Psyllid ID: psy9170

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
MYDYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCVLIR
Secondary Structure (PSIPRED)
cccccccEEEEEcccHHHHHHHHHHHHccccEEcccEEEEEEccccccccccccccHHHHHHHHHHcccccHHHHHHHHcccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccHHHHHEEHccHHHHHHHHHHHccccccEcccEEEEEEccccEEccccccccEEEEEEEEcccccccHHHHHHHHHccccHEEEEEEEcc
Coil and Loop (DISEMBL)
MYDYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFsnhkelktdqthSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCVLIR
Flexible Loop (DISEMBL)
MYDYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCVLIR
Low Complexity Region (SEG)
MYDYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCVLIR
Disordered region (IsUnstruct)
***YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCVLI*
Disordered Region (DISOPRED)
***YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS******************LTIGIILRPATHYQVHLIRSACQVYLIVCVLIR
Disordered Region (DISEMBL)
MYDYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCVLIR
Disordered Region (DISPRO)
MYDYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCVLIR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYDYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCVLIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	94	2.2.26 [Sep-21-2011]
Q00438	555	Polypyrimidine tract-bind	yes	N/A	0.489	0.082	0.608	6e-11
Q29099	557	Polypyrimidine tract-bind	yes	N/A	0.489	0.082	0.608	1e-10
P26599	531	Polypyrimidine tract-bind	yes	N/A	0.489	0.086	0.608	1e-10
Q8WN55	531	Polypyrimidine tract-bind	yes	N/A	0.489	0.086	0.608	1e-10
P17225	527	Polypyrimidine tract-bind	no	N/A	0.489	0.087	0.608	1e-10
O95758	552	Polypyrimidine tract-bind	no	N/A	0.468	0.079	0.636	5e-10
Q9Z118	523	Polypyrimidine tract-bind	no	N/A	0.468	0.084	0.613	7e-10
Q8BHD7	523	Polypyrimidine tract-bind	no	N/A	0.468	0.084	0.613	7e-10
Q66H20	531	Polypyrimidine tract-bind	no	N/A	0.489	0.086	0.586	7e-10
Q91Z31	531	Polypyrimidine tract-bind	no	N/A	0.489	0.086	0.586	7e-10

>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus GN=Ptbp1 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 37/46 (80%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQT 53
           QAF+EM+ E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD +
Sbjct: 95  QAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSS 140

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10.
Rattus norvegicus (taxid: 10116)

>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQT 53
           QAF+EM  E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD +
Sbjct: 96  QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSS 141

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10.

Sus scrofa (taxid: 9823)

>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQT 53
           QAF+EM  E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD +
Sbjct: 96  QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSS 141

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10.

Homo sapiens (taxid: 9606)

>sp|Q8WN55|PTBP1_BOVIN Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQT 53
           QAF+EM  E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD +
Sbjct: 96  QAFIEMHTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSS 141

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10.

Bos taurus (taxid: 9913)

>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1 PE=1 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQT 53
           QAF+EM  E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD +
Sbjct: 95  QAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSS 140

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10.

Mus musculus (taxid: 10090)

>sp|O95758|PTBP3_HUMAN Polypyrimidine tract-binding protein 3 OS=Homo sapiens GN=PTBP3 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/44 (63%), Positives = 33/44 (75%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD 51
           QAFLEMA E AA TMV Y+T     LR + VY+Q+SNH+ELKTD
Sbjct: 96  QAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTD 139

RNA-binding protein that mediates pre-mRNA alternative splicing regulation. Plays a role in the regulation of cell proliferation, differentiation and migration. Positive regulator of EPO-dependent erythropoiesis. Participates in cell differentiation regulation by repressing tissue-specific exons. Promotes FAS exon 6 skipping. Binds RNA, preferentially to both poly(G) and poly(U).

Homo sapiens (taxid: 9606)

>sp|Q9Z118|PTBP3_RAT Polypyrimidine tract-binding protein 3 OS=Rattus norvegicus GN=Ptbp3 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/44 (61%), Positives = 33/44 (75%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD 51
           QAFLEMA E AA TM+ Y+T     LR + VY+Q+SNH+ELKTD
Sbjct: 67  QAFLEMASEEAAVTMINYYTPVTPHLRSQPVYIQYSNHRELKTD 110

RNA-binding protein that mediates pre-mRNA alternative splicing regulation. Plays a role in the regulation of cell proliferation, differentiation and migration. Positive regulator of EPO-dependent erythropoiesis. Participates in cell differentiation regulation by repressing tissue-specific exons. Promotes Fas exon 6 skipping. Binds RNA, preferentially to both poly(G) and poly(U).

Rattus norvegicus (taxid: 10116)

>sp|Q8BHD7|PTBP3_MOUSE Polypyrimidine tract-binding protein 3 OS=Mus musculus GN=Ptbp3 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/44 (61%), Positives = 33/44 (75%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD 51
           QAFLEMA E AA TM+ Y+T     LR + VY+Q+SNH+ELKTD
Sbjct: 67  QAFLEMASEEAAVTMINYYTPVTPHLRSQPVYIQYSNHRELKTD 110

RNA-binding protein that mediates pre-mRNA alternative splicing regulation. Plays a role in the regulation of cell proliferation, differentiation and migration. Positive regulator of EPO-dependent erythropoiesis. Participates in cell differentiation regulation by repressing tissue-specific exons. Promotes Fas exon 6 skipping. Binds RNA, preferentially to both poly(G) and poly(U).

Mus musculus (taxid: 10090)

>sp|Q66H20|PTBP2_RAT Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus GN=Ptbp2 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 34/46 (73%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQT 53
           QAFLE+A E AA TMV Y++     LR + +Y+Q+SNHKELKTD T
Sbjct: 96  QAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNT 141

RNA-binding protein which binds to intronic polypyrimidine tracts and mediates negative regulation of exons splicing. May antagonize in a tissue-specific manner the ability of NOVA1 to activate exon selection. Beside its function in pre-mRNA splicing, plays also a role in the regulation of translation.

