDLYEKASELYVECGSPDTAAMALEKA-----  117 (308)
T ss_pred             HHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHH-----
Confidence            35888888888866655543 344444444333222   122233345567777765421111   111222221     


Q ss_pred             ccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc-----HHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         172 KLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW-----KENQLLIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                               +.++.    ..+.++|+..|++++.+--++.     .+-+...+.+|+.+.++++|-..+.|-..
T Consensus       118 ---------ak~le----nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~  178 (308)
T KOG1585|consen  118 ---------AKALE----NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGV  178 (308)
T ss_pred             ---------HHHhh----cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhh
Confidence                     11221    1568999999999998743111     23366678999999999999888777543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.40  E-value=0.16  Score=35.81  Aligned_cols=58  Identities=17%  Similarity=0.105  Sum_probs=46.1

Q ss_pred             CcHHHHHHHHHHHHhhCCCCc--------HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         191 PTAEDAIANCLKAEELAPAPW--------KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~--------~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                      |+|.+|++.+.+..+......        ..+.+++|.++...|++++|+..+++|+++--...|.
T Consensus        12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~   77 (94)
T PF12862_consen   12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR   77 (94)
T ss_pred             CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence            889999888888887643111        3457889999999999999999999999987665544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.35  E-value=1.9  Score=33.56  Aligned_cols=81  Identities=17%  Similarity=0.148  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHH
Q psy9159         141 VFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAK  220 (259)
Q Consensus       141 ~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~  220 (259)
                      ++...+.-.--+-|..+..-..-|.++...                    |++.+|+..++...+-.| ..+.+.-.++.
T Consensus        28 D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r--------------------~~w~dA~rlLr~l~~~~~-~~p~~kALlA~   86 (160)
T PF09613_consen   28 DAEALLDALRVLRPEFPELDLFDGWLHIVR--------------------GDWDDALRLLRELEERAP-GFPYAKALLAL   86 (160)
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHhccCC-CChHHHHHHHH
Confidence            344566666679999999999999988774                    889999999999988888 77888888999


Q ss_pred             HHHHhCCHHHHHHHHHHHhcCCC
Q psy9159         221 CYIEAGEYAKAVQWLDKAKAIPV  243 (259)
Q Consensus       221 ~~~~~g~~~eA~~~~~kal~l~p  243 (259)
                      |+..+|+.+- ..+-+.+++..+
T Consensus        87 CL~~~~D~~W-r~~A~evle~~~  108 (160)
T PF09613_consen   87 CLYALGDPSW-RRYADEVLESGA  108 (160)
T ss_pred             HHHHcCChHH-HHHHHHHHhcCC
Confidence            9999998543 222344444443

>KOG1914|consensus

Probab=93.31  E-value=6.9  Score=36.43  Aligned_cols=182  Identities=9%  Similarity=-0.017  Sum_probs=95.7

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhH
Q psy9159          53 LTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSL  132 (259)
Q Consensus        53 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~  132 (259)
                      .+++++.--+-.|++|+-.+.-....++.....++........+++...++++++---.....      ++..+.++++.
T Consensus       267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~------Ly~~~a~~eE~  340 (656)
T KOG1914|consen  267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL------LYFALADYEES  340 (656)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhHHH
Confidence            577777778889999988777666666533222333344555678888888888665433221      12222222211


Q ss_pred             HHHHhcHHHHHHHHHHHHc---cCCCChhHHHHH----------HHHHHHhhccc---hHHHHHHHHHhcCCCCCcHHHH
Q psy9159         133 KEKIKCGVVFRDQMNKAIQ---MAPKDFTLYSLK----------GRYQYEISKLS---FFERKIAVLIVSDLDEPTAEDA  196 (259)
Q Consensus       133 ~~~~~~~~~a~~~~~kAl~---l~P~~~~~~~~l----------G~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~eA  196 (259)
                      .-.-...+....++++++.   .+|+-.-+.++-          ++.-+....-.   -..=.++.++....-+++.+-|
T Consensus       341 ~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~A  420 (656)
T KOG1914|consen  341 RYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETA  420 (656)
T ss_pred             hcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHH
Confidence            1110011122344444443   344433322211          01111100000   0000000111111115888888


Q ss_pred             HHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         197 IANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       197 i~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                      .+.|+-.+.--| +.+..-......+..+++-..|...|++++..
T Consensus       421 frIFeLGLkkf~-d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  421 FRIFELGLKKFG-DSPEYVLKYLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             HHHHHHHHHhcC-CChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            999998888888 55555555667788888888888888888876

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=93.10  E-value=0.23  Score=28.35  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=25.2

Q ss_pred             HhHHHHHHHHHHhCCHHHHHHH--HHHHhcCCCCC
Q psy9159         213 ENQLLIAKCYIEAGEYAKAVQW--LDKAKAIPVVS  245 (259)
Q Consensus       213 ~~~~~la~~~~~~g~~~eA~~~--~~kal~l~p~~  245 (259)
                      +.+..+|..+...|++++|++.  |+-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4567789999999999999999  55887777654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1258|consensus

Probab=93.06  E-value=7.8  Score=36.32  Aligned_cols=158  Identities=11%  Similarity=0.009  Sum_probs=92.2

Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHH
Q psy9159          44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL-APNNSNTQKWYGIC  122 (259)
Q Consensus        44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~-~P~~~~~~~~la~~  122 (259)
                      .|+++...-++++++---....++|++.++-....|+..              -|.....++.++ .|.-+..+...+..
T Consensus       310 ~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~--------------~~~~~~~~~~~i~~k~~~~i~L~~a~f  375 (577)
T KOG1258|consen  310 LGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVS--------------LANNVLARACKIHVKKTPIIHLLEARF  375 (577)
T ss_pred             cccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchh--------------HHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence            499999999999999988899999999998887776643              333333333333 35566666666665


Q ss_pred             HHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHH---HHHHHHHhcC------------
Q psy9159         123 VGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFE---RKIAVLIVSD------------  187 (259)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~---~~~~~~~~~~------------  187 (259)
                      ....|++.          .|..++++..+--|+...+-.....|....+.+.-..   .......-+.            
T Consensus       376 ~e~~~n~~----------~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~  445 (577)
T KOG1258|consen  376 EESNGNFD----------DAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVK  445 (577)
T ss_pred             HHhhccHH----------HHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHH
Confidence            55555555          3345555555444665555444444444433221000   0000000000            


Q ss_pred             ------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhC
Q psy9159         188 ------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAG  226 (259)
Q Consensus       188 ------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g  226 (259)
                            .=.++-++|...+.++++..| ++...+..+-......+
T Consensus       446 ~~r~~~~i~~d~~~a~~~l~~~~~~~~-~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  446 FARLRYKIREDADLARIILLEANDILP-DCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhhhcCC-ccHHHHHHHHHHHHhCC
Confidence                  004777888888888888888 66666655555444443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.93  E-value=0.16  Score=26.49  Aligned_cols=24  Identities=21%  Similarity=0.383  Sum_probs=21.4

Q ss_pred             HhHHHHHHHHHHhCCHHHHHHHHH
Q psy9159         213 ENQLLIAKCYIEAGEYAKAVQWLD  236 (259)
Q Consensus       213 ~~~~~la~~~~~~g~~~eA~~~~~  236 (259)
                      .+.+.+|.++...|+.++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            457889999999999999999876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=92.73  E-value=5.6  Score=35.67  Aligned_cols=63  Identities=16%  Similarity=0.226  Sum_probs=46.9

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP--DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA  109 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~  109 (259)
                      ..++-.+|  .. ++|..|.+.+..+...-|.+.  +.+..+..+|.....+.            +.+|.+.+++.+...
T Consensus       135 ~~~a~~l~--n~-~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd------------~~~A~~~l~~~~~~~  199 (379)
T PF09670_consen  135 WRRAKELF--NR-YDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFD------------HKEALEYLEKLLKRD  199 (379)
T ss_pred             HHHHHHHH--hc-CCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHHh
Confidence            45566777  56 999999999999988634433  46777778887776654            568999888887663

>KOG4279|consensus

Probab=92.51  E-value=0.96  Score=43.41  Aligned_cols=74  Identities=23%  Similarity=0.358  Sum_probs=55.9

Q ss_pred             CCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHhh---chhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNN-KQPNDPDVLYRLAKACHCLY---DIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYG  120 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~g---~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la  120 (259)
                      |+-.+|++..-.+++ ..|-.|+.+..-|++|-.+=   ++        +..+..+.|+++|++|.+..|....+. +++
T Consensus       257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~y--------tDa~s~~~a~~WyrkaFeveP~~~sGI-N~a  327 (1226)
T KOG4279|consen  257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNY--------TDAESLNHAIEWYRKAFEVEPLEYSGI-NLA  327 (1226)
T ss_pred             ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCC--------cchhhHHHHHHHHHHHhccCchhhccc-cHH
Confidence            899999987666654 57888999999999997652   33        233456799999999999999877664 566


Q ss_pred             HHHHHhh
Q psy9159         121 ICVGANG  127 (259)
Q Consensus       121 ~~~~~~~  127 (259)
                      .++...|
T Consensus       328 tLL~aaG  334 (1226)
T KOG4279|consen  328 TLLRAAG  334 (1226)
T ss_pred             HHHHHhh
Confidence            6665555

>KOG1914|consensus

Probab=92.45  E-value=4.2  Score=37.79  Aligned_cols=63  Identities=21%  Similarity=0.174  Sum_probs=49.1

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhH
Q psy9159          55 MELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSL  132 (259)
Q Consensus        55 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~  132 (259)
                      ++-|+.+|.|.+.|+.|-+-+... -              +++.++.|++-+..-|..+.+|..+........+|+..
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~--------------~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~V   72 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-P--------------IDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESV   72 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-C--------------HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHH
Confidence            678899999999998887766544 2              35888999999999999999887776666666666544

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=92.40  E-value=9.7  Score=38.22  Aligned_cols=109  Identities=9%  Similarity=0.034  Sum_probs=77.4

Q ss_pred             cCCHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy9159          44 KDDKAKAYNLTMELNNKQP---NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYG  120 (259)
Q Consensus        44 ~~~~~~A~~~~~~~~~~~p---~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la  120 (259)
                      +..|+.|+..|+++-...|   +.-++.+++|.+......-.   ++    ...+++|+.-|++.- --|.-|.-+...|
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  559 (932)
T PRK13184        488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQ---GD----PRDFTQALSEFSYLH-GGVGAPLEYLGKA  559 (932)
T ss_pred             hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhc---CC----hHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence            3899999999999999887   45788899999988655432   12    145778888887653 3455666666677


Q ss_pred             HHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159         121 ICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI  170 (259)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~  170 (259)
                      .++.+++++++          -.+++.-|++--|++|..-...-.+.+++
T Consensus       560 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  599 (932)
T PRK13184        560 LVYQRLGEYNE----------EIKSLLLALKRYSQHPEISRLRDHLVYRL  599 (932)
T ss_pred             HHHHHhhhHHH----------HHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence            78888888763          35778888888888887655544444333

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=92.29  E-value=0.26  Score=29.51  Aligned_cols=26  Identities=31%  Similarity=0.515  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         215 QLLIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       215 ~~~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                      .++||.+|+.+|+.+.|.+.++.+++
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHH
Confidence            47899999999999999999999995

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.17  E-value=0.75  Score=37.18  Aligned_cols=57  Identities=23%  Similarity=0.177  Sum_probs=47.1

Q ss_pred             CChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCC---cHHhHHHHHHHHHHhCCHHHH
Q psy9159         155 KDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAP---WKENQLLIAKCYIEAGEYAKA  231 (259)
Q Consensus       155 ~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~---~~~~~~~la~~~~~~g~~~eA  231 (259)
                      +++...+.||.+|.+                     .+-++|+..+.+++++.+.+   ++++...|+.++..+|+++.|
T Consensus       139 ~t~elq~aLAtyY~k---------------------rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  139 ETAELQYALATYYTK---------------------RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             CCHHHHHHHHHHHHc---------------------cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            467888888887754                     56899999999999986423   578899999999999999987


Q ss_pred             H
Q psy9159         232 V  232 (259)
Q Consensus       232 ~  232 (259)
                      =
T Consensus       198 Y  198 (203)
T PF11207_consen  198 Y  198 (203)
T ss_pred             h
Confidence            4

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=92.06  E-value=2.1  Score=29.12  Aligned_cols=50  Identities=10%  Similarity=-0.017  Sum_probs=40.0

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH---HHHhhchh
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKA---CHCLYDIK   82 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~---~~~~g~~~   82 (259)
                      ..++++-.++  .+ .+.++|+..++++++..++.++-+..+|.+   |..+|.+.
T Consensus         8 ~~ie~GlkLY--~~-~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr   60 (80)
T PF10579_consen    8 QQIEKGLKLY--HQ-NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYR   60 (80)
T ss_pred             HHHHHHHHHh--cc-chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888888  77 899999999999999999998877776654   45666653

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=92.02  E-value=0.7  Score=38.96  Aligned_cols=62  Identities=15%  Similarity=0.144  Sum_probs=49.8

Q ss_pred             HHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHH
Q psy9159         142 FRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC  221 (259)
Q Consensus       142 a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~  221 (259)
                      |..+|.+|+.+.|++...|+.||.++...                    |+.=+|+-+|-|++-..- ..+.+.-+|...
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~--------------------~~~l~avy~y~Rsl~~~~-Pf~~A~~NL~~l   59 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQ--------------------GDDLDAVYYYIRSLAVRI-PFPSARENLQKL   59 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHT--------------------T-HHHHHHHHHHHHSSSB---HHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccc--------------------cchHHHHHHHHHHHhcCC-CcHHHHHHHHHH
Confidence            45789999999999999999999988663                    778899999999997653 347788888888


Q ss_pred             HHH
Q psy9159         222 YIE  224 (259)
Q Consensus       222 ~~~  224 (259)
                      +.+
T Consensus        60 f~~   62 (278)
T PF10373_consen   60 FEK   62 (278)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.89  E-value=3  Score=32.07  Aligned_cols=72  Identities=13%  Similarity=0.092  Sum_probs=65.3

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      ++..++..++..+--.-|+.+++-.--|..+...|++.              +|+..++...+-.|..+-+.-.++.|+.
T Consensus        24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~--------------eA~rvlr~l~~~~~~~p~~kAL~A~CL~   89 (153)
T TIGR02561        24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYD--------------EAARILRELLSSAGAPPYGKALLALCLN   89 (153)
T ss_pred             CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHH--------------HHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence            78888888888888889999999999999999999875              9999999999999998988889999999


Q ss_pred             Hhhchh
Q psy9159         125 ANGQFQ  130 (259)
Q Consensus       125 ~~~~~~  130 (259)
                      .+++..
T Consensus        90 al~Dp~   95 (153)
T TIGR02561        90 AKGDAE   95 (153)
T ss_pred             hcCChH
Confidence            998875

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.83  E-value=0.41  Score=27.40  Aligned_cols=30  Identities=23%  Similarity=0.335  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      ..++.++|.+|...|++.              +|+.++++++++
T Consensus         2 a~~~~~la~~~~~~g~~~--------------~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYE--------------EALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HH--------------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcc--------------hhhHHHHHHHHH
Confidence            356789999999999876              666666666654

>KOG3364|consensus

Probab=91.83  E-value=4.5  Score=30.66  Aligned_cols=82  Identities=12%  Similarity=0.133  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHhhchhhHHHHHhcHHHH
Q psy9159          65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME-LAPN-NSNTQKWYGICVGANGQFQSLKEKIKCGVVF  142 (259)
Q Consensus        65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~-~~P~-~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a  142 (259)
                      .+..+++|+++....+.           ....+++..++..++ -.|+ .-+..+.++..+.++++|.          .+
T Consensus        32 ~~s~f~lAwaLV~S~~~-----------~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~----------~s   90 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDT-----------EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYS----------KS   90 (149)
T ss_pred             HHHHHHHHHHHHcccch-----------HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHH----------HH
Confidence            45556667666543322           234578888888775 4443 2345566777777777776          45


Q ss_pred             HHHHHHHHccCCCChhHHHHHHHHH
Q psy9159         143 RDQMNKAIQMAPKDFTLYSLKGRYQ  167 (259)
Q Consensus       143 ~~~~~kAl~l~P~~~~~~~~lG~~~  167 (259)
                      +.+.+..|+.+|+|..+....-.+.
T Consensus        91 ~~yvd~ll~~e~~n~Qa~~Lk~~ie  115 (149)
T KOG3364|consen   91 LRYVDALLETEPNNRQALELKETIE  115 (149)
T ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHH
Confidence            6777777888888877766555443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=91.55  E-value=4.4  Score=30.04  Aligned_cols=48  Identities=17%  Similarity=0.162  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHhhCCC---CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         194 EDAIANCLKAEELAPA---PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       194 ~eAi~~~~kAi~l~P~---~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                      +.|+.+|.+-=+++.+   .|+.+-++.|.++..+|+.++|++.|+++-++
T Consensus        79 ~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   79 DRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            3444455555556641   24666788999999999999999999999764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.38  E-value=0.31  Score=28.21  Aligned_cols=30  Identities=20%  Similarity=0.281  Sum_probs=26.9

Q ss_pred             HhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         213 ENQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       213 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                      .++..||.+-...++|++|++.|++++++-
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.86  E-value=0.64  Score=39.19  Aligned_cols=46  Identities=22%  Similarity=0.073  Sum_probs=40.5

Q ss_pred             HHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         196 AIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       196 Ai~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                      |+.+|.+|+.+.| ++...|..||.+....|+.=.|+=+|-|++...
T Consensus         1 A~~~Y~~A~~l~P-~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~   46 (278)
T PF10373_consen    1 AERYYRKAIRLLP-SNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR   46 (278)
T ss_dssp             HHHHHHHHHHH-T-TBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS
T ss_pred             CHHHHHHHHHhCC-CCCCcccchhhhhccccchHHHHHHHHHHHhcC
Confidence            6889999999999 889999999999999999999999999998654

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=90.71  E-value=1.5  Score=33.54  Aligned_cols=51  Identities=18%  Similarity=0.039  Sum_probs=41.6

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchh
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIK   82 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~   82 (259)
                      +.++..+...+  .. |+++-|..+...++..+|+|.++....+.++.++|...
T Consensus        71 d~vl~~A~~~~--~~-gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   71 DKVLERAQAAL--AA-GDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             HHHHHHHHHHH--HC-T-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHH--HC-CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence            45677788877  67 99999999999999999999999999999999998643

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.70  E-value=2  Score=32.97  Aligned_cols=67  Identities=13%  Similarity=0.058  Sum_probs=55.7

Q ss_pred             HHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHH
Q psy9159         142 FRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC  221 (259)
Q Consensus       142 a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~  221 (259)
                      +...+...--+-|+.+..-..-|.++...                    |++.||+..+....+-.| ..+...-.++.|
T Consensus        29 ~e~lLdALrvLrP~~~e~d~~dg~l~i~r--------------------g~w~eA~rvlr~l~~~~~-~~p~~kAL~A~C   87 (153)
T TIGR02561        29 AQAMLDALRVLRPNLKELDMFDGWLLIAR--------------------GNYDEAARILRELLSSAG-APPYGKALLALC   87 (153)
T ss_pred             HHHHHHHHHHhCCCccccchhHHHHHHHc--------------------CCHHHHHHHHHhhhccCC-CchHHHHHHHHH
Confidence            44555666668999999999999988764                    889999999999999888 667777788999


Q ss_pred             HHHhCCHH
Q psy9159         222 YIEAGEYA  229 (259)
Q Consensus       222 ~~~~g~~~  229 (259)
                      +..+|+.+
T Consensus        88 L~al~Dp~   95 (153)
T TIGR02561        88 LNAKGDAE   95 (153)
T ss_pred             HHhcCChH
Confidence            99999854

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.39  E-value=0.73  Score=26.65  Aligned_cols=30  Identities=33%  Similarity=0.399  Sum_probs=24.7

Q ss_pred             hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC
Q psy9159         158 TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA  207 (259)
Q Consensus       158 ~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~  207 (259)
                      .++..||.+....                    ++|+.|+.-|++++++-
T Consensus         2 dv~~~Lgeisle~--------------------e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLEN--------------------ENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHH
Confidence            4677888877764                    78999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=89.92  E-value=0.78  Score=24.48  Aligned_cols=29  Identities=17%  Similarity=0.239  Sum_probs=25.1

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAK   73 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~   73 (259)
                      |+.+.|...|++++...|.++++|...+.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            56789999999999999999999976554

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG4814|consensus

Probab=89.62  E-value=1.2  Score=41.95  Aligned_cols=60  Identities=13%  Similarity=0.019  Sum_probs=50.4

Q ss_pred             CcHHHHHHHHHHHHhhCCCCc-----HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchh
Q psy9159         191 PTAEDAIANCLKAEELAPAPW-----KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHD  250 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~  250 (259)
                      .+|..++++|.+.+.--|.+.     ......|+.||..+.+.+.|++.+..|-+.+|.++-.+-
T Consensus       368 ~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~  432 (872)
T KOG4814|consen  368 EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL  432 (872)
T ss_pred             HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence            679999999999999777443     334778999999999999999999999999998875443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.37  E-value=1.5  Score=37.51  Aligned_cols=48  Identities=15%  Similarity=0.175  Sum_probs=42.9

Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA  238 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~ka  238 (259)
                      .|.+.+|+...++++.++| -+...+..|-.+|..+|+--.|++.|++-
T Consensus       292 ~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         292 AGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             cCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            4899999999999999999 77888999999999999988888777664

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.20  E-value=1.6  Score=34.67  Aligned_cols=63  Identities=16%  Similarity=0.231  Sum_probs=32.9

Q ss_pred             hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC--CCCcHHhHHHHHHHHHHhCCHHHHHHHH
Q psy9159         158 TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA--PAPWKENQLLIAKCYIEAGEYAKAVQWL  235 (259)
Q Consensus       158 ~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~--P~~~~~~~~~la~~~~~~g~~~eA~~~~  235 (259)
                      .++..+|..|.+.|+                    .++|+++|.++.+-.  |.+....++.+-.+.+..+++.....+.
T Consensus        37 ~~~~~l~~~~~~~Gd--------------------~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i   96 (177)
T PF10602_consen   37 MALEDLADHYCKIGD--------------------LEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYI   96 (177)
T ss_pred             HHHHHHHHHHHHhhh--------------------HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            578889998888754                    455555555544432  1111233444444444445555555555


Q ss_pred             HHHhc
Q psy9159         236 DKAKA  240 (259)
Q Consensus       236 ~kal~  240 (259)
                      .|+-.
T Consensus        97 ~ka~~  101 (177)
T PF10602_consen   97 EKAES  101 (177)
T ss_pred             HHHHH
Confidence            55443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=89.12  E-value=2.7  Score=38.18  Aligned_cols=48  Identities=15%  Similarity=0.128  Sum_probs=42.6

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchh
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIK   82 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~   82 (259)
                      .+..|..+|  .. |+|.+++..-....+..| +|.++..+|.+.....++.
T Consensus       465 ~LaDAEyLy--sq-gey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~  512 (549)
T PF07079_consen  465 FLADAEYLY--SQ-GEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQ  512 (549)
T ss_pred             HHHHHHHHH--hc-ccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHH
Confidence            367888888  67 999999999999999999 9999999999998877765

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=88.71  E-value=9  Score=34.65  Aligned_cols=50  Identities=18%  Similarity=0.225  Sum_probs=41.7

Q ss_pred             CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                      ++.+-|+.+-.+.|-++| .+..+++..|.|+..+.+|.+|-+.+.-|.-+
T Consensus       242 rkpdlALnh~hrsI~lnP-~~frnHLrqAavfR~LeRy~eAarSamia~ym  291 (569)
T PF15015_consen  242 RKPDLALNHSHRSINLNP-SYFRNHLRQAAVFRRLERYSEAARSAMIADYM  291 (569)
T ss_pred             CCCchHHHHHhhhhhcCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667888999999999999 77888888999999999999988877766543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=88.32  E-value=15  Score=31.27  Aligned_cols=192  Identities=12%  Similarity=0.009  Sum_probs=97.2

Q ss_pred             hhHHHHHhhcCCcC-CHHHHHHHHHHHhhc-------CCCCH-------HHHHHHHHHHHHhhchhcccCcHHHHHHHHH
Q psy9159          32 YPEIDRLLYYGKKD-DKAKAYNLTMELNNK-------QPNDP-------DVLYRLAKACHCLYDIKRRENDKEASEKYIL   96 (259)
Q Consensus        32 ~~~~~~l~~~~~~~-~~~~A~~~~~~~~~~-------~p~~~-------~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~   96 (259)
                      +.-+..++  .. + ++++|...++++.+.       +...+       .++..++.+|...+...           ..+
T Consensus        39 yn~G~~l~--~~-~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~-----------~~~  104 (278)
T PF08631_consen   39 YNIGKSLL--SK-KDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYE-----------SVE  104 (278)
T ss_pred             HHHHHHHH--Hc-CCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChH-----------HHH
Confidence            34444555  45 7 899998888887665       22332       34445566666555432           345


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHh-----------cHHHHHHHHHHHHccCCCChhHHHHHHH
Q psy9159          97 QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIK-----------CGVVFRDQMNKAIQMAPKDFTLYSLKGR  165 (259)
Q Consensus        97 ~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~-----------~~~~a~~~~~kAl~l~P~~~~~~~~lG~  165 (259)
                      +|..+.+.+-.-.|+.+..+.+.=.++...++.....+-+.           ....+...+.+..+.+|..+........
T Consensus       105 ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l  184 (278)
T PF08631_consen  105 KALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLL  184 (278)
T ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHH
Confidence            77777777777789888877443333433333332211110           1112334444545555543221111111


Q ss_pred             HHHHhh-ccc-hHHHHHHHHHhcCCC------CCcHHHHHHHHHHHHhh--CCCCcHHh-------HHHHHHHHHHhCCH
Q psy9159         166 YQYEIS-KLS-FFERKIAVLIVSDLD------EPTAEDAIANCLKAEEL--APAPWKEN-------QLLIAKCYIEAGEY  228 (259)
Q Consensus       166 ~~~~~~-~~~-~~~~~~~~~~~~~~~------~g~~~eAi~~~~kAi~l--~P~~~~~~-------~~~la~~~~~~g~~  228 (259)
                      + .... .-. |.++.+...++....      .++.+.....+......  .| -....       .-+.|....+.++|
T Consensus       185 ~-~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~-ls~~~~~a~~~LLW~~~~~~~~~k~y  262 (278)
T PF08631_consen  185 L-NRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQ-LSAEAASAIHTLLWNKGKKHYKAKNY  262 (278)
T ss_pred             H-HHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHhhcCH
Confidence            0 0110 111 556555543332211      22355555555533332  12 22222       22357778899999


Q ss_pred             HHHHHHHHHHh
Q psy9159         229 AKAVQWLDKAK  239 (259)
Q Consensus       229 ~eA~~~~~kal  239 (259)
                      ++|++||+-++
T Consensus       263 ~~A~~w~~~al  273 (278)
T PF08631_consen  263 DEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHH
Confidence            99999999776

It is also involved in sporulation [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=87.76  E-value=2.1  Score=24.30  Aligned_cols=34  Identities=24%  Similarity=0.217  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHH--HHHHHHhCCCC
Q psy9159          65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY--AKKAMELAPNN  112 (259)
Q Consensus        65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~--~~kal~~~P~~  112 (259)
                      ++.++.+|..+...|++.              +|+..  ++-+..++|.|
T Consensus         1 ~e~~y~~a~~~y~~~ky~--------------~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGKYD--------------EAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT-HH--------------HHHHHHHHHHHHHHTTT-
T ss_pred             CcHHHHHHHHHHHHhhHH--------------HHHHHHHHHHHHHhcccC
Confidence            366788999999999875              99999  55888888865

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF12854 PPR_1: PPR repeat

Probab=87.70  E-value=1.6  Score=24.31  Aligned_cols=30  Identities=20%  Similarity=0.233  Sum_probs=25.7

Q ss_pred             hCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHH
Q psy9159         206 LAPAPWKENQLLIAKCYIEAGEYAKAVQWLDK  237 (259)
Q Consensus       206 l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~k  237 (259)
                      +.|  +...|..|-..|.+.|+.++|.+.+++
T Consensus         3 ~~P--d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    3 CEP--DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             CCC--cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            456  367789999999999999999999875

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=87.68  E-value=2  Score=34.37  Aligned_cols=53  Identities=19%  Similarity=0.135  Sum_probs=47.5

Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      .+..+..+++.++.+...| + +.++..++.++..+|+.++|..+.+++..+-|.
T Consensus       124 ~~~l~~~~~~a~~~l~~~P-~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~  176 (193)
T PF11846_consen  124 PEMLEAYIEWAERLLRRRP-D-PNVYQRYALALALLGDPEEARQWLARARRLYPA  176 (193)
T ss_pred             HHHHHHHHHHHHHHHHhCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            3556888889999999999 4 788999999999999999999999999999983

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []

Probab=87.48  E-value=1.8  Score=38.57  Aligned_cols=59  Identities=22%  Similarity=0.195  Sum_probs=44.1

Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          46 DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        46 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      -..+|+.+++++..  .++|+.|..+|.++..+||..+  .+..++.+.+.+|..++.+|=..
T Consensus       333 l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d--~eS~eQe~~Y~eAE~iL~kAN~a  391 (404)
T PF12753_consen  333 LIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYD--NESKEQEKAYKEAEKILKKANKA  391 (404)
T ss_dssp             HHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-S--SHHH-HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccc--cchHHHHHHHHHHHHHHHHHhhc
Confidence            45688888988876  5789999999999999999762  23345778899999999988543

In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.47  E-value=3.4  Score=35.35  Aligned_cols=51  Identities=20%  Similarity=0.202  Sum_probs=47.3

Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                      .|+++.+++.+++-+.++| .+-..|..+=.+|...|+...|+..|++.-.+
T Consensus       166 ~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         166 CGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             cccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4889999999999999999 77889999999999999999999999998764

>KOG2422|consensus

Probab=87.47  E-value=26  Score=33.05  Aligned_cols=165  Identities=13%  Similarity=0.071  Sum_probs=95.0

Q ss_pred             CCHHHHHHHHHHHhh------------cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh--CC
Q psy9159          45 DDKAKAYNLTMELNN------------KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL--AP  110 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~------------~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~--~P  110 (259)
                      ..|++|...|.-+..            ..|-+++.+..++.++...|+..       -..+.++.|+-.+++++.-  .|
T Consensus       252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e-------~aadLieR~Ly~~d~a~hp~F~~  324 (665)
T KOG2422|consen  252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDRE-------MAADLIERGLYVFDRALHPNFIP  324 (665)
T ss_pred             hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHHHHhcccccc
Confidence            567777666665544            34777888899999988888654       5566778888888888742  12


Q ss_pred             ------------CChHHHHHH---HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC-ChhHHHHHHHHH-HHhhcc
Q psy9159         111 ------------NNSNTQKWY---GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK-DFTLYSLKGRYQ-YEISKL  173 (259)
Q Consensus       111 ------------~~~~~~~~l---a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~-~~~~~~~lG~~~-~~~~~~  173 (259)
                                  .|-..+..+   -..+...|..          ..|.+..+-.++++|. ||.+-..+-.+| +...++
T Consensus       325 ~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~----------rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareY  394 (665)
T KOG2422|consen  325 FSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW----------RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREY  394 (665)
T ss_pred             ccccccCcccchhhHHHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhH
Confidence                        222211111   1111122222          2456677777999999 886554444433 332333


Q ss_pred             chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCC---HHHHHHHHHHHhcCCC
Q psy9159         174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGE---YAKAVQWLDKAKAIPV  243 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~---~~eA~~~~~kal~l~p  243 (259)
                      +|..+.              -++.+.. +-+.+-| ++. .-..||..|.....   .+.|...+.+|+.+.|
T Consensus       395 qwiI~~--------------~~~~e~~-n~l~~~P-N~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  395 QWIIEL--------------SNEPENM-NKLSQLP-NFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             HHHHHH--------------HHHHHhh-ccHhhcC-Cch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence            333321              1111111 2245567 432 23456666665555   5788999999999988

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=87.18  E-value=21  Score=31.75  Aligned_cols=116  Identities=12%  Similarity=0.100  Sum_probs=74.1

Q ss_pred             HHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc----c---CCC------------ChhHHHHHHH
Q psy9159         105 AMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ----M---APK------------DFTLYSLKGR  165 (259)
Q Consensus       105 al~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~----l---~P~------------~~~~~~~lG~  165 (259)
                      .|..+|-+.+++..++.++...|+...+.+.++.   |.-.+++++-    .   +++            |-..+..+-+
T Consensus        32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleR---ALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r  108 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLER---ALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFR  108 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH---HHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHH
Confidence            4577899999999999999999988765544443   3333443321    1   222            2222222222


Q ss_pred             HHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC-CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         166 YQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA-PWKENQLLIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~-~~~~~~~~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                      .-..++                 ..|.+..|.++.+-.+++||. |...+.+.+=..-.+.++++-=++.++....
T Consensus       109 ~i~~L~-----------------~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  109 YIQSLG-----------------RRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHHHHH-----------------hcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            111111                 149999999999999999996 3334566666666677888888888776544

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2300|consensus

Probab=86.54  E-value=27  Score=32.33  Aligned_cols=168  Identities=13%  Similarity=0.120  Sum_probs=100.3

Q ss_pred             CCHHHHHHHHHHHhh---cCCC-------CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC-Ch
Q psy9159          45 DDKAKAYNLTMELNN---KQPN-------DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN-NS  113 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~---~~p~-------~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~-~~  113 (259)
                      |++.+|+.....+.+   ..|.       .+.++..+|.-....+-              ++.|...|..|.++-.. +-
T Consensus       337 ~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~--------------~enAe~hf~~a~k~t~~~dl  402 (629)
T KOG2300|consen  337 GDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNC--------------YENAEFHFIEATKLTESIDL  402 (629)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcch--------------HHHHHHHHHHHHHhhhHHHH
Confidence            889988887666654   3444       45555555655555444              45888888887765432 22


Q ss_pred             HH--HHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc-cCCCCh---hHHHHHHHHHHHhhccchHHHHHHHHHhcC
Q psy9159         114 NT--QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ-MAPKDF---TLYSLKGRYQYEISKLSFFERKIAVLIVSD  187 (259)
Q Consensus       114 ~~--~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~-l~P~~~---~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~  187 (259)
                      .+  -.++|.+|-+.++.+              .+.++++ +.|.|.   ......|.+++-.|-+.             
T Consensus       403 ~a~~nlnlAi~YL~~~~~e--------------d~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfa-------------  455 (629)
T KOG2300|consen  403 QAFCNLNLAISYLRIGDAE--------------DLYKALDLIGPLNTNSLSSQRLEASILYVYGLFA-------------  455 (629)
T ss_pred             HHHHHHhHHHHHHHhccHH--------------HHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHH-------------
Confidence            22  345666666655443              2233333 556542   22222333332221110             


Q ss_pred             CCCCcHHHHHHHHHHHHhhCCC-Cc----HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhh
Q psy9159         188 LDEPTAEDAIANCLKAEELAPA-PW----KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLST  253 (259)
Q Consensus       188 ~~~g~~~eAi~~~~kAi~l~P~-~~----~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~  253 (259)
                      ..++++.||.....+.++..-. +.    .-...-||.+..-.|+..++.+..+-+.++....+|-...+.
T Consensus       456 f~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLw  526 (629)
T KOG2300|consen  456 FKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLW  526 (629)
T ss_pred             HHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHH
Confidence            0148899999999999997520 11    112455788888899999999999999998887777655443

>KOG4014|consensus

Probab=86.15  E-value=16  Score=29.37  Aligned_cols=169  Identities=14%  Similarity=0.072  Sum_probs=101.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      .+|++|...|+.--..+ ..+..-+.+|.-+. .|..        -..+....|.+.++.+-+  -+.+.+..++|.++.
T Consensus        49 knF~~A~kv~K~nCden-~y~kSCyKyG~y~~-~GKg--------G~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~  116 (248)
T KOG4014|consen   49 KNFQAAVKVFKKNCDEN-SYPKSCYKYGMYML-AGKG--------GDDASLSKAIRPMKIACD--ANIPQACRYLGLLHW  116 (248)
T ss_pred             HHHHHHHHHHHhccccc-CCcHHHHHhhhhhh-cccC--------CCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhc
Confidence            45666666665543322 22333344553333 2211        112345688888888876  567888888888776


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC-------------CC
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD-------------EP  191 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~-------------~g  191 (259)
                      .-.....+.   -+..++.+++.+|  .+-++.++.+.|..|+..-..     +.    .-+.|+             ..
T Consensus       117 ~g~~~r~~d---pd~~Ka~~y~tra--Cdl~~~~aCf~LS~m~~~g~~-----k~----~t~ap~~g~p~~~~~~~~~~k  182 (248)
T KOG4014|consen  117 NGEKDRKAD---PDSEKAERYMTRA--CDLEDGEACFLLSTMYMGGKE-----KF----KTNAPGEGKPLDRAELGSLSK  182 (248)
T ss_pred             cCcCCccCC---CCcHHHHHHHHHh--ccCCCchHHHHHHHHHhccch-----hh----cccCCCCCCCcchhhhhhhhH
Confidence            432221110   1133677888888  455678888888888754211     00    001111             36


Q ss_pred             cHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHh----CCHHHHHHHHHHHhcCC
Q psy9159         192 TAEDAIANCLKAEELAPAPWKENQLLIAKCYIEA----GEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       192 ~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~----g~~~eA~~~~~kal~l~  242 (259)
                      +.+.|.++-.+|.+++-   +.+.-++...|..-    ++-++|..+-++|.++.
T Consensus       183 DMdka~qfa~kACel~~---~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~  234 (248)
T KOG4014|consen  183 DMDKALQFAIKACELDI---PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM  234 (248)
T ss_pred             hHHHHHHHHHHHHhcCC---hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence            78999999999999963   56667777776443    45788999888888765

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=85.60  E-value=1.9  Score=22.84  Aligned_cols=27  Identities=19%  Similarity=0.158  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159          95 ILQGIEYAKKAMELAPNNSNTQKWYGI  121 (259)
Q Consensus        95 ~~~A~~~~~kal~~~P~~~~~~~~la~  121 (259)
                      .+.+...|++++...|.++..|..+..
T Consensus         3 ~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        3 IERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            468999999999999999998876654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=85.60  E-value=2.8  Score=29.31  Aligned_cols=55  Identities=16%  Similarity=0.179  Sum_probs=39.5

Q ss_pred             CcCCHHHHHHHHHHHhhcCCCC---------HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          43 KKDDKAKAYNLTMELNNKQPND---------PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        43 ~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      . |+|.+|++.+.+........         ..++.++|.++...|+..              +|+..+++|+.+...+
T Consensus        11 ~-~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~--------------~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen   11 S-GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYE--------------EALQALEEAIRLAREN   74 (94)
T ss_pred             c-CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHH--------------HHHHHHHHHHHHHHHH
Confidence            5 89999988877776532211         355677888888888765              8888888888776543

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=85.57  E-value=19  Score=30.77  Aligned_cols=170  Identities=11%  Similarity=0.058  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q psy9159          47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGAN  126 (259)
Q Consensus        47 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~  126 (259)
                      -..|++.....+..+|..-.+|.-.=.+.....      +..+++...++.-++++..+++-+|.+..+|.+--.++...
T Consensus        48 s~~aLklt~elid~npe~ytiwnyr~~I~~h~~------~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~  121 (328)
T COG5536          48 SVRALKLTQELIDKNPEFYTIWNYRFSILKHVQ------MVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELF  121 (328)
T ss_pred             CHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhh------hhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhC
Confidence            346777777788777766666543322222211      11224556778889999999999999999998888887765


Q ss_pred             h--chhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159         127 G--QFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE  204 (259)
Q Consensus       127 ~--~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi  204 (259)
                      .  ++.          .-....++.|+.||.|..+|.-.-.++....++              ..-..+..-.++-..+|
T Consensus       122 p~~~~~----------rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~--------------~N~S~~k~e~eytt~~I  177 (328)
T COG5536         122 PKPSWG----------RELFITKKLLDSDSRNYHVWSYRRWVLRTIEDL--------------FNFSDLKHELEYTTSLI  177 (328)
T ss_pred             CCcccc----------hhHHHHHHHhcccccccceeeeEeeeeecchhh--------------ccchhHHHHHHhHHHHH
Confidence            2  221          123456788899999988886554333111110              00022344466666777


Q ss_pred             hhCCCCcHHhHHHH---HHHHHHhCC------HHHHHHHHHHHhcCCCCCcc
Q psy9159         205 ELAPAPWKENQLLI---AKCYIEAGE------YAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       205 ~l~P~~~~~~~~~l---a~~~~~~g~------~~eA~~~~~kal~l~p~~~~  247 (259)
                      .-|| .+..+|-+.   -...+..|+      +++-+++...++-.+|++-+
T Consensus       178 ~tdi-~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S  228 (328)
T COG5536         178 ETDI-YNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQS  228 (328)
T ss_pred             hhCC-CChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccc
Confidence            7788 566666554   222233333      45666777777777777654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=84.76  E-value=4  Score=27.74  Aligned_cols=51  Identities=16%  Similarity=0.191  Sum_probs=39.8

Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHh---HHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKEN---QLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~---~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                      +++.++|+..++++++-.+ +....   .-.|..+|...|++.+++++-.+=+++
T Consensus        19 ~~~~~~Al~~W~~aL~k~~-~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   19 QNETQQALQKWRKALEKIT-DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             cchHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4778999999999999987 54444   445668899999999998886655443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=84.52  E-value=1.9  Score=36.47  Aligned_cols=59  Identities=17%  Similarity=-0.051  Sum_probs=53.6

Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~  249 (259)
                      .++++.|..+-++.+.++| ..+.-+...|.+|..+|-+.-|++.+...++.-|+++...
T Consensus       194 e~~~~~al~~~~r~l~l~P-~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         194 ELQWELALRVAERLLDLNP-EDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             hhchHHHHHHHHHHHhhCC-CChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence            4889999999999999999 6677789999999999999999999999999998887643

>KOG2300|consensus

Probab=83.98  E-value=17  Score=33.51  Aligned_cols=63  Identities=21%  Similarity=0.223  Sum_probs=44.8

Q ss_pred             ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHH--hHHHHHHHHHHhCCHHHHHH
Q psy9159         156 DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKE--NQLLIAKCYIEAGEYAKAVQ  233 (259)
Q Consensus       156 ~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~--~~~~la~~~~~~g~~~eA~~  233 (259)
                      .+..++.+|..+...                    |.++.|..+|..|+++.-.....  ...++|.+|...|+-+.--+
T Consensus       366 ~~~ih~LlGlys~sv--------------------~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~  425 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSV--------------------NCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYK  425 (629)
T ss_pred             HHHHHHHHhhHhhhc--------------------chHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHH
Confidence            456778888766553                    77999999999999986522223  35779999999888665554


Q ss_pred             HHHHH
Q psy9159         234 WLDKA  238 (259)
Q Consensus       234 ~~~ka  238 (259)
                      .++..
T Consensus       426 ~ld~i  430 (629)
T KOG2300|consen  426 ALDLI  430 (629)
T ss_pred             HHHhc
Confidence            44443

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=82.42  E-value=25  Score=31.81  Aligned_cols=50  Identities=16%  Similarity=0.142  Sum_probs=38.5

Q ss_pred             CCcHHHHHHHHHHHHhhC--------CCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         190 EPTAEDAIANCLKAEELA--------PAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~--------P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                      .|+|..|++..+.. +++        |.-.+..++++|-+|+.+++|.+|++.|...+-
T Consensus       135 LGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  135 LGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             ccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999887643 333        212345589999999999999999999998864

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=81.53  E-value=8  Score=33.07  Aligned_cols=47  Identities=15%  Similarity=0.055  Sum_probs=40.5

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchh
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIK   82 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~   82 (259)
                      +.+..+.  .. |+++.++..+++.+..+|-+-.+|..+-.+|...|+..
T Consensus       158 ~lae~~~--~~-~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~  204 (280)
T COG3629         158 KLAEALI--AC-GRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQS  204 (280)
T ss_pred             HHHHHHH--hc-ccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCch
Confidence            3444454  44 89999999999999999999999999999999999875

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=81.43  E-value=35  Score=31.38  Aligned_cols=141  Identities=10%  Similarity=0.044  Sum_probs=75.2

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------c-C--------cHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          53 LTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------E-N--------DKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        53 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~-~--------~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      .+++-|+.+|+|...|+.|-.-+-..|...+.           + .        ..+-..+.+..-...+-+||...=+ 
T Consensus        30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-  108 (660)
T COG5107          30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-  108 (660)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence            78888999999999999998888777765410           0 0        0011223455555555566554432 


Q ss_pred             hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCc
Q psy9159         113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPT  192 (259)
Q Consensus       113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~  192 (259)
                      .+.|..+-.-..+.........+.. ..++-+..-.++-.+|...++|...|.++..-..+...+.+           .+
T Consensus       109 ldLW~lYl~YIRr~n~~~tGq~r~~-i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQ-----------qr  176 (660)
T COG5107         109 LDLWMLYLEYIRRVNNLITGQKRFK-IYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQ-----------QR  176 (660)
T ss_pred             HhHHHHHHHHHHhhCcccccchhhh-hHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHH-----------HH
Confidence            3333222111111111111111110 11122222234457899999999999876555444433322           34


Q ss_pred             HHHHHHHHHHHHhh
Q psy9159         193 AEDAIANCLKAEEL  206 (259)
Q Consensus       193 ~~eAi~~~~kAi~l  206 (259)
                      .+.-...|++|+..
T Consensus       177 id~iR~~Y~ral~t  190 (660)
T COG5107         177 IDKIRNGYMRALQT  190 (660)
T ss_pred             HHHHHHHHHHHHcC
Confidence            66667777777764

>KOG4014|consensus

Probab=81.40  E-value=26  Score=28.18  Aligned_cols=126  Identities=19%  Similarity=0.186  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH--HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHH
Q psy9159          91 SEKYILQGIEYAKKAMELAPNNSNTQKWYGICV--GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQY  168 (259)
Q Consensus        91 ~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~--~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~  168 (259)
                      ..++|++|...+++--.-+. .+...+-+|...  +.-|+..       ....+.+.++.+  .+-+.+.+...+|.++.
T Consensus        47 i~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~-------~l~~a~r~~~~a--C~~n~~~aC~~~gLl~~  116 (248)
T KOG4014|consen   47 IQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDA-------SLSKAIRPMKIA--CDANIPQACRYLGLLHW  116 (248)
T ss_pred             HHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCcc-------CHHHHHHHHHHH--hccCCHHHHhhhhhhhc
Confidence            34567788877776655443 444445555322  2222221       222456666665  55778888888887654


Q ss_pred             HhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHh-----------------------
Q psy9159         169 EISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEA-----------------------  225 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~-----------------------  225 (259)
                      .-..             ..-..-+.++|.+++++|.+++-   ..+.++|...|+..                       
T Consensus       117 ~g~~-------------~r~~dpd~~Ka~~y~traCdl~~---~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~  180 (248)
T KOG4014|consen  117 NGEK-------------DRKADPDSEKAERYMTRACDLED---GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSL  180 (248)
T ss_pred             cCcC-------------CccCCCCcHHHHHHHHHhccCCC---chHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhh
Confidence            3110             00012347899999999999864   45566666666554                       


Q ss_pred             -CCHHHHHHHHHHHhcCC
Q psy9159         226 -GEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       226 -g~~~eA~~~~~kal~l~  242 (259)
                       ++.+.|.+.-.||.+++
T Consensus       181 ~kDMdka~qfa~kACel~  198 (248)
T KOG4014|consen  181 SKDMDKALQFAIKACELD  198 (248)
T ss_pred             hHhHHHHHHHHHHHHhcC
Confidence             55666777666666654

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=81.03  E-value=11  Score=31.90  Aligned_cols=64  Identities=13%  Similarity=0.219  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHH
Q psy9159          93 KYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY  166 (259)
Q Consensus        93 ~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~  166 (259)
                      +.++.|....++.+.++|+++.-+.--|.++.++|.+.          .+.+.++..++.-|+++.+-......
T Consensus       195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~----------vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYH----------VALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCch----------hhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            34679999999999999999988888999999999876          45688888899999999887776653

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=80.61  E-value=8.7  Score=32.80  Aligned_cols=160  Identities=10%  Similarity=-0.024  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q psy9159          47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGAN  126 (259)
Q Consensus        47 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~  126 (259)
                      .+.-++.+..+++.+|++-.+|.-.-.++...-.            ..+..-+..-++.+..||.|..+|..--++++..
T Consensus        90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~------------~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~i  157 (328)
T COG5536          90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPK------------PSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTI  157 (328)
T ss_pred             hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCC------------cccchhHHHHHHHhcccccccceeeeEeeeeecc
Confidence            3445677889999999999998766655443210            0133567778999999999999886555555332


Q ss_pred             ---hchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCc-HHHHHHHHHH
Q psy9159         127 ---GQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPT-AEDAIANCLK  202 (259)
Q Consensus       127 ---~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~eAi~~~~k  202 (259)
                         .++....       .-.++-..+|.-||.|.++|+..-.|-...-..            +.....+ +++-+++...
T Consensus       158 e~~~N~S~~k-------~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~------------~~visqk~l~~eL~~i~~  218 (328)
T COG5536         158 EDLFNFSDLK-------HELEYTTSLIETDIYNNSAWHHRYIWIERRFNR------------GDVISQKYLEKELEYIFD  218 (328)
T ss_pred             hhhccchhHH-------HHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhh------------cccchHHHHHHHHHHHHh
Confidence               2222111       113444667889999999999886544332110            1011111 6888999999


Q ss_pred             HHhhCCCCcHHhHHHHHHHHHH----hCCHHHHHHHHHHH
Q psy9159         203 AEELAPAPWKENQLLIAKCYIE----AGEYAKAVQWLDKA  238 (259)
Q Consensus       203 Ai~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~ka  238 (259)
                      ++-.+| ++..+|.++-.+...    .-.+.+-++.+.+-
T Consensus       219 ~if~~p-~~~S~w~y~r~~~~~~~~d~~~~~e~v~~L~k~  257 (328)
T COG5536         219 KIFTDP-DNQSVWGYLRGVSSEFATDIVMIGEKVEDLGKY  257 (328)
T ss_pred             hhhcCc-cccchhhHHHHHhccchHHHHHHHHHHHHHHhh
Confidence            999999 777777765544322    22456666666443

>KOG0890|consensus

Probab=80.43  E-value=42  Score=36.89  Aligned_cols=149  Identities=10%  Similarity=-0.022  Sum_probs=89.7

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      .+..++-| .+ |+++.|...+-.+.+..  -|++....|+.....|+..              .|+...++.++++-.+
T Consensus      1674 LqsAriaR-~a-G~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~--------------~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1674 LQSARIAR-LA-GHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDEL--------------NALSVLQEILSKNFPD 1735 (2382)
T ss_pred             HHHHHHHH-hc-ccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHH--------------HHHHHHHHHHHhhccc
Confidence            33445553 46 99999999888888766  4677778888888888764              8999999999776333


Q ss_pred             --------hHHHHH--HHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHH
Q psy9159         113 --------SNTQKW--YGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAV  182 (259)
Q Consensus       113 --------~~~~~~--la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~  182 (259)
                              |..-..  .+.+....+.+.+.... ......+..|..+.++.|.....|+.+|..|-+.     +......
T Consensus      1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n-~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl-----l~~~~~~ 1809 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGN-FESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL-----LEDYKSN 1809 (2382)
T ss_pred             ccCCccccchhhhhhhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH-----hhhhhcc
Confidence                    111111  11112222222211111 1123567899999999999889999999654332     1111000


Q ss_pred             HHhcCCCCCcHHH---HHHHHHHHHhhCC
Q psy9159         183 LIVSDLDEPTAED---AIANCLKAEELAP  208 (259)
Q Consensus       183 ~~~~~~~~g~~~e---Ai~~~~kAi~l~P  208 (259)
                         ..-++|++..   ++..|-+|+.-+-
T Consensus      1810 ---~~E~~g~~~~~l~~~~~~~~sl~yg~ 1835 (2382)
T KOG0890|consen 1810 ---KMEKSGRVLSLLKAIYFFGRALYYGN 1835 (2382)
T ss_pred             ---cccccccHHHHHHHHHHHHHHHHhcc
Confidence               0123466666   7777778887654

>KOG4814|consensus

Probab=80.26  E-value=29  Score=33.27  Aligned_cols=50  Identities=22%  Similarity=0.283  Sum_probs=29.6

Q ss_pred             CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                      .+.+.|.+++++|-+.+| .++-..+.+-.+....|+-++|+....+....
T Consensus       408 ~QLD~A~E~~~EAE~~d~-~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  408 EQLDNAVEVYQEAEEVDR-QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            345666666666666666 44545555555566666666666666655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-04

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 35/219 (15%), Positives = 74/219 (33%), Gaps = 25/219 (11%)

Query: 37  RLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYIL 96
           RL  +    +        + LN   P++  +   LA     L+ ++    ++   EK + 
Sbjct: 184 RLDNWPPSQNAIDPLRQAIRLN---PDNQYLKVLLALK---LHKMREEGEEEGEGEKLV- 236

Query: 97  QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD 156
                 ++A+E AP  ++  +          +     + I+        + KA++  P +
Sbjct: 237 ------EEALEKAPGVTDVLRSAAKFYRRKDEPD---KAIEL-------LKKALEYIPNN 280

Query: 157 FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQL 216
             L+   G             R+  +     L E     A+A+  KA+E           
Sbjct: 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGH-AVAHLKKADEANDN-LFRVCS 338

Query: 217 LIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLSTTY 255
           ++A  +  A +Y +A  +  K  +  +       L   Y
Sbjct: 339 ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRY 377

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 44/235 (18%), Positives = 76/235 (32%), Gaps = 35/235 (14%)

Query: 11  FQFAFVQFGECAELFAVNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYR 70
            + A     +  EL    ++   EI  L+ +G   + A  Y     L++ Q    D +  
Sbjct: 67  NEAALECLRKAEELIQQEHADQAEIRSLVTWG---NYAWVYYHMGRLSDVQ-IYVDKVKH 122

Query: 71  LAKACHCLYDIKRRENDKEASEKYILQG-------IEYAKKAMELAPNNSNTQKWYGICV 123
           + +     Y I+  E D E     +  G           +KA+E  P N        I  
Sbjct: 123 VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182

Query: 124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVL 183
                +   +  I         + +AI++ P +  L  L     +++ +    E      
Sbjct: 183 YRLDNWPPSQNAIDP-------LRQAIRLNPDNQYLKVLLALKLHKMREEGEEE------ 229

Query: 184 IVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA 238
                      +      +A E AP    +     AK Y    E  KA++ L KA
Sbjct: 230 ----------GEGEKLVEEALEKAPGVT-DVLRSAAKFYRRKDEPDKAIELLKKA 273

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 45/178 (25%)

Query: 61  QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYG 120
            P   D L  LA       +    E   EA        +   +KA+E+ P  +       
Sbjct: 5   CPTHADSLNNLANI---KREQGNIE---EA--------VRLYRKALEVFPEFAAAHSNLA 50

Query: 121 ICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKI 180
             +   G+ Q   E +           +AI+++P     YS  G    E+  +       
Sbjct: 51  SVLQQQGKLQ---EALMH-------YKEAIRISPTFADAYSNMGNTLKEMQDV------- 93

Query: 181 AVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA 238
                        + A+    +A ++ PA   +    +A  + ++G   +A+     A
Sbjct: 94  -------------QGALQCYTRAIQINPAFA-DAHSNLASIHKDSGNIPEAIASYRTA 137

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 29/224 (12%), Positives = 64/224 (28%), Gaps = 49/224 (21%)

Query: 37  RLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYIL 96
             L     +D+ +     +   N      D+L   A                +       
Sbjct: 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF------IDV------ 324

Query: 97  QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD 156
             +    K +E+ P N +    +   +  +G+   L              N  +   P+ 
Sbjct: 325 --LAITTKILEIDPYNLDVYPLHLASLHESGEKNKL---YLIS-------NDLVDRHPEK 372

Query: 157 FTLYSLKGRYQYEISKL----SFFERKIAV------------LIVSDLDEPTAEDAIANC 200
              +   G Y   ++K+     +F +   +               +   E   + AI+  
Sbjct: 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH--DQAISAY 430

Query: 201 LKAEELAP---APWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
             A  L      P+    L +   +++ G    A ++L  + A+
Sbjct: 431 TTAARLFQGTHLPY----LFLGMQHMQLGNILLANEYLQSSYAL 470

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 47/256 (18%), Positives = 88/256 (34%), Gaps = 64/256 (25%)

Query: 1   MYSKLF-----------VLSLFQFAFVQFGECAELFAVNNSKYPEIDRLLYYGKKDDKAK 49
           M+ +L            +LSL  F  ++      +      KY     L+   +K  K  
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIK--SDVMVVVNKLHKY----SLV---EKQPKES 424

Query: 50  AY---NLTMELNNKQPNDPDV------LYRLAKACHCLYDIKRRENDKEASEKYILQGIE 100
                ++ +EL  K  N+  +       Y + K      D+     D     +Y    I 
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPYLD-----QYFYSHIG 478

Query: 101 YAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLY 160
           +  K +E     +  +  +      + +F  L++KI+      D        +  + TL 
Sbjct: 479 HHLKNIEHPERMTLFRMVF-----LDFRF--LEQKIR-----HDSTAWNASGSILN-TLQ 525

Query: 161 SLKGRYQYEISKLS-FFERKIAVLIVSDLDE--PTAEDAIANCLKAEELAPAPWKENQLL 217
            LK  Y+  I      +ER     +V+ + +  P  E+ +      + L  A   E++ +
Sbjct: 526 QLK-FYKPYICDNDPKYER-----LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579

Query: 218 IAKCYIEAGEYAKAVQ 233
               + EA    K VQ
Sbjct: 580 ----FEEA---HKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 22/132 (16%)

Query: 141 VFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFER--KI--AVLIV--SDLDEPTAE 194
           V  D++   I+ +         +  +     +LS F     I   +L +   D+ +    
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFD----RLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 195 DAIANCLKAEELAPAPWKENQLLIAKCYIE-----AGEYAKAVQWLDKAKAIPVVSYESH 249
             + N L    L     KE+ + I   Y+E       EYA     +D        +++S 
Sbjct: 406 V-VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP--KTFDSD 462

Query: 250 DLSTT----YSY 257
           DL       Y Y
Sbjct: 463 DLIPPYLDQYFY 474

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 26/191 (13%), Positives = 51/191 (26%), Gaps = 52/191 (27%)

Query: 52  NLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN 111
            +  E  +    + DV+  LA+  +   D       K           +     ME  P 
Sbjct: 9   TVIPESVDGLQENLDVVVSLAERHYYNCDF------KMC--------YKLTSVVMEKDPF 54

Query: 112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEIS 171
           +++    +   +    +   L              +K + + P +   +   G Y   + 
Sbjct: 55  HASCLPVHIGTLVELNKANELFY----------LSHKLVDLYPSNPVSWFAVGCYYLMVG 104

Query: 172 KLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL----APAPWKENQLLIAKCYIEAGE 227
             +                   E A     KA  L     PA W    +     +    E
Sbjct: 105 HKN-------------------EHARRYLSKATTLEKTYGPA-W----IAYGHSFAVESE 140

Query: 228 YAKAVQWLDKA 238
           + +A+     A
Sbjct: 141 HDQAMAAYFTA 151

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 21/186 (11%), Positives = 47/186 (25%), Gaps = 31/186 (16%)

Query: 56  ELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNT 115
            L    P+   +L    +A   L     +  ++           E   + ++ +P  +  
Sbjct: 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNR---------ASELLGEIVQSSPEFTYA 235

Query: 116 QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF 175
           +    +          L EK    +         +        +Y +K        K   
Sbjct: 236 RAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKT-- 293

Query: 176 FERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWL 235
                             +++        +L  +    N +L+ K Y   G   +A    
Sbjct: 294 ------------------DESYQAINTGIDLEMSWL--NYVLLGKVYEMKGMNREAADAY 333

Query: 236 DKAKAI 241
             A  +
Sbjct: 334 LTAFNL 339

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 25/211 (11%), Positives = 60/211 (28%), Gaps = 46/211 (21%)

Query: 38  LLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQ 97
            +  G+            +L     ++ +  Y+++      Y +   E            
Sbjct: 187 FIKEGEPRKAISDLKAASKLK---NDNTEAFYKIST---LYYQLGDHE-----------L 229

Query: 98  GIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRD---QMNKAIQMAP 154
            +   ++ ++L  ++      Y      N   +S +E I+ G  + D   +    ++  P
Sbjct: 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR-YTDATSKYESVMKTEP 288

Query: 155 KD----FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAP 210
                             +  K                      +AI  C +  ++ P  
Sbjct: 289 SIAEYTVRSKERICHCFSKDEKP--------------------VEAIRVCSEVLQMEPDN 328

Query: 211 WKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
                   A+ Y+    Y +A+Q  + A+  
Sbjct: 329 VN-ALKDRAEAYLIEEMYDEAIQDYETAQEH 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 21/217 (9%), Positives = 54/217 (24%), Gaps = 58/217 (26%)

Query: 38  LLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQ 97
            +  G+            +L     ++ +  Y+++      Y +   E            
Sbjct: 164 FIKEGEPRKAISDLKAASKLK---SDNTEAFYKIST---LYYQLGDHE-----------L 206

Query: 98  GIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQ---------MNK 148
            +   ++ ++L  ++      Y          + L + I+                    
Sbjct: 207 SLSEVRECLKLDQDHKRCFAHYKQV-------KKLNKLIESAEELIRDGRYTDATSKYES 259

Query: 149 AIQMAPKD----FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE 204
            ++  P                  +  K                      +AI  C +  
Sbjct: 260 VMKTEPSVAEYTVRSKERICHCFSKDEKP--------------------VEAIRICSEVL 299

Query: 205 ELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
           ++ P          A+ Y+    Y +A+Q  + A+  
Sbjct: 300 QMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.94
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.94
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.91
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.91
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.91
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.91
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.9
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.88
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.88
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.88
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.88
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.88
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.88
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.87
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.87
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.87
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.87
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.86
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.86
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.86
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.86
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.86
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.86
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.86
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.86
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.86
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.85
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.85
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.85
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.85
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.85
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.85
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.85
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.84
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.84
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.84
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.83
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.83
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.83
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.83
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.83
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.83
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.83
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.83
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.82
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.82
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.82
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.82
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.81
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.81
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.8
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.8
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.8
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.8
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.79
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.79
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.79
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.79
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.78
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.78
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.78
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.78
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.77
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.76
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.76
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.76
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.76
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.76
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.75
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.75
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.75
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.72
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.71
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.71
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.71
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.7
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.7
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.7
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.7
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.7
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.7
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.7
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.69
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.69
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.69
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.68
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.68
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.68
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.68
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.68
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.68
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.68
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.67
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.67
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.67
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.66
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.66
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.66
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.66
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.66
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.66
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.65
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.65
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.65
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.65
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.65
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.65
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.65
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.65
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.64
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.64
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.64
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.64
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.64
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.63
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.63
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.63
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.63
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.62
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.62
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.61
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.61
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.61
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.6
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.6
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.6
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.6
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.6
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.6
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.59
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.59
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.58
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.57
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.57
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.56
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.56
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.56
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.56
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.55
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.55
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.55
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.54
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.54
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.54
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.53
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.53
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.52
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.52
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.52
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.52
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.51
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.51
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.5
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.5
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.49
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.49
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.49
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.47
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.46
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.45
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.45
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.45
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.44
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.43
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.42
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.41
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.41
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.41
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.38
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.35
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.35
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.35
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.34
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.32
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.31
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.31
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.25
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.24
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.23
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.21
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.21
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.19
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.17
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.17
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.13
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.13
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.11
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.11
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.08
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.07
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.06
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.06
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.06
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.01
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.97
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.89
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.83
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.83
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.79
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.76
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.71
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.69
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.68
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.6
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.42
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.37
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.36
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.3
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.19
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.17
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.04
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.98
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.9
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.83
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.75
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.58
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.54
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.45
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.4
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.29
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.23
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.21
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.71
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.46
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.81
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.57
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.51
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.28
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.21
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.19
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	91.44
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.0
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.43
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	87.29
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	87.24
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	86.07
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	85.15
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	80.69

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.94  E-value=1.5e-25  Score=176.98  Aligned_cols=166  Identities=19%  Similarity=0.122  Sum_probs=153.5

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      ..+..+.  .. |++++|++.|+++++.+|+++++++.+|.+|...|++.              +|+..+++++..+|++
T Consensus        10 ~lG~~~~--~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--------------~a~~~~~~~~~~~~~~   72 (184)
T 3vtx_A           10 DIGDKKR--TK-GDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPN--------------DAIESLKKFVVLDTTS   72 (184)
T ss_dssp             HHHHHHH--HH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCCCC
T ss_pred             HHHHHHH--Hc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHhcCchh
Confidence            3455555  55 99999999999999999999999999999999999875              9999999999999999


Q ss_pred             hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCc
Q psy9159         113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPT  192 (259)
Q Consensus       113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~  192 (259)
                      +.++..+|.++...+++.          .+...++++++++|+++.++..+|.++...                    |+
T Consensus        73 ~~~~~~~~~~~~~~~~~~----------~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~--------------------g~  122 (184)
T 3vtx_A           73 AEAYYILGSANFMIDEKQ----------AAIDALQRAIALNTVYADAYYKLGLVYDSM--------------------GE  122 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TC
T ss_pred             HHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCccchHHHHHHHHHHHHh--------------------CC
Confidence            999999999999888876          467889999999999999999999999885                    88


Q ss_pred             HHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         193 AEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       193 ~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      +++|+++|+++++++| +++.++.++|.+|..+|++++|++.|++|++++|.++
T Consensus       123 ~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          123 HDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             chhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence            9999999999999999 7899999999999999999999999999999998764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.94  E-value=2.3e-25  Score=181.82  Aligned_cols=168  Identities=18%  Similarity=0.131  Sum_probs=154.7

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP  110 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P  110 (259)
                      ....+..++  .. |++++|+..++++++.+|+++++++.+|.++...|++.              +|+..++++++++|
T Consensus         8 ~~~lg~~~~--~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~--------------~A~~~~~~al~~~P   70 (217)
T 2pl2_A            8 PLRLGVQLY--AL-GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVN--------------PALENGKTLVARTP   70 (217)
T ss_dssp             HHHHHHHHH--HT-TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCT
T ss_pred             HHHHHHHHH--Hc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCC
Confidence            345666676  66 99999999999999999999999999999999999875              99999999999999


Q ss_pred             CChHHHHHHHHHHHHh-----------hchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHH
Q psy9159         111 NNSNTQKWYGICVGAN-----------GQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERK  179 (259)
Q Consensus       111 ~~~~~~~~la~~~~~~-----------~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~  179 (259)
                      +++.++..+|.++...           |++.          ++...++++++++|+++.+|..+|.++...         
T Consensus        71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~----------~A~~~~~~al~~~P~~~~~~~~lg~~~~~~---------  131 (217)
T 2pl2_A           71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLE----------QALSVLKDAERVNPRYAPLHLQRGLVYALL---------  131 (217)
T ss_dssp             TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhcccccCHH----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHc---------
Confidence            9999999999999988           6665          578999999999999999999999999875         


Q ss_pred             HHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         180 IAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       180 ~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                                 |++++|+.+|+++++++  +++.++.++|.+|..+|++++|+..|+++++++|++++
T Consensus       132 -----------g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  186 (217)
T 2pl2_A          132 -----------GERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD  186 (217)
T ss_dssp             -----------TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             -----------CChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence                       88999999999999999  46899999999999999999999999999999998774

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.91  E-value=1.2e-23  Score=171.68  Aligned_cols=177  Identities=16%  Similarity=0.149  Sum_probs=159.0

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQP-NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME  107 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~  107 (259)
                      +..+..+..++  .. |++++|+..|+++++.+| .++.+++.+|.++...|++.              +|+..++++++
T Consensus         8 ~~~~~~g~~~~--~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~--------------~A~~~~~~al~   70 (228)
T 4i17_A            8 NQLKNEGNDAL--NA-KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYK--------------EAADYFDIAIK   70 (228)
T ss_dssp             HHHHHHHHHHH--HT-TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--Hc-cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHH--------------HHHHHHHHHHH
Confidence            34566777777  67 999999999999999999 99999999999999999875              99999999999


Q ss_pred             hCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh-------hHHHHHHHHHHHhhccchHHHHH
Q psy9159         108 LAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF-------TLYSLKGRYQYEISKLSFFERKI  180 (259)
Q Consensus       108 ~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~-------~~~~~lG~~~~~~~~~~~~~~~~  180 (259)
                      ++|+++.++..+|.++...|++.          .+...++++++++|+++       .+|+.+|.++...          
T Consensus        71 ~~p~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~----------  130 (228)
T 4i17_A           71 KNYNLANAYIGKSAAYRDMKNNQ----------EYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA----------  130 (228)
T ss_dssp             TTCSHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT----------
T ss_pred             hCcchHHHHHHHHHHHHHcccHH----------HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh----------
Confidence            99999999999999999999887          56789999999999999       5577777776653          


Q ss_pred             HHHHhcCCCCCcHHHHHHHHHHHHhhCCCC--cHHhHHHHHHHHHHhCCH---------------------------HHH
Q psy9159         181 AVLIVSDLDEPTAEDAIANCLKAEELAPAP--WKENQLLIAKCYIEAGEY---------------------------AKA  231 (259)
Q Consensus       181 ~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~--~~~~~~~la~~~~~~g~~---------------------------~eA  231 (259)
                                |++++|+.+|+++++++| +  ++.++.++|.+|...|+.                           ++|
T Consensus       131 ----------~~~~~A~~~~~~al~~~p-~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A  199 (228)
T 4i17_A          131 ----------GNIEKAEENYKHATDVTS-KKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKA  199 (228)
T ss_dssp             ----------TCHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ----------ccHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence                      889999999999999999 7  789999999999999998                           999


Q ss_pred             HHHHHHHhcCCCCCccchhhhh
Q psy9159         232 VQWLDKAKAIPVVSYESHDLST  253 (259)
Q Consensus       232 ~~~~~kal~l~p~~~~~~~~~~  253 (259)
                      +++++++++++|++++....+.
T Consensus       200 ~~~~~~a~~l~p~~~~~~~~l~  221 (228)
T 4i17_A          200 VDYLGEAVTLSPNRTEIKQMQD  221 (228)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCHHHHHHHH
Confidence            9999999999999887655543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.91  E-value=8.4e-24  Score=187.24  Aligned_cols=166  Identities=10%  Similarity=0.005  Sum_probs=151.5

Q ss_pred             HHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-hhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          34 EIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYD-IKRRENDKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        34 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      .+..+.  .. |++++|+..+++++..+|+++.+|+.+|.++..+|+ +.              +|+..++++++++|++
T Consensus       103 lg~~~~--~~-g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~--------------eAl~~~~~al~l~P~~  165 (382)
T 2h6f_A          103 FRAVLQ--RD-ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLH--------------EEMNYITAIIEEQPKN  165 (382)
T ss_dssp             HHHHHH--HT-CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHH--------------HHHHHHHHHHHHCTTC
T ss_pred             HHHHHH--HC-CChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHH--------------HHHHHHHHHHHHCCCC
Confidence            343444  55 999999999999999999999999999999999996 65              9999999999999999


Q ss_pred             hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCc
Q psy9159         113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPT  192 (259)
Q Consensus       113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~  192 (259)
                      +.+|.++|.++..+|++.          .++..++++|+++|+++.+|+.+|.++..+                    |+
T Consensus       166 ~~a~~~~g~~~~~~g~~~----------eAl~~~~kal~ldP~~~~a~~~lg~~~~~~--------------------g~  215 (382)
T 2h6f_A          166 YQVWHHRRVLVEWLRDPS----------QELEFIADILNQDAKNYHAWQHRQWVIQEF--------------------KL  215 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCT----------THHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------------TC
T ss_pred             HHHHHHHHHHHHHccCHH----------HHHHHHHHHHHhCccCHHHHHHHHHHHHHc--------------------CC
Confidence            999999999999999988          467899999999999999999999999876                    78


Q ss_pred             HHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHH-hCCHHHH-----HHHHHHHhcCCCCCcc
Q psy9159         193 AEDAIANCLKAEELAPAPWKENQLLIAKCYIE-AGEYAKA-----VQWLDKAKAIPVVSYE  247 (259)
Q Consensus       193 ~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~-~g~~~eA-----~~~~~kal~l~p~~~~  247 (259)
                      +++|+.+|+++++++| ++..+|.++|.++.. .|..++|     +++|+++++++|++.+
T Consensus       216 ~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~  275 (382)
T 2h6f_A          216 WDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES  275 (382)
T ss_dssp             CTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH
Confidence            9999999999999999 789999999999999 5555888     5999999999998874