Rattus norvegicus (taxid: 10116)

>sp|Q91Z31|PTBP2_MOUSE Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2 PE=1 SV=2

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 34/46 (73%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQT 53
           QAFLE+A E AA TMV Y++     LR + +Y+Q+SNHKELKTD T
Sbjct: 96  QAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNT 141

RNA-binding protein which binds to intronic polypyrimidine tracts and mediates negative regulation of exons splicing. May antagonize in a tissue-specific manner the ability of NOVA1 to activate exon selection. Beside its function in pre-mRNA splicing, plays also a role in the regulation of translation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
328712480	632	PREDICTED: polypyrimidine tract-binding	0.5	0.074	0.872	1e-17
328712478	613	PREDICTED: polypyrimidine tract-binding	0.5	0.076	0.872	1e-17
328712476	581	PREDICTED: polypyrimidine tract-binding	0.5	0.080	0.872	1e-17
380018871	578	PREDICTED: polypyrimidine tract-binding	0.521	0.084	0.816	2e-17
350418407	578	PREDICTED: polypyrimidine tract-binding	0.521	0.084	0.816	2e-17
340726548	578	PREDICTED: polypyrimidine tract-binding	0.521	0.084	0.816	2e-17
332027758	225	Polypyrimidine tract-binding protein 1 [	0.585	0.244	0.745	1e-16
383854460	552	PREDICTED: polypyrimidine tract-binding	0.542	0.092	0.745	1e-16
189241313	822	PREDICTED: similar to polypyrimidine tra	0.542	0.062	0.764	2e-16
345496639	587	PREDICTED: polypyrimidine tract-binding	0.542	0.086	0.784	3e-16

>gi|328712480|ref|XP_003244821.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 3 [Acyrthosiphon pisum]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/47 (87%), Positives = 44/47 (93%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTH 54
           QAFLEMADE +AS MVTYFTTC AQLRGRAV++QFSNHKELKTDQTH
Sbjct: 119 QAFLEMADETSASAMVTYFTTCTAQLRGRAVFIQFSNHKELKTDQTH 165

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712478|ref|XP_001947870.2| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 1 [Acyrthosiphon pisum]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/47 (87%), Positives = 44/47 (93%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTH 54
           QAFLEMADE +AS MVTYFTTC AQLRGRAV++QFSNHKELKTDQTH
Sbjct: 119 QAFLEMADETSASAMVTYFTTCTAQLRGRAVFIQFSNHKELKTDQTH 165

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712476|ref|XP_003244820.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 2 [Acyrthosiphon pisum]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/47 (87%), Positives = 44/47 (93%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTH 54
           QAFLEMADE +AS MVTYFTTC AQLRGRAV++QFSNHKELKTDQTH
Sbjct: 87  QAFLEMADETSASAMVTYFTTCTAQLRGRAVFIQFSNHKELKTDQTH 133

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018871|ref|XP_003693343.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Apis florea]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/49 (81%), Positives = 46/49 (93%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSN 56
           QAFLEMADE AA+TMV Y+ +C+AQLRGRAVYVQFSNH+ELKTDQTH+N
Sbjct: 112 QAFLEMADENAAATMVNYYASCMAQLRGRAVYVQFSNHRELKTDQTHTN 160

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418407|ref|XP_003491847.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Bombus impatiens]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/49 (81%), Positives = 46/49 (93%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSN 56
           QAFLEMADE AA+TMV Y+ +C+AQLRGRAVYVQFSNH+ELKTDQTH+N
Sbjct: 112 QAFLEMADENAAATMVNYYASCMAQLRGRAVYVQFSNHRELKTDQTHTN 160

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726548|ref|XP_003401618.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Bombus terrestris]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/49 (81%), Positives = 46/49 (93%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSN 56
           QAFLEMADE AA+TMV Y+ +C+AQLRGRAVYVQFSNH+ELKTDQTH+N
Sbjct: 112 QAFLEMADENAAATMVNYYASCMAQLRGRAVYVQFSNHRELKTDQTHTN 160

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027758|gb|EGI67825.1| Polypyrimidine tract-binding protein 1 [Acromyrmex echinatior]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/55 (74%), Positives = 45/55 (81%)

Query: 9   AFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLT 63
           AFLEM DE AA+TMV Y+ T VAQLRGRAVYVQFSNH+ELKTDQTHSN  +   T
Sbjct: 149 AFLEMGDENAAATMVNYYATGVAQLRGRAVYVQFSNHRELKTDQTHSNNAVSSPT 203

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854460|ref|XP_003702739.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Megachile rotundata]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/51 (74%), Positives = 47/51 (92%)

Query: 6  EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSN 56
          E+ AFLEMADE AA+T+V+Y+ +C+AQLRGR VYVQFSNH+ELKTDQTH+N
Sbjct: 9  ELGAFLEMADENAAATIVSYYASCIAQLRGRPVYVQFSNHRELKTDQTHAN 59

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241313|ref|XP_966484.2| PREDICTED: similar to polypyrimidine tract binding protein [Tribolium castaneum]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/51 (76%), Positives = 47/51 (92%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNAL 58
           QAFLEM +E +A+TMV YF++ +AQLRGRAVYVQ+SNHKELKTDQTHSNA+
Sbjct: 339 QAFLEMGEESSATTMVNYFSSSMAQLRGRAVYVQYSNHKELKTDQTHSNAV 389

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496639|ref|XP_001603240.2| PREDICTED: polypyrimidine tract-binding protein 1-like [Nasonia vitripennis]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/51 (78%), Positives = 46/51 (90%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNAL 58
           QAFLEMADE +A+TMVTY  +C AQLRGRAVYVQFSNH+ELKTDQ H+NA+
Sbjct: 112 QAFLEMADEGSAATMVTYCASCPAQLRGRAVYVQFSNHRELKTDQGHNNAV 162

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
FB|FBgn0011224	789	heph "hephaestus" [Drosophila	0.531	0.063	0.64	7.3e-12
UNIPROTKB|K7EKJ7	236	PTBP1 "Polypyrimidine tract-bi	0.563	0.224	0.566	4.5e-11
UNIPROTKB|K7ELW5	233	PTBP1 "Polypyrimidine tract-bi	0.542	0.218	0.568	5.8e-11
UNIPROTKB|K7ES59	209	PTBP1 "Polypyrimidine tract-bi	0.531	0.239	0.58	7.4e-11
UNIPROTKB|D4AB53	528	Ptbp1 "Polypyrimidine tract-bi	0.531	0.094	0.58	3.4e-10
UNIPROTKB|F1LM18	554	Ptbp1 "Polypyrimidine tract-bi	0.531	0.090	0.58	3.7e-10
RGD|62047	555	Ptbp1 "polypyrimidine tract bi	0.531	0.090	0.58	3.7e-10
UNIPROTKB|Q6P736	556	Ptbp1 "Polypyrimidine tract bi	0.531	0.089	0.58	3.7e-10
UNIPROTKB|A8YXY5	446	PTBP1 "PTBP1 protein" [Bos tau	0.531	0.112	0.58	5.3e-10
UNIPROTKB|Q8WN55	531	PTBP1 "Polypyrimidine tract-bi	0.531	0.094	0.58	7.2e-10

FB|FBgn0011224 heph "hephaestus" [Drosophila melanogaster (taxid:7227)]

 Score = 172 (65.6 bits), Expect = 7.3e-12, P = 7.3e-12
 Identities = 32/50 (64%), Positives = 42/50 (84%)

Query:     8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNA 57
             QAF+EMADE +A++MV+ +T    Q+RGR VYVQFSNH+ELKTDQ H+N+
Sbjct:   292 QAFIEMADEISATSMVSCYTVTPPQMRGRMVYVQFSNHRELKTDQGHNNS 341

GO:0007286 "spermatid development" evidence=IMP

GO:0008187 "poly-pyrimidine tract binding" evidence=ISS;NAS

GO:0003729 "mRNA binding" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0007219 "Notch signaling pathway" evidence=IMP

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0007319 "negative regulation of oskar mRNA translation" evidence=IMP

GO:0008103 "oocyte microtubule cytoskeleton polarization" evidence=IMP

GO:0003730 "mRNA 3'-UTR binding" evidence=IDA

GO:0000900 "translation repressor activity, nucleic acid binding" evidence=IMP

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:2001020 "regulation of response to DNA damage stimulus" evidence=IGI

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

UNIPROTKB|K7EKJ7 PTBP1 "Polypyrimidine tract-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 30/53 (56%), Positives = 39/53 (73%)

Query:     8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLL 60
             QAF+EM  E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD + + A  L
Sbjct:    96 QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQAAAL 148

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|K7ELW5 PTBP1 "Polypyrimidine tract-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 29/51 (56%), Positives = 39/51 (76%)

Query:     8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNAL 58
             QAF+EM  E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD + + A+
Sbjct:    96 QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQAV 146

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|K7ES59 PTBP1 "Polypyrimidine tract-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 29/50 (58%), Positives = 38/50 (76%)

Query:     8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNA 57
             QAF+EM  E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD + + A
Sbjct:    66 QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQA 115

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|D4AB53 Ptbp1 "Polypyrimidine tract-binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 154 (59.3 bits), Expect = 3.4e-10, P = 3.4e-10
 Identities = 29/50 (58%), Positives = 39/50 (78%)

Query:     8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNA 57
             QAF+EM+ E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD + + A
Sbjct:    95 QAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSSPNQA 144

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|F1LM18 Ptbp1 "Polypyrimidine tract-binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 154 (59.3 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 29/50 (58%), Positives = 39/50 (78%)

Query:     8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNA 57
             QAF+EM+ E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD + + A
Sbjct:    95 QAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSSPNQA 144

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

RGD|62047 Ptbp1 "polypyrimidine tract binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 154 (59.3 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 29/50 (58%), Positives = 39/50 (78%)

Query:     8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNA 57
             QAF+EM+ E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD + + A
Sbjct:    95 QAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSSPNQA 144

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=ISO;ISS

GO:0003697 "single-stranded DNA binding" evidence=TAS

GO:0003723 "RNA binding" evidence=IEA;TAS

GO:0004519 "endonuclease activity" evidence=TAS

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=TAS

GO:0033119 "negative regulation of RNA splicing" evidence=ISO

GO:0036002 "pre-mRNA binding" evidence=ISO

GO:0048025 "negative regulation of mRNA splicing, via spliceosome" evidence=ISO;ISS

GO:0051148 "negative regulation of muscle cell differentiation" evidence=ISO;ISS

UNIPROTKB|Q6P736 Ptbp1 "Polypyrimidine tract binding protein 1, isoform CRA_a" [Rattus norvegicus (taxid:10116)]

 Score = 154 (59.3 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 29/50 (58%), Positives = 39/50 (78%)

Query:     8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNA 57
             QAF+EM+ E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD + + A
Sbjct:    95 QAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSSPNQA 144

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|A8YXY5 PTBP1 "PTBP1 protein" [Bos taurus (taxid:9913)]

 Score = 151 (58.2 bits), Expect = 5.3e-10, P = 5.3e-10
 Identities = 29/50 (58%), Positives = 38/50 (76%)

Query:     8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNA 57
             QAF+EM  E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD + + A
Sbjct:    96 QAFIEMHTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQA 145

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q8WN55 PTBP1 "Polypyrimidine tract-binding protein 1" [Bos taurus (taxid:9913)]

 Score = 151 (58.2 bits), Expect = 7.2e-10, P = 7.2e-10
 Identities = 29/50 (58%), Positives = 38/50 (76%)

Query:     8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNA 57
             QAF+EM  E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD + + A
Sbjct:    96 QAFIEMHTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQA 145

GO:0005634 "nucleus" evidence=ISS

GO:0051148 "negative regulation of muscle cell differentiation" evidence=ISS

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=ISS

GO:0048025 "negative regulation of mRNA splicing, via spliceosome" evidence=IEA

GO:0036002 "pre-mRNA binding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8WN55	PTBP1_BOVIN	No assigned EC number	0.6086	0.4893	0.0866	yes	N/A
Q00438	PTBP1_RAT	No assigned EC number	0.6086	0.4893	0.0828	yes	N/A
Q29099	PTBP1_PIG	No assigned EC number	0.6086	0.4893	0.0825	yes	N/A
P26599	PTBP1_HUMAN	No assigned EC number	0.6086	0.4893	0.0866	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	94
cd12688	81	cd12688, RRM1_PTBP1_like, RNA recognition motif 1	6e-21
cd12777	81	cd12777, RRM1_PTBP1, RNA recognition motif 1 in ve	2e-15
cd12778	82	cd12778, RRM1_PTBP2, RNA recognition motif 1 in ve	7e-15
cd12779	90	cd12779, RRM1_ROD1, RNA recognition motif 1 in ver	3e-14
TIGR01649	481	TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus spl	4e-13
cd12421	74	cd12421, RRM1_PTBP1_hnRNPL_like, RNA recognition m	1e-10
cd12686	81	cd12686, RRM1_PTBPH1_PTBPH2, RNA recognition motif	1e-06
cd12687	75	cd12687, RRM1_PTBPH3, RNA recognition motif 1 in p	1e-06
pfam13893	56	pfam13893, RRM_5, RNA recognition motif	0.003