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.91  E-value=1.8e-23  Score=169.54  Aligned_cols=170  Identities=14%  Similarity=0.091  Sum_probs=149.4

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHH----------------HHHHHHHhhchhcccCcHHHHHH
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYR----------------LAKACHCLYDIKRRENDKEASEK   93 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~----------------la~~~~~~g~~~~~~~~~~~~~~   93 (259)
                      ..+.++..++  .. |++++|+..|+++++.+|+++++++.                +|.+|...|++.           
T Consensus         6 ~~~~~g~~~~--~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-----------   71 (208)
T 3urz_A            6 EMLQKVSAAI--EA-GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYD-----------   71 (208)
T ss_dssp             HHHHHHHHHH--HT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHH-----------
T ss_pred             HHHHHHHHHH--HC-CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHH-----------
Confidence            4577888888  67 99999999999999999999999999                999999999875           


Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhcc
Q psy9159          94 YILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKL  173 (259)
Q Consensus        94 ~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~  173 (259)
                         +|+..++++++++|+++.++..+|.++...|++.          .|...|+++++++|+++.+|+.+|.+++..+. 
T Consensus        72 ---~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~-  137 (208)
T 3urz_A           72 ---KAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEK----------DALRMYEKILQLEADNLAANIFLGNYYYLTAE-  137 (208)
T ss_dssp             ---HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-
T ss_pred             ---HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH-
Confidence               9999999999999999999999999999999987          57899999999999999999999999877543 


Q ss_pred             chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                                       +..+.++..|++++..+|  ...+++.+|.++..+|++++|+++|++|++++|++.
T Consensus       138 -----------------~~~~~~~~~~~~~~~~~~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          138 -----------------QEKKKLETDYKKLSSPTK--MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             -----------------HHHHHHHHHHC---CCCH--HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred             -----------------HHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence                             346788889999876555  245688899999999999999999999999999743

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.91  E-value=1.9e-23  Score=198.42  Aligned_cols=166  Identities=15%  Similarity=0.097  Sum_probs=154.1

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      ..+..+.  .. |++++|+..|+++++.+|+++++++++|.+|..+|++.              +|++.|++|++++|++
T Consensus        14 nLG~~~~--~~-G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~--------------eA~~~~~~Al~l~P~~   76 (723)
T 4gyw_A           14 NLANIKR--EQ-GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ--------------EALMHYKEAIRISPTF   76 (723)
T ss_dssp             HHHHHHH--HT-TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTC
T ss_pred             HHHHHHH--Hc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCCC
Confidence            3454555  56 99999999999999999999999999999999999975              9999999999999999


Q ss_pred             hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCc
Q psy9159         113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPT  192 (259)
Q Consensus       113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~  192 (259)
                      +.+|.++|.++...|++.          +|.+.|++||+++|+++.+|+.+|.++...                    |+
T Consensus        77 ~~a~~nLg~~l~~~g~~~----------~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~--------------------g~  126 (723)
T 4gyw_A           77 ADAYSNMGNTLKEMQDVQ----------GALQCYTRAIQINPAFADAHSNLASIHKDS--------------------GN  126 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TC
T ss_pred             HHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------------CC
Confidence            999999999999999987          567899999999999999999999999875                    88


Q ss_pred             HHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         193 AEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       193 ~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      +++|+.+|++|++++| ++..++.+||.+|..+|++++|++.+++++++.|+..
T Consensus       127 ~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~  179 (723)
T 4gyw_A          127 IPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL  179 (723)
T ss_dssp             HHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHH
Confidence            9999999999999999 7899999999999999999999999999999876643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.90  E-value=2.5e-22  Score=163.71  Aligned_cols=171  Identities=18%  Similarity=0.151  Sum_probs=133.7

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      ...+..+.  .. |++++|+..++++++.+|+++++++.+|.++...+...   .......+.+++|+..++++++++|+
T Consensus        43 ~~lg~~~~--~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~---~~~~~~~g~~~~A~~~~~~al~~~P~  116 (217)
T 2pl2_A           43 YWLARTQL--KL-GLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQA---EDRERGKGYLEQALSVLKDAERVNPR  116 (217)
T ss_dssp             HHHHHHHH--HT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHH--Hc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhh---hhhcccccCHHHHHHHHHHHHHhCcc
Confidence            34455555  56 99999999999999999999999999999999982111   01111123345999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCC
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEP  191 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g  191 (259)
                      ++.++..+|.++...|++.          ++...++++++++ +++.+++.+|.++...                    |
T Consensus       117 ~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~-~~~~~~~~la~~~~~~--------------------g  165 (217)
T 2pl2_A          117 YAPLHLQRGLVYALLGERD----------KAEASLKQALALE-DTPEIRSALAELYLSM--------------------G  165 (217)
T ss_dssp             CHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHC-CCHHHHHHHHHHHHHH--------------------T
T ss_pred             cHHHHHHHHHHHHHcCChH----------HHHHHHHHHHhcc-cchHHHHHHHHHHHHc--------------------C
Confidence            9999999999999999987          5778999999999 9999999999999886                    8


Q ss_pred             cHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         192 TAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       192 ~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                      ++++|+.+|+++++++| ++..++..+|.++..+|++++|++.++++.-
T Consensus       166 ~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          166 RLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             CHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC----------------
T ss_pred             CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            89999999999999999 7899999999999999999999999998753

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.88  E-value=4.9e-21  Score=166.39  Aligned_cols=201  Identities=15%  Similarity=0.100  Sum_probs=165.9

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      ...+..+..++  .. |++++|+..++++++.+|+++.+++.+|.+|...|++.              +|+..+++++++
T Consensus        66 ~~~~~~~~~~~--~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--------------~A~~~~~~al~~  128 (365)
T 4eqf_A           66 PGAFEEGLKRL--KE-GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQ--------------AAIVALQRCLEL  128 (365)
T ss_dssp             TTHHHHHHHHH--HH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHH--HC-CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHhc
Confidence            34677787777  56 99999999999999999999999999999999999875              999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhhchhhHHHHHh----------------------------------cHHHHHHHHHHHHccCC
Q psy9159         109 APNNSNTQKWYGICVGANGQFQSLKEKIK----------------------------------CGVVFRDQMNKAIQMAP  154 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~----------------------------------~~~~a~~~~~kAl~l~P  154 (259)
                      +|+++.++..+|.++...|++..+.....                                  ....+...++++++++|
T Consensus       129 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  208 (365)
T 4eqf_A          129 QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG  208 (365)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc
Confidence            99999999999999999998876543221                                  12357789999999999


Q ss_pred             C--ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC--------------CCCcHHHHHHHHHHHHhhCCCCcHHhHHHH
Q psy9159         155 K--DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL--------------DEPTAEDAIANCLKAEELAPAPWKENQLLI  218 (259)
Q Consensus       155 ~--~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~eAi~~~~kAi~l~P~~~~~~~~~l  218 (259)
                      +  ++.+++.+|.++...++.+.....+..++-..+              ..|++++|+.+|+++++++| ++..++..+
T Consensus       209 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l  287 (365)
T 4eqf_A          209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNL  287 (365)
T ss_dssp             SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHH
Confidence            9  899999999999998776543333322211111              15899999999999999999 678889999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         219 AKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       219 a~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      |.+|..+|++++|++.|++++++.|.+..
T Consensus       288 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~  316 (365)
T 4eqf_A          288 GISCINLGAYREAVSNFLTALSLQRKSRN  316 (365)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccCC
Confidence            99999999999999999999999887654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.88  E-value=1.7e-21  Score=162.36  Aligned_cols=177  Identities=11%  Similarity=0.038  Sum_probs=153.9

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHH
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND---PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKA  105 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~ka  105 (259)
                      +..+..+..++  .. |++++|+..|+++++.+|++   +++++.+|.+|..+|++.              +|+..++++
T Consensus        16 ~~~~~~a~~~~--~~-g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~--------------~A~~~~~~~   78 (261)
T 3qky_A           16 QEAFERAMEFY--NQ-GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYL--------------LAASEYERF   78 (261)
T ss_dssp             HHHHHHHHHHH--HT-TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHH
T ss_pred             HHHHHHHHHHH--Hh-CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHH--------------HHHHHHHHH
Confidence            45577788888  67 99999999999999999999   999999999999999876              999999999


Q ss_pred             HHhCCCC---hHHHHHHHHHHHH--------hhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHH--------------
Q psy9159         106 MELAPNN---SNTQKWYGICVGA--------NGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLY--------------  160 (259)
Q Consensus       106 l~~~P~~---~~~~~~la~~~~~--------~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~--------------  160 (259)
                      +++.|++   +.+++.+|.++..        .|++.          .|...++++++++|+++.++              
T Consensus        79 l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~----------~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~  148 (261)
T 3qky_A           79 IQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTR----------KAIEAFQLFIDRYPNHELVDDATQKIRELRAKLA  148 (261)
T ss_dssp             HHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHH----------HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCchhHHHHHHHHHHHHHhcccccccchhHH----------HHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHH
Confidence            9998865   5678899999988        66665          57899999999999998887              


Q ss_pred             ---HHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCC--cHHhHHHHHHHHHHh----------
Q psy9159         161 ---SLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAP--WKENQLLIAKCYIEA----------  225 (259)
Q Consensus       161 ---~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~--~~~~~~~la~~~~~~----------  225 (259)
                         +.+|.+++..                    |++++|+.+|+++++..|++  ...+++.+|.+|..+          
T Consensus       149 ~~~~~la~~~~~~--------------------g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~  208 (261)
T 3qky_A          149 RKQYEAARLYERR--------------------ELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQP  208 (261)
T ss_dssp             HHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred             HHHHHHHHHHHHc--------------------cCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhccc
Confidence               6667777664                    88999999999999999932  356899999999988          


Q ss_pred             CCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         226 GEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       226 g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                      |++++|+..|+++++..|+++.-....
T Consensus       209 ~~~~~A~~~~~~~~~~~p~~~~~~~a~  235 (261)
T 3qky_A          209 ERYRRAVELYERLLQIFPDSPLLRTAE  235 (261)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             chHHHHHHHHHHHHHHCCCChHHHHHH
Confidence            999999999999999999987654443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.88  E-value=1e-20  Score=165.87  Aligned_cols=188  Identities=17%  Similarity=0.089  Sum_probs=126.3

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      |++++|+..++++++.+|+++.++..+|.++...|++.              +|+..++++++++|+++.++..+|.++.
T Consensus       149 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--------------~A~~~~~~al~~~p~~~~~~~~lg~~~~  214 (388)
T 1w3b_A          149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW--------------LAIHHFEKAVTLDPNFLDAYINLGNVLK  214 (388)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            77777777777777777777777777777777666654              4555555555555555555555555544


Q ss_pred             HhhchhhHHHHH------------------------hcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHH
Q psy9159         125 ANGQFQSLKEKI------------------------KCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKI  180 (259)
Q Consensus       125 ~~~~~~~~~~~~------------------------~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~  180 (259)
                      ..+++..+....                        +....+...++++++++|+++.++..+|.++...++.+.....+
T Consensus       215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  294 (388)
T 1w3b_A          215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY  294 (388)
T ss_dssp             TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            444443322110                        11125667888888888888888888888888777654333322


Q ss_pred             HHHHhcC--------------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         181 AVLIVSD--------------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       181 ~~~~~~~--------------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      ..++...              ...|++++|+.+|+++++++| ++..++..+|.+|...|++++|++.|+++++++|+++
T Consensus       295 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~  373 (388)
T 1w3b_A          295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA  373 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence            2211111              125889999999999999999 6788889999999999999999999999999888765


Q ss_pred             c
Q psy9159         247 E  247 (259)
Q Consensus       247 ~  247 (259)
                      +
T Consensus       374 ~  374 (388)
T 1w3b_A          374 D  374 (388)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.88  E-value=8.1e-21  Score=166.52  Aligned_cols=177  Identities=15%  Similarity=0.107  Sum_probs=128.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      |++++|...++++++.+|.++++++.+|.+|...|++.              +|+..++++++++|+++.++..+|.++.
T Consensus        47 ~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~--------------~A~~~~~~al~~~p~~~~~~~~l~~~~~  112 (388)
T 1w3b_A           47 RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ--------------EAIEHYRHALRLKPDFIDGYINLAAALV  112 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence            66777777777777777777777777777776666654              8888888888888888888888888888


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcC--------------CCC
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSD--------------LDE  190 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~--------------~~~  190 (259)
                      ..|++.          .+...++++++++|+++.++..+|.++...++.+...+.+..++...              ...
T Consensus       113 ~~g~~~----------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  182 (388)
T 1w3b_A          113 AAGDME----------GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ  182 (388)
T ss_dssp             HHSCSS----------HHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HcCCHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            888776          45678888888888888888888888877666543332222211111              125


Q ss_pred             CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      |++++|+.+|+++++++| ++..++..+|.++...|++++|+..++++++++|+++
T Consensus       183 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  237 (388)
T 1w3b_A          183 GEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA  237 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred             CCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH
Confidence            778888888888888888 6677778888888888888888888888888777654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.88  E-value=5.9e-21  Score=148.76  Aligned_cols=170  Identities=17%  Similarity=0.125  Sum_probs=155.3

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      ...+..++  .. |++++|+..++++++.+|+++.+++.+|.++...|++.              +|+..++++++.+|+
T Consensus        12 ~~~~~~~~--~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~A~~~~~~~~~~~~~   74 (186)
T 3as5_A           12 RDKGISHA--KA-GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVD--------------RGTELLERSLADAPD   74 (186)
T ss_dssp             HHHHHHHH--HH-TCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHH--Hh-cCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHhcCCC
Confidence            34455555  55 99999999999999999999999999999999999875              999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCC
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEP  191 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g  191 (259)
                      ++.++..+|.++...|++.          .+...++++++++|+++.++..+|.++...                    |
T Consensus        75 ~~~~~~~~a~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------------------~  124 (186)
T 3as5_A           75 NVKVATVLGLTYVQVQKYD----------LAVPLLIKVAEANPINFNVRFRLGVALDNL--------------------G  124 (186)
T ss_dssp             CHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------T
T ss_pred             CHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHhcCcHhHHHHHHHHHHHHHc--------------------C
Confidence            9999999999999998887          567899999999999999999999998874                    8


Q ss_pred             cHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159         192 TAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       192 ~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~  249 (259)
                      ++++|+.+++++++.+| ....++..+|.++...|++++|+++++++++++|+++...
T Consensus       125 ~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  181 (186)
T 3as5_A          125 RFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL  181 (186)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGGG
T ss_pred             cHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhhH
Confidence            89999999999999999 7789999999999999999999999999999998876543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.88  E-value=8.6e-22  Score=187.09  Aligned_cols=143  Identities=18%  Similarity=0.226  Sum_probs=134.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcH
Q psy9159          60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCG  139 (259)
Q Consensus        60 ~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~  139 (259)
                      ..|++++++.+||.+|..+|++.              +|+..|++||+++|+++.+|.++|.++...|++.         
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~--------------eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~---------   60 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIE--------------EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ---------   60 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH---------
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH---------
Confidence            47999999999999999999975              9999999999999999999999999999999987         


Q ss_pred             HHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHH
Q psy9159         140 VVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIA  219 (259)
Q Consensus       140 ~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la  219 (259)
                       +|+..|++||+++|+++.+|+.+|.++..+                    |++++|+++|++|++++| ++..++.+||
T Consensus        61 -eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~--------------------g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg  118 (723)
T 4gyw_A           61 -EALMHYKEAIRISPTFADAYSNMGNTLKEM--------------------QDVQGALQCYTRAIQINP-AFADAHSNLA  118 (723)
T ss_dssp             -HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             -HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence             578999999999999999999999999875                    889999999999999999 7899999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         220 KCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       220 ~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      .+|..+|++++|++.|++|++++|++++
T Consensus       119 ~~~~~~g~~~eAi~~~~~Al~l~P~~~~  146 (723)
T 4gyw_A          119 SIHKDSGNIPEAIASYRTALKLKPDFPD  146 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            9999999999999999999999998875

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.87  E-value=1.5e-21  Score=172.83  Aligned_cols=168  Identities=11%  Similarity=0.050  Sum_probs=149.5

Q ss_pred             hhHHHHHhhcCCcCC-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159          32 YPEIDRLLYYGKKDD-KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP  110 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P  110 (259)
                      ...+..+.  .. |+ +++|+..+++++..+|+++.+|+.+|.++..+|++.              +|+..++++|+++|
T Consensus       135 ~~~g~~l~--~~-g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~--------------eAl~~~~kal~ldP  197 (382)
T 2h6f_A          135 HFRRVLLK--SL-QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS--------------QELEFIADILNQDA  197 (382)
T ss_dssp             HHHHHHHH--HT-TCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCT--------------THHHHHHHHHHHCT
T ss_pred             HHHHHHHH--Hc-ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHH--------------HHHHHHHHHHHhCc
Confidence            44555555  45 86 999999999999999999999999999999999986              99999999999999


Q ss_pred             CChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCC
Q psy9159         111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDE  190 (259)
Q Consensus       111 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (259)
                      +++.+|.++|.++..+|++.          .++..++++|+++|+++.+|+.+|.++..++                   
T Consensus       198 ~~~~a~~~lg~~~~~~g~~~----------eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~-------------------  248 (382)
T 2h6f_A          198 KNYHAWQHRQWVIQEFKLWD----------NELQYVDQLLKEDVRNNSVWNQRYFVISNTT-------------------  248 (382)
T ss_dssp             TCHHHHHHHHHHHHHHTCCT----------THHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-------------------
T ss_pred             cCHHHHHHHHHHHHHcCChH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-------------------
Confidence            99999999999999999987          4678999999999999999999999988742                   


Q ss_pred             CcHHHH-----HHHHHHHHhhCCCCcHHhHHHHHHHHHHhC--CHHHHHHHHHHHhcCCCCCcc
Q psy9159         191 PTAEDA-----IANCLKAEELAPAPWKENQLLIAKCYIEAG--EYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       191 g~~~eA-----i~~~~kAi~l~P~~~~~~~~~la~~~~~~g--~~~eA~~~~~kal~l~p~~~~  247 (259)
                      |.+++|     +.+|++|++++| ++..+|+++|.++...|  ++++|++.++++ +.+|+++.
T Consensus       249 ~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~  310 (382)
T 2h6f_A          249 GYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPY  310 (382)
T ss_dssp             CSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHH
Confidence            333555     699999999999 78999999999999988  699999999998 77776653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.87  E-value=2.8e-20  Score=158.19  Aligned_cols=203  Identities=14%  Similarity=0.100  Sum_probs=137.8

Q ss_pred             HHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhh-chhcc-----------cCc---------HHHHH
Q psy9159          34 EIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLY-DIKRR-----------END---------KEASE   92 (259)
Q Consensus        34 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g-~~~~~-----------~~~---------~~~~~   92 (259)
                      .+..++  .. |++++|+..++++++.+|+++.+++.+|.++...| ++.+.           +..         .-...
T Consensus        62 ~~~~~~--~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  138 (330)
T 3hym_B           62 HIGTLV--EL-NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE  138 (330)
T ss_dssp             HHHHHH--HH-TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH
T ss_pred             HHHHHH--Hh-hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc
Confidence            444444  34 66666666666666666666666666666666666 44300           000         00011


Q ss_pred             HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhc
Q psy9159          93 KYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISK  172 (259)
Q Consensus        93 ~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~  172 (259)
                      +.+++|+..+++++++.|++..++..+|.++...|++.          .+...++++++++|+++.++..+|.++...++
T Consensus       139 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~  208 (330)
T 3hym_B          139 SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK----------LAERFFSQALSIAPEDPFVMHEVGVVAFQNGE  208 (330)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH----------HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHccc
Confidence            12235555555555555555555555555555555444          56789999999999999999999999998877


Q ss_pred             cchHHHHHHHHHhc-----------C------------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHH
Q psy9159         173 LSFFERKIAVLIVS-----------D------------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYA  229 (259)
Q Consensus       173 ~~~~~~~~~~~~~~-----------~------------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~  229 (259)
                      .......+..++..           .            ...|++++|+.+|+++++++| ++..++..+|.++..+|+++
T Consensus       209 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~  287 (330)
T 3hym_B          209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFE  287 (330)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHH
Confidence            65433332221110           0            116999999999999999999 77899999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCccchh
Q psy9159         230 KAVQWLDKAKAIPVVSYESHD  250 (259)
Q Consensus       230 eA~~~~~kal~l~p~~~~~~~  250 (259)
                      +|+++++++++++|+++....
T Consensus       288 ~A~~~~~~al~~~p~~~~~~~  308 (330)
T 3hym_B          288 NAVDYFHTALGLRRDDTFSVT  308 (330)
T ss_dssp             HHHHHHHTTTTTCSCCHHHHH
T ss_pred             HHHHHHHHHHccCCCchHHHH
Confidence            999999999999998875433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.87  E-value=4.1e-20  Score=160.02  Aligned_cols=198  Identities=16%  Similarity=0.115  Sum_probs=165.7

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA  109 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~  109 (259)
                      ..+..+..++  .. |++++|+..++++++.+|+++.+++.+|.++...|++.              +|+..++++++++
T Consensus        66 ~~~~~~~~~~--~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--------------~A~~~~~~al~~~  128 (368)
T 1fch_A           66 QPFEEGLRRL--QE-GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL--------------LAISALRRCLELK  128 (368)
T ss_dssp             SHHHHHHHHH--HT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHH--HC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH--------------HHHHHHHHHHhcC
Confidence            3566777777  66 99999999999999999999999999999999999875              9999999999999


Q ss_pred             CCChHHHHHHHHHHHHhhchhhHHHHH---------------------------------------hcHHHHHHHHHHHH
Q psy9159         110 PNNSNTQKWYGICVGANGQFQSLKEKI---------------------------------------KCGVVFRDQMNKAI  150 (259)
Q Consensus       110 P~~~~~~~~la~~~~~~~~~~~~~~~~---------------------------------------~~~~~a~~~~~kAl  150 (259)
                      |+++.++..+|.++...|++..+...+                                       +....+...+++++
T Consensus       129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  208 (368)
T 1fch_A          129 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV  208 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence            999999999999999998876554322                                       22346778899999


Q ss_pred             ccCCC--ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC--------------CCCcHHHHHHHHHHHHhhCCCCcHHh
Q psy9159         151 QMAPK--DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL--------------DEPTAEDAIANCLKAEELAPAPWKEN  214 (259)
Q Consensus       151 ~l~P~--~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~eAi~~~~kAi~l~P~~~~~~  214 (259)
                      +++|+  ++.++..+|.++...++.+.....+..++...+              ..|++++|+.+|+++++++| +...+
T Consensus       209 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~  287 (368)
T 1fch_A          209 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRS  287 (368)
T ss_dssp             HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred             HhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHH
Confidence            99999  889999999999988776543333322211111              16999999999999999999 77899


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159         215 QLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       215 ~~~la~~~~~~g~~~eA~~~~~kal~l~p~~  245 (259)
                      +..+|.+|..+|++++|++.|++++++.|.+
T Consensus       288 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          288 RYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999998877

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.87  E-value=8.7e-22  Score=151.63  Aligned_cols=140  Identities=10%  Similarity=0.060  Sum_probs=127.0

Q ss_pred             CcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy9159          43 KKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGIC  122 (259)
Q Consensus        43 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~  122 (259)
                      ..|++++|++.+++++..+|+++.+++.+|.+|...|++.              +|++.++++++++|+++.+|..+|.+
T Consensus         9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~--------------~A~~~~~~al~~~p~~~~a~~~lg~~   74 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYD--------------LAKKYICTYINVQERDPKAHRFLGLL   74 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3489999999999999999999999999999999999875              99999999999999999999999999


Q ss_pred             HHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHH-HH
Q psy9159         123 VGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIAN-CL  201 (259)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~-~~  201 (259)
                      +...|++.          .|...|+++++++|+++.+|+.+|.++...                    |++++|+.+ ++
T Consensus        75 ~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------------~~~~~aa~~~~~  124 (150)
T 4ga2_A           75 YELEENTD----------KAVECYRRSVELNPTQKDLVLKIAELLCKN--------------------DVTDGRAKYWVE  124 (150)
T ss_dssp             HHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------------CSSSSHHHHHHH
T ss_pred             HHHcCchH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------------CChHHHHHHHHH
Confidence            99999887          567899999999999999999999999876                    677777765 58


Q ss_pred             HHHhhCCCCcHHhHHHHHHHHHHhCC
Q psy9159         202 KAEELAPAPWKENQLLIAKCYIEAGE  227 (259)
Q Consensus       202 kAi~l~P~~~~~~~~~la~~~~~~g~  227 (259)
                      +|++++| +++.++..++.++...|+
T Consensus       125 ~al~l~P-~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          125 RAAKLFP-GSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred             HHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence            9999999 788999999999888775

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.86  E-value=2.1e-20  Score=152.52  Aligned_cols=192  Identities=15%  Similarity=0.133  Sum_probs=114.3

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      +..+..++  .. |++++|+..++++++.+|+++.+++.+|.++...|++.              +|+..++++++++|+
T Consensus        27 ~~~a~~~~--~~-~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~--------------~A~~~~~~~~~~~~~   89 (243)
T 2q7f_A           27 GQQMGRGS--EF-GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELE--------------RALAFYDKALELDSS   89 (243)
T ss_dssp             ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHH--Hh-hCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHcCCc
Confidence            44444444  44 66666666666666666666666666666666666654              555566666666666


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcC----
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSD----  187 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~----  187 (259)
                      ++.++..+|.++...|++.          .+...++++++++|+++.++..+|.++...++.......+..++...    
T Consensus        90 ~~~~~~~la~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~  159 (243)
T 2q7f_A           90 AATAYYGAGNVYVVKEMYK----------EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT  159 (243)
T ss_dssp             CHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred             chHHHHHHHHHHHHhccHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccH
Confidence            5555555555555555554          23444455555555555555555555444443322111111100000    


Q ss_pred             ----------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159         188 ----------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL  251 (259)
Q Consensus       188 ----------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~  251 (259)
                                ...|++++|+.+|+++++.+| ++..++..+|.++..+|++++|+++++++++++|+++.....
T Consensus       160 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  232 (243)
T 2q7f_A          160 EARFQFGMCLANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA  232 (243)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence                      003889999999999999999 778899999999999999999999999999999888754433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.86  E-value=8.4e-21  Score=172.38  Aligned_cols=185  Identities=15%  Similarity=0.050  Sum_probs=152.2

Q ss_pred             hhHHHHHhhcCCcCCH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159          32 YPEIDRLLYYGKKDDK-AKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP  110 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P  110 (259)
                      +..+..++  .. |++ ++|+..|+++++.+|+++++++.+|.+|...|++.              +|+..++++++++|
T Consensus       106 ~~lg~~~~--~~-g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~--------------~A~~~~~~al~~~p  168 (474)
T 4abn_A          106 MLKGKALN--VT-PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVT--------------SAHTCFSGALTHCK  168 (474)
T ss_dssp             HHHHHHHT--SS-SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHTTCC
T ss_pred             HHHHHHHH--hc-cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHhhCC
Confidence            44454555  55 999 99999999999999999999999999999999875              99999999999999


Q ss_pred             CChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCC
Q psy9159         111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDE  190 (259)
Q Consensus       111 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (259)
                      + +.++..+|.++..... .......+...+|...++++++++|+++.+|+.+|.++...-            +......
T Consensus       169 ~-~~~~~~lg~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~------------~~~~~~~  234 (474)
T 4abn_A          169 N-KVSLQNLSMVLRQLQT-DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLY------------FNTGQNP  234 (474)
T ss_dssp             C-HHHHHHHHHHHTTCCC-SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------------HHTTCCH
T ss_pred             C-HHHHHHHHHHHHHhcc-CChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH------------Hhhcccc
Confidence            9 7999999999988710 001111122236789999999999999999999999987640            0000012


Q ss_pred             CcHHHHHHHHHHHHhhCCC--CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         191 PTAEDAIANCLKAEELAPA--PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~--~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      |++++|+.+|++|++++|.  +++.+|+++|.+|..+|++++|++.|+++++++|++++
T Consensus       235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  293 (474)
T 4abn_A          235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE  293 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            6799999999999999992  25889999999999999999999999999999998875

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.86  E-value=2.8e-20  Score=146.60  Aligned_cols=141  Identities=18%  Similarity=0.165  Sum_probs=130.7

Q ss_pred             CCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHH
Q psy9159          62 PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVV  141 (259)
Q Consensus        62 p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~  141 (259)
                      .+++++|+++|.+|...|++.              +|+..|+++++++|+++.++..+|.++...|++.          .
T Consensus         2 ge~~~iy~~lG~~~~~~g~~~--------------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~----------~   57 (184)
T 3vtx_A            2 GETTTIYMDIGDKKRTKGDFD--------------GAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPN----------D   57 (184)
T ss_dssp             --CHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------H
T ss_pred             CcHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH----------H
Confidence            367899999999999999975              9999999999999999999999999999999887          4


Q ss_pred             HHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHH
Q psy9159         142 FRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC  221 (259)
Q Consensus       142 a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~  221 (259)
                      +...+++++..+|+++.++..+|.++...                    +++++|+..+.++++++| .+..++..+|.+
T Consensus        58 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~  116 (184)
T 3vtx_A           58 AIESLKKFVVLDTTSAEAYYILGSANFMI--------------------DEKQAAIDALQRAIALNT-VYADAYYKLGLV  116 (184)
T ss_dssp             HHHHHHHHHHHCCCCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCc-cchHHHHHHHHH
Confidence            67889999999999999999999988774                    789999999999999999 789999999999


Q ss_pred             HHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         222 YIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       222 ~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      |..+|++++|++.|+++++++|.+++
T Consensus       117 ~~~~g~~~~A~~~~~~~l~~~p~~~~  142 (184)
T 3vtx_A          117 YDSMGEHDKAIEAYEKTISIKPGFIR  142 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHhCCchhHHHHHHHHHHhcchhhh
Confidence            99999999999999999999998764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.86  E-value=4.6e-20  Score=156.84  Aligned_cols=191  Identities=15%  Similarity=-0.002  Sum_probs=157.7

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      +..+..+..++  .. |++++|+..++++++.+|.++.++..++.++...|++.              +|+..++++++.
T Consensus        23 ~~~~~~a~~~~--~~-g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~--------------~A~~~~~~~~~~   85 (330)
T 3hym_B           23 DVVVSLAERHY--YN-CDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN--------------ELFYLSHKLVDL   85 (330)
T ss_dssp             TTHHHHHHHHH--HT-TCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHH--------------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--Hc-CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHH--------------HHHHHHHHHHHh
Confidence            44567777777  67 99999999999999999999999999999999999875              999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhh-chhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcC
Q psy9159         109 APNNSNTQKWYGICVGANG-QFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSD  187 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~-~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~  187 (259)
                      +|+++.++..+|.++...| ++.          .+...++++++++|+++.+|..+|.++...++.......+..++...
T Consensus        86 ~~~~~~~~~~l~~~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  155 (330)
T 3hym_B           86 YPSNPVSWFAVGCYYLMVGHKNE----------HARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM  155 (330)
T ss_dssp             CTTSTHHHHHHHHHHHHSCSCHH----------HHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred             CcCCHHHHHHHHHHHHHhhhhHH----------HHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence            9999999999999999888 665          46788899999999999999999999988876543332222211111


Q ss_pred             C--------------CCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         188 L--------------DEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       188 ~--------------~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      +              ..|++++|+.+|+++++++| ++..++..+|.++...|++++|++.+++++++.|...+
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  228 (330)
T 3hym_B          156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN  228 (330)
T ss_dssp             TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc
Confidence            1              15889999999999999999 67888899999999999999999999999888766443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.86  E-value=5.1e-20  Score=148.10  Aligned_cols=167  Identities=14%  Similarity=0.087  Sum_probs=137.3

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      ...+..++  .. |++++|+..++++++.+|+++.++..+|.++...|++.              +|+..++++++++|+
T Consensus        12 ~~~~~~~~--~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------~A~~~~~~a~~~~~~   74 (225)
T 2vq2_A           12 TQLAMEYM--RG-QDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVND--------------KAQESFRQALSIKPD   74 (225)
T ss_dssp             HHHHHHHH--HT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHH--HH-hhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChH--------------HHHHHHHHHHHhCCC
Confidence            44455566  56 99999999999999999999999999999999998875              999999999999999


Q ss_pred             ChHHHHHHHHHHHHh-hchhhHHHHHhcHHHHHHHHHHHHc--cCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC
Q psy9159         112 NSNTQKWYGICVGAN-GQFQSLKEKIKCGVVFRDQMNKAIQ--MAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL  188 (259)
Q Consensus       112 ~~~~~~~la~~~~~~-~~~~~~~~~~~~~~~a~~~~~kAl~--l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~  188 (259)
                      ++.++..+|.++... |++.          .+...++++++  .+|.++.+++.+|.++...                  
T Consensus        75 ~~~~~~~l~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------  126 (225)
T 2vq2_A           75 SAEINNNYGWFLCGRLNRPA----------ESMAYFDKALADPTYPTPYIANLNKGICSAKQ------------------  126 (225)
T ss_dssp             CHHHHHHHHHHHHTTTCCHH----------HHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT------------------
T ss_pred             ChHHHHHHHHHHHHhcCcHH----------HHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc------------------
Confidence            999999999999888 8876          45678888888  6677778888899888774                  


Q ss_pred             CCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC-CCc
Q psy9159         189 DEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV-VSY  246 (259)
Q Consensus       189 ~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p-~~~  246 (259)
                        |++++|+.+|+++++.+| .+..++..+|.++...|++++|++.+++++++.| .++
T Consensus       127 --~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  182 (225)
T 2vq2_A          127 --GQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA  182 (225)
T ss_dssp             --TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCH
T ss_pred             --CCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence              667788888888887777 5677777778888888888888888888777776 544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.86  E-value=7e-20  Score=149.82  Aligned_cols=200  Identities=15%  Similarity=0.095  Sum_probs=149.9

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP---DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME  107 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~  107 (259)
                      .+..+..++  .. |++++|+..|+++++.+|+++   ++++.+|.+|...|++.              +|+..++++++
T Consensus         7 ~~~~a~~~~--~~-g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~--------------~A~~~~~~~l~   69 (225)
T 2yhc_A            7 IYATAQQKL--QD-GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLP--------------LAQAAIDRFIR   69 (225)
T ss_dssp             HHHHHHHHH--HH-TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHH
T ss_pred             HHHHHHHHH--Hc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHH--------------HHHHHHHHHHH
Confidence            456677777  56 999999999999999999874   79999999999999875              99999999999


Q ss_pred             hCCCChH---HHHHHHHHHHHhhch--------hhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchH
Q psy9159         108 LAPNNSN---TQKWYGICVGANGQF--------QSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFF  176 (259)
Q Consensus       108 ~~P~~~~---~~~~la~~~~~~~~~--------~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~  176 (259)
                      ++|+++.   +++++|.++...+..        .......+...+|...++++++.+|+++.++..+.++......+...
T Consensus        70 ~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~  149 (225)
T 2yhc_A           70 LNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY  149 (225)
T ss_dssp             HCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence            9999986   788899888764311        00000112344788999999999999997764333221111111111


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcH---HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159         177 ERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWK---ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL  251 (259)
Q Consensus       177 ~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~---~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~  251 (259)
                      ...++..++.   .|++++|+..|+++++..| +++   .++..+|.+|..+|++++|++.++++....|.+.+.+-+
T Consensus       150 ~~~~a~~~~~---~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~~~  223 (225)
T 2yhc_A          150 EYSVAEYYTE---RGAWVAVVNRVEGMLRDYP-DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEHHHH  223 (225)
T ss_dssp             HHHHHHHHHH---HTCHHHHHHHHHHHHHHST-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCCTTC
T ss_pred             HHHHHHHHHH---cCcHHHHHHHHHHHHHHCc-CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhhccc
Confidence            1111111111   3899999999999999999 554   679999999999999999999999999999998876543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.86  E-value=2.6e-20  Score=161.77  Aligned_cols=200  Identities=13%  Similarity=0.066  Sum_probs=143.3

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------c---------------
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------E---------------   85 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~---------------   85 (259)
                      ...+..+.  .. |++++|+..++++++.+|+++.++..+|.+|...|++.+.           +               
T Consensus       103 ~~lg~~~~--~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  179 (365)
T 4eqf_A          103 QFLGITQA--EN-ENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGL  179 (365)
T ss_dssp             HHHHHHHH--HT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------
T ss_pred             HHHHHHHH--HC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHH
Confidence            34444555  56 9999999999999999999999999999999999987631           0               


Q ss_pred             ----CcHHHHHHHHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhH
Q psy9159          86 ----NDKEASEKYILQGIEYAKKAMELAPN--NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTL  159 (259)
Q Consensus        86 ----~~~~~~~~~~~~A~~~~~kal~~~P~--~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~  159 (259)
                          +..-...+.+++|+..++++++++|+  ++.++..+|.++...|++.          .|...++++++++|+++.+
T Consensus       180 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~  249 (365)
T 4eqf_A          180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN----------RAIDAFNAALTVRPEDYSL  249 (365)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCHHH
Confidence                00112356789999999999999999  8999999999999998887          4567788888888888888


Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHhcCC--------------CCCcHHHHHHHHHHHHhhCCCCcHHh-----HHHHHH
Q psy9159         160 YSLKGRYQYEISKLSFFERKIAVLIVSDL--------------DEPTAEDAIANCLKAEELAPAPWKEN-----QLLIAK  220 (259)
Q Consensus       160 ~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~eAi~~~~kAi~l~P~~~~~~-----~~~la~  220 (259)
                      |..+|.++...++.......+..++...|              ..|++++|+.+|+++++++| .....     ....+.
T Consensus       250 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~  328 (365)
T 4eqf_A          250 WNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR-KSRNQQQVPHPAISGN  328 (365)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-CC------------CH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccCCCcccchhhhHHH
Confidence            88888888777765433322222111111              14999999999999999999 43221     122356


Q ss_pred             HHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159         221 CYIEAGEYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       221 ~~~~~g~~~eA~~~~~kal~l~p~~  245 (259)
                      ++..+++.-....-.+.+......+
T Consensus       329 ~~~~l~~~~~~~g~~~~a~~~~~~~  353 (365)
T 4eqf_A          329 IWAALRIALSLMDQPELFQAANLGD  353 (365)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHhh
Confidence            6766666666666555555554443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.86  E-value=3.8e-21  Score=181.99  Aligned_cols=159  Identities=8%  Similarity=-0.030  Sum_probs=149.4

Q ss_pred             CCcCCHHHHHHHHHHHh--------hcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh
Q psy9159          42 GKKDDKAKAYNLTMELN--------NKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS  113 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~--------~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~  113 (259)
                      .. |++++|++.+++++        +.+|+++++++.+|.++..+|++.              +|+..++++++++|+++
T Consensus       403 ~~-~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~--------------~A~~~~~~al~~~p~~~  467 (681)
T 2pzi_A          403 VL-SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVA--------------KATRKLDDLAERVGWRW  467 (681)
T ss_dssp             TT-CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHHHCCCH
T ss_pred             cc-cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHH--------------HHHHHHHHHhccCcchH
Confidence            45 99999999999999        999999999999999999999975              99999999999999999


Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcH
Q psy9159         114 NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTA  193 (259)
Q Consensus       114 ~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  193 (259)
                      .+|+.+|.++...|++.          +|...|++|++++|+++.+|+.+|.++...                    |++
T Consensus       468 ~a~~~lg~~~~~~g~~~----------~A~~~~~~al~l~P~~~~~~~~lg~~~~~~--------------------g~~  517 (681)
T 2pzi_A          468 RLVWYRAVAELLTGDYD----------SATKHFTEVLDTFPGELAPKLALAATAELA--------------------GNT  517 (681)
T ss_dssp             HHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHSTTCSHHHHHHHHHHHHH--------------------TCC
T ss_pred             HHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHc--------------------CCh
Confidence            99999999999999987          578999999999999999999999999886                    778


Q ss_pred             HHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         194 EDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       194 ~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      ++ +.+|++|++++| ++..+++++|.++..+|++++|++.|+++++++|++.+
T Consensus       518 ~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~  569 (681)
T 2pzi_A          518 DE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTT  569 (681)
T ss_dssp             CT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHH
T ss_pred             HH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHH
Confidence            99 999999999999 78999999999999999999999999999999988764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.86  E-value=1.6e-19  Score=154.86  Aligned_cols=189  Identities=11%  Similarity=0.037  Sum_probs=152.4

Q ss_pred             HHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChH
Q psy9159          35 IDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSN  114 (259)
Q Consensus        35 ~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~  114 (259)
                      +..+.  .. |++++|+..++++++.+|+++.++..+|.++...|++.              +|+..++++++++|+++.
T Consensus       127 a~~~~--~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~A~~~~~~~~~~~~~~~~  189 (359)
T 3ieg_A          127 ALDAF--DG-ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR--------------KAISDLKAASKLKSDNTE  189 (359)
T ss_dssp             HHHHH--HT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHTTCSCCHH
T ss_pred             HHHHH--Hc-cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCCCCHH
Confidence            44555  56 99999999999999999999999999999999999875              999999999999999999


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHH------------HHHHHHhhccchHHHHHHH
Q psy9159         115 TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLK------------GRYQYEISKLSFFERKIAV  182 (259)
Q Consensus       115 ~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~l------------G~~~~~~~~~~~~~~~~~~  182 (259)
                      ++..+|.++...|++.          .+...++++++++|+++.++..+            |.++...++.+.....+..
T Consensus       190 ~~~~la~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  259 (359)
T 3ieg_A          190 AFYKISTLYYQLGDHE----------LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES  259 (359)
T ss_dssp             HHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHH----------HHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999998877          45677778888888877765533            5556555554322211111


Q ss_pred             HHhc------------------CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         183 LIVS------------------DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       183 ~~~~------------------~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      ++-.                  ....|++++|+.+|+++++++| +++.++..+|.++...|++++|++.|+++++++|+
T Consensus       260 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~  338 (359)
T 3ieg_A          260 VMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN  338 (359)
T ss_dssp             HHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            0000                  0115999999999999999999 77999999999999999999999999999999998


Q ss_pred             Cccchhh
Q psy9159         245 SYESHDL  251 (259)
Q Consensus       245 ~~~~~~~  251 (259)
                      +.+-...
T Consensus       339 ~~~~~~~  345 (359)
T 3ieg_A          339 DQQIREG  345 (359)
T ss_dssp             CHHHHHH
T ss_pred             ChHHHHH
Confidence            8764443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.1e-20  Score=152.49  Aligned_cols=193  Identities=18%  Similarity=0.115  Sum_probs=154.2

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP  110 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P  110 (259)
                      ....+..++  .. |++++|+..++++++.+ +++.+++.+|.++..+|++.              +|+..++++++++|
T Consensus         8 ~~~~g~~~~--~~-~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~--------------~A~~~~~~a~~~~~   69 (258)
T 3uq3_A            8 EKAEGNKFY--KA-RQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYE--------------TAISTLNDAVEQGR   69 (258)
T ss_dssp             HHHHHHHHH--HT-TCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--Hh-ccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHH--------------HHHHHHHHHHHhCc
Confidence            455666777  66 99999999999999999 99999999999999999875              99999999999999


Q ss_pred             CC-------hHHHHHHHHHHHHhhchhhHHHHHhc----------------HHHHHHHHHHHHccCCCChhHHHHHHHHH
Q psy9159         111 NN-------SNTQKWYGICVGANGQFQSLKEKIKC----------------GVVFRDQMNKAIQMAPKDFTLYSLKGRYQ  167 (259)
Q Consensus       111 ~~-------~~~~~~la~~~~~~~~~~~~~~~~~~----------------~~~a~~~~~kAl~l~P~~~~~~~~lG~~~  167 (259)
                      ++       +.++..+|.++...|++..+......                ...+...+++++..+|+++.++..+|.++
T Consensus        70 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  149 (258)
T 3uq3_A           70 EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEY  149 (258)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence            88       78999999999999988765443222                22455667777778888888888888888


Q ss_pred             HHhhccchHHHHHHHHHhcC--------------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHH
Q psy9159         168 YEISKLSFFERKIAVLIVSD--------------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQ  233 (259)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~--------------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~  233 (259)
                      ...++.+.....+..++-..              ...|++++|+.+|+++++++| +++.++..+|.++..+|++++|++
T Consensus       150 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~  228 (258)
T 3uq3_A          150 FTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALE  228 (258)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHH
Confidence            88766543322222111111              115889999999999999999 678889999999999999999999


Q ss_pred             HHHHHhcCC
Q psy9159         234 WLDKAKAIP  242 (259)
Q Consensus       234 ~~~kal~l~  242 (259)
                      .++++++++
T Consensus       229 ~~~~a~~~~  237 (258)
T 3uq3_A          229 TLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhC
Confidence            999999988

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.85  E-value=9e-21  Score=149.23  Aligned_cols=164  Identities=10%  Similarity=0.032  Sum_probs=140.9

Q ss_pred             cCCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH
Q psy9159          28 NNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME  107 (259)
Q Consensus        28 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~  107 (259)
                      .+..+..+..++  .. |++++|+..++++++.+|+++++++.+|.++...|++.              +|+..++++++
T Consensus         6 ~~~~~~~a~~~~--~~-g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~--------------~A~~~~~~a~~   68 (176)
T 2r5s_A            6 DEQLLKQVSELL--QQ-GEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFE--------------LAQELLATIPL   68 (176)
T ss_dssp             CTTHHHHHHHHH--HT-TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHH--------------HHHHHHTTCCG
T ss_pred             HHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHH--------------HHHHHHHHhhh
Confidence            345678888888  67 99999999999999999999999999999999999875              99999999999


Q ss_pred             hCCCChHHHHHHHHHHH-HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhc
Q psy9159         108 LAPNNSNTQKWYGICVG-ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVS  186 (259)
Q Consensus       108 ~~P~~~~~~~~la~~~~-~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~  186 (259)
                      ++| ++..+...+.+.. ..+...          .+...++++++++|+++.+++.+|.++...                
T Consensus        69 ~~p-~~~~~~~~~~~~~~~~~~~~----------~a~~~~~~al~~~P~~~~~~~~la~~~~~~----------------  121 (176)
T 2r5s_A           69 EYQ-DNSYKSLIAKLELHQQAAES----------PELKRLEQELAANPDNFELACELAVQYNQV----------------  121 (176)
T ss_dssp             GGC-CHHHHHHHHHHHHHHHHTSC----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHT----------------
T ss_pred             ccC-ChHHHHHHHHHHHHhhcccc----------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------------
Confidence            999 8876655554322 111111          246889999999999999999999999875                


Q ss_pred             CCCCCcHHHHHHHHHHHHhhCCCCc--HHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         187 DLDEPTAEDAIANCLKAEELAPAPW--KENQLLIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       187 ~~~~g~~~eAi~~~~kAi~l~P~~~--~~~~~~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                          |++++|+.+|+++++++| ++  ..++..+|.++..+|+.++|+..|++++.
T Consensus       122 ----g~~~~A~~~~~~~l~~~p-~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          122 ----GRDEEALELLWNILKVNL-GAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             ----TCHHHHHHHHHHHHTTCT-TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             ----ccHHHHHHHHHHHHHhCc-ccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence                889999999999999999 54  45899999999999999999999999975

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.85  E-value=1.9e-20  Score=152.85  Aligned_cols=159  Identities=11%  Similarity=0.026  Sum_probs=115.4

Q ss_pred             CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHH
Q psy9159          64 DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFR  143 (259)
Q Consensus        64 ~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~  143 (259)
                      .+..++.+|.++...|++.              +|+..++++++.+|+++.++..+|.++...|++.          .+.
T Consensus        22 ~~~~~~~~a~~~~~~~~~~--------------~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~----------~A~   77 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYE--------------KAAEAFTKAIEENKEDAIPYINFANLLSSVNELE----------RAL   77 (243)
T ss_dssp             ----------------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHH----------HHH
T ss_pred             HHHHHHHHHHHHHHhhCHH--------------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH----------HHH
Confidence            4678889999999999875              9999999999999999999999999999999887          567


Q ss_pred             HHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcC--------------CCCCcHHHHHHHHHHHHhhCCC
Q psy9159         144 DQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSD--------------LDEPTAEDAIANCLKAEELAPA  209 (259)
Q Consensus       144 ~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~--------------~~~g~~~eAi~~~~kAi~l~P~  209 (259)
                      ..++++++++|+++.++..+|.++...++.....+.+..++...              ...|++++|+.+++++++++| 
T Consensus        78 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-  156 (243)
T 2q7f_A           78 AFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-  156 (243)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-
Confidence            89999999999999999999999998877543332222211111              125889999999999999999 


Q ss_pred             CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         210 PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       210 ~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      ++..++..+|.++...|++++|++.++++++.+|.+++
T Consensus       157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  194 (243)
T 2q7f_A          157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD  194 (243)
T ss_dssp             TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            67888899999999999999999999999998876653

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.85  E-value=1.8e-20  Score=155.85  Aligned_cols=186  Identities=17%  Similarity=0.160  Sum_probs=113.2

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      +..+..+..++  .. |++++|+..++++++.+|+++.+++.+|.+|...|++.              +|+..++++++ 
T Consensus         4 ~~~~~~a~~~~--~~-~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~--------------~A~~~~~~a~~-   65 (272)
T 3u4t_A            4 DVEFRYADFLF--KN-NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYD--------------LAQKDIETYFS-   65 (272)
T ss_dssp             -CHHHHHHHHH--TT-TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHH--------------HHHHHHHHHHT-
T ss_pred             HHHHHHHHHHH--Hh-cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH--------------HHHHHHHHHHh-
Confidence            34567777777  66 89999999999999999999989999999998888865              55555555555 


Q ss_pred             CCCChHH----HHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHH----
Q psy9159         109 APNNSNT----QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKI----  180 (259)
Q Consensus       109 ~P~~~~~----~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~----  180 (259)
                      .|+++..    +..+|.++...|++.          .|...++++++++|+++.++..+|.++...+++......+    
T Consensus        66 ~~~~~~~~~~~~~~lg~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  135 (272)
T 3u4t_A           66 KVNATKAKSADFEYYGKILMKKGQDS----------LAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI  135 (272)
T ss_dssp             TSCTTTCCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred             ccCchhHHHHHHHHHHHHHHHcccHH----------HHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            3333332    455555555555544          3445555555555555555555555555442211100000    


Q ss_pred             -------------HHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCC---HHHHHHHHHHHhcCCCC
Q psy9159         181 -------------AVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGE---YAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       181 -------------~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~---~~eA~~~~~kal~l~p~  244 (259)
                                   +...+.   .+++++|+.+|+++++++| ++..++..+|.++..+|+   +++|+..+++++++...
T Consensus       136 ~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~  211 (272)
T 3u4t_A          136 RPTTTDPKVFYELGQAYYY---NKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP  211 (272)
T ss_dssp             CSSCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG
T ss_pred             hcCCCcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc
Confidence                         000000   1466777777777777777 556666777777777776   66677777777766543


Q ss_pred             Cc
Q psy9159         245 SY  246 (259)
Q Consensus       245 ~~  246 (259)
                      .+
T Consensus       212 ~~  213 (272)
T 3u4t_A          212 GG  213 (272)
T ss_dssp             GG
T ss_pred             cc
Confidence            33

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.85  E-value=3.3e-19  Score=151.29  Aligned_cols=200  Identities=14%  Similarity=0.071  Sum_probs=166.2

Q ss_pred             cCCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH
Q psy9159          28 NNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME  107 (259)
Q Consensus        28 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~  107 (259)
                      .+..+..+..++  .. |++++|+..++++++.+|+++.++..+|.++...|++.              +|+..++++++
T Consensus        21 ~~~~~~~a~~~~--~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------~A~~~~~~a~~   83 (327)
T 3cv0_A           21 HENPMEEGLSML--KL-ANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDG--------------LAIIALNHARM   83 (327)
T ss_dssp             SSCHHHHHHHHH--HT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH--Hh-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHh
Confidence            345677888887  67 99999999999999999999999999999999999875              99999999999


Q ss_pred             hCCCChHHHHHHHHHHHHhhchhhHHHHH---------------------------------------hcHHHHHHHHHH
Q psy9159         108 LAPNNSNTQKWYGICVGANGQFQSLKEKI---------------------------------------KCGVVFRDQMNK  148 (259)
Q Consensus       108 ~~P~~~~~~~~la~~~~~~~~~~~~~~~~---------------------------------------~~~~~a~~~~~k  148 (259)
                      ++|+++.++..+|.++...|++..+....                                       +....+...+++
T Consensus        84 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  163 (327)
T 3cv0_A           84 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA  163 (327)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHH
T ss_pred             cCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence            99999999999999999988876554321                                       112456788999


Q ss_pred             HHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC--------------CCCcHHHHHHHHHHHHhhCCCCcHHh
Q psy9159         149 AIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL--------------DEPTAEDAIANCLKAEELAPAPWKEN  214 (259)
Q Consensus       149 Al~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~eAi~~~~kAi~l~P~~~~~~  214 (259)
                      +++++|+++.++..+|.++...++.+...+.+..++...+              ..|++++|+.+|+++++++| ++..+
T Consensus       164 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~  242 (327)
T 3cv0_A          164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRV  242 (327)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred             HHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHH
Confidence            9999999999999999999888776443333222111111              15899999999999999999 77889


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159         215 QLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       215 ~~~la~~~~~~g~~~eA~~~~~kal~l~p~~  245 (259)
                      +..+|.++..+|++++|++.+++++++.|.+
T Consensus       243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  273 (327)
T 3cv0_A          243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG  273 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999999999999999884

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.85  E-value=1.1e-19  Score=155.92  Aligned_cols=190  Identities=14%  Similarity=0.105  Sum_probs=152.9

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP  110 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P  110 (259)
                      .+..+..++  .. |++++|+..++++++.+|+++.+++.+|.++...|++.              +|+..++++++++|
T Consensus         6 ~~~~~~~~~--~~-g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~--------------~A~~~~~~~~~~~~   68 (359)
T 3ieg_A            6 HLELGKKLL--AA-GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSK--------------AALPDLTKVIALKM   68 (359)
T ss_dssp             HHHHHHHHH--HT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHHCT
T ss_pred             HHHHHHHHH--Hc-CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHH--------------HHHHHHHHHHHhCC
Confidence            456677777  67 99999999999999999999999999999999999875              99999999999999


Q ss_pred             CChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCC---CChhHHHHHH------------HHHHHhhccch
Q psy9159         111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAP---KDFTLYSLKG------------RYQYEISKLSF  175 (259)
Q Consensus       111 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P---~~~~~~~~lG------------~~~~~~~~~~~  175 (259)
                      +++.++..+|.++...|++.          .+...++++++++|   +++.++..+|            .++...++...
T Consensus        69 ~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  138 (359)
T 3ieg_A           69 DFTAARLQRGHLLLKQGKLD----------EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA  138 (359)
T ss_dssp             TCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcchHHHHHHHHHHHcCChH----------HHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence            99999999999999999887          56789999999999   9999998884            55555555432


Q ss_pred             HHHHHHHHHhcC--------------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         176 FERKIAVLIVSD--------------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       176 ~~~~~~~~~~~~--------------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                      ....+..++-..              ...|++++|+.+++++++++| .++.++..+|.++...|++++|++.+++++++
T Consensus       139 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  217 (359)
T 3ieg_A          139 AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL  217 (359)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            222221111111              115788888888888888888 66778888888888888888888888888888


Q ss_pred             CCCCccc
Q psy9159         242 PVVSYES  248 (259)
Q Consensus       242 ~p~~~~~  248 (259)
                      +|.+...
T Consensus       218 ~~~~~~~  224 (359)
T 3ieg_A          218 DQDHKRC  224 (359)
T ss_dssp             CTTCHHH
T ss_pred             CccchHH
Confidence            8776653

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.85  E-value=1.6e-19  Score=148.57  Aligned_cols=192  Identities=14%  Similarity=0.021  Sum_probs=142.7

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      ...+..++  .. |++++|+..++++++.+|+++.+++.+|.++...|++.              +|+..++++++.+|+
T Consensus        41 ~~~a~~~~--~~-~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~--------------~A~~~~~~a~~~~~~  103 (252)
T 2ho1_A           41 IQLGLGYL--QR-GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPK--------------LADEEYRKALASDSR  103 (252)
T ss_dssp             HHHHHHHH--HT-TCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHH--Hc-CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHCcC
Confidence            34444454  45 89999999999999999999999999999999888865              888888888888888


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc--cCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcC--
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ--MAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSD--  187 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~--l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~--  187 (259)
                      ++.++..+|.++...|++.          ++...++++++  .+|.++.++..+|.++...++.+.....+..++...  
T Consensus       104 ~~~~~~~la~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  173 (252)
T 2ho1_A          104 NARVLNNYGGFLYEQKRYE----------EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN  173 (252)
T ss_dssp             CHHHHHHHHHHHHHTTCHH----------HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred             cHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence            8888888888888888776          45667777777  777777777777777776655432222111111000  


Q ss_pred             ------------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159         188 ------------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL  251 (259)
Q Consensus       188 ------------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~  251 (259)
                                  ...|++++|+.+++++++.+| +....+..++.++...|++++|.+.+++++++.|++++-...
T Consensus       174 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  248 (252)
T 2ho1_A          174 QPSVALEMADLLYKEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF  248 (252)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence                        014788888888888888888 667778888888888888888888888888888777765443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.84  E-value=1.3e-21  Score=150.69  Aligned_cols=126  Identities=12%  Similarity=0.071  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhcc
Q psy9159          94 YILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKL  173 (259)
Q Consensus        94 ~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~  173 (259)
                      .+++|++.+++++..+|+++.+++.+|.++...|++.          .|++.++++|+++|+++.+|+.+|.++...   
T Consensus        12 ~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---   78 (150)
T 4ga2_A           12 DVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYD----------LAKKYICTYINVQERDPKAHRFLGLLYELE---   78 (150)
T ss_dssp             HHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---
T ss_pred             hHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Confidence            3469999999999999999999999999999999987          578999999999999999999999999875   


Q ss_pred             chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHH-HHHHhcCCCCCccchh
Q psy9159         174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQW-LDKAKAIPVVSYESHD  250 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~-~~kal~l~p~~~~~~~  250 (259)
                                       |++++|+.+|+++++++| +++.+++.+|.+|..+|++++|.+. +++|++++|++++--.
T Consensus        79 -----------------~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~  138 (150)
T 4ga2_A           79 -----------------ENTDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK  138 (150)
T ss_dssp             -----------------TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred             -----------------CchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence                             889999999999999999 7899999999999999999887765 6999999999886433

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.84  E-value=3.2e-20  Score=138.79  Aligned_cols=122  Identities=16%  Similarity=0.113  Sum_probs=111.8

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHH
Q psy9159          56 ELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEK  135 (259)
Q Consensus        56 ~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~  135 (259)
                      ++..++|+.++++..+|.+|+..|++.              +|++.|+++++++|+++.+|.++|.++..+|++.     
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~--------------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-----   64 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYP--------------TAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQ-----   64 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHH-----
Confidence            345689999999999999999999976              9999999999999999999999999999999987     


Q ss_pred             HhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhH
Q psy9159         136 IKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQ  215 (259)
Q Consensus       136 ~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~  215 (259)
                           .|+..++++|+++|+++.+|+.+|.++..+                    |++++|+.+|+++++++| ++..++
T Consensus        65 -----~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--------------------~~~~~A~~~~~~al~l~P-~~~~a~  118 (126)
T 4gco_A           65 -----RALDDCDTCIRLDSKFIKGYIRKAACLVAM--------------------REWSKAQRAYEDALQVDP-SNEEAR  118 (126)
T ss_dssp             -----HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred             -----HHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHCc-CCHHHH
Confidence                 567899999999999999999999999885                    889999999999999999 789999


Q ss_pred             HHHHHHH
Q psy9159         216 LLIAKCY  222 (259)
Q Consensus       216 ~~la~~~  222 (259)
                      ..|+.|+
T Consensus       119 ~~l~~~l  125 (126)
T 4gco_A          119 EGVRNCL  125 (126)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            9998875

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.84  E-value=3.4e-21  Score=148.87  Aligned_cols=126  Identities=7%  Similarity=-0.122  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHH
Q psy9159          90 ASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYE  169 (259)
Q Consensus        90 ~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~  169 (259)
                      +++..+..+-..++++++++|+++.+++.+|.++...|++.          +|...|+++++++|+++.+|+.+|.++..
T Consensus        13 ~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~----------eA~~~~~~al~~~P~~~~~~~~lg~~~~~   82 (151)
T 3gyz_A           13 TAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIE----------EAEVFFRFLCIYDFYNVDYIMGLAAIYQI   82 (151)
T ss_dssp             HHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            44445556667789999999999999999999999999987          57799999999999999999999999987


Q ss_pred             hhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         170 ISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      .                    |++++|+.+|++|++++| +++.+|+++|.+|..+|++++|++.|++++++.|+++
T Consensus        83 ~--------------------g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           83 K--------------------EQFQQAADLYAVAFALGK-NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             T--------------------TCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             H--------------------ccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            5                    889999999999999999 7899999999999999999999999999999998765

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.83  E-value=1.2e-19  Score=167.72  Aligned_cols=158  Identities=16%  Similarity=0.063  Sum_probs=132.4

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      |++++|+..++++++.+|+++++++.+|.++...|++.              +|++.++++++++|+++.++..+|.++.
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--------------~A~~~~~~al~~~p~~~~~~~~lg~~~~   68 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTT--------------AGEMAVQRGLALHPGHPEAVARLGRVRW   68 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHTTSTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999875              9999999999999999999999999999


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE  204 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi  204 (259)
                      ..|++.          +|...++++++++|+++.+++.+|.++...                    |++++|+++|++++
T Consensus        69 ~~g~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------------g~~~~A~~~~~~al  118 (568)
T 2vsy_A           69 TQQRHA----------EAAVLLQQASDAAPEHPGIALWLGHALEDA--------------------GQAEAAAAAYTRAH  118 (568)
T ss_dssp             HTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHH
T ss_pred             HCCCHH----------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHH
Confidence            999887          567899999999999999999999999875                    88999999999999


Q ss_pred             hhCCCCcHHhHHHHHHHHHHh---CCHHHHHHHHHHHhcCCCCCcc
Q psy9159         205 ELAPAPWKENQLLIAKCYIEA---GEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       205 ~l~P~~~~~~~~~la~~~~~~---g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      +++| ++..++..+|.++..+   |++++|++.++++++.+|.+.+
T Consensus       119 ~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  163 (568)
T 2vsy_A          119 QLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE  163 (568)
T ss_dssp             HHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred             HhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence            9999 7799999999999999   9999999999999999998753

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.83  E-value=5.5e-19  Score=157.16  Aligned_cols=190  Identities=12%  Similarity=0.047  Sum_probs=156.1

Q ss_pred             HHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChH
Q psy9159          35 IDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSN  114 (259)
Q Consensus        35 ~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~  114 (259)
                      +..++  .. |++++|+..++++++.+|.++.++..+|.+|...|++.              +|+..++++++.+|+++.
T Consensus       150 a~~~~--~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------------~A~~~~~~~~~~~~~~~~  212 (450)
T 2y4t_A          150 ALNAF--GS-GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPR--------------KAISDLKAASKLKNDNTE  212 (450)
T ss_dssp             HHHHH--HH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGG--------------GGHHHHHHHHHHHCSCHH
T ss_pred             HHHHH--Hc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCCCCHH
Confidence            33455  45 99999999999999999999999999999999999986              999999999999999999


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHH------------HHHHHHhhccchHHHHHHH
Q psy9159         115 TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLK------------GRYQYEISKLSFFERKIAV  182 (259)
Q Consensus       115 ~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~l------------G~~~~~~~~~~~~~~~~~~  182 (259)
                      ++..+|.++...|++.          .+...++++++++|++..++..+            |.++...++.......+..
T Consensus       213 ~~~~l~~~~~~~g~~~----------~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  282 (450)
T 2y4t_A          213 AFYKISTLYYQLGDHE----------LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES  282 (450)
T ss_dssp             HHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999998877          45678888888888888877666            7777766654322221111


Q ss_pred             HHhc------------------CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         183 LIVS------------------DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       183 ~~~~------------------~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      ++-.                  ....|++++|+.+++++++++| ++..++..+|.++...|++++|++.++++++++|+
T Consensus       283 ~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  361 (450)
T 2y4t_A          283 VMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN  361 (450)
T ss_dssp             HHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence            1000                  0125999999999999999999 78999999999999999999999999999999999


Q ss_pred             Cccchhhh
Q psy9159         245 SYESHDLS  252 (259)
Q Consensus       245 ~~~~~~~~  252 (259)
                      +++....+
T Consensus       362 ~~~~~~~l  369 (450)
T 2y4t_A          362 DQQIREGL  369 (450)
T ss_dssp             CHHHHHHH
T ss_pred             hHHHHHHH
Confidence            87654433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.83  E-value=4e-20  Score=153.74  Aligned_cols=194  Identities=13%  Similarity=-0.008  Sum_probs=126.7

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHH----HHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPD----VLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME  107 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~  107 (259)
                      ...+..++  .. |++++|+..++++++ .|.+++    ++..+|.++...|++.              +|+..++++++
T Consensus        41 ~~l~~~~~--~~-~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~--------------~A~~~~~~a~~  102 (272)
T 3u4t_A           41 NRRAVCYY--EL-AKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDS--------------LAIQQYQAAVD  102 (272)
T ss_dssp             HHHHHHHH--HT-TCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHH
T ss_pred             HHHHHHHH--HH-hhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHH--------------HHHHHHHHHHh
Confidence            44444444  45 777777777777777 444433    3777777777777654              77777777777


Q ss_pred             hCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHH-HHHHHhhccchHHHHHHH----
Q psy9159         108 LAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKG-RYQYEISKLSFFERKIAV----  182 (259)
Q Consensus       108 ~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG-~~~~~~~~~~~~~~~~~~----  182 (259)
                      ++|+++.++..+|.++...|++.          .|...++++++++|+++.+++.+| .++. .+++....+.+..    
T Consensus       103 ~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~  171 (272)
T 3u4t_A          103 RDTTRLDMYGQIGSYFYNKGNFP----------LAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADSSFVKVLEL  171 (272)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHH----------HHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHccCHH----------HHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence            77777777777777777777665          344555555555555555555555 3322 2222111111000    


Q ss_pred             -------------HHhcCCCCCcHHHHHHHHHHHHhhC---CCC-----cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         183 -------------LIVSDLDEPTAEDAIANCLKAEELA---PAP-----WKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       183 -------------~~~~~~~~g~~~eAi~~~~kAi~l~---P~~-----~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                                   .+........+++|+.+|++++++.   | +     ...++..+|.+|...|++++|++++++++++
T Consensus       172 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  250 (272)
T 3u4t_A          172 KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG-AKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL  250 (272)
T ss_dssp             STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGG-GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence                         0000001133889999999999986   5 3     2367899999999999999999999999999


Q ss_pred             CCCCccchhhhhhh
Q psy9159         242 PVVSYESHDLSTTY  255 (259)
Q Consensus       242 ~p~~~~~~~~~~~~  255 (259)
                      +|+++..++.+...
T Consensus       251 ~p~~~~a~~~l~~~  264 (272)
T 3u4t_A          251 DPTNKKAIDGLKMK  264 (272)
T ss_dssp             CTTCHHHHHHHC--
T ss_pred             CccHHHHHHHhhhh
Confidence            99999877766543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.83  E-value=1.7e-19  Score=163.73  Aligned_cols=183  Identities=15%  Similarity=0.141  Sum_probs=155.0

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI  121 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~  121 (259)
                      .. |++++|+..++++++.+|+++.++..+|.++...|++.              +|+..++++++++|+++.++..+|.
T Consensus       288 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------~A~~~~~~a~~~~~~~~~~~~~la~  352 (537)
T 3fp2_A          288 DK-ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYK--------------NAKEDFQKAQSLNPENVYPYIQLAC  352 (537)
T ss_dssp             CS-SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTCSHHHHHHHH
T ss_pred             Hh-cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45 89999999999999999999999999999999988875              9999999999999999999999999


Q ss_pred             HHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhc---CC----C-----
Q psy9159         122 CVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVS---DL----D-----  189 (259)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~---~~----~-----  189 (259)
                      ++...|++.          .+...++++++++|+++.++..+|.++...++.......+..++-.   ..    .     
T Consensus       353 ~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  422 (537)
T 3fp2_A          353 LLYKQGKFT----------ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI  422 (537)
T ss_dssp             HHHHTTCHH----------HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred             HHHHcCCHH----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence            999998887          5678999999999999999999999999988765433322221110   00    0     


Q ss_pred             --------C----------CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchh
Q psy9159         190 --------E----------PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHD  250 (259)
Q Consensus       190 --------~----------g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~  250 (259)
                              .          |++++|+.+|+++++++| ++..++..+|.+|..+|++++|+++|+++++++|.+++...
T Consensus       423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  500 (537)
T 3fp2_A          423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ  500 (537)
T ss_dssp             HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred             HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence                    1          899999999999999999 78999999999999999999999999999999998876543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.83  E-value=2e-19  Score=146.62  Aligned_cols=139  Identities=17%  Similarity=0.150  Sum_probs=129.4

Q ss_pred             CCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhhchhhHHHHHhcH
Q psy9159          61 QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP-NNSNTQKWYGICVGANGQFQSLKEKIKCG  139 (259)
Q Consensus        61 ~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P-~~~~~~~~la~~~~~~~~~~~~~~~~~~~  139 (259)
                      .|.+|++++.+|.++...|++.              +|+..++++++++| .++.+++++|.++...|++.         
T Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~--------------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~---------   59 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAKNYA--------------VAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYK---------   59 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHH---------
T ss_pred             cccCHHHHHHHHHHHHHccCHH--------------HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHH---------
Confidence            4678899999999999999875              99999999999999 99999999999999999887         


Q ss_pred             HHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcH-------
Q psy9159         140 VVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWK-------  212 (259)
Q Consensus       140 ~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~-------  212 (259)
                       .|...++++++++|+++.+|+.+|.++...                    |++++|+.+|+++++++| ++.       
T Consensus        60 -~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------------------~~~~~A~~~~~~al~~~p-~~~~~~~~~~  117 (228)
T 4i17_A           60 -EAADYFDIAIKKNYNLANAYIGKSAAYRDM--------------------KNNQEYIATLTEGIKAVP-GNATIEKLYA  117 (228)
T ss_dssp             -HHHHHHHHHHHTTCSHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred             -HHHHHHHHHHHhCcchHHHHHHHHHHHHHc--------------------ccHHHHHHHHHHHHHHCC-CcHHHHHHHH
Confidence             567899999999999999999999999875                    889999999999999999 667       


Q ss_pred             HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         213 ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       213 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      .++..+|.++..+|++++|++.|+++++++|+
T Consensus       118 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A          118 IYYLKEGQKFQQAGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred             HHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            66999999999999999999999999999987

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.83  E-value=3.1e-20  Score=138.83  Aligned_cols=117  Identities=17%  Similarity=0.247  Sum_probs=106.6

Q ss_pred             HHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHH
Q psy9159         104 KAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVL  183 (259)
Q Consensus       104 kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~  183 (259)
                      +...+||+.++++...|..+...|++.          .|++.|+++|+++|+++.+|+.+|.++..+             
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-------------   60 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYP----------TAMRHYNEAVKRDPENAILYSNRAACLTKL-------------   60 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-------------
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHhhHHHhh-------------
Confidence            455799999999999999999999988          577999999999999999999999999885             


Q ss_pred             HhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159         184 IVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL  251 (259)
Q Consensus       184 ~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~  251 (259)
                             |++++|+.+|++|++++| +++.+|+.+|.+|..+|++++|++.|+++++++|++.+-...
T Consensus        61 -------~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~  120 (126)
T 4gco_A           61 -------MEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG  120 (126)
T ss_dssp             -------TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             -------ccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence                   889999999999999999 789999999999999999999999999999999988865443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.83  E-value=3.6e-19  Score=158.31  Aligned_cols=192  Identities=14%  Similarity=0.104  Sum_probs=150.2

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      ...+..+..++  .. |++++|+..|+++++.+|+++.+++.+|.+|...|++.              +|+..+++++++
T Consensus        27 ~~~~~~~~~~~--~~-g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~--------------~A~~~~~~al~~   89 (450)
T 2y4t_A           27 EKHLELGKKLL--AA-GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSK--------------AALPDLTKVIQL   89 (450)
T ss_dssp             HHHHHHHHHHH--HT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--HC-CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHhc
Confidence            34456676777  56 99999999999999999999999999999999999875              999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh---hHHHHHH------------HHHHHhhcc
Q psy9159         109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF---TLYSLKG------------RYQYEISKL  173 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~---~~~~~lG------------~~~~~~~~~  173 (259)
                      +|+++.++..+|.++...|++.          .|...++++++++|+++   .++..++            .++...++.
T Consensus        90 ~p~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  159 (450)
T 2y4t_A           90 KMDFTAARLQRGHLLLKQGKLD----------EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY  159 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            9999999999999999998887          35566677777777766   6655553            334444443