>gnl|CDD|241132 cd12688, RRM1_PTBP1_like, RNA recognition motif 1 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins

 Score = 78.6 bits (194), Expect = 6e-21
 Identities = 32/44 (72%), Positives = 35/44 (79%)

Query: 8  QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD 51
          QAFLEMADE AA TMV Y+T     LRGR VYVQ+SNH+ELKTD
Sbjct: 38 QAFLEMADEEAAVTMVNYYTYVTPNLRGRPVYVQYSNHRELKTD 81

This subfamily corresponds to the RRM1 of polypyrimidine tract-binding protein 1 (PTB or hnRNP I), polypyrimidine tract-binding protein 2 (PTBP2 or nPTB), regulator of differentiation 1 (Rod1), and similar proteins found in Metazoa. PTB is an important negative regulator of alternative splicing in mammalian cells and functions at several aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTBP2 is highly homologous to PTB and is perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. PTBP2 also contains four RRMs. ROD1 coding protein Rod1 is a mammalian PTB homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein and negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It may play a role controlling differentiation in mammals. All members in this family contain four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 81

>gnl|CDD|241221 cd12777, RRM1_PTBP1, RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein 1 (PTB)

 Score = 64.7 bits (157), Expect = 2e-15
 Identities = 27/44 (61%), Positives = 35/44 (79%)

Query: 8  QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD 51
          QAFLEM  E AA+TMV Y+++    LRG+ +Y+Q+SNHKELKTD
Sbjct: 38 QAFLEMNTEEAANTMVNYYSSVTPVLRGQPIYIQYSNHKELKTD 81

This subgroup corresponds to the RRM1 of PTB, also known as 58 kDa RNA-binding protein PPTB-1 or heterogeneous nuclear ribonucleoprotein I (hnRNP I), an important negative regulator of alternative splicing in mammalian cells. PTB also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTB contains four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). RRM1 and RRM2 are independent from each other and separated by flexible linkers. By contrast, there is an unusual and conserved interdomain interaction between RRM3 and RRM4. It is widely held that only RRMs 3 and 4 are involved in RNA binding and RRM2 mediates PTB homodimer formation. However, new evidence shows that the RRMs 1 and 2 also contribute substantially to RNA binding. Moreover, PTB may not always dimerize to repress splicing. It is a monomer in solution. . Length = 81

>gnl|CDD|241222 cd12778, RRM1_PTBP2, RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein 2 (PTBP2)

 Score = 63.2 bits (153), Expect = 7e-15
 Identities = 27/44 (61%), Positives = 33/44 (75%)

Query: 8  QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD 51
          QAFLE+A E AA TMV Y+T     LR + +Y+Q+SNHKELKTD
Sbjct: 39 QAFLELATEEAAITMVNYYTAVTPHLRNQPIYIQYSNHKELKTD 82

This subgroup corresponds to the RRM1 of PTBP2, also known as neural polypyrimidine tract-binding protein or neurally-enriched homolog of PTB (nPTB), highly homologous to polypyrimidine tract binding protein (PTB) and perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. PTBP2 contains four RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 82

>gnl|CDD|241223 cd12779, RRM1_ROD1, RNA recognition motif 1 in vertebrate regulator of differentiation 1 (Rod1)

 Score = 61.7 bits (149), Expect = 3e-14
 Identities = 28/44 (63%), Positives = 33/44 (75%)

Query: 8  QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD 51
          QAFLEMA E AA TMV Y+T     LR + VY+Q+SNH+ELKTD
Sbjct: 43 QAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTD 86

This subgroup corresponds to the RRM1 of ROD1 coding protein Rod1, a mammalian polypyrimidine tract binding protein (PTB) homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein that negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It might play a role controlling differentiation in mammals. Rod1 contains four repeats of RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain) and does have RNA binding activities. . Length = 90

>gnl|CDD|233508 TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus splicing factor family

 Score = 62.9 bits (153), Expect = 4e-13
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 8  QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNA 57
          QA +E  DE +A   V + T+    +RG+  +  +S  +E+K D      
Sbjct: 40 QALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFD 89

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). Length = 481

>gnl|CDD|240867 cd12421, RRM1_PTBP1_hnRNPL_like, RNA recognition motif in polypyrimidine tract-binding protein 1 (PTB or hnRNP I), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), and similar proteins

 Score = 52.2 bits (126), Expect = 1e-10
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query: 8  QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH 45
          QA +EM    +A +MV Y+ T  A +RGR VY+Q+SNH
Sbjct: 37 QALVEMDSVESAKSMVDYYLTVPALIRGRRVYIQYSNH 74

This subfamily corresponds to the RRM1 of the majority of family members that include polypyrimidine tract-binding protein 1 (PTB or hnRNP I), polypyrimidine tract-binding protein 2 (PTBP2 or nPTB), regulator of differentiation 1 (Rod1), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), polypyrimidine tract-binding protein homolog 3 (PTBPH3), polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2), and similar proteins. PTB is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTBP2 is highly homologous to PTB and is perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. Rod1 is a mammalian polypyrimidine tract binding protein (PTB) homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It might play a role controlling differentiation in mammals. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL protein plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. The family also includes polypyrimidine tract binding protein homolog 3 (PTBPH3) found in plant. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to other family members, all of which contain four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). Although their biological roles remain unclear, both PTBPH1 and PTBPH2 show significant sequence similarity to PTB. However, in contrast to PTB, they have three RRMs. In addition, this family also includes RNA-binding motif protein 20 (RBM20) that is an alternative splicing regulator associated with dilated cardiomyopathy (DCM) and contains only one RRM. . Length = 74

>gnl|CDD|241130 cd12686, RRM1_PTBPH1_PTBPH2, RNA recognition motif 1 in plant polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2)

 Score = 42.2 bits (99), Expect = 1e-06
 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)

Query: 8  QAFLEMADECAASTMVTYFTTCV--AQLRGRAVYVQFSN 44
          QAF+E AD   A  MV+Y+ +    AQ+RG+ VY+Q+SN
Sbjct: 42 QAFVEFADLNQAIAMVSYYASSSEPAQVRGKTVYLQYSN 80

This subfamily corresponds to the RRM1 of PTBPH1 and PTBPH2. Although their biological roles remain unclear, PTBPH1 and PTBPH2 show significant sequence similarity to polypyrimidine tract binding protein (PTB) that is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. Both, PTBPH1 and PTBPH2, contain three RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 81

>gnl|CDD|241131 cd12687, RRM1_PTBPH3, RNA recognition motif 1 in plant polypyrimidine tract-binding protein homolog 3 (PTBPH3)

 Score = 41.9 bits (98), Expect = 1e-06
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 8  QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH 45
          QA L+M D  +A + + Y+TT    +RGR VY+QFS+H
Sbjct: 38 QALLQMQDVSSAISALQYYTTVQPSVRGRNVYIQFSSH 75

This subfamily corresponds to the RRM1 of PTBPH3. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to polypyrimidine tract binding protein (PTB) that is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. Like PTB, PTBPH3 contains four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 75

>gnl|CDD|206064 pfam13893, RRM_5, RNA recognition motif

 Score = 32.5 bits (75), Expect = 0.003
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 8  QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS 43
           AF+E + E AA   V Y    +    GR + V +S
Sbjct: 23 FAFVEFSTEEAAEKAVQYLNGVL--FGGRPLRVDYS 56

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
KOG1190|consensus	492		99.95
KOG1456|consensus	494		99.94
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.67
KOG1190|consensus	492		98.53
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	98.36
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	98.17
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	97.97
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	97.9
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	97.88
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	97.68
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	97.64
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	97.59
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	97.48
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	97.35
KOG0131|consensus	203		97.28
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	97.2
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	97.19
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	96.98
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	96.2
KOG0148|consensus	321		96.2
KOG4206|consensus	221		96.15
KOG0110|consensus	725		96.13
smart00362	72	RRM_2 RNA recognition motif.	95.68
smart00360	71	RRM RNA recognition motif.	95.64
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	95.3
smart00361	70	RRM_1 RNA recognition motif.	94.97
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	94.8
KOG0117|consensus	506		94.5
KOG0123|consensus	369		93.97
KOG0107|consensus	195		93.23
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	92.59
KOG0123|consensus	369		92.52
COG0724	306	RNA-binding proteins (RRM domain) [General functio	91.62
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	90.63
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	90.44
KOG1456|consensus	494		90.23
KOG0111|consensus	298		88.92
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	88.1
KOG0109|consensus	346		87.38
KOG0121|consensus	153		84.6
KOG4208|consensus	214		81.35

>KOG1190|consensus

Probab=99.95  E-value=5.3e-29  Score=197.63  Aligned_cols=89  Identities=39%  Similarity=0.541  Sum_probs=82.7

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCC-----------------------------
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQT-----------------------------   53 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s-----------------------------   53 (94)
                      .++|||||+||+|+++|.+||+||+..||.+||+++|+|||+|.+|++++.                             
T Consensus        61 lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~  140 (492)
T KOG1190|consen   61 LKGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVV  140 (492)
T ss_pred             eccchhhhhhhcchhhhhheeecccccCccccCcceeehhhhHHHHhccCchhhhhhhhHHhhhhccccccccccccccc
Confidence            578999999999999999999999999999999999999999999998631                             


Q ss_pred             ----CCCCcEEEEEEcccCCceeHhHHHhhhcccc-ceEEEEE
Q psy9170          54 ----HSNALLLHLTIGIILRPATHYQVHLIRSACQ-VYLIVCV   91 (94)
Q Consensus        54 ----~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g-~~~~v~~   91 (94)
                          +.||.||+..|+|+.||||+||||+|||+|| +.||++|
T Consensus       141 ~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF  183 (492)
T KOG1190|consen  141 VGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITF  183 (492)
T ss_pred             ccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEE
Confidence                1468999999999999999999999999999 7888887

>KOG1456|consensus

Probab=99.94  E-value=5.2e-28  Score=190.94  Aligned_cols=89  Identities=17%  Similarity=0.156  Sum_probs=84.0

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc--CCCCCCcEEEEEEcccCCceeHhHHHhhhc
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD--QTHSNALLLHLTIGIILRPATHYQVHLIRS   81 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~--~s~~~n~ILL~TI~n~~ypItvdvlh~i~s   81 (94)
                      ++|+|||+||+|++.|+++|+|.+.+++++.|++.+++||+++.|+++  ++..||+|||+||.||+||||+||||+||+
T Consensus        65 P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icn  144 (494)
T KOG1456|consen   65 PHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICN  144 (494)
T ss_pred             cccceeeeeeccccchhhheehhccCcccccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcC
Confidence            578899999999999999999999999999999999999999999985  678899999999999999999999999999


Q ss_pred             cccceEEEEEE
Q psy9170          82 ACQVYLIVCVL   92 (94)
Q Consensus        82 ~~g~~~~v~~~   92 (94)
                      ++|.++++.+.
T Consensus       145 p~GkVlRIvIf  155 (494)
T KOG1456|consen  145 PQGKVLRIVIF  155 (494)
T ss_pred             CCCceEEEEEE
Confidence            99988877654

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.67  E-value=3.8e-16  Score=125.06  Aligned_cols=88  Identities=22%  Similarity=0.289  Sum_probs=79.3

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccC-----CCCCCcEEEEEEcccCCceeHhHHHh
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQ-----THSNALLLHLTIGIILRPATHYQVHL   78 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~-----s~~~n~ILL~TI~n~~ypItvdvlh~   78 (94)
                      +.|++|||||++.|+|.++++++..++..++|++++++||++++++++.     +..++++|.+.|.|+.|+||.|.|++
T Consensus        36 ~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~  115 (481)
T TIGR01649        36 PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQ  115 (481)
T ss_pred             CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHH
Confidence            5789999999999999999999988899999999999999999988764     33568999999999999999999999


Q ss_pred             hhccccceEEEEE
Q psy9170          79 IRSACQVYLIVCV   91 (94)
Q Consensus        79 i~s~~g~~~~v~~   91 (94)
                      +|++||.+..|-+
T Consensus       116 ~F~~~G~V~~v~i  128 (481)
T TIGR01649       116 IFNPYGKVLRIVT  128 (481)
T ss_pred             HHhccCCEEEEEE
Confidence            9999997766643

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>KOG1190|consensus

Probab=98.53  E-value=1.9e-07  Score=75.29  Aligned_cols=87  Identities=14%  Similarity=0.078  Sum_probs=69.4