Q ss_pred             chHHHHHHHHHhcC--------------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159         174 SFFERKIAVLIVSD--------------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK  239 (259)
Q Consensus       174 ~~~~~~~~~~~~~~--------------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal  239 (259)
                      ......+..++-..              ...|++++|+.+|+++++++| +++.++..+|.+|...|++++|++.+++++
T Consensus       160 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  238 (450)
T 2y4t_A          160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECL  238 (450)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            22211111110000              014889999999999999999 778999999999999999999999999999


Q ss_pred             cCCCCCccc
Q psy9159         240 AIPVVSYES  248 (259)
Q Consensus       240 ~l~p~~~~~  248 (259)
                      +++|.+...
T Consensus       239 ~~~p~~~~~  247 (450)
T 2y4t_A          239 KLDQDHKRC  247 (450)
T ss_dssp             HHCTTCHHH
T ss_pred             HhCCChHHH
Confidence            999887653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.83  E-value=1.9e-18  Score=147.80  Aligned_cols=181  Identities=9%  Similarity=-0.022  Sum_probs=150.0

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh-------hchhcccCcHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHH
Q psy9159          48 AKAYNLTMELNNKQPNDPDVLYRLAKACHCL-------YDIKRRENDKEASEKYILQGIEYAKKAME-LAPNNSNTQKWY  119 (259)
Q Consensus        48 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-------g~~~~~~~~~~~~~~~~~~A~~~~~kal~-~~P~~~~~~~~l  119 (259)
                      ++|+..|++++..+|+++++|+.+|..+...       |+..       ...+..++|+..+++|++ ++|+++.+|..+
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~-------~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~  105 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMN-------NAKLFSDEAANIYERAISTLLKKNMLLYFAY  105 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCH-------HHHHHHHHHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchh-------hcccchHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            7899999999999999999999999998754       4431       334456799999999999 799999999999


Q ss_pred             HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChh-HHHHHHHHHHHhhccchHHHHHHHHHhcCC----------
Q psy9159         120 GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT-LYSLKGRYQYEISKLSFFERKIAVLIVSDL----------  188 (259)
Q Consensus       120 a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~-~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----------  188 (259)
                      |.++...|++.          .+...|+++++++|+++. +|..+|.++.+.++++.....+..++-..+          
T Consensus       106 ~~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a  175 (308)
T 2ond_A          106 ADYEESRMKYE----------KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA  175 (308)
T ss_dssp             HHHHHHTTCHH----------HHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHH
T ss_pred             HHHHHhcCCHH----------HHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            99999888876          567899999999999997 999999999888776543333332221111          


Q ss_pred             -----CCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         189 -----DEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       189 -----~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                           ..|++++|+.+|+++++++| +++.+|..+|.++..+|++++|+..|+++++..+.++
T Consensus       176 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p  237 (308)
T 2ond_A          176 LMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence                 14899999999999999999 7799999999999999999999999999999743333

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.82  E-value=7.9e-19  Score=159.37  Aligned_cols=200  Identities=15%  Similarity=0.152  Sum_probs=146.3

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      +.....+..++  .. |++++|+..|++++..+|+++.+++.+|.+|..+|++.              +|+..+++++++
T Consensus        26 ~~~~~~g~~~~--~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------------~A~~~~~~al~~   88 (537)
T 3fp2_A           26 VQLKNRGNHFF--TA-KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLE--------------KVIEFTTKALEI   88 (537)
T ss_dssp             HHHHHHHHHHH--HT-TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--Hh-ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHhc
Confidence            34567777777  67 99999999999999999999999999999999999875              999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhhchhhHHHHH----------------------------------------------------
Q psy9159         109 APNNSNTQKWYGICVGANGQFQSLKEKI----------------------------------------------------  136 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~----------------------------------------------------  136 (259)
                      +|+++.++..+|.++...|++..+...+                                                    
T Consensus        89 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~  168 (537)
T 3fp2_A           89 KPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA  168 (537)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH
T ss_pred             CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH
Confidence            9999999999999999998877654321                                                    


Q ss_pred             -----------------------------------------------hcHHHHHHHHHHHHccCCCChhH-------HHH
Q psy9159         137 -----------------------------------------------KCGVVFRDQMNKAIQMAPKDFTL-------YSL  162 (259)
Q Consensus       137 -----------------------------------------------~~~~~a~~~~~kAl~l~P~~~~~-------~~~  162 (259)
                                                                     +....+...++++++.+|+++.+       +..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  248 (537)
T 3fp2_A          169 SFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCY  248 (537)
T ss_dssp             HHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHH
T ss_pred             HHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHH
Confidence                                                           12345667888899999998765       555


Q ss_pred             HHHHHHHhhccchHHHHHHHHHh-------------cCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHH
Q psy9159         163 KGRYQYEISKLSFFERKIAVLIV-------------SDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYA  229 (259)
Q Consensus       163 lG~~~~~~~~~~~~~~~~~~~~~-------------~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~  229 (259)
                      +|.++...++.......+..++.             .....|++++|+.+|+++++++| +++.++..+|.++...|+++
T Consensus       249 ~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~  327 (537)
T 3fp2_A          249 TGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYK  327 (537)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHH
Confidence            55655555544322221111110             11235777777777777777777 56677777777777777777


Q ss_pred             HHHHHHHHHhcCCCCCc
Q psy9159         230 KAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       230 eA~~~~~kal~l~p~~~  246 (259)
                      +|++.++++++++|.++
T Consensus       328 ~A~~~~~~a~~~~~~~~  344 (537)
T 3fp2_A          328 NAKEDFQKAQSLNPENV  344 (537)
T ss_dssp             HHHHHHHHHHHHCTTCS
T ss_pred             HHHHHHHHHHHhCCCCH
Confidence            77777777777776655

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.82  E-value=1.4e-18  Score=159.95  Aligned_cols=184  Identities=14%  Similarity=0.055  Sum_probs=137.1

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      |++++|+..|+++++.+|+++.+|..+|.+|...|++.              +|++.++++++.+|+++.++..++.++.
T Consensus       387 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------------~A~~~~~~~~~~~~~~~~~~~~l~~~~~  452 (597)
T 2xpi_A          387 NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHD--------------QAISAYTTAARLFQGTHLPYLFLGMQHM  452 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            66666666666666666666666666666666655543              7777777777777777777777777777


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhc------C-----------
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVS------D-----------  187 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~------~-----------  187 (259)
                      ..|++.          ++.+.++++++++|+++.+|..+|.++...++.+...+.+..++..      .           
T Consensus       453 ~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l  522 (597)
T 2xpi_A          453 QLGNIL----------LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL  522 (597)
T ss_dssp             HHTCHH----------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred             HcCCHH----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence            766665          5678888999999999999999999888887754332222211110      0           


Q ss_pred             ----CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhh
Q psy9159         188 ----LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLST  253 (259)
Q Consensus       188 ----~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~  253 (259)
                          ...|++++|++.|+++++++| ++..+|..+|.+|...|++++|++.++++++++|++++....+.
T Consensus       523 ~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~  591 (597)
T 2xpi_A          523 GHAYRKLKMYDAAIDALNQGLLLST-NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK  591 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence                126999999999999999999 77999999999999999999999999999999999876554443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.82  E-value=2.6e-18  Score=142.60  Aligned_cols=188  Identities=15%  Similarity=0.057  Sum_probs=150.9

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP  110 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P  110 (259)
                      ....+..++  .. |++++|+..++++++.+|+++.++..+|.+|...|++.              +|+..++++++++|
T Consensus        46 ~~~l~~~~~--~~-~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~--------------~A~~~~~~al~~~~  108 (275)
T 1xnf_A           46 LYERGVLYD--SL-GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD--------------AAYEAFDSVLELDP  108 (275)
T ss_dssp             HHHHHHHHH--HT-TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCT
T ss_pred             HHHHHHHHH--Hc-ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH--------------HHHHHHHHHHhcCc
Confidence            344555555  56 99999999999999999999999999999999999875              99999999999999


Q ss_pred             CChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhc----
Q psy9159         111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVS----  186 (259)
Q Consensus       111 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~----  186 (259)
                      +++.++..+|.++...|++.          .+...++++++++|+++..+..++.. ...++.......+...+..    
T Consensus       109 ~~~~~~~~la~~~~~~g~~~----------~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~  177 (275)
T 1xnf_A          109 TYNYAHLNRGIALYYGGRDK----------LAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKE  177 (275)
T ss_dssp             TCTHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCC
T ss_pred             cccHHHHHHHHHHHHhccHH----------HHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcc
Confidence            99999999999999998887          56788999999999998777666643 4445443322222111111    


Q ss_pred             ---------CCCCCcHHHHHHHHHHHHhhCCCCc----HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         187 ---------DLDEPTAEDAIANCLKAEELAPAPW----KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       187 ---------~~~~g~~~eAi~~~~kAi~l~P~~~----~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                               ....++.++|+..++++++.+| ..    ..++..+|.++..+|++++|++.|+++++++|.+..
T Consensus       178 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  250 (275)
T 1xnf_A          178 QWGWNIVEFYLGNISEQTLMERLKADATDNT-SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  250 (275)
T ss_dssp             STHHHHHHHHTTSSCHHHHHHHHHHHCCSHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHhcccc-cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence                     0124677899999999988877 33    578999999999999999999999999999997754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.82  E-value=3.9e-19  Score=151.04  Aligned_cols=164  Identities=9%  Similarity=-0.027  Sum_probs=145.3

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      +..+..+..++  .. |++++|+..|+++++.+|+++++++.+|.++...|++.              +|+..++++++.
T Consensus       118 ~~~~~~a~~~~--~~-g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~--------------~A~~~l~~~~~~  180 (287)
T 3qou_A          118 ELXAQQAMQLM--QE-SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSE--------------DAEAVLXTIPLQ  180 (287)
T ss_dssp             HHHHHHHHHHH--HT-TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH--------------HHHHHHTTSCGG
T ss_pred             hhHHHHHHHHH--hC-CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHH--------------HHHHHHHhCchh
Confidence            34567777777  67 99999999999999999999999999999999999875              999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC
Q psy9159         109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL  188 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~  188 (259)
                      +|++...+...+..+...+...          .+...++++++++|+++.+++.+|.++...                  
T Consensus       181 ~p~~~~~~~~~~~~l~~~~~~~----------~a~~~l~~al~~~P~~~~~~~~la~~l~~~------------------  232 (287)
T 3qou_A          181 DQDTRYQGLVAQIELLXQAADT----------PEIQQLQQQVAENPEDAALATQLALQLHQV------------------  232 (287)
T ss_dssp             GCSHHHHHHHHHHHHHHHHTSC----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------------
T ss_pred             hcchHHHHHHHHHHHHhhcccC----------ccHHHHHHHHhcCCccHHHHHHHHHHHHHc------------------
Confidence            9977666666666666666655          356889999999999999999999999875                  


Q ss_pred             CCCcHHHHHHHHHHHHhhCCCCc--HHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         189 DEPTAEDAIANCLKAEELAPAPW--KENQLLIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       189 ~~g~~~eAi~~~~kAi~l~P~~~--~~~~~~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                        |++++|+..|.++++.+| ++  ..++..|+.++..+|+.++|+..|++++.
T Consensus       233 --g~~~~A~~~l~~~l~~~p-~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          233 --GRNEEALELLFGHLRXDL-TAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             --TCHHHHHHHHHHHHHHCT-TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             --ccHHHHHHHHHHHHhccc-ccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence              889999999999999999 66  77899999999999999999999999975

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.81  E-value=3.1e-18  Score=137.56  Aligned_cols=172  Identities=15%  Similarity=0.065  Sum_probs=153.5

Q ss_pred             HHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh-hchhcccCcHHHHHHHHHHHHHHHHHHHH--hCC
Q psy9159          34 EIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCL-YDIKRRENDKEASEKYILQGIEYAKKAME--LAP  110 (259)
Q Consensus        34 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-g~~~~~~~~~~~~~~~~~~A~~~~~kal~--~~P  110 (259)
                      .+..+.  .. |++++|+..+++++..+|+++.++..+|.++... |++.              +|+..++++++  .+|
T Consensus        48 l~~~~~--~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~--------------~A~~~~~~~~~~~~~~  110 (225)
T 2vq2_A           48 RAEIYQ--YL-KVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPA--------------ESMAYFDKALADPTYP  110 (225)
T ss_dssp             HHHHHH--HT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHH--------------HHHHHHHHHHTSTTCS
T ss_pred             HHHHHH--Hc-CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHH--------------HHHHHHHHHHcCcCCc
Confidence            344444  56 9999999999999999999999999999999999 8875              99999999999  777


Q ss_pred             CChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCC
Q psy9159         111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDE  190 (259)
Q Consensus       111 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (259)
                      +++.++..+|.++...|++.          .+...++++++++|+++.++..+|.++...                    
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------------  160 (225)
T 2vq2_A          111 TPYIANLNKGICSAKQGQFG----------LAEAYLKRSLAAQPQFPPAFKELARTKMLA--------------------  160 (225)
T ss_dssp             CHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--------------------
T ss_pred             chHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCchHHHHHHHHHHHc--------------------
Confidence            77899999999999998887          567899999999999999999999999875                    


Q ss_pred             CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                      |++++|+.+++++++++|.++...+..++.++...|+.++|..+++.+.+.+|++++....+
T Consensus       161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            88999999999999999933477788899999999999999999999999999988766554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.81  E-value=3.6e-19  Score=161.60  Aligned_cols=172  Identities=13%  Similarity=0.061  Sum_probs=148.3

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhch-hcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDI-KRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV  123 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~-~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~  123 (259)
                      +.+++++..+.+.....|+++.+++.+|.++...|++ .              +|+..++++++++|+++.+|..+|.++
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~--------------~A~~~~~~al~~~p~~~~a~~~lg~~~  147 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSP--------------EAEVLLSKAVKLEPELVEAWNQLGEVY  147 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHH--------------HHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            4588889999999999999999999999999999988 6              999999999999999999999999999


Q ss_pred             HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159         124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA  203 (259)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA  203 (259)
                      ...|++.          .|...++++++++|+ +.++..+|.++.....-....+           .|++++|+.+|++|
T Consensus       148 ~~~g~~~----------~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~-----------~g~~~~A~~~~~~a  205 (474)
T 4abn_A          148 WKKGDVT----------SAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEH-----------SRHVMDSVRQAKLA  205 (474)
T ss_dssp             HHHTCHH----------HHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHH-----------HHHHHHHHHHHHHH
T ss_pred             HHcCCHH----------HHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhh-----------hhhHHHHHHHHHHH
Confidence            9999887          577999999999999 7999999998876411101111           17799999999999


Q ss_pred             HhhCCCCcHHhHHHHHHHHHHh--------CCHHHHHHHHHHHhcCCCCCccchhhhh
Q psy9159         204 EELAPAPWKENQLLIAKCYIEA--------GEYAKAVQWLDKAKAIPVVSYESHDLST  253 (259)
Q Consensus       204 i~l~P~~~~~~~~~la~~~~~~--------g~~~eA~~~~~kal~l~p~~~~~~~~~~  253 (259)
                      ++++| ++..+|..+|.+|..+        |++++|+++|+++++++|...++.....
T Consensus       206 l~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  262 (474)
T 4abn_A          206 VQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHL  262 (474)
T ss_dssp             HHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHH
T ss_pred             HHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHH
Confidence            99999 7899999999999999        9999999999999999983223334333

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.80  E-value=9.4e-19  Score=156.88  Aligned_cols=193  Identities=16%  Similarity=0.076  Sum_probs=124.0

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      |++++|+..+++++..+|+++.++..+|.+|...|++.              +|+..++++++++|+++.++..+|.++.
T Consensus       227 ~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~--------------~A~~~~~~al~~~p~~~~~~~~lg~~y~  292 (472)
T 4g1t_A          227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPD--------------KAIELLKKALEYIPNNAYLHCQIGCCYR  292 (472)
T ss_dssp             ---CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchH--------------HHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            56677777777777777777777777777777777654              9999999999999999999999998876


Q ss_pred             Hhhchhh---------HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHH-----------
Q psy9159         125 ANGQFQS---------LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLI-----------  184 (259)
Q Consensus       125 ~~~~~~~---------~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~-----------  184 (259)
                      ..+....         ..........+...++++++++|+++.++..+|.++...++++.....+..++           
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~  372 (472)
T 4g1t_A          293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL  372 (472)
T ss_dssp             HHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHH
Confidence            5432211         11122233467889999999999999999999999998887653322221111           


Q ss_pred             ----hc---CCCCCcHHHHHHHHHHHHhhCCC-----------------------CcHHhHHHHHHHHHHhCCHHHHHHH
Q psy9159         185 ----VS---DLDEPTAEDAIANCLKAEELAPA-----------------------PWKENQLLIAKCYIEAGEYAKAVQW  234 (259)
Q Consensus       185 ----~~---~~~~g~~~eAi~~~~kAi~l~P~-----------------------~~~~~~~~la~~~~~~g~~~eA~~~  234 (259)
                          ++   ....|++++|+.+|++|++++|+                       +++.++..||.+|..+|++++|+++
T Consensus       373 ~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~  452 (472)
T 4g1t_A          373 LHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADED  452 (472)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence                01   11358999999999999877541                       4467899999999999999999999


Q ss_pred             HHHHhcCCCCCccchhh
Q psy9159         235 LDKAKAIPVVSYESHDL  251 (259)
Q Consensus       235 ~~kal~l~p~~~~~~~~  251 (259)
                      |++|++++|.+|....+
T Consensus       453 y~kALe~~~~~p~a~~~  469 (472)
T 4g1t_A          453 SERGLESGSLIPSASSW  469 (472)
T ss_dssp             -----------------
T ss_pred             HHHHHhcCCCCCcHhhc
Confidence            99999999999876544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.80  E-value=4.1e-18  Score=145.14  Aligned_cols=177  Identities=8%  Similarity=-0.073  Sum_probs=140.6

Q ss_pred             CCcCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhhchhcc------cCcH---------HHHHHHHHHHHHHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNK--QPNDPDVLYRLAKACHCLYDIKRR------ENDK---------EASEKYILQGIEYAKK  104 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~~------~~~~---------~~~~~~~~~A~~~~~k  104 (259)
                      .. +++++|++.+++++..  +|+++.+++.+|.++...|++.+.      +.+.         -.+.+.+++|+..+++
T Consensus        77 ~~-~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  155 (291)
T 3mkr_A           77 SH-SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKK  155 (291)
T ss_dssp             CS-TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CC-CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            45 8999999999999875  699999999999999999987631      1111         1234567888888888


Q ss_pred             HHHhCCCChHHHHHHHHHHH--HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHH
Q psy9159         105 AMELAPNNSNTQKWYGICVG--ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAV  182 (259)
Q Consensus       105 al~~~P~~~~~~~~la~~~~--~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~  182 (259)
                      +++++|++.......+++..  ..|++          .+|...++++++.+|+++.+|+.+|.++...            
T Consensus       156 ~~~~~p~~~~~~l~~a~~~l~~~~~~~----------~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~------------  213 (291)
T 3mkr_A          156 MQDQDEDATLTQLATAWVSLAAGGEKL----------QDAYYIFQEMADKCSPTLLLLNGQAACHMAQ------------  213 (291)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHCTTHH----------HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT------------
T ss_pred             HHhhCcCcHHHHHHHHHHHHHhCchHH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc------------
Confidence            88888887644332222221  11233          2678899999999999999999999988875            


Q ss_pred             HHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHH-HHHHHHHHhcCCCCCccchh
Q psy9159         183 LIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAK-AVQWLDKAKAIPVVSYESHD  250 (259)
Q Consensus       183 ~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~e-A~~~~~kal~l~p~~~~~~~  250 (259)
                              |++++|+.+|+++++++| +++.++.++|.++..+|+.++ +.++++++++++|+++.-..
T Consensus       214 --------g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          214 --------GRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE  273 (291)
T ss_dssp             --------TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             --------CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence                    889999999999999999 789999999999999999976 57899999999999886443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.80  E-value=6.7e-19  Score=135.96  Aligned_cols=115  Identities=14%  Similarity=0.009  Sum_probs=108.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhh
Q psy9159          52 NLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQS  131 (259)
Q Consensus        52 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~  131 (259)
                      ..+++++..+|+++++++.+|.++...|++.              +|+..|+++++++|+++.+|..+|.++...|++. 
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~--------------eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~-   87 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIE--------------EAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQ-   87 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHH-
Confidence            4578889999999999999999999999976              9999999999999999999999999999999988 


Q ss_pred             HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc
Q psy9159         132 LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW  211 (259)
Q Consensus       132 ~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~  211 (259)
                               .|+..|+++++++|+++.+|+.+|.++..+                    |++++|+.+|++++++.| +.
T Consensus        88 ---------~Ai~~~~~al~l~P~~~~~~~~lg~~~~~l--------------------g~~~eA~~~~~~al~l~~-~~  137 (151)
T 3gyz_A           88 ---------QAADLYAVAFALGKNDYTPVFHTGQCQLRL--------------------KAPLKAKECFELVIQHSN-DE  137 (151)
T ss_dssp             ---------HHHHHHHHHHHHSSSCCHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCC-CH
T ss_pred             ---------HHHHHHHHHHhhCCCCcHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCC-CH
Confidence                     578999999999999999999999999885                    889999999999999999 53

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.80  E-value=3.4e-18  Score=145.66  Aligned_cols=161  Identities=6%  Similarity=-0.021  Sum_probs=127.9

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------cCcHH-----H--H--
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------ENDKE-----A--S--   91 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~~~~~-----~--~--   91 (259)
                      +..+..+.  .. |++++|+..+++     |++++++..+|.++..+|+..+.           +.+..     .  .  
T Consensus       105 ~~la~~~~--~~-g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~  176 (291)
T 3mkr_A          105 LMAASIYF--YD-QNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLA  176 (291)
T ss_dssp             HHHHHHHH--HT-TCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--HC-CCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH
Confidence            33444444  45 899999998888     88899999999999988886631           11110     0  1  


Q ss_pred             --HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHH
Q psy9159          92 --EKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYE  169 (259)
Q Consensus        92 --~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~  169 (259)
                        .+.+++|+..++++++.+|+++.++..+|.++...|++.          +|...++++++++|+++.++..+|.++..
T Consensus       177 ~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~----------eA~~~l~~al~~~p~~~~~l~~l~~~~~~  246 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWE----------AAEGVLQEALDKDSGHPETLINLVVLSQH  246 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence              156899999999999999999999999999999999987          57799999999999999999999998877


Q ss_pred             hhccchHHHHHHHHHhcCCCCCcHHH-HHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHH
Q psy9159         170 ISKLSFFERKIAVLIVSDLDEPTAED-AIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWL  235 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~g~~~e-Ai~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~  235 (259)
                      .                    |+.++ +..+++++++++| +++.+    .....+.+.|+++..-|
T Consensus       247 ~--------------------g~~~eaa~~~~~~~~~~~P-~~~~~----~d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          247 L--------------------GKPPEVTNRYLSQLKDAHR-SHPFI----KEYRAKENDFDRLVLQY  288 (291)
T ss_dssp             T--------------------TCCHHHHHHHHHHHHHHCT-TCHHH----HHHHHHHHHHHHHHHHH
T ss_pred             c--------------------CCCHHHHHHHHHHHHHhCC-CChHH----HHHHHHHHHHHHHHHHc
Confidence            5                    66765 6789999999999 66553    34566677777776655

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.80  E-value=2.4e-18  Score=142.82  Aligned_cols=159  Identities=11%  Similarity=0.033  Sum_probs=138.3

Q ss_pred             CCcCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNK----QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQK  117 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~  117 (259)
                      .. |++++|+..++++++.    .|.++.+++.+|.++...|++.              +|+..++++++++|+++.++.
T Consensus        17 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------~A~~~~~~al~~~~~~~~~~~   81 (275)
T 1xnf_A           17 PT-LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA--------------LARNDFSQALAIRPDMPEVFN   81 (275)
T ss_dssp             CC-HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCCCCHHHHH
T ss_pred             cc-chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHH--------------HHHHHHHHHHHcCCCcHHHHH
Confidence            45 9999999999999997    4677899999999999999875              999999999999999999999


Q ss_pred             HHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHH
Q psy9159         118 WYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAI  197 (259)
Q Consensus       118 ~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi  197 (259)
                      .+|.++...|++.          .+...++++++++|+++.++..+|.++...                    |++++|+
T Consensus        82 ~la~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------------------g~~~~A~  131 (275)
T 1xnf_A           82 YLGIYLTQAGNFD----------AAYEAFDSVLELDPTYNYAHLNRGIALYYG--------------------GRDKLAQ  131 (275)
T ss_dssp             HHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCTHHHHHHHHHHHHT--------------------TCHHHHH
T ss_pred             HHHHHHHHccCHH----------HHHHHHHHHHhcCccccHHHHHHHHHHHHh--------------------ccHHHHH
Confidence            9999999999887          567899999999999999999999999875                    7789999


Q ss_pred             HHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         198 ANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       198 ~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      .+|+++++++| ++......++.+ ...|++++|+..+++++...|.+..
T Consensus       132 ~~~~~a~~~~~-~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~  179 (275)
T 1xnf_A          132 DDLLAFYQDDP-NDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQW  179 (275)
T ss_dssp             HHHHHHHHHCT-TCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCST
T ss_pred             HHHHHHHHhCC-CChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchH
Confidence            99999999999 556555544444 6668999999999888888776543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.80  E-value=4.5e-19  Score=167.77  Aligned_cols=169  Identities=11%  Similarity=0.003  Sum_probs=141.9

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP  110 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P  110 (259)
                      .+..+..++  .. |++++|+..++++++.+|+++++++.+|.++...|++.              +|+..|+++++++|
T Consensus       436 ~~~~a~~~~--~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~--------------~A~~~~~~al~l~P  498 (681)
T 2pzi_A          436 PLMEVRALL--DL-GDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYD--------------SATKHFTEVLDTFP  498 (681)
T ss_dssp             HHHHHHHHH--HH-TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHHST
T ss_pred             HHHHHHHHH--hc-CCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCC
Confidence            345565666  56 99999999999999999999999999999999999875              99999999999999


Q ss_pred             CChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCC
Q psy9159         111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDE  190 (259)
Q Consensus       111 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (259)
                      +++.++..+|.++...|++.          . ...|++|++++|+++.+|+.+|.++...                    
T Consensus       499 ~~~~~~~~lg~~~~~~g~~~----------~-~~~~~~al~~~P~~~~a~~~lg~~~~~~--------------------  547 (681)
T 2pzi_A          499 GELAPKLALAATAELAGNTD----------E-HKFYQTVWSTNDGVISAAFGLARARSAE--------------------  547 (681)
T ss_dssp             TCSHHHHHHHHHHHHHTCCC----------T-TCHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------
T ss_pred             CChHHHHHHHHHHHHcCChH----------H-HHHHHHHHHhCCchHHHHHHHHHHHHHc--------------------
Confidence            99999999999999999987          4 4788999999999999999999999875                    


Q ss_pred             CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCC-----HHHHHHHHHHHhcCCCCCccc
Q psy9159         191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGE-----YAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~-----~~eA~~~~~kal~l~p~~~~~  248 (259)
                      |++++|+.+|++|++++| ++..++.++|.++...++     .++..+..+....+.+.+++.
T Consensus       548 g~~~~A~~~~~~al~l~P-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~  609 (681)
T 2pzi_A          548 GDRVGAVRTLDEVPPTSR-HFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV  609 (681)
T ss_dssp             TCHHHHHHHHHTSCTTST-THHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred             CCHHHHHHHHHhhcccCc-ccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence            889999999999999999 789999999999988776     233333334444455544443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.79  E-value=1.3e-18  Score=156.05  Aligned_cols=188  Identities=15%  Similarity=0.063  Sum_probs=119.1

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc--------------cCcHH-------------HHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR--------------ENDKE-------------ASEKY   94 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~--------------~~~~~-------------~~~~~   94 (259)
                      +. ++|++|++.|+++++.+|++++++..+|.++..+++..+.              +.+..             ...+.
T Consensus       150 ~~-~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~  228 (472)
T 4g1t_A          150 GG-NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE  228 (472)
T ss_dssp             CT-THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-----
T ss_pred             cc-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhH
Confidence            44 7899999999999999999999999999998877654321              01110             11234


Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc
Q psy9159          95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS  174 (259)
Q Consensus        95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~  174 (259)
                      +++|...+++++.++|+++.++..+|.++...|++.          .+...++++++++|+++.+++.+|.+|.......
T Consensus       229 ~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~  298 (472)
T 4g1t_A          229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPD----------KAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQV  298 (472)
T ss_dssp             -CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchH----------HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHh
Confidence            567777777777777777777777777777777665          5678889999999999999999998875532110


Q ss_pred             ----hHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         175 ----FFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       175 ----~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                          .........     ..+.+++|+.+|+++++++| ....++..+|.++..+|++++|+++|+++++++|.+.
T Consensus       299 ~~~~~~~~~~~~~-----~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~  368 (472)
T 4g1t_A          299 MNLRENGMYGKRK-----LLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV  368 (472)
T ss_dssp             HHC------CHHH-----HHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred             hhHHHHHHHHHHH-----HHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence                000000000     01234555556666666655 4455555566666666666666666666655555443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.79  E-value=1.8e-18  Score=149.72  Aligned_cols=154  Identities=12%  Similarity=0.074  Sum_probs=143.7

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPN--DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWY  119 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~l  119 (259)
                      .. |++++|+..++++++.+|+  ++.++..+|.++...|++.              +|+..++++++++|+++.++..+
T Consensus       193 ~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~--------------~A~~~~~~al~~~~~~~~~~~~l  257 (368)
T 1fch_A          193 SD-SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD--------------KAVDCFTAALSVRPNDYLLWNKL  257 (368)
T ss_dssp             HH-HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hc-ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCcCCHHHHHHH
Confidence            45 9999999999999999999  8999999999999999875              99999999999999999999999


Q ss_pred             HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHH
Q psy9159         120 GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIAN  199 (259)
Q Consensus       120 a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~  199 (259)
                      |.++...|++.          .+...++++++++|+++.++..+|.++...                    |++++|+.+
T Consensus       258 ~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--------------------g~~~~A~~~  307 (368)
T 1fch_A          258 GATLANGNQSE----------EAVAAYRRALELQPGYIRSRYNLGISCINL--------------------GAHREAVEH  307 (368)
T ss_dssp             HHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------------TCHHHHHHH
T ss_pred             HHHHHHcCCHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--------------------CCHHHHHHH
Confidence            99999999887          567899999999999999999999999886                    889999999


Q ss_pred             HHHHHhhCCCCc-----------HHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         200 CLKAEELAPAPW-----------KENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       200 ~~kAi~l~P~~~-----------~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                      |+++++++| +.           ..+|..+|.++..+|++++|...++++++.
T Consensus       308 ~~~al~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  359 (368)
T 1fch_A          308 FLEALNMQR-KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST  359 (368)
T ss_dssp             HHHHHHHHH-TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred             HHHHHHhCC-CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence            999999999 55           788999999999999999999999888764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.79  E-value=5.4e-19  Score=135.69  Aligned_cols=123  Identities=14%  Similarity=0.058  Sum_probs=113.5

Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHH
Q psy9159          99 IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFER  178 (259)
Q Consensus        99 ~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~  178 (259)
                      -..++++++++|+++.+++.+|.++...|++.          .|...++++++++|+++.+|+.+|.++...        
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------   68 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYE----------DAHXVFQALCVLDHYDSRFFLGLGACRQAM--------   68 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChH----------HHHHHHHHHHHcCcccHHHHHHHHHHHHHH--------
Confidence            34688999999999999999999999999987          567899999999999999999999999875        


Q ss_pred             HHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         179 KIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       179 ~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                                  |++++|+.+|+++++++| +++.+++++|.+|..+|++++|+++|+++++++|++++...+.
T Consensus        69 ------------g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  129 (148)
T 2vgx_A           69 ------------GQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS  129 (148)
T ss_dssp             ------------TCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             ------------hhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence                        889999999999999999 7789999999999999999999999999999999988765543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.79  E-value=1e-18  Score=148.29  Aligned_cols=158  Identities=11%  Similarity=0.031  Sum_probs=146.9

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI  121 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~  121 (259)
                      .. |++++|+..++++++.+|+++.++..+|.++...|++.              +|+..++++++++|+++.++..+|.
T Consensus       150 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--------------~A~~~~~~~~~~~~~~~~~~~~l~~  214 (327)
T 3cv0_A          150 AP-NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYD--------------SAAANLRRAVELRPDDAQLWNKLGA  214 (327)
T ss_dssp             SH-HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             Hc-ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHH--------------HHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            44 99999999999999999999999999999999999875              9999999999999999999999999


Q ss_pred             HHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH
Q psy9159         122 CVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL  201 (259)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~  201 (259)
                      ++...|++.          ++...++++++++|+++.++..+|.++...                    |++++|+.+|+
T Consensus       215 ~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--------------------g~~~~A~~~~~  264 (327)
T 3cv0_A          215 TLANGNRPQ----------EALDAYNRALDINPGYVRVMYNMAVSYSNM--------------------SQYDLAAKQLV  264 (327)
T ss_dssp             HHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHH
T ss_pred             HHHHcCCHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--------------------ccHHHHHHHHH
Confidence            999998887          567899999999999999999999999875                    88999999999


Q ss_pred             HHHhhCCCC------------cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159         202 KAEELAPAP------------WKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       202 kAi~l~P~~------------~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~  245 (259)
                      ++++++| .            ...++..+|.++..+|++++|...++++++..|.+
T Consensus       265 ~a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~  319 (327)
T 3cv0_A          265 RAIYMQV-GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE  319 (327)
T ss_dssp             HHHHHHT-TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred             HHHHhCC-ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence            9999999 6            68899999999999999999999999998876543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.78  E-value=2.4e-17  Score=151.78  Aligned_cols=179  Identities=13%  Similarity=0.207  Sum_probs=129.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      |++++|+..++++++.+|+++.++..+|.+|...|+              +++|+..++++++++|++..+|..++.++.
T Consensus       353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  418 (597)
T 2xpi_A          353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNK--------------ISEARRYFSKSSTMDPQFGPAWIGFAHSFA  418 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            444444444444444444444444444444444444              458888888888888888888888888888


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcC--------------CCC
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSD--------------LDE  190 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~--------------~~~  190 (259)
                      ..|++.          +|.+.++++++++|+++.+|..+|.+|...++.+...+.+..++...              ...
T Consensus       419 ~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  488 (597)
T 2xpi_A          419 IEGEHD----------QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK  488 (597)
T ss_dssp             HHTCHH----------HHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             HcCCHH----------HHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence            888776          56788999999999999999999999988877654333332221111              115


Q ss_pred             CcHHHHHHHHHHHHhh------CCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         191 PTAEDAIANCLKAEEL------APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l------~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      |++++|+++|++++++      +|+....+|..+|.++...|++++|++.++++++++|.++.
T Consensus       489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  551 (597)
T 2xpi_A          489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN  551 (597)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred             CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence            8999999999999998      67223678999999999999999999999999999887664

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.5e-18  Score=156.26  Aligned_cols=176  Identities=14%  Similarity=0.112  Sum_probs=115.5

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------cCcHH---------HHHHHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------ENDKE---------ASEKYILQGIEYAKK  104 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~~~~~---------~~~~~~~~A~~~~~k  104 (259)
                      |++++|+..+++++..+|+++.++..+|.++...|++.+.           +.+..         ...+.+++|+..+++
T Consensus       284 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  363 (514)
T 2gw1_A          284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSE  363 (514)
T ss_dssp             SCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6777777777777777777777777777777766665400           00000         000112355555555


Q ss_pred             HHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChh------HHHHHHHHHHHhhccchHHH
Q psy9159         105 AMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT------LYSLKGRYQYEISKLSFFER  178 (259)
Q Consensus       105 al~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~------~~~~lG~~~~~~~~~~~~~~  178 (259)
                      +++.+|+++.++..+|.++...|++.          .+...++++++++|+++.      ++..+|.++...        
T Consensus       364 ~~~~~~~~~~~~~~la~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~--------  425 (514)
T 2gw1_A          364 AKRKFPEAPEVPNFFAEILTDKNDFD----------KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN--------  425 (514)
T ss_dssp             HHHHSTTCSHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTS--------
T ss_pred             HHHHcccCHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh--------
Confidence            55555555555555555555444443          344555666666665544      566666555440        


Q ss_pred             HHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         179 KIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       179 ~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                               ...|++++|+.+|+++++++| ++..++..+|.++...|++++|++.|+++++++|++++-
T Consensus       426 ---------~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  485 (514)
T 2gw1_A          426 ---------PTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK  485 (514)
T ss_dssp             ---------CCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred             ---------hhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence                     002889999999999999999 779999999999999999999999999999999887654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.78  E-value=1.9e-18  Score=146.95  Aligned_cols=172  Identities=10%  Similarity=-0.026  Sum_probs=137.9

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHH
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPN------DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKK  104 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~k  104 (259)
                      .+.++..+++ .. |++++|+..|.+++...+.      .+.++..+|.+|..+|++.              +|+..+++
T Consensus        39 ~~~~a~~~~~-~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~--------------~A~~~~~~  102 (292)
T 1qqe_A           39 LCVQAATIYR-LR-KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV--------------NAVDSLEN  102 (292)
T ss_dssp             HHHHHHHHHH-HT-TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHH
T ss_pred             HHHHHHHHHH-Hc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH--------------HHHHHHHH
Confidence            4555555553 45 9999999999999987432      2678999999999999875              99999999


Q ss_pred             HHHhCCCC------hHHHHHHHHHHHHh-hchhhHHHHHhcHHHHHHHHHHHHccCCCC------hhHHHHHHHHHHHhh
Q psy9159         105 AMELAPNN------SNTQKWYGICVGAN-GQFQSLKEKIKCGVVFRDQMNKAIQMAPKD------FTLYSLKGRYQYEIS  171 (259)
Q Consensus       105 al~~~P~~------~~~~~~la~~~~~~-~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~------~~~~~~lG~~~~~~~  171 (259)
                      |+++.|+.      +.++..+|.++... |++.          .|+.+|++|+++.|.+      ..++..+|.++... 
T Consensus       103 Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~----------~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-  171 (292)
T 1qqe_A          103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYA----------KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD-  171 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHH----------HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh-
Confidence            99998865      45788889988885 8877          5789999999999875      46788899988875 


Q ss_pred             ccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHH-------hHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         172 KLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKE-------NQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~-------~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                                         |++++|+.+|++++++.| ++..       .+..+|.|+..+|++++|+..|+++++++|.
T Consensus       172 -------------------g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  231 (292)
T 1qqe_A          172 -------------------GQYIEASDIYSKLIKSSM-GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN  231 (292)
T ss_dssp             -------------------TCHHHHHHHHHHHHHTTS-SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred             -------------------CCHHHHHHHHHHHHHHHh-cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence                               889999999999999998 4332       5789999999999999999999999999998


Q ss_pred             Cccch
Q psy9159         245 SYESH  249 (259)
Q Consensus       245 ~~~~~  249 (259)
                      ..+..
T Consensus       232 ~~~~~  236 (292)
T 1qqe_A          232 FADSR  236 (292)
T ss_dssp             -----
T ss_pred             CCCcH
Confidence            77643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.78  E-value=6.9e-18  Score=140.40  Aligned_cols=159  Identities=14%  Similarity=0.093  Sum_probs=133.9

Q ss_pred             hhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhchhhHHH
Q psy9159          58 NNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN---SNTQKWYGICVGANGQFQSLKE  134 (259)
Q Consensus        58 ~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~---~~~~~~la~~~~~~~~~~~~~~  134 (259)
                      ...+|+++++++.+|.++...|++.              +|+..++++++.+|++   +.+++++|.++...|++.    
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~--------------~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~----   69 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYD--------------RAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYL----   69 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHH----
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHH--------------HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHH----
Confidence            4568999999999999999999875              9999999999999999   899999999999999987    


Q ss_pred             HHhcHHHHHHHHHHHHccCCCC---hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc
Q psy9159         135 KIKCGVVFRDQMNKAIQMAPKD---FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW  211 (259)
Q Consensus       135 ~~~~~~~a~~~~~kAl~l~P~~---~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~  211 (259)
                            .|...++++++++|++   +.+++.+|.+++..+..            .....|++++|+..|+++++.+| ++
T Consensus        70 ------~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~------------~~~~~~~~~~A~~~~~~~l~~~p-~~  130 (261)
T 3qky_A           70 ------LAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPP------------YELDQTDTRKAIEAFQLFIDRYP-NH  130 (261)
T ss_dssp             ------HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCC------------TTSCCHHHHHHHHHHHHHHHHCT-TC
T ss_pred             ------HHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccc------------ccccchhHHHHHHHHHHHHHHCc-Cc
Confidence                  5678999999999966   46899999998873210            00113789999999999999999 55


Q ss_pred             HHhH-----------------HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhh
Q psy9159         212 KENQ-----------------LLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLST  253 (259)
Q Consensus       212 ~~~~-----------------~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~  253 (259)
                      ..+.                 +.+|.+|...|++++|+..|+++++..|+++.....+.
T Consensus       131 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~  189 (261)
T 3qky_A          131 ELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALV  189 (261)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHH
Confidence            5555                 88999999999999999999999999998776554443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.77  E-value=8.2e-19  Score=133.23  Aligned_cols=122  Identities=11%  Similarity=0.066  Sum_probs=110.0

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHH
Q psy9159         100 EYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERK  179 (259)
Q Consensus       100 ~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~  179 (259)
                      ..++++++++|+++.+++.+|.++...|++.          .+...++++++++|+++.+|+.+|.++...         
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------   65 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWD----------DAQKIFQALCMLDHYDARYFLGLGACRQSL---------   65 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHH----------HHHHHHHHHHHhCCccHHHHHHHHHHHHHH---------
Confidence            4678899999999999999999999999887          567899999999999999999999999875         


Q ss_pred             HHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         180 IAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       180 ~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                                 |++++|+.+|+++++++| +++.+++++|.+|..+|++++|+++|+++++++|.+++...+.
T Consensus        66 -----------g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  126 (142)
T 2xcb_A           66 -----------GLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA  126 (142)
T ss_dssp             -----------TCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             -----------hhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence                       889999999999999999 7899999999999999999999999999999999988766543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.76  E-value=2.2e-18  Score=132.27  Aligned_cols=119  Identities=16%  Similarity=0.056  Sum_probs=109.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhh
Q psy9159          52 NLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQS  131 (259)
Q Consensus        52 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~  131 (259)
                      ..+++++..+|+++++++.+|.++...|++.              +|+..++++++++|+++.+|..+|.++...|++. 
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~--------------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-   72 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYE--------------DAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD-   72 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChH--------------HHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHH-
Confidence            4578899999999999999999999999876              9999999999999999999999999999999987 


Q ss_pred             HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc
Q psy9159         132 LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW  211 (259)
Q Consensus       132 ~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~  211 (259)
                               .|...++++++++|+++.+++.+|.++...                    |++++|+.+|+++++++| ++
T Consensus        73 ---------~A~~~~~~al~l~p~~~~~~~~lg~~~~~~--------------------g~~~~A~~~~~~al~~~p-~~  122 (148)
T 2vgx_A           73 ---------LAIHSYSYGAVMDIXEPRFPFHAAECLLQX--------------------GELAEAESGLFLAQELIA-NX  122 (148)
T ss_dssp             ---------HHHHHHHHHHHHSTTCTHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHT-TC
T ss_pred             ---------HHHHHHHHHHhcCCCCchHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHCc-CC
Confidence                     567899999999999999999999999875                    889999999999999999 55


Q ss_pred             HHhH
Q psy9159         212 KENQ  215 (259)
Q Consensus       212 ~~~~  215 (259)
                      +...
T Consensus       123 ~~~~  126 (148)
T 2vgx_A          123 PEFX  126 (148)
T ss_dssp             GGGH
T ss_pred             Ccch
Confidence            5543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.76  E-value=3.7e-17  Score=139.77  Aligned_cols=169  Identities=8%  Similarity=-0.071  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChH-HHHHHHHHHH
Q psy9159          47 KAKAYNLTMELNN-KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSN-TQKWYGICVG  124 (259)
Q Consensus        47 ~~~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~-~~~~la~~~~  124 (259)
                      +++|+..|+++++ .+|+++.+|..+|.++...|+..              +|+..|+++++++|+++. +|..+|.++.
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~--------------~A~~~~~~al~~~p~~~~~~~~~~~~~~~  145 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE--------------KVHSIYNRLLAIEDIDPTLVYIQYMKFAR  145 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHTSSSSCTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH--------------HHHHHHHHHHhccccCccHHHHHHHHHHH
Confidence            3899999999999 69999999999999999988765              899999999999998887 8888888888


Q ss_pred             HhhchhhHHHHH-------------------------hcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHH
Q psy9159         125 ANGQFQSLKEKI-------------------------KCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERK  179 (259)
Q Consensus       125 ~~~~~~~~~~~~-------------------------~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~  179 (259)
                      ..|++..+...+                         +....+...|+++++++|+++.+|..+|.++..          
T Consensus       146 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----------  215 (308)
T 2ond_A          146 RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----------  215 (308)
T ss_dssp             HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----------
T ss_pred             HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----------
Confidence            777765321100                         111233344444444444444444444444332          


Q ss_pred             HHHHHhcCCCCCcHHHHHHHHHHHHhh---CCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159         180 IAVLIVSDLDEPTAEDAIANCLKAEEL---APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       180 ~~~~~~~~~~~g~~~eAi~~~~kAi~l---~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~  249 (259)
                                .|++++|+..|+++++.   +|++....|..++..+...|+.++|...++++++..|++.++.
T Consensus       216 ----------~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~  278 (308)
T 2ond_A          216 ----------LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGK  278 (308)
T ss_dssp             ----------TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSC
T ss_pred             ----------CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccc
Confidence                      48999999999999995   6633577899999999999999999999999999999877654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.76  E-value=9.3e-18  Score=151.14  Aligned_cols=166  Identities=17%  Similarity=0.077  Sum_probs=152.9

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      ..+..++  .. |++++|+..++++++.+|+ +.++..+|.++...|++.              +|+..+++++.++|++
T Consensus       242 ~~~~~~~--~~-~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~--------------~A~~~~~~~~~~~~~~  303 (514)
T 2gw1_A          242 HTGIFKF--LK-NDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDST--------------EYYNYFDKALKLDSNN  303 (514)
T ss_dssp             HHHHHHH--HS-SCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCT--------------TGGGHHHHHHTTCTTC
T ss_pred             HHHHHHH--HC-CCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHH--------------HHHHHHHHHhhcCcCC
Confidence            3444455  55 9999999999999999999 999999999999999886              9999999999999999


Q ss_pred             hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCc
Q psy9159         113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPT  192 (259)
Q Consensus       113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~  192 (259)
                      +.++..+|.++...|++.          .+...++++++++|+++.++..+|.++...                    |+
T Consensus       304 ~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------~~  353 (514)
T 2gw1_A          304 SSVYYHRGQMNFILQNYD----------QAGKDFDKAKELDPENIFPYIQLACLAYRE--------------------NK  353 (514)
T ss_dssp             THHHHHHHHHHHHTTCTT----------HHHHHHHHHHHTCSSCSHHHHHHHHHTTTT--------------------TC
T ss_pred             HHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHhChhhHHHHHHHHHHHHHc--------------------CC
Confidence            999999999999999887          567899999999999999999999988764                    88


Q ss_pred             HHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         193 AEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       193 ~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      +++|+.+|+++++.+| ++..++..+|.++...|++++|++.+++++++.|.+++
T Consensus       354 ~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  407 (514)
T 2gw1_A          354 FDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG  407 (514)
T ss_dssp             HHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch
Confidence            9999999999999999 77899999999999999999999999999999988765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.76  E-value=1.1e-18  Score=151.59  Aligned_cols=152  Identities=14%  Similarity=0.058  Sum_probs=138.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC------------
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN------------  112 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~------------  112 (259)
                      +++++|++.+++++..+|+++.++..+|.++...|++.              +|+..|+++++++|++            
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~--------------~A~~~y~~Al~~~p~~~~~~~~~~~~~~  192 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYK--------------QALLQYKKIVSWLEYESSFSNEEAQKAQ  192 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHHTTTCCCCCSHHHHHHH
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHHhhccccCChHHHHHHH
Confidence            56778888888888899999999999999999999875              9999999999999999            


Q ss_pred             ---hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159         113 ---SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD  189 (259)
Q Consensus       113 ---~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~  189 (259)
                         ..++.++|.++...|++.          .|+..++++|+++|+++.+++.+|.++..+                   
T Consensus       193 ~~~~~~~~nla~~~~~~g~~~----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-------------------  243 (336)
T 1p5q_A          193 ALRLASHLNLAMCHLKLQAFS----------AAIESCNKALELDSNNEKGLSRRGEAHLAV-------------------  243 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-------------------
T ss_pred             HHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-------------------
Confidence               599999999999999987          577999999999999999999999999885                   


Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHH-HHHHHHHhcC
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKA-VQWLDKAKAI  241 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA-~~~~~kal~l  241 (259)
                       |++++|+.+|++|++++| ++..++..+|.++..+|++++| ...|++.+..
T Consensus       244 -g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          244 -NDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             -TCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             889999999999999999 7899999999999999999999 5577776643

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.76  E-value=1e-17  Score=135.38  Aligned_cols=135  Identities=14%  Similarity=0.128  Sum_probs=118.8

Q ss_pred             CCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH----------------HHHHHHHh
Q psy9159          63 NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKW----------------YGICVGAN  126 (259)
Q Consensus        63 ~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~----------------la~~~~~~  126 (259)
                      .+++.++..|..+...|++.              +|+..++++++++|+++.++++                +|.++...
T Consensus         2 ~~~~~~~~~g~~~~~~g~~~--------------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~   67 (208)
T 3urz_A            2 QSVDEMLQKVSAAIEAGQNG--------------QAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN   67 (208)
T ss_dssp             -CHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC
Confidence            36788899999999999875              9999999999999999999999                99999999


Q ss_pred             hchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q psy9159         127 GQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL  206 (259)
Q Consensus       127 ~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l  206 (259)
                      |++.          .|...++++++++|+++.+++.+|.++...                    |++++|+.+|++++++
T Consensus        68 g~~~----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------------g~~~~A~~~~~~al~~  117 (208)
T 3urz_A           68 RNYD----------KAYLFYKELLQKAPNNVDCLEACAEMQVCR--------------------GQEKDALRMYEKILQL  117 (208)
T ss_dssp             TCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHH
T ss_pred             CCHH----------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHc
Confidence            9887          577999999999999999999999999886                    8899999999999999


Q ss_pred             CCCCcHHhHHHHHHHHHHhCC--HHHHHHHHHHHhcCC
Q psy9159         207 APAPWKENQLLIAKCYIEAGE--YAKAVQWLDKAKAIP  242 (259)
Q Consensus       207 ~P~~~~~~~~~la~~~~~~g~--~~eA~~~~~kal~l~  242 (259)
                      +| +++.+++++|.+|...|+  .+.+...+++++..+
T Consensus       118 ~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~  154 (208)
T 3urz_A          118 EA-DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT  154 (208)
T ss_dssp             CT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC
T ss_pred             CC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCC
Confidence            99 789999999999987764  556788888886544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.75  E-value=9e-17  Score=118.07  Aligned_cols=135  Identities=25%  Similarity=0.357  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHH
Q psy9159          66 DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQ  145 (259)
Q Consensus        66 ~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~  145 (259)
                      ++++.+|.++...|++.              +|+..++++++.+|+++.++..+|.++...+++.          .+...
T Consensus         2 ~~~~~l~~~~~~~~~~~--------------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----------~A~~~   57 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYD--------------EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD----------EAIEY   57 (136)
T ss_dssp             HHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH----------HHHHH
T ss_pred             cHHHHHHHHHHHcCcHH--------------HHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHH----------HHHHH
Confidence            56788999999988865              9999999999999999999999999999888876          56788


Q ss_pred             HHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHh
Q psy9159         146 MNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEA  225 (259)
Q Consensus       146 ~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~  225 (259)
                      ++++++++|+++.+++.+|.++...                    |++++|+.+++++++..| ....++..+|.++...
T Consensus        58 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------------~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~  116 (136)
T 2fo7_A           58 YQKALELDPRSAEAWYNLGNAYYKQ--------------------GDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQ  116 (136)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTT--------------------TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHHh--------------------cCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHH
Confidence            9999999999999999999988764                    889999999999999999 6788999999999999


Q ss_pred             CCHHHHHHHHHHHhcCCCCC
Q psy9159         226 GEYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       226 g~~~eA~~~~~kal~l~p~~  245 (259)
                      |++++|++.++++++++|.+
T Consensus       117 ~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          117 GDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TCHHHHHHHHHHHHHHSTTC
T ss_pred             ccHHHHHHHHHHHHccCCCC
Confidence            99999999999999998863

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.75  E-value=9.3e-18  Score=127.34  Aligned_cols=131  Identities=11%  Similarity=0.033  Sum_probs=113.4

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhh
Q psy9159          52 NLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQS  131 (259)
Q Consensus        52 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~  131 (259)
                      ..+++++..+|+++++++.+|.++...|++.              +|+..+++++.++|+++.+|..+|.++...|++. 
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~--------------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-   69 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWD--------------DAQKIFQALCMLDHYDARYFLGLGACRQSLGLYE-   69 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHH--------------HHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHH-
Confidence            4678889999999999999999999999875              9999999999999999999999999999999887 


Q ss_pred             HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc
Q psy9159         132 LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW  211 (259)
Q Consensus       132 ~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~  211 (259)
                               .|...++++++++|+++.+++.+|.++...                    |++++|+.+|+++++++| ++
T Consensus        70 ---------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------------g~~~~A~~~~~~al~~~p-~~  119 (142)
T 2xcb_A           70 ---------QALQSYSYGALMDINEPRFPFHAAECHLQL--------------------GDLDGAESGFYSARALAA-AQ  119 (142)
T ss_dssp             ---------HHHHHHHHHHHHCTTCTHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHH-TC
T ss_pred             ---------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCC-CC
Confidence                     577999999999999999999999999875                    889999999999999999 66


Q ss_pred             HHhHHHHHHHHHHhCC
Q psy9159         212 KENQLLIAKCYIEAGE  227 (259)
Q Consensus       212 ~~~~~~la~~~~~~g~  227 (259)
                      +.....+..+...++.
T Consensus       120 ~~~~~~~~~~~~~l~~  135 (142)
T 2xcb_A          120 PAHEALAARAGAMLEA  135 (142)
T ss_dssp             GGGHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHH
Confidence            6665555555544443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.75  E-value=1e-16  Score=131.71  Aligned_cols=164  Identities=14%  Similarity=0.103  Sum_probs=140.1

Q ss_pred             hcCCCC-HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHh
Q psy9159          59 NKQPND-PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIK  137 (259)
Q Consensus        59 ~~~p~~-~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~  137 (259)
                      ..+|.+ +.+++.+|.++...|++.              +|+..++++++.+|+++.++..+|.++...|++.       
T Consensus        30 ~~~~~~~~~~~~~~a~~~~~~~~~~--------------~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~-------   88 (252)
T 2ho1_A           30 DKGRDEARDAYIQLGLGYLQRGNTE--------------QAKVPLRKALEIDPSSADAHAALAVVFQTEMEPK-------   88 (252)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCTG--------------GGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-------
T ss_pred             ccchHHHHHHHHHHHHHHHHcCChH--------------HHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHH-------
Confidence            346666 889999999999999886              9999999999999999999999999999999887       


Q ss_pred             cHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHh--cCC--------------CCCcHHHHHHHHH
Q psy9159         138 CGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIV--SDL--------------DEPTAEDAIANCL  201 (259)
Q Consensus       138 ~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~--~~~--------------~~g~~~eAi~~~~  201 (259)
                         .+.+.++++++++|+++.++..+|.++...++.....+.+..++.  ..+              ..|++++|+.+|+
T Consensus        89 ---~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  165 (252)
T 2ho1_A           89 ---LADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFE  165 (252)
T ss_dssp             ---HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence               567899999999999999999999999988776544333333222  111              1699999999999


Q ss_pred             HHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         202 KAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       202 kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      ++++++| .+..++..+|.++...|++++|++.++++++..|.+.+
T Consensus       166 ~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  210 (252)
T 2ho1_A          166 KSLRLNR-NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR  210 (252)
T ss_dssp             HHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHH
T ss_pred             HHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence            9999999 77899999999999999999999999999999987654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.73  E-value=3.9e-17  Score=127.85  Aligned_cols=131  Identities=15%  Similarity=0.126  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHH-HHHh
Q psy9159          92 EKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY-QYEI  170 (259)
Q Consensus        92 ~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~-~~~~  170 (259)
                      .+.+++|+..++++++.+|+++.++..+|.++...|++.          .+...++++++++|+++.++..+|.+ +...
T Consensus        23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~la~~l~~~~   92 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYS----------NSLLAYRQALQLRGENAELYAALATVLYYQA   92 (177)
T ss_dssp             ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            344569999999999999999999999999999999887          56789999999999999999999998 5553


Q ss_pred             hccchHHHHHHHHHhcCCCCCcH--HHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         171 SKLSFFERKIAVLIVSDLDEPTA--EDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~g~~--~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                                          |++  ++|+.+|+++++++| ++..+++.+|.++...|++++|+..++++++++|.+++-
T Consensus        93 --------------------~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  151 (177)
T 2e2e_A           93 --------------------SQHMTAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR  151 (177)
T ss_dssp             --------------------TTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred             --------------------CCcchHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence                                778  999999999999999 778999999999999999999999999999999998765


Q ss_pred             hhhhh
Q psy9159         249 HDLST  253 (259)
Q Consensus       249 ~~~~~  253 (259)
                      ..+..
T Consensus       152 ~~~~~  156 (177)
T 2e2e_A          152 TQLVE  156 (177)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=2.4e-16  Score=146.02  Aligned_cols=168  Identities=8%  Similarity=0.017  Sum_probs=148.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      ..-++|++.+.+++..+|++..+|+..+.++..+|+..    +.+.....++++++.+.++++.+|++..+|.+.++++.
T Consensus        43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~----~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~  118 (567)
T 1dce_A           43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEK----SPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  118 (567)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhccccc----chhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45578899999999999999999999999999988632    23445666789999999999999999999999999999


Q ss_pred             Hhhc--hhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCC-cHHHHHHHHH
Q psy9159         125 ANGQ--FQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEP-TAEDAIANCL  201 (259)
Q Consensus       125 ~~~~--~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~eAi~~~~  201 (259)
                      .++.  +.          ++.+.+++++++||.|..+|..+|.+....                    | .+++++++++
T Consensus       119 ~l~~~~~~----------~el~~~~k~l~~d~~N~~aW~~R~~~l~~l--------------------~~~~~~el~~~~  168 (567)
T 1dce_A          119 RLPEPNWA----------RELELCARFLEADERNFHCWDYRRFVAAQA--------------------AVAPAEELAFTD  168 (567)
T ss_dssp             TCSSCCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------CCCHHHHHHHHH
T ss_pred             HcccccHH----------HHHHHHHHHHhhccccccHHHHHHHHHHHc--------------------CCChHHHHHHHH
Confidence            9883  34          467899999999999999999999887764                    5 7899999999


Q ss_pred             HHHhhCCCCcHHhHHHHHHHHHHh--------------CCHHHHHHHHHHHhcCCCCCcc
Q psy9159         202 KAEELAPAPWKENQLLIAKCYIEA--------------GEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       202 kAi~l~P~~~~~~~~~la~~~~~~--------------g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      ++++.+| .+..+|.+++.++..+              +++++|++++++|+.++|++..
T Consensus       169 ~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s  227 (567)
T 1dce_A          169 SLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS  227 (567)
T ss_dssp             TTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred             HHHHHCC-CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence            9999999 7899999999999986              6689999999999999998764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.72  E-value=4e-17  Score=127.76  Aligned_cols=136  Identities=13%  Similarity=0.128  Sum_probs=116.8

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA  109 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~  109 (259)
                      ..+..+..++  .. |++++|+..++++++.+|+++.+++.+|.+|...|++.              +|+.+++++++++
T Consensus        12 ~~~~~~~~~~--~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~--------------~A~~~~~~al~~~   74 (177)
T 2e2e_A           12 RQRDPLHQFA--SQ-QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYS--------------NSLLAYRQALQLR   74 (177)
T ss_dssp             CSSTTTCCCC--------CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHH
T ss_pred             HHhhhhhhhh--hc-cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHcC
Confidence            3444555555  56 99999999999999999999999999999999999875              9999999999999


Q ss_pred             CCChHHHHHHHHH-HHHhhch--hhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhc
Q psy9159         110 PNNSNTQKWYGIC-VGANGQF--QSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVS  186 (259)
Q Consensus       110 P~~~~~~~~la~~-~~~~~~~--~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~  186 (259)
                      |+++.++..+|.+ +...|++  .          .+...++++++++|+++.+++.+|.++...                
T Consensus        75 p~~~~~~~~la~~l~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------------  128 (177)
T 2e2e_A           75 GENAELYAALATVLYYQASQHMTA----------QTRAMIDKALALDSNEITALMLLASDAFMQ----------------  128 (177)
T ss_dssp             CSCHHHHHHHHHHHHHHTTTCCCH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----------------
T ss_pred             CCCHHHHHHHHHHHHHhcCCcchH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----------------
Confidence            9999999999999 6677776  5          567899999999999999999999999875                


Q ss_pred             CCCCCcHHHHHHHHHHHHhhCCCCcHH
Q psy9159         187 DLDEPTAEDAIANCLKAEELAPAPWKE  213 (259)
Q Consensus       187 ~~~~g~~~eAi~~~~kAi~l~P~~~~~  213 (259)
                          |++++|+.+|+++++++| .+..
T Consensus       129 ----g~~~~A~~~~~~al~~~p-~~~~  150 (177)
T 2e2e_A          129 ----ANYAQAIELWQKVMDLNS-PRIN  150 (177)
T ss_dssp             ----TCHHHHHHHHHHHHHTCC-TTSC
T ss_pred             ----ccHHHHHHHHHHHHhhCC-CCcc
Confidence                889999999999999999 5443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.71  E-value=1.7e-16  Score=123.24  Aligned_cols=139  Identities=10%  Similarity=0.079  Sum_probs=127.8

Q ss_pred             CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHH
Q psy9159          64 DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFR  143 (259)
Q Consensus        64 ~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~  143 (259)
                      ...+++.+|.++...|++.              +|+..++++++.+|+++.++..+|.++...|++.          .+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~--------------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~A~   62 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYS--------------QAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVD----------RGT   62 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHH--------------HHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHH----------HHH
T ss_pred             hhHHHHHHHHHHHHhcCHH--------------HHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHH----------HHH
Confidence            4677888999999988875              9999999999999999999999999999998887          567


Q ss_pred             HHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHH
Q psy9159         144 DQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYI  223 (259)
Q Consensus       144 ~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~  223 (259)
                      ..++++++++|+++.++..+|.++...                    |++++|+.+++++++.+| .+..++..+|.++.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~a~~~~~~--------------------~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~  121 (186)
T 3as5_A           63 ELLERSLADAPDNVKVATVLGLTYVQV--------------------QKYDLAVPLLIKVAEANP-INFNVRFRLGVALD  121 (186)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHh--------------------cCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHH
Confidence            899999999999999999999998875                    789999999999999999 77899999999999


Q ss_pred             HhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         224 EAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       224 ~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      ..|++++|++.++++++..|.++.
T Consensus       122 ~~~~~~~A~~~~~~~~~~~~~~~~  145 (186)
T 3as5_A          122 NLGRFDEAIDSFKIALGLRPNEGK  145 (186)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HcCcHHHHHHHHHHHHhcCccchH
Confidence            999999999999999999987753

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.71  E-value=1.8e-16  Score=129.79  Aligned_cols=159  Identities=12%  Similarity=0.019  Sum_probs=132.7

Q ss_pred             CCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHH
Q psy9159          63 NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVF  142 (259)
Q Consensus        63 ~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a  142 (259)
                      +.++++..+|.++...|++.              +|+..++++++.+ +++.++..+|.++...|++.          .+
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~--------------~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~----------~A   57 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFD--------------EAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYE----------TA   57 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHH----------HH
T ss_pred             hHHHHHHHHHHHHHHhccHH--------------HHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHH----------HH
Confidence            45788999999999999875              9999999999999 99999999999999999887          56


Q ss_pred             HHHHHHHHccCCCC-------hhHHHHHHHHHHHhhccchHHHHHHHHHh--------------------------cC--
Q psy9159         143 RDQMNKAIQMAPKD-------FTLYSLKGRYQYEISKLSFFERKIAVLIV--------------------------SD--  187 (259)
Q Consensus       143 ~~~~~kAl~l~P~~-------~~~~~~lG~~~~~~~~~~~~~~~~~~~~~--------------------------~~--  187 (259)
                      ...++++++++|++       +.++..+|.++...++.......+..++-                          ..  
T Consensus        58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  137 (258)
T 3uq3_A           58 ISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPE  137 (258)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcc
Confidence            78889999999987       78999999999888765422211111111                          00  


Q ss_pred             ------------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         188 ------------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       188 ------------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                                  ...|++++|+.+|+++++++| .+..++..+|.++...|++++|++.++++++++|.+++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~  208 (258)
T 3uq3_A          138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR  208 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHH
Confidence                        126999999999999999999 77899999999999999999999999999999988764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.71  E-value=2.4e-16  Score=133.76  Aligned_cols=154  Identities=8%  Similarity=-0.046  Sum_probs=132.5

Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q psy9159          46 DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGA  125 (259)
Q Consensus        46 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~  125 (259)
                      ..+.....+...+   |++++.++.+|..+...|++.              +|+..++++++++|+++.++..+|.++..
T Consensus       101 ~~~~l~~~l~~~l---p~~~~~~~~~a~~~~~~g~~~--------------~A~~~~~~al~~~P~~~~a~~~la~~~~~  163 (287)
T 3qou_A          101 PEEAIRALLDXVL---PREEELXAQQAMQLMQESNYT--------------DALPLLXDAWQLSNQNGEIGLLLAETLIA  163 (287)
T ss_dssp             CHHHHHHHHHHHS---CCHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHc---CCchhhHHHHHHHHHhCCCHH--------------HHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence            3444444555543   999999999999999999875              99999999999999999999999999999


Q ss_pred             hhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHh
Q psy9159         126 NGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEE  205 (259)
Q Consensus       126 ~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~  205 (259)
                      .|++.          +|...+++++.++|+....+...+..+...                    ++.++|+..|+++++
T Consensus       164 ~g~~~----------~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~--------------------~~~~~a~~~l~~al~  213 (287)
T 3qou_A          164 LNRSE----------DAEAVLXTIPLQDQDTRYQGLVAQIELLXQ--------------------AADTPEIQQLQQQVA  213 (287)
T ss_dssp             TTCHH----------HHHHHHTTSCGGGCSHHHHHHHHHHHHHHH--------------------HTSCHHHHHHHHHHH
T ss_pred             CCCHH----------HHHHHHHhCchhhcchHHHHHHHHHHHHhh--------------------cccCccHHHHHHHHh
Confidence            99987          567899999999997665556565555443                    557889999999999


Q ss_pred             hCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         206 LAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       206 l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      ++| ++..+++++|.+|...|++++|++.|+++++.+|++.+
T Consensus       214 ~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~  254 (287)
T 3qou_A          214 ENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAAD  254 (287)
T ss_dssp             HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG
T ss_pred             cCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence            999 78999999999999999999999999999999998743

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.70  E-value=3e-16  Score=115.98  Aligned_cols=118  Identities=15%  Similarity=0.072  Sum_probs=97.3

Q ss_pred             CCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHH
Q psy9159          62 PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVV  141 (259)
Q Consensus        62 p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~  141 (259)
                      |.+++.++.+|..+...|++.              +|+..++++++++|+++.++..+|.++...|++.          .
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~--------------~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~----------~   56 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWP--------------NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFP----------E   56 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------H
T ss_pred             CchHHHHHHHHHHHHHhcCHH--------------HHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHH----------H
Confidence            455778888888888888765              8888899999999988888888888888888876          4


Q ss_pred             HHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC------CCCcHHhH
Q psy9159         142 FRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA------PAPWKENQ  215 (259)
Q Consensus       142 a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~------P~~~~~~~  215 (259)
                      +...++++++++|+++.+|+.+|.++...                    |++++|+.+|+++++++      | ++..++
T Consensus        57 A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------------~~~~~A~~~~~~al~~~p~~~~~p-~~~~~~  115 (126)
T 3upv_A           57 AIADCNKAIEKDPNFVRAYIRKATAQIAV--------------------KEYASALETLDAARTKDAEVNNGS-SAREID  115 (126)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHHHTTT-THHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHH--------------------hCHHHHHHHHHHHHHhCcccCCch-hHHHHH
Confidence            67888888888898888888888888774                    77888899999998888      8 667777


Q ss_pred             HHHHHHHHH
Q psy9159         216 LLIAKCYIE  224 (259)
Q Consensus       216 ~~la~~~~~  224 (259)
                      ..++.+...
T Consensus       116 ~~l~~~~~~  124 (126)
T 3upv_A          116 QLYYKASQQ  124 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777777654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.70  E-value=3.7e-17  Score=128.41  Aligned_cols=142  Identities=11%  Similarity=0.063  Sum_probs=119.7

Q ss_pred             CCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHH
Q psy9159          61 QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGV  140 (259)
Q Consensus        61 ~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~  140 (259)
                      +|...+.++.+|.++...|++.              +|+..++++++++|+++.++..+|.++...|++.          
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~--------------~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~----------   57 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHA--------------QALNVIQTLSDELQSRGDVKLAKADCLLETKQFE----------   57 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHH--------------HHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHH----------
T ss_pred             CCCHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHH----------
Confidence            4566677889999999999875              9999999999999999999999999999999887          


Q ss_pred             HHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHH
Q psy9159         141 VFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAK  220 (259)
Q Consensus       141 ~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~  220 (259)
                      .+...++++++++| ++.++..+|.+.....                   +...+|+.+++++++++| +++.+++.+|.
T Consensus        58 ~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~-------------------~~~~~a~~~~~~al~~~P-~~~~~~~~la~  116 (176)
T 2r5s_A           58 LAQELLATIPLEYQ-DNSYKSLIAKLELHQQ-------------------AAESPELKRLEQELAANP-DNFELACELAV  116 (176)
T ss_dssp             HHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH-------------------HTSCHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred             HHHHHHHHhhhccC-ChHHHHHHHHHHHHhh-------------------cccchHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence            56789999999999 8877776665533210                   123458999999999999 78999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         221 CYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       221 ~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      ++...|++++|+..|+++++++|...+
T Consensus       117 ~~~~~g~~~~A~~~~~~~l~~~p~~~~  143 (176)
T 2r5s_A          117 QYNQVGRDEEALELLWNILKVNLGAQD  143 (176)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred             HHHHcccHHHHHHHHHHHHHhCcccCh
Confidence            999999999999999999999997644

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.70  E-value=1.5e-16  Score=131.78  Aligned_cols=163  Identities=13%  Similarity=0.051  Sum_probs=138.5

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHH
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNK--------QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAK  103 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~  103 (259)
                      ...+..++  .. |++++|+..+++++..        +|..+.++..+|.+|...|++.              +|+.+++
T Consensus        47 ~~l~~~~~--~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------------~A~~~~~  109 (283)
T 3edt_B           47 NILALVYR--DQ-NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK--------------EAEPLCK  109 (283)
T ss_dssp             HHHHHHHH--HT-TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHH--------------HHHHHHH
T ss_pred             HHHHHHHH--Hc-ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHH--------------HHHHHHH
Confidence            34454555  56 9999999999999976        5777889999999999999875              8888888


Q ss_pred             HHHHh--------CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHcc--------CCCChhHHHHHHHHH
Q psy9159         104 KAMEL--------APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM--------APKDFTLYSLKGRYQ  167 (259)
Q Consensus       104 kal~~--------~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l--------~P~~~~~~~~lG~~~  167 (259)
                      +++++        +|....++..+|.++...|++.          .|...+++++++        +|....++..+|.++
T Consensus       110 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  179 (283)
T 3edt_B          110 RALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE----------EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY  179 (283)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH----------HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            88888        5778888999999999999887          467888888888        778888999999999


Q ss_pred             HHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh-----------------------------------------
Q psy9159         168 YEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL-----------------------------------------  206 (259)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l-----------------------------------------  206 (259)
                      ...                    |++++|+.+|++++++                                         
T Consensus       180 ~~~--------------------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (283)
T 3edt_B          180 LKQ--------------------GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS  239 (283)
T ss_dssp             HHH--------------------TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------
T ss_pred             HHc--------------------CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            886                    7789999999999886                                         


Q ss_pred             --------CCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         207 --------APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       207 --------~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                              .| ....++..+|.+|..+|++++|++++++++++.
T Consensus       240 ~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          240 WYKACKVDSP-TVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             ---CCCCCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHhcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence                    24 445678999999999999999999999999864

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.70  E-value=5.7e-16  Score=124.22  Aligned_cols=135  Identities=16%  Similarity=0.059  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHH
Q psy9159          65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRD  144 (259)
Q Consensus        65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~  144 (259)
                      ...++.+|.++...|++.              +|+..+++++  +| ++.++..+|.++...|++.          .|..
T Consensus         6 ~~~~~~~g~~~~~~~~~~--------------~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~----------~A~~   58 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWK--------------GALDAFSAVQ--DP-HSRICFNIGCMYTILKNMT----------EAEK   58 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHH--------------HHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHH----------HHHH
T ss_pred             HHHHHHHHHHHHHhCCHH--------------HHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHH----------HHHH
Confidence            345678899999988875              9999999995  45 7899999999999999887          5678


Q ss_pred             HHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcH------------
Q psy9159         145 QMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWK------------  212 (259)
Q Consensus       145 ~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~------------  212 (259)
                      .++++++++|+++.+++.+|.++...                    |++++|+.+|++++++.| .+.            
T Consensus        59 ~~~~al~~~~~~~~~~~~lg~~~~~~--------------------~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~  117 (213)
T 1hh8_A           59 AFTRSINRDKHLAVAYFQRGMLYYQT--------------------EKYDLAIKDLKEALIQLR-GNQLIDYKILGLQFK  117 (213)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHTTT-TCSEEECGGGTBCCE
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHHc--------------------ccHHHHHHHHHHHHHhCC-CccHHHHHHhccccC
Confidence            99999999999999999999999875                    889999999999999988 545            


Q ss_pred             ----HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         213 ----ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       213 ----~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                          .+++++|.++..+|++++|++.++++++++|.+..
T Consensus       118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          118 LFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             EEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             ccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence                88999999999999999999999999999997643

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.70  E-value=7e-16  Score=118.32  Aligned_cols=134  Identities=13%  Similarity=0.151  Sum_probs=119.0

Q ss_pred             CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHH
Q psy9159          64 DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFR  143 (259)
Q Consensus        64 ~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~  143 (259)
                      .+..++.+|.++...|++.              +|+..++++++++|+++.++..+|.++...|++.          .+.
T Consensus        12 ~~~~~~~~a~~~~~~~~~~--------------~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~----------~A~   67 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYE--------------NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG----------YAL   67 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH----------HHH
T ss_pred             HHHHHHHHHHHHHHccCHH--------------HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH----------HHH
Confidence            3577888999999888875              9999999999999999999999999999999887          567


Q ss_pred             HHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHH--HH
Q psy9159         144 DQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIA--KC  221 (259)
Q Consensus       144 ~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la--~~  221 (259)
                      ..++++++++|+++.+++.+|.++...                    |++++|+.+|+++++++| .+..++..++  ..
T Consensus        68 ~~~~~a~~~~~~~~~~~~~~a~~~~~~--------------------~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~  126 (166)
T 1a17_A           68 GDATRAIELDKKYIKGYYRRAASNMAL--------------------GKFRAALRDYETVVKVKP-HDKDAKMKYQECNK  126 (166)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence            899999999999999999999998875                    889999999999999999 6777775555  44


Q ss_pred             HHHhCCHHHHHHHHHHHhcCC
Q psy9159         222 YIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       222 ~~~~g~~~eA~~~~~kal~l~  242 (259)
                      +...|++++|++.+.++..+.
T Consensus       127 ~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A          127 IVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccchHHHh
Confidence            888999999999999987654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.70  E-value=1.9e-15  Score=130.51  Aligned_cols=170  Identities=8%  Similarity=-0.002  Sum_probs=147.4

Q ss_pred             CCHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy9159          45 DDKA-KAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV  123 (259)
Q Consensus        45 ~~~~-~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~  123 (259)
                      |.+. +|++.+.+++..+|++..+|+..+.+...++...    +.+.....+++++..+.+++..+|.+..+|.+.++++
T Consensus        43 ~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~----~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL  118 (331)
T 3dss_A           43 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEK----SPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  118 (331)
T ss_dssp             TCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccc----cchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            5554 8999999999999999999999999999887632    2334566688999999999999999999999999999


Q ss_pred             HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCc-HHHHHHHHHH
Q psy9159         124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPT-AEDAIANCLK  202 (259)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~eAi~~~~k  202 (259)
                      ..++...        ...+...++++++++|.|..+|+..|.+....                    |+ ++++++++++
T Consensus       119 ~~l~~~~--------~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l--------------------~~~~~eel~~~~~  170 (331)
T 3dss_A          119 SRLPEPN--------WARELELCARFLEADERNFHCWDYRRFVAAQA--------------------AVAPAEELAFTDS  170 (331)
T ss_dssp             HHCSSCC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCCHHHHHHHHHH
T ss_pred             hccCccc--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------------------CcCHHHHHHHHHH
Confidence            9887421        11457889999999999999999999877664                    55 6999999999


Q ss_pred             HHhhCCCCcHHhHHHHHHHHHHh--------------CCHHHHHHHHHHHhcCCCCCcc
Q psy9159         203 AEELAPAPWKENQLLIAKCYIEA--------------GEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       203 Ai~l~P~~~~~~~~~la~~~~~~--------------g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      +++.+| .+..+|.+++.++..+              +.++++++++++++.++|+|..
T Consensus       171 ~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S  228 (331)
T 3dss_A          171 LITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS  228 (331)
T ss_dssp             HHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence            999999 7899999999999988              5689999999999999999865

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.70  E-value=4.5e-16  Score=119.97  Aligned_cols=113  Identities=13%  Similarity=0.010  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHH
Q psy9159          89 EASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQY  168 (259)
Q Consensus        89 ~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~  168 (259)
                      .++.+.+++|+..++++++++|+++++|.++|.++..++++......++...+|+..|++||+++|+++.+|+.+|.+|.
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999887777777889999999999999999999999999998


Q ss_pred             Hhhcc-chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcH
Q psy9159         169 EISKL-SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWK  212 (259)
Q Consensus       169 ~~~~~-~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~  212 (259)
                      +.+.+ +....+          .|++++|+.+|++|++++| ++.
T Consensus        92 ~lg~l~P~~~~a----------~g~~~eA~~~~~kAl~l~P-~~~  125 (158)
T 1zu2_A           92 SFAFLTPDETEA----------KHNFDLATQFFQQAVDEQP-DNT  125 (158)
T ss_dssp             HHHHHCCCHHHH----------HHHHHHHHHHHHHHHHHCT-TCH
T ss_pred             HhcccCcchhhh----------hccHHHHHHHHHHHHHhCC-CCH
Confidence            87532 000000          1689999999999999999 554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.69  E-value=2.9e-15  Score=125.05  Aligned_cols=176  Identities=14%  Similarity=0.067  Sum_probs=130.7

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----hhchhcccCcHHHHHHHHHHHHHHHHHHHH
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHC----LYDIKRRENDKEASEKYILQGIEYAKKAME  107 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~~~~~~~~~~~~~~~A~~~~~kal~  107 (259)
                      +..+..++  .. |++++|+..|+++++  |+++.+++.+|.+|..    .+++.              +|+.+++++++
T Consensus        10 ~~lg~~~~--~~-~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~--------------~A~~~~~~a~~   70 (273)
T 1ouv_A           10 VGLGAKSY--KE-KDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLK--------------KAASFYAKACD   70 (273)
T ss_dssp             HHHHHHHH--HT-TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHH--------------HHHHHHHHHHH
T ss_pred             HHHHHHHH--hC-CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHH--------------HHHHHHHHHHH
Confidence            34455555  45 888888888888887  7788888888888887    66654              88888888887


Q ss_pred             hCCCChHHHHHHHHHHHH----hhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHH----hhccc----h
Q psy9159         108 LAPNNSNTQKWYGICVGA----NGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYE----ISKLS----F  175 (259)
Q Consensus       108 ~~P~~~~~~~~la~~~~~----~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~----~~~~~----~  175 (259)
                      ++  ++.++..+|.++..    .+++.          ++...++++++++  ++.+++.+|.++..    .++.+    +
T Consensus        71 ~~--~~~a~~~lg~~~~~g~~~~~~~~----------~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~  136 (273)
T 1ouv_A           71 LN--YSNGCHLLGNLYYSGQGVSQNTN----------KALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEY  136 (273)
T ss_dssp             TT--CHHHHHHHHHHHHHTSSSCCCHH----------HHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CC--CHHHHHHHHHHHhCCCCcccCHH----------HHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHH
Confidence            75  77888888888776    66555          4567777777763  77788888887776    54432    2


Q ss_pred             HHHHHH-----------HHHh-cCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHH----hCCHHHHHHHHHHHh
Q psy9159         176 FERKIA-----------VLIV-SDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIE----AGEYAKAVQWLDKAK  239 (259)
Q Consensus       176 ~~~~~~-----------~~~~-~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~kal  239 (259)
                      +.+++.           ..+. +....+++++|+.+|+++++.++   +.++..+|.+|..    .+++++|+++|++++
T Consensus       137 ~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~  213 (273)
T 1ouv_A          137 FTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD---SPGCFNAGNMYHHGEGATKNFKEALARYSKAC  213 (273)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence            333221           1111 11125899999999999999854   6789999999999    999999999999999


Q ss_pred             cCCC
Q psy9159         240 AIPV  243 (259)
Q Consensus       240 ~l~p  243 (259)
                      +.+|
T Consensus       214 ~~~~  217 (273)
T 1ouv_A          214 ELEN  217 (273)
T ss_dssp             HTTC
T ss_pred             hCCC
Confidence            9875

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.69  E-value=6.2e-16  Score=126.19  Aligned_cols=162  Identities=15%  Similarity=0.113  Sum_probs=128.8

Q ss_pred             CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhhchhhHHHHHhcHH
Q psy9159          64 DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS---NTQKWYGICVGANGQFQSLKEKIKCGV  140 (259)
Q Consensus        64 ~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~---~~~~~la~~~~~~~~~~~~~~~~~~~~  140 (259)
                      ++++++.+|..+...|++.              +|+..++++++..|+++   .+++++|.++...|++.          
T Consensus         3 ~~~~~~~~a~~~~~~g~~~--------------~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~----------   58 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWR--------------QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLP----------   58 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHH----------
T ss_pred             CHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHH----------
Confidence            5788999999999999875              99999999999999875   68999999999999987          


Q ss_pred             HHHHHHHHHHccCCCChh---HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhH--
Q psy9159         141 VFRDQMNKAIQMAPKDFT---LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQ--  215 (259)
Q Consensus       141 ~a~~~~~kAl~l~P~~~~---~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~--  215 (259)
                      .|+..++++++++|+++.   +++.+|.+++..+.. .+.. ....-......|++++|+..|+++++..| +...++  
T Consensus        59 ~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~A~~~~~~~l~~~P-~~~~a~~a  135 (225)
T 2yhc_A           59 LAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS-ALQG-FFGVDRSDRDPQQARAAFSDFSKLVRGYP-NSQYTTDA  135 (225)
T ss_dssp             HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHTTCT-TCTTHHHH
T ss_pred             HHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh-hhhh-hhccchhhcCcHHHHHHHHHHHHHHHHCc-CChhHHHH
Confidence            567899999999999986   799999998775421 0000 00000000124789999999999999999 555443  


Q ss_pred             ---------------HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         216 ---------------LLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       216 ---------------~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                                     +.+|.+|...|++++|+..|+++++..|+++.....+
T Consensus       136 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  187 (225)
T 2yhc_A          136 TKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDAL  187 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHH
Confidence                           6789999999999999999999999999987554443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.69  E-value=6.3e-16  Score=132.52  Aligned_cols=160  Identities=7%  Similarity=-0.026  Sum_probs=125.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhh--chhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLY--DIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGIC  122 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g--~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~  122 (259)
                      +..++|+..+.+++..+|++..+|+..+.++..+|  .+              ++++..+.++|.++|++..+|.+.+.+
T Consensus        47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~--------------~eeL~~~~~~L~~nPk~y~aW~~R~~i  112 (306)
T 3dra_A           47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNL--------------YDELDWCEEIALDNEKNYQIWNYRQLI  112 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCH--------------HHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccH--------------HHHHHHHHHHHHHCcccHHHHHHHHHH
Confidence            45579999999999999999999999999999988  54              499999999999999999999999999


Q ss_pred             H----HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHH--HH
Q psy9159         123 V----GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAE--DA  196 (259)
Q Consensus       123 ~----~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--eA  196 (259)
                      +    ...+..       ......+..++++++++|.|..+|+.+|.+...+                    |+++  ++
T Consensus       113 L~~~~~~l~~~-------~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l--------------------~~~~~~~E  165 (306)
T 3dra_A          113 IGQIMELNNND-------FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTF--------------------DLHNDAKE  165 (306)
T ss_dssp             HHHHHHHTTTC-------CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCTTCHHH
T ss_pred             HHHHHHhcccc-------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------------------cccChHHH
Confidence            9    444110       1112567889999999999999999999887665                    4444  66


Q ss_pred             HHHHHHHHhhCCCCcHHhHHHHHHHHHHhCC------HHHHHHHHHHHhcCCCCCc
Q psy9159         197 IANCLKAEELAPAPWKENQLLIAKCYIEAGE------YAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       197 i~~~~kAi~l~P~~~~~~~~~la~~~~~~g~------~~eA~~~~~kal~l~p~~~  246 (259)
                      +++++++++.+| .+..+|.+++.++..+|+      ++++++++++++.++|.|.
T Consensus       166 L~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~  220 (306)
T 3dra_A          166 LSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNP  220 (306)
T ss_dssp             HHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCc
Confidence            777777777777 556667777776666665      6677777777777666654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.68  E-value=5.3e-16  Score=113.65  Aligned_cols=125  Identities=17%  Similarity=0.147  Sum_probs=114.0

Q ss_pred             hcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhc
Q psy9159          59 NKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKC  138 (259)
Q Consensus        59 ~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~  138 (259)
                      +.+|.++.+++.+|.++...|++.              +|+..++++++.+|+++.++..+|.++...|++.        
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------   63 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFE--------------AAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYA--------   63 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--------
T ss_pred             hcchhhhHHHHHHHHHHHHccCHH--------------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchH--------
Confidence            456778899999999999999875              9999999999999999999999999999998887        


Q ss_pred             HHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHH
Q psy9159         139 GVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI  218 (259)
Q Consensus       139 ~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~l  218 (259)
                        .+...++++++++|+++.+++.+|.++...                    |++++|+.+|+++++++| ++..++..+
T Consensus        64 --~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~A~~~~~~~~~~~p-~~~~~~~~l  120 (131)
T 2vyi_A           64 --GAVQDCERAICIDPAYSKAYGRMGLALSSL--------------------NKHVEAVAYYKKALELDP-DNETYKSNL  120 (131)
T ss_dssp             --HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred             --HHHHHHHHHHhcCccCHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHhcCc-cchHHHHHH
Confidence              567899999999999999999999998875                    889999999999999999 778999999


Q ss_pred             HHHHHHhCCH
Q psy9159         219 AKCYIEAGEY  228 (259)
Q Consensus       219 a~~~~~~g~~  228 (259)
                      |.++..+|++
T Consensus       121 ~~~~~~~~~~  130 (131)
T 2vyi_A          121 KIAELKLREA  130 (131)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHhcC
Confidence            9999999875

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.68  E-value=1.8e-16  Score=133.45  Aligned_cols=164  Identities=13%  Similarity=0.066  Sum_probs=136.9

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHH
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNK--------QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKK  104 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~k  104 (259)
                      ..+..+.  .. |++++|+..+++++..        .|..+.++..+|.+|...|++.              +|+.++++
T Consensus        74 ~la~~~~--~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------------~A~~~~~~  136 (311)
T 3nf1_A           74 ILALVYR--DQ-NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK--------------EAEPLCKR  136 (311)
T ss_dssp             HHHHHHH--HT-TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH--------------HHHHHHHH
T ss_pred             HHHHHHH--HC-CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHH--------------HHHHHHHH
Confidence            3344444  45 9999999999999986        4777889999999999999875              88999999


Q ss_pred             HHHhC--------CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHcc--------CCCChhHHHHHHHHHH
Q psy9159         105 AMELA--------PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM--------APKDFTLYSLKGRYQY  168 (259)
Q Consensus       105 al~~~--------P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l--------~P~~~~~~~~lG~~~~  168 (259)
                      ++++.        |....++..+|.++...|++.          .+...+++++++        +|....++..+|.++.
T Consensus       137 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  206 (311)
T 3nf1_A          137 ALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYE----------EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL  206 (311)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH----------HHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            98874        667778888999999888887          466788888887        7778889999999998


Q ss_pred             HhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh------------------------------------------
Q psy9159         169 EISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL------------------------------------------  206 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l------------------------------------------  206 (259)
                      ..                    |++++|+.+|++++++                                          
T Consensus       207 ~~--------------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  266 (311)
T 3nf1_A          207 KQ--------------------GKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW  266 (311)
T ss_dssp             HH--------------------TCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred             Hc--------------------CCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence            86                    6788888888888874                                          


Q ss_pred             -------CCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         207 -------APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       207 -------~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                             +| ....++..+|.+|..+|++++|+++|++++++.|.
T Consensus       267 ~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          267 YKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             -------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence                   45 55678999999999999999999999999998765

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.68  E-value=1.1e-15  Score=112.65  Aligned_cols=123  Identities=17%  Similarity=0.180  Sum_probs=112.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcH
Q psy9159          60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCG  139 (259)
Q Consensus        60 ~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~  139 (259)
                      ..|.++..++.+|.++...|++.              +|+..++++++.+|+++.++..+|.++...+++.         
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~--------------~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~---------   67 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYP--------------QAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQ---------   67 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSH--------------HHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHH---------
T ss_pred             cCcccHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHH---------
Confidence            46888999999999999999876              9999999999999999999999999999888887         


Q ss_pred             HHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHH
Q psy9159         140 VVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIA  219 (259)
Q Consensus       140 ~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la  219 (259)
                       ++...++++++++|+++.+++.+|.++...                    |++++|+.+|+++++++| .+..++..++
T Consensus        68 -~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--------------------~~~~~A~~~~~~~~~~~p-~~~~~~~~l~  125 (133)
T 2lni_A           68 -LALKDCEECIQLEPTFIKGYTRKAAALEAM--------------------KDYTKAMDVYQKALDLDS-SCKEAADGYQ  125 (133)
T ss_dssp             -HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCG-GGTHHHHHHH
T ss_pred             -HHHHHHHHHHHhCCCchHHHHHHHHHHHHH--------------------hhHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence             567899999999999999999999998875                    889999999999999999 7788999999


Q ss_pred             HHHHHhCC
Q psy9159         220 KCYIEAGE  227 (259)
Q Consensus       220 ~~~~~~g~  227 (259)
                      .++..+|+
T Consensus       126 ~~~~~~~~  133 (133)
T 2lni_A          126 RCMMAQYN  133 (133)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHhcC
Confidence            99998875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.68  E-value=1.3e-16  Score=132.10  Aligned_cols=154  Identities=16%  Similarity=0.198  Sum_probs=130.5

Q ss_pred             CCHHHHHHHHHHHhh--------cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh--------
Q psy9159          45 DDKAKAYNLTMELNN--------KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL--------  108 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~--------~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~--------  108 (259)
                      |++++|+..++++++        .+|..+.++..+|.+|...|++.              +|+..+++++++        
T Consensus        15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------------~A~~~~~~al~~~~~~~~~~   80 (283)
T 3edt_B           15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK--------------EAAHLLNDALAIREKTLGKD   80 (283)
T ss_dssp             SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHHTCTT
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHH--------------HHHHHHHHHHHHHHHHcCCc
Confidence            666666666666665        34778999999999999999875              899999999988        


Q ss_pred             CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHcc--------CCCChhHHHHHHHHHHHhhccchHHHHH
Q psy9159         109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM--------APKDFTLYSLKGRYQYEISKLSFFERKI  180 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l--------~P~~~~~~~~lG~~~~~~~~~~~~~~~~  180 (259)
                      .|..+.++..+|.++...|++.          .+...+++++++        +|....++..+|.++...          
T Consensus        81 ~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------  140 (283)
T 3edt_B           81 HPAVAATLNNLAVLYGKRGKYK----------EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ----------  140 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHH----------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT----------
T ss_pred             chHHHHHHHHHHHHHHHhccHH----------HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc----------
Confidence            4777888999999999999887          456777888777        577788999999988774          


Q ss_pred             HHHHhcCCCCCcHHHHHHHHHHHHhh--------CCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159         181 AVLIVSDLDEPTAEDAIANCLKAEEL--------APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV  243 (259)
Q Consensus       181 ~~~~~~~~~~g~~~eAi~~~~kAi~l--------~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p  243 (259)
                                |++++|+.+|++++++        +| ....++..+|.++..+|++++|++.+++++++.|
T Consensus       141 ----------g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          141 ----------GKAEEVEYYYRRALEIYATRLGPDDP-NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH  200 (283)
T ss_dssp             ----------TCHHHHHHHHHHHHHHHHHHSCTTCH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             ----------CCHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                      8899999999999999        67 5678899999999999999999999999998743

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.68  E-value=8.3e-17  Score=128.56  Aligned_cols=153  Identities=12%  Similarity=0.044  Sum_probs=125.3

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh-----------
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-----------  113 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~-----------  113 (259)
                      |.++++.+.+.......+..+..+..+|.++...|++.              +|+..+++++++.|+++           
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------------~A~~~~~~al~~~~~~~~~~~~~~~~~~   83 (198)
T 2fbn_A           18 YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEIN--------------EAIVKYKEALDFFIHTEEWDDQILLDKK   83 (198)
T ss_dssp             ----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHTTTTCTTCCCHHHHHHH
T ss_pred             hhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHHhcccccchhhHHHHH
Confidence            77777777777777777778889999999999999875              99999999999999998           


Q ss_pred             -----HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC
Q psy9159         114 -----NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL  188 (259)
Q Consensus       114 -----~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~  188 (259)
                           .++.++|.++...|++.          .+...++++++++|+++.+++.+|.++...                  
T Consensus        84 ~~~~~~~~~~la~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------------------  135 (198)
T 2fbn_A           84 KNIEISCNLNLATCYNKNKDYP----------KAIDHASKVLKIDKNNVKALYKLGVANMYF------------------  135 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHH------------------
T ss_pred             HHHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHc------------------
Confidence                 89999999999999887          567899999999999999999999999886                  


Q ss_pred             CCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHH-HHHHHHhcCC
Q psy9159         189 DEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAV-QWLDKAKAIP  242 (259)
Q Consensus       189 ~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~-~~~~kal~l~  242 (259)
                        |++++|+.+|+++++++| ++..++..++.++..+++..++. ..+.+.+...
T Consensus       136 --~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          136 --GFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             --TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             --ccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence              889999999999999999 78999999999999999999887 5566655543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.68  E-value=3.8e-15  Score=136.36  Aligned_cols=161  Identities=10%  Similarity=-0.032  Sum_probs=136.6

Q ss_pred             CCHH-------HHHHHHHHHhh-cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh-HH
Q psy9159          45 DDKA-------KAYNLTMELNN-KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-NT  115 (259)
Q Consensus        45 ~~~~-------~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~-~~  115 (259)
                      |+++       +|+..++++++ ..|+++.+|..+|.++...|++.              +|+..|+++++++|+++ .+
T Consensus       293 g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~--------------~A~~~~~~al~~~p~~~~~~  358 (530)
T 2ooe_A          293 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE--------------KVHSIYNRLLAIEDIDPTLV  358 (530)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHSSSSCHHHH
T ss_pred             cchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH--------------HHHHHHHHHhCccccCchHH
Confidence            7776       89999999997 79999999999999999888865              99999999999999986 58


Q ss_pred             HHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHH
Q psy9159         116 QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAED  195 (259)
Q Consensus       116 ~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e  195 (259)
                      |..++.++.+.|+..          .+...+++|++..|.+...+...+.+.+..                   .|++++
T Consensus       359 ~~~~~~~~~~~~~~~----------~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~-------------------~~~~~~  409 (530)
T 2ooe_A          359 YIQYMKFARRAEGIK----------SGRMIFKKAREDARTRHHVYVTAALMEYYC-------------------SKDKSV  409 (530)
T ss_dssp             HHHHHHHHHHHHHHH----------HHHHHHHHHHTCTTCCTHHHHHHHHHHHHH-------------------TCCHHH
T ss_pred             HHHHHHHHHHhcCHH----------HHHHHHHHHHhccCCchHHHHHHHHHHHHH-------------------cCChhH
Confidence            888888877776655          567889999999998877777666553321                   388999


Q ss_pred             HHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159         196 AIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       196 Ai~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~  249 (259)
                      |+..|+++++..| +++.+|..++.++..+|+.++|...|++++...|.+++..
T Consensus       410 A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~  462 (530)
T 2ooe_A          410 AFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS  462 (530)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred             HHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence            9999999999999 7789999999999999999999999999999988877533

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.68  E-value=2.7e-16  Score=137.82  Aligned_cols=163  Identities=16%  Similarity=0.167  Sum_probs=137.4

Q ss_pred             HHHHHhhcCCcCCHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH
Q psy9159          34 EIDRLLYYGKKDDKAKAYNLTMELNNK------QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME  107 (259)
Q Consensus        34 ~~~~l~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~  107 (259)
                      .+..++  .. |++++|+..++++++.      .+..+.+++.+|.+|..+|++.              +|+.++++|++
T Consensus       109 ~g~~~~--~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~--------------~A~~~~~~al~  171 (383)
T 3ulq_A          109 RGMYEL--DQ-REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTY--------------FSMDYARQAYE  171 (383)
T ss_dssp             HHHHHH--HT-TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHH
T ss_pred             HHHHHH--Hh-cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHH
Confidence            555555  56 9999999999999886      2335689999999999999875              99999999999


Q ss_pred             hCCCC-------hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh------hHHHHHHHHHHHhhccc
Q psy9159         108 LAPNN-------SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF------TLYSLKGRYQYEISKLS  174 (259)
Q Consensus       108 ~~P~~-------~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~------~~~~~lG~~~~~~~~~~  174 (259)
                      +.+..       +.++..+|.++...|++.          .|...+++|+++.|...      .+++.+|.+|...    
T Consensus       172 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~----  237 (383)
T 3ulq_A          172 IYKEHEAYNIRLLQCHSLFATNFLDLKQYE----------DAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ----  237 (383)
T ss_dssp             HHHTCSTTHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHhCccchHHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC----
Confidence            85554       347888899999888887          56788899998866554      4889999998875    


Q ss_pred             hHHHHHHHHHhcCCCCCcHHHHHHHHHHHHh-----hC-CCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         175 FFERKIAVLIVSDLDEPTAEDAIANCLKAEE-----LA-PAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~-----l~-P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                                      |++++|+.+|++|++     .+ | ....++.++|.++..+|++++|++++++++++.+.
T Consensus       238 ----------------g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  296 (383)
T 3ulq_A          238 ----------------SQYEDAIPYFKRAIAVFEESNILP-SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK  296 (383)
T ss_dssp             ----------------TCHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ----------------CCHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence                            889999999999999     46 6 66788999999999999999999999999998654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.67  E-value=2.6e-15  Score=120.38  Aligned_cols=150  Identities=10%  Similarity=0.033  Sum_probs=128.0

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      +..+..++  .. |++++|+..+++++  +| ++.+++.+|.+|...|++.              +|+..++++++++|+
T Consensus        10 ~~~g~~~~--~~-~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~--------------~A~~~~~~al~~~~~   69 (213)
T 1hh8_A           10 WNEGVLAA--DK-KDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMT--------------EAEKAFTRSINRDKH   69 (213)
T ss_dssp             HHHHHHHH--HT-TCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHH--Hh-CCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCcc
Confidence            45566666  56 99999999999996  34 7899999999999999875              999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh----------------hHHHHHHHHHHHhhccch
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF----------------TLYSLKGRYQYEISKLSF  175 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~----------------~~~~~lG~~~~~~~~~~~  175 (259)
                      ++.++..+|.++...|++.          .|...+++++++.|++.                .+++.+|.++...     
T Consensus        70 ~~~~~~~lg~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----  134 (213)
T 1hh8_A           70 LAVAYFQRGMLYYQTEKYD----------LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK-----  134 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT-----
T ss_pred             chHHHHHHHHHHHHcccHH----------HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc-----
Confidence            9999999999999999887          56789999999999887                9999999999875     


Q ss_pred             HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         176 FERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                                     |++++|+.+|+++++++| ...            .++.++|+..+.+.....|.
T Consensus       135 ---------------g~~~~A~~~~~~al~~~p-~~~------------~~~~~~a~~~~~~~~~~~~~  175 (213)
T 1hh8_A          135 ---------------EEWKKAEEQLALATSMKS-EPR------------HSKIDKAMECVWKQKLYEPV  175 (213)
T ss_dssp             ---------------TCHHHHHHHHHHHHTTCC-SGG------------GGHHHHHHHHHHTTCCCCCC
T ss_pred             ---------------cCHHHHHHHHHHHHHcCc-ccc------------cchHHHHHHHHHhccccccc
Confidence                           889999999999999999 542            24556677777666555444

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.67  E-value=8.3e-16  Score=119.03  Aligned_cols=119  Identities=16%  Similarity=0.118  Sum_probs=106.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcH
Q psy9159          60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCG  139 (259)
Q Consensus        60 ~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~  139 (259)
                      .++.++++++.+|.++...|++.              +|+..++++++++|+++.++..+|.++...|++.         
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~--------------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~---------   62 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYS--------------KAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE---------   62 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH---------
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHH---------
Confidence            46778899999999999999875              9999999999999999999999999999999887         


Q ss_pred             HHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHH
Q psy9159         140 VVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIA  219 (259)
Q Consensus       140 ~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la  219 (259)
                       .++..++++++++|+++.+|+.+|.++...                    |++++|+.+|+++++++| ++..++..++
T Consensus        63 -~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------------g~~~~A~~~~~~al~~~p-~~~~~~~~~~  120 (164)
T 3sz7_A           63 -KAAEDAELATVVDPKYSKAWSRLGLARFDM--------------------ADYKGAKEAYEKGIEAEG-NGGSDAMKRG  120 (164)
T ss_dssp             -HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHS-SSCCHHHHHH
T ss_pred             -HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------------cCHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence             567899999999999999999999999875                    889999999999999999 6777666666


Q ss_pred             HHHH
Q psy9159         220 KCYI  223 (259)
Q Consensus       220 ~~~~  223 (259)
                      .+..
T Consensus       121 l~~~  124 (164)
T 3sz7_A          121 LETT  124 (164)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.67  E-value=3.5e-16  Score=115.65  Aligned_cols=102  Identities=24%  Similarity=0.251  Sum_probs=95.1

Q ss_pred             CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159         110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD  189 (259)
Q Consensus       110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~  189 (259)
                      |..+..+...|..+...|++.          .|...++++++++|+++.+|+.+|.++...                   
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-------------------   51 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWP----------NAVKAYTEMIKRAPEDARGYSNRAAALAKL-------------------   51 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-------------------
T ss_pred             CchHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHh-------------------
Confidence            456778889999999999887          567899999999999999999999999885                   


Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                       |++++|+.+|+++++++| ++..+++.+|.++..+|++++|++.|+++++++
T Consensus        52 -~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           52 -MSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             -TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -cCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence             889999999999999999 789999999999999999999999999999999

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.66  E-value=7e-16  Score=131.88  Aligned_cols=170  Identities=11%  Similarity=0.061  Sum_probs=136.0

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHH
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND------PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKA  105 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~ka  105 (259)
                      +.++..+++ .. |++++|+..+.+++...+..      ..++..+|.+|..+|++.              +|+.+++++
T Consensus        39 ~~~a~~~~~-~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~--------------~A~~~~~~A  102 (307)
T 2ifu_A           39 YAKAAVAFK-NA-KQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP--------------EAVQYIEKA  102 (307)
T ss_dssp             HHHHHHHHH-HT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG--------------GGHHHHHHH
T ss_pred             HHHHHHHHH-Hc-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH--------------HHHHHHHHH
Confidence            444444442 45 99999999999999876533      568888999999988876              899999999


Q ss_pred             HHhCCCC------hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC------hhHHHHHHHHHHHhhcc
Q psy9159         106 MELAPNN------SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD------FTLYSLKGRYQYEISKL  173 (259)
Q Consensus       106 l~~~P~~------~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~------~~~~~~lG~~~~~~~~~  173 (259)
                      +++.+..      ..++..+|.++.. |++.          .|+.+|++|+++.|..      ..++..+|.++...   
T Consensus       103 l~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~----------~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~---  168 (307)
T 2ifu_A          103 SVMYVENGTPDTAAMALDRAGKLMEP-LDLS----------KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ---  168 (307)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTT-TCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHc-CCHH----------HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHc---
Confidence            9885432      3566778888876 7766          5778999999998865      56788899988774   


Q ss_pred             chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc-----HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW-----KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                                       |++++|+.+|++++++.|+..     ...++.+|.++..+|++++|++.|++++ ++|.....
T Consensus       169 -----------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~  230 (307)
T 2ifu_A          169 -----------------QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS  230 (307)
T ss_dssp             -----------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred             -----------------CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence                             889999999999999876221     2468889999999999999999999999 99987654


Q ss_pred             h
Q psy9159         249 H  249 (259)
Q Consensus       249 ~  249 (259)
                      .
T Consensus       231 ~  231 (307)
T 2ifu_A          231 E  231 (307)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.66  E-value=5.9e-17  Score=146.42  Aligned_cols=149  Identities=13%  Similarity=0.035  Sum_probs=131.6

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC------------
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN------------  112 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~------------  112 (259)
                      +++++|++.++.++...|+.+.++..+|.+++..|++.              +|+..|++|++++|++            
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~--------------~A~~~y~~Al~~~p~~~~~~~~~~~~~~  313 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYM--------------QAVIQYGKIVSWLEMEYGLSEKESKASE  313 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHTTCCSCCHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHH--------------HHHHHHHHHHHHhcccccCChHHHHHHH
Confidence            56678888888888889999999999999999999875              9999999999999999            


Q ss_pred             ---hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159         113 ---SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD  189 (259)
Q Consensus       113 ---~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~  189 (259)
                         ..++.++|.++..++++.          .|+..++++|+++|+++.+|+.+|.++..+                   
T Consensus       314 ~~~~~~~~nla~~~~~~g~~~----------~A~~~~~~al~~~p~~~~a~~~~g~a~~~~-------------------  364 (457)
T 1kt0_A          314 SFLLAAFLNLAMCYLKLREYT----------KAVECCDKALGLDSANEKGLYRRGEAQLLM-------------------  364 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHhcCCccHHHHHHHHHHHHHc-------------------
Confidence               689999999999999987          577999999999999999999999999885                   


Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHH-HHHHH
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQ-WLDKA  238 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~-~~~ka  238 (259)
                       |++++|+.+|++|++++| ++..++..++.++..+|++++|.+ .+++.
T Consensus       365 -g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          365 -NEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             -TCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -cCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             889999999999999999 788999999999999999998864 34433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.66  E-value=1.9e-15  Score=126.58  Aligned_cols=182  Identities=14%  Similarity=0.089  Sum_probs=143.0

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-hhccc-------------CcHHHHHHHHHHHHHHHHHHHHhC-----
Q psy9159          49 KAYNLTMELNNKQPNDPDVLYRLAKACHCLYD-IKRRE-------------NDKEASEKYILQGIEYAKKAMELA-----  109 (259)
Q Consensus        49 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-~~~~~-------------~~~~~~~~~~~~A~~~~~kal~~~-----  109 (259)
                      -.+.+++-.+..+|++...+...|..|...++ +.+.+             .+..+....+.+|.++..++|+..     
T Consensus        50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~~  129 (301)
T 3u64_A           50 LVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGFT  129 (301)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence            34567888899999999999999999987765 33210             112355677888888888888653     


Q ss_pred             -------------------CCChHHHHHHHHHHHHhhch-hhHHHHHhcHHHHHHHHHHHHccCCC--ChhHHHHHHHHH
Q psy9159         110 -------------------PNNSNTQKWYGICVGANGQF-QSLKEKIKCGVVFRDQMNKAIQMAPK--DFTLYSLKGRYQ  167 (259)
Q Consensus       110 -------------------P~~~~~~~~la~~~~~~~~~-~~~~~~~~~~~~a~~~~~kAl~l~P~--~~~~~~~lG~~~  167 (259)
                                         |+++++++|.|.+.+..... .+....+.....++..+++|+++||+  +..+|..+|.+|
T Consensus       130 ~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY  209 (301)
T 3u64_A          130 REVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFY  209 (301)
T ss_dssp             HHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence                               45689999999988763222 12222344555788999999999999  788999999999


Q ss_pred             HHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHh-CCHHHHHHHHHHHhcCCCCC
Q psy9159         168 YEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEA-GEYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~-g~~~eA~~~~~kal~l~p~~  245 (259)
                      .....+               .-|+.++|..+|++|++++|+.++.+++..|..++.. |++++|.+.+++|++.+|..
T Consensus       210 ~~vPp~---------------~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          210 AAAPES---------------FGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHSCTT---------------TTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HhCCCc---------------cCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            876321               1389999999999999999954589999999999885 99999999999999999986

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.66  E-value=3e-15  Score=130.02  Aligned_cols=167  Identities=8%  Similarity=-0.020  Sum_probs=143.3

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      +..++|++.+.+++..+|++..+|...+.++..+|..             +++++..+.+++.++|++..+|.+.+.++.
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~-------------l~eEL~~~~~~L~~nPKny~aW~hR~wlL~  134 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKS-------------LEDELRLMNEFAVQNLKSYQVWHHRLLLLD  134 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC-------------HHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhh-------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            6678999999999999999999999999999998842             249999999999999999999999999998


Q ss_pred             Hh-h-chhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q psy9159         125 AN-G-QFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLK  202 (259)
Q Consensus       125 ~~-~-~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~k  202 (259)
                      .+ + ++.          ..++.++++|+++|.|..+|+.++.+....+.....            .....+++++++++
T Consensus       135 ~l~~~~~~----------~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~------------~~~~~~eELe~~~k  192 (349)
T 3q7a_A          135 RISPQDPV----------SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI------------SEAQWGSELDWCNE  192 (349)
T ss_dssp             HHCCSCCH----------HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCC------------CHHHHHHHHHHHHH
T ss_pred             HhcCCChH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccc------------chhhHHHHHHHHHH
Confidence            87 5 443          456889999999999999999999887665332100            00123599999999


Q ss_pred             HHhhCCCCcHHhHHHHHHHHHHhCC-------HHHHHHHHHHHhcCCCCCcc
Q psy9159         203 AEELAPAPWKENQLLIAKCYIEAGE-------YAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       203 Ai~l~P~~~~~~~~~la~~~~~~g~-------~~eA~~~~~kal~l~p~~~~  247 (259)
                      +++.+| .+..+|.+++.++..+++       ++++++++++++.++|.|..
T Consensus       193 ~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S  243 (349)
T 3q7a_A          193 MLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS  243 (349)
T ss_dssp             HHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence            999999 789999999999999997       79999999999999998864

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.66  E-value=1.6e-14  Score=120.56  Aligned_cols=171  Identities=13%  Similarity=0.077  Sum_probs=136.9

Q ss_pred             CcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----hhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Q psy9159          43 KKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHC----LYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKW  118 (259)
Q Consensus        43 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~  118 (259)
                      . +++++|+..++++++.+  ++.+++.+|.+|..    .+++.              +|+.+++++++.+  ++.++..
T Consensus        55 ~-~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~--------------~A~~~~~~a~~~~--~~~a~~~  115 (273)
T 1ouv_A           55 E-KNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTN--------------KALQYYSKACDLK--YAEGCAS  115 (273)
T ss_dssp             C-CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH--------------HHHHHHHHHHHTT--CHHHHHH
T ss_pred             C-CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHH--------------HHHHHHHHHHHcC--CccHHHH
Confidence            5 99999999999999875  89999999999998    77654              8999999998874  8899999


Q ss_pred             HHHHHHH----hhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHH----hhccc----hHHHHHH-----
Q psy9159         119 YGICVGA----NGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYE----ISKLS----FFERKIA-----  181 (259)
Q Consensus       119 la~~~~~----~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~----~~~~~----~~~~~~~-----  181 (259)
                      +|.++..    .+++.          ++...++++++++  ++.+++.+|.++..    .++.+    ++.+++.     
T Consensus       116 lg~~~~~~~~~~~~~~----------~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  183 (273)
T 1ouv_A          116 LGGIYHDGKVVTRDFK----------KAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSP  183 (273)
T ss_dssp             HHHHHHHCSSSCCCHH----------HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCCcccCHH----------HHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence            9999887    66665          5678888888876  67788888888876    44432    3333321     


Q ss_pred             ------HHHh-cCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         182 ------VLIV-SDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIE----AGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       182 ------~~~~-~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                            ..+. +....+++++|+.+|+++++.+|   ..++..+|.+|..    .+++++|+++|+++++++|.++.
T Consensus       184 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~  257 (273)
T 1ouv_A          184 GCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC  257 (273)
T ss_dssp             HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence                  1111 12226899999999999999977   6789999999999    99999999999999999976553

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.66  E-value=8.7e-16  Score=118.92  Aligned_cols=108  Identities=15%  Similarity=0.099  Sum_probs=100.7

Q ss_pred             CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC
Q psy9159         109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL  188 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~  188 (259)
                      +|.++.++..+|.++...|++.          .++..|+++++++|+++.+|+.+|.++...                  
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~------------------   58 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYS----------KAIDLYTQALSIAPANPIYLSNRAAAYSAS------------------   58 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHT------------------
T ss_pred             hhhhHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCcCHHHHHHHHHHHHHc------------------
Confidence            4667888999999999999887          577899999999999999999999999885                  


Q ss_pred             CCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         189 DEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       189 ~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                        |++++|+.+|+++++++| ++..+++.+|.+|..+|++++|+++|+++++++|++++
T Consensus        59 --g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           59 --GQHEKAAEDAELATVVDP-KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             --TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             --cCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence              889999999999999999 78999999999999999999999999999999999876

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.65  E-value=7.3e-16  Score=129.63  Aligned_cols=164  Identities=14%  Similarity=0.157  Sum_probs=138.6

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhh--------cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHH
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNN--------KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAK  103 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~--------~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~  103 (259)
                      ...+..++  .. |++++|+..++++++        ..|..+.++..+|.+|...|++.              +|+.+++
T Consensus        31 ~~l~~~~~--~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------------~A~~~~~   93 (311)
T 3nf1_A           31 HNLVIQYA--SQ-GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK--------------DAANLLN   93 (311)
T ss_dssp             HHHHHHHH--HT-TCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHH
T ss_pred             HHHHHHHH--Hc-CCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHH--------------HHHHHHH
Confidence            34455555  56 999999999999999        47888999999999999999875              8888888


Q ss_pred             HHHHh--------CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccC--------CCChhHHHHHHHHH
Q psy9159         104 KAMEL--------APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMA--------PKDFTLYSLKGRYQ  167 (259)
Q Consensus       104 kal~~--------~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~--------P~~~~~~~~lG~~~  167 (259)
                      +++++        .|....++..+|.++...|++.          .+...+++++++.        |....++..+|.++
T Consensus        94 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  163 (311)
T 3nf1_A           94 DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK----------EAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC  163 (311)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH----------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHH----------HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            88887        4667788899999999998887          4567777777763        66678899999988


Q ss_pred             HHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh--------CCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159         168 YEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL--------APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK  239 (259)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l--------~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal  239 (259)
                      ...                    |++++|+.+|++++++        +| ....++..+|.+|..+|++++|++++++++
T Consensus       164 ~~~--------------------~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          164 QNQ--------------------GKYEEVEYYYQRALEIYQTKLGPDDP-NVAKTKNNLASCYLKQGKFKQAETLYKEIL  222 (311)
T ss_dssp             HTT--------------------TCHHHHHHHHHHHHHHHHHTSCTTCH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHc--------------------CCHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            764                    8899999999999998        66 567789999999999999999999999999


Q ss_pred             cCCC
Q psy9159         240 AIPV  243 (259)
Q Consensus       240 ~l~p  243 (259)
                      ++.|
T Consensus       223 ~~~~  226 (311)
T 3nf1_A          223 TRAH  226 (311)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.65  E-value=9.7e-18  Score=145.64  Aligned_cols=168  Identities=14%  Similarity=0.021  Sum_probs=135.0

Q ss_pred             CCHHHHHHHHHH----HhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy9159          45 DDKAKAYNLTME----LNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYG  120 (259)
Q Consensus        45 ~~~~~A~~~~~~----~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la  120 (259)
                      +.+++|+..+..    ++...|+.  ++..+|..........  ...-...+..+++|++.++++++.+|+++.++..+|
T Consensus        79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~--~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g  154 (336)
T 1p5q_A           79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNA--ELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG  154 (336)
T ss_dssp             HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSC--CEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCC--eEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence            578999999999    88899986  3333333321000000  000000111234788889999999999999999999


Q ss_pred             HHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC---------------hhHHHHHHHHHHHhhccchHHHHHHHHHh
Q psy9159         121 ICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD---------------FTLYSLKGRYQYEISKLSFFERKIAVLIV  185 (259)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~---------------~~~~~~lG~~~~~~~~~~~~~~~~~~~~~  185 (259)
                      .++...|++.          .|...|++|++++|++               ..+|+.+|.++...               
T Consensus       155 ~~~~~~g~~~----------~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~---------------  209 (336)
T 1p5q_A          155 TVYFKEGKYK----------QALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL---------------  209 (336)
T ss_dssp             HHHHHHTCHH----------HHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred             HHHHHCCCHH----------HHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc---------------
Confidence            9999999887          5779999999999999               59999999999885               


Q ss_pred             cCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         186 SDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       186 ~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                           |++++|+.+|++|++++| ++..+++.+|.+|..+|++++|+..|+++++++|.+.+
T Consensus       210 -----g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~  265 (336)
T 1p5q_A          210 -----QAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA  265 (336)
T ss_dssp             -----TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred             -----CCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence                 889999999999999999 78999999999999999999999999999999998865

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.65  E-value=4.3e-15  Score=125.90  Aligned_cols=167  Identities=13%  Similarity=0.016  Sum_probs=134.6

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHH------HHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHH
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDV------LYRLAKACHCLYDIKRRENDKEASEKYILQGIEYA  102 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~------~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~  102 (259)
                      ......+..++  .. |++++|++.+.++++..|..+..      ++.+|.++...|++              ++|+..+
T Consensus        76 ~~l~~~~~~~~--~~-~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~A~~~~  138 (293)
T 2qfc_A           76 KQFKDQVIMLC--KQ-KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDY--------------EYCILEL  138 (293)
T ss_dssp             HHHHHHHHHHH--HT-TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCH--------------HHHHHHH
T ss_pred             HHHHHHHHHHH--Hh-hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCH--------------HHHHHHH
Confidence            34456777777  67 99999999999999988876643      45566666666665              4999999


Q ss_pred             HHHHHhCCCC------hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHH---ccCCCCh----hHHHHHHHHHHH
Q psy9159         103 KKAMELAPNN------SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAI---QMAPKDF----TLYSLKGRYQYE  169 (259)
Q Consensus       103 ~kal~~~P~~------~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl---~l~P~~~----~~~~~lG~~~~~  169 (259)
                      ++++++.+..      ..++..+|.++...|++.          .|...+++|+   +..|++.    .+++.+|.+|..
T Consensus       139 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~----------~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~  208 (293)
T 2qfc_A          139 KKLLNQQLTGIDVYQNLYIENAIANIYAENGYLK----------KGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL  208 (293)
T ss_dssp             HHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence            9999887655      567888999999999887          5678888888   5566644    688999999987


Q ss_pred             hhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC-----CcHHhHHHHHHHHHHhCCHHHH-HHHHHHHhcCC
Q psy9159         170 ISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA-----PWKENQLLIAKCYIEAGEYAKA-VQWLDKAKAIP  242 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~-----~~~~~~~~la~~~~~~g~~~eA-~~~~~kal~l~  242 (259)
                      .                    |++++|+.+|++|+++.++     ....++.++|.+|..+|++++| ..++++|+.+.
T Consensus       209 ~--------------------~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          209 D--------------------SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             T--------------------TCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             H--------------------hhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            5                    8899999999999998641     0257799999999999999999 88899998764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.65  E-value=3.7e-16  Score=132.20  Aligned_cols=181  Identities=13%  Similarity=0.050  Sum_probs=141.8

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP  110 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P  110 (259)
                      ....+..++  .. |++++|+..|++++..+|+++.+++++|.+|..+|++.              +|+..++++++++|
T Consensus         7 ~~~~g~~~~--~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--------------~A~~~~~~al~~~p   69 (281)
T 2c2l_A            7 LKEQGNRLF--VG-RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE--------------QALADCRRALELDG   69 (281)
T ss_dssp             HHHHHHHHH--HT-TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHTTSCT
T ss_pred             HHHHHHHHH--Hc-CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHH--------------HHHHHHHHHHHhCC
Confidence            456677777  67 99999999999999999999999999999999999875              99999999999999


Q ss_pred             CChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhc-c-------------chH
Q psy9159         111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISK-L-------------SFF  176 (259)
Q Consensus       111 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~-~-------------~~~  176 (259)
                      +++.+++.+|.++...|++.          .|...++++++++|+++..+............ .             ..+
T Consensus        70 ~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  139 (281)
T 2c2l_A           70 QSVKAHFFLGQCQLEMESYD----------EAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESEL  139 (281)
T ss_dssp             TCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHH
T ss_pred             CCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            99999999999999999887          56789999999999875332222111111110 0             011


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHh-CCHHHHHHHHHHHhcCCCC
Q psy9159         177 ERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEA-GEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       177 ~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~-g~~~eA~~~~~kal~l~p~  244 (259)
                      ...++..+     .|++++|++.+++|++++| ++......++..+... +++++|.+.|+++.+..+.
T Consensus       140 ~~~l~~l~-----~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~  202 (281)
T 2c2l_A          140 HSYLTRLI-----AAERERELEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKK  202 (281)
T ss_dssp             HHHHHHHH-----HHHHHHHHTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSC
T ss_pred             HHHHHHHH-----HHHHHHHHHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence            11111111     3789999999999999999 6677777777777777 7799999999999875443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.65  E-value=7.2e-16  Score=130.87  Aligned_cols=158  Identities=11%  Similarity=0.063  Sum_probs=127.7

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHh-hchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC--
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPND------PDVLYRLAKACHCL-YDIKRRENDKEASEKYILQGIEYAKKAMELAPNN--  112 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~-g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~--  112 (259)
                      .. |++++|+..++++++..|..      +.++.++|.+|... |++.              +|+..+++|+++.|++  
T Consensus        89 ~~-g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~--------------~A~~~~~~Al~~~~~~~~  153 (292)
T 1qqe_A           89 SG-GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA--------------KAIDCYELAGEWYAQDQS  153 (292)
T ss_dssp             HT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------------HHHHHHHHHHHHHHHTTC
T ss_pred             HC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHH--------------HHHHHHHHHHHHHHhCCC
Confidence            45 99999999999999987754      56888999999985 8875              9999999999999875  


Q ss_pred             ----hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChh-------HHHHHHHHHHHhhccchHHHHHH
Q psy9159         113 ----SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT-------LYSLKGRYQYEISKLSFFERKIA  181 (259)
Q Consensus       113 ----~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~-------~~~~lG~~~~~~~~~~~~~~~~~  181 (259)
                          ..++..+|.++...|++.          .|...++++++++|++..       ++..+|.++...           
T Consensus       154 ~~~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-----------  212 (292)
T 1qqe_A          154 VALSNKCFIKCADLKALDGQYI----------EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA-----------  212 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHT-----------
T ss_pred             hHHHHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHc-----------
Confidence                567888999999999887          567899999999998765       578888888764           


Q ss_pred             HHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHh-----HHHHHHHHH--HhCCHHHHHHHHHHHhcCCCCC
Q psy9159         182 VLIVSDLDEPTAEDAIANCLKAEELAPAPWKEN-----QLLIAKCYI--EAGEYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       182 ~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~-----~~~la~~~~--~~g~~~eA~~~~~kal~l~p~~  245 (259)
                               |++++|+.+|+++++++| .+...     ...++.++.  ..+++++|+..|++++.++|..
T Consensus       213 ---------g~~~~A~~~~~~al~l~p-~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~  273 (292)
T 1qqe_A          213 ---------TDAVAAARTLQEGQSEDP-NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK  273 (292)
T ss_dssp             ---------TCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred             ---------CCHHHHHHHHHHHHhhCC-CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence                     889999999999999999 54442     345666664  4578999999999999998754

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.65  E-value=1.8e-15  Score=128.22  Aligned_cols=165  Identities=15%  Similarity=0.048  Sum_probs=129.4

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHH------HHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHH
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDV------LYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKA  105 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~------~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~ka  105 (259)
                      ...+..++  .. |++++|+..++++++..|.+++.      +..+|.++...+++              ++|+.+++++
T Consensus        79 ~~~i~~~~--~~-~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------~~Ai~~~~~a  141 (293)
T 3u3w_A           79 KDQVIMLC--KQ-KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDY--------------EYCILELKKL  141 (293)
T ss_dssp             HHHHHHHH--HT-TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCH--------------HHHHHHHHHH
T ss_pred             HHHHHHHH--HH-hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCH--------------HHHHHHHHHH
Confidence            34466677  56 99999999999999988888773      22356655555554              4999999999


Q ss_pred             HHhCCCChH------HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc-------cCCCChhHHHHHHHHHHHhhc
Q psy9159         106 MELAPNNSN------TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ-------MAPKDFTLYSLKGRYQYEISK  172 (259)
Q Consensus       106 l~~~P~~~~------~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~-------l~P~~~~~~~~lG~~~~~~~~  172 (259)
                      +++.+....      ++..+|.++...|++.          .|..+++++++       ..|....+++.+|.+|...  
T Consensus       142 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~--  209 (293)
T 3u3w_A          142 LNQQLTGIDVYQNLYIENAIANIYAENGYLK----------KGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD--  209 (293)
T ss_dssp             HHTCCCCSCTTHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHhcccccHHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH--
Confidence            997655443      6888999999999887          45677777773       2333456889999999885  


Q ss_pred             cchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC-----CcHHhHHHHHHHHHHhC-CHHHHHHHHHHHhcCCC
Q psy9159         173 LSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA-----PWKENQLLIAKCYIEAG-EYAKAVQWLDKAKAIPV  243 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~-----~~~~~~~~la~~~~~~g-~~~eA~~~~~kal~l~p  243 (259)
                                        |++++|+.++++|+++.+.     ....++.++|.+|..+| ++++|+++|++|+.+..
T Consensus       210 ------------------~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          210 ------------------SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             ------------------TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             ------------------hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence                              8899999999999998641     12678999999999999 47999999999998653

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.65  E-value=1.3e-15  Score=112.60  Aligned_cols=101  Identities=14%  Similarity=-0.061  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHH
Q psy9159         115 TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAE  194 (259)
Q Consensus       115 ~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  194 (259)
                      .++.+|.++...|++.          .|...++++++++|+++.+|+.+|.++...                    |+++
T Consensus        19 ~~~~~g~~~~~~g~~~----------~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--------------------g~~~   68 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLA----------EAALAFEAVCQKEPEREEAWRSLGLTQAEN--------------------EKDG   68 (121)
T ss_dssp             CHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------------------TCHH
T ss_pred             hHHHHHHHHHHcCCHH----------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--------------------CCHH
Confidence            4677888888888877          567899999999999999999999999875                    8899


Q ss_pred             HHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         195 DAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       195 eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      +|+.+|++|++++| ++..++..+|.+|..+|++++|+..++++++++|.+.
T Consensus        69 ~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           69 LAIIALNHARMLDP-KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence            99999999999999 7899999999999999999999999999999999765

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.65  E-value=5.4e-16  Score=115.66  Aligned_cols=103  Identities=18%  Similarity=0.272  Sum_probs=92.5

Q ss_pred             CChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCC
Q psy9159         111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDE  190 (259)
Q Consensus       111 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (259)
                      +.+.++..+|.++...|++.          +|+..|++||+++|+++.+|..+|.+|..+                    
T Consensus         6 d~A~a~~~lG~~~~~~~~~~----------~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~--------------------   55 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFE----------KAHVHYDKAIELDPSNITFYNNKAAVYFEE--------------------   55 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------
T ss_pred             HHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHhHHHHHHHh--------------------
Confidence            45667888999999999987          578999999999999999999999999885                    


Q ss_pred             CcHHHHHHHHHHHHhhCCCCcH-------HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         191 PTAEDAIANCLKAEELAPAPWK-------ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~~-------~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      |++++|+.+|++|++++| ++.       .++..+|.++..+|++++|+++|+++++.+|+
T Consensus        56 ~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           56 KKFAECVQFCEKAVEVGR-ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             TCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             hhHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            889999999999999998 432       47889999999999999999999999998874

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.64  E-value=1e-14  Score=126.03  Aligned_cols=172  Identities=6%  Similarity=-0.076  Sum_probs=140.5

Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q psy9159          47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGAN  126 (259)
Q Consensus        47 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~  126 (259)
                      +++++..+..++..+|+++.+|...+.++..++...            ++++++.+.++++++|.|..+|.+.+.++...
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~------------~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l  157 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN------------WARELELCARFLEADERNFHCWDYRRFVAAQA  157 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            789999999999999999999999999999988521            35999999999999999999999999999988


Q ss_pred             hchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q psy9159         127 GQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL  206 (259)
Q Consensus       127 ~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l  206 (259)
                      +...         ..+.+.++++|+.+|.|..+|+.+|.+...+.......      -.+..+.+.++++++++.+++.+
T Consensus       158 ~~~~---------~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~------~~~~~~~~~~~eEle~~~~ai~~  222 (331)
T 3dss_A          158 AVAP---------AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG------PQGRLPENVLLKELELVQNAFFT  222 (331)
T ss_dssp             TCCH---------HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------------CCCHHHHHHHHHHHHHHHHH
T ss_pred             CcCH---------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc------cccccchHHHHHHHHHHHHHHHh
Confidence            8631         14578899999999999999999999887652210000      00001125689999999999999


Q ss_pred             CCCCcHHhHHHHHHHHHHh-----------CCHHHHHHHHHHHhcCCCCCc
Q psy9159         207 APAPWKENQLLIAKCYIEA-----------GEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       207 ~P~~~~~~~~~la~~~~~~-----------g~~~eA~~~~~kal~l~p~~~  246 (259)
                      +| ++..+|+++..++...           +.+++++++++++++++|++.
T Consensus       223 ~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~  272 (331)
T 3dss_A          223 DP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK  272 (331)
T ss_dssp             ST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             CC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence            99 7788898777666665           468999999999999999774

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.64  E-value=3.4e-15  Score=111.29  Aligned_cols=123  Identities=13%  Similarity=0.054  Sum_probs=94.3

Q ss_pred             hcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhc
Q psy9159          59 NKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKC  138 (259)
Q Consensus        59 ~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~  138 (259)
                      ..+|.++..++.+|.++...|++.              +|+..++++++++|+++.++..+|.++...+++.        
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~--------------~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~--------   60 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYP--------------EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE--------   60 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--------
T ss_pred             CCccccHHHHHHHHHHHHHhCcHH--------------HHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHH--------
Confidence            346778888888888888888765              8888888888888888888888888888888776        


Q ss_pred             HHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCC-----cHH
Q psy9159         139 GVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAP-----WKE  213 (259)
Q Consensus       139 ~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~-----~~~  213 (259)
                        .+...++++++++|+++.+|+.+|.++...                    |++++|+.+|+++++++| +     ...
T Consensus        61 --~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------------------~~~~~A~~~~~~a~~~~p-~~~~~~~~~  117 (137)
T 3q49_B           61 --QALADCRRALELDGQSVKAHFFLGQCQLEM--------------------ESYDEAIANLQRAYSLAK-EQRLNFGDD  117 (137)
T ss_dssp             --HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHH-HTTCCCTTH
T ss_pred             --HHHHHHHHHHHhCchhHHHHHHHHHHHHHH--------------------hhHHHHHHHHHHHHHHCh-hHHHHHHHH
Confidence              456788888888888888888888888764                    778888888888888887 4     345


Q ss_pred             hHHHHHHHHHHhC
Q psy9159         214 NQLLIAKCYIEAG  226 (259)
Q Consensus       214 ~~~~la~~~~~~g  226 (259)
                      +...+..+.....
T Consensus       118 ~~~~l~~~~~~~~  130 (137)
T 3q49_B          118 IPSALRIAKKKRW  130 (137)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555554443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.64  E-value=1.2e-14  Score=106.51  Aligned_cols=128  Identities=23%  Similarity=0.281  Sum_probs=116.2

Q ss_pred             HHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh
Q psy9159          34 EIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS  113 (259)
Q Consensus        34 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~  113 (259)
                      .+..+.  .. |++++|+..++++++.+|+++.++..+|.++...|++.              +|+..+++++..+|+++
T Consensus         7 l~~~~~--~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------------~A~~~~~~~~~~~~~~~   69 (136)
T 2fo7_A            7 LGNAYY--KQ-GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD--------------EAIEYYQKALELDPRSA   69 (136)
T ss_dssp             HHHHHH--HH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHHCTTCH
T ss_pred             HHHHHH--Hc-CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHH--------------HHHHHHHHHHHHCCCch
Confidence            344455  45 99999999999999999999999999999999999875              99999999999999999


Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcH
Q psy9159         114 NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTA  193 (259)
Q Consensus       114 ~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  193 (259)
                      .++..+|.++...|++.          .+...++++++++|+++.++..+|.++...                    |++
T Consensus        70 ~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------------~~~  119 (136)
T 2fo7_A           70 EAWYNLGNAYYKQGDYD----------EAIEYYQKALELDPRSAEAWYNLGNAYYKQ--------------------GDY  119 (136)
T ss_dssp             HHHHHHHHHHHTTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHTT--------------------TCH
T ss_pred             HHHHHHHHHHHHhcCHH----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHH--------------------ccH
Confidence            99999999999988877          567889999999999999999999988764                    889


Q ss_pred             HHHHHHHHHHHhhCC
Q psy9159         194 EDAIANCLKAEELAP  208 (259)
Q Consensus       194 ~eAi~~~~kAi~l~P  208 (259)
                      ++|+.+++++++++|
T Consensus       120 ~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A          120 DEAIEYYQKALELDP  134 (136)
T ss_dssp             HHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHccCC
Confidence            999999999999999

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.64  E-value=5.5e-16  Score=136.24  Aligned_cols=190  Identities=14%  Similarity=0.107  Sum_probs=151.7

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHH
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP----DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM  106 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal  106 (259)
                      .+..+..++  .. |++++|+..++++++.+|+++    .+++.+|.+|...|++.              +|+.++++++
T Consensus        51 l~~~g~~~~--~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~--------------~A~~~~~~al  113 (411)
T 4a1s_A           51 LALEGERLC--NA-GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYN--------------KAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHH--HT-TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHH
T ss_pred             HHHHHHHHH--Hh-CcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHH
Confidence            345666666  56 999999999999999999998    58899999999999875              9999999999


Q ss_pred             Hh------CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHcc------CCCChhHHHHHHHHHHHhhc--
Q psy9159         107 EL------APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM------APKDFTLYSLKGRYQYEISK--  172 (259)
Q Consensus       107 ~~------~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l------~P~~~~~~~~lG~~~~~~~~--  172 (259)
                      ++      .|..+.++..+|.++...|++.          .+...+++++++      .|....++..+|.++...++  
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  183 (411)
T 4a1s_A          114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFD----------EAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHL  183 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccc
Confidence            88      6888899999999999999887          456777888777      66777899999999998888  


Q ss_pred             ---------------cchH----HHHHHH------------HHh--c--CCCCCcHHHHHHHHHHHHhhCCCCcHH----
Q psy9159         173 ---------------LSFF----ERKIAV------------LIV--S--DLDEPTAEDAIANCLKAEELAPAPWKE----  213 (259)
Q Consensus       173 ---------------~~~~----~~~~~~------------~~~--~--~~~~g~~~eAi~~~~kAi~l~P~~~~~----  213 (259)
                                     +...    .+++..            .+.  +  ....|++++|+.+|++++++.| ....    
T Consensus       184 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~  262 (411)
T 4a1s_A          184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR-EFGDRAAE  262 (411)
T ss_dssp             HHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHH
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-hcCCcHHH
Confidence                           4322    222110            000  0  0126999999999999999876 3333    


Q ss_pred             --hHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         214 --NQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       214 --~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                        ++..+|.+|..+|++++|++++++++++.|...+.
T Consensus       263 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  299 (411)
T 4a1s_A          263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER  299 (411)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence              78999999999999999999999999998766443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.64  E-value=1.2e-15  Score=117.71  Aligned_cols=105  Identities=10%  Similarity=-0.042  Sum_probs=93.2

Q ss_pred             hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC-------Chh-----HHHHHHHHHHHhhccchHHHHH
Q psy9159         113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK-------DFT-----LYSLKGRYQYEISKLSFFERKI  180 (259)
Q Consensus       113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~-------~~~-----~~~~lG~~~~~~~~~~~~~~~~  180 (259)
                      +..+...|..+...|++.          .|...|++||+++|+       +..     +|.++|.++..+          
T Consensus        11 a~~~~~~G~~l~~~g~~e----------eAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~L----------   70 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYD----------EAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL----------   70 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT----------
T ss_pred             HHHHHHHHHHHHHCCCHH----------HHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHC----------
Confidence            345677888888888887          578999999999999       444     999999998875          


Q ss_pred             HHHHhcCCCCCcHHHHHHHHHHHHhh-------CCCCcHHhH----HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         181 AVLIVSDLDEPTAEDAIANCLKAEEL-------APAPWKENQ----LLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       181 ~~~~~~~~~~g~~~eAi~~~~kAi~l-------~P~~~~~~~----~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                                |+|++|+.+|++|+++       +| ++..+|    +++|.++..+|++++|++.|++|++++|++..-
T Consensus        71 ----------gr~~eAl~~~~kAL~l~n~~~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A           71 ----------RSFDEALHSADKALHYFNRRGELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             ----------TCHHHHHHHHHHHHHHHHHHCCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             ----------CCHHHHHHHHHHHHHhhhccccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence                      8899999999999999       99 889999    999999999999999999999999999877653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.63  E-value=1.5e-15  Score=128.46  Aligned_cols=139  Identities=13%  Similarity=0.067  Sum_probs=119.6

Q ss_pred             CCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHH
Q psy9159          62 PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVV  141 (259)
Q Consensus        62 p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~  141 (259)
                      |.+++.++.+|.++...|++.              +|+..++++++++|+++.++..+|.++...|++.          .
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~--------------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~----------~   56 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYP--------------EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE----------Q   56 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH----------H
T ss_pred             ChhHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHH----------H
Confidence            678899999999999999875              9999999999999999999999999999999887          5


Q ss_pred             HHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcH-----HhH-
Q psy9159         142 FRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWK-----ENQ-  215 (259)
Q Consensus       142 a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~-----~~~-  215 (259)
                      |...++++++++|+++.+++.+|.++...                    |++++|+.+|+++++++| ++.     ..+ 
T Consensus        57 A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------------g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~  115 (281)
T 2c2l_A           57 ALADCRRALELDGQSVKAHFFLGQCQLEM--------------------ESYDEAIANLQRAYSLAK-EQRLNFGDDIPS  115 (281)
T ss_dssp             HHHHHHHHTTSCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHH-HTTCCCCSHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCc-cchhhHHHHHHH
Confidence            67899999999999999999999999875                    889999999999999998 331     111 


Q ss_pred             -------------------------HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         216 -------------------------LLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       216 -------------------------~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                                               ..++..  ..|++++|++.++++++++|.+..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~  170 (281)
T 2c2l_A          116 ALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDDGH  170 (281)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchhh
Confidence                                     122222  368999999999999999986643

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.63  E-value=7.6e-16  Score=134.31  Aligned_cols=190  Identities=14%  Similarity=0.108  Sum_probs=148.1

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHH
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP----DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM  106 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal  106 (259)
                      .+..+..++  .. |++++|+..++++++..|+++    .++..+|.++...|++.              +|+.++++++
T Consensus        12 l~~~g~~~~--~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------------~A~~~~~~al   74 (406)
T 3sf4_A           12 LALEGERLC--KS-GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA--------------KALEYHHHDL   74 (406)
T ss_dssp             HHHHHHHHH--HT-TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHH
T ss_pred             HHHHHHHHH--Hh-ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHH--------------HHHHHHHHHH
Confidence            356777777  66 999999999999999999995    67889999999999875              8888888888


Q ss_pred             Hh------CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC------hhHHHHHHHHHHHhhc--
Q psy9159         107 EL------APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD------FTLYSLKGRYQYEISK--  172 (259)
Q Consensus       107 ~~------~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~------~~~~~~lG~~~~~~~~--  172 (259)
                      ++      .|..+.++..+|.++...|++.          .+...+++++++.|..      +.++..+|.++...++  
T Consensus        75 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  144 (406)
T 3sf4_A           75 TLARTIGDQLGEAKASGNLGNTLKVLGNFD----------EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF  144 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcc
Confidence            77      5666788899999999999887          4667888888887764      4489999999988887  


Q ss_pred             ------------------cchHH----HHHHH------------HHh--c--CCCCCcHHHHHHHHHHHHhhCCCCcH--
Q psy9159         173 ------------------LSFFE----RKIAV------------LIV--S--DLDEPTAEDAIANCLKAEELAPAPWK--  212 (259)
Q Consensus       173 ------------------~~~~~----~~~~~------------~~~--~--~~~~g~~~eAi~~~~kAi~l~P~~~~--  212 (259)
                                        +....    +++..            .+.  +  ....|++++|+.++++++++.| ...  
T Consensus       145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~  223 (406)
T 3sf4_A          145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-EFGDK  223 (406)
T ss_dssp             C-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH-HTTCH
T ss_pred             cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-hcCCc
Confidence                              43222    21110            000  0  0125899999999999999866 332  


Q ss_pred             ----HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         213 ----ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       213 ----~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                          .++..+|.++..+|++++|++++++++++.|...+.
T Consensus       224 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  263 (406)
T 3sf4_A          224 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR  263 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence                278999999999999999999999999988766543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.63  E-value=3.2e-15  Score=130.98  Aligned_cols=165  Identities=10%  Similarity=0.023  Sum_probs=134.6

Q ss_pred             HHHHHhhcCCcCCHHHHHHHHHHHhhcC------CCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH
Q psy9159          34 EIDRLLYYGKKDDKAKAYNLTMELNNKQ------PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME  107 (259)
Q Consensus        34 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~  107 (259)
                      .+...+  .. |++++|+..++++++..      |..+.+++.+|.+|..+|++.              +|+.++++|++
T Consensus       107 ~g~~~~--~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~--------------~A~~~~~~al~  169 (378)
T 3q15_A          107 RGMYEF--DQ-KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTH--------------VSMYHILQALD  169 (378)
T ss_dssp             HHHHHH--HT-TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHH
T ss_pred             HHHHHH--HH-CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcH--------------HHHHHHHHHHH
Confidence            344444  45 99999999999998763      345778999999999999875              89999999998


Q ss_pred             hCCCC-------hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC------ChhHHHHHHHHHHHhhccc
Q psy9159         108 LAPNN-------SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK------DFTLYSLKGRYQYEISKLS  174 (259)
Q Consensus       108 ~~P~~-------~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~------~~~~~~~lG~~~~~~~~~~  174 (259)
                      +.+..       +.++..+|.++...|++.          .|.+.+++|+++.+.      ...+++.+|.++...    
T Consensus       170 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~----  235 (378)
T 3q15_A          170 IYQNHPLYSIRTIQSLFVIAGNYDDFKHYD----------KALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS----  235 (378)
T ss_dssp             HHHTSTTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHhCCCchhhHHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC----
Confidence            76542       446778888888888887          466788888876432      335788899988875    


Q ss_pred             hHHHHHHHHHhcCCCCCcHHHHHHHHHHHHh-----hCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         175 FFERKIAVLIVSDLDEPTAEDAIANCLKAEE-----LAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~-----l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                                      |++++|+.+|++|++     .+| ....++..+|.++..+|++++|++++++++++.+...
T Consensus       236 ----------------~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  295 (378)
T 3q15_A          236 ----------------GDDQMAVEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS  295 (378)
T ss_dssp             ----------------TCHHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC
T ss_pred             ----------------CCHHHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence                            889999999999999     788 5688899999999999999999999999999876643

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.63  E-value=2.7e-14  Score=103.53  Aligned_cols=122  Identities=25%  Similarity=0.339  Sum_probs=105.2