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc----CC----------C-----------------
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD----QT----------H-----------------   54 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~----~s----------~-----------------   54 (94)
                      -.|||++|.|.++|..+....+...++=.-+++.|+||++..|...    +|          .                 
T Consensus       188 ~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~  267 (492)
T KOG1190|consen  188 GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSV  267 (492)
T ss_pred             chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhcccccc
Confidence            4699999999999999999988665554455999999999888641    10          0                 


Q ss_pred             -------------------------CCC-cEEEEEEcccCCceeHhHHHhhhccccceEEEEEE
Q psy9170          55 -------------------------SNA-LLLHLTIGIILRPATHYQVHLIRSACQVYLIVCVL   92 (94)
Q Consensus        55 -------------------------~~n-~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~~   92 (94)
                                               .+. +++|..+.+..|-||.|+||++|+.||.+-+|..|
T Consensus       268 ~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil  331 (492)
T KOG1190|consen  268 PAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKIL  331 (492)
T ss_pred             ccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEee
Confidence                                     111 57777889999999999999999999988887765

>PF13893 RRM_5: RNA recognition motif

Probab=98.36  E-value=1.2e-06  Score=50.85  Aligned_cols=36  Identities=25%  Similarity=0.335  Sum_probs=33.0

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS   43 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS   43 (94)
                      +++|||||++.++|..+++.+...  .+.|+++.++||
T Consensus        21 ~~~a~V~f~~~~~A~~a~~~l~~~--~~~g~~l~V~~a   56 (56)
T PF13893_consen   21 RGFAFVEFASVEDAQKAIEQLNGR--QFNGRPLKVSYA   56 (56)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHTTS--EETTEEEEEEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEEC
Confidence            499999999999999999998765  589999999997

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=98.17  E-value=1.4e-05  Score=64.38  Aligned_cols=80  Identities=19%  Similarity=0.224  Sum_probs=62.7

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCC-------------------------------
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQT-------------------------------   53 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s-------------------------------   53 (94)
                      +|..|||||+|.++|..+++.....  .+.|+++++.+|+++.+..+..                               
T Consensus       312 ~~g~afV~f~~~~~A~~Ai~~lng~--~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~  389 (481)
T TIGR01649       312 KKETALIEMADPYQAQLALTHLNGV--KLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNN  389 (481)
T ss_pred             CCCEEEEEECCHHHHHHHHHHhCCC--EECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccc
Confidence            4689999999999999999998866  7799999999998765422100                               


Q ss_pred             -CCCCcEEEEEEcccCCceeHhHHHhhhccccceEE
Q psy9170          54 -HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLI   88 (94)
Q Consensus        54 -~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~   88 (94)
                       ..|++.|.  |.|.-..+|-|-|-.+|+.||...+
T Consensus       390 ~~~ps~~L~--v~NLp~~~tee~L~~lF~~~G~~~i  423 (481)
T TIGR01649       390 IQPPSATLH--LSNIPLSVSEEDLKELFAENGVHKV  423 (481)
T ss_pred             cCCCCcEEE--EecCCCCCCHHHHHHHHHhcCCccc
Confidence             02345554  7788888999999999999997333

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=97.97  E-value=4.6e-05  Score=61.85  Aligned_cols=78  Identities=8%  Similarity=0.049  Sum_probs=60.6

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQ   84 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g   84 (94)
                      .+..|||+|.+.++|..+++.....  .+.|+++.+.+|....-.+.  ...++   +-|.|.-..+|-+-|+.+|++||
T Consensus        41 s~G~afV~F~~~~~A~~Al~~ln~~--~i~gk~i~i~~s~~~~~~~~--~~~~~---vfV~nLp~~~~~~~L~~~F~~~G  113 (562)
T TIGR01628        41 SLGYGYVNFQNPADAERALETMNFK--RLGGKPIRIMWSQRDPSLRR--SGVGN---IFVKNLDKSVDNKALFDTFSKFG  113 (562)
T ss_pred             cceEEEEEECCHHHHHHHHHHhCCC--EECCeeEEeecccccccccc--cCCCc---eEEcCCCccCCHHHHHHHHHhcC
Confidence            4568999999999999999876543  68999999999975432222  12233   35789999999999999999999


Q ss_pred             ceEEE
Q psy9170          85 VYLIV   89 (94)
Q Consensus        85 ~~~~v   89 (94)
                      .++-+
T Consensus       114 ~i~~~  118 (562)
T TIGR01628       114 NILSC  118 (562)
T ss_pred             Cccee
Confidence            76543

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=97.90  E-value=9.8e-05  Score=61.71  Aligned_cols=84  Identities=17%  Similarity=0.114  Sum_probs=65.4

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhccc-
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSAC-   83 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~-   83 (94)
                      .+.-|||||++.++|..++.-.......+.|+.+.+.++..++-...+...+.++|.  |.|.-+.+|-|-|.+.|++| 
T Consensus       181 nRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~Lf--VgNL~~~~tee~L~~~F~~f~  258 (578)
T TIGR01648       181 NRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILY--VRNLMTTTTEEIIEKSFSEFK  258 (578)
T ss_pred             cCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEE--EeCCCCCCCHHHHHHHHHhcC
Confidence            466899999999999999887776677889999999998865432222233445555  55999999999999999999 


Q ss_pred             -cceEEEE
Q psy9170          84 -QVYLIVC   90 (94)
Q Consensus        84 -g~~~~v~   90 (94)
                       |.+..|-
T Consensus       259 ~G~I~rV~  266 (578)
T TIGR01648       259 PGKVERVK  266 (578)
T ss_pred             CCceEEEE
Confidence             8766653

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=97.88  E-value=7.8e-05  Score=58.51  Aligned_cols=78  Identities=13%  Similarity=0.138  Sum_probs=59.5

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQ   84 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g   84 (94)
                      .|.-|||||+|+++|..++.-...  ..+.|+++.+.+++...-    .....+   +-|.|.-+.+|-|-|-.+|++||
T Consensus       148 srGyaFVeF~~~e~A~~Ai~~LnG--~~l~gr~i~V~~a~p~~~----~~~~~~---lfV~nLp~~vtee~L~~~F~~fG  218 (346)
T TIGR01659       148 SFGYAFVDFGSEADSQRAIKNLNG--ITVRNKRLKVSYARPGGE----SIKDTN---LYVTNLPRTITDDQLDTIFGKYG  218 (346)
T ss_pred             cCcEEEEEEccHHHHHHHHHHcCC--CccCCceeeeeccccccc----ccccce---eEEeCCCCcccHHHHHHHHHhcC
Confidence            356799999999999999987654  477899999999864321    111122   34689999999999999999999