Q ss_pred             cCCCC-HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhc
Q psy9159          60 KQPND-PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKC  138 (259)
Q Consensus        60 ~~p~~-~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~  138 (259)
                      .+|.+ +.+++.+|.++...|++.              +|+..+++++..+|+++.++..+|.++...|++.        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--------   60 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDYD--------------EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD--------   60 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--------
T ss_pred             CCccccHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHH--------
Confidence            35655 788999999999988875              9999999999999999999999999999888877        


Q ss_pred             HHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHH
Q psy9159         139 GVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI  218 (259)
Q Consensus       139 ~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~l  218 (259)
                        .+...++++++++|+++.++..+|.++...                    |++++|+.+|+++++++| +...++..+
T Consensus        61 --~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------------~~~~~A~~~~~~~~~~~~-~~~~~~~~l  117 (125)
T 1na0_A           61 --EAIEYYQKALELDPNNAEAWYNLGNAYYKQ--------------------GDYDEAIEYYQKALELDP-NNAEAKQNL  117 (125)
T ss_dssp             --HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             --HHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------------------cCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence              567888999999999999999999988874                    789999999999999999 778899999


Q ss_pred             HHHHHHhC
Q psy9159         219 AKCYIEAG  226 (259)
Q Consensus       219 a~~~~~~g  226 (259)
                      |.++..+|
T Consensus       118 ~~~~~~~g  125 (125)
T 1na0_A          118 GNAKQKQG  125 (125)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcc
Confidence            99987765

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.62  E-value=1.4e-15  Score=128.42  Aligned_cols=191  Identities=14%  Similarity=0.107  Sum_probs=147.0

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHH
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP----DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKA  105 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~ka  105 (259)
                      ..+..+..++  .. |++++|+..++++++.+|+++    .++..+|.++...|++.              +|+.+++++
T Consensus         7 ~l~~~g~~~~--~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------------~A~~~~~~a   69 (338)
T 3ro2_A            7 ELALEGERLC--KS-GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA--------------KALEYHHHD   69 (338)
T ss_dssp             HHHHHHHHHH--HT-TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHH
T ss_pred             HHHHHHHHHH--Hh-ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHH
Confidence            3456677777  67 999999999999999999994    67889999999999875              888888888


Q ss_pred             HHh------CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChh------HHHHHHHHHHHhhc-
Q psy9159         106 MEL------APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT------LYSLKGRYQYEISK-  172 (259)
Q Consensus       106 l~~------~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~------~~~~lG~~~~~~~~-  172 (259)
                      +++      .|..+.++..+|.++...|++.          .+...+++++++.|....      ++..+|.++...++ 
T Consensus        70 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  139 (338)
T 3ro2_A           70 LTLARTIGDQLGEAKASGNLGNTLKVLGNFD----------EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS  139 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhhcccccHHHHHHHHHHHHHHHHccCHH----------HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcc
Confidence            877      5666788889999999998887          466788888887766543      89999999988877 


Q ss_pred             -------------------cchHH----HHHHH------------HHh--c--CCCCCcHHHHHHHHHHHHhhCCCCcH-
Q psy9159         173 -------------------LSFFE----RKIAV------------LIV--S--DLDEPTAEDAIANCLKAEELAPAPWK-  212 (259)
Q Consensus       173 -------------------~~~~~----~~~~~------------~~~--~--~~~~g~~~eAi~~~~kAi~l~P~~~~-  212 (259)
                                         +....    +.+..            .+.  +  ....|++++|+.++++++++.| ... 
T Consensus       140 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~  218 (338)
T 3ro2_A          140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-EFGD  218 (338)
T ss_dssp             SSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHTC
T ss_pred             cccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hcCC
Confidence                               43221    11110            000  0  0125899999999999998865 222 


Q ss_pred             -----HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         213 -----ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       213 -----~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                           .++..+|.++...|++++|++++++++++.|...+.
T Consensus       219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  259 (338)
T 3ro2_A          219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR  259 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch
Confidence                 378999999999999999999999999888766543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.62  E-value=1.1e-14  Score=117.88  Aligned_cols=166  Identities=14%  Similarity=0.029  Sum_probs=132.8

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      ..-+..+.  .. +++++|+..|+++.+.  .++++++.+|.+|.. +...          .++++|+.++++++  +++
T Consensus        22 ~~lg~~~~--~~-~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~----------~~~~~A~~~~~~A~--~~g   83 (212)
T 3rjv_A           22 YYLADTWV--SS-GDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQ----------ADYPQARQLAEKAV--EAG   83 (212)
T ss_dssp             HHHHHHHH--HH-TCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTS----------CCHHHHHHHHHHHH--HTT
T ss_pred             HHHHHHHh--cC-CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCC----------CCHHHHHHHHHHHH--HCC
Confidence            34444444  45 9999999999999874  789999999999988 5211          02359999999995  578


Q ss_pred             ChHHHHHHHHHHHH----hhchhhHHHHHhcHHHHHHHHHHHHccCC--CChhHHHHHHHHHHHhhccchHHHHHHHHHh
Q psy9159         112 NSNTQKWYGICVGA----NGQFQSLKEKIKCGVVFRDQMNKAIQMAP--KDFTLYSLKGRYQYEISKLSFFERKIAVLIV  185 (259)
Q Consensus       112 ~~~~~~~la~~~~~----~~~~~~~~~~~~~~~~a~~~~~kAl~l~P--~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~  185 (259)
                      ++.+++.+|.++..    .+++          .++...+++|++..|  +++.+++.||.+|..-               
T Consensus        84 ~~~a~~~Lg~~y~~g~g~~~d~----------~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g---------------  138 (212)
T 3rjv_A           84 SKSGEIVLARVLVNRQAGATDV----------AHAITLLQDAARDSESDAAVDAQMLLGLIYASG---------------  138 (212)
T ss_dssp             CHHHHHHHHHHHTCGGGSSCCH----------HHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT---------------
T ss_pred             CHHHHHHHHHHHHcCCCCccCH----------HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC---------------
Confidence            99999999999865    3333          367899999999999  4699999999988762               


Q ss_pred             cCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHh-C-----CHHHHHHHHHHHhcCCC
Q psy9159         186 SDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEA-G-----EYAKAVQWLDKAKAIPV  243 (259)
Q Consensus       186 ~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~-g-----~~~eA~~~~~kal~l~p  243 (259)
                       ....+++++|+.+|++|+++ | .++.++++||.+|... |     ++++|+++|++|++..+
T Consensus       139 -~g~~~d~~~A~~~~~~A~~~-~-~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          139 -VHGPEDDVKASEYFKGSSSL-S-RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             -SSSSCCHHHHHHHHHHHHHT-S-CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             -CCCCCCHHHHHHHHHHHHHc-C-CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence             11137899999999999999 5 4577899999999875 3     89999999999998753

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.61  E-value=3.3e-15  Score=106.59  Aligned_cols=108  Identities=19%  Similarity=0.148  Sum_probs=100.5

Q ss_pred             hCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcC
Q psy9159         108 LAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSD  187 (259)
Q Consensus       108 ~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~  187 (259)
                      ++|+++.++..+|.++...|++.          .+...++++++++|+++.+++.+|.++...                 
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~-----------------   53 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYT----------ESIDLFEKAIQLDPEESKYWLMKGKALYNL-----------------   53 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHH----------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-----------------
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHH----------HHHHHHHHHHHhCcCCHHHHHHHHHHHHHc-----------------
Confidence            47999999999999999998887          567899999999999999999999998875                 


Q ss_pred             CCCCcHHHHHHHHHHHHhhCCCC--cHHhHHHHHHHHHHh-CCHHHHHHHHHHHhcCCCCCc
Q psy9159         188 LDEPTAEDAIANCLKAEELAPAP--WKENQLLIAKCYIEA-GEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       188 ~~~g~~~eAi~~~~kAi~l~P~~--~~~~~~~la~~~~~~-g~~~eA~~~~~kal~l~p~~~  246 (259)
                         |++++|+.+|+++++++| .  ...++..+|.++..+ |++++|++++++++...|.++
T Consensus        54 ---~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           54 ---ERYEEAVDCYNYVINVIE-DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             ---TCHHHHHHHHHHHHHTSC-CTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             ---cCHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence               889999999999999999 7  789999999999999 999999999999999999865

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.61  E-value=5.7e-15  Score=110.07  Aligned_cols=108  Identities=18%  Similarity=0.264  Sum_probs=98.9

Q ss_pred             HhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhc
Q psy9159         107 ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVS  186 (259)
Q Consensus       107 ~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~  186 (259)
                      ..+|.++..+..+|.++...|++.          .+...++++++++|+++.+|+.+|.++...                
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~l~~~~~~~----------------   56 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYP----------EAAACYGRAITRNPLVAVYYTNRALCYLKM----------------   56 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----------------
T ss_pred             CCccccHHHHHHHHHHHHHhCcHH----------HHHHHHHHHHhhCcCcHHHHHHHHHHHHHh----------------
Confidence            467889999999999999999987          567899999999999999999999999875                


Q ss_pred             CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159         187 DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       187 ~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~  245 (259)
                          |++++|+.+|+++++++| +++.+++.+|.++..+|++++|++.|+++++++|++
T Consensus        57 ----~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  110 (137)
T 3q49_B           57 ----QQPEQALADCRRALELDG-QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  110 (137)
T ss_dssp             ----TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ----cCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence                889999999999999999 789999999999999999999999999999999873

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.61  E-value=2.3e-16  Score=143.40  Aligned_cols=138  Identities=14%  Similarity=0.150  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHH
Q psy9159          65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRD  144 (259)
Q Consensus        65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~  144 (259)
                      ++.+..+|.++...|++              ++|++.++++++++|+++.++..+|.++...|++.          +|..
T Consensus         6 a~~~~~lg~~~~~~g~~--------------~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~----------~A~~   61 (477)
T 1wao_1            6 AEELKTQANDYFKAKDY--------------ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG----------YALG   61 (477)
T ss_dssp             HTTSSSSSSSTTTTTCH--------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------HHHH
T ss_pred             HHHHHHHHHHHHHhCCH--------------HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHH----------HHHH
Confidence            34455566666666665              49999999999999999999999999999999987          5678


Q ss_pred             HHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHH--H
Q psy9159         145 QMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC--Y  222 (259)
Q Consensus       145 ~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~--~  222 (259)
                      .+++|++++|+++.+++.+|.++...                    |++++|+++|++|++++| ++..++..++.+  +
T Consensus        62 ~~~~al~l~p~~~~~~~~lg~~~~~~--------------------g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~  120 (477)
T 1wao_1           62 DATRAIELDKKYIKGYYRRAASNMAL--------------------GKFRAALRDYETVVKVKP-HDKDAKMKYQECNKI  120 (477)
T ss_dssp             HHHHHHHSCTTCHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence            99999999999999999999999886                    889999999999999999 678889999998  8


Q ss_pred             HHhCCHHHHHHHHH-----------HHhcCCCCCcc
Q psy9159         223 IEAGEYAKAVQWLD-----------KAKAIPVVSYE  247 (259)
Q Consensus       223 ~~~g~~~eA~~~~~-----------kal~l~p~~~~  247 (259)
                      ..+|++++|++.++           ++++++|....
T Consensus       121 ~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~  156 (477)
T 1wao_1          121 VKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG  156 (477)
T ss_dssp             HHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred             HHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence            99999999999999           88888887654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.60  E-value=7.1e-15  Score=109.53  Aligned_cols=115  Identities=15%  Similarity=0.022  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHH
Q psy9159          63 NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVF  142 (259)
Q Consensus        63 ~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a  142 (259)
                      +.+.++..+|.+++..|++.              +|++.|++||+++|+++.+|.++|.++..+|++.          .|
T Consensus         6 d~A~a~~~lG~~~~~~~~~~--------------~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~----------~A   61 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFE--------------KAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFA----------EC   61 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------HH
T ss_pred             HHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHH----------HH
Confidence            34567788999999998875              9999999999999999999999999999999987          56


Q ss_pred             HHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHH
Q psy9159         143 RDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQL  216 (259)
Q Consensus       143 ~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~  216 (259)
                      +..++++|+++|++...+..+|.++..+|..   ...          .|++++|+++|++++++.| + +....
T Consensus        62 ~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~---~~~----------~~~~~~A~~~~~kal~~~~-~-~~~~~  120 (127)
T 4gcn_A           62 VQFCEKAVEVGRETRADYKLIAKAMSRAGNA---FQK----------QNDLSLAVQWFHRSLSEFR-D-PELVK  120 (127)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---HHH----------TTCHHHHHHHHHHHHHHSC-C-HHHHH
T ss_pred             HHHHHHHHHhCcccchhhHHHHHHHHHHHHH---HHH----------cCCHHHHHHHHHHHHhhCc-C-HHHHH
Confidence            7899999999999877655555555444321   000          3899999999999999999 4 44433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.60  E-value=2.4e-14  Score=109.64  Aligned_cols=131  Identities=13%  Similarity=0.029  Sum_probs=114.6

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA  109 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~  109 (259)
                      .....+..++  .. |++++|+..+++++..+|+++.+++.+|.++...|++.              +|+..++++++++
T Consensus        15 ~~~~~a~~~~--~~-~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~--------------~A~~~~~~a~~~~   77 (166)
T 1a17_A           15 ELKTQANDYF--KA-KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG--------------YALGDATRAIELD   77 (166)
T ss_dssp             HHHHHHHHHH--HT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHH--Hc-cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhC
Confidence            3456666666  56 99999999999999999999999999999999999875              9999999999999


Q ss_pred             CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHH--HHHhhccchHHHHHHHHHhcC
Q psy9159         110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY--QYEISKLSFFERKIAVLIVSD  187 (259)
Q Consensus       110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~--~~~~~~~~~~~~~~~~~~~~~  187 (259)
                      |+++.++..+|.++...|++.          .+...++++++++|++..++..++..  +...                 
T Consensus        78 ~~~~~~~~~~a~~~~~~~~~~----------~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~-----------------  130 (166)
T 1a17_A           78 KKYIKGYYRRAASNMALGKFR----------AALRDYETVVKVKPHDKDAKMKYQECNKIVKQ-----------------  130 (166)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH-----------------
T ss_pred             cccHHHHHHHHHHHHHhccHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-----------------
Confidence            999999999999999999887          56789999999999999998766665  4332                 


Q ss_pred             CCCCcHHHHHHHHHHHHhhC
Q psy9159         188 LDEPTAEDAIANCLKAEELA  207 (259)
Q Consensus       188 ~~~g~~~eAi~~~~kAi~l~  207 (259)
                         |++++|+.++.++.++.
T Consensus       131 ---~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A          131 ---KAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             ---HHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHcccchHHHh
Confidence               77999999999887753

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.60  E-value=2.8e-14  Score=130.55  Aligned_cols=161  Identities=12%  Similarity=0.020  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-------hhchhcccCcHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHH
Q psy9159          48 AKAYNLTMELNNKQPNDPDVLYRLAKACHC-------LYDIKRRENDKEASEKYILQGIEYAKKAME-LAPNNSNTQKWY  119 (259)
Q Consensus        48 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-------~g~~~~~~~~~~~~~~~~~~A~~~~~kal~-~~P~~~~~~~~l  119 (259)
                      ++++..|++++..+|+++++|+.+|..+..       .|+..       ......++|+..+++|++ +.|+++.+|..+
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~-------~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~  327 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMN-------NAKLFSDEAANIYERAISTLLKKNMLLYFAY  327 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCH-------HHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchh-------hhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            588899999999999999999999999886       45542       111123489999999997 899999999999


Q ss_pred             HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh-hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHH
Q psy9159         120 GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF-TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIA  198 (259)
Q Consensus       120 a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~-~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~  198 (259)
                      +.++...|++.          .+...|+++++++|+++ .+|..+|.++.+.                    |++++|+.
T Consensus       328 ~~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--------------------~~~~~A~~  377 (530)
T 2ooe_A          328 ADYEESRMKYE----------KVHSIYNRLLAIEDIDPTLVYIQYMKFARRA--------------------EGIKSGRM  377 (530)
T ss_dssp             HHHHHHTTCHH----------HHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH--------------------HHHHHHHH
T ss_pred             HHHHHhcCCHH----------HHHHHHHHHhCccccCchHHHHHHHHHHHHh--------------------cCHHHHHH
Confidence            99998888876          56789999999999996 6999999987664                    67899999


Q ss_pred             HHHHHHhhCCCCcHHhHHHHHHH-HHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         199 NCLKAEELAPAPWKENQLLIAKC-YIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       199 ~~~kAi~l~P~~~~~~~~~la~~-~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      .|++|++..| .....+...+.+ +...|++++|...|+++++..|+++
T Consensus       378 ~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~  425 (530)
T 2ooe_A          378 IFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP  425 (530)
T ss_dssp             HHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH
Confidence            9999999988 556666655544 4469999999999999999998765

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.60  E-value=1.9e-14  Score=110.89  Aligned_cols=117  Identities=12%  Similarity=0.039  Sum_probs=96.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      +.+++|+..++++++.+|+++++|+++|.++..++++.    ...+.++.+++|+..|++||+++|+++.+|+.+|.++.
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~----~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFH----SISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccc----hhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999874    34457778999999999999999999999999999999


Q ss_pred             Hhhchhh-HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHH
Q psy9159         125 ANGQFQS-LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGR  165 (259)
Q Consensus       125 ~~~~~~~-~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~  165 (259)
                      .+|.+.. .....+...+|+++|++||+++|++..++..+..
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~  133 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            8863210 0111233447889999999999999866666543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.60  E-value=1e-14  Score=107.79  Aligned_cols=102  Identities=13%  Similarity=0.074  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHH
Q psy9159          66 DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQ  145 (259)
Q Consensus        66 ~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~  145 (259)
                      +.++.+|.++...|++.              +|+..++++++++|+++.+|+.+|.++...|++.          .|+..
T Consensus        18 ~~~~~~g~~~~~~g~~~--------------~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~----------~A~~~   73 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLA--------------EAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG----------LAIIA   73 (121)
T ss_dssp             SCHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH----------HHHHH
T ss_pred             hhHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH----------HHHHH
Confidence            34688999999999875              9999999999999999999999999999999887          57789


Q ss_pred             HHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcH
Q psy9159         146 MNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWK  212 (259)
Q Consensus       146 ~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~  212 (259)
                      ++++++++|+++.+++.+|.++...                    |++++|+.+|+++++++| ++.
T Consensus        74 ~~~al~l~P~~~~~~~~la~~~~~~--------------------g~~~~A~~~~~~al~~~P-~~~  119 (121)
T 1hxi_A           74 LNHARMLDPKDIAVHAALAVSHTNE--------------------HNANAALASLRAWLLSQP-QYE  119 (121)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCc-CCC
Confidence            9999999999999999999999886                    779999999999999999 543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.60  E-value=2e-14  Score=132.69  Aligned_cols=143  Identities=15%  Similarity=0.142  Sum_probs=127.3

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      ...+..+.  .. |++++|+..++++++.+|+++.+++.+|.+|...|++.              +|+..++++++++|+
T Consensus        27 ~~lg~~~~--~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--------------~A~~~~~~al~~~p~   89 (568)
T 2vsy_A           27 LMLADAEL--GM-GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHA--------------EAAVLLQQASDAAPE   89 (568)
T ss_dssp             HHHHHHHH--HH-TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHH--Hc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHhcCCC
Confidence            34455555  55 99999999999999999999999999999999999875              999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCC
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEP  191 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g  191 (259)
                      ++.++..+|.++...|++.          +|.+.++++++++|+++.++..+|.++...++.                 |
T Consensus        90 ~~~~~~~la~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-----------------g  142 (568)
T 2vsy_A           90 HPGIALWLGHALEDAGQAE----------AAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDW-----------------R  142 (568)
T ss_dssp             CHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC-----------------T
T ss_pred             CHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcc-----------------c
Confidence            9999999999999999887          567899999999999999999999999875332                 7


Q ss_pred             cHHHHHHHHHHHHhhCCCCcHHhHHHHH
Q psy9159         192 TAEDAIANCLKAEELAPAPWKENQLLIA  219 (259)
Q Consensus       192 ~~~eAi~~~~kAi~l~P~~~~~~~~~la  219 (259)
                      ++++|+.+|+++++.+| .....+..++
T Consensus       143 ~~~~A~~~~~~al~~~p-~~~~~~~~l~  169 (568)
T 2vsy_A          143 ALDVLSAQVRAAVAQGV-GAVEPFAFLS  169 (568)
T ss_dssp             THHHHHHHHHHHHHHTC-CCSCHHHHTT
T ss_pred             cHHHHHHHHHHHHhcCC-cccChHHHhC
Confidence            89999999999999999 6666666666

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.59  E-value=3.9e-14  Score=121.39  Aligned_cols=155  Identities=8%  Similarity=-0.016  Sum_probs=109.5

Q ss_pred             hHHHHHhhcCCcC--CHHHHHHHHHHHhhcCCCCHHHHHHHHHHH----HHhhchhcccCcHHHHHHHHHHHHHHHHHHH
Q psy9159          33 PEIDRLLYYGKKD--DKAKAYNLTMELNNKQPNDPDVLYRLAKAC----HCLYDIKRRENDKEASEKYILQGIEYAKKAM  106 (259)
Q Consensus        33 ~~~~~l~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~la~~~----~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal  106 (259)
                      .++..+.  .. |  ++++++..+..++..+|++..+|+..+.++    ...+..           ..++++++.+.+++
T Consensus        72 ~R~~~L~--~l-~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~-----------~~~~~EL~~~~~~l  137 (306)
T 3dra_A           72 YRFNILK--NL-PNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND-----------FDPYREFDILEAML  137 (306)
T ss_dssp             HHHHHHH--TC-TTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC-----------CCTHHHHHHHHHHH
T ss_pred             HHHHHHH--Hc-ccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc-----------CCHHHHHHHHHHHH
Confidence            4444454  44 6  999999999999999999999999999999    444210           01358999999999


Q ss_pred             HhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhc
Q psy9159         107 ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVS  186 (259)
Q Consensus       107 ~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~  186 (259)
                      +++|.|..+|.+.++++..++.+..        ....+.++++|++||.|..+|+.+|.+....+...            
T Consensus       138 ~~~pkny~aW~~R~~vl~~l~~~~~--------~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~------------  197 (306)
T 3dra_A          138 SSDPKNHHVWSYRKWLVDTFDLHND--------AKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA------------  197 (306)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCTTC--------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC------------
T ss_pred             HhCCCCHHHHHHHHHHHHHhcccCh--------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc------------
Confidence            9999999999999999998887641        13457788999999999999999988776543200            


Q ss_pred             CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHH
Q psy9159         187 DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIE  224 (259)
Q Consensus       187 ~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~  224 (259)
                        ....++++++++++++.++| ++..+|.+++.++..
T Consensus       198 --~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~  232 (306)
T 3dra_A          198 --TDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHER  232 (306)
T ss_dssp             --CHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHH
T ss_pred             --hhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHh
Confidence              00014555555555555555 444444444444433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.59  E-value=1e-14  Score=112.55  Aligned_cols=120  Identities=9%  Similarity=0.003  Sum_probs=90.7

Q ss_pred             CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh------------------CCCChHHHHHHHHHHHH
Q psy9159          64 DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL------------------APNNSNTQKWYGICVGA  125 (259)
Q Consensus        64 ~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~------------------~P~~~~~~~~la~~~~~  125 (259)
                      .+..+..+|..++..|++.              +|+..|++++.+                  +|.++.++.++|.++..
T Consensus        10 ~a~~~~~~G~~~~~~~~~~--------------~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~   75 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYK--------------EAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN   75 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3577888999999988875              999999999999                  66666777777777777


Q ss_pred             hhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHh
Q psy9159         126 NGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEE  205 (259)
Q Consensus       126 ~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~  205 (259)
                      .|++.          .|...++++|+++|+++.+|+.+|.++..+                    |++++|+.+|+++++
T Consensus        76 ~~~~~----------~A~~~~~~al~~~p~~~~a~~~~g~~~~~~--------------------g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           76 IGDLH----------EAEETSSEVLKREETNEKALFRRAKARIAA--------------------WKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHH
T ss_pred             cCcHH----------HHHHHHHHHHhcCCcchHHHHHHHHHHHHH--------------------hcHHHHHHHHHHHHh
Confidence            77766          456777777888888888888888777664                    677888888888888


Q ss_pred             hCCCCcH-HhHHHHHHHHHHhCCH
Q psy9159         206 LAPAPWK-ENQLLIAKCYIEAGEY  228 (259)
Q Consensus       206 l~P~~~~-~~~~~la~~~~~~g~~  228 (259)
                      ++| ++. .+...++.+....++.
T Consensus       126 l~p-~~~~~~~~~l~~~~~~~~~~  148 (162)
T 3rkv_A          126 NHP-AAASVVAREMKIVTERRAEK  148 (162)
T ss_dssp             HCG-GGHHHHHHHHHHHHHHHHHH
T ss_pred             cCC-CCHHHHHHHHHHHHHHHHHH
Confidence            888 555 5566666666555443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.58  E-value=9.4e-14  Score=99.71  Aligned_cols=114  Identities=13%  Similarity=0.062  Sum_probs=103.8

Q ss_pred             CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHH
Q psy9159          64 DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFR  143 (259)
Q Consensus        64 ~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~  143 (259)
                      .++.++.+|.++...|++.              +|+..+++++..+|+++.++..+|.++...|++.          .+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~--------------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----------~A~   58 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNID--------------DALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQ----------KAY   58 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH----------HHH
T ss_pred             hHHHHHHHHHHHHHcccHH--------------HHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHH----------HHH
Confidence            4678899999999999875              9999999999999999999999999999998887          567


Q ss_pred             HHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHH
Q psy9159         144 DQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCY  222 (259)
Q Consensus       144 ~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~  222 (259)
                      ..++++++++|+++.+++.+|.++...                    |++++|+.+|+++++++| ++..++..++.+.
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~a~~~~~~--------------------~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~  116 (118)
T 1elw_A           59 EDGCKTVDLKPDWGKGYSRKAAALEFL--------------------NRFEEAKRTYEEGLKHEA-NNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHH--------------------hhHHHHHHHHHHHHHcCC-CCHHHHHHHHHhh
Confidence            899999999999999999999998875                    889999999999999999 7788888888765

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.58  E-value=3e-15  Score=126.22  Aligned_cols=188  Identities=11%  Similarity=0.063  Sum_probs=147.4

Q ss_pred             CcCCHHHHHHHHHHHhhcCCCCHHHHHHH-------HHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHH
Q psy9159          43 KKDDKAKAYNLTMELNNKQPNDPDVLYRL-------AKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNT  115 (259)
Q Consensus        43 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l-------a~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~  115 (259)
                      . +++.+|.+.|.+++..+|+.+++|..+       +.++..+++..              +++..+++++.+.|+...+
T Consensus        19 ~-~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~--------------~a~~~~~~~l~l~p~~l~a   83 (282)
T 4f3v_A           19 P-MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSR--------------RNFGQLSGSVQISMSTLNA   83 (282)
T ss_dssp             T-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTG--------------GGTTHHHHTTTCCGGGGCC
T ss_pred             C-CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHH--------------HHHHHHHHHhcCChhhhhh
Confidence            5 899999999999999999999999999       78888877765              8899999999999997777


Q ss_pred             HHH---------------------HHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc
Q psy9159         116 QKW---------------------YGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS  174 (259)
Q Consensus       116 ~~~---------------------la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~  174 (259)
                      ++.                     ++.++...|++.          +|.+.++.++..+|.+. +++.+|.++++.++.+
T Consensus        84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~----------eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~  152 (282)
T 4f3v_A           84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYA----------DAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWT  152 (282)
T ss_dssp             EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHH----------HHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHH
T ss_pred             hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHH----------HHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHH
Confidence            666                     677788888877          45677777777888777 8888888777766543


Q ss_pred             hHHHHHH--------------HHHhcC--CCCCcHHHHHHHHHHHHhhC--CCCcHHhHHHHHHHHHHhCCHHHHHHHHH
Q psy9159         175 FFERKIA--------------VLIVSD--LDEPTAEDAIANCLKAEELA--PAPWKENQLLIAKCYIEAGEYAKAVQWLD  236 (259)
Q Consensus       175 ~~~~~~~--------------~~~~~~--~~~g~~~eAi~~~~kAi~l~--P~~~~~~~~~la~~~~~~g~~~eA~~~~~  236 (259)
                      .....+.              ....|.  -..|++++|+.+|++++...  |.....+++++|.|+..+|+.++|...|+
T Consensus       153 dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~  232 (282)
T 4f3v_A          153 DVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE  232 (282)
T ss_dssp             HHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            2222111              000000  11599999999999999755  62266789999999999999999999999


Q ss_pred             HHhcCCCCCccchhhhhhhcc
Q psy9159         237 KAKAIPVVSYESHDLSTTYSY  257 (259)
Q Consensus       237 kal~l~p~~~~~~~~~~~~~~  257 (259)
                      ++++.+|+ ++-...+.+-+|
T Consensus       233 ~a~a~~P~-~~~~~aL~~~~~  252 (282)
T 4f3v_A          233 WLQTTHPE-PKVAAALKDPSY  252 (282)
T ss_dssp             HHHHHSCC-HHHHHHHHCTTC
T ss_pred             HHHhcCCc-HHHHHHHhCCCC
Confidence            99999998 776666665554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=1.7e-15  Score=140.38  Aligned_cols=170  Identities=6%  Similarity=-0.077  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q psy9159          47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGAN  126 (259)
Q Consensus        47 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~  126 (259)
                      +++++..+.++++.+|++..+|+..+.++..++...            ++++++.+.++++++|.|..+|.+.++++...
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~------------~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l  156 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN------------WARELELCARFLEADERNFHCWDYRRFVAAQA  156 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc------------HHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence            999999999999999999999999999999998431            34999999999999999999999999999988


Q ss_pred             h-chhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHh
Q psy9159         127 G-QFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEE  205 (259)
Q Consensus       127 ~-~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~  205 (259)
                      + .++          .+.++++++|+++|.|..+|+.+|.++..+........      -+....+++++|++++.+|+.
T Consensus       157 ~~~~~----------~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~------~~~~~~~~~~eel~~~~~ai~  220 (567)
T 1dce_A          157 AVAPA----------EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP------QGRLPENVLLKELELVQNAFF  220 (567)
T ss_dssp             CCCHH----------HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS------CCSSCHHHHHHHHHHHHHHHH
T ss_pred             CCChH----------HHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc------cccccHHHHHHHHHHHHHHHh
Confidence            7 443          46788999999999999999999998877522100000      000012568999999999999


Q ss_pred             hCCCCcHHhHHHHHHHHHHhCCHHH------------HHHHHHHHhcCCCCC
Q psy9159         206 LAPAPWKENQLLIAKCYIEAGEYAK------------AVQWLDKAKAIPVVS  245 (259)
Q Consensus       206 l~P~~~~~~~~~la~~~~~~g~~~e------------A~~~~~kal~l~p~~  245 (259)
                      ++| ++..+|++++.++...+++++            |+..|++++.++|.+
T Consensus       221 ~~P-~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~  271 (567)
T 1dce_A          221 TDP-NDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM  271 (567)
T ss_dssp             HCS-SCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred             hCC-CCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence            999 778999999999999999777            677799999999874

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.57  E-value=1.2e-15  Score=132.48  Aligned_cols=143  Identities=11%  Similarity=0.015  Sum_probs=91.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh-----------------HHHHHHHHH
Q psy9159          60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-----------------NTQKWYGIC  122 (259)
Q Consensus        60 ~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~-----------------~~~~~la~~  122 (259)
                      ..|+.+..+..+|.+++..|++.              +|+..|++++++.|++.                 .++.++|.+
T Consensus       174 ~~~~~a~~~~~~g~~~~~~g~~~--------------~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~  239 (338)
T 2if4_A          174 ERIGAADRRKMDGNSLFKEEKLE--------------EAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSCCH--------------HHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHH--------------HHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHH
Confidence            34555778888999999888875              99999999999999987                 488999999


Q ss_pred             HHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q psy9159         123 VGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLK  202 (259)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~k  202 (259)
                      +...+++.          .|+..++++|+++|+++.+|+.+|.++..+                    |++++|+.+|++
T Consensus       240 ~~~~g~~~----------~A~~~~~~al~~~p~~~~a~~~lg~a~~~~--------------------g~~~~A~~~l~~  289 (338)
T 2if4_A          240 LIKLKRYD----------EAIGHCNIVLTEEEKNPKALFRRGKAKAEL--------------------GQMDSARDDFRK  289 (338)
T ss_dssp             HHTTTCCH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHTT--------------------TCHHHHHHHHHH
T ss_pred             HHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHH
Confidence            99999887          567899999999999999999999998774                    889999999999


Q ss_pred             HHhhCCCCcHHhHHHHHHH-HHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         203 AEELAPAPWKENQLLIAKC-YIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       203 Ai~l~P~~~~~~~~~la~~-~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      +++++| ++..++..|+.+ ....++.+++...|++++..+|.++.
T Consensus       290 al~l~p-~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          290 AQKYAP-DDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             TTC-------------------------------------------
T ss_pred             HHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            999999 778999999988 44557788999999999999998764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.57  E-value=4.3e-14  Score=114.42  Aligned_cols=154  Identities=14%  Similarity=0.050  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh
Q psy9159          48 AKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANG  127 (259)
Q Consensus        48 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~  127 (259)
                      .+|+..|+++.+.  .++++++.+|.+|...+++.              +|+.+++++++.  +++.+++.+|.++.. +
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~--------------~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~   63 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQ--------------KAEYWAQKAAAQ--GDGDALALLAQLKIR-N   63 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHT--TCHHHHHHHHHHTTS-S
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHc--CCHHHHHHHHHHHHc-C
Confidence            3678889998875  88999999999999988765              999999999875  689999999999876 4


Q ss_pred             chhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC
Q psy9159         128 QFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA  207 (259)
Q Consensus       128 ~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~  207 (259)
                      ...      .+..++...+++|  .++.++.+++.||.+|..-                ....+++++|+.+|++|++..
T Consensus        64 g~~------~~~~~A~~~~~~A--~~~g~~~a~~~Lg~~y~~g----------------~g~~~d~~~A~~~~~~A~~~~  119 (212)
T 3rjv_A           64 PQQ------ADYPQARQLAEKA--VEAGSKSGEIVLARVLVNR----------------QAGATDVAHAITLLQDAARDS  119 (212)
T ss_dssp             TTS------CCHHHHHHHHHHH--HHTTCHHHHHHHHHHHTCG----------------GGSSCCHHHHHHHHHHHTSST
T ss_pred             CCC------CCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHcC----------------CCCccCHHHHHHHHHHHHHcC
Confidence            111      1222678899999  4578999999999988541                111378999999999999998


Q ss_pred             CCC--cHHhHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCCCc
Q psy9159         208 PAP--WKENQLLIAKCYIE----AGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       208 P~~--~~~~~~~la~~~~~----~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      | .  ++.++++||.+|..    .+++++|+++|++++++ |.++
T Consensus       120 ~-~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~  162 (212)
T 3rjv_A          120 E-SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTG  162 (212)
T ss_dssp             T-SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTT
T ss_pred             C-CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCH
Confidence            7 3  37899999999999    89999999999999998 4444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.56  E-value=1e-14  Score=127.13  Aligned_cols=195  Identities=13%  Similarity=0.036  Sum_probs=138.3

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHhhchhcc------cCcHHHHHHHHHHHHHHHHHHHHh-
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPND------PDVLYRLAKACHCLYDIKRR------ENDKEASEKYILQGIEYAKKAMEL-  108 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~~------~~~~~~~~~~~~~A~~~~~kal~~-  108 (259)
                      .. |++++|+..+++++...|..      +.++..+|.+|...|+....      .....+....+++|+.++++++++ 
T Consensus        99 ~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~  177 (406)
T 3sf4_A           99 VL-GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV  177 (406)
T ss_dssp             HT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hc-CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            45 99999999999998876654      45888899999888871100      001124455577999999999887 


Q ss_pred             -----CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChh------HHHHHHHHHHHhhccchHH
Q psy9159         109 -----APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT------LYSLKGRYQYEISKLSFFE  177 (259)
Q Consensus       109 -----~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~------~~~~lG~~~~~~~~~~~~~  177 (259)
                           .|....++..+|.++...|++.          .+...+++++++.|+...      ++..+|.++...++.....
T Consensus       178 ~~~~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  247 (406)
T 3sf4_A          178 TALGDRAAQGRAFGNLGNTHYLLGNFR----------DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  247 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTBHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhccCcHHHHHHHHHHHHHHHHccCHH----------HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence                 4555667888899998888887          467888888888777665      8999999998877653222


Q ss_pred             HHHHHHH----------------h--c--CCCCCcHHHHHHHHHHHHhhCCCCc------HHhHHHHHHHHHHhCCHHHH
Q psy9159         178 RKIAVLI----------------V--S--DLDEPTAEDAIANCLKAEELAPAPW------KENQLLIAKCYIEAGEYAKA  231 (259)
Q Consensus       178 ~~~~~~~----------------~--~--~~~~g~~~eAi~~~~kAi~l~P~~~------~~~~~~la~~~~~~g~~~eA  231 (259)
                      ..+..++                .  +  ....|++++|+.+|++++++.| ..      ..++..+|.+|..+|++++|
T Consensus       248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ-ELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            1111100                0  0  0125888888888888888765 22      45688888888888888888


Q ss_pred             HHHHHHHhcCCCCCccc
Q psy9159         232 VQWLDKAKAIPVVSYES  248 (259)
Q Consensus       232 ~~~~~kal~l~p~~~~~  248 (259)
                      ++++++++++.+...+.
T Consensus       327 ~~~~~~al~~~~~~~~~  343 (406)
T 3sf4_A          327 MHFAEKHLEISREVGDK  343 (406)
T ss_dssp             HHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            88888888877555433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=5.6e-14  Score=105.47  Aligned_cols=119  Identities=12%  Similarity=0.070  Sum_probs=84.2

Q ss_pred             hcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhchhhHHHH
Q psy9159          59 NKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN---SNTQKWYGICVGANGQFQSLKEK  135 (259)
Q Consensus        59 ~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~---~~~~~~la~~~~~~~~~~~~~~~  135 (259)
                      ..+|.++..++.+|..+...|++.              +|+..++++++++|++   +.++..+|.++...+++.     
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~--------------~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----   82 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYG--------------GALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYD-----   82 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHH--------------HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHH-----
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHH--------------HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHH-----
Confidence            345677777777777777777764              7777777777777776   677777777777776665     


Q ss_pred             HhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhH
Q psy9159         136 IKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQ  215 (259)
Q Consensus       136 ~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~  215 (259)
                           ++...++++++++|+++.+++.+|.++...                    |++++|+.+|+++++++| ++..++
T Consensus        83 -----~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------------------~~~~~A~~~~~~al~~~p-~~~~~~  136 (148)
T 2dba_A           83 -----KAETEASKAIEKDGGDVKALYRRSQALEKL--------------------GRLDQAVLDLQRCVSLEP-KNKVFQ  136 (148)
T ss_dssp             -----HHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHCS-SCHHHH
T ss_pred             -----HHHHHHHHHHhhCccCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHcCC-CcHHHH
Confidence                 455677777777777777777777777664                    667777777777777777 556666


Q ss_pred             HHHHHHH
Q psy9159         216 LLIAKCY  222 (259)
Q Consensus       216 ~~la~~~  222 (259)
                      ..++.+.
T Consensus       137 ~~l~~~~  143 (148)
T 2dba_A          137 EALRNIS  143 (148)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6555543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.56  E-value=1.3e-14  Score=111.92  Aligned_cols=113  Identities=11%  Similarity=0.071  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC-------ChH-----HHHHHHHHHHHhhchhhH
Q psy9159          65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN-------NSN-----TQKWYGICVGANGQFQSL  132 (259)
Q Consensus        65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~-------~~~-----~~~~la~~~~~~~~~~~~  132 (259)
                      .+.+..+|..++..|++.              +|+..|++||+++|+       +..     +|.++|.++..+|++.. 
T Consensus        11 a~~~~~~G~~l~~~g~~e--------------eAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~e-   75 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYD--------------EAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDE-   75 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHH-
T ss_pred             HHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHH-
Confidence            466788889999888875              999999999999999       444     99999999999999984 


Q ss_pred             HHHHhcHHHHHHHHHHHHcc-------CCCChhHH----HHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH
Q psy9159         133 KEKIKCGVVFRDQMNKAIQM-------APKDFTLY----SLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL  201 (259)
Q Consensus       133 ~~~~~~~~~a~~~~~kAl~l-------~P~~~~~~----~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~  201 (259)
                               ++..+++||++       +|+++.+|    +.+|.++..+                    |++++|+.+|+
T Consensus        76 ---------Al~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~l--------------------gr~eEAl~~y~  126 (159)
T 2hr2_A           76 ---------ALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGL--------------------GRGAEAMPEFK  126 (159)
T ss_dssp             ---------HHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHC--------------------CCHHHHHHHHH
Confidence                     44555566655       99999999    9999999875                    88999999999


Q ss_pred             HHHhhCCCCcHHhHHHHHHHH
Q psy9159         202 KAEELAPAPWKENQLLIAKCY  222 (259)
Q Consensus       202 kAi~l~P~~~~~~~~~la~~~  222 (259)
                      +|++++| ....+.-.+..+.
T Consensus       127 kAlel~p-~d~~~~~~~~~~~  146 (159)
T 2hr2_A          127 KVVEMIE-ERKGETPGKERMM  146 (159)
T ss_dssp             HHHHHHH-HCCSCCTTHHHHH
T ss_pred             HHHhcCC-CcHHHHHHHHHHH
Confidence            9999999 4555544444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.56  E-value=4.2e-15  Score=118.60  Aligned_cols=123  Identities=10%  Similarity=-0.095  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh----------------hH
Q psy9159          96 LQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF----------------TL  159 (259)
Q Consensus        96 ~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~----------------~~  159 (259)
                      +++.+.+.......+..+..+..+|.++...+++.          .|...|++++++.|+++                .+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~   90 (198)
T 2fbn_A           21 GAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEIN----------EAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC   90 (198)
T ss_dssp             -CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred             cccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence            35666666666666677788888999999998887          56789999999999998                89


Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159         160 YSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK  239 (259)
Q Consensus       160 ~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal  239 (259)
                      ++.+|.++...                    |++++|+.+++++++++| ++..+++.+|.+|..+|++++|+++|++++
T Consensus        91 ~~~la~~~~~~--------------------~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  149 (198)
T 2fbn_A           91 NLNLATCYNKN--------------------KDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAA  149 (198)
T ss_dssp             HHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--------------------cCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            99999998875                    889999999999999999 789999999999999999999999999999


Q ss_pred             cCCCCCccch
Q psy9159         240 AIPVVSYESH  249 (259)
Q Consensus       240 ~l~p~~~~~~  249 (259)
                      +++|.+++-.
T Consensus       150 ~~~p~~~~~~  159 (198)
T 2fbn_A          150 SLNPNNLDIR  159 (198)
T ss_dssp             HHSTTCHHHH
T ss_pred             HHCCCcHHHH
Confidence            9999876543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.55  E-value=4e-14  Score=104.17  Aligned_cols=108  Identities=21%  Similarity=0.237  Sum_probs=99.2

Q ss_pred             CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC
Q psy9159         109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL  188 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~  188 (259)
                      .|.++.++..+|.++...+++.          .+...++++++++|+++.+++.+|.++...                  
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~la~~~~~~------------------   63 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYP----------QAMKHYTEAIKRNPKDAKLYSNRAACYTKL------------------   63 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSH----------HHHHHHHHHHTTCTTCHHHHHHHHHHHTTT------------------
T ss_pred             CcccHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHh------------------
Confidence            4778889999999999999887          567899999999999999999999988664                  


Q ss_pred             CCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         189 DEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       189 ~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                        |++++|+.+|+++++++| .+..++..+|.++..+|++++|+++++++++++|.+.+
T Consensus        64 --~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~  119 (133)
T 2lni_A           64 --LEFQLALKDCEECIQLEP-TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKE  119 (133)
T ss_dssp             --TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTH
T ss_pred             --ccHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchH
Confidence              889999999999999999 77899999999999999999999999999999987654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.55  E-value=1.2e-13  Score=99.12  Aligned_cols=106  Identities=16%  Similarity=0.125  Sum_probs=96.3

Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCC
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEP  191 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g  191 (259)
                      .+..+..+|.++...|++.          .+...++++++++|+++.++..+|.++...                    |
T Consensus         3 ~~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------------------~   52 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNID----------DALQCYSEAIKLDPHNHVLYSNRSAAYAKK--------------------G   52 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------------T
T ss_pred             hHHHHHHHHHHHHHcccHH----------HHHHHHHHHHHHCCCcHHHHHHHHHHHHhh--------------------c
Confidence            4567788899988888887          567899999999999999999999999875                    7


Q ss_pred             cHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         192 TAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       192 ~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                      ++++|+.+++++++++| .+..++..+|.++..+|++++|++.++++++++|.++..
T Consensus        53 ~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  108 (118)
T 1elw_A           53 DYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL  108 (118)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             cHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHH
Confidence            89999999999999999 779999999999999999999999999999999987653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=8.4e-14  Score=104.48  Aligned_cols=115  Identities=10%  Similarity=0.010  Sum_probs=103.9

Q ss_pred             HhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC---hhHHHHHHHHHHHhhccchHHHHHHHH
Q psy9159         107 ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD---FTLYSLKGRYQYEISKLSFFERKIAVL  183 (259)
Q Consensus       107 ~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~---~~~~~~lG~~~~~~~~~~~~~~~~~~~  183 (259)
                      ..+|+++..+..+|..+...+++.          .+...++++++++|++   ..+++.+|.++...             
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~-------------   78 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYG----------GALAAYTQALGLDATPQDQAVLHRNRAACHLKL-------------   78 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHH----------HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT-------------
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH-------------
Confidence            467889999999999999999887          5678999999999998   89999999998875             


Q ss_pred             HhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         184 IVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       184 ~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                             |++++|+.+++++++++| ++..+++.+|.++..+|++++|+++++++++++|.+.+-...+
T Consensus        79 -------~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  139 (148)
T 2dba_A           79 -------EDYDKAETEASKAIEKDG-GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL  139 (148)
T ss_dssp             -------TCHHHHHHHHHHHHHHTS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             -------ccHHHHHHHHHHHHhhCc-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence                   889999999999999999 7799999999999999999999999999999999887655443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.54  E-value=4.4e-15  Score=130.44  Aligned_cols=187  Identities=12%  Similarity=0.072  Sum_probs=142.9

Q ss_pred             CCcCCHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh------C
Q psy9159          42 GKKDDKAKAYNLTMELNNK------QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL------A  109 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~------~  109 (259)
                      .. |++++|+..+++++..      .|..+.++..+|.+|...|++.              +|+..+++++++      .
T Consensus        98 ~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------------~A~~~~~~al~~~~~~~~~  162 (411)
T 4a1s_A           98 YL-GDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFD--------------EAAICCERHLTLARQLGDR  162 (411)
T ss_dssp             HH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHHTCH
T ss_pred             HC-CCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHHHHHhhch
Confidence            45 9999999999999987      6888899999999999999875              899999999888      6


Q ss_pred             CCChHHHHHHHHHHHHhhc----------hhhHHHHHhcHHHHHHHHHHHHccC------CCChhHHHHHHHHHHHhhcc
Q psy9159         110 PNNSNTQKWYGICVGANGQ----------FQSLKEKIKCGVVFRDQMNKAIQMA------PKDFTLYSLKGRYQYEISKL  173 (259)
Q Consensus       110 P~~~~~~~~la~~~~~~~~----------~~~~~~~~~~~~~a~~~~~kAl~l~------P~~~~~~~~lG~~~~~~~~~  173 (259)
                      |....++..+|.++...|+          ...+...   ...+...+++++++.      |....++..+|.++...++.
T Consensus       163 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  239 (411)
T 4a1s_A          163 LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA---LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF  239 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence            7778889999999999988          2222111   224566777776653      34456888999988888775


Q ss_pred             chH----HHHHHH------------HHh--c--CCCCCcHHHHHHHHHHHHhhCCCCc------HHhHHHHHHHHHHhCC
Q psy9159         174 SFF----ERKIAV------------LIV--S--DLDEPTAEDAIANCLKAEELAPAPW------KENQLLIAKCYIEAGE  227 (259)
Q Consensus       174 ~~~----~~~~~~------------~~~--~--~~~~g~~~eAi~~~~kAi~l~P~~~------~~~~~~la~~~~~~g~  227 (259)
                      +..    .+++..            .+.  +  ....|++++|+.+|++++++.| ..      ..++..+|.++..+|+
T Consensus       240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~  318 (411)
T 4a1s_A          240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV-ELGEREVEAQSCYSLGNTYTLLHE  318 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCC
Confidence            422    222110            000  0  1236999999999999999987 33      5679999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcc
Q psy9159         228 YAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       228 ~~eA~~~~~kal~l~p~~~~  247 (259)
                      +++|++++++++++.+...+
T Consensus       319 ~~~A~~~~~~al~~~~~~~~  338 (411)
T 4a1s_A          319 FNTAIEYHNRHLAIAQELGD  338 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHCCC
Confidence            99999999999998765543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.54  E-value=4.6e-14  Score=111.77  Aligned_cols=158  Identities=10%  Similarity=-0.020  Sum_probs=124.4

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH------hCCCChHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME------LAPNNSNT  115 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~------~~P~~~~~  115 (259)
                      .. |++++|...++......+..+.++..+|.++...|++.              +|+..++++++      ..|..+.+
T Consensus         4 ~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------------~A~~~~~~al~~~~~~~~~~~~~~~   68 (203)
T 3gw4_A            4 EA-HDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFD--------------EARASFQALQQQAQKSGDHTAEHRA   68 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             cc-ccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHH--------------HHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            45 99999999655555544478899999999999999875              89999999988      55667778


Q ss_pred             HHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHcc---CCC----ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC
Q psy9159         116 QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM---APK----DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL  188 (259)
Q Consensus       116 ~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l---~P~----~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~  188 (259)
                      +..+|.++...|++.          .+...+++++++   .|+    ...++..+|.++...                  
T Consensus        69 ~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~------------------  120 (203)
T 3gw4_A           69 LHQVGMVERMAGNWD----------AARRCFLEERELLASLPEDPLAASANAYEVATVALHF------------------  120 (203)
T ss_dssp             HHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH------------------
T ss_pred             HHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh------------------
Confidence            889999999999887          456777888877   443    346688899888775                  


Q ss_pred             CCCcHHHHHHHHHHHHhhCCC--Cc---HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         189 DEPTAEDAIANCLKAEELAPA--PW---KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       189 ~~g~~~eAi~~~~kAi~l~P~--~~---~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                        |++++|+.++++++++.+.  +.   ..++..+|.++...|++++|++.+++++++...
T Consensus       121 --g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          121 --GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             --CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence              8899999999999986421  11   234689999999999999999999999987544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.54  E-value=2.8e-14  Score=110.10  Aligned_cols=103  Identities=14%  Similarity=0.033  Sum_probs=93.3

Q ss_pred             hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHcc------------------CCCChhHHHHHHHHHHHhhccc
Q psy9159         113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM------------------APKDFTLYSLKGRYQYEISKLS  174 (259)
Q Consensus       113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l------------------~P~~~~~~~~lG~~~~~~~~~~  174 (259)
                      +..+...|..+...|++.          .|...|+++|++                  +|.++.+|+.+|.++..+    
T Consensus        11 a~~~~~~G~~~~~~~~~~----------~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~----   76 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYK----------EAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI----   76 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            456778888888888887          567888999998                  777889999999999886    


Q ss_pred             hHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         175 FFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                                      |++++|+.+++++++++| +++.+++.+|.+|..+|++++|+..|+++++++|.++
T Consensus        77 ----------------~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           77 ----------------GDLHEAEETSSEVLKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             ----------------TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             ----------------CcHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence                            889999999999999999 7899999999999999999999999999999998877

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.53  E-value=4.6e-14  Score=123.59  Aligned_cols=178  Identities=16%  Similarity=0.151  Sum_probs=135.7

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCC-------HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh-
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPND-------PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-  113 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~-  113 (259)
                      .. |++++|+..++++++..+..       +.++..+|.+|..+|++.              +|+.++++++++.|... 
T Consensus       155 ~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--------------~A~~~~~~al~~~~~~~~  219 (383)
T 3ulq_A          155 YM-KQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYE--------------DAISHFQKAYSMAEAEKQ  219 (383)
T ss_dssp             HT-TCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHTTC
T ss_pred             Hc-CCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHH--------------HHHHHHHHHHHHHHHcCC
Confidence            45 99999999999999875443       458888999999988875              99999999998876554 


Q ss_pred             -----HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc-----cC-CCChhHHHHHHHHHHHhhccch----HHH
Q psy9159         114 -----NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ-----MA-PKDFTLYSLKGRYQYEISKLSF----FER  178 (259)
Q Consensus       114 -----~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~-----l~-P~~~~~~~~lG~~~~~~~~~~~----~~~  178 (259)
                           .++..+|.++...|++.          .|..++++|++     .+ |..+.++..+|.++...++.+.    +.+
T Consensus       220 ~~~~~~~~~~lg~~y~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  289 (383)
T 3ulq_A          220 PQLMGRTLYNIGLCKNSQSQYE----------DAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK  289 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                 47888999999998887          56788899988     56 8889999999999998876542    222


Q ss_pred             HHHHH-------------Hhc--CCCCCc---HHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         179 KIAVL-------------IVS--DLDEPT---AEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       179 ~~~~~-------------~~~--~~~~g~---~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                      ++...             ..+  ....|+   +++|+..++++ ...| ....++..+|.+|..+|++++|.++++++++
T Consensus       290 al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~-~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          290 GMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYA-DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            22110             000  012455   77777777776 3334 4456788999999999999999999999998


Q ss_pred             CCCCCc
Q psy9159         241 IPVVSY  246 (259)
Q Consensus       241 l~p~~~  246 (259)
                      +...-.
T Consensus       368 ~~~~i~  373 (383)
T 3ulq_A          368 VRQLIQ  373 (383)
T ss_dssp             HHTSCS
T ss_pred             HHHHhh
Confidence            775543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.53  E-value=2.2e-14  Score=121.04  Aligned_cols=155  Identities=15%  Similarity=0.089  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChH------
Q psy9159          47 KAKAYNLTMELNNK------QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSN------  114 (259)
Q Consensus        47 ~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~------  114 (259)
                      +++|+..+++++..      .|..+.++..+|.++...|++.              +|+.++++++++.|....      
T Consensus       159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------~A~~~~~~a~~~~~~~~~~~~~~~  224 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR--------------DAVIAHEQRLLIAKEFGDKAAERR  224 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHH--------------HHHHHHHHHHHHHHhcCChHHHHH
Confidence            99999999998775      3445668888999999988875              899999999988766544      


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC------hhHHHHHHHHHHHhhccchHHHHHHHHHhcCC
Q psy9159         115 TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD------FTLYSLKGRYQYEISKLSFFERKIAVLIVSDL  188 (259)
Q Consensus       115 ~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~------~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~  188 (259)
                      ++..+|.++...|++.          .+...+++++++.|..      ..++..+|.++...                  
T Consensus       225 ~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~------------------  276 (338)
T 3ro2_A          225 AYSNLGNAYIFLGEFE----------TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL------------------  276 (338)
T ss_dssp             HHHHHHHHHHHHTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------------
T ss_pred             HHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh------------------
Confidence            7888888888888876          5678888888887766      67788888888774                  


Q ss_pred             CCCcHHHHHHHHHHHHhhCCCCc------HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         189 DEPTAEDAIANCLKAEELAPAPW------KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       189 ~~g~~~eAi~~~~kAi~l~P~~~------~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                        |++++|+.++++++++.| ..      ..++..+|.+|..+|++++|++++++++++.+...
T Consensus       277 --g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  337 (338)
T 3ro2_A          277 --QDYEKAIDYHLKHLAIAQ-ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG  337 (338)
T ss_dssp             --TCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred             --cCHHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence              889999999999999865 22      34788999999999999999999999999987543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.52  E-value=5.4e-15  Score=133.52  Aligned_cols=123  Identities=11%  Similarity=0.037  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC---------------hhHH
Q psy9159          96 LQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD---------------FTLY  160 (259)
Q Consensus        96 ~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~---------------~~~~  160 (259)
                      ++|++.++++++.+|+++.++..+|.++...+++.          .|...|++|++++|++               ..+|
T Consensus       251 ~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~----------~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~  320 (457)
T 1kt0_A          251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYM----------QAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF  320 (457)
T ss_dssp             ECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred             ccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHH----------HHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH
Confidence            47788888999999999999999999999999987          5778999999999999               6899


Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         161 SLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       161 ~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                      +++|.++..+                    |++++|+.+|++|++++| ++..+++++|.+|..+|++++|+..|+++++
T Consensus       321 ~nla~~~~~~--------------------g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~  379 (457)
T 1kt0_A          321 LNLAMCYLKL--------------------REYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  379 (457)
T ss_dssp             HHHHHHHHHT--------------------TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHh--------------------cCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            9999999885                    889999999999999999 7899999999999999999999999999999


Q ss_pred             CCCCCccch
Q psy9159         241 IPVVSYESH  249 (259)
Q Consensus       241 l~p~~~~~~  249 (259)
                      ++|.+.+-.
T Consensus       380 l~P~~~~a~  388 (457)
T 1kt0_A          380 VNPQNKAAR  388 (457)
T ss_dssp             TC----CHH
T ss_pred             hCCCCHHHH
Confidence            999887543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.52  E-value=1.1e-13  Score=101.93  Aligned_cols=109  Identities=14%  Similarity=0.036  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh---hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCC
Q psy9159         114 NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF---TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDE  190 (259)
Q Consensus       114 ~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~---~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (259)
                      .+++.+|.++...|++.          .+...++++++.+|+++   .+++.+|.+++..                    
T Consensus         3 ~~~~~~a~~~~~~~~~~----------~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~--------------------   52 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYD----------DASQLFLSFLELYPNGVYTPNALYWLGESYYAT--------------------   52 (129)
T ss_dssp             CCHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT--------------------
T ss_pred             HHHHHHHHHHHHhCCHH----------HHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh--------------------
Confidence            45678888888888887          56789999999999999   7999999999875                    


Q ss_pred             CcHHHHHHHHHHHHhhCCCCc---HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhh
Q psy9159         191 PTAEDAIANCLKAEELAPAPW---KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLST  253 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~---~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~  253 (259)
                      |++++|+.+|+++++.+| ++   +.+++.+|.++..+|++++|++.|+++++..|+++.......
T Consensus        53 ~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~  117 (129)
T 2xev_A           53 RNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE  117 (129)
T ss_dssp             TCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            889999999999999999 67   788999999999999999999999999999998876555443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.52  E-value=2.1e-13  Score=98.68  Aligned_cols=110  Identities=22%  Similarity=0.323  Sum_probs=96.6

Q ss_pred             hCCCC-hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhc
Q psy9159         108 LAPNN-SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVS  186 (259)
Q Consensus       108 ~~P~~-~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~  186 (259)
                      .+|.+ +.++..+|.++...+++.          .+...++++++.+|+++.+++.+|.++...                
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----------------   56 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDYD----------EAIEYYQKALELDPNNAEAWYNLGNAYYKQ----------------   56 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----------------
T ss_pred             CCccccHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHCcCcHHHHHHHHHHHHHh----------------
Confidence            46766 778889999999888887          567899999999999999999999998874                


Q ss_pred             CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         187 DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       187 ~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                          |++++|+.+|+++++++| .....+..+|.++...|++++|+++++++++++|.+++.
T Consensus        57 ----~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  113 (125)
T 1na0_A           57 ----GDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA  113 (125)
T ss_dssp             ----TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ----CCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence                889999999999999999 778999999999999999999999999999999877643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.52  E-value=2.8e-13  Score=98.87  Aligned_cols=116  Identities=13%  Similarity=0.105  Sum_probs=104.4

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA  109 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~  109 (259)
                      .....+..++  .. |++++|+..+++++..+|+++.+++.+|.++...|++.              +|+..++++++++
T Consensus        14 ~~~~~~~~~~--~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------------~A~~~~~~~~~~~   76 (131)
T 2vyi_A           14 RLKTEGNEQM--KV-ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYA--------------GAVQDCERAICID   76 (131)
T ss_dssp             HHHHHHHHHH--HT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHH--Hc-cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchH--------------HHHHHHHHHHhcC
Confidence            3455566666  56 99999999999999999999999999999999999875              9999999999999


Q ss_pred             CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhc
Q psy9159         110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISK  172 (259)
Q Consensus       110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~  172 (259)
                      |+++.++..+|.++...|++.          .+...++++++++|+++.++..+|.++...++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           77 PAYSKAYGRMGLALSSLNKHV----------EAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            999999999999999999887          56789999999999999999999999887644

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.51  E-value=4.1e-13  Score=98.74  Aligned_cols=116  Identities=16%  Similarity=0.094  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhhchhhHHHHHhcHHHH
Q psy9159          66 DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS---NTQKWYGICVGANGQFQSLKEKIKCGVVF  142 (259)
Q Consensus        66 ~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~---~~~~~la~~~~~~~~~~~~~~~~~~~~~a  142 (259)
                      ++++.+|.++...|++.              +|+..++++++.+|+++   .+++++|.++...|++.          .+
T Consensus         3 ~~~~~~a~~~~~~~~~~--------------~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~----------~A   58 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYD--------------DASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQ----------LA   58 (129)
T ss_dssp             CCHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHH----------HH
T ss_pred             HHHHHHHHHHHHhCCHH--------------HHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHH----------HH
Confidence            45788999999999875              99999999999999999   79999999999999987          56


Q ss_pred             HHHHHHHHccCCCC---hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHH
Q psy9159         143 RDQMNKAIQMAPKD---FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIA  219 (259)
Q Consensus       143 ~~~~~kAl~l~P~~---~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la  219 (259)
                      ...++++++++|++   +.+++.+|.++...                    |++++|+.+|+++++..| +...+...+.
T Consensus        59 ~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~--------------------g~~~~A~~~~~~~~~~~p-~~~~~~~a~~  117 (129)
T 2xev_A           59 EAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE--------------------GKNTEAQQTLQQVATQYP-GSDAARVAQE  117 (129)
T ss_dssp             HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHST-TSHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCcccHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHCC-CChHHHHHHH
Confidence            78999999999999   88899999999875                    889999999999999999 6666655555


Q ss_pred             HHHHHhC
Q psy9159         220 KCYIEAG  226 (259)
Q Consensus       220 ~~~~~~g  226 (259)
                      .+-...+
T Consensus       118 ~l~~l~~  124 (129)
T 2xev_A          118 RLQSIRL  124 (129)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHh
Confidence            4444333

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.51  E-value=1.4e-13  Score=100.64  Aligned_cols=120  Identities=17%  Similarity=0.084  Sum_probs=105.5

Q ss_pred             CCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHH
Q psy9159          62 PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVV  141 (259)
Q Consensus        62 p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~  141 (259)
                      |+.+++++.+|.++...|++.              +|+..++++++.+|+++.++..+|.++...|++.          .
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~--------------~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~----------~   56 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFD--------------TALKHYDKAKELDPTNMTYITNQAAVYFEKGDYN----------K   56 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH----------H
T ss_pred             ChHHHHHHHHHHHHHHhcCHH--------------HHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHH----------H
Confidence            345788999999999999875              9999999999999999999999999999999887          5


Q ss_pred             HHHHHHHHHccCCCC-------hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHh
Q psy9159         142 FRDQMNKAIQMAPKD-------FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKEN  214 (259)
Q Consensus       142 a~~~~~kAl~l~P~~-------~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~  214 (259)
                      +...++++++++|++       +.+++.+|.++...                    |++++|+.+|+++++++| + ...
T Consensus        57 A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------------~~~~~A~~~~~~~~~~~~-~-~~~  114 (131)
T 1elr_A           57 CRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKE--------------------EKYKDAIHFYNKSLAEHR-T-PDV  114 (131)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCC-C-HHH
T ss_pred             HHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHhCC-C-HHH
Confidence            678999999999988       88899999988774                    889999999999999999 5 777


Q ss_pred             HHHHHHHHHHhCC
Q psy9159         215 QLLIAKCYIEAGE  227 (259)
Q Consensus       215 ~~~la~~~~~~g~  227 (259)
                      +..++.+...+++
T Consensus       115 ~~~l~~~~~~~~~  127 (131)
T 1elr_A          115 LKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888776543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.50  E-value=2.9e-14  Score=129.53  Aligned_cols=130  Identities=13%  Similarity=0.033  Sum_probs=112.0

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      ...+..++  .. |++++|++.|+++++.+|+++.++..+|.+|..+|++.              +|++.++++++++|+
T Consensus        10 ~~lg~~~~--~~-g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~--------------~A~~~~~~al~l~p~   72 (477)
T 1wao_1           10 KTQANDYF--KA-KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG--------------YALGDATRAIELDKK   72 (477)
T ss_dssp             SSSSSSTT--TT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHSCTT
T ss_pred             HHHHHHHH--Hh-CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHH--------------HHHHHHHHHHHhCCC
Confidence            34444555  56 99999999999999999999999999999999999875              999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHH--HHHhhccchHHHHHHHHHhcCCC
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY--QYEISKLSFFERKIAVLIVSDLD  189 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~--~~~~~~~~~~~~~~~~~~~~~~~  189 (259)
                      ++.++..+|.++...|++.          +|.+.++++++++|+++.++..+|.+  +...                   
T Consensus        73 ~~~~~~~lg~~~~~~g~~~----------eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-------------------  123 (477)
T 1wao_1           73 YIKGYYRRAASNMALGKFR----------AALRDYETVVKVKPHDKDAKMKYQECNKIVKQ-------------------  123 (477)
T ss_dssp             CHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHH-------------------
T ss_pred             CHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-------------------
Confidence            9999999999999999887          57789999999999999999999987  4443                   


Q ss_pred             CCcHHHHHHHHH-----------HHHhhCC
Q psy9159         190 EPTAEDAIANCL-----------KAEELAP  208 (259)
Q Consensus       190 ~g~~~eAi~~~~-----------kAi~l~P  208 (259)
                       |++++|++.++           ++++++|
T Consensus       124 -g~~~~A~~~~~~~~~~~~~~~~~al~~~~  152 (477)
T 1wao_1          124 -KAFERAIAGDEHKRSVVDSLDIESMTIED  152 (477)
T ss_dssp             -HHHCCC------CCSTTTCCTTSSCCCCT
T ss_pred             -HHHHHHhccccccchhHhhhhhhhccccc
Confidence             77999999999           8999888

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.50  E-value=8.1e-13  Score=119.68  Aligned_cols=172  Identities=15%  Similarity=0.102  Sum_probs=105.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----hhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHC----LYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYG  120 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la  120 (259)
                      +++++|+..++++++.  .++++++.+|.+|..    .++..              +|+.+++++++.  +++.+++.+|
T Consensus       237 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~--------------~A~~~~~~a~~~--~~~~a~~~Lg  298 (490)
T 2xm6_A          237 QDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPL--------------KALEWYRKSAEQ--GNSDGQYYLA  298 (490)
T ss_dssp             CCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHH--------------HHHHHHHHHHTT--TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHH--------------HHHHHHHHHHHc--CCHHHHHHHH
Confidence            6677777777776654  456666677776665    45443              555555555433  3445555555


Q ss_pred             HHHHHh-----hchhhHHHH-------------------------HhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159         121 ICVGAN-----GQFQSLKEK-------------------------IKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI  170 (259)
Q Consensus       121 ~~~~~~-----~~~~~~~~~-------------------------~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~  170 (259)
                      .++...     +++..+...                         ..+..++...++++++.  .++.+++.+|.+|.. 
T Consensus       299 ~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~-  375 (490)
T 2xm6_A          299 HLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQ-  375 (490)
T ss_dssp             HHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-
T ss_pred             HHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc-
Confidence            555443     233210000                         00111334445555444  344555555554433 


Q ss_pred             hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCCCc
Q psy9159         171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIE----AGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~kal~l~p~~~  246 (259)
                                     |....+++++|+.+|++|++..   ++.++.+||.+|..    .+++++|+++|++|++.+|..|
T Consensus       376 ---------------g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  437 (490)
T 2xm6_A          376 ---------------GKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF  437 (490)
T ss_dssp             ---------------TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred             ---------------CCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence                           1122488999999999999964   37899999999999    8999999999999999997645


Q ss_pred             cchhhhhhh
Q psy9159         247 ESHDLSTTY  255 (259)
Q Consensus       247 ~~~~~~~~~  255 (259)
                      ++.....+.
T Consensus       438 ~~~~a~~~l  446 (490)
T 2xm6_A          438 GTENRNITE  446 (490)
T ss_dssp             HHHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            455554443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.49  E-value=2.6e-13  Score=119.31  Aligned_cols=125  Identities=17%  Similarity=0.126  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH----------------hCCCChHHHHHHHHHHHHhhc
Q psy9159          65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME----------------LAPNNSNTQKWYGICVGANGQ  128 (259)
Q Consensus        65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~----------------~~P~~~~~~~~la~~~~~~~~  128 (259)
                      +..+..+|.++...|++.              +|+..|+++++                ++|.++.++.++|.++...++
T Consensus       223 a~~~~~~g~~~~~~g~~~--------------~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~  288 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWE--------------MAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD  288 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcCHH--------------HHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            455777888888888765              89999999998                888889999999999999988


Q ss_pred             hhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC
Q psy9159         129 FQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP  208 (259)
Q Consensus       129 ~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P  208 (259)
                      +.          .|+.++++||+++|+++.+|+.+|.++..+                    |++++|+.+|++|++++|
T Consensus       289 ~~----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--------------------g~~~eA~~~l~~Al~l~P  338 (370)
T 1ihg_A          289 WQ----------GAVDSCLEALEIDPSNTKALYRRAQGWQGL--------------------KEYDQALADLKKAQEIAP  338 (370)
T ss_dssp             HH----------HHHHHHHHHHTTCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCT
T ss_pred             HH----------HHHHHHHHHHHhCchhHHHHHHHHHHHHHc--------------------cCHHHHHHHHHHHHHhCC
Confidence            87          567899999999999999999999998875                    789999999999999999


Q ss_pred             CCcHHhHHHHHHHHHHhCCHHHHHHH
Q psy9159         209 APWKENQLLIAKCYIEAGEYAKAVQW  234 (259)
Q Consensus       209 ~~~~~~~~~la~~~~~~g~~~eA~~~  234 (259)
                       ++..++..++.++..+++.+++.+.
T Consensus       339 -~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          339 -EDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             7788999999999999988887643

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.49  E-value=2.8e-14  Score=104.28  Aligned_cols=88  Identities=17%  Similarity=0.038  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHcc---CCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHH
Q psy9159         141 VFRDQMNKAIQM---APKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLL  217 (259)
Q Consensus       141 ~a~~~~~kAl~l---~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~  217 (259)
                      +|+..+++++++   +|+++.+++.+|.++...                    |++++|+.+|+++++++| +++.+++.
T Consensus         8 ~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~--------------------~~~~~A~~~~~~al~~~p-~~~~~~~~   66 (117)
T 3k9i_A            8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL--------------------GEYRKAEAVLANGVKQFP-NHQALRVF   66 (117)
T ss_dssp             CCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCC-CchHHHHH
Confidence            467899999999   699999999999999885                    889999999999999999 77999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159         218 IAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       218 la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~  249 (259)
                      +|.++..+|++++|++.+++++++.|.+++-.
T Consensus        67 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           67 YAMVLYNLGRYEQGVELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            99999999999999999999999999887643

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.49  E-value=1.3e-13  Score=98.20  Aligned_cols=105  Identities=14%  Similarity=0.067  Sum_probs=97.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcH
Q psy9159          60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCG  139 (259)
Q Consensus        60 ~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~  139 (259)
                      .+|+++.+++.+|.++...|++.              +|+..++++++++|+++.++..+|.++...|++.         
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~--------------~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~---------   57 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYT--------------ESIDLFEKAIQLDPEESKYWLMKGKALYNLERYE---------   57 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHH--------------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH---------
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHH--------------HHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHH---------
Confidence            36899999999999999999875              9999999999999999999999999999999887         


Q ss_pred             HHHHHHHHHHHccCCC--ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHhhCC
Q psy9159         140 VVFRDQMNKAIQMAPK--DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDE-PTAEDAIANCLKAEELAP  208 (259)
Q Consensus       140 ~~a~~~~~kAl~l~P~--~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~eAi~~~~kAi~l~P  208 (259)
                       .+...++++++++|+  ++.++..+|.++..                    . |++++|+++++++++..|
T Consensus        58 -~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           58 -EAVDCYNYVINVIEDEYNKDVWAAKADALRY--------------------IEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             -HHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT--------------------CSSCSHHHHHHHHHHGGGCC
T ss_pred             -HHHHHHHHHHHhCcccchHHHHHHHHHHHHH--------------------HhCCHHHHHHHHHHHhhccc
Confidence             567899999999999  99999999998865                    5 678999999999999999

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.47  E-value=2.4e-13  Score=99.37  Aligned_cols=103  Identities=17%  Similarity=0.206  Sum_probs=93.2

Q ss_pred             CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159         110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD  189 (259)
Q Consensus       110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~  189 (259)
                      |+.+.++..+|.++...|++.          .+...++++++++|+++.+++.+|.++...                   
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-------------------   51 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFD----------TALKHYDKAKELDPTNMTYITNQAAVYFEK-------------------   51 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------------------
T ss_pred             ChHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHhcCCccHHHHHHHHHHHHHh-------------------
Confidence            345677888999998888887          567899999999999999999999999875                   


Q ss_pred             CCcHHHHHHHHHHHHhhCCCCc-------HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159         190 EPTAEDAIANCLKAEELAPAPW-------KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV  243 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~-------~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p  243 (259)
                       |++++|+.+|++++++.| ..       ..++..+|.++..+|++++|+++|+++++++|
T Consensus        52 -~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           52 -GDYNKCRELCEKAIEVGR-ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             -TCHHHHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             -ccHHHHHHHHHHHHhhcc-ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence             889999999999999988 55       78899999999999999999999999999988

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.46  E-value=9.9e-14  Score=120.41  Aligned_cols=132  Identities=13%  Similarity=0.012  Sum_probs=84.1

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH-----------------HHHHHHHHHHHHhhchhcccCcHHHHHHH
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP-----------------DVLYRLAKACHCLYDIKRRENDKEASEKY   94 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~-----------------~~~~~la~~~~~~g~~~~~~~~~~~~~~~   94 (259)
                      ...+..++  .. |++++|+..|++++...|+++                 .+++++|.+|..+|++.            
T Consensus       183 ~~~g~~~~--~~-g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~------------  247 (338)
T 2if4_A          183 KMDGNSLF--KE-EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD------------  247 (338)
T ss_dssp             HHHHHHTC--SS-SCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH------------
T ss_pred             HHHHHHHH--hc-CCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH------------
Confidence            45555666  56 999999999999999999987                 48999999999999886            


Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc
Q psy9159          95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS  174 (259)
Q Consensus        95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~  174 (259)
                        +|+..++++++++|+++.+++++|.++..+|++.          .|...|+++++++|+++.++..++.+....    
T Consensus       248 --~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~----------~A~~~l~~al~l~p~~~~a~~~L~~l~~~~----  311 (338)
T 2if4_A          248 --EAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMD----------SARDDFRKAQKYAPDDKAIRRELRALAEQE----  311 (338)
T ss_dssp             --HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH----------HHHHHHHHTTC-----------------------
T ss_pred             --HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----
Confidence              9999999999999999999999999999999987          567899999999999999999999875432    


Q ss_pred             hHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC
Q psy9159         175 FFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA  209 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~  209 (259)
                                     .+..+++...|.++++.+|+
T Consensus       312 ---------------~~~~~~a~~~~~~~l~~~p~  331 (338)
T 2if4_A          312 ---------------KALYQKQKEMYKGIFKGKDE  331 (338)
T ss_dssp             -----------------------------------
T ss_pred             ---------------HHHHHHHHHHHHHhhCCCCC
Confidence                           25678999999999999993

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.45  E-value=2.2e-13  Score=116.29  Aligned_cols=132  Identities=14%  Similarity=0.042  Sum_probs=103.6

Q ss_pred             HHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHH
Q psy9159          71 LAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN------SNTQKWYGICVGANGQFQSLKEKIKCGVVFRD  144 (259)
Q Consensus        71 la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~------~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~  144 (259)
                      .|.+|...|++.              +|+..+++++++.+..      ..++..+|.++...|++.          .|..
T Consensus        42 a~~~~~~~g~~~--------------~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~----------~A~~   97 (307)
T 2ifu_A           42 AAVAFKNAKQLE--------------QAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP----------EAVQ   97 (307)
T ss_dssp             HHHHHHHTTCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG----------GGHH
T ss_pred             HHHHHHHcCCHH--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH----------HHHH
Confidence            356777777764              9999999999887644      456778888888888887          4567


Q ss_pred             HHHHHHccCCCC------hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc-----HH
Q psy9159         145 QMNKAIQMAPKD------FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW-----KE  213 (259)
Q Consensus       145 ~~~kAl~l~P~~------~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~-----~~  213 (259)
                      ++++|+++.+..      ..++..+|.+|..                     |++++|+.+|++|+++.|...     ..
T Consensus        98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~---------------------g~~~~A~~~~~~Al~~~~~~~~~~~~~~  156 (307)
T 2ifu_A           98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP---------------------LDLSKAVHLYQQAAAVFENEERLRQAAE  156 (307)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT---------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence            888888875432      3566777776632                     779999999999999976221     46


Q ss_pred             hHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         214 NQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       214 ~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      ++.++|.+|..+|++++|++.|++++++.|.+..
T Consensus       157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  190 (307)
T 2ifu_A          157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN  190 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence            7899999999999999999999999998876554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.45  E-value=7.1e-12  Score=113.48  Aligned_cols=165  Identities=13%  Similarity=0.033  Sum_probs=121.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----hhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHC----LYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYG  120 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la  120 (259)
                      +++++|+..|+++.+.  .++++++.||.+|..    .++.              ++|+.+++++++.  +++.+++.+|
T Consensus        57 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~--------------~~A~~~~~~a~~~--~~~~a~~~Lg  118 (490)
T 2xm6_A           57 KDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDY--------------AQAVIWYKKAALK--GLPQAQQNLG  118 (490)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH--------------HHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH--------------HHHHHHHHHHHHC--CCHHHHHHHH
Confidence            8999999999999886  789999999999998    4444              4889999998765  5888888899


Q ss_pred             HHHHH----hhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHH----hhcc----chHHHHHH-------
Q psy9159         121 ICVGA----NGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYE----ISKL----SFFERKIA-------  181 (259)
Q Consensus       121 ~~~~~----~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~----~~~~----~~~~~~~~-------  181 (259)
                      .++..    .+++.          ++...++++++.  +++.+++.||.+|..    .++.    .|+.+++.       
T Consensus       119 ~~y~~g~g~~~~~~----------~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~  186 (490)
T 2xm6_A          119 VMYHEGNGVKVDKA----------ESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSC  186 (490)
T ss_dssp             HHHHHTSSSCCCHH----------HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCCCCCCHH----------HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            88775    33443          566777887654  578888888887765    2222    23333322       


Q ss_pred             ----HHHh-cCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHH----hCCHHHHHHHHHHHhcCC
Q psy9159         182 ----VLIV-SDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIE----AGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       182 ----~~~~-~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~kal~l~  242 (259)
                          ..+. +....+++++|+.+|+++++..   ++.+++.||.+|..    .+++++|+++|+++++..
T Consensus       187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~  253 (490)
T 2xm6_A          187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG  253 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence                1111 1122588899999999988764   36788889999887    788999999999988764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.45  E-value=9.4e-13  Score=115.19  Aligned_cols=174  Identities=10%  Similarity=-0.007  Sum_probs=127.1

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCC-------CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC---
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPN-------DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN---  111 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~---  111 (259)
                      .. |++++|+..++++++..+.       .+.++..+|.+|..+|++.              +|++++++++++.+.   
T Consensus       153 ~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~--------------~A~~~~~~al~~~~~~~~  217 (378)
T 3q15_A          153 HM-KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYD--------------KALPHLEAALELAMDIQN  217 (378)
T ss_dssp             HT-TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHTTC
T ss_pred             Hc-CCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHH--------------HHHHHHHHHHHHHHHcCC
Confidence            45 9999999999999986543       2557788899998888875              899999999987442   


Q ss_pred             ---ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc-----cCCCChhHHHHHHHHHHHhhccchHHHHHHHH
Q psy9159         112 ---NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ-----MAPKDFTLYSLKGRYQYEISKLSFFERKIAVL  183 (259)
Q Consensus       112 ---~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~-----l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~  183 (259)
                         .+.++.++|.++...|++.          .|..+++++++     .+|..+.+++.+|.++...++.+.....+..+
T Consensus       218 ~~~~~~~~~~lg~~y~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  287 (378)
T 3q15_A          218 DRFIAISLLNIANSYDRSGDDQ----------MAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEG  287 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence               2356778899998888887          56788899988     88989999999999999886643222222111


Q ss_pred             Hhc-------------------CCCCCc---HHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         184 IVS-------------------DLDEPT---AEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       184 ~~~-------------------~~~~g~---~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                      +-.                   ....++   +.+|+.++++. ...| .....+..+|.+|...|++++|+++|++++++
T Consensus       288 l~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~-~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          288 LDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHA-YIEACARSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            100                   011244   66666666652 2223 33456788999999999999999999999876


Q ss_pred             C
Q psy9159         242 P  242 (259)
Q Consensus       242 ~  242 (259)
                      .
T Consensus       366 ~  366 (378)
T 3q15_A          366 Q  366 (378)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.44  E-value=9.8e-14  Score=101.37  Aligned_cols=93  Identities=14%  Similarity=0.117  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHH
Q psy9159          93 KYILQGIEYAKKAMEL---APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYE  169 (259)
Q Consensus        93 ~~~~~A~~~~~kal~~---~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~  169 (259)
                      +.+++|+..+++++++   +|+++.++..+|.++...|++.          +|...++++++++|+++.+++.+|.++..
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~l~~~~~~   73 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYR----------KAEAVLANGVKQFPNHQALRVFYAMVLYN   73 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            3456999999999999   6999999999999999999987          57799999999999999999999999988


Q ss_pred             hhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHH
Q psy9159         170 ISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQL  216 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~  216 (259)
                      .                    |++++|+.+|+++++.+| +++....
T Consensus        74 ~--------------------g~~~~A~~~~~~al~~~p-~~~~~~~   99 (117)
T 3k9i_A           74 L--------------------GRYEQGVELLLKIIAETS-DDETIQS   99 (117)
T ss_dssp             H--------------------TCHHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred             c--------------------CCHHHHHHHHHHHHHhCC-CcHHHHH
Confidence            6                    889999999999999999 6665543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.43  E-value=5.4e-13  Score=100.70  Aligned_cols=136  Identities=15%  Similarity=0.091  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHhhchhhHHHHHhc
Q psy9159          65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS------NTQKWYGICVGANGQFQSLKEKIKC  138 (259)
Q Consensus        65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~------~~~~~la~~~~~~~~~~~~~~~~~~  138 (259)
                      ..++..+|.++...|++.              +|+.++++++++.|+..      .++..+|.++...|++.        
T Consensus         9 ~~~~~~l~~~~~~~~~~~--------------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------   66 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFR--------------DAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFE--------   66 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH--------
T ss_pred             HHHHHHHHHHHHHhcCHH--------------HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHH--------
Confidence            467788899998888865              99999999998876543      37788888888888887        


Q ss_pred             HHHHHHHHHHHHccCCCC------hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC---
Q psy9159         139 GVVFRDQMNKAIQMAPKD------FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA---  209 (259)
Q Consensus       139 ~~~a~~~~~kAl~l~P~~------~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~---  209 (259)
                        .+...+++++++.|..      ..++..+|.++...                    |++++|+.++++++++.+.   
T Consensus        67 --~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------~~~~~A~~~~~~a~~~~~~~~~  124 (164)
T 3ro3_A           67 --TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL--------------------QDYEKAIDYHLKHLAIAQELKD  124 (164)
T ss_dssp             --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHTTC
T ss_pred             --HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH--------------------hhHHHHHHHHHHHHHHHHHccc
Confidence              4567788888776553      56788888888764                    8899999999999987421   


Q ss_pred             --CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         210 --PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       210 --~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                        ....++..+|.++...|++++|++.+++++++...
T Consensus       125 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence              12456889999999999999999999999987543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.42  E-value=4.1e-12  Score=110.40  Aligned_cols=165  Identities=13%  Similarity=0.135  Sum_probs=129.5

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPD-----VLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME  107 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~  107 (259)
                      ..+..++  .. |++++|+..+++++...|.+..     ++..+|.++...|++.              +|+..++++++
T Consensus        19 ~~a~~~~--~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------------~A~~~~~~al~   81 (373)
T 1hz4_A           19 LRAQVAI--ND-GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELT--------------RSLALMQQTEQ   81 (373)
T ss_dssp             HHHHHHH--HT-TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHH
T ss_pred             HHHHHHH--HC-CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHH--------------HHHHHHHHHHH
Confidence            3344444  46 9999999999999998876533     5777888888888765              89999999998


Q ss_pred             hCCCChHH------HHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccC--------CCChhHHHHHHHHHHHhhcc
Q psy9159         108 LAPNNSNT------QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMA--------PKDFTLYSLKGRYQYEISKL  173 (259)
Q Consensus       108 ~~P~~~~~------~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~--------P~~~~~~~~lG~~~~~~~~~  173 (259)
                      +.|.....      +..+|.++...|++.          .+...+++++++.        |....++..+|.++...   
T Consensus        82 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---  148 (373)
T 1hz4_A           82 MARQHDVWHYALWSLIQQSEILFAQGFLQ----------TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW---  148 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT---
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh---
Confidence            87765433      567788888888877          4567777777764        34456778899888774   


Q ss_pred             chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCC----cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAP----WKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~----~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                                       |++++|+.++++++++.|..    ...++..+|.++...|++++|...+++++++.+.
T Consensus       149 -----------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~  206 (373)
T 1hz4_A          149 -----------------ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN  206 (373)
T ss_dssp             -----------------TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             -----------------cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence                             88999999999999998732    2356889999999999999999999999987443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.41  E-value=6.2e-13  Score=96.49  Aligned_cols=85  Identities=14%  Similarity=0.135  Sum_probs=78.9

Q ss_pred             HHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHH
Q psy9159         142 FRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC  221 (259)
Q Consensus       142 a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~  221 (259)
                      +...++++++++|+++.+++.+|.++...                    |++++|+.+|+++++++| ++..++..+|.+
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------------g~~~~A~~~~~~al~~~p-~~~~~~~~la~~   62 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEH--------------------EQFDAALPHLRAALDFDP-TYSVAWKWLGKT   62 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------------------cCHHHHHHHHHHHHHHCC-CcHHHHHHHHHH
Confidence            46789999999999999999999999875                    889999999999999999 789999999999


Q ss_pred             HHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         222 YIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       222 ~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      |..+|++++|+..|++++++.|.+.+
T Consensus        63 ~~~~g~~~~A~~~~~~al~~~~~~~~   88 (115)
T 2kat_A           63 LQGQGDRAGARQAWESGLAAAQSRGD   88 (115)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHcCCHHHHHHHHHHHHHhcccccc
Confidence            99999999999999999999876543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.41  E-value=5.6e-12  Score=113.51  Aligned_cols=98  Identities=8%  Similarity=-0.047  Sum_probs=70.9

Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-
Q psy9159          46 DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG-  124 (259)
Q Consensus        46 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~-  124 (259)
                      ++++|+..|+++.+.+|.++..++.+|.+|.......          +++++|+.+|+++.   |+++.+++.+|.++. 
T Consensus       194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~----------~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~  260 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGT----------PDEKTAQALLEKIA---PGYPASWVSLAQLLYD  260 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSS----------CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC----------CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence            8889999999999988888888888888886542111          12358888888887   888888888888732 


Q ss_pred             --HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHH
Q psy9159         125 --ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQY  168 (259)
Q Consensus       125 --~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~  168 (259)
                        ..+++.          ++...|++|++.  .++.+++.||.+|.
T Consensus       261 ~~~~~d~~----------~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          261 FPELGDVE----------QMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             SGGGCCHH----------HHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             CCCCCCHH----------HHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence              233332          566777777644  47788888887776

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.41  E-value=7.1e-12  Score=108.78  Aligned_cols=154  Identities=11%  Similarity=0.024  Sum_probs=127.1

Q ss_pred             C-CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh-h-chhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159          45 D-DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCL-Y-DIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI  121 (259)
Q Consensus        45 ~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-g-~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~  121 (259)
                      | .+++++..+.+++..+|++..+|...+.++..+ + +.              +++++.+.++++++|.|..+|...+.
T Consensus       102 ~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~--------------~~EL~~~~k~L~~dpkNy~AW~~R~w  167 (349)
T 3q7a_A          102 NKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP--------------VSEIEYIHGSLLPDPKNYHTWAYLHW  167 (349)
T ss_dssp             TCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC--------------HHHHHHHHHHTSSCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh--------------HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            5 699999999999999999999999999999988 6 44              39999999999999999999999999


Q ss_pred             HHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH
Q psy9159         122 CVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL  201 (259)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~  201 (259)
                      ++..++.+....  ........+.++++|+++|.|..+|+.+|.+....+...             .....+++++++++
T Consensus       168 vl~~l~~~~~~~--~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~-------------~~~~~~~eELe~~~  232 (349)
T 3q7a_A          168 LYSHFSTLGRIS--EAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAE-------------TSSRSLQDELIYIL  232 (349)
T ss_dssp             HHHHHHHTTCCC--HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCC-------------CCHHHHHHHHHHHH
T ss_pred             HHHHhccccccc--hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc-------------cchHHHHHHHHHHH
Confidence            999888765210  011124578889999999999999999998876542210             00013799999999


Q ss_pred             HHHhhCCCCcHHhHHHHHHHHHHhCCH
Q psy9159         202 KAEELAPAPWKENQLLIAKCYIEAGEY  228 (259)
Q Consensus       202 kAi~l~P~~~~~~~~~la~~~~~~g~~  228 (259)
                      +++.++| ++..+|.++..++...|+-
T Consensus       233 ~aI~~~P-~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          233 KSIHLIP-HNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HHHHHCT-TCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhCC-CCHHHHHHHHHHHHhcCCC
Confidence            9999999 7889999999999888864

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.38  E-value=2.5e-11  Score=105.51  Aligned_cols=156  Identities=12%  Similarity=0.016  Sum_probs=113.9

Q ss_pred             HhhcCCCCHHHHHH--HHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhh-HH
Q psy9159          57 LNNKQPNDPDVLYR--LAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQS-LK  133 (259)
Q Consensus        57 ~~~~~p~~~~~~~~--la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~-~~  133 (259)
                      +...-|.++++|-.  .|..+...++.           +.+.+|+..+++|++++|+++.+|..+++++........ ..
T Consensus       186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~-----------~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~  254 (372)
T 3ly7_A          186 LQKILPHRGALLTNFYQAHDYLLHGDD-----------KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDE  254 (372)
T ss_dssp             HHHHSCSSGGGHHHHHHHHHHHHHCSH-----------HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HhccCCCCHHHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCch
Confidence            33445677666533  34444443322           346799999999999999999999998888763322210 01


Q ss_pred             HHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHH
Q psy9159         134 EKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKE  213 (259)
Q Consensus       134 ~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~  213 (259)
                      ........+... ..++.++|.++.++..+|..+...                    |++++|+.++++|++++| + ..
T Consensus       255 ~~~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~--------------------gd~d~A~~~l~rAl~Ln~-s-~~  311 (372)
T 3ly7_A          255 KQLAALNTEIDN-IVTLPELNNLSIIYQIKAVSALVK--------------------GKTDESYQAINTGIDLEM-S-WL  311 (372)
T ss_dssp             HHHHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHCC-C-HH
T ss_pred             hhHHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhC--------------------CCHHHHHHHHHHHHhcCC-C-HH
Confidence            111111122221 245688999999999999876543                    889999999999999999 5 56


Q ss_pred             hHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         214 NQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       214 ~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      +|..+|.++...|++++|++.|++|+.++|..+
T Consensus       312 a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          312 NYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            788999999999999999999999999999764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.35  E-value=3.9e-11  Score=108.02  Aligned_cols=170  Identities=11%  Similarity=0.004  Sum_probs=118.3

Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q psy9159          46 DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGA  125 (259)
Q Consensus        46 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~  125 (259)
                      ..+++..+++.+...+|.   +++.||.+|...|..           ...++|+.+++++++.+|.++..++.+|.++..
T Consensus       160 ~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~-----------~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~  225 (452)
T 3e4b_A          160 HLDDVERICKAALNTTDI---CYVELATVYQKKQQP-----------EQQAELLKQMEAGVSRGTVTAQRVDSVARVLGD  225 (452)
T ss_dssp             GHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCc-----------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            455555566666555554   788888888886632           145699999999999999999998999999854


Q ss_pred             hhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHH---hhcc----chHHHHHH-----------HHHh-c
Q psy9159         126 NGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYE---ISKL----SFFERKIA-----------VLIV-S  186 (259)
Q Consensus       126 ~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~---~~~~----~~~~~~~~-----------~~~~-~  186 (259)
                      .....      .+..++...|+++.   |.++.+++.||.+|+.   .++.    .|+.++..           ..+. |
T Consensus       226 g~~~~------~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G  296 (452)
T 3e4b_A          226 ATLGT------PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEG  296 (452)
T ss_dssp             GGGSS------CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             CCCCC------CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Confidence            31111      12236789999997   9999999999998552   2221    24444332           1111 1


Q ss_pred             CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHH----hCCHHHHHHHHHHHhcCC
Q psy9159         187 DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIE----AGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       187 ~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~kal~l~  242 (259)
                      .....++++|+.+|++|.   | .++.++++||.+|..    .+++++|+++|+++.+..
T Consensus       297 ~g~~~d~~~A~~~~~~Aa---~-g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          297 KWVPADAKAAEAHFEKAV---G-REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             SSSCCCHHHHHHHHHTTT---T-TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred             CCCCCCHHHHHHHHHHHh---C-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence            122348888888888888   6 568888888888876    348888888888888754

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.35  E-value=4.9e-12  Score=111.15  Aligned_cols=114  Identities=12%  Similarity=0.104  Sum_probs=103.1

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhh----------------cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHH
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNN----------------KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKY   94 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~----------------~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~   94 (259)
                      ....+..++  .. |++++|+..|+++++                .+|.++.++.++|.+|..+|++.            
T Consensus       226 ~~~~g~~~~--~~-g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~------------  290 (370)
T 1ihg_A          226 LKNIGNTFF--KS-QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQ------------  290 (370)
T ss_dssp             HHHHHHHHH--HT-TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHH------------
T ss_pred             HHHHHHHHH--Hh-cCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHH------------
Confidence            345566677  56 999999999999998                88999999999999999999875            


Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhh
Q psy9159          95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEIS  171 (259)
Q Consensus        95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~  171 (259)
                        +|+.+++++++++|+++.+++.+|.++..++++.          +|...+++|++++|++..++..++.++...+
T Consensus       291 --~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~----------eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~  355 (370)
T 1ihg_A          291 --GAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD----------QALADLKKAQEIAPEDKAIQAELLKVKQKIK  355 (370)
T ss_dssp             --HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence              9999999999999999999999999999999887          5678999999999999999999999887653

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.35  E-value=3.2e-11  Score=101.87  Aligned_cols=139  Identities=9%  Similarity=-0.042  Sum_probs=107.9

Q ss_pred             CCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHH------HHHHHHHHHHhhchhhHHH
Q psy9159          61 QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNT------QKWYGICVGANGQFQSLKE  134 (259)
Q Consensus        61 ~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~------~~~la~~~~~~~~~~~~~~  134 (259)
                      +|+....+...+..+...|++.              +|++.++++++..|.....      ++.+|.++...|++.    
T Consensus        71 ~~~~~~~l~~~~~~~~~~~~y~--------------~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  132 (293)
T 2qfc_A           71 DIERKKQFKDQVIMLCKQKRYK--------------EIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYE----  132 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHH----
T ss_pred             chhHHHHHHHHHHHHHHhhhHH--------------HHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHH----
Confidence            3455566667777777777764              9999999999999886643      333445554455554    


Q ss_pred             HHhcHHHHHHHHHHHHccCCCC------hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH---h
Q psy9159         135 KIKCGVVFRDQMNKAIQMAPKD------FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE---E  205 (259)
Q Consensus       135 ~~~~~~~a~~~~~kAl~l~P~~------~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi---~  205 (259)
                            .|...+++++++.+..      ..+++.+|.+|...                    |++++|+.+|++|+   +
T Consensus       133 ------~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~--------------------~~~~~A~~~~~kal~~~~  186 (293)
T 2qfc_A          133 ------YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAEN--------------------GYLKKGIDLFEQILKQLE  186 (293)
T ss_dssp             ------HHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHHH
Confidence                  5788999999876654      45888999988874                    88999999999999   4


Q ss_pred             hCCCCc----HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         206 LAPAPW----KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       206 l~P~~~----~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      ..| +.    ..++.++|.+|..+|++++|++++++++++.+.
T Consensus       187 ~~~-~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          187 ALH-DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hcC-ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            556 32    257999999999999999999999999988643

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.34  E-value=1.5e-12  Score=92.53  Aligned_cols=75  Identities=13%  Similarity=0.052  Sum_probs=67.4

Q ss_pred             cCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHH
Q psy9159         152 MAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKA  231 (259)
Q Consensus       152 l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA  231 (259)
                      .+|+++.+|+.+|.+++..                    |++++|+.+|+++++++| +++.+|+.+|.+|..+|++++|
T Consensus         2 ~~p~~~~~~~~lg~~~~~~--------------------g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A   60 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKH--------------------DNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDA   60 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHH
T ss_pred             CCccCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHH
Confidence            5899999999999999875                    889999999999999999 7889999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcc
Q psy9159         232 VQWLDKAKAIPVVSYE  247 (259)
Q Consensus       232 ~~~~~kal~l~p~~~~  247 (259)
                      ++.|++++++.|.+.+
T Consensus        61 ~~~~~~al~l~~~~~~   76 (100)
T 3ma5_A           61 IDTYAQGIEVAREEGT   76 (100)
T ss_dssp             HHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhhhhcCCc
Confidence            9999999999876554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.32  E-value=6.4e-12  Score=111.06  Aligned_cols=174  Identities=16%  Similarity=0.128  Sum_probs=132.6

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHH-----------------HHHHHHHHHHHhhchhcccCcHHHH
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPD-----------------VLYRLAKACHCLYDIKRRENDKEAS   91 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----------------~~~~la~~~~~~g~~~~~~~~~~~~   91 (259)
                      ...++++..++  .. |+|++|++.|.++++..|+..+                 ++..+|.+|...|++.         
T Consensus         5 ~~~l~~a~~l~--~~-~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~---------   72 (434)
T 4b4t_Q            5 GSKLEEARRLV--NE-KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKD---------   72 (434)
T ss_dssp             THHHHHHHHHH--HH-TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHH---------
T ss_pred             HHHHHHHHHHH--HC-CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHH---------
Confidence            45688898898  66 9999999999999999887653                 5788999999999875         


Q ss_pred             HHHHHHHHHHHHHHHHhCCCChHHHH------HHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccC------CCChhH
Q psy9159          92 EKYILQGIEYAKKAMELAPNNSNTQK------WYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMA------PKDFTL  159 (259)
Q Consensus        92 ~~~~~~A~~~~~kal~~~P~~~~~~~------~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~------P~~~~~  159 (259)
                           +|.+++++++++.+....+..      .++.++...|++.          .+...+++++...      +.-..+
T Consensus        73 -----~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           73 -----KLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLD----------DQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             -----HHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHH----------HHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             -----HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHH----------HHHHHHHHHHHHHHHhCccHHHHHH
Confidence                 999999999988877655421      2233322233333          3455666665543      334568


Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh------CCCCcHHhHHHHHHHHHHhCCHHHHHH
Q psy9159         160 YSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL------APAPWKENQLLIAKCYIEAGEYAKAVQ  233 (259)
Q Consensus       160 ~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l------~P~~~~~~~~~la~~~~~~g~~~eA~~  233 (259)
                      +..+|.++...                    |+|++|+.++++++..      .| ....++..+|.+|..+|++++|..
T Consensus       138 ~~~la~~~~~~--------------------g~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~  196 (434)
T 4b4t_Q          138 SIKLATLHYQK--------------------KQYKDSLALINDLLREFKKLDDKP-SLVDVHLLESKVYHKLRNLAKSKA  196 (434)
T ss_dssp             HHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHHTTSSCST-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc--------------------cChHHHHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHhCcHHHHHH
Confidence            88999998875                    8899999999999886      23 335679999999999999999999


Q ss_pred             HHHHHhcCCCCCccchh
Q psy9159         234 WLDKAKAIPVVSYESHD  250 (259)
Q Consensus       234 ~~~kal~l~p~~~~~~~  250 (259)
                      .+++++.+.+..+.+..
T Consensus       197 ~~~~al~~~~~~~~~~~  213 (434)
T 4b4t_Q          197 SLTAARTAANSIYCPTQ  213 (434)
T ss_dssp             HHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHhhcCCCchH
Confidence            99999988776655443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.31  E-value=1.7e-11  Score=88.76  Aligned_cols=101  Identities=10%  Similarity=-0.010  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchH
Q psy9159          97 QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFF  176 (259)
Q Consensus        97 ~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~  176 (259)
                      +|++.++++++.+|+++.++..+|.++...|++.          .+...++++++++|+++.+|+.+|.++...      
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~------   66 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFD----------AALPHLRAALDFDPTYSVAWKWLGKTLQGQ------   66 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHH----------HHHHHHHHHHHHCCCcHHHHHHHHHHHHHc------
Confidence            6789999999999999999999999999999887          567899999999999999999999999875      


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCC-cHHhHHHHHHHHHHhCC
Q psy9159         177 ERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAP-WKENQLLIAKCYIEAGE  227 (259)
Q Consensus       177 ~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~-~~~~~~~la~~~~~~g~  227 (259)
                                    |++++|+.+|+++++++|+. .......+...+..+++
T Consensus        67 --------------g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           67 --------------GDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             --------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             --------------CCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence                          88999999999999998821 23344455555544443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.31  E-value=1.3e-12  Score=93.29  Aligned_cols=96  Identities=17%  Similarity=0.105  Sum_probs=84.0

Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCC
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEP  191 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g  191 (259)
                      ++.++..+|.++...|++.          .+...++++++++|+++.+|+.+|.++...                    |
T Consensus         3 ~~~~~~~~g~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------------g   52 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYR----------EAVHCYDQLITAQPQNPVGYSNKAMALIKL--------------------G   52 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------T
T ss_pred             hHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--------------------c
Confidence            4677888999999998887          567899999999999999999999999875                    8


Q ss_pred             cHHHHHHHHHHHHhhCCCCc------HHhHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159         192 TAEDAIANCLKAEELAPAPW------KENQLLIAKCYIEAGEYAKAVQWLDKA  238 (259)
Q Consensus       192 ~~~eAi~~~~kAi~l~P~~~------~~~~~~la~~~~~~g~~~eA~~~~~ka  238 (259)
                      ++++|+.+|+++++++| ++      ..++..+|.++..+|++++|++.+++.
T Consensus        53 ~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           53 EYTQAIQMCQQGLRYTS-TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             CHHHHHHHHHHHHTSCS-STTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             CHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence            89999999999999999 66      778899999999999888887766543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.25  E-value=3.4e-11  Score=101.68  Aligned_cols=122  Identities=9%  Similarity=-0.039  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHhCCCChHHH------HHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChh------HHHH
Q psy9159          95 ILQGIEYAKKAMELAPNNSNTQ------KWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT------LYSL  162 (259)
Q Consensus        95 ~~~A~~~~~kal~~~P~~~~~~------~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~------~~~~  162 (259)
                      +++|...++++++..|.++...      ..+|.++...+++.          .|...+++|+++.+....      ++..
T Consensus        91 y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYE----------YCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHH----------HHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHH----------HHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            4599999999999988887732      12444444444444          578899999997665443      6889


Q ss_pred             HHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh------CCCCcHHhHHHHHHHHHHhCCHHHHHHHHH
Q psy9159         163 KGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL------APAPWKENQLLIAKCYIEAGEYAKAVQWLD  236 (259)
Q Consensus       163 lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l------~P~~~~~~~~~la~~~~~~g~~~eA~~~~~  236 (259)
                      +|.+|...                    |++++|+.+|++|++.      ++.....++.++|.+|..+|++++|+++++
T Consensus       161 lg~~y~~~--------------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~  220 (293)
T 3u3w_A          161 IANIYAEN--------------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN  220 (293)
T ss_dssp             HHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHc--------------------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            99988875                    8899999999999953      211334579999999999999999999999


Q ss_pred             HHhcCCCCCc
Q psy9159         237 KAKAIPVVSY  246 (259)
Q Consensus       237 kal~l~p~~~  246 (259)
                      +++++.+...
T Consensus       221 ~al~~~~~~~  230 (293)
T 3u3w_A          221 KAIEISCRIN  230 (293)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            9999876543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.24  E-value=7.1e-11  Score=81.07  Aligned_cols=85  Identities=20%  Similarity=0.234  Sum_probs=64.4

Q ss_pred             CChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCC
Q psy9159         111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDE  190 (259)
Q Consensus       111 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (259)
                      +++.++..+|.++...+++.          .+...++++++++|+++.+++.+|.++...                    
T Consensus         7 ~~~~~~~~la~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--------------------   56 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYD----------EAIEYYQKALELDPNNAEAWYNLGNAYYKQ--------------------   56 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------
T ss_pred             ccHHHHHHHHHHHHHccCHH----------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--------------------
Confidence            35667777777777777766          456777888888888888888888877664                    


Q ss_pred             CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhC
Q psy9159         191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAG  226 (259)
Q Consensus       191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g  226 (259)
                      |++++|+.+|+++++++| ++..++..+|.++..+|
T Consensus        57 ~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           57 GDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcC
Confidence            678888888888888888 66777888888777654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.23  E-value=1.3e-10  Score=100.82  Aligned_cols=106  Identities=9%  Similarity=0.033  Sum_probs=82.2

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC------
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDP------DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA------  109 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~------  109 (259)
                      .. |++++|...+++++...|...      .++..+|.++...|++.              +|+..+++++++.      
T Consensus        65 ~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~--------------~A~~~~~~al~~~~~~~~~  129 (373)
T 1hz4_A           65 CK-GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQ--------------TAWETQEKAFQLINEQHLE  129 (373)
T ss_dssp             HH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHTTCT
T ss_pred             hc-CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHHHHHhccc
Confidence            45 999999999999998765432      33677899999888875              8999999998876      


Q ss_pred             --CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC-----hhHHHHHHHHHHHhhc
Q psy9159         110 --PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD-----FTLYSLKGRYQYEISK  172 (259)
Q Consensus       110 --P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~-----~~~~~~lG~~~~~~~~  172 (259)
                        |....++..+|.++...|++.          .+...+++++++.|..     ..++..+|.++...++
T Consensus       130 ~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~  189 (373)
T 1hz4_A          130 QLPMHEFLVRIRAQLLWAWARLD----------EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD  189 (373)
T ss_dssp             TSTHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC
T ss_pred             cCcHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC
Confidence              334566777899998888887          5678889999988763     3467788888877643

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.21  E-value=4.5e-10  Score=97.63  Aligned_cols=141  Identities=16%  Similarity=0.068  Sum_probs=106.4

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN  112 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~  112 (259)
                      .++-.++...+...+.+|+.+|+++++.+|+++.++-.++.+|........  ... ........++. ...++..+|.+
T Consensus       201 Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~--~~~-~~~~~l~~a~~-a~~a~~~~~~~  276 (372)
T 3ly7_A          201 YQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHP--LDE-KQLAALNTEID-NIVTLPELNNL  276 (372)
T ss_dssp             HHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSC--CCH-HHHHHHHHHHH-HHHTCGGGTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCC--Cch-hhHHHHHHHHH-HHHhcccCCcC
Confidence            444444421334678999999999999999999999999999985432210  111 22233344444 22466888999


Q ss_pred             hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCc
Q psy9159         113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPT  192 (259)
Q Consensus       113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~  192 (259)
                      +.++..++.++...|+++          .+...+++|++++|+ +.+|..+|.++...                    |+
T Consensus       277 a~~~~alal~~l~~gd~d----------~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~--------------------G~  325 (372)
T 3ly7_A          277 SIIYQIKAVSALVKGKTD----------ESYQAINTGIDLEMS-WLNYVLLGKVYEMK--------------------GM  325 (372)
T ss_dssp             HHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCCC-HHHHHHHHHHHHHT--------------------TC
T ss_pred             HHHHHHHHHHHHhCCCHH----------HHHHHHHHHHhcCCC-HHHHHHHHHHHHHC--------------------CC
Confidence            999999998888788887          567899999999985 78888999877653                    89


Q ss_pred             HHHHHHHHHHHHhhCC
Q psy9159         193 AEDAIANCLKAEELAP  208 (259)
Q Consensus       193 ~~eAi~~~~kAi~l~P  208 (259)
                      +++|+++|.+|+.++|
T Consensus       326 ~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          326 NREAADAYLTAFNLRP  341 (372)
T ss_dssp             HHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            9999999999999999

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.21  E-value=4.7e-10  Score=95.69  Aligned_cols=159  Identities=7%  Similarity=-0.134  Sum_probs=124.7

Q ss_pred             CCcCCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC----ChHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQP--NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN----NSNT  115 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~----~~~~  115 (259)
                      .. |++++|+..+.+.+..+|  ++.+++..++.++..+|+..              .|...+++..+.+|+    +...
T Consensus       112 ~~-g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d--------------~A~k~l~~~~~~~~d~~~~~d~~  176 (310)
T 3mv2_B          112 IL-GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVS--------------TASTIFDNYTNAIEDTVSGDNEM  176 (310)
T ss_dssp             HH-TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             Hc-CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHhcCccccccchHH
Confidence            44 999999999999999887  89999999999999999875              999999999999993    2223


Q ss_pred             HHHH--HHHHHHhh--chhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCC
Q psy9159         116 QKWY--GICVGANG--QFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEP  191 (259)
Q Consensus       116 ~~~l--a~~~~~~~--~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g  191 (259)
                      ...+  +++....|  ++.          .+...|+++.+..|+.......++ ++..+                    |
T Consensus       177 l~~Laea~v~l~~g~~~~q----------~A~~~f~El~~~~p~~~~~~lLln-~~~~~--------------------g  225 (310)
T 3mv2_B          177 ILNLAESYIKFATNKETAT----------SNFYYYEELSQTFPTWKTQLGLLN-LHLQQ--------------------R  225 (310)
T ss_dssp             HHHHHHHHHHHHHTCSTTT----------HHHHHHHHHHTTSCSHHHHHHHHH-HHHHH--------------------T
T ss_pred             HHHHHHHHHHHHhCCccHH----------HHHHHHHHHHHhCCCcccHHHHHH-HHHHc--------------------C
Confidence            3333  44444444  333          467888999988887222222222 45443                    8


Q ss_pred             cHHHHHHHHHHHHhh----------CCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159         192 TAEDAIANCLKAEEL----------APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       192 ~~~eAi~~~~kAi~l----------~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~  249 (259)
                      ++++|...++..+++          +| +++.+..++..+...+|+  +|.+++.++.+.+|+++.-+
T Consensus       226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p-~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~  290 (310)
T 3mv2_B          226 NIAEAQGIVELLLSDYYSVEQKENAVL-YKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK  290 (310)
T ss_dssp             CHHHHHHHHHHHHSHHHHTTTCHHHHS-SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred             CHHHHHHHHHHHHHhcccccccccCCC-CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence            899999999988887          58 678989899999999998  99999999999999988643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.19  E-value=1.7e-10  Score=79.18  Aligned_cols=85  Identities=25%  Similarity=0.318  Sum_probs=77.2

Q ss_pred             CCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHH
Q psy9159          62 PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVV  141 (259)
Q Consensus        62 p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~  141 (259)
                      |.++.+++.+|.++...|++.              +|+..++++++++|+++.++..+|.++...+++.          .
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~--------------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~----------~   61 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYD--------------EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD----------E   61 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------H
T ss_pred             cccHHHHHHHHHHHHHccCHH--------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHH----------H
Confidence            456889999999999999875              9999999999999999999999999999999887          5


Q ss_pred             HHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159         142 FRDQMNKAIQMAPKDFTLYSLKGRYQYEI  170 (259)
Q Consensus       142 a~~~~~kAl~l~P~~~~~~~~lG~~~~~~  170 (259)
                      +...++++++++|+++.++..+|.++...
T Consensus        62 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~   90 (91)
T 1na3_A           62 AIEYYQKALELDPNNAEAKQNLGNAKQKQ   90 (91)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            67899999999999999999999988653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.17  E-value=2e-10  Score=97.93  Aligned_cols=159  Identities=13%  Similarity=0.076  Sum_probs=123.9

Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhh
Q psy9159          50 AYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP--NNSNTQKWYGICVGANG  127 (259)
Q Consensus        50 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P--~~~~~~~~la~~~~~~~  127 (259)
                      |+..+++.+...+.++.+++.+|.++...|++.              +|+..+.++|..+|  ++.++....+.++...|
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~e--------------eAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~  150 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLD--------------KSLETCVEGIDNDEAEGTTELLLLAIEVALLNN  150 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH--------------HHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC
Confidence            788888888877777888899999999999875              99999999999997  89999999999999998


Q ss_pred             chhhHHHHHhcHHHHHHHHHHHHccCCC----ChhHHHHHHHH--HHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH
Q psy9159         128 QFQSLKEKIKCGVVFRDQMNKAIQMAPK----DFTLYSLKGRY--QYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL  201 (259)
Q Consensus       128 ~~~~~~~~~~~~~~a~~~~~kAl~l~P~----~~~~~~~lG~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~  201 (259)
                      +..          .|.+.+++..+.+|+    +-.+...++..  .+..+                  .+++.+|+..|+
T Consensus       151 r~d----------~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g------------------~~~~q~A~~~f~  202 (310)
T 3mv2_B          151 NVS----------TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATN------------------KETATSNFYYYE  202 (310)
T ss_dssp             CHH----------HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHT------------------CSTTTHHHHHHH
T ss_pred             CHH----------HHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhC------------------CccHHHHHHHHH
Confidence            876          567888888899994    23444444433  33322                  158999999999


Q ss_pred             HHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC-------Cccchhhh
Q psy9159         202 KAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV-------SYESHDLS  252 (259)
Q Consensus       202 kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~-------~~~~~~~~  252 (259)
                      ++.+..| ++.....-+. +++.+|++++|.+.+++++++.|.       ++++..++
T Consensus       203 El~~~~p-~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L  258 (310)
T 3mv2_B          203 ELSQTFP-TWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL  258 (310)
T ss_dssp             HHHTTSC-SHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred             HHHHhCC-CcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence            9998888 5333333333 999999999999999998888644       34555555

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.17  E-value=1.4e-10  Score=97.74  Aligned_cols=136  Identities=10%  Similarity=-0.053  Sum_probs=114.0

Q ss_pred             HHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC-C
Q psy9159          34 EIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN-N  112 (259)
Q Consensus        34 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~-~  112 (259)
                      -+..+.  .. |+|++|.+.|..++...|+++ +.+.+|.++...+++.              +|+..+++++...++ .
T Consensus       108 yA~~L~--~~-g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~--------------dA~~~l~~a~~~~d~~~  169 (282)
T 4f3v_A          108 FAACEA--AQ-GNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWT--------------DVIDQVKSAGKWPDKFL  169 (282)
T ss_dssp             HHHHHH--HH-TCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHH--------------HHHHHHTTGGGCSCHHH
T ss_pred             HHHHHH--HC-CCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHH--------------HHHHHHHHhhccCCccc
Confidence            444555  55 999999999999999999999 9999999999999875              999999988775322 1


Q ss_pred             -hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccC--CC-ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC
Q psy9159         113 -SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMA--PK-DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL  188 (259)
Q Consensus       113 -~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~--P~-~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~  188 (259)
                       ..+++++|.++..+|++.          +|+..|++++.-.  |. .+.+++.+|.++.++                  
T Consensus       170 ~~~a~~~LG~al~~LG~~~----------eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l------------------  221 (282)
T 4f3v_A          170 AGAAGVAHGVAAANLALFT----------EAERRLTEANDSPAGEACARAIAWYLAMARRSQ------------------  221 (282)
T ss_dssp             HHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH------------------
T ss_pred             HHHHHHHHHHHHHHCCCHH----------HHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc------------------
Confidence             458999999999999988          5678999998655  66 667999999998886                  


Q ss_pred             CCCcHHHHHHHHHHHHhhCCCCcHHhHHHHH
Q psy9159         189 DEPTAEDAIANCLKAEELAPAPWKENQLLIA  219 (259)
Q Consensus       189 ~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la  219 (259)
                        |+.++|...|+++++.+| + ..++..|.
T Consensus       222 --Gr~deA~~~l~~a~a~~P-~-~~~~~aL~  248 (282)
T 4f3v_A          222 --GNESAAVALLEWLQTTHP-E-PKVAAALK  248 (282)
T ss_dssp             --TCHHHHHHHHHHHHHHSC-C-HHHHHHHH
T ss_pred             --CCHHHHHHHHHHHHhcCC-c-HHHHHHHh
Confidence              889999999999999999 6 76665553

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.13  E-value=9.5e-11  Score=82.21  Aligned_cols=93  Identities=15%  Similarity=0.055  Sum_probs=78.1

Q ss_pred             HHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChh-HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHH
Q psy9159         117 KWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT-LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAED  195 (259)
Q Consensus       117 ~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~-~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e  195 (259)
                      +..|.++...|++.          .+...++++++++|+++. +++.+|.++...                    |++++
T Consensus         4 ~~~a~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~--------------------~~~~~   53 (99)
T 2kc7_A            4 LKTIKELINQGDIE----------NALQALEEFLQTEPVGKDEAYYLMGNAYRKL--------------------GDWQK   53 (99)
T ss_dssp             HHHHHHHHHHTCHH----------HHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH--------------------TCHHH
T ss_pred             HHHHHHHHHcCCHH----------HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc--------------------CCHHH
Confidence            35666777777776          577899999999999999 999999999875                    78999


Q ss_pred             HHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         196 AIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       196 Ai~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                      |+.+|+++++++| ++..++.+        +.+.+++..|+++...+|+++..
T Consensus        54 A~~~~~~al~~~p-~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~~~   97 (99)
T 2kc7_A           54 ALNNYQSAIELNP-DSPALQAR--------KMVMDILNFYNKDMYNQLEHHHH   97 (99)
T ss_dssp             HHHHHHHHHHHCT-TSTHHHHH--------HHHHHHHHHHCCTTHHHHCCSSC
T ss_pred             HHHHHHHHHhcCC-CcHHHHHH--------HHHHHHHHHHHHHhccCcccccC
Confidence            9999999999999 66776643        67889999999999998887653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.13  E-value=5.1e-10  Score=79.53  Aligned_cols=85  Identities=6%  Similarity=-0.029  Sum_probs=77.1

Q ss_pred             CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHH
Q psy9159          64 DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFR  143 (259)
Q Consensus        64 ~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~  143 (259)
                      ++++++.+|.++...|++.              +|+..++++++++|+++.++..+|.++...|++.          .+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~--------------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~----------~A~   58 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYR--------------EAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYT----------QAI   58 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------HHH
T ss_pred             hHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH----------HHH
Confidence            4688999999999999875              9999999999999999999999999999999987          567


Q ss_pred             HHHHHHHccCCCC------hhHHHHHHHHHHHhhc
Q psy9159         144 DQMNKAIQMAPKD------FTLYSLKGRYQYEISK  172 (259)
Q Consensus       144 ~~~~kAl~l~P~~------~~~~~~lG~~~~~~~~  172 (259)
                      ..++++++++|++      ..+++.+|.++...+.
T Consensus        59 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~   93 (111)
T 2l6j_A           59 QMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGS   93 (111)
T ss_dssp             HHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999      8889999998877643

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.11  E-value=2.5e-09  Score=80.43  Aligned_cols=115  Identities=17%  Similarity=0.106  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhc
Q psy9159          93 KYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISK  172 (259)
Q Consensus        93 ~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~  172 (259)
                      +++++|+.+++++.+..+  +.+.  +|.++.......          ++.+.+++|.+.  .++.+++.||.+|..   
T Consensus         9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~----------~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~---   69 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQ----------KLFQYLSKACEL--NSGNGCRFLGDFYEN---   69 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHH----------HHHHHHHHHHHT--TCHHHHHHHHHHHHH---
T ss_pred             cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHH----------HHHHHHHHHHcC--CCHHHHHHHHHHHHc---
Confidence            457899999999999874  4444  777765544333          377899999887  789999999998875   


Q ss_pred             cchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHH----hCCHHHHHHHHHHHhcCC
Q psy9159         173 LSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIE----AGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~kal~l~  242 (259)
                                   |....+++++|+.+|++|.+..   ++.++++||.+|..    .+++++|+++|++|.+..
T Consensus        70 -------------G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           70 -------------GKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             -------------CSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             -------------CCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence                         1112478999999999999973   48899999999999    899999999999999985

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.11  E-value=2.4e-10  Score=85.91  Aligned_cols=129  Identities=14%  Similarity=-0.030  Sum_probs=99.7

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHH
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP------DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM  106 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal  106 (259)
                      ..+..++  .. |++++|+..++++++..|...      .++..+|.++...|++.              +|+.++++++
T Consensus        14 ~l~~~~~--~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------------~A~~~~~~a~   76 (164)
T 3ro3_A           14 NLGNTHY--LL-GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFE--------------TASEYYKKTL   76 (164)
T ss_dssp             HHHHHHH--HT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHH
T ss_pred             HHHHHHH--Hh-cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHH
Confidence            3444455  56 999999999999998765432      47888999999888875              8999999998


Q ss_pred             HhCCCC------hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC------ChhHHHHHHHHHHHhhccc
Q psy9159         107 ELAPNN------SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK------DFTLYSLKGRYQYEISKLS  174 (259)
Q Consensus       107 ~~~P~~------~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~------~~~~~~~lG~~~~~~~~~~  174 (259)
                      ++.|..      ..++..+|.++...|++.          .+...+++++++.+.      .+.++..+|.++...    
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~----  142 (164)
T 3ro3_A           77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYE----------KAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL----  142 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHhhHH----------HHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc----
Confidence            887654      567788888888888887          456677777766332      245678888887765    


Q ss_pred             hHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC
Q psy9159         175 FFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP  208 (259)
Q Consensus       175 ~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P  208 (259)
                                      |++++|+.++++++++..
T Consensus       143 ----------------g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          143 ----------------GNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             ----------------TCHHHHHHHHHHHHHHHT
T ss_pred             ----------------cCHHHHHHHHHHHHHHHH
Confidence                            889999999999999865

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.09  E-value=1.7e-10  Score=80.93  Aligned_cols=93  Identities=19%  Similarity=0.244  Sum_probs=77.4

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHH-HHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPD-VLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA  109 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~  109 (259)
                      .+..+..++  .. |++++|+..++++++.+|+++. +++.+|.+|..+|++.              +|+..++++++++
T Consensus         3 ~~~~a~~~~--~~-~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~--------------~A~~~~~~al~~~   65 (99)
T 2kc7_A            3 QLKTIKELI--NQ-GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQ--------------KALNNYQSAIELN   65 (99)
T ss_dssp             THHHHHHHH--HH-TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHHC
T ss_pred             HHHHHHHHH--Hc-CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHhcC
Confidence            356677777  56 9999999999999999999999 9999999999999875              9999999999999


Q ss_pred             CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChh
Q psy9159         110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT  158 (259)
Q Consensus       110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~  158 (259)
                      |+++.++.+        +.+.          ++...+++++.++|+++.
T Consensus        66 p~~~~~~~~--------~~~~----------~a~~~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           66 PDSPALQAR--------KMVM----------DILNFYNKDMYNQLEHHH   96 (99)
T ss_dssp             TTSTHHHHH--------HHHH----------HHHHHHCCTTHHHHCCSS
T ss_pred             CCcHHHHHH--------HHHH----------HHHHHHHHHhccCccccc
Confidence            999998744        1111          345677888888887753

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.08  E-value=9.9e-10  Score=77.72  Aligned_cols=86  Identities=17%  Similarity=0.143  Sum_probs=70.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcH
Q psy9159          60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCG  139 (259)
Q Consensus        60 ~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~  139 (259)
                      .+|+++.+++.+|.+|...|++.              +|+..++++++++|+++.+|..+|.++...|++.         
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~--------------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~---------   58 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNAS--------------RALALFEELVETDPDYVGTYYHLGKLYERLDRTD---------   58 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH---------
T ss_pred             CCccCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH---------
Confidence            47999999999999999999875              9999999999999999999999999999999987         


Q ss_pred             HHHHHHHHHHHccCCCChhH--HHHHHHHHHH
Q psy9159         140 VVFRDQMNKAIQMAPKDFTL--YSLKGRYQYE  169 (259)
Q Consensus       140 ~~a~~~~~kAl~l~P~~~~~--~~~lG~~~~~  169 (259)
                       .|...+++++++.|++...  ...++.++..
T Consensus        59 -~A~~~~~~al~l~~~~~~~~~~~~l~~~l~~   89 (100)
T 3ma5_A           59 -DAIDTYAQGIEVAREEGTQKDLSELQDAKLK   89 (100)
T ss_dssp             -HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhhhhcCCchhHHHHHHHHHHH
Confidence             5678999999998865443  3444444433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.07  E-value=4e-10  Score=88.75  Aligned_cols=129  Identities=12%  Similarity=0.019  Sum_probs=100.2

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhh------cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHH
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNN------KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM  106 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~------~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal  106 (259)
                      ..+..+.  .. |++++|+..+++++.      ..|..+.++..+|.++...|++.              +|+.++++++
T Consensus        31 ~l~~~~~--~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------------~A~~~~~~al   93 (203)
T 3gw4_A           31 MLGYVYA--FM-DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD--------------AARRCFLEER   93 (203)
T ss_dssp             HHHHHHH--HT-TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHH
T ss_pred             HHHHHHH--Hh-CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHH
Confidence            3344444  56 999999999999998      66777889999999999999875              8999999999


Q ss_pred             Hh---CCCC----hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC------hhHHHHHHHHHHHhhcc
Q psy9159         107 EL---APNN----SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD------FTLYSLKGRYQYEISKL  173 (259)
Q Consensus       107 ~~---~P~~----~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~------~~~~~~lG~~~~~~~~~  173 (259)
                      ++   .|++    ..++..+|.++...|++.          .+...+++++++.+..      ..++..+|.++...   
T Consensus        94 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---  160 (203)
T 3gw4_A           94 ELLASLPEDPLAASANAYEVATVALHFGDLA----------GARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE---  160 (203)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---
T ss_pred             HHHHHcCccHHHHHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC---
Confidence            88   4433    456788899998888887          4567777777654322      23457788887764   


Q ss_pred             chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC
Q psy9159         174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP  208 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P  208 (259)
                                       |++++|+.++++++++..
T Consensus       161 -----------------g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          161 -----------------KNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             -----------------TCHHHHHHHHHHHHHHHH
T ss_pred             -----------------cCHHHHHHHHHHHHHHHH
Confidence                             889999999999999864

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.06  E-value=8.1e-10  Score=92.63  Aligned_cols=119  Identities=9%  Similarity=0.013  Sum_probs=96.4

Q ss_pred             hhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHh-----hchh
Q psy9159          58 NNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN--NSNTQKWYGICVGAN-----GQFQ  130 (259)
Q Consensus        58 ~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~--~~~~~~~la~~~~~~-----~~~~  130 (259)
                      -+.+|+++++++..|.+....-....   ..-..+....+|+..+++|+++||+  +..+|..+|.++...     |+.+
T Consensus       145 ~~~~~~dve~L~W~ai~~ss~a~~~~---gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~e  221 (301)
T 3u64_A          145 SRCTRVDVGTLYWVGTGYVAAFALTP---LGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGME  221 (301)
T ss_dssp             TTCCGGGHHHHHHHHHHHHHHHTTSC---TTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHH
T ss_pred             HHcCccccHHHHHHHHHHHHHHhcCC---CChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHH
Confidence            44679999999999999876322110   0013466778999999999999999  677999999999885     4544


Q ss_pred             hHHHHHhcHHHHHHHHHHHHccCCCC-hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC
Q psy9159         131 SLKEKIKCGVVFRDQMNKAIQMAPKD-FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP  208 (259)
Q Consensus       131 ~~~~~~~~~~~a~~~~~kAl~l~P~~-~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P  208 (259)
                                ++.++|++||+++|+. ..+++.+|.++...                   .|++++|..++++|++.+|
T Consensus       222 ----------kA~~~ferAL~LnP~~~id~~v~YA~~l~~~-------------------~gd~~~a~~~L~kAL~a~p  271 (301)
T 3u64_A          222 ----------KAHTAFEHLTRYCSAHDPDHHITYADALCIP-------------------LNNRAGFDEALDRALAIDP  271 (301)
T ss_dssp             ----------HHHHHHHHHHHHCCTTCSHHHHHHHHHTTTT-------------------TTCHHHHHHHHHHHHHCCG
T ss_pred             ----------HHHHHHHHHHHhCCCCCchHHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHcCCC
Confidence                      6789999999999985 99999999987652                   3889999999999999998

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.06  E-value=1.4e-09  Score=76.39  Aligned_cols=82  Identities=13%  Similarity=0.022  Sum_probs=71.1

Q ss_pred             CCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHH
Q psy9159         153 APKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAV  232 (259)
Q Consensus       153 ~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~  232 (259)
                      +|+++.++..+|.+++..++                 ....++|..++++|++++| +++.+.+.+|..++..|++++|+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~-----------------~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai   63 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHK-----------------QAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAI   63 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTT-----------------TCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcC-----------------CCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHH
Confidence            79999999999998876432                 1337999999999999999 88999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccchhhh
Q psy9159         233 QWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       233 ~~~~kal~l~p~~~~~~~~~  252 (259)
                      ..++++++.+|.+++-..+.
T Consensus        64 ~~w~~~l~~~p~~~~~~~i~   83 (93)
T 3bee_A           64 DTWVLLLDSNDPNLDRVTII   83 (93)
T ss_dssp             HHHHHHHTCCCTTCCHHHHH
T ss_pred             HHHHHHHhhCCCCccHHHHH
Confidence            99999999999955544443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.06  E-value=5.2e-09  Score=103.71  Aligned_cols=138  Identities=20%  Similarity=0.112  Sum_probs=97.9

Q ss_pred             CCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHH
Q psy9159          62 PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVV  141 (259)
Q Consensus        62 p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~  141 (259)
                      .+++.+|+.+|+++...|++.              +|++.|.+|     +++..+...+.++...|++++          
T Consensus      1102 vn~p~vWsqLAKAql~~G~~k--------------EAIdsYiKA-----dD~say~eVa~~~~~lGkyEE---------- 1152 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGMVK--------------EAIDSYIKA-----DDPSSYMEVVQAANTSGNWEE---------- 1152 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCCHH--------------HHHHHHHhc-----CChHHHHHHHHHHHHcCCHHH----------
Confidence            477899999999999988875              888888776     788888888888888888873          


Q ss_pred             HHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHH-----------HHHHHhcCCCCCcHHHHHHHHHHHHhhCCCC
Q psy9159         142 FRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERK-----------IAVLIVSDLDEPTAEDAIANCLKAEELAPAP  210 (259)
Q Consensus       142 a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~-----------~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~  210 (259)
                      +.++|..|++.+|+. .+...+|..|.+.++++.++..           ++..++.   .|+|++|+.+|.+|       
T Consensus      1153 AIeyL~mArk~~~e~-~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~---eg~YeeA~~~Y~kA------- 1221 (1630)
T 1xi4_A         1153 LVKYLQMARKKARES-YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYD---EKMYDAAKLLYNNV------- 1221 (1630)
T ss_pred             HHHHHHHHHhhcccc-cccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHh---cCCHHHHHHHHHhh-------
Confidence            456666666666432 2222355555554433222211           1222222   58999999999997       


Q ss_pred             cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         211 WKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       211 ~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                        ..|..+|.+|.++|++++|++.+++|...
T Consensus      1222 --~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A         1222 --SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred             --hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence              25788999999999999999999999443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.01  E-value=6.4e-09  Score=78.17  Aligned_cols=124  Identities=18%  Similarity=0.134  Sum_probs=97.5

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      +++++|+..|+++.+....  ++.  +|.+|...+...              +|+.+++++.+.  +++.+++++|.++.
T Consensus         9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~--------------~A~~~~~~Aa~~--g~~~a~~~Lg~~y~   68 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQ--------------KLFQYLSKACEL--NSGNGCRFLGDFYE   68 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHH--------------HHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHH--------------HHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence            6899999999999987644  444  888887765543              699999999987  78999999999987


Q ss_pred             H----hhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHH
Q psy9159         125 A----NGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANC  200 (259)
Q Consensus       125 ~----~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~  200 (259)
                      .    ..++.          ++...+++|.+.  .++.+++.||.+|..                |....+++++|+.+|
T Consensus        69 ~G~g~~~d~~----------~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~----------------G~g~~~d~~~A~~~~  120 (138)
T 1klx_A           69 NGKYVKKDLR----------KAAQYYSKACGL--NDQDGCLILGYKQYA----------------GKGVVKNEKQAVKTF  120 (138)
T ss_dssp             HCSSSCCCHH----------HHHHHHHHHHHT--TCHHHHHHHHHHHHH----------------TSSSCCCHHHHHHHH
T ss_pred             cCCCCCccHH----------HHHHHHHHHHcC--CCHHHHHHHHHHHHC----------------CCCCCcCHHHHHHHH
Confidence            6    33433          678999999877  789999999998875                111247899999999


Q ss_pred             HHHHhhCCCCcHHhHHHHH
Q psy9159         201 LKAEELAPAPWKENQLLIA  219 (259)
Q Consensus       201 ~kAi~l~P~~~~~~~~~la  219 (259)
                      ++|.+...   ..+..+|+
T Consensus       121 ~~Aa~~g~---~~A~~~l~  136 (138)
T 1klx_A          121 EKACRLGS---EDACGILN  136 (138)
T ss_dssp             HHHHHTTC---HHHHHHC-
T ss_pred             HHHHHCCC---HHHHHHHh
Confidence            99999854   55665554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.97  E-value=3.4e-08  Score=93.04  Aligned_cols=173  Identities=12%  Similarity=-0.026  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHH-HHHHHHHHhCCCChHHHHHHHHHHHH
Q psy9159          47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGI-EYAKKAMELAPNNSNTQKWYGICVGA  125 (259)
Q Consensus        47 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~-~~~~kal~~~P~~~~~~~~la~~~~~  125 (259)
                      .+.....|++++...|.++++|+..+..+...|+..              +|+ ..+++|+...|.+...|..++.+...
T Consensus       325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~--------------~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~  390 (679)
T 4e6h_A          325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDS--------------TVITKYLKLGQQCIPNSAVLAFSLSEQYEL  390 (679)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCT--------------THHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHH--------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            455678899999999999999999999998888764              786 99999999999998888888888888


Q ss_pred             hhchhhHHHHHhcHHHHHHHHHHHHcc-----------CCC-----------ChhHHHHHHHHHHHhhccchHHHHHHHH
Q psy9159         126 NGQFQSLKEKIKCGVVFRDQMNKAIQM-----------APK-----------DFTLYSLKGRYQYEISKLSFFERKIAVL  183 (259)
Q Consensus       126 ~~~~~~~~~~~~~~~~a~~~~~kAl~l-----------~P~-----------~~~~~~~lG~~~~~~~~~~~~~~~~~~~  183 (259)
                      .|+++          .+...|++++..           .|+           ...+|....++..+.+.+......+..+
T Consensus       391 ~~~~e----------~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A  460 (679)
T 4e6h_A          391 NTKIP----------EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC  460 (679)
T ss_dssp             TTCHH----------HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hCCHH----------HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88766          345666666653           253           3456777777665555433221111111


Q ss_pred             Hhc----------------CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         184 IVS----------------DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       184 ~~~----------------~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                      .-.                ....++++.|...|+++++..| +....|...+......|+.+.|..+|++|+...|.
T Consensus       461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD  536 (679)
T ss_dssp             HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred             HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence            100                0112558999999999999999 77888888999999999999999999999998874

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.89  E-value=8.5e-08  Score=95.22  Aligned_cols=176  Identities=12%  Similarity=0.090  Sum_probs=116.5

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      .+-|..+.  .. |++++|++.|.++     ++++.+...|.++...|++.              +|+++++.|.+.+|+
T Consensus      1109 sqLAKAql--~~-G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyE--------------EAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1109 SQLAKAQL--QK-GMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWE--------------ELVKYLQMARKKARE 1166 (1630)
T ss_pred             HHHHHHHH--hC-CCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHhhccc
Confidence            44455555  55 9999999999886     88999999999999999875              999999999998855


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHH------HHh
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAV------LIV  185 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~------~~~  185 (259)
                       +.+...+|.++.++++...              ++..+  ++.+...+..+|..+++.+++..+......      +..
T Consensus      1167 -~~Idt~LafaYAKl~rlee--------------le~fI--~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~ 1229 (1630)
T 1xi4_A         1167 -SYVETELIFALAKTNRLAE--------------LEEFI--NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLAS 1229 (1630)
T ss_pred             -ccccHHHHHHHHhhcCHHH--------------HHHHH--hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHH
Confidence             3334468888888766542              12222  233345555677776666654322111110      000


Q ss_pred             cCCCCCcHHHHHHHHHHHHhhCCC------------------------CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         186 SDLDEPTAEDAIANCLKAEELAPA------------------------PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       186 ~~~~~g~~~eAi~~~~kAi~l~P~------------------------~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                      .....|++++|++++.+|.+..+=                        .++..+..++..|...|.+++|+..+++++.+
T Consensus      1230 tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A         1230 TLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred             HHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence            011247788888888877443320                        01223446777889999999999999999999


Q ss_pred             CCCCc
Q psy9159         242 PVVSY  246 (259)
Q Consensus       242 ~p~~~  246 (259)
                      +|.+.
T Consensus      1310 eraH~ 1314 (1630)
T 1xi4_A         1310 ERAHM 1314 (1630)
T ss_pred             ChhHh
Confidence            86654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.83  E-value=2.1e-08  Score=70.31  Aligned_cols=74  Identities=9%  Similarity=-0.039  Sum_probs=63.5

Q ss_pred             CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC
Q psy9159         109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL  188 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~  188 (259)
                      +|++++.+..+|.++...++..-       ...+...+++||++||+++.+++.+|..+++.                  
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~-------~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~------------------   56 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAM-------TDEVSLLLEQALQLEPYNEAALSLIANDHFIS------------------   56 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCC-------CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------------
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHc------------------
Confidence            69999999999999876554210       11577899999999999999999999999885                  


Q ss_pred             CCCcHHHHHHHHHHHHhhCCC
Q psy9159         189 DEPTAEDAIANCLKAEELAPA  209 (259)
Q Consensus       189 ~~g~~~eAi~~~~kAi~l~P~  209 (259)
                        |+|++|+.+|+++++.+|.
T Consensus        57 --g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A           57 --FRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             --TCHHHHHHHHHHHHTCCCT
T ss_pred             --CCHHHHHHHHHHHHhhCCC
Confidence              8899999999999999993

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.83  E-value=6.4e-10  Score=99.02  Aligned_cols=144  Identities=19%  Similarity=0.160  Sum_probs=23.0

Q ss_pred             cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc------c---------CcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR------E---------NDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~------~---------~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      .|+.++|++.+++.     +++++|..+|.++...|++.+.      .         .......+.+++|+.+++.+.+.
T Consensus        16 ~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~   90 (449)
T 1b89_A           16 IGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK   90 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            37788888888887     3456888888888888876521      0         00112344455666666666554


Q ss_pred             CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC
Q psy9159         109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL  188 (259)
Q Consensus       109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~  188 (259)
                      .|+ +.+...++.++.++|++..+          .+.+     -.|+ ..+|..+|..|+..                  
T Consensus        91 ~~~-~~i~~~Li~~Y~Klg~l~e~----------e~f~-----~~pn-~~a~~~IGd~~~~~------------------  135 (449)
T 1b89_A           91 ARE-SYVETELIFALAKTNRLAEL----------EEFI-----NGPN-NAHIQQVGDRCYDE------------------  135 (449)
T ss_dssp             -------------------CHHHH----------TTTT-----TCC----------------------------------
T ss_pred             Ccc-chhHHHHHHHHHHhCCHHHH----------HHHH-----cCCc-HHHHHHHHHHHHHc------------------
Confidence            333 44444555555555554321          1111     1243 34777777777665                  


Q ss_pred             CCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159         189 DEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA  238 (259)
Q Consensus       189 ~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~ka  238 (259)
                        |+|++|+.+|.++    +     .|..||.|+..+|++++|++.++++
T Consensus       136 --g~yeeA~~~Y~~a----~-----n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          136 --KMYDAAKLLYNNV----S-----NFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             ---CTTTHHHHHHHT----T-----CHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             --CCHHHHHHHHHHh----h-----hHHHHHHHHHHhccHHHHHHHHHHc
Confidence              4555555555544    1     2444555555555555555555555

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.79  E-value=1.5e-07  Score=88.76  Aligned_cols=179  Identities=7%  Similarity=-0.057  Sum_probs=122.5

Q ss_pred             CCHHHHH-HHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh-----------CCC-
Q psy9159          45 DDKAKAY-NLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL-----------APN-  111 (259)
Q Consensus        45 ~~~~~A~-~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~-----------~P~-  111 (259)
                      |+.++|. +.|++++...|.++.+|+..+......|+..              +|.+.|++++..           .|. 
T Consensus       357 ~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e--------------~aR~iyek~l~~l~~~~~~~~~~~p~~  422 (679)
T 4e6h_A          357 NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIP--------------EIETTILSCIDRIHLDLAALMEDDPTN  422 (679)
T ss_dssp             SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH--------------HHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence            7778997 9999999999999999999999888888754              566666666653           243 


Q ss_pred             ----------ChHHHHHHHHHHHHhhchhhHHHH-------------------------H-hcHHHHHHHHHHHHccCCC
Q psy9159         112 ----------NSNTQKWYGICVGANGQFQSLKEK-------------------------I-KCGVVFRDQMNKAIQMAPK  155 (259)
Q Consensus       112 ----------~~~~~~~la~~~~~~~~~~~~~~~-------------------------~-~~~~~a~~~~~kAl~l~P~  155 (259)
                                .+.+|..++.+..+.++...+..-                         . .+...+...|+++|+..|+
T Consensus       423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~  502 (679)
T 4e6h_A          423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT  502 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence                      233444444444444433211000                         0 0012445566666666666


Q ss_pred             ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC--CcHHhHHHHHHHHHHhCCHHHHHH
Q psy9159         156 DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA--PWKENQLLIAKCYIEAGEYAKAVQ  233 (259)
Q Consensus       156 ~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~--~~~~~~~~la~~~~~~g~~~eA~~  233 (259)
                      ++..|...+.+....                    |+.+.|...|++|+...|+  .....|......-...|+.+.+.+
T Consensus       503 ~~~~w~~y~~fe~~~--------------------~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~  562 (679)
T 4e6h_A          503 DGEYINKYLDFLIYV--------------------NEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT  562 (679)
T ss_dssp             CHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             chHHHHHHHHHHHhC--------------------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            666665555543332                    7899999999999999872  234567778888888999999999


Q ss_pred             HHHHHhcCCCCCccchhhhhhhcc
Q psy9159         234 WLDKAKAIPVVSYESHDLSTTYSY  257 (259)
Q Consensus       234 ~~~kal~l~p~~~~~~~~~~~~~~  257 (259)
                      .++++.+..|+++.-+.....|++
T Consensus       563 v~~R~~~~~P~~~~~~~f~~ry~~  586 (679)
T 4e6h_A          563 LEKRFFEKFPEVNKLEEFTNKYKV  586 (679)
T ss_dssp             HHHHHHHHSTTCCHHHHHHHHTCB
T ss_pred             HHHHHHHhCCCCcHHHHHHHHhcC
Confidence            999999999998766655555544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.77  E-value=7.3e-08  Score=87.55  Aligned_cols=131  Identities=13%  Similarity=0.088  Sum_probs=97.7

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhc-----CCCCH---HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHH
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNK-----QPNDP---DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKK  104 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~k  104 (259)
                      +.+..+.  .+ |+|++|+.+++++++.     .|++|   .++.+||.+|..+|++.              +|+.++++
T Consensus       314 e~a~~~~--~q-g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~--------------eA~~~~~~  376 (490)
T 3n71_A          314 EKIDKAR--SE-GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYE--------------EASHYARR  376 (490)
T ss_dssp             HHHHHHH--TT-TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHH
T ss_pred             HHHHHHH--hC-CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHH--------------HHHHHHHH
Confidence            3444454  56 9999999999999873     45555   45677888888888765              88888877