Q ss_pred             ceEEEEE
Q psy9170          85 VYLIVCV   91 (94)
Q Consensus        85 ~~~~v~~   91 (94)
                      .+.-|.+
T Consensus       219 ~V~~v~i  225 (346)
T TIGR01659       219 QIVQKNI  225 (346)
T ss_pred             CEEEEEE
Confidence            7765544

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=97.68  E-value=0.00038  Score=52.73  Aligned_cols=78  Identities=13%  Similarity=0.114  Sum_probs=59.9

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQ   84 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g   84 (94)
                      .|.-|||||++.++|..+++....  ..+.|+++.+.|++.++=    .....+   +-|.|.-+.+|-+-|..+|++||
T Consensus        44 s~g~afV~f~~~~~A~~Ai~~l~g--~~l~g~~i~v~~a~~~~~----~~~~~~---l~v~~l~~~~~~~~l~~~f~~~G  114 (352)
T TIGR01661        44 SLGYGFVNYVRPEDAEKAVNSLNG--LRLQNKTIKVSYARPSSD----SIKGAN---LYVSGLPKTMTQHELESIFSPFG  114 (352)
T ss_pred             cceEEEEEECcHHHHHHHHhhccc--EEECCeeEEEEeeccccc----ccccce---EEECCccccCCHHHHHHHHhccC
Confidence            356799999999999999988765  478999999999864321    111122   45779999999999999999999


Q ss_pred             ceEEEEE
Q psy9170          85 VYLIVCV   91 (94)
Q Consensus        85 ~~~~v~~   91 (94)
                      .+.-+-+
T Consensus       115 ~i~~~~~  121 (352)
T TIGR01661       115 QIITSRI  121 (352)
T ss_pred             CEEEEEE
Confidence            7654433

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=97.64  E-value=0.00036  Score=54.90  Aligned_cols=83  Identities=18%  Similarity=0.093  Sum_probs=60.5

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc------CCCCC-CcEEEEEEcccCCceeHhHH
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD------QTHSN-ALLLHLTIGIILRPATHYQV   76 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~------~s~~~-n~ILL~TI~n~~ypItvdvl   76 (94)
                      +.|..|||||.+.++|..++..   +-..+.|+++.++++....-...      ....| .+.  +-|.|.-+.+|-+-|
T Consensus       129 ~skg~afVeF~~~e~A~~Al~l---~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~--l~v~nl~~~~te~~l  203 (457)
T TIGR01622       129 RSKGVAYVEFYDVESVIKALAL---TGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLK--LYVGNLHFNITEQEL  203 (457)
T ss_pred             CcceEEEEEECCHHHHHHHHHh---CCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCE--EEEcCCCCCCCHHHH
Confidence            3478999999999999999963   34578999999998865322111      01112 233  356898899999999


Q ss_pred             HhhhccccceEEEEE
Q psy9170          77 HLIRSACQVYLIVCV   91 (94)
Q Consensus        77 h~i~s~~g~~~~v~~   91 (94)
                      ..+|++||.+.-|-+
T Consensus       204 ~~~f~~~G~i~~v~~  218 (457)
T TIGR01622       204 RQIFEPFGDIEDVQL  218 (457)
T ss_pred             HHHHHhcCCeEEEEE
Confidence            999999998765543

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=97.59  E-value=0.00044  Score=54.99  Aligned_cols=83  Identities=10%  Similarity=-0.013  Sum_probs=57.0

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee----ee----c-------cC---------CCCCCcE
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE----LK----T-------DQ---------THSNALL   59 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e----L~----~-------~~---------s~~~n~I   59 (94)
                      +.|+.|||||++.|+|..++. .  +-..+.|+++.++-.+...    ..    .       ..         ...+.+-
T Consensus       221 ~~kg~afVeF~~~e~A~~Al~-l--~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (509)
T TIGR01642       221 KEKNFAFLEFRTVEEATFAMA-L--DSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDR  297 (509)
T ss_pred             CCCCEEEEEeCCHHHHhhhhc-C--CCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCE
Confidence            568899999999999999985 2  3347888888886332111    00    0       00         0011222


Q ss_pred             EEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          60 LHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        60 LL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      |  -|.|.-+.+|-|-|..+|+.||.+.-+.+
T Consensus       298 l--~v~nlp~~~~~~~l~~~f~~~G~i~~~~~  327 (509)
T TIGR01642       298 I--YIGNLPLYLGEDQIKELLESFGDLKAFNL  327 (509)
T ss_pred             E--EEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence            2  37899999999999999999998766544

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=97.48  E-value=0.00082  Score=54.59  Aligned_cols=83  Identities=12%  Similarity=0.049  Sum_probs=59.8

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc-CCCCCCcEEEEEEcccCCceeHhHHHhhhcc
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD-QTHSNALLLHLTIGIILRPATHYQVHLIRSA   82 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~-~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~   82 (94)
                      +.|+-|||||++.|+|..++......  .+.|+++++.....+.-... ......+   +-|.|.-+.+|-|-|..+|++
T Consensus       127 ~skg~afV~F~~~e~A~~Ai~~lng~--~~~~~~i~v~~~~~~~~~~~~~~~~~~~---l~V~nl~~~~tee~L~~~F~~  201 (562)
T TIGR01628       127 KSRGYGFVHFEKEESAKAAIQKVNGM--LLNDKEVYVGRFIKKHEREAAPLKKFTN---LYVKNLDPSVNEDKLRELFAK  201 (562)
T ss_pred             CcccEEEEEECCHHHHHHHHHHhccc--EecCceEEEeccccccccccccccCCCe---EEEeCCCCcCCHHHHHHHHHh
Confidence            35788999999999999999876544  78999999975543222111 1111122   346899999999999999999


Q ss_pred             ccceEEEEE
Q psy9170          83 CQVYLIVCV   91 (94)
Q Consensus        83 ~g~~~~v~~   91 (94)
                      ||.+.-+-+
T Consensus       202 fG~i~~~~i  210 (562)
T TIGR01628       202 FGEITSAAV  210 (562)
T ss_pred             cCCEEEEEE
Confidence            997655433

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=97.35  E-value=0.0012  Score=52.49  Aligned_cols=82  Identities=11%  Similarity=0.023  Sum_probs=57.3