Q ss_pred             HHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh---hHHHHHHHHHHHhhccchHHHHHH
Q psy9159         105 AMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF---TLYSLKGRYQYEISKLSFFERKIA  181 (259)
Q Consensus       105 al~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~---~~~~~lG~~~~~~~~~~~~~~~~~  181 (259)
                      +|++..                                     +  .+.|+|+   ..+++||.+|...           
T Consensus       377 aL~i~~-------------------------------------~--~lG~~Hp~~a~~l~nLa~~~~~~-----------  406 (490)
T 3n71_A          377 MVDGYM-------------------------------------K--LYHHNNAQLGMAVMRAGLTNWHA-----------  406 (490)
T ss_dssp             HHHHHH-------------------------------------H--HSCTTCHHHHHHHHHHHHHHHHT-----------
T ss_pred             HHHHHH-------------------------------------H--HcCCCCHHHHHHHHHHHHHHHHC-----------
Confidence            765421                                     1  1334444   5578888888774           


Q ss_pred             HHHhcCCCCCcHHHHHHHHHHHHhh-----CCCCcH---HhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         182 VLIVSDLDEPTAEDAIANCLKAEEL-----APAPWK---ENQLLIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       182 ~~~~~~~~~g~~~eAi~~~~kAi~l-----~P~~~~---~~~~~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                               |++++|+..|++|+++     .| +.+   .....|+.++..++++++|...|+++.+
T Consensus       407 ---------G~~~eA~~~~~~Al~i~~~~lG~-~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          407 ---------GHIEVGHGMICKAYAILLVTHGP-SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             ---------TCHHHHHHHHHHHHHHHHHHTCT-TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------CCHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     8899999999999985     46 333   4467899999999999999999999865

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.76  E-value=1.9e-08  Score=89.52  Aligned_cols=160  Identities=13%  Similarity=0.048  Sum_probs=114.2

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA  109 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~  109 (259)
                      ....-++.++  .. |.|++|...|.++        +.|.++|.++..+|++.              +|++.++++    
T Consensus       124 a~~~IGd~~~--~~-g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq--------------~AVea~~KA----  174 (449)
T 1b89_A          124 HIQQVGDRCY--DE-KMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQ--------------AAVDGARKA----  174 (449)
T ss_dssp             ----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHH--------------HHHHHHHHH----
T ss_pred             HHHHHHHHHH--Hc-CCHHHHHHHHHHh--------hhHHHHHHHHHHhccHH--------------HHHHHHHHc----
Confidence            3445566666  55 7888888888766        35677888888887765              899999998    


Q ss_pred             CCChHHHHHHHHHHHHhhchhhHH--------------------HHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHH
Q psy9159         110 PNNSNTQKWYGICVGANGQFQSLK--------------------EKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYE  169 (259)
Q Consensus       110 P~~~~~~~~la~~~~~~~~~~~~~--------------------~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~  169 (259)
                       +++.+|.....++...|++..+.                    .+.+...++...+++++.++|.+...++.+|..|.+
T Consensus       175 -~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          175 -NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             -CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence             47788877777777777554332                    223344577899999999999999999999988765


Q ss_pred             hhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC-----CCcHHhHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159         170 ISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP-----APWKENQLLIAKCYIEAGEYAKAVQWLDKA  238 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P-----~~~~~~~~~la~~~~~~g~~~eA~~~~~ka  238 (259)
                      -.                  .++..++++.|...+.+.|     .+ ...|..+..+|...++++.|+..+-..
T Consensus       254 y~------------------p~k~~ehl~~~~~~ini~k~~~~~~~-~~~w~e~~~ly~~~~e~d~A~~tm~~h  308 (449)
T 1b89_A          254 FK------------------PQKMREHLELFWSRVNIPKVLRAAEQ-AHLWAELVFLYDKYEEYDNAIITMMNH  308 (449)
T ss_dssp             TC------------------HHHHHHHHHHHSTTSCHHHHHHHHHT-TTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cC------------------HHHHHHHHHHHHHHhcCcHHHHHHHH-HHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence            32                  2678999999998888766     32 456999999999999999999876654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.71  E-value=2.8e-08  Score=75.63  Aligned_cols=95  Identities=8%  Similarity=0.017  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC-CCCcHHhHHHHH
Q psy9159         141 VFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA-PAPWKENQLLIA  219 (259)
Q Consensus       141 ~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~-P~~~~~~~~~la  219 (259)
                      .+.+.|.+.++.+|.+..+.+.+|.++.....                 .++++++|..++..++.+ |.+..+.+++||
T Consensus        16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~-----------------~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LA   78 (152)
T 1pc2_A           16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKY-----------------NDDIRKGIVLLEELLPKGSKEEQRDYVFYLA   78 (152)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSS-----------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCC-----------------HHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence            45678888899999999999999988876432                 146789999999999999 734578899999


Q ss_pred             HHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         220 KCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       220 ~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                      ..+.++|++++|+++++++++++|+|.....+.
T Consensus        79 v~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           79 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            999999999999999999999999987765554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.69  E-value=2.4e-07  Score=70.42  Aligned_cols=96  Identities=9%  Similarity=-0.003  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccC-C-CChhHHHHHHHHHHHh
Q psy9159          93 KYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMA-P-KDFTLYSLKGRYQYEI  170 (259)
Q Consensus        93 ~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~-P-~~~~~~~~lG~~~~~~  170 (259)
                      +.+..+...|.+.++.+|.+.++.+.+|+++.+..+....       .+++..++..++.+ | ++.+++|.||..++++
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~-------~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl   84 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDI-------RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL   84 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHH-------HHHHHHHHHHHhcCCccchHHHHHHHHHHHHHc
Confidence            3456788889999999999999999999999986643322       25678899999998 8 6789999999999885


Q ss_pred             hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHH
Q psy9159         171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQL  216 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~  216 (259)
                                          |+|++|.++++++++++| ++..+..
T Consensus        85 --------------------~~Y~~A~~y~~~lL~ieP-~n~QA~~  109 (152)
T 1pc2_A           85 --------------------KEYEKALKYVRGLLQTEP-QNNQAKE  109 (152)
T ss_dssp             --------------------SCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred             --------------------cCHHHHHHHHHHHHhcCC-CCHHHHH
Confidence                                889999999999999999 7776644

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.68  E-value=8.1e-08  Score=68.48  Aligned_cols=72  Identities=10%  Similarity=-0.092  Sum_probs=61.4

Q ss_pred             ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC------CCcHHhHHHHHHHHHHhCCHH
Q psy9159         156 DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP------APWKENQLLIAKCYIEAGEYA  229 (259)
Q Consensus       156 ~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P------~~~~~~~~~la~~~~~~g~~~  229 (259)
                      ++.-.+.+|..++..                    |+|..|+.+|++|++..+      .....++..||.++.++|+++
T Consensus         4 sa~dc~~lG~~~~~~--------------------~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~   63 (104)
T 2v5f_A            4 TAEDCFELGKVAYTE--------------------ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLD   63 (104)
T ss_dssp             CHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHc--------------------cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHH
Confidence            455678899988875                    889999999999999741      134678999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcc
Q psy9159         230 KAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       230 eA~~~~~kal~l~p~~~~  247 (259)
                      +|+..++++++++|++..
T Consensus        64 ~A~~~~~~al~l~P~~~~   81 (104)
T 2v5f_A           64 KALLLTKKLLELDPEHQR   81 (104)
T ss_dssp             HHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHhcCCCCHH
Confidence            999999999999988753

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.60  E-value=1.1e-07  Score=83.75  Aligned_cols=162  Identities=11%  Similarity=0.013  Sum_probs=109.8

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC------CCChHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA------PNNSNT  115 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~------P~~~~~  115 (259)
                      .. |++++|++.+.+++...+...... ..+.+...+|......++       +++|+..+++++...      +..+.+
T Consensus        67 ~~-~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           67 TM-GAKDKLREFIPHSTEYMMQFAKSK-TVKVLKTLIEKFEQVPDS-------LDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HH-TCHHHHHHHHHHTHHHHHTSCHHH-HHHHHHHHHHHHCSCCSC-------HHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HC-CCHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            45 999999999999988655443321 112222223322211111       236677777766553      333567


Q ss_pred             HHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHcc------CCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159         116 QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM------APKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD  189 (259)
Q Consensus       116 ~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l------~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~  189 (259)
                      +..+|.++...|++..+          ...+++++..      .|....++..+|++|...                   
T Consensus       138 ~~~la~~~~~~g~~~~A----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  188 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDS----------LALINDLLREFKKLDDKPSLVDVHLLESKVYHKL-------------------  188 (434)
T ss_dssp             HHHHHHHHHHHTCHHHH----------HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHT-------------------
T ss_pred             HHHHHHHHHHccChHHH----------HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh-------------------
Confidence            78899999999988744          4455555433      344557889999998875                   


Q ss_pred             CCcHHHHHHHHHHHHhhCCC--Cc----HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         190 EPTAEDAIANCLKAEELAPA--PW----KENQLLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~--~~----~~~~~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                       |++++|..++++++.+.|.  +.    ...+..+|..+...|++++|..+|.++++..
T Consensus       189 -~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~  246 (434)
T 4b4t_Q          189 -RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY  246 (434)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred             -CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence             8899999999999987421  11    2457788999999999999999999998754

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.42  E-value=3e-05  Score=70.39  Aligned_cols=155  Identities=7%  Similarity=0.022  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q psy9159          47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGAN  126 (259)
Q Consensus        47 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~  126 (259)
                      .+.+...|++++...|.++.+|+..+..+...|+..              +|...+++|+.. |.+...|..++.... .
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~--------------~ar~i~erAi~~-P~~~~l~~~y~~~~e-~  258 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKE--------------KAKKVVERGIEM-SDGMFLSLYYGLVMD-E  258 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHH-CCSSHHHHHHHHHTT-C
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHhC-CCcHHHHHHHHhhcc-h
Confidence            456778999999999999999999999888777654              999999999999 999877766554310 0


Q ss_pred             hch-hh------------------------------HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccch
Q psy9159         127 GQF-QS------------------------------LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF  175 (259)
Q Consensus       127 ~~~-~~------------------------------~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~  175 (259)
                      .+. ..                              ...+......+...+++| +..+.....|...+.+.+..+    
T Consensus       259 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~----  333 (493)
T 2uy1_A          259 EAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYAT----  333 (493)
T ss_dssp             THHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHH----
T ss_pred             hHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHC----
Confidence            000 00                              000122234566778888 433334444544444333321    


Q ss_pred             HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159         176 FERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA  238 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~ka  238 (259)
                                     ++.+.|...|+++++..| +.+..+...+......|+.+.|...|+++
T Consensus       334 ---------------~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          334 ---------------GSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             ---------------CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             ---------------CChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                           357778888888888777 55666666666677777777777777776

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.37  E-value=1.5e-06  Score=77.65  Aligned_cols=95  Identities=11%  Similarity=-0.050  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHc-----cCCCChh---HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh-----
Q psy9159         140 VVFRDQMNKAIQ-----MAPKDFT---LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL-----  206 (259)
Q Consensus       140 ~~a~~~~~kAl~-----l~P~~~~---~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l-----  206 (259)
                      .+|...++++|+     +.|+|+.   .+.+||.+|..+                    |+|++|+.++++++++     
T Consensus       315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~--------------------g~~~eA~~~~~~aL~i~~~~l  374 (433)
T 3qww_A          315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM--------------------QDWEGALKYGQKIIKPYSKHY  374 (433)
T ss_dssp             HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh--------------------cCHHHHHHHHHHHHHHHHHHc
Confidence            467788888886     5788875   467788888764                    8999999999999986     


Q ss_pred             CCC--CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc-----CCCCCccchhhhhh
Q psy9159         207 APA--PWKENQLLIAKCYIEAGEYAKAVQWLDKAKA-----IPVVSYESHDLSTT  254 (259)
Q Consensus       207 ~P~--~~~~~~~~la~~~~~~g~~~eA~~~~~kal~-----l~p~~~~~~~~~~~  254 (259)
                      .|+  +....+.+||.+|..+|++++|+..|++|++     +.|++|...++..|
T Consensus       375 G~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~  429 (433)
T 3qww_A          375 PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQE  429 (433)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            341  2234589999999999999999999999987     57888777766654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.36  E-value=3.5e-06  Score=59.81  Aligned_cols=77  Identities=10%  Similarity=0.086  Sum_probs=66.8

Q ss_pred             CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHhhchhhHHHHH
Q psy9159          64 DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA-------PNNSNTQKWYGICVGANGQFQSLKEKI  136 (259)
Q Consensus        64 ~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~-------P~~~~~~~~la~~~~~~~~~~~~~~~~  136 (259)
                      +++-.+.+|..++..|++.              .|+.++++|++..       +..+.++..+|.++..+|++.      
T Consensus         4 sa~dc~~lG~~~~~~~~y~--------------~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~------   63 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYY--------------HTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLD------   63 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHH------
T ss_pred             CHHHHHHHHHHHHHccchH--------------HHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHH------
Confidence            4566788999999999876              9999999999864       456788999999999999887      


Q ss_pred             hcHHHHHHHHHHHHccCCCChhHHHHHH
Q psy9159         137 KCGVVFRDQMNKAIQMAPKDFTLYSLKG  164 (259)
Q Consensus       137 ~~~~~a~~~~~kAl~l~P~~~~~~~~lG  164 (259)
                          .|...++++++++|++..+..+++
T Consensus        64 ----~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           64 ----KALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             ----HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcCCCCHHHHhhHH
Confidence                567899999999999999988887

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.30  E-value=4.3e-06  Score=75.84  Aligned_cols=95  Identities=13%  Similarity=0.014  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHc-----cCCCChh---HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh-----
Q psy9159         140 VVFRDQMNKAIQ-----MAPKDFT---LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL-----  206 (259)
Q Consensus       140 ~~a~~~~~kAl~-----l~P~~~~---~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l-----  206 (259)
                      .+|...++++|+     +.|+|+.   .+.+||.+|...                    |+|++|+.++++++++     
T Consensus       326 ~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~--------------------g~~~eA~~~~~~aL~i~~~~l  385 (490)
T 3n71_A          326 HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL--------------------QAYEEASHYARRMVDGYMKLY  385 (490)
T ss_dssp             HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh--------------------cCHHHHHHHHHHHHHHHHHHc
Confidence            356777788776     5677764   577888888764                    8899999999999986     


Q ss_pred             CCC--CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc-----CCCCCccchhhhhh
Q psy9159         207 APA--PWKENQLLIAKCYIEAGEYAKAVQWLDKAKA-----IPVVSYESHDLSTT  254 (259)
Q Consensus       207 ~P~--~~~~~~~~la~~~~~~g~~~eA~~~~~kal~-----l~p~~~~~~~~~~~  254 (259)
                      .|+  +....+.+||.+|..+|++++|+..|++|++     +.|+.|....++.+
T Consensus       386 G~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~  440 (490)
T 3n71_A          386 HHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAM  440 (490)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            342  2234589999999999999999999999987     57887776665543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.19  E-value=0.00015  Score=65.76  Aligned_cols=192  Identities=13%  Similarity=0.012  Sum_probs=119.6

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL  108 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~  108 (259)
                      ..++..+-..+  .. |+++.+..+|++++...| ++++|.....-....+...             +.....|++|+..
T Consensus        15 R~vyer~l~~~--P~-~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~-------------~~i~~~fe~al~~   77 (493)
T 2uy1_A           15 SAIMEHARRLY--MS-KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKK-------------FKLYEVYEFTLGQ   77 (493)
T ss_dssp             HHHHHHHHHHH--HT-TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC-----------------CTHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--CC-CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchH-------------HHHHHHHHHHHHH
Confidence            34567777788  67 999999999999999989 8898866655554443211             2445667777764


Q ss_pred             ---CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhH-HHHHHHHHHHhhc----------cc
Q psy9159         109 ---APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTL-YSLKGRYQYEISK----------LS  174 (259)
Q Consensus       109 ---~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~-~~~lG~~~~~~~~----------~~  174 (259)
                         +|.+...|..+...+.....   ..   +....+...|++||..-+.+..- |.....+-...+.          .+
T Consensus        78 vg~d~~s~~iW~~Yi~f~~~~~~---~~---~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~  151 (493)
T 2uy1_A           78 FENYWDSYGLYKEYIEEEGKIED---EQ---TRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLP  151 (493)
T ss_dssp             STTCTTCHHHHHHHHHHTSSCSS---HH---HHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             cCCCcccHHHHHHHHHHHHhchh---hh---HHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhH
Confidence               78888877666554322110   01   12224678999999963333322 2111111100000          00


Q ss_pred             hHH---------------------HHHHHHHhcCCCCCc-----HHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCH
Q psy9159         175 FFE---------------------RKIAVLIVSDLDEPT-----AEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEY  228 (259)
Q Consensus       175 ~~~---------------------~~~~~~~~~~~~~g~-----~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~  228 (259)
                      .+.                     ........+ .+.|.     .+.....|++++...| +.+..|+..+..+...|+.
T Consensus       152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~-~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~  229 (493)
T 2uy1_A          152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME-NGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQK  229 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT-CTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc-CCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCH
Confidence            000                     000001111 11111     4557789999999999 7899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCc
Q psy9159         229 AKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       229 ~eA~~~~~kal~l~p~~~  246 (259)
                      ++|...|++|+.. |.+.
T Consensus       230 ~~ar~i~erAi~~-P~~~  246 (493)
T 2uy1_A          230 EKAKKVVERGIEM-SDGM  246 (493)
T ss_dssp             HHHHHHHHHHHHH-CCSS
T ss_pred             HHHHHHHHHHHhC-CCcH
Confidence            9999999999999 7754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.17  E-value=4.8e-06  Score=74.35  Aligned_cols=95  Identities=12%  Similarity=0.010  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHc-----cCCCChh---HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh-----
Q psy9159         140 VVFRDQMNKAIQ-----MAPKDFT---LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL-----  206 (259)
Q Consensus       140 ~~a~~~~~kAl~-----l~P~~~~---~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l-----  206 (259)
                      .++...++++++     +.|+|+.   .+.++|.+|...                    |+|++|+.++++++++     
T Consensus       304 ~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~--------------------g~~~eA~~~~~~~L~i~~~~l  363 (429)
T 3qwp_A          304 EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL--------------------GLLEEALFYGTRTMEPYRIFF  363 (429)
T ss_dssp             HHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh--------------------ccHHHHHHHHHHHHHhHHHHc
Confidence            467788899986     4677764   567777777664                    8899999999999986     


Q ss_pred             CCCCcH---HhHHHHHHHHHHhCCHHHHHHHHHHHhc-----CCCCCccchhhhhhh
Q psy9159         207 APAPWK---ENQLLIAKCYIEAGEYAKAVQWLDKAKA-----IPVVSYESHDLSTTY  255 (259)
Q Consensus       207 ~P~~~~---~~~~~la~~~~~~g~~~eA~~~~~kal~-----l~p~~~~~~~~~~~~  255 (259)
                      .| +.+   ..+++||.+|..+|++++|+..+++|++     +.|++|....+.++.
T Consensus       364 g~-~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l  419 (429)
T 3qwp_A          364 PG-SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLL  419 (429)
T ss_dssp             CS-SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred             CC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            34 333   4589999999999999999999999987     578888777766553

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.04  E-value=0.00012  Score=53.73  Aligned_cols=98  Identities=10%  Similarity=-0.003  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccC-C-CChhHHHHHHHHHH
Q psy9159          91 SEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMA-P-KDFTLYSLKGRYQY  168 (259)
Q Consensus        91 ~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~-P-~~~~~~~~lG~~~~  168 (259)
                      ....+......|.+.+..++.+..+.+.+|+++.+..+....       ...+..++..+.-+ | ..-..+|.||..++
T Consensus        13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~-------~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y   85 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDI-------RKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   85 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHH-------HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHH-------HHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            344566888889999999999999999999999876554432       24567888888877 6 56688999999888


Q ss_pred             HhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHH
Q psy9159         169 EISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQL  216 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~  216 (259)
                      ++                    |+|++|.++++..++++| +|.++..
T Consensus        86 kl--------------------g~Y~~A~~~~~~lL~~eP-~n~QA~~  112 (126)
T 1nzn_A           86 RL--------------------KEYEKALKYVRGLLQTEP-QNNQAKE  112 (126)
T ss_dssp             HT--------------------TCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred             Hh--------------------hhHHHHHHHHHHHHHhCC-CCHHHHH
Confidence            86                    889999999999999999 7777643

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.98  E-value=2.5e-05  Score=69.73  Aligned_cols=94  Identities=11%  Similarity=0.086  Sum_probs=70.3

Q ss_pred             cCCHHHHHHHHHHHhh-----cCCCCHH---HHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh-----CC
Q psy9159          44 KDDKAKAYNLTMELNN-----KQPNDPD---VLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL-----AP  110 (259)
Q Consensus        44 ~~~~~~A~~~~~~~~~-----~~p~~~~---~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~-----~P  110 (259)
                      .|+|++|+.+++++++     ..|++|.   ++.+||.+|..+|++.              +|+.+++++|++     .|
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~--------------eA~~~~~~aL~i~~~~lG~  376 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWE--------------GALKYGQKIIKPYSKHYPV  376 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHHSCS
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHH--------------HHHHHHHHHHHHHHHHcCC
Confidence            3899999999999987     4566665   4678899999999876              777777777754     45


Q ss_pred             CChHH---HHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc-----cCCCChhHHH
Q psy9159         111 NNSNT---QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ-----MAPKDFTLYS  161 (259)
Q Consensus       111 ~~~~~---~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~-----l~P~~~~~~~  161 (259)
                      +++..   +.++|.++...|++..          |...+++|++     +-|+|+.+--
T Consensus       377 ~Hp~~a~~l~nLa~~~~~qg~~~e----------A~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          377 YSLNVASMWLKLGRLYMGLENKAA----------GEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHH----------HHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhccCHHH----------HHHHHHHHHHHHHHHcCCCChHHHH
Confidence            55554   6788999999998874          4556666654     5788876543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.90  E-value=8.3e-05  Score=54.49  Aligned_cols=102  Identities=9%  Similarity=-0.010  Sum_probs=83.1

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC-C-CChHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA-P-NNSNTQKWYGIC  122 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~-P-~~~~~~~~la~~  122 (259)
                      .....+...|.+....++.++++-|++|+++....+..           ...+|+..++..+..+ | ..-++++.+|..
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~-----------d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg   83 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYND-----------DIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   83 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHH-----------HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHH-----------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            44556667777777778899999999999998765432           3458999999999887 5 677889999999


Q ss_pred             HHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q psy9159         123 VGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQ  167 (259)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~  167 (259)
                      +.++|+|.          +|..+.+..|+++|+|..+......+-
T Consensus        84 ~yklg~Y~----------~A~~~~~~lL~~eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A           84 NYRLKEYE----------KALKYVRGLLQTEPQNNQAKELERLID  118 (126)
T ss_dssp             HHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhhhHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999998          567889999999999998887776544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.83  E-value=0.00017  Score=54.30  Aligned_cols=121  Identities=17%  Similarity=0.100  Sum_probs=83.9

Q ss_pred             HhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh-hHHHHHHHHHHHhhccchHHHHHHHHHh
Q psy9159         107 ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF-TLYSLKGRYQYEISKLSFFERKIAVLIV  185 (259)
Q Consensus       107 ~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~-~~~~~lG~~~~~~~~~~~~~~~~~~~~~  185 (259)
                      -+.|+|++.|..+...+...|+...- ..+.   +..+.|++|+..-|-.. ..|-....+...-..  +  .    .  
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d-~~l~---rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~--~--~----e--   72 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSD-ALLN---KLIGRYSQAIEALPPDKYGQNESFARIQVRFAE--L--K----A--   72 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCH-HHHH---HHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH--H--H----H--
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchh-hHHH---HHHHHHHHHHHcCCccccccHHHHHHHHHHHHH--H--H----H--
Confidence            46899999999999888888876321 1111   44688999998666532 222222221111000  0  0    0  


Q ss_pred             cCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         186 SDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       186 ~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                          .++.++|.+.|+.++++.. ..+.+|...|..-..+|+.+.|.+.+.+|+.+.|...
T Consensus        73 ----i~D~d~aR~vy~~a~~~hK-kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           73 ----IQEPDDARDYFQMARANCK-KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             ----HHCGGGCHHHHHHHHHHCT-TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             ----hcCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence                1678999999999999977 5688999999999999999999999999999997644

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.75  E-value=0.0001  Score=65.70  Aligned_cols=106  Identities=14%  Similarity=0.115  Sum_probs=76.5

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhc-----CCCCH---HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHH
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNK-----QPNDP---DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY  101 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~  101 (259)
                      +.+...+.+.  .. |++++|+++++++++.     .|+++   .++.++|.+|..+|++.              +|+.+
T Consensus       289 ~ll~~ie~~~--~~-g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~--------------eA~~~  351 (429)
T 3qwp_A          289 ESLKKIEELK--AH-WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLE--------------EALFY  351 (429)
T ss_dssp             HHHHHHHHHH--HT-TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHH--------------HHHHH
T ss_pred             HHHHHHHHHH--hh-ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHH--------------HHHHH
Confidence            3455566666  56 9999999999999874     45665   56777899999999875              77777


Q ss_pred             HHHHHHh-----CCCChHH---HHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc-----cCCCChhHHHH
Q psy9159         102 AKKAMEL-----APNNSNT---QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ-----MAPKDFTLYSL  162 (259)
Q Consensus       102 ~~kal~~-----~P~~~~~---~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~-----l~P~~~~~~~~  162 (259)
                      +++++++     .|++|..   +.++|.++...|++..          |...+++|++     +-|+|+.+-..
T Consensus       352 ~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~e----------A~~~~~~Al~i~~~~lG~~Hp~~~~~  415 (429)
T 3qwp_A          352 GTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQ----------AMKNLRLAFDIMRVTHGREHSLIEDL  415 (429)
T ss_dssp             HHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHH----------HHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred             HHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHH----------HHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            7777744     3666654   6778999999998874          4455555544     68888866544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.58  E-value=0.0025  Score=47.97  Aligned_cols=135  Identities=13%  Similarity=-0.010  Sum_probs=89.8

Q ss_pred             hcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHhhchhhHHHHHh
Q psy9159          59 NKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSN-TQKWYGICVGANGQFQSLKEKIK  137 (259)
Q Consensus        59 ~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~-~~~~la~~~~~~~~~~~~~~~~~  137 (259)
                      -..|+|++.|+......-..|+..       .. ..+++-++.|++|++.-|-... -|..|..+..+...+.+    +.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~-------~d-~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~e----i~   74 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPL-------SD-ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKA----IQ   74 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSC-------CH-HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHH----HH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCc-------hh-hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHH----hc
Confidence            357999999998888887777653       11 4556788999999988876432 23334444444433321    23


Q ss_pred             cHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHH
Q psy9159         138 CGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLL  217 (259)
Q Consensus       138 ~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~  217 (259)
                      +..++.+.|+.++++....+.+|...+.+-.+                    +|+...|.+.+.+|+.+.| ... -.+.
T Consensus        75 D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiR--------------------qgnl~kARkILg~AiG~~~-k~~-~~le  132 (161)
T 4h7y_A           75 EPDDARDYFQMARANCKKFAFVHISFAQFELS--------------------QGNVKKSKQLLQKAVERGA-VPL-EMLE  132 (161)
T ss_dssp             CGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHTTC-BCH-HHHH
T ss_pred             CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------------------cccHHHHHHHHHHHhccCC-CcH-HHHH
Confidence            34466789999998877777777777765544                    3889999999999999999 433 3455


Q ss_pred             HHHHHHHhCC
Q psy9159         218 IAKCYIEAGE  227 (259)
Q Consensus       218 la~~~~~~g~  227 (259)
                      .|..-.+.|+
T Consensus       133 ~a~~nl~~~~  142 (161)
T 4h7y_A          133 IALRNLNLQK  142 (161)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHhhhcCC
Confidence            5544444444

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.54  E-value=0.0069  Score=54.90  Aligned_cols=164  Identities=15%  Similarity=0.039  Sum_probs=112.8

Q ss_pred             HHHHhhcCCcCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC--CC
Q psy9159          35 IDRLLYYGKKDDKAKAYNLTMELNNKQ-PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA--PN  111 (259)
Q Consensus        35 ~~~l~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~--P~  111 (259)
                      .+.+-  .. |+.++|+.+|+++.+.. +-+...|..+-.+|...+...+.     ...+.+++|.+.+++.....  | 
T Consensus        33 id~c~--k~-G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-----~~~~~l~~A~~lf~~M~~~G~~P-  103 (501)
T 4g26_A           33 LDMCS--KK-GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-----SPNPGLSRGFDIFKQMIVDKVVP-  103 (501)
T ss_dssp             HHHTT--TS-CCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-----SCCHHHHHHHHHHHHHHHTTCCC-
T ss_pred             HHHHH--hC-CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-----hhcchHHHHHHHHHHHHHhCCCC-
Confidence            34444  45 99999999999997753 23455666666666554432210     11234568888888877654  5 


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc--cCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ--MAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD  189 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~--l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~  189 (259)
                      |...+..+-..+...|+...          |.+.+++..+  +.|+.. .|..+-..|.+.                   
T Consensus       104 d~~tyn~lI~~~~~~g~~~~----------A~~l~~~M~~~g~~Pd~~-tyn~lI~~~~~~-------------------  153 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEM----------AFDMVKQMKAFGIQPRLR-SYGPALFGFCRK-------------------  153 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHH----------HHHHHHHHHHTTCCCCHH-HHHHHHHHHHHT-------------------
T ss_pred             CHHHHHHHHHHHHhcCCHHH----------HHHHHHHHHHcCCCCccc-eehHHHHHHHHC-------------------
Confidence            55666777777788887763          4455555443  566654 444444445443                   


Q ss_pred             CCcHHHHHHHHHHHHhh--CCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         190 EPTAEDAIANCLKAEEL--APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l--~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                       |+.++|.+.|++..+.  .|  +...|..|-.++.+.|+.++|.+.+++-.+
T Consensus       154 -g~~~~A~~l~~~M~~~G~~P--d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          154 -GDADKAYEVDAHMVESEVVP--EEPELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             -TCHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence             8899999999998875  46  467899999999999999999999998755

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.45  E-value=0.00093  Score=49.77  Aligned_cols=93  Identities=11%  Similarity=-0.009  Sum_probs=71.8

Q ss_pred             HHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHH
Q psy9159         142 FRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC  221 (259)
Q Consensus       142 a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~  221 (259)
                      +.+-|.+-+. ++-.+.+-+.++.++.....                 ..+..++|..++..+..+|...-+..+.||..
T Consensus        25 lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~-----------------~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg   86 (144)
T 1y8m_A           25 LRQQVVSEGG-PTATIQSRFNYAWGLIKSTD-----------------VNDERLGVKILTDIYKEAESRRRECLYYLTIG   86 (144)
T ss_dssp             HHHHHHHTTS-TTSCHHHHHHHHHHHHHSSS-----------------HHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHH
T ss_pred             HHHHHHHhcc-CCCcHHHHHHHHHHHHcCCC-----------------HHHHHHHHHHHHHHHhcCccchhHHHHHHHHH
Confidence            3344444322 45677888899877766533                 25578999999999999995555778999999


Q ss_pred             HHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         222 YIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       222 ~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                      +.++|+|++|.++.+..++++|+|.....+.
T Consensus        87 ~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           87 CYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             HHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            9999999999999999999999987655443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.40  E-value=0.00088  Score=49.28  Aligned_cols=80  Identities=10%  Similarity=-0.029  Sum_probs=65.2

Q ss_pred             ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHH
Q psy9159         156 DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWL  235 (259)
Q Consensus       156 ~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~  235 (259)
                      .+.+-+.++..+.....                 ..+..++|..++..+..+|...-+.++.||..+.++|+|++|.++.
T Consensus        39 s~qt~F~yAw~Lv~S~~-----------------~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~  101 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTD-----------------VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV  101 (134)
T ss_dssp             CHHHHHHHHHHHHHSSC-----------------HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCC-----------------HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            55778888877666533                 2467899999999999998444577999999999999999999999


Q ss_pred             HHHhcCCCCCccchhhh
Q psy9159         236 DKAKAIPVVSYESHDLS  252 (259)
Q Consensus       236 ~kal~l~p~~~~~~~~~  252 (259)
                      +.++++.|+|.....+.
T Consensus       102 d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A          102 DTLFEHERNNKQVGALK  118 (134)
T ss_dssp             HHHHTTCTTCHHHHHHH
T ss_pred             HHHHhhCCCCHHHHHHH
Confidence            99999999987655443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.29  E-value=0.004  Score=45.76  Aligned_cols=101  Identities=8%  Similarity=0.022  Sum_probs=76.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP-NNSNTQKWYGICV  123 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P-~~~~~~~~la~~~  123 (259)
                      .+.....+.|.+-. ...-++++-|++|+++....+..           ...+|+..++..+..+| ..-++++.+|..+
T Consensus        21 eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~-----------d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~   88 (134)
T 3o48_A           21 QQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVN-----------DERLGVKILTDIYKEAESRRRECLYYLTIGC   88 (134)
T ss_dssp             HHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHH-----------HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHH-----------HHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence            44445555555543 33446789999999988765432           35689999999999998 4578889999999


Q ss_pred             HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q psy9159         124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQ  167 (259)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~  167 (259)
                      .++|++.          .|.++.+..|+++|+|..+......+-
T Consensus        89 yklgdY~----------~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie  122 (134)
T 3o48_A           89 YKLGEYS----------MAKRYVDTLFEHERNNKQVGALKSMVE  122 (134)
T ss_dssp             HHHTCHH----------HHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHhhhHH----------HHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            9999988          567888999999999998887776654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.23  E-value=0.0069  Score=45.06  Aligned_cols=101  Identities=8%  Similarity=0.027  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP-NNSNTQKWYGICV  123 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P-~~~~~~~~la~~~  123 (259)
                      .+.+...+.|.+-.. ++-++++-|++|+++....+..           ...+|+..++..+..+| ..-++++.+|..+
T Consensus        20 eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~-----------di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~   87 (144)
T 1y8m_A           20 QQLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVN-----------DERLGVKILTDIYKEAESRRRECLYYLTIGC   87 (144)
T ss_dssp             HHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHH-----------HHHHHHHHHHHHHHHCCSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHH-----------HHHHHHHHHHHHHhcCccchhHHHHHHHHHH
Confidence            444455555554422 3678899999999998766532           35699999999999998 5677889999999


Q ss_pred             HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q psy9159         124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQ  167 (259)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~  167 (259)
                      .++++|.          +|.++.+..|+++|+|..+......+-
T Consensus        88 ykl~~Y~----------~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie  121 (144)
T 1y8m_A           88 YKLGEYS----------MAKRYVDTLFEHERNNKQVGALKSMVE  121 (144)
T ss_dssp             HTTTCHH----------HHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             HHhhhHH----------HHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            9999998          567888999999999998887776554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.21  E-value=0.0032  Score=59.68  Aligned_cols=48  Identities=27%  Similarity=0.247  Sum_probs=45.0

Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA  238 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~ka  238 (259)
                      .|+|+-|+.+.++|+.+.| .....|..|+.||+.+|+++.|+-.++-+
T Consensus       350 K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          350 RGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             TTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4899999999999999999 77899999999999999999999888776

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.71  E-value=0.0067  Score=46.37  Aligned_cols=110  Identities=11%  Similarity=0.077  Sum_probs=74.4

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHH---------HHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHH
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPD---------VLYRLAKACHCLYDIKRRENDKEASEKYILQGIE  100 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~  100 (259)
                      .++.++..++  .. |.|+.|+-+...++....++++         +++.+|.+++..+++.              +|..
T Consensus        22 ~l~dqik~L~--d~-~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyr--------------rA~~   84 (167)
T 3ffl_A           22 NVIDHVRDMA--AA-GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYR--------------NAVS   84 (167)
T ss_dssp             CHHHHHHHHH--HT-TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHH--------------HHHH
T ss_pred             HHHHHHHHHH--Hh-hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHH--------------HHHH
Confidence            4578888888  77 9999999998887665544444         7788999999988876              6666


Q ss_pred             HHHHHHHhC-------------------------CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC
Q psy9159         101 YAKKAMELA-------------------------PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK  155 (259)
Q Consensus       101 ~~~kal~~~-------------------------P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~  155 (259)
                      .|++||.+.                         +.+.+..+.++.|+..++++..+          +..++. |-..--
T Consensus        85 ~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A----------i~~Le~-Ip~k~R  153 (167)
T 3ffl_A           85 KYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA----------IAILDG-IPSRQR  153 (167)
T ss_dssp             HHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH----------HHHHHT-SCGGGC
T ss_pred             HHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH----------HHHHhc-CCchhc
Confidence            666654322                         11226778899999888887633          333322 222223


Q ss_pred             ChhHHHHHHHHH
Q psy9159         156 DFTLYSLKGRYQ  167 (259)
Q Consensus       156 ~~~~~~~lG~~~  167 (259)
                      .+.+...||+.|
T Consensus       154 t~kvnm~LakLy  165 (167)
T 3ffl_A          154 TPKINMLLANLY  165 (167)
T ss_dssp             CHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHh
Confidence            567777787765

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.46  E-value=0.016  Score=44.24  Aligned_cols=60  Identities=17%  Similarity=0.168  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC---CCC---------------------cHHh
Q psy9159         159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA---PAP---------------------WKEN  214 (259)
Q Consensus       159 ~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~---P~~---------------------~~~~  214 (259)
                      +++.+|..++..                    +.|..|...|++|+++.   |+.                     ..+.
T Consensus        65 ~l~~ladalf~~--------------------~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~El  124 (167)
T 3ffl_A           65 LLVYHADSLFHD--------------------KEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEV  124 (167)
T ss_dssp             HHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHH
T ss_pred             HHHHHHHHHHcc--------------------cHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHH
Confidence            667778777763                    78999999999987642   101                     0257


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159         215 QLLIAKCYIEAGEYAKAVQWLDKA  238 (259)
Q Consensus       215 ~~~la~~~~~~g~~~eA~~~~~ka  238 (259)
                      .+.+|.||.++|++++|+..++..
T Consensus       125 kykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          125 KYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHCCHHHHHHHHhcC
Confidence            788999999999999999998753

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.81  E-value=0.33  Score=43.79  Aligned_cols=141  Identities=11%  Similarity=0.019  Sum_probs=88.7

Q ss_pred             CCHHH-HHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhhchhhHHHHHhcH
Q psy9159          63 NDPDV-LYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA--PNNSNTQKWYGICVGANGQFQSLKEKIKCG  139 (259)
Q Consensus        63 ~~~~~-~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~--P~~~~~~~~la~~~~~~~~~~~~~~~~~~~  139 (259)
                      ..|+. +..+-..|.+.|+..              +|++.+++..+..  |+ ...|..+-.++...+...... .....
T Consensus        23 ~spe~~l~~~id~c~k~G~~~--------------~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~-~~~~l   86 (501)
T 4g26_A           23 QSPEALLKQKLDMCSKKGDVL--------------EALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESS-PNPGL   86 (501)
T ss_dssp             -CHHHHHHHHHHHTTTSCCHH--------------HHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSS-CCHHH
T ss_pred             CCCHHHHHHHHHHHHhCCCHH--------------HHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhh-hcchH
Confidence            34554 334445666667654              8999998887754  53 444444433444333221100 00111


Q ss_pred             HHHHHHHHHHHc--cCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh--CCCCcHHhH
Q psy9159         140 VVFRDQMNKAIQ--MAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL--APAPWKENQ  215 (259)
Q Consensus       140 ~~a~~~~~kAl~--l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l--~P~~~~~~~  215 (259)
                      ..+.+.+++..+  +.|+. .+|..+-..|.+.                    |+.++|++.|++..+.  .|  +...|
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~-~tyn~lI~~~~~~--------------------g~~~~A~~l~~~M~~~g~~P--d~~ty  143 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNE-ATFTNGARLAVAK--------------------DDPEMAFDMVKQMKAFGIQP--RLRSY  143 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCH-HHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHTTCCC--CHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHhc--------------------CCHHHHHHHHHHHHHcCCCC--cccee
Confidence            234555655443  45654 4555555556654                    8899999999998875  56  47789


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159         216 LLIAKCYIEAGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       216 ~~la~~~~~~g~~~eA~~~~~kal~l~  242 (259)
                      ..+-..|...|+.++|.+.+++..+..
T Consensus       144 n~lI~~~~~~g~~~~A~~l~~~M~~~G  170 (501)
T 4g26_A          144 GPALFGFCRKGDADKAYEVDAHMVESE  170 (501)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999987643

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.57  E-value=0.59  Score=38.51  Aligned_cols=66  Identities=15%  Similarity=0.153  Sum_probs=58.9

Q ss_pred             HHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh
Q psy9159          34 EIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS  113 (259)
Q Consensus        34 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~  113 (259)
                      .+..++  .. |+.++|++.+...++.+|.|++....+-..++-.|++.              +|...++-+.+++|+..
T Consensus         3 ~~~~ll--~~-g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~--------------RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            3 QWKNAL--SE-GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFE--------------RADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             CHHHHT--TT-TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHHCGGGH
T ss_pred             cHHHHH--hC-CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHH--------------HHHHHHHHHHHhCchhh
Confidence            355677  67 99999999999999999999999999999999999875              99999999999999876


Q ss_pred             HHH
Q psy9159         114 NTQ  116 (259)
Q Consensus       114 ~~~  116 (259)
                      ..-
T Consensus        66 ~~a   68 (273)
T 1zbp_A           66 PGA   68 (273)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.51  E-value=0.9  Score=43.09  Aligned_cols=132  Identities=8%  Similarity=0.055  Sum_probs=72.8

Q ss_pred             chhHHHHHhhcCCcCC-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH--hhchhcccCcHHHHHHHHHHHHHHHHHHHH
Q psy9159          31 KYPEIDRLLYYGKKDD-KAKAYNLTMELNNKQPNDPDVLYRLAKACHC--LYDIKRRENDKEASEKYILQGIEYAKKAME  107 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~--~g~~~~~~~~~~~~~~~~~~A~~~~~kal~  107 (259)
                      +....-.++. -+ ++ ++.|++++++..+.+|... +++..+.+...  .++      ...+....+.+++..+...+.
T Consensus       250 L~~~Ll~~~~-~t-~~~~~~a~~~le~L~~~~p~~~-~~~~~~~i~~~~~~~~------~Ev~av~ll~~~l~~~~~~~~  320 (754)
T 4gns_B          250 LMYSLKSFIA-IT-PSLVDFTIDYLKGLTKKDPIHD-IYYKTAMITILDHIET------KELDMITILNETLDPLLSLLN  320 (754)
T ss_dssp             HHHHHHHHHH-TC-GGGHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHTTCGG------GHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc-cc-ccHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHhhhhhh
Confidence            3444556663 34 56 6889999999999999764 33333332221  111      111233334444433333332


Q ss_pred             h-CCCChHHHHHH---HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc
Q psy9159         108 L-APNNSNTQKWY---GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS  174 (259)
Q Consensus       108 ~-~P~~~~~~~~l---a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~  174 (259)
                      . .+.+.......   +.++..+.+|--   ..+..+.|....++|+.+-|.....|+.|+.+|..+++++
T Consensus       321 ~l~~~~~~~~~~~~~~~~LL~~Qa~FLl---~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e  388 (754)
T 4gns_B          321 DLPPRDADSARLMNCMSDLLNIQTNFLL---NRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYE  388 (754)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHH
T ss_pred             hhcccccccccccCcchHHHHHHHHHHh---ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHH
Confidence            2 34443322111   112222222211   1122336788999999999999999999999999986543

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.28  E-value=0.71  Score=35.51  Aligned_cols=106  Identities=11%  Similarity=0.060  Sum_probs=71.1

Q ss_pred             hCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcC
Q psy9159         108 LAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSD  187 (259)
Q Consensus       108 ~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~  187 (259)
                      +-|.+++.-..+++++...|++..             .+--...+  +-..+.+-...+|...                 
T Consensus        28 L~~~~~eY~lL~~I~LyyngEY~R-------------~Lf~L~~l--NT~Ts~YYk~LCy~kl-----------------   75 (242)
T 3kae_A           28 LLPCKPEYRMLMSIVLYLNGEYTR-------------ALFHLHKL--NTCTSKYYESLCYKKK-----------------   75 (242)
T ss_dssp             HC----CTHHHHHHHHHHTTCHHH-------------HHHHHHTC--CBHHHHHHHHHHHHHT-----------------
T ss_pred             HccCChHHHhhhhhhhhhcchHhH-------------HHHHHHhc--chHHHHHHHHHHHHHH-----------------
Confidence            445666666788888888887762             22222233  3445555556666654                 


Q ss_pred             CCCCcHHHHHHHHHHHHh--h---------------CCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         188 LDEPTAEDAIANCLKAEE--L---------------APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       188 ~~~g~~~eAi~~~~kAi~--l---------------~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                         .+|..|+.++++.++  +               +|.+---.+..+|..+...|+.+||+.++.......|-.+.-
T Consensus        76 ---KdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v  150 (242)
T 3kae_A           76 ---KDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV  150 (242)
T ss_dssp             ---TCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             ---HHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence               779999999999993  2               242222236779999999999999999999999888875543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.21  E-value=0.27  Score=44.32  Aligned_cols=65  Identities=14%  Similarity=0.053  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHH
Q psy9159          95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYE  169 (259)
Q Consensus        95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~  169 (259)
                      +..|..+|.+|+.+.|++...|..+|.+....++.-          .+.-+|-|++....-.+.+..+|...+-.
T Consensus       168 ~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l----------~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHL----------TTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHH----------HHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccH----------HHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            469999999999999999999999999998877654          34567778877776677777777766543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.19  E-value=0.39  Score=43.33  Aligned_cols=65  Identities=12%  Similarity=0.056  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHH
Q psy9159         140 VVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIA  219 (259)
Q Consensus       140 ~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la  219 (259)
                      ..|..+|.+|+.++|++...|+.||.+....                    |+.-+|+-+|.+++.... ..+.+..+|.
T Consensus       169 ~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~--------------------~~~l~a~y~y~rsl~~~~-Pf~~a~~nL~  227 (497)
T 1ya0_A          169 SQAESYYRHAAQLVPSNGQPYNQLAILASSK--------------------GDHLTTIFYYCRSIAVKF-PFPAASTNLQ  227 (497)
T ss_dssp             HHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHSSSB-CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCchHHHHHHHHhcc--------------------cccHHHHHHHHHHHhcCC-CChhHHHHHH
Confidence            3678999999999999999999999877653                    677888888888888765 4577777777


Q ss_pred             HHHHHh
Q psy9159         220 KCYIEA  225 (259)
Q Consensus       220 ~~~~~~  225 (259)
                      ..+...
T Consensus       228 ~~f~~~  233 (497)
T 1ya0_A          228 KALSKA  233 (497)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=91.44  E-value=0.45  Score=39.22  Aligned_cols=56  Identities=13%  Similarity=0.066  Sum_probs=52.0

Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      .|+.++|+......|+-+| .+......|...++-.|+++.|.+-++-+.+++|...
T Consensus        10 ~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A           10 EGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             CCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            4899999999999999999 7799999999999999999999999999999997643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.00  E-value=4.4  Score=37.77  Aligned_cols=42  Identities=19%  Similarity=0.118  Sum_probs=32.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKA  105 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~ka  105 (259)
                      |++++|++..+.     .+++..|-.+|..+...+++.              .|+..|.++
T Consensus       666 ~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~--------------~A~~~y~~~  707 (814)
T 3mkq_A          666 GQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFK--------------LAIEAFTNA  707 (814)
T ss_dssp             TCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHH
T ss_pred             CCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHH--------------HHHHHHHHc
Confidence            677777766543     467899999999999999875              888888776

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.43  E-value=1.1  Score=38.95  Aligned_cols=50  Identities=14%  Similarity=0.007  Sum_probs=45.7

Q ss_pred             CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159         190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKA  240 (259)
Q Consensus       190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~  240 (259)
                      .|++++|+..+.+++..+| ..-..|..|-.+|...|+..+|++.|+++.+
T Consensus       184 ~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          184 CGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4899999999999999999 7778899999999999999999999988744

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=87.29  E-value=8.3  Score=29.49  Aligned_cols=42  Identities=19%  Similarity=0.105  Sum_probs=33.8

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchh
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIK   82 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~   82 (259)
                      .+-+..+  .. |+++.|.+..++.     ++...|-+||......|++.
T Consensus        10 ~rF~LAL--~l-g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~   51 (177)
T 3mkq_B           10 IRFDLAL--EY-GNLDAALDEAKKL-----NDSITWERLIQEALAQGNAS   51 (177)
T ss_dssp             HHHHHHH--HT-TCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHH--hc-CCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChH
Confidence            3444555  45 9999999998876     67899999999999999865

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.24  E-value=1.5  Score=39.59  Aligned_cols=119  Identities=12%  Similarity=-0.032  Sum_probs=58.2

Q ss_pred             HhCCCChHHHHHHHHHHHHhhchhhHHHH---HhcH-HHHHHHHHHH-HccCCC-ChhHHHHHHHHHHHhhccchHHHHH
Q psy9159         107 ELAPNNSNTQKWYGICVGANGQFQSLKEK---IKCG-VVFRDQMNKA-IQMAPK-DFTLYSLKGRYQYEISKLSFFERKI  180 (259)
Q Consensus       107 ~~~P~~~~~~~~la~~~~~~~~~~~~~~~---~~~~-~~a~~~~~kA-l~l~P~-~~~~~~~lG~~~~~~~~~~~~~~~~  180 (259)
                      .+|+=++.+|+.++.++...|........   .... ......++.| +..|+. .+..+..+=+.|...          
T Consensus       175 tlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~----------  244 (523)
T 4b4t_S          175 SLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNN----------  244 (523)
T ss_dssp             ----------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHS----------
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHcc----------
Confidence            34666777787777777666654321100   0000 0112333333 345554 334556666666653          


Q ss_pred             HHHHhcCCCCCcHHHHHHHHHHHHhhCCCC---c---HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         181 AVLIVSDLDEPTAEDAIANCLKAEELAPAP---W---KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       181 ~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~---~---~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                                +.|+.|.....|+.  .|..   +   ...++++|.++..+++|.+|.+++..|+..-|.+..
T Consensus       245 ----------~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~  305 (523)
T 4b4t_S          245 ----------GEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK  305 (523)
T ss_dssp             ----------SCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred             ----------CcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence                      67899999999885  3411   1   344778999999999999999999999998876543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=86.07  E-value=15  Score=34.01  Aligned_cols=35  Identities=6%  Similarity=-0.117  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHH
Q psy9159          94 YILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLK  133 (259)
Q Consensus        94 ~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~  133 (259)
                      ++++|.+.+     ...+++..|..+|......++++.+.
T Consensus       667 ~~~~A~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~  701 (814)
T 3mkq_A          667 QLTLARDLL-----TDESAEMKWRALGDASLQRFNFKLAI  701 (814)
T ss_dssp             CHHHHHHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHH
Confidence            345666654     34578889999999999998887544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=85.15  E-value=3.2  Score=35.93  Aligned_cols=62  Identities=8%  Similarity=-0.043  Sum_probs=50.1

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      .. |++.+|+..+..++..+|-+-.++..+-.++...|+..       +.+..|......+.+-+.++|.
T Consensus       183 ~~-g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~-------~Al~~y~~~r~~L~~eLG~~P~  244 (388)
T 2ff4_A          183 AC-GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQS-------DALGAYRRVKTTLADDLGIDPG  244 (388)
T ss_dssp             HT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHH-------HHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHHHHHhCCCCC
Confidence            45 99999999999999999999999999999999999875       4455555555555555667775

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.69  E-value=3.8  Score=35.93  Aligned_cols=67  Identities=15%  Similarity=0.066  Sum_probs=41.1

Q ss_pred             CChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC--CCCcHHhHHHHHHHHHHhCCHHHHH
Q psy9159         155 KDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA--PAPWKENQLLIAKCYIEAGEYAKAV  232 (259)
Q Consensus       155 ~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~--P~~~~~~~~~la~~~~~~g~~~eA~  232 (259)
                      .-..++..+|.++++.                    |++++|.++|.++....  +.+-...++.+-.++...+++..+.
T Consensus       129 e~~~~~~~la~~~~~~--------------------Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~  188 (429)
T 4b4t_R          129 EQAQAWINLGEYYAQI--------------------GDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK  188 (429)
T ss_dssp             CCSSCCHHHHHHHHHH--------------------CCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence            3456889999999887                    45566666666655532  2233445555556666666666666


Q ss_pred             HHHHHHhcC
Q psy9159         233 QWLDKAKAI  241 (259)
Q Consensus       233 ~~~~kal~l  241 (259)
                      ..++|+..+
T Consensus       189 ~~~~ka~~~  197 (429)
T 4b4t_R          189 EKLEAVNSM  197 (429)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666666443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.92
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.89
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.89
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.87
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.82
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.8
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.78
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.77
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.76
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.73
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.73
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.71
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.71
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.69
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.68
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.67
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.62
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.58
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.57
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.54
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.54
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.54
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.52
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.51
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.51
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.49
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.49
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.47
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.46
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.44
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.4
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.34
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.34
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.32
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.23
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.13
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.13
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.11
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.11
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.07
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.02
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.98
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.94
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.71
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.53
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.36
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.36
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.36
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.09
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	89.05
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	87.99

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.7e-24  Score=178.99  Aligned_cols=203  Identities=15%  Similarity=0.109  Sum_probs=165.1

Q ss_pred             cCCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH
Q psy9159          28 NNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME  107 (259)
Q Consensus        28 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~  107 (259)
                      .+..++++..++  .. |++++|+..|+++++.+|+++++|+.+|.+|...|++.              +|+..++++++
T Consensus        19 ~~~~~~~g~~~~--~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~--------------~A~~~~~~al~   81 (323)
T d1fcha_          19 HPQPFEEGLRRL--QE-GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL--------------LAISALRRCLE   81 (323)
T ss_dssp             CSSHHHHHHHHH--HT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--------------HHHHHHHhhhc
Confidence            345688898888  67 99999999999999999999999999999999999875              99999999999


Q ss_pred             hCCCChHHHHHHHHHHHHhhchhhHHHHHh---------------------------------------cHHHHHHHHHH
Q psy9159         108 LAPNNSNTQKWYGICVGANGQFQSLKEKIK---------------------------------------CGVVFRDQMNK  148 (259)
Q Consensus       108 ~~P~~~~~~~~la~~~~~~~~~~~~~~~~~---------------------------------------~~~~a~~~~~k  148 (259)
                      ++|+++.+|..+|.++...|++..+.....                                       ...++...+++
T Consensus        82 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (323)
T d1fcha_          82 LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA  161 (323)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence            999999999999999999888765433211                                       12245677888


Q ss_pred             HHccCCCC--hhHHHHHHHHHHHhhccchHHHHHHHHHhcC--------------CCCCcHHHHHHHHHHHHhhCCCCcH
Q psy9159         149 AIQMAPKD--FTLYSLKGRYQYEISKLSFFERKIAVLIVSD--------------LDEPTAEDAIANCLKAEELAPAPWK  212 (259)
Q Consensus       149 Al~l~P~~--~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~--------------~~~g~~~eAi~~~~kAi~l~P~~~~  212 (259)
                      +++++|++  +.++..+|.++...++.+.....+..++-..              ...|++++|+++|+++++++| +++
T Consensus       162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~  240 (323)
T d1fcha_         162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYI  240 (323)
T ss_dssp             HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred             HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccH
Confidence            99999885  4667888988888777543322222111111              126999999999999999999 789


Q ss_pred             HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         213 ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       213 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                      .+++.+|.+|..+|++++|++.|++|++++|.+...
T Consensus       241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  276 (323)
T d1fcha_         241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP  276 (323)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhh
Confidence            999999999999999999999999999999987653

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.3e-22  Score=169.32  Aligned_cols=181  Identities=15%  Similarity=0.110  Sum_probs=149.3

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI  121 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~  121 (259)
                      .. |++++|+..++++++.+|++++++..+|.++...|++.              +|+..+++++.++|.++..+..+|.
T Consensus       181 ~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--------------~A~~~~~~~~~~~~~~~~~~~~l~~  245 (388)
T d1w3ba_         181 AQ-GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD--------------RAVAAYLRALSLSPNHAVVHGNLAC  245 (388)
T ss_dssp             TT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTT--------------HHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cc-CcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHH--------------HHHHHHHHhHHHhhhHHHHHHHHHH
Confidence            45 99999999999999999999999999999999999876              8888888888888888888888888


Q ss_pred             HHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcC--------------
Q psy9159         122 CVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSD--------------  187 (259)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~--------------  187 (259)
                      ++...|++.          .|...++++++++|+++.++..+|.++...++.....+.+..+....              
T Consensus       246 ~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  315 (388)
T d1w3ba_         246 VYYEQGLID----------LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK  315 (388)
T ss_dssp             HHHHTTCHH----------HHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHH
Confidence            888777766          45678888888888888888888888877766543322222111111              


Q ss_pred             CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         188 LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       188 ~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                      ...|++++|+.+|+++++++| +++.+++.+|.+|..+|++++|+++|++|++++|++++.
T Consensus       316 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a  375 (388)
T d1w3ba_         316 REQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA  375 (388)
T ss_dssp             HTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            125999999999999999999 789999999999999999999999999999999987653

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-22  Score=173.12  Aligned_cols=161  Identities=9%  Similarity=-0.019  Sum_probs=142.6

Q ss_pred             CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159          42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI  121 (259)
Q Consensus        42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~  121 (259)
                      .. +.+++|++.++++|+.+|++.++|+.+|.++..+|...             ++|+..++++++++|++..+|.++|.
T Consensus        55 ~~-e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~-------------~eal~~~~~al~~~p~~~~a~~~~~~  120 (315)
T d2h6fa1          55 RD-ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL-------------HEEMNYITAIIEEQPKNYQVWHHRRV  120 (315)
T ss_dssp             HT-CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH-------------HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hC-CchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCH-------------HHHHHHHHHHHHHHHhhhhHHHHHhH
Confidence            45 89999999999999999999999999999999987532             49999999999999999999999999


Q ss_pred             HHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH
Q psy9159         122 CVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL  201 (259)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~  201 (259)
                      ++..+|++.          ++++.++++++++|++..+|+.+|.++...                    |++++|+.+|+
T Consensus       121 ~~~~l~~~~----------eAl~~~~kal~~dp~n~~a~~~~~~~~~~~--------------------~~~~~Al~~~~  170 (315)
T d2h6fa1         121 LVEWLRDPS----------QELEFIADILNQDAKNYHAWQHRQWVIQEF--------------------KLWDNELQYVD  170 (315)
T ss_dssp             HHHHHTCCT----------THHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------------TCCTTHHHHHH
T ss_pred             HHHhhccHH----------HHHHHHhhhhhhhhcchHHHHHHHHHHHHH--------------------HhhHHHHHHHH
Confidence            999999987          467899999999999999999999998876                    67888888888


Q ss_pred             HHHhhCCCCcHHhHHHHHHHHHHhCC------HHHHHHHHHHHhcCCCCCcc
Q psy9159         202 KAEELAPAPWKENQLLIAKCYIEAGE------YAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       202 kAi~l~P~~~~~~~~~la~~~~~~g~------~~eA~~~~~kal~l~p~~~~  247 (259)
                      ++++++| .+..+|.++|.++...++      +++|++.+.++++++|.+..
T Consensus       171 ~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~  221 (315)
T d2h6fa1         171 QLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES  221 (315)
T ss_dssp             HHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHCC-ccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchH
Confidence            8888888 678888888888887776      57888888888888887653

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.1e-21  Score=162.66  Aligned_cols=197  Identities=17%  Similarity=0.138  Sum_probs=147.2

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      ++.+...+  .. |++++|+..++++++.+|+++++++.+|.+|...|++.              +|+..++++++++|+
T Consensus         3 l~la~~~~--~~-G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~--------------~A~~~~~~al~~~p~   65 (388)
T d1w3ba_           3 MELAHREY--QA-GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLD--------------RSAHFSTLAIKQNPL   65 (388)
T ss_dssp             CTHHHHHH--HH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHH--Hc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCC
Confidence            56677777  56 99999999999999999999999999999999999875              999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHH-------------------------------------------------------
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKI-------------------------------------------------------  136 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~-------------------------------------------------------  136 (259)
                      ++.++..+|.++...|++..+....                                                       
T Consensus        66 ~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (388)
T d1w3ba_          66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL  145 (388)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999988876533210                                                       


Q ss_pred             -------------------------------------hcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHH
Q psy9159         137 -------------------------------------KCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERK  179 (259)
Q Consensus       137 -------------------------------------~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~  179 (259)
                                                           +....+...++++++++|+++.++..+|.++...++++.....
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  225 (388)
T d1w3ba_         146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA  225 (388)
T ss_dssp             HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred             cccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHH
Confidence                                                 0012345678888999999999999999988777665432222


Q ss_pred             HHHHHhcC--------------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159         180 IAVLIVSD--------------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       180 ~~~~~~~~--------------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~  245 (259)
                      +.......              ...|++++|+.+|+++++++| +++.++..+|.++...|++++|++.+++++...|.+
T Consensus       226 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  304 (388)
T d1w3ba_         226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH  304 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCcc
Confidence            21100000              114778888888888888888 667777777777777776666666666666666555


Q ss_pred             c
Q psy9159         246 Y  246 (259)
Q Consensus       246 ~  246 (259)
                      .
T Consensus       305 ~  305 (388)
T d1w3ba_         305 A  305 (388)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=3e-21  Score=158.14  Aligned_cols=188  Identities=16%  Similarity=0.129  Sum_probs=153.5

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      +..+..+.  .. |++++|++.|+++++.+|+++++|+.+|.+|..+|++.              +|+..|+++++++|+
T Consensus        41 ~~~G~~y~--~~-g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~--------------~A~~~~~~al~~~p~  103 (259)
T d1xnfa_          41 YERGVLYD--SL-GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD--------------AAYEAFDSVLELDPT  103 (259)
T ss_dssp             HHHHHHHH--HT-TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHH--HC-CCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHH--------------HhhhhhhHHHHHHhh
Confidence            45565565  56 99999999999999999999999999999999999975              999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccch---HHHHH--------
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF---FERKI--------  180 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~---~~~~~--------  180 (259)
                      ++.++..+|.++...|++.          .+...++++++++|++...+..++..+...+....   +....        
T Consensus       104 ~~~a~~~lg~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (259)
T d1xnfa_         104 YNYAHLNRGIALYYGGRDK----------LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW  173 (259)
T ss_dssp             CTHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST
T ss_pred             hhhhHHHHHHHHHHHhhHH----------HHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh
Confidence            9999999999999999887          56789999999999999988888876655432110   00000        


Q ss_pred             ----HHHHhcC-CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         181 ----AVLIVSD-LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       181 ----~~~~~~~-~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                          .....+. ...+.++.+...+..++.+.| ....++++||.+|..+|++++|+++|++|++.+|++..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  244 (259)
T d1xnfa_         174 GWNIVEFYLGNISEQTLMERLKADATDNTSLAE-HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  244 (259)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence                0111111 113557888888888888888 67889999999999999999999999999999998753

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=6.7e-20  Score=155.99  Aligned_cols=174  Identities=11%  Similarity=0.069  Sum_probs=150.0

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      ..++..+.  ...+++++|+..++++++.+|+++.+|..+|.++..+|++.              +|++.+.++++++|+
T Consensus        81 ~~r~~~l~--~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~--------------eAl~~~~kal~~dp~  144 (315)
T d2h6fa1          81 HFRRVLLK--SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS--------------QELEFIADILNQDAK  144 (315)
T ss_dssp             HHHHHHHH--HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCT--------------THHHHHHHHHHHCTT
T ss_pred             HHHHHHHH--HhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHH--------------HHHHHHhhhhhhhhc
Confidence            34444444  33146999999999999999999999999999999999986              999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCC
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEP  191 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g  191 (259)
                      +..+|..+|.++..++++.          .+.+.++++|+++|++..+|+.+|.++...+..              ...+
T Consensus       145 n~~a~~~~~~~~~~~~~~~----------~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~--------------~~~~  200 (315)
T d2h6fa1         145 NYHAWQHRQWVIQEFKLWD----------NELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY--------------NDRA  200 (315)
T ss_dssp             CHHHHHHHHHHHHHHTCCT----------THHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS--------------CSHH
T ss_pred             chHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc--------------chhh
Confidence            9999999999999999988          467899999999999999999999988765432              1125


Q ss_pred             cHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         192 TAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       192 ~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      .+++|++++.++++++| ++..+|.+++.++...| .+++.+.+++++++.|....
T Consensus       201 ~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~  254 (315)
T d2h6fa1         201 VLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSS  254 (315)
T ss_dssp             HHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCC
T ss_pred             hhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCC
Confidence            58999999999999999 78999999999876544 68899999999999987653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.2e-19  Score=147.60  Aligned_cols=158  Identities=10%  Similarity=-0.012  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHH
Q psy9159          65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRD  144 (259)
Q Consensus        65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~  144 (259)
                      .+..+..|..+...|++.              +|+..|+++++.+|+++.+|..+|.++...|++.          .|..
T Consensus        19 ~~~~~~~g~~~~~~g~~~--------------~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~----------~A~~   74 (323)
T d1fcha_          19 HPQPFEEGLRRLQEGDLP--------------NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL----------LAIS   74 (323)
T ss_dssp             CSSHHHHHHHHHHTTCHH--------------HHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH----------HHHH
T ss_pred             hHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH----------HHHH
Confidence            345678999999999875              9999999999999999999999999999999887          5678


Q ss_pred             HHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHH-------------------------------------------
Q psy9159         145 QMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIA-------------------------------------------  181 (259)
Q Consensus       145 ~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~-------------------------------------------  181 (259)
                      .++++++++|+++.+|..+|.++...++.....+.+.                                           
T Consensus        75 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (323)
T d1fcha_          75 ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE  154 (323)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHH
T ss_pred             HHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHH
Confidence            9999999999999999999998877655321110000                                           


Q ss_pred             ------HHHhcC----------------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159         182 ------VLIVSD----------------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK  239 (259)
Q Consensus       182 ------~~~~~~----------------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal  239 (259)
                            .++.-.                ...|++++|+.+|+++++.+| +++.+|..+|.+|..+|++++|++.|++++
T Consensus       155 a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  233 (323)
T d1fcha_         155 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRAL  233 (323)
T ss_dssp             HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHH
Confidence                  000000                016999999999999999999 789999999999999999999999999999


Q ss_pred             cCCCCCcc
Q psy9159         240 AIPVVSYE  247 (259)
Q Consensus       240 ~l~p~~~~  247 (259)
                      +++|++++
T Consensus       234 ~~~p~~~~  241 (323)
T d1fcha_         234 ELQPGYIR  241 (323)
T ss_dssp             HHCTTCHH
T ss_pred             HHhhccHH
Confidence            99988764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.3e-17  Score=136.12  Aligned_cols=157  Identities=11%  Similarity=0.043  Sum_probs=138.4

Q ss_pred             CCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNK----QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYG  120 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la  120 (259)
                      ++++.|+..+++++..    +|..+.+++.+|.+|...|++.              +|+..|+++|.++|+++.+|..+|
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~--------------~A~~~~~~al~l~p~~~~a~~~lg   78 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA--------------LARNDFSQALAIRPDMPEVFNYLG   78 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHH--------------HHHHHHHHhhccCCCCHHHHhhhc
Confidence            7788888888898875    3455679999999999999875              999999999999999999999999


Q ss_pred             HHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHH
Q psy9159         121 ICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANC  200 (259)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~  200 (259)
                      .++...|++.          .|+..++++++++|+++.++..+|.++...                    |++++|+.+|
T Consensus        79 ~~~~~~g~~~----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--------------------g~~~~A~~~~  128 (259)
T d1xnfa_          79 IYLTQAGNFD----------AAYEAFDSVLELDPTYNYAHLNRGIALYYG--------------------GRDKLAQDDL  128 (259)
T ss_dssp             HHHHHTTCHH----------HHHHHHHHHHHHCTTCTHHHHHHHHHHHHT--------------------TCHHHHHHHH
T ss_pred             hHHHHHHHHH----------HhhhhhhHHHHHHhhhhhhHHHHHHHHHHH--------------------hhHHHHHHHH
Confidence            9999999987          578999999999999999999999999875                    8899999999


Q ss_pred             HHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         201 LKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       201 ~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      +++++++| ........++.++...+..+.+..........++...
T Consensus       129 ~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (259)
T d1xnfa_         129 LAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW  173 (259)
T ss_dssp             HHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST
T ss_pred             HHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh
Confidence            99999999 6788888899999999988777777777777665544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.77  E-value=3.3e-18  Score=129.33  Aligned_cols=133  Identities=14%  Similarity=-0.003  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHH
Q psy9159          89 EASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQY  168 (259)
Q Consensus        89 ~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~  168 (259)
                      -++++.|++|+..++++++++|+|++++.++|.++...+++....+......+++..+++||+++|+++.+|+.+|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            36788899999999999999999999999999999999998888777777888999999999999999999999999998


Q ss_pred             HhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHH
Q psy9159         169 EISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKA  231 (259)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA  231 (259)
                      ..+.+.......         .+.+++|+++|++|++++| ++..++..|+.+....+.+.++
T Consensus        87 ~~g~~~~~~~~~---------~~~~~~A~~~~~kal~l~P-~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          87 SFAFLTPDETEA---------KHNFDLATQFFQQAVDEQP-DNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHCCCHHHH---------HHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HcccchhhHHHH---------HHhHHHhhhhhhcccccCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            876542111110         1458999999999999999 7888888888887655555443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=9.4e-18  Score=142.80  Aligned_cols=197  Identities=8%  Similarity=0.014  Sum_probs=156.6

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      +..++|++.++++++.+|+++++|...+.++..+++..    ......+.+++|+..++++++.+|+++.+|..+|.++.
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~----~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~  118 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEK----SPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  118 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhc----chHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH
Confidence            44589999999999999999999999999988887653    44567788899999999999999999999999999988


Q ss_pred             Hhhch--hhHHHH-------------------------HhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchH-
Q psy9159         125 ANGQF--QSLKEK-------------------------IKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFF-  176 (259)
Q Consensus       125 ~~~~~--~~~~~~-------------------------~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~-  176 (259)
                      ..+..  ..+...                         .+....+...++++++++|++..+|+.+|.++..+++.... 
T Consensus       119 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~  198 (334)
T d1dcea1         119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG  198 (334)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHH
Confidence            77642  222111                         01123567888999999999999999999999988764210 


Q ss_pred             -----------------HHHH------------HHHHhcCCC--------------CCcHHHHHHHHHHHHhhCCCCcHH
Q psy9159         177 -----------------ERKI------------AVLIVSDLD--------------EPTAEDAIANCLKAEELAPAPWKE  213 (259)
Q Consensus       177 -----------------~~~~------------~~~~~~~~~--------------~g~~~eAi~~~~kAi~l~P~~~~~  213 (259)
                                       ....            ...+...+.              .|++++|+..+.++++.+| .+..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~  277 (334)
T d1dcea1         199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENK-WCLL  277 (334)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH-HHHH
T ss_pred             HHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc-hHHH
Confidence                             0000            001111111              4889999999999999999 7899


Q ss_pred             hHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         214 NQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       214 ~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                      ++..+|.+|..+|++++|+++|+++++++|...
T Consensus       278 ~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~  310 (334)
T d1dcea1         278 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRA  310 (334)
T ss_dssp             HHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccH
Confidence            999999999999999999999999999998643

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.7e-17  Score=119.54  Aligned_cols=111  Identities=11%  Similarity=0.058  Sum_probs=103.6

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA  109 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~  109 (259)
                      ++..++..++  .. |++++|+..|+++++.+|+++.+|..+|.+|..+|++.              +|+..+.++++++
T Consensus         5 ~l~~~g~~~~--~~-g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~--------------~A~~~~~~al~~~   67 (117)
T d1elwa_           5 ELKEKGNKAL--SV-GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQ--------------KAYEDGCKTVDLK   67 (117)
T ss_dssp             HHHHHHHHHH--HT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHH--Hc-CCHHHHHHHHHHHHhcCCcchhhhhccccccccccccc--------------ccchhhhhHHHhc
Confidence            3557888898  67 99999999999999999999999999999999999976              9999999999999


Q ss_pred             CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q psy9159         110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQ  167 (259)
Q Consensus       110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~  167 (259)
                      |+++.+|+++|.++..+|++.          .|+..++++++++|+++.++..++++.
T Consensus        68 p~~~~~~~~~g~~~~~~~~~~----------~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          68 PDWGKGYSRKAAALEFLNRFE----------EAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHccCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            999999999999999999988          578999999999999999999999864

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.2e-17  Score=124.10  Aligned_cols=125  Identities=14%  Similarity=0.153  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHH
Q psy9159          67 VLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQM  146 (259)
Q Consensus        67 ~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~  146 (259)
                      -+...|..|+..|++.              +|+..|+++++++|+++.+|..+|.++...|++.          .|...+
T Consensus        12 ~l~~~gn~~~~~~~y~--------------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~----------~A~~~~   67 (159)
T d1a17a_          12 ELKTQANDYFKAKDYE--------------NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG----------YALGDA   67 (159)
T ss_dssp             HHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH----------HHHHHH
T ss_pred             HHHHHHHHHHHcCCHH--------------HHHHHhhhccccchhhhhhhhhhHHHHHhccccc----------hHHHHH
Confidence            3455678888888875              9999999999999999999999999999999987          578999


Q ss_pred             HHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHH--
Q psy9159         147 NKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIE--  224 (259)
Q Consensus       147 ~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~--  224 (259)
                      +++|+++|+++.+|+.+|.++..+                    |++++|+.+|++++.++| ++..++..++.+...  
T Consensus        68 ~kal~~~p~~~~a~~~~g~~~~~~--------------------g~~~eA~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~  126 (159)
T d1a17a_          68 TRAIELDKKYIKGYYRRAASNMAL--------------------GKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVK  126 (159)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccchHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence            999999999999999999999875                    889999999999999999 778888888877544  


Q ss_pred             hCCHHHHHHHHH
Q psy9159         225 AGEYAKAVQWLD  236 (259)
Q Consensus       225 ~g~~~eA~~~~~  236 (259)
                      .+.+++|+....
T Consensus       127 ~~~~~~a~~~~~  138 (159)
T d1a17a_         127 QKAFERAIAGDE  138 (159)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcH
Confidence            455777765433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=9.4e-17  Score=126.75  Aligned_cols=131  Identities=16%  Similarity=0.054  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHH
Q psy9159          68 LYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMN  147 (259)
Q Consensus        68 ~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~  147 (259)
                      +|..|..+...|++.              +|++.|.+   +.|.++.+|+++|.++..+|++.          .|.+.|+
T Consensus         8 l~~~g~~~~~~~d~~--------------~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~----------~A~~~~~   60 (192)
T d1hh8a_           8 LWNEGVLAADKKDWK--------------GALDAFSA---VQDPHSRICFNIGCMYTILKNMT----------EAEKAFT   60 (192)
T ss_dssp             HHHHHHHHHHTTCHH--------------HHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHH----------HHHHHHH
T ss_pred             HHHHHHHHHHCCCHH--------------HHHHHHHh---cCCCCHHHHHHHHHHHHHcCCch----------hHHHHHH
Confidence            456688888888875              89998886   47778999999999999999988          5789999


Q ss_pred             HHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc---------------H
Q psy9159         148 KAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW---------------K  212 (259)
Q Consensus       148 kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~---------------~  212 (259)
                      +||++||+++.+|+.+|.++.++                    |++++|++.|++|++..|.+.               .
T Consensus        61 kAl~ldp~~~~a~~~~g~~~~~~--------------------g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~  120 (192)
T d1hh8a_          61 RSINRDKHLAVAYFQRGMLYYQT--------------------EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC  120 (192)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHH
T ss_pred             HHHHHhhhhhhhHHHHHHHHHhh--------------------ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchH
Confidence            99999999999999999999885                    889999999999998766221               3


Q ss_pred             HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159         213 ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       213 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~  245 (259)
                      .+++++|.++..+|++++|++.+++|+++.|..
T Consensus       121 e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         121 EVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            568899999999999999999999999999874

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.3e-16  Score=115.88  Aligned_cols=110  Identities=14%  Similarity=0.066  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHH
Q psy9159          68 LYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMN  147 (259)
Q Consensus        68 ~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~  147 (259)
                      +...|..++..|++.              +|+..|+++|+++|+++.+|.++|.++...|++.          .|+..++
T Consensus         6 l~~~g~~~~~~g~~~--------------eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~----------~A~~~~~   61 (117)
T d1elwa_           6 LKEKGNKALSVGNID--------------DALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQ----------KAYEDGC   61 (117)
T ss_dssp             HHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH----------HHHHHHH
T ss_pred             HHHHHHHHHHcCCHH--------------HHHHHHHHHHhcCCcchhhhhccccccccccccc----------ccchhhh
Confidence            445667777777654              7888888888888888888888888877777776          4567777


Q ss_pred             HHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHH
Q psy9159         148 KAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCY  222 (259)
Q Consensus       148 kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~  222 (259)
                      ++++++|+++.+|+.+|.++..+                    |++++|+.+|+++++++| +++.++..++.+.
T Consensus        62 ~al~~~p~~~~~~~~~g~~~~~~--------------------~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~l~  115 (117)
T d1elwa_          62 KTVDLKPDWGKGYSRKAAALEFL--------------------NRFEEAKRTYEEGLKHEA-NNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHH
T ss_pred             hHHHhccchhhHHHHHHHHHHHc--------------------cCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHh
Confidence            88888888888888888777664                    667888888888888888 5677777766654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9.3e-17  Score=122.67  Aligned_cols=115  Identities=11%  Similarity=0.013  Sum_probs=105.6

Q ss_pred             cCCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH
Q psy9159          28 NNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME  107 (259)
Q Consensus        28 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~  107 (259)
                      .+.+..++..++  .. |+|++|+..|+++++.+|+++.+|+++|.+|..+|++.              +|+..++++|+
T Consensus        10 a~~l~~~gn~~~--~~-~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~--------------~A~~~~~kal~   72 (159)
T d1a17a_          10 AEELKTQANDYF--KA-KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG--------------YALGDATRAIE   72 (159)
T ss_dssp             HHHHHHHHHHHH--HT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--Hc-CCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccc--------------hHHHHHHHHHH
Confidence            345678888898  67 99999999999999999999999999999999999875              99999999999


Q ss_pred             hCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHH
Q psy9159         108 LAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYE  169 (259)
Q Consensus       108 ~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~  169 (259)
                      ++|+++.+|..+|.++..+|++.          .+...++++++++|+++.++..++.+...
T Consensus        73 ~~p~~~~a~~~~g~~~~~~g~~~----------eA~~~~~~a~~~~p~~~~~~~~l~~~~~~  124 (159)
T d1a17a_          73 LDKKYIKGYYRRAASNMALGKFR----------AALRDYETVVKVKPHDKDAKMKYQECNKI  124 (159)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HcccchHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999988          56789999999999999999999886543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.1e-16  Score=124.72  Aligned_cols=152  Identities=10%  Similarity=0.006  Sum_probs=125.7

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN  111 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~  111 (259)
                      ..++..++  .. |++++|++.|+++   .|.++.+|+++|.+|..+|++.              +|++.|++||+++|+
T Consensus         9 ~~~g~~~~--~~-~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~--------------~A~~~~~kAl~ldp~   68 (192)
T d1hh8a_           9 WNEGVLAA--DK-KDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMT--------------EAEKAFTRSINRDKH   68 (192)
T ss_dssp             HHHHHHHH--HT-TCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHH--HC-CCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCch--------------hHHHHHHHHHHHhhh
Confidence            34566666  56 9999999999875   5678999999999999999975              999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh----------------hHHHHHHHHHHHhhccch
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF----------------TLYSLKGRYQYEISKLSF  175 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~----------------~~~~~lG~~~~~~~~~~~  175 (259)
                      ++.+|..+|.++..+|++.          .|...+++|+...|.+.                .+++.+|.++..+     
T Consensus        69 ~~~a~~~~g~~~~~~g~~~----------~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~-----  133 (192)
T d1hh8a_          69 LAVAYFQRGMLYYQTEKYD----------LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK-----  133 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT-----
T ss_pred             hhhhHHHHHHHHHhhccHH----------HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHC-----
Confidence            9999999999999999988          56788999998877653                4567777777664     


Q ss_pred             HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159         176 FERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY  246 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~  246 (259)
                                     |++++|++.+.+|+++.| ..            ..+..+.|+..+.+....+|...
T Consensus       134 ---------------~~~~~A~~~l~~A~~~~~-~~------------~~~~~~~Al~~~~~~~~~~~~~i  176 (192)
T d1hh8a_         134 ---------------EEWKKAEEQLALATSMKS-EP------------RHSKIDKAMECVWKQKLYEPVVI  176 (192)
T ss_dssp             ---------------TCHHHHHHHHHHHHTTCC-SG------------GGGHHHHHHHHHHTTCCCCCCCC
T ss_pred             ---------------CCHHHHHHHHHHHHhcCC-Cc------------chHHHHHHHHHHHhhhhCCcccc
Confidence                           889999999999999999 43            22345678888888877777543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.69  E-value=6.8e-16  Score=116.34  Aligned_cols=119  Identities=12%  Similarity=0.032  Sum_probs=102.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      +.|++|+..|+++++.+|+++++++++|.++..++++.    ...+..+.+++|+..+++|++++|+++.+|+++|.++.
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~----~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFH----SISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhh----hhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            67999999999999999999999999999999998764    44467788999999999999999999999999999999


Q ss_pred             HhhchhhHH-HHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q psy9159         125 ANGQFQSLK-EKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQ  167 (259)
Q Consensus       125 ~~~~~~~~~-~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~  167 (259)
                      .+|...+.. ........+.+.|++|++++|++..++..||...
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence            888654322 2223345688999999999999999999999754

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=9.1e-17  Score=126.24  Aligned_cols=123  Identities=14%  Similarity=0.045  Sum_probs=103.4

Q ss_pred             CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHH
Q psy9159          64 DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFR  143 (259)
Q Consensus        64 ~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~  143 (259)
                      +++.+...|..++..|++.              +|+..|++||+++|+++.+|..+|.++...|++.          .|+
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~--------------~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~----------~Ai   58 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYP--------------EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE----------QAL   58 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH----------HHH
T ss_pred             hHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhh----------hhh
Confidence            4567788999999999875              9999999999999999999999999999999987          578


Q ss_pred             HHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHH
Q psy9159         144 DQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYI  223 (259)
Q Consensus       144 ~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~  223 (259)
                      ..+++||+++|+++.+|+.+|.++..+                    |++++|+.+|++|++++| +....+...+..+.
T Consensus        59 ~~~~~al~l~p~~~~a~~~lg~~~~~l--------------------~~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~l  117 (201)
T d2c2la1          59 ADCRRALELDGQSVKAHFFLGQCQLEM--------------------ESYDEAIANLQRAYSLAK-EQRLNFGDDIPSAL  117 (201)
T ss_dssp             HHHHHHTTSCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence            999999999999999999999999885                    889999999999999998 44444444444444


Q ss_pred             HhCCHHHH
Q psy9159         224 EAGEYAKA  231 (259)
Q Consensus       224 ~~g~~~eA  231 (259)
                      ..++...+
T Consensus       118 ~~~~~~~~  125 (201)
T d2c2la1         118 RIAKKKRW  125 (201)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhHH
Confidence            44443433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.4e-16  Score=125.15  Aligned_cols=105  Identities=18%  Similarity=0.249  Sum_probs=96.5

Q ss_pred             ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCC
Q psy9159         112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEP  191 (259)
Q Consensus       112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g  191 (259)
                      ++..+...|..+...|++.          .|+..|++||+++|+++.+|..+|.+|...                    |
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~----------~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~--------------------~   52 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYP----------EAAACYGRAITRNPLVAVYYTNRALCYLKM--------------------Q   52 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--------------------T
T ss_pred             hHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHhHHHHHhhh--------------------h
Confidence            4566778899999999988          578999999999999999999999999885                    8


Q ss_pred             cHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         192 TAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       192 ~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                      ++++|+.+|++|++++| +++.+|+++|.+|..+|++++|+..|++|++++|.+..
T Consensus        53 ~~~~Ai~~~~~al~l~p-~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~  107 (201)
T d2c2la1          53 QPEQALADCRRALELDG-QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL  107 (201)
T ss_dssp             CHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhhhhHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence            89999999999999999 78999999999999999999999999999999886554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.62  E-value=2e-15  Score=108.64  Aligned_cols=95  Identities=15%  Similarity=-0.023  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcH
Q psy9159         114 NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTA  193 (259)
Q Consensus       114 ~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  193 (259)
                      +.++..|.++...|++.          .|+..++++++++|+++.+|..+|.++...                    |++
T Consensus        17 ~~~~~~g~~~~~~g~~~----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--------------------~~~   66 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLA----------EAALAFEAVCQKEPEREEAWRSLGLTQAEN--------------------EKD   66 (112)
T ss_dssp             SCHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------------------TCH
T ss_pred             HHHHHHHHHHHHHhhhH----------HHHHHHhhhcccccccchhhhhhhhhhhhh--------------------hhH
Confidence            34567899999898887          577999999999999999999999999875                    889


Q ss_pred             HHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159         194 EDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK  239 (259)
Q Consensus       194 ~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal  239 (259)
                      ++|+.+|+++++++| ++..++..||.+|..+|++++|++.+++.+
T Consensus        67 ~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          67 GLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhccccccccccc-ccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            999999999999999 789999999999999999999999999986

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1e-14  Score=106.45  Aligned_cols=106  Identities=10%  Similarity=-0.043  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC--hhHHHHHHHHHHH
Q psy9159          92 EKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD--FTLYSLKGRYQYE  169 (259)
Q Consensus        92 ~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~--~~~~~~lG~~~~~  169 (259)
                      .+.+++|.+.|+++++++|+++.+++++|+++...++...       ..+|+..++++++.+|++  +.+|+.+|.+|++
T Consensus        12 ~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d-------~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_          12 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDD-------IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHH-------HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHH-------HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            3456799999999999999999999999999976443321       225788999999999876  4589999999988


Q ss_pred             hhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHh
Q psy9159         170 ISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEA  225 (259)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~  225 (259)
                      .                    |++++|+++|+++++++| ++..+...++.+...+
T Consensus        85 ~--------------------g~~~~A~~~~~~aL~~~P-~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          85 L--------------------KEYEKALKYVRGLLQTEP-QNNQAKELERLIDKAM  119 (122)
T ss_dssp             T--------------------TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred             H--------------------hhhHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHH
Confidence            5                    889999999999999999 7788887777766544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.6e-14  Score=108.32  Aligned_cols=122  Identities=17%  Similarity=0.119  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHhhch
Q psy9159          65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS---------------NTQKWYGICVGANGQF  129 (259)
Q Consensus        65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~---------------~~~~~la~~~~~~~~~  129 (259)
                      +..+...|..++..|++.              +|+..|++||...|...               .++.++|.++...|++
T Consensus        13 a~~l~~~G~~~~~~~~~~--------------~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~   78 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYK--------------QALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF   78 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhc
Confidence            455667788888888775              99999999999988754               3455677777777776


Q ss_pred             hhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC
Q psy9159         130 QSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA  209 (259)
Q Consensus       130 ~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~  209 (259)
                      .          .+...++++|+++|+++.+|+.+|.+++.+                    |++++|+.+|+++++++| 
T Consensus        79 ~----------~A~~~~~~al~~~p~~~~a~~~~g~~~~~~--------------------g~~~~A~~~~~~al~l~P-  127 (170)
T d1p5qa1          79 S----------AAIESCNKALELDSNNEKGLSRRGEAHLAV--------------------NDFELARADFQKVLQLYP-  127 (170)
T ss_dssp             H----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHCS-
T ss_pred             c----------cccchhhhhhhccccchhhhHHHHHHHHHh--------------------hhHHHHHHHHHHHHHhCC-
Confidence            6          567888888888888888888888888875                    778888888888888888 


Q ss_pred             CcHHhHHHHHHHHHHhCCHHHH
Q psy9159         210 PWKENQLLIAKCYIEAGEYAKA  231 (259)
Q Consensus       210 ~~~~~~~~la~~~~~~g~~~eA  231 (259)
                      ++..+...++.+...+++..+.
T Consensus       128 ~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1         128 NNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH
Confidence            6788888888887777665544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=8.4e-13  Score=110.73  Aligned_cols=193  Identities=9%  Similarity=-0.025  Sum_probs=146.3

Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHH
Q psy9159          46 DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL-APNNSNTQKWYGICVG  124 (259)
Q Consensus        46 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~-~P~~~~~~~~la~~~~  124 (259)
                      ..+++...|++++...|.++++|+..+.-+...++.....++........++|...+++|++. .|.+...|..++.+..
T Consensus        31 ~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~  110 (308)
T d2onda1          31 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            356788899999999999999999888776655543211223334566788999999999974 7888888888888888


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChh-HHHHHHHHHHHhhccchHHHHHHHHHhcC---------------C
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT-LYSLKGRYQYEISKLSFFERKIAVLIVSD---------------L  188 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~-~~~~lG~~~~~~~~~~~~~~~~~~~~~~~---------------~  188 (259)
                      ..|+.+          .+...++++|+..|.+.. +|..++.+..+.++++...+.+..++...               .
T Consensus       111 ~~~~~~----------~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~  180 (308)
T d2onda1         111 SRMKYE----------KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY  180 (308)
T ss_dssp             HTTCHH----------HHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred             hcccHH----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            887766          456778888888887754 67777777766655433222222111110               0


Q ss_pred             CCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159         189 DEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       189 ~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~  249 (259)
                      ..|+.+.|...|+++++..| +++..|...+..+...|+++.|...|++|+...|.++++.
T Consensus       181 ~~~~~~~a~~i~e~~l~~~p-~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~  240 (308)
T d2onda1         181 CSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS  240 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC
T ss_pred             hccCHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH
Confidence            14789999999999999999 7789999999999999999999999999999998887643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.4e-15  Score=107.61  Aligned_cols=95  Identities=8%  Similarity=0.024  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc--HHhHHH
Q psy9159         140 VVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW--KENQLL  217 (259)
Q Consensus       140 ~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~--~~~~~~  217 (259)
                      .+|.+.|+++|.++|+++.+++++|.++...+.                 .+++++|+..|+++++.+| .+  ..++++
T Consensus        16 ~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~-----------------~~d~~~Ai~~l~~~l~~~~-~~~~~~~~~~   77 (122)
T d1nzna_          16 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY-----------------NDDIRKGIVLLEELLPKGS-KEEQRDYVFY   77 (122)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSS-----------------HHHHHHHHHHHHHHTTTSC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc-----------------hHHHHHHHHHHHHHHhccC-CchHHHHHHH
Confidence            367899999999999999999999998865432                 1567899999999999998 43  347999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159         218 IAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS  252 (259)
Q Consensus       218 la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~  252 (259)
                      ||.+|..+|++++|+++|+++++++|++.+...++
T Consensus        78 Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~  112 (122)
T d1nzna_          78 LAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  112 (122)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            99999999999999999999999999998755544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.54  E-value=3.9e-14  Score=108.89  Aligned_cols=79  Identities=20%  Similarity=0.270  Sum_probs=58.5

Q ss_pred             HHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCC
Q psy9159         148 KAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGE  227 (259)
Q Consensus       148 kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~  227 (259)
                      +...++|.+..++..+|.++.++                    |++++|+.+|++|++++| +++.+|+.+|.+|..+|+
T Consensus        68 ~~~~~~~~~~~~~~nla~~~~~~--------------------~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~  126 (169)
T d1ihga1          68 DGAKLQPVALSCVLNIGACKLKM--------------------SDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKE  126 (169)
T ss_dssp             HHGGGHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhChhhHHHHHHHHHHHHhh--------------------cccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccC
Confidence            34556677777777777777664                    667777777777777777 667777777777777777


Q ss_pred             HHHHHHHHHHHhcCCCCCcc
Q psy9159         228 YAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       228 ~~eA~~~~~kal~l~p~~~~  247 (259)
                      +++|++.|+++++++|++.+
T Consensus       127 ~~~A~~~~~~al~l~p~n~~  146 (169)
T d1ihga1         127 YDQALADLKKAQEIAPEDKA  146 (169)
T ss_dssp             HHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHhCCCCHH
Confidence            77777777777777777654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.53  E-value=5.2e-14  Score=100.96  Aligned_cols=95  Identities=13%  Similarity=0.053  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHH
Q psy9159          66 DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQ  145 (259)
Q Consensus        66 ~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~  145 (259)
                      +.++.+|.++...|++.              +|+..+++++.++|+++.+|.++|.++...+++.          .|...
T Consensus        17 ~~~~~~g~~~~~~g~~~--------------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~----------~A~~~   72 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLA--------------EAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG----------LAIIA   72 (112)
T ss_dssp             SCHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH----------HHHHH
T ss_pred             HHHHHHHHHHHHHhhhH--------------HHHHHHhhhcccccccchhhhhhhhhhhhhhhHH----------Hhhcc
Confidence            34578899999999875              9999999999999999999999999999999887          57799


Q ss_pred             HHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159         146 MNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE  204 (259)
Q Consensus       146 ~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi  204 (259)
                      ++++++++|+++.+|+.+|.+|...                    |++++|++++++.+
T Consensus        73 ~~~al~~~p~~~~a~~~la~~y~~~--------------------g~~~~A~~~l~~~l  111 (112)
T d1hxia_          73 LNHARMLDPKDIAVHAALAVSHTNE--------------------HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHH
T ss_pred             cccccccccccccchHHHHHHHHHC--------------------CCHHHHHHHHHHHh
Confidence            9999999999999999999999886                    67999999999976

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=4.5e-14  Score=117.73  Aligned_cols=174  Identities=10%  Similarity=-0.027  Sum_probs=127.4

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcC------CCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHH
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQ------PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAK  103 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~  103 (259)
                      +.+.++..+++ .. |++++|++.|++++...      |.....+..+|.+|..+|++.              +|++.++
T Consensus        38 ~~y~~aa~~y~-~~-~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~--------------~A~~~~~  101 (290)
T d1qqea_          38 DLCVQAATIYR-LR-KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV--------------NAVDSLE  101 (290)
T ss_dssp             HHHHHHHHHHH-HT-TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHH
T ss_pred             HHHHHHHHHHH-HC-cCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcH--------------HHHHHHH
Confidence            45666667774 55 99999999999998863      333567888899999888865              8999999


Q ss_pred             HHHHhCCCC------hHHHHHHHHHHHH-hhchhhHHHHHhcHHHHHHHHHHHHccCCCC------hhHHHHHHHHHHHh
Q psy9159         104 KAMELAPNN------SNTQKWYGICVGA-NGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD------FTLYSLKGRYQYEI  170 (259)
Q Consensus       104 kal~~~P~~------~~~~~~la~~~~~-~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~------~~~~~~lG~~~~~~  170 (259)
                      +++++.+++      ..++..+|.++.. .+++.          .+.+.+++|+++.+.+      ..++..+|.++...
T Consensus       102 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~  171 (290)
T d1qqea_         102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYA----------KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD  171 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHH----------HHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHc
Confidence            999988776      3444555554432 35554          5678888888875443      34577788877764


Q ss_pred             hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcH------HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159         171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWK------ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV  244 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~------~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~  244 (259)
                                          |+|++|+.+|++++...|+...      ..+..+|.++...|++..|.+.++++++++|.
T Consensus       172 --------------------g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~  231 (290)
T d1qqea_         172 --------------------GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN  231 (290)
T ss_dssp             --------------------TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred             --------------------ChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence                                8899999999999999883321      34678899999999999999999999999998


Q ss_pred             Cccch
Q psy9159         245 SYESH  249 (259)
Q Consensus       245 ~~~~~  249 (259)
                      .++.+
T Consensus       232 ~~~sr  236 (290)
T d1qqea_         232 FADSR  236 (290)
T ss_dssp             -----
T ss_pred             ccchH
Confidence            77654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.4e-13  Score=116.47  Aligned_cols=133  Identities=11%  Similarity=0.032  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccch
Q psy9159          96 LQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF  175 (259)
Q Consensus        96 ~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~  175 (259)
                      ++|++.++++|+++|+++.+|...+.++..++.........+...+++..++++++.+|+++.+|+.+|.++...+    
T Consensus        46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~----  121 (334)
T d1dcea1          46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP----  121 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS----
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhc----
Confidence            5999999999999999999999999988888777666666666678899999999999999999999998876643    


Q ss_pred             HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhH-HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         176 FERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQ-LLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       176 ~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~-~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                                    .+++++|+.+++++++++| .+..++ ..+|.++...|++++|+++++++++++|.+.+
T Consensus       122 --------------~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~  179 (334)
T d1dcea1         122 --------------EPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS  179 (334)
T ss_dssp             --------------SCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH
T ss_pred             --------------cccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHH
Confidence                          2678999999999999999 666665 56788999999999999999999999988765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.51  E-value=4.5e-13  Score=102.86  Aligned_cols=120  Identities=15%  Similarity=0.063  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHhhch
Q psy9159          65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS---------------NTQKWYGICVGANGQF  129 (259)
Q Consensus        65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~---------------~~~~~la~~~~~~~~~  129 (259)
                      ++.+...|..++..|++.              +|+..|++|+..-|...               .++.++|.|+..++++
T Consensus        15 a~~~~e~G~~~~~~~~~~--------------~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYV--------------QAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            455667888889888875              88889988887655533               2344456666666655


Q ss_pred             hhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC
Q psy9159         130 QSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA  209 (259)
Q Consensus       130 ~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~  209 (259)
                      .          +++..++++|+++|+++.+|+.+|.++..+                    |++++|+.+|+++++++| 
T Consensus        81 ~----------~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l--------------------~~~~~A~~~~~~al~l~P-  129 (168)
T d1kt1a1          81 T----------KAVECCDKALGLDSANEKGLYRRGEAQLLM--------------------NEFESAKGDFEKVLEVNP-  129 (168)
T ss_dssp             H----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHSCT-
T ss_pred             c----------cchhhhhhhhhcccchHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCC-
Confidence            5          456677777777777777777777776664                    667777777777777777 


Q ss_pred             CcHHhHHHHHHHHHHhCCHH
Q psy9159         210 PWKENQLLIAKCYIEAGEYA  229 (259)
Q Consensus       210 ~~~~~~~~la~~~~~~g~~~  229 (259)
                      ++..+...++.+....++..
T Consensus       130 ~n~~~~~~l~~~~~~~~~~~  149 (168)
T d1kt1a1         130 QNKAARLQIFMCQKKAKEHN  149 (168)
T ss_dssp             TCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhHH
Confidence            56666777777766665444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.9e-13  Score=100.35  Aligned_cols=114  Identities=19%  Similarity=0.103  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHH
Q psy9159          66 DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQ  145 (259)
Q Consensus        66 ~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~  145 (259)
                      ..+..+|..++..|++.              +|+..|+++|+++|+++.++..+|.++...|++.          .|+..
T Consensus         5 ~~~k~~G~~~~~~~~y~--------------~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~----------~A~~~   60 (128)
T d1elra_           5 LKEKELGNDAYKKKDFD--------------TALKHYDKAKELDPTNMTYITNQAAVYFEKGDYN----------KCREL   60 (128)
T ss_dssp             HHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH----------HHHHH
T ss_pred             HHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchH----------HHHHH
Confidence            34557889999988875              9999999999999999999999999999999998          56799


Q ss_pred             HHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHH
Q psy9159         146 MNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI  218 (259)
Q Consensus       146 ~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~l  218 (259)
                      +++||+++|+++.+|..+|.+|..+|....   .          .+++++|+.+|++++..+| + ......+
T Consensus        61 ~~~al~l~~~~~~~~~~~a~~~~~lg~~~~---~----------~~~~~~A~~~~~kal~~~~-~-~~~~~~l  118 (128)
T d1elra_          61 CEKAIEVGRENREDYRQIAKAYARIGNSYF---K----------EEKYKDAIHFYNKSLAEHR-T-PDVLKKC  118 (128)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHHH---H----------TTCHHHHHHHHHHHHHHCC-C-HHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHHHHHHH---H----------hCCHHHHHHHHHHHHhcCC-C-HHHHHHH
Confidence            999999999999999999988887765211   0          3889999999999999998 4 4444333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.3e-14  Score=102.29  Aligned_cols=101  Identities=18%  Similarity=0.218  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcH
Q psy9159         114 NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTA  193 (259)
Q Consensus       114 ~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  193 (259)
                      ..+..+|..+...|++.          +|+.+|+++|+++|+++.++..+|.+|..+                    |++
T Consensus         5 ~~~k~~G~~~~~~~~y~----------~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~--------------------~~~   54 (128)
T d1elra_           5 LKEKELGNDAYKKKDFD----------TALKHYDKAKELDPTNMTYITNQAAVYFEK--------------------GDY   54 (128)
T ss_dssp             HHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------------TCH
T ss_pred             HHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCcccHHHHHhHHHHHHHc--------------------Cch
Confidence            34567888898888887          678999999999999999999999999986                    889


Q ss_pred             HHHHHHHHHHHhhCCCCcH-------HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159         194 EDAIANCLKAEELAPAPWK-------ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       194 ~eAi~~~~kAi~l~P~~~~-------~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~  245 (259)
                      ++|+.++++|++++| .+.       .++..+|.++..++++++|+++|++++..+|+.
T Consensus        55 ~~A~~~~~~al~l~~-~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~  112 (128)
T d1elra_          55 NKCRELCEKAIEVGR-ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP  112 (128)
T ss_dssp             HHHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence            999999999999998 444       356778888999999999999999999987653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.9e-13  Score=104.23  Aligned_cols=112  Identities=19%  Similarity=0.121  Sum_probs=98.5

Q ss_pred             hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCC---------------HHHHHHHHHHHHHhhchhcccCcHHHHHHHHH
Q psy9159          32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND---------------PDVLYRLAKACHCLYDIKRRENDKEASEKYIL   96 (259)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~   96 (259)
                      -..|..++  .. |+|++|+..|++++...|..               ..++.++|.+|..+|++.              
T Consensus        17 ~~~G~~~~--~~-~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~--------------   79 (170)
T d1p5qa1          17 KERGTVYF--KE-GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFS--------------   79 (170)
T ss_dssp             HHHHHHHH--HH-TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHH--------------
T ss_pred             HHHHHHHH--Hc-CCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcc--------------
Confidence            35666777  56 99999999999999987755               356677899999988875              


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159          97 QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI  170 (259)
Q Consensus        97 ~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~  170 (259)
                      +|+..++++|+++|+++.+++++|.++..+|++.          .|...|+++++++|+|+.+...++.+....
T Consensus        80 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~----------~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          80 AAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE----------LARADFQKVLQLYPNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhccccchhhhHHHHHHHHHhhhHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987          578999999999999999999999887654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.49  E-value=2.8e-13  Score=102.51  Aligned_cols=114  Identities=15%  Similarity=0.121  Sum_probs=98.9

Q ss_pred             CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH----------------HHHHHHHHHHHHhhchhcccCcHHHHHH
Q psy9159          30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP----------------DVLYRLAKACHCLYDIKRRENDKEASEK   93 (259)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------~~~~~la~~~~~~g~~~~~~~~~~~~~~   93 (259)
                      ..-++|..+|  .. |+|.+|+..|++++...|...                .++.++|.+|..+|++.           
T Consensus        19 ~~~~~G~~~f--~~-~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~-----------   84 (153)
T d2fbna1          19 DIKEEGNEFF--KK-NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYP-----------   84 (153)
T ss_dssp             HHHHHHHHHH--HT-TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-----------
T ss_pred             HHHHHHHHHH--Hc-CCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccc-----------
Confidence            3456788888  67 999999999999998665332                46778999999999875           


Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159          94 YILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI  170 (259)
Q Consensus        94 ~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~  170 (259)
                         +|+..++++|+++|+++.+|+++|.++..+|++.          .|...++++++++|+|..+...++.+..++
T Consensus        85 ---~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~----------~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          85 ---KAIDHASKVLKIDKNNVKALYKLGVANMYFGFLE----------EAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             ---HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             ---hhhhhhhccccccchhhhhhHHhHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence               9999999999999999999999999999999987          577999999999999999999998876543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.47  E-value=6.2e-13  Score=100.53  Aligned_cols=121  Identities=12%  Similarity=0.023  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHH
Q psy9159          67 VLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQM  146 (259)
Q Consensus        67 ~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~  146 (259)
                      .+...|..++..|++.              +|+..|++|+.+-|.....-             ..          .....
T Consensus        19 ~~~~~G~~~f~~~~y~--------------~A~~~Y~~al~~~~~~~~~~-------------~~----------~~~~~   61 (153)
T d2fbna1          19 DIKEEGNEFFKKNEIN--------------EAIVKYKEALDFFIHTEEWD-------------DQ----------ILLDK   61 (153)
T ss_dssp             HHHHHHHHHHHTTCHH--------------HHHHHHHHHHHTTTTCTTCC-------------CH----------HHHHH
T ss_pred             HHHHHHHHHHHcCCHH--------------HHHHHHHHHHhhCcchhhhh-------------hH----------HHHHh
Confidence            3444666777777764              99999999998877643210             00          00011


Q ss_pred             HHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhC
Q psy9159         147 NKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAG  226 (259)
Q Consensus       147 ~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g  226 (259)
                      .+.+.     ..++.++|.+|+++                    |++++|++++++|++++| .+..+|+.+|.+|..+|
T Consensus        62 ~~~~~-----~~~~~Nla~~~~~l--------------------~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg  115 (153)
T d2fbna1          62 KKNIE-----ISCNLNLATCYNKN--------------------KDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFG  115 (153)
T ss_dssp             HHHHH-----HHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred             hhhHH-----HHHHhhHHHHHHHh--------------------cccchhhhhhhccccccc-hhhhhhHHhHHHHHHcC
Confidence            11111     24677899888875                    778999999999999999 77899999999999999


Q ss_pred             CHHHHHHHHHHHhcCCCCCccchh
Q psy9159         227 EYAKAVQWLDKAKAIPVVSYESHD  250 (259)
Q Consensus       227 ~~~eA~~~~~kal~l~p~~~~~~~  250 (259)
                      ++++|+..|+++++++|+|.+-..
T Consensus       116 ~~~~A~~~~~~al~l~P~n~~~~~  139 (153)
T d2fbna1         116 FLEEAKENLYKAASLNPNNLDIRN  139 (153)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHH
Confidence            999999999999999988776443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5e-15  Score=132.97  Aligned_cols=125  Identities=9%  Similarity=0.001  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159          91 SEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI  170 (259)
Q Consensus        91 ~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~  170 (259)
                      ..+.++.++..+++++.++|++..++..+|.++...++..          .+...+++++.++|.  .++..+|.++...
T Consensus        98 a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~----------~A~~~~~~al~~~~~--~~~~~LG~l~~~~  165 (497)
T d1ya0a1          98 ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTS----------AIVKPQSSSCSYICQ--HCLVHLGDIARYR  165 (497)
T ss_dssp             HHHHHHHHHHHHTC-----------------------------------------CCHHHHHHHH--HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHH----------HHHHHHHHHhCCCHH--HHHHHHHHHHHHc
Confidence            3556677777777777888888888888888887777665          344556677766663  5677788877663


Q ss_pred             hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159         171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES  248 (259)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~  248 (259)
                                          |++++|+.+|++|++++| ++...|.+||.++...|+..+|+.+|.||+.++|..+..
T Consensus       166 --------------------~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a  222 (497)
T d1ya0a1         166 --------------------NQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA  222 (497)
T ss_dssp             --------------------TCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHH
T ss_pred             --------------------ccHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHH
Confidence                                889999999999999999 889999999999999999999999999999999877653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.46  E-value=7.9e-13  Score=101.44  Aligned_cols=116  Identities=12%  Similarity=0.032  Sum_probs=99.8

Q ss_pred             CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCC---------------HHHHHHHHHHHHHhhchhcccCcHHHHHH
Q psy9159          29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND---------------PDVLYRLAKACHCLYDIKRRENDKEASEK   93 (259)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~la~~~~~~g~~~~~~~~~~~~~~   93 (259)
                      +...+.|..++  .. |+|.+|+..|++++...|..               ..++.++|.+|..+|++.           
T Consensus        16 ~~~~e~G~~~~--~~-~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~-----------   81 (168)
T d1kt1a1          16 AIVKEKGTVYF--KG-GKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT-----------   81 (168)
T ss_dssp             HHHHHHHHHHH--HT-TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-----------
T ss_pred             HHHHHHHHHHH--Hc-CCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcc-----------
Confidence            34567888899  67 99999999999998754332               345677899999998875           


Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhh
Q psy9159          94 YILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEIS  171 (259)
Q Consensus        94 ~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~  171 (259)
                         +|+..++++++++|+++.+++++|.++..+|++.          .|...++++++++|+++.++..++.+...+.
T Consensus        82 ---~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~----------~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  146 (168)
T d1kt1a1          82 ---KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFE----------SAKGDFEKVLEVNPQNKAARLQIFMCQKKAK  146 (168)
T ss_dssp             ---HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             ---cchhhhhhhhhcccchHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence               9999999999999999999999999999999987          5778999999999999999999998876553

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=3.4e-13  Score=103.49  Aligned_cols=113  Identities=12%  Similarity=0.104  Sum_probs=99.6

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhh----------------cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHH
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNN----------------KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKY   94 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~----------------~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~   94 (259)
                      ....+..++  .. |+|++|+..|.++++                .+|..+.++.++|.+|..+|++.            
T Consensus        30 ~~~~~~~~~--~~-~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~------------   94 (169)
T d1ihga1          30 LKNIGNTFF--KS-QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQ------------   94 (169)
T ss_dssp             HHHHHHHHH--HT-TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHH------------
T ss_pred             HHHHHHHHH--Hc-CCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccc------------
Confidence            345576777  56 999999999999875                35778888999999999999875            


Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159          95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI  170 (259)
Q Consensus        95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~  170 (259)
                        +|+..+.++|+++|+++.+|+++|.++..+|++.          .|+..|+++++++|++..++..++.+...+
T Consensus        95 --~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~----------~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1          95 --GAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD----------QALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             --HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             --hhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence              9999999999999999999999999999999987          578999999999999999999999877554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=1.3e-12  Score=108.70  Aligned_cols=148  Identities=16%  Similarity=0.024  Sum_probs=113.5

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA------PNNSNTQKW  118 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~------P~~~~~~~~  118 (259)
                      ++|++|.+.|.+              .|.+|...+++.              +|++.|++|+++.      |+-+.++..
T Consensus        31 ~~~~~Aa~~y~~--------------aa~~y~~~~~~~--------------~A~~~y~kA~~~~~~~~~~~~~a~~~~~   82 (290)
T d1qqea_          31 YKFEEAADLCVQ--------------AATIYRLRKELN--------------LAGDSFLKAADYQKKAGNEDEAGNTYVE   82 (290)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHHTTCTH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHH--------------HHHHHHHCcCHH--------------HHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            356777666555              477888888875              8999999998873      333456788


Q ss_pred             HHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC------hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCc
Q psy9159         119 YGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD------FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPT  192 (259)
Q Consensus       119 la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~------~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~  192 (259)
                      +|.++...|++.          .+.+.+++++++.++.      ..++..+|.++...                   .|+
T Consensus        83 ~g~~y~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~  133 (290)
T d1qqea_          83 AYKCFKSGGNSV----------NAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND-------------------LHD  133 (290)
T ss_dssp             HHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------------------TCC
T ss_pred             HHHHHHHhCCcH----------HHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhH-------------------HHH
Confidence            888888888877          4678888888887766      34566677665432                   388


Q ss_pred             HHHHHHHHHHHHhhCCCC-----cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159         193 AEDAIANCLKAEELAPAP-----WKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       193 ~~eAi~~~~kAi~l~P~~-----~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~  249 (259)
                      +++|+.+|++|+++.+..     ...++.++|.++..+|++++|++.|++++.+.|.++...
T Consensus       134 ~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~  195 (290)
T d1qqea_         134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhh
Confidence            999999999999884311     245589999999999999999999999999998876543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=3.5e-11  Score=100.56  Aligned_cols=160  Identities=13%  Similarity=-0.070  Sum_probs=102.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHH-HHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPD-VLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV  123 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~  123 (259)
                      |++++|...|+++++..|.++. +|...+......|+.              ++|++.++++++..|.+...+...+...
T Consensus       113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~--------------~~ar~i~~~al~~~~~~~~~~~~~a~~e  178 (308)
T d2onda1         113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI--------------KSGRMIFKKAREDARTRHHVYVTAALME  178 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCH--------------HHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCh--------------HHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            4455555555555555444432 344444444444333              3666666666666666666655555443


Q ss_pred             HH-hhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q psy9159         124 GA-NGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLK  202 (259)
Q Consensus       124 ~~-~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~k  202 (259)
                      .. .++..          .+...++++++.+|+++..|..++.++..                    .|+++.|...|++
T Consensus       179 ~~~~~~~~----------~a~~i~e~~l~~~p~~~~~w~~y~~~~~~--------------------~g~~~~aR~~fe~  228 (308)
T d2onda1         179 YYCSKDKS----------VAFKIFELGLKKYGDIPEYVLAYIDYLSH--------------------LNEDNNTRVLFER  228 (308)
T ss_dssp             HHTSCCHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------------------TCCHHHHHHHHHH
T ss_pred             HHhccCHH----------HHHHHHHHHHHhhhhhHHHHHHHHHHHHH--------------------cCChHHHHHHHHH
Confidence            22 22222          34566677777777777777666665544                    3889999999999


Q ss_pred             HHhhCCCCcH----HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159         203 AEELAPAPWK----ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       203 Ai~l~P~~~~----~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~  249 (259)
                      |+...| .++    ..|......-...|+.+.+.+.++++.++.|...+.+
T Consensus       229 ai~~~~-~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~~  278 (308)
T d2onda1         229 VLTSGS-LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGK  278 (308)
T ss_dssp             HHHSSS-SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSC
T ss_pred             HHHhCC-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccccc
Confidence            999776 333    3577777777888999999999999999998876544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.4e-11  Score=102.21  Aligned_cols=193  Identities=13%  Similarity=0.052  Sum_probs=122.0

Q ss_pred             hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH
Q psy9159          33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP-----DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME  107 (259)
Q Consensus        33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~  107 (259)
                      .++..++  .. |++++|+..+++++...|+++     .++..+|.+|...|++.              +|+..++++++
T Consensus        17 lrA~~~~--~~-g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~--------------~A~~~~~~a~~   79 (366)
T d1hz4a_          17 LRAQVAI--ND-GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELT--------------RSLALMQQTEQ   79 (366)
T ss_dssp             HHHHHHH--HT-TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHH
T ss_pred             HHHHHHH--HC-CCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHH
Confidence            4465566  56 999999999999999999874     47888999999999875              99999999998


Q ss_pred             hCCCCh------HHHHHHHHHHHHhhchhhHHHHH--------------------------------hcHHHHHHHHHHH
Q psy9159         108 LAPNNS------NTQKWYGICVGANGQFQSLKEKI--------------------------------KCGVVFRDQMNKA  149 (259)
Q Consensus       108 ~~P~~~------~~~~~la~~~~~~~~~~~~~~~~--------------------------------~~~~~a~~~~~kA  149 (259)
                      +.|...      .++..++.++...+++..+....                                +....+...+.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~  159 (366)
T d1hz4a_          80 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG  159 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Confidence            776543      33455566666666654432211                                1112344556666


Q ss_pred             HccCCCCh-----hHHHHHHHHHHHhhccchH----HHHH--------------------HHH------------Hh---
Q psy9159         150 IQMAPKDF-----TLYSLKGRYQYEISKLSFF----ERKI--------------------AVL------------IV---  185 (259)
Q Consensus       150 l~l~P~~~-----~~~~~lG~~~~~~~~~~~~----~~~~--------------------~~~------------~~---  185 (259)
                      +...+...     .++..+|.++...+.....    .+..                    +..            .+   
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  239 (366)
T d1hz4a_         160 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT  239 (366)
T ss_dssp             HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            66655433     2333444433332221100    0000                    000            00   


Q ss_pred             --cC------------------CCCCcHHHHHHHHHHHHhh------CCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159         186 --SD------------------LDEPTAEDAIANCLKAEEL------APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK  239 (259)
Q Consensus       186 --~~------------------~~~g~~~eAi~~~~kAi~l------~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal  239 (259)
                        ..                  ...|++++|+.++++++.+      .| +...++..+|.+|..+|++++|++.+++|+
T Consensus       240 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         240 AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS-DLNRNLLLLNQLYWQAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             CCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence              00                  0158888888888888753      34 445678888888888888888888888888


Q ss_pred             cCCC
Q psy9159         240 AIPV  243 (259)
Q Consensus       240 ~l~p  243 (259)
                      ++.+
T Consensus       319 ~l~~  322 (366)
T d1hz4a_         319 KLAN  322 (366)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            8654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.4e-12  Score=116.76  Aligned_cols=136  Identities=10%  Similarity=-0.059  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      +.|+.|+..+.++...+|++..++..+|.++...|+..              +|...+++++..+|.  .++..+|.++.
T Consensus       100 ~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~--------------~A~~~~~~al~~~~~--~~~~~LG~l~~  163 (497)
T d1ya0a1         100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTS--------------AIVKPQSSSCSYICQ--HCLVHLGDIAR  163 (497)
T ss_dssp             HHHHHHHHHHTC---------------------------------------------CCHHHHHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHH--------------HHHHHHHHHhCCCHH--HHHHHHHHHHH
Confidence            77888888899999999999999999999999888765              888889999988874  57788999998


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE  204 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi  204 (259)
                      ..+++.          +|..+|++|++++|+++.+|+.||.++...                    |++.+|+.+|.+|+
T Consensus       164 ~~~~~~----------~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~--------------------~~~~~A~~~y~ral  213 (497)
T d1ya0a1         164 YRNQTS----------QAESYYRHAAQLVPSNGQPYNQLAILASSK--------------------GDHLTTIFYYCRSI  213 (497)
T ss_dssp             HTTCHH----------HHHHHHHHHHHHCTTBSHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHH
T ss_pred             HcccHH----------HHHHHHHHHHHHCCCchHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHH
Confidence            888876          578999999999999999999999998874                    88999999999999


Q ss_pred             hhCCCCcHHhHHHHHHHHHHhCC
Q psy9159         205 ELAPAPWKENQLLIAKCYIEAGE  227 (259)
Q Consensus       205 ~l~P~~~~~~~~~la~~~~~~g~  227 (259)
                      .++| ..+.++.+|+.++....+
T Consensus       214 ~~~~-~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         214 AVKF-PFPAASTNLQKALSKALE  235 (497)
T ss_dssp             SSSB-CCHHHHHHHHHHHHHHTT
T ss_pred             hCCC-CCHHHHHHHHHHHHHhhh
Confidence            9999 789999999998876543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.23  E-value=8e-12  Score=94.43  Aligned_cols=106  Identities=10%  Similarity=-0.022  Sum_probs=82.2

Q ss_pred             HHHHHH--HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh------------hHHHHHHHHHHHhhccchHHHH
Q psy9159         114 NTQKWY--GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF------------TLYSLKGRYQYEISKLSFFERK  179 (259)
Q Consensus       114 ~~~~~l--a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~------------~~~~~lG~~~~~~~~~~~~~~~  179 (259)
                      .++..+  |..+...|++.          +|+..|++||+++|+.+            .+|.++|.+|..+         
T Consensus         8 ~a~~~l~~g~~~~~~g~y~----------~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~l---------   68 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYD----------EAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL---------   68 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT---------
T ss_pred             HHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHc---------
Confidence            444444  44455556666          67899999999999865            4677888888774         


Q ss_pred             HHHHHhcCCCCCcHHHHHHHHHHHHhhCCC------C----cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159         180 IAVLIVSDLDEPTAEDAIANCLKAEELAPA------P----WKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH  249 (259)
Q Consensus       180 ~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~------~----~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~  249 (259)
                                 |++++|+.++++++++.|.      .    ...+++++|.+|..+|++++|++.|++|+++.|...+..
T Consensus        69 -----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~  137 (156)
T d2hr2a1          69 -----------RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET  137 (156)
T ss_dssp             -----------TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             -----------CccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchH
Confidence                       8899999999999987531      1    133688999999999999999999999999988766543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.8e-10  Score=79.52  Aligned_cols=81  Identities=11%  Similarity=0.133  Sum_probs=70.7

Q ss_pred             CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHhhchhhHHHHH
Q psy9159          64 DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN-------SNTQKWYGICVGANGQFQSLKEKI  136 (259)
Q Consensus        64 ~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~-------~~~~~~la~~~~~~~~~~~~~~~~  136 (259)
                      +++-.+.+|.+++..|++.              +|+.++++|+++.|++       +.++.++|.++...|++.      
T Consensus         4 saddc~~lG~~~~~~g~y~--------------~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~------   63 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYY--------------HTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLD------   63 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHH------
T ss_pred             cHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChH------
Confidence            3567789999999999976              9999999999997765       567889999999999987      


Q ss_pred             hcHHHHHHHHHHHHccCCCChhHHHHHHHHHH
Q psy9159         137 KCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQY  168 (259)
Q Consensus       137 ~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~  168 (259)
                          +|+..++++|+++|+++.++.+++.+..
T Consensus        64 ----~A~~~y~~aL~l~P~~~~a~~Nl~~~~~   91 (95)
T d1tjca_          64 ----KALLLTKKLLELDPEHQRANGNLKYFEY   91 (95)
T ss_dssp             ----HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence                5789999999999999999999987543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.13  E-value=1.1e-10  Score=88.02  Aligned_cols=91  Identities=9%  Similarity=0.022  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh----h
Q psy9159          95 ILQGIEYAKKAMELAPNNS------------NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF----T  158 (259)
Q Consensus        95 ~~~A~~~~~kal~~~P~~~------------~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~----~  158 (259)
                      +++|+..|++||++.|+.+            .+|.++|.++..+|++..+....   ..++..+.+....+|+..    .
T Consensus        25 y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~---~~al~~~~~~~~~~~~~~~~~~~  101 (156)
T d2hr2a1          25 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSA---DKALHYFNRRGELNQDEGKLWIS  101 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH---HHHHHHHHHHCCTTSTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhh---hhhhhcccccccccccccchhHH
Confidence            3599999999999999865            46788999999999887443221   123333344444444433    3


Q ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC
Q psy9159         159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP  208 (259)
Q Consensus       159 ~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P  208 (259)
                      +++.+|.+|..+                    |++++|+.+|++|+++.|
T Consensus       102 a~~~~g~~~~~l--------------------g~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1         102 AVYSRALALDGL--------------------GRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHH--------------------HHHHHHHHHHHHHHHhhH
Confidence            678889988875                    889999999999999976

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.11  E-value=1.2e-10  Score=95.60  Aligned_cols=131  Identities=14%  Similarity=0.052  Sum_probs=103.1

Q ss_pred             HHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChH
Q psy9159          35 IDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSN  114 (259)
Q Consensus        35 ~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~  114 (259)
                      +...+  .. |++++|+..++++++.+|++++++..+|.+++..|++.              +|+..++++++++|++..
T Consensus         3 ~~~aL--~~-G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e--------------~A~~~l~~a~~l~P~~~~   65 (264)
T d1zbpa1           3 WKNAL--SE-GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFE--------------RADEQLMQSIKLFPEYLP   65 (264)
T ss_dssp             HHHHT--TT-TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHH--------------HHHHHHHHHHHHCGGGHH
T ss_pred             HHHHH--HC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCCCcHH
Confidence            44566  67 99999999999999999999999999999999999975              999999999999999999


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHH-HHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcH
Q psy9159         115 TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNK-AIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTA  193 (259)
Q Consensus       115 ~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~k-Al~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  193 (259)
                      ++..++.++...+....+          .....+ ++..+|.++..+...+..+...                    |++
T Consensus        66 ~~~~l~~ll~a~~~~~~a----------~~~~~~~~~~~~p~~~~~~l~~a~~~~~~--------------------gd~  115 (264)
T d1zbpa1          66 GASQLRHLVKAAQARKDF----------AQGAATAKVLGENEELTKSLVSFNLSMVS--------------------QDY  115 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHH----------TTSCCCEECCCSCHHHHHHHHHHHHHHHH--------------------TCH
T ss_pred             HHHHHHHHHHhccccHHH----------HHHhhhhhcccCchHHHHHHHHHHHHHhC--------------------CCH
Confidence            998888877655433211          111112 2234566666677777766654                    889


Q ss_pred             HHHHHHHHHHHhhCCCCcHH
Q psy9159         194 EDAIANCLKAEELAPAPWKE  213 (259)
Q Consensus       194 ~eAi~~~~kAi~l~P~~~~~  213 (259)
                      ++|++.+.++.++.| ....
T Consensus       116 ~~A~~~~~~a~e~~p-~~~~  134 (264)
T d1zbpa1         116 EQVSELALQIEELRQ-EKGF  134 (264)
T ss_dssp             HHHHHHHHHHHHHCC-CCCE
T ss_pred             HHHHHHHHHHHhcCC-CCCc
Confidence            999999999999999 5443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.2e-10  Score=79.10  Aligned_cols=83  Identities=11%  Similarity=0.030  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC-------hhHHHHHHHHHHHhhccchHHHHHHHHHh
Q psy9159         113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD-------FTLYSLKGRYQYEISKLSFFERKIAVLIV  185 (259)
Q Consensus       113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~-------~~~~~~lG~~~~~~~~~~~~~~~~~~~~~  185 (259)
                      ++.++.+|.++...|++.          .|+..+++|+++.|.+       +.++..||.++++.               
T Consensus         5 addc~~lG~~~~~~g~y~----------~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~---------------   59 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYY----------HTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ---------------   59 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT---------------
T ss_pred             HHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhc---------------
Confidence            456789999999999988          5678889999887765       46788899988875               


Q ss_pred             cCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhC
Q psy9159         186 SDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAG  226 (259)
Q Consensus       186 ~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g  226 (259)
                           |++++|+++|+++++++| ++..++.+++.+...++
T Consensus        60 -----g~~~~A~~~y~~aL~l~P-~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          60 -----GDLDKALLLTKKLLELDP-EHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             -----TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred             -----CChHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence                 889999999999999999 77999999988776553

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.07  E-value=9.9e-11  Score=96.12  Aligned_cols=123  Identities=12%  Similarity=0.116  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhcc
Q psy9159          94 YILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKL  173 (259)
Q Consensus        94 ~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~  173 (259)
                      .+++|++.++++|+.+|+|+.++..++.++...|+++          +|...++++++++|++..++..+|.++...   
T Consensus        11 ~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e----------~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~---   77 (264)
T d1zbpa1          11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFE----------RADEQLMQSIKLFPEYLPGASQLRHLVKAA---   77 (264)
T ss_dssp             CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCGGGHHHHHHHHHHHHHH---
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHhc---
Confidence            3569999999999999999999999999999999998          567899999999999999999999876543   


Q ss_pred             chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh-CCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL-APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l-~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                                       +..+++...+.+...+ +| +....+...+.++...|+.++|++.++++.++.|..+.
T Consensus        78 -----------------~~~~~a~~~~~~~~~~~~p-~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1          78 -----------------QARKDFAQGAATAKVLGEN-EELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             -----------------HHHHHHTTSCCCEECCCSC-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             -----------------cccHHHHHHhhhhhcccCc-hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence                             3345555544443333 45 44566778899999999999999999999999998875

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.02  E-value=1.5e-08  Score=81.97  Aligned_cols=197  Identities=11%  Similarity=-0.008  Sum_probs=112.5

Q ss_pred             chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-------------cCcHH--HH----
Q psy9159          31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-------------ENDKE--AS----   91 (259)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-------------~~~~~--~~----   91 (259)
                      .+..+..++  .. +++++|+..|+++.+.  .++++.+.||.+|.........             .....  ..    
T Consensus         5 ~~~lG~~~~--~~-~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~   79 (265)
T d1ouva_           5 LVGLGAKSY--KE-KDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNL   79 (265)
T ss_dssp             HHHHHHHHH--HT-TCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHH--HC-CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccc
Confidence            344555666  56 9999999999999764  6899999999999874322210             00000  00    


Q ss_pred             -------HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHH
Q psy9159          92 -------EKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKG  164 (259)
Q Consensus        92 -------~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG  164 (259)
                             ....+.|...++++.+..+  ..+..+++..+........      ....+...+.+.  .++.++..++.||
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~------~~~~a~~~~~~~--~~~~~~~~~~~L~  149 (265)
T d1ouva_          80 YYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTR------DFKKAVEYFTKA--CDLNDGDGCTILG  149 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCC------CHHHHHHHHHHH--HHTTCHHHHHHHH
T ss_pred             cccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccc------hhHHHHHHhhhh--hcccccchhhhhh
Confidence                   0112444444444444332  2223333333322111000      001122333332  4456666777777


Q ss_pred             HHHHHhhcc--------chHHHHH-----------HHH-HhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHH
Q psy9159         165 RYQYEISKL--------SFFERKI-----------AVL-IVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIE  224 (259)
Q Consensus       165 ~~~~~~~~~--------~~~~~~~-----------~~~-~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~  224 (259)
                      .++......        .|+.++.           +.. ..+.....++++|+.+|++|.+...   +.++++||.+|..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~---~~a~~~LG~~y~~  226 (265)
T d1ouva_         150 SLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYN  226 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHT
T ss_pred             hhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccC---HHHHHHHHHHHHc
Confidence            766542111        0111111           111 1123346789999999999999853   7889999999986


Q ss_pred             ----hCCHHHHHHHHHHHhcCCCCC
Q psy9159         225 ----AGEYAKAVQWLDKAKAIPVVS  245 (259)
Q Consensus       225 ----~g~~~eA~~~~~kal~l~p~~  245 (259)
                          .+++++|+++|++|.+..+.+
T Consensus       227 G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         227 GEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             TSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             CCCCccCHHHHHHHHHHHHHCcCHH
Confidence                458999999999999887544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.98  E-value=2.8e-09  Score=82.19  Aligned_cols=122  Identities=11%  Similarity=-0.069  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHH
Q psy9159          66 DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQ  145 (259)
Q Consensus        66 ~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~  145 (259)
                      +.+...|......|+..              +|.+.|.+|+++.|++....         ......             .
T Consensus        12 ~~~~~~g~~~~~~g~~e--------------~A~~~~~~AL~l~rG~~l~~---------~~~~~w-------------~   55 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFE--------------QASRHLSAALREWRGPVLDD---------LRDFQF-------------V   55 (179)
T ss_dssp             HHHHHHHHHHHHTTCHH--------------HHHHHHHHHHTTCCSSTTGG---------GTTSTT-------------H
T ss_pred             HHHHHHHHHHHHCCCHH--------------HHHHHHHHHHhhCccccccc---------CcchHH-------------H
Confidence            55667777777777764              99999999999999875321         111110             1


Q ss_pred             HHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHh
Q psy9159         146 MNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEA  225 (259)
Q Consensus       146 ~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~  225 (259)
                      ......+.|....++..+|.++...                    |++++|+.+++++++++| .+..+|..++.+|..+
T Consensus        56 ~~~r~~l~~~~~~a~~~la~~~~~~--------------------g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~  114 (179)
T d2ff4a2          56 EPFATALVEDKVLAHTAKAEAEIAC--------------------GRASAVIAELEALTFEHP-YREPLWTQLITAYYLS  114 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHh
Confidence            1233345555668888999988775                    889999999999999999 7899999999999999


Q ss_pred             CCHHHHHHHHHHH-------hcCCCC
Q psy9159         226 GEYAKAVQWLDKA-------KAIPVV  244 (259)
Q Consensus       226 g~~~eA~~~~~ka-------l~l~p~  244 (259)
                      |++.+|++.|+++       +.++|.
T Consensus       115 Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2         115 DRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            9999999999998       556664

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=3.3e-09  Score=87.48  Aligned_cols=143  Identities=13%  Similarity=-0.040  Sum_probs=103.2

Q ss_pred             CCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHhhchhhHHHH
Q psy9159          61 QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-----NTQKWYGICVGANGQFQSLKEK  135 (259)
Q Consensus        61 ~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~-----~~~~~la~~~~~~~~~~~~~~~  135 (259)
                      ++-.+++....|.++...|++.              +|+..++++++..|++.     .++..+|.++...|++.     
T Consensus         8 ~~~~ae~~~lrA~~~~~~g~~~--------------~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~-----   68 (366)
T d1hz4a_           8 DTMHAEFNALRAQVAINDGNPD--------------EAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELT-----   68 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHH-----
T ss_pred             cchhHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHH-----
Confidence            3445778888899999999875              99999999999999985     46777888888888887     


Q ss_pred             HhcHHHHHHHHHHHHccCCCChh------HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC
Q psy9159         136 IKCGVVFRDQMNKAIQMAPKDFT------LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA  209 (259)
Q Consensus       136 ~~~~~~a~~~~~kAl~l~P~~~~------~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~  209 (259)
                           .|...+++++++.|....      ++..+|.++...                    |++..|+..+.+++.+.+.
T Consensus        69 -----~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~a~~~~~~al~~~~~  123 (366)
T d1hz4a_          69 -----RSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ--------------------GFLQTAWETQEKAFQLINE  123 (366)
T ss_dssp             -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHhHh
Confidence                 567888888887766543      345555555543                    6677777777777765320


Q ss_pred             -----C--cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159         210 -----P--WKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE  247 (259)
Q Consensus       210 -----~--~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~  247 (259)
                           .  ....+..+|.++...|++++|...+++++...+....
T Consensus       124 ~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~  168 (366)
T d1hz4a_         124 QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP  168 (366)
T ss_dssp             TTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh
Confidence                 1  1234566777777778888888888777776665443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.71  E-value=3.4e-07  Score=66.38  Aligned_cols=116  Identities=16%  Similarity=0.036  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhc
Q psy9159          93 KYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISK  172 (259)
Q Consensus        93 ~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~  172 (259)
                      .++++|+.+++++.+..  ++.+.+.++..  ...          +..++...++++.+  ..++.+.+.||.+|..   
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~~--~~~----------~~~~a~~~~~~aa~--~g~~~a~~~Lg~~y~~---   67 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVSN--SQI----------NKQKLFQYLSKACE--LNSGNGCRFLGDFYEN---   67 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHTC--TTS----------CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhccc--ccc----------CHHHHHHHHhhhhc--ccchhhhhhHHHhhhh---
Confidence            46789999999999875  66666665421  111          12356788898865  4789999999998765   


Q ss_pred             cchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHH----hCCHHHHHHHHHHHhcCCC
Q psy9159         173 LSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIE----AGEYAKAVQWLDKAKAIPV  243 (259)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~kal~l~p  243 (259)
                                   +.....++++|+++|+++.+..   ++.+.+.||.+|..    ..+.++|+++|++|.++..
T Consensus        68 -------------g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          68 -------------GKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             -------------CSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             -------------ccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence                         1122367999999999999975   37889999999988    4689999999999998763

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.53  E-value=6.1e-07  Score=68.64  Aligned_cols=108  Identities=6%  Similarity=-0.179  Sum_probs=85.4

Q ss_pred             cCCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH----------------------HHHHHHHHHHHHhhchhccc
Q psy9159          28 NNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP----------------------DVLYRLAKACHCLYDIKRRE   85 (259)
Q Consensus        28 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------------~~~~~la~~~~~~g~~~~~~   85 (259)
                      .+.....+..+.  .. |++++|++.|.+++...|.++                      +++..++.++...|++.   
T Consensus        11 f~~~~~~g~~~~--~~-g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~---   84 (179)
T d2ff4a2          11 FVAEKTAGVHAA--AA-GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS---   84 (179)
T ss_dssp             HHHHHHHHHHHH--HT-TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH---
T ss_pred             HHHHHHHHHHHH--HC-CCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch---
Confidence            345566777887  67 999999999999999876442                      56677777777777765   


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC
Q psy9159          86 NDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK  155 (259)
Q Consensus        86 ~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~  155 (259)
                                 +|+..++++++++|.+..+|..++.++...|+...+...+..+   ...+.+-+-++|.
T Consensus        85 -----------~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~---~~~L~~eLG~~P~  140 (179)
T d2ff4a2          85 -----------AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV---KTTLADDLGIDPG  140 (179)
T ss_dssp             -----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH---HHHHHHHHSCCCC
T ss_pred             -----------HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH---HHHHHHHhCCCcC
Confidence                       9999999999999999999999999999999998665444432   3444555778886

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=3.9e-06  Score=59.58  Aligned_cols=93  Identities=9%  Similarity=0.050  Sum_probs=70.1

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHhhchhh
Q psy9159          53 LTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-NTQKWYGICVGANGQFQS  131 (259)
Q Consensus        53 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~-~~~~~la~~~~~~~~~~~  131 (259)
                      .+.+-....|. ++..|..|+++....+.           ....+|+..+++++..+|.+. ++++.+|..+..+|++. 
T Consensus        24 q~~~e~~~~~s-~qt~F~YAw~Lv~S~~~-----------~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~-   90 (124)
T d2pqrb1          24 QVVSEGGPTAT-IQSRFNYAWGLIKSTDV-----------NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYS-   90 (124)
T ss_dssp             HHHHTTGGGSC-HHHHHHHHHHHHHSSCH-----------HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHH-
T ss_pred             HHHHHhCCCCC-cchHHHHHHHHHcCCcH-----------HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHH-
Confidence            33333333444 78888888888765432           245689999999999998775 78899999999998887 


Q ss_pred             HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q psy9159         132 LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQ  167 (259)
Q Consensus       132 ~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~  167 (259)
                               .|..+++++|+++|+|..+....-.+.
T Consensus        91 ---------~A~~~~~~~L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1          91 ---------MAKRYVDTLFEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             ---------HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence                     567888999999999988877666544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.36  E-value=2.5e-05  Score=62.25  Aligned_cols=152  Identities=18%  Similarity=0.122  Sum_probs=104.5

Q ss_pred             CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHH
Q psy9159          64 DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFR  143 (259)
Q Consensus        64 ~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~  143 (259)
                      ||++++.||..+...+++.              +|+.++++|.+.  +++.+++.+|.++.......      .....+.
T Consensus         1 ~p~~~~~lG~~~~~~~d~~--------------~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~------~d~~~a~   58 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFT--------------QAKKYFEKACDL--KENSGCFNLGVLYYQGQGVE------KNLKKAA   58 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC------CCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcc------hhHHHHH
Confidence            6899999999999988875              999999999765  68999999999986532222      1122455


Q ss_pred             HHHHHHHccCCCChhHHHHHHHHHHHhhcc--------chHHHHHH-----------H-HHhcCCCCCcHHHHHHHHHHH
Q psy9159         144 DQMNKAIQMAPKDFTLYSLKGRYQYEISKL--------SFFERKIA-----------V-LIVSDLDEPTAEDAIANCLKA  203 (259)
Q Consensus       144 ~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~--------~~~~~~~~-----------~-~~~~~~~~g~~~eAi~~~~kA  203 (259)
                      ..++++.  ++.++.+...+|.++......        .++.++..           . ...+.........|+..+.+.
T Consensus        59 ~~~~~a~--~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~  136 (265)
T d1ouva_          59 SFYAKAC--DLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA  136 (265)
T ss_dssp             HHHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred             Hhhcccc--cccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhh
Confidence            6677764  445778888888766542111        12222211           1 112334567788888888888


Q ss_pred             HhhCCCCcHHhHHHHHHHHHH----hCCHHHHHHHHHHHhcCC
Q psy9159         204 EELAPAPWKENQLLIAKCYIE----AGEYAKAVQWLDKAKAIP  242 (259)
Q Consensus       204 i~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~kal~l~  242 (259)
                      .....   ...+..||.++..    ..+...+..+++++.+..
T Consensus       137 ~~~~~---~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g  176 (265)
T d1ouva_         137 CDLND---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK  176 (265)
T ss_dssp             HHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hcccc---cchhhhhhhhhccCCCcccccccchhhhhcccccc
Confidence            77543   6778889999886    467788888888887653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=7e-07  Score=63.57  Aligned_cols=90  Identities=10%  Similarity=-0.040  Sum_probs=68.6

Q ss_pred             HHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHH
Q psy9159         144 DQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYI  223 (259)
Q Consensus       144 ~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~  223 (259)
                      .-+.+...-.|+ ..+.+.+|.++.....                 .++.++||..++.++..+|.+..+.+++||.+|.
T Consensus        23 ~q~~~e~~~~~s-~qt~F~YAw~Lv~S~~-----------------~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yy   84 (124)
T d2pqrb1          23 QQVVSEGGPTAT-IQSRFNYAWGLIKSTD-----------------VNDERLGVKILTDIYKEAESRRRECLYYLTIGCY   84 (124)
T ss_dssp             HHHHHTTGGGSC-HHHHHHHHHHHHHSSC-----------------HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCC-cchHHHHHHHHHcCCc-----------------HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            334444333333 5778888877665422                 2567999999999999999333478899999999


Q ss_pred             HhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159         224 EAGEYAKAVQWLDKAKAIPVVSYESHDL  251 (259)
Q Consensus       224 ~~g~~~eA~~~~~kal~l~p~~~~~~~~  251 (259)
                      ++|++++|.++++++++++|+|.....+
T Consensus        85 klgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          85 KLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            9999999999999999999998765544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.09  E-value=4.3e-05  Score=54.77  Aligned_cols=120  Identities=20%  Similarity=0.124  Sum_probs=86.4

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      .++++|+..|+++.+..  ++.+.+.|+..+  ..              +.++|+.+++++.+.  +++.+.+.+|.++.
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~~~--~~--------------~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~   66 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVSNS--QI--------------NKQKLFQYLSKACEL--NSGNGCRFLGDFYE   66 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHTCT--TS--------------CHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcccc--cc--------------CHHHHHHHHhhhhcc--cchhhhhhHHHhhh
Confidence            58999999999998764  555555555211  11              235899999998775  68999999998875


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE  204 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi  204 (259)
                      . |....     .+..++.+.++++.+.  .++.+.+.||.+|..                |..-..++++|+.+|++|.
T Consensus        67 ~-g~~~~-----~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~----------------G~gv~~d~~~A~~~~~~Aa  122 (133)
T d1klxa_          67 N-GKYVK-----KDLRKAAQYYSKACGL--NDQDGCLILGYKQYA----------------GKGVVKNEKQAVKTFEKAC  122 (133)
T ss_dssp             H-CSSSC-----CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH----------------TSSSCCCHHHHHHHHHHHH
T ss_pred             h-ccccc-----hhhHHHHHHHhhhhcc--CcchHHHHHHHHHHc----------------CCccCCCHHHHHHHHHHHH
Confidence            3 22110     1233678999999765  678999999998865                1112368999999999999


Q ss_pred             hhCC
Q psy9159         205 ELAP  208 (259)
Q Consensus       205 ~l~P  208 (259)
                      ++..
T Consensus       123 ~~G~  126 (133)
T d1klxa_         123 RLGS  126 (133)
T ss_dssp             HTTC
T ss_pred             HCCC
Confidence            9864

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.05  E-value=3.6  Score=32.89  Aligned_cols=30  Identities=3%  Similarity=0.089  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159         141 VFRDQMNKAIQMAPKDFTLYSLKGRYQYEI  170 (259)
Q Consensus       141 ~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~  170 (259)
                      .....++.++.+++.+...++.++.+|.+.
T Consensus       117 ~Li~~Le~~~~~~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_         117 ELITMLEAALGLERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             HHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence            445778888999999999999999877553

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=87.99  E-value=5.9  Score=32.52  Aligned_cols=160  Identities=11%  Similarity=0.013  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159          45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG  124 (259)
Q Consensus        45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~  124 (259)
                      +..+.+...+........+.....+.++.+. ..++.              ..+...+...-.-....+...+|+|..+.
T Consensus       266 ~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al-~~~~~--------------~~~~~~~~~l~~~~~~~~r~~YW~gRa~~  330 (450)
T d1qsaa1         266 DVTDEQAKWRDDAIMRSQSTSLIERRVRMAL-GTGDR--------------RGLNTWLARLPMEAKEKDEWRYWQADLLL  330 (450)
T ss_dssp             TCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHTCH--------------HHHHHHHHHSCTTGGGSHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHhhcccccchHHHHHHHHHHH-HcCCh--------------HHHHHHHHhcCcccccHHHHHHHHHHHHH
Confidence            4455565555555554444444444444332 22332              35555554432222234666799999999


Q ss_pred             HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhh-cc----------------chHHHHHHHHHhcC
Q psy9159         125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEIS-KL----------------SFFERKIAVLIVSD  187 (259)
Q Consensus       125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~-~~----------------~~~~~~~~~~~~~~  187 (259)
                      ..|+...          +...+..+-. .|   .+|-.|+.-..... .+                +.+.+..  .++. 
T Consensus       331 ~~G~~~~----------A~~~~~~~a~-~~---~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~--~L~~-  393 (450)
T d1qsaa1         331 ERGREAE----------AKEILHQLMQ-QR---GFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVR--ELMY-  393 (450)
T ss_dssp             HTTCHHH----------HHHHHHHHHT-SC---SHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHH--HHHH-
T ss_pred             HcCChhh----------HHHHHHHHhc-CC---ChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHH--HHHH-
Confidence            9988763          4556666543 22   24444443211110 00                0111211  1111 


Q ss_pred             CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159         188 LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI  241 (259)
Q Consensus       188 ~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l  241 (259)
                        .|...+|...+..++..-+   ..-...+|..-...|.++.||....++-..
T Consensus       394 --~g~~~~A~~e~~~l~~~~~---~~~~~~la~lA~~~g~~~~aI~a~~~~~~~  442 (450)
T d1qsaa1         394 --WNLDNTARSEWANLVKSKS---KTEQAQLARYAFNNQWWDLSVQATIAGKLW  442 (450)
T ss_dssp             --TTCHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHTTCHHHHHHHHHHTTCT
T ss_pred             --cCCchHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCChhHHHHHHHHHHcc
Confidence              4899999999998876433   455778899999999999999999888443