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc----C-------------------CCCCCcEEE
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD----Q-------------------THSNALLLH   61 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~----~-------------------s~~~n~ILL   61 (94)
                      .|+.|||||++.++|..++..+...  .+.|+++.+.++....-...    +                   ...|+++|.
T Consensus       336 ~~g~afv~f~~~~~a~~A~~~l~g~--~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~  413 (509)
T TIGR01642       336 SKGYAFCEYKDPSVTDVAIAALNGK--DTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQ  413 (509)
T ss_pred             cCeEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEE
Confidence            4788999999999999999877655  68999999999764321110    0                   012456665


Q ss_pred             EEEcccCCc----------eeHhHHHhhhccccceEEEE
Q psy9170          62 LTIGIILRP----------ATHYQVHLIRSACQVYLIVC   90 (94)
Q Consensus        62 ~TI~n~~yp----------Itvdvlh~i~s~~g~~~~v~   90 (94)
                      +  .|+.++          -+.+-|...|++||.++-|-
T Consensus       414 l--~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~  450 (509)
T TIGR01642       414 L--TNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIV  450 (509)
T ss_pred             e--ccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEE
Confidence            3  466543          33467899999999876654

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0131|consensus

Probab=97.28  E-value=0.00047  Score=50.85  Aligned_cols=74  Identities=19%  Similarity=0.156  Sum_probs=55.8

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQ   84 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g   84 (94)
                      .+.-||+||.++|+|.-+++-..  .+.+.|||++++-+.  ..+.+ .....+   +-|.|.---|.-++||.+||+||
T Consensus        50 ~qGygF~Ef~~eedadYAikiln--~VkLYgrpIrv~kas--~~~~n-l~vgan---lfvgNLd~~vDe~~L~dtFsafG  121 (203)
T KOG0131|consen   50 HQGYGFAEFRTEEDADYAIKILN--MVKLYGRPIRVNKAS--AHQKN-LDVGAN---LFVGNLDPEVDEKLLYDTFSAFG  121 (203)
T ss_pred             ccceeEEEEechhhhHHHHHHHH--HHHhcCceeEEEecc--ccccc-cccccc---ccccccCcchhHHHHHHHHHhcc
Confidence            34568999999999999988887  568899999998776  11111 111111   23788888899999999999999


Q ss_pred             ce
Q psy9170          85 VY   86 (94)
Q Consensus        85 ~~   86 (94)
                      +.
T Consensus       122 ~l  123 (203)
T KOG0131|consen  122 VL  123 (203)
T ss_pred             cc
Confidence            65

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=97.20  E-value=0.0035  Score=47.47  Aligned_cols=42  Identities=12%  Similarity=0.174  Sum_probs=33.8

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      .|..|||||++.++|..+++-+......-+++++.+.+++..
T Consensus       130 ~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~  171 (352)
T TIGR01661       130 SKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNP  171 (352)
T ss_pred             cCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCC
Confidence            467899999999999999998877655445678889887643

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=97.19  E-value=0.0022  Score=54.11  Aligned_cols=84  Identities=13%  Similarity=0.065  Sum_probs=59.5

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc-----CCCCCCcEEEEEEcccCCceeHhHHHh
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD-----QTHSNALLLHLTIGIILRPATHYQVHL   78 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~-----~s~~~n~ILL~TI~n~~ypItvdvlh~   78 (94)
                      +.|..|||||++.++|..++.....  ..+.||++.++.+....-..+     .... ...--+=|.|.-..++-|-|..
T Consensus       147 kskGfAFVeF~s~e~A~~Ai~~lnG--~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~-~~~~rLfVgnLp~~vteedLk~  223 (612)
T TIGR01645       147 KHKGFAFVEYEVPEAAQLALEQMNG--QMLGGRNIKVGRPSNMPQAQPIIDMVQEEA-KKFNRIYVASVHPDLSETDIKS  223 (612)
T ss_pred             CcCCeEEEEeCcHHHHHHHHHhcCC--eEEecceeeecccccccccccccccccccc-cccceEEeecCCCCCCHHHHHH
Confidence            4688999999999999999988754  478999999986543211000     0000 1111244678888899999999


Q ss_pred             hhccccceEEEE
Q psy9170          79 IRSACQVYLIVC   90 (94)
Q Consensus        79 i~s~~g~~~~v~   90 (94)
                      +|++||.+.-+-
T Consensus       224 lFs~FG~I~svr  235 (612)
T TIGR01645       224 VFEAFGEIVKCQ  235 (612)
T ss_pred             HHhhcCCeeEEE
Confidence            999999876543

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>PF14259 RRM_6: RNA recognition motif (a

Probab=96.98  E-value=0.0015  Score=38.59  Aligned_cols=32  Identities=22%  Similarity=0.302  Sum_probs=28.4

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEE
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVY   39 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vy   39 (94)
                      ++.|||||.+.++|.++.+.+.  ...++|++|+
T Consensus        39 ~~~a~v~f~~~~~a~~al~~~~--~~~~~g~~l~   70 (70)
T PF14259_consen   39 RGFAFVEFSSEEDAKRALELLN--GKEIDGRKLR   70 (70)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHT--TEEETTEEEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHCC--CcEECCEEcC
Confidence            6899999999999999999975  5689999875

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=96.20  E-value=0.014  Score=40.37  Aligned_cols=41  Identities=24%  Similarity=0.340  Sum_probs=34.7

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      +.|.-|||||++.|+|..+++.+...  .|.|+++.+.+.+.+
T Consensus        74 ~~kGfaFV~F~~~e~A~~Al~~lng~--~i~Gr~l~V~~a~~~  114 (144)
T PLN03134         74 RSRGFGFVNFNDEGAATAAISEMDGK--ELNGRHIRVNPANDR  114 (144)
T ss_pred             CcceEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEeCCcC
Confidence            34778999999999999999876544  899999999988753

>KOG0148|consensus

Probab=96.20  E-value=0.037  Score=43.26  Aligned_cols=84  Identities=14%  Similarity=0.073  Sum_probs=62.8

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec-------c---CCCCCCcEEEEEEcccCCceeH
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT-------D---QTHSNALLLHLTIGIILRPATH   73 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~-------~---~s~~~n~ILL~TI~n~~ypItv   73 (94)
                      |.|..+||.|...++|.+++....-.  .|.+|.|.-+.+++|--..       +   +.++|.+-- |=+.|.---+|=
T Consensus       102 KsKGYgFVSf~~k~dAEnAI~~MnGq--WlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~Nts-VY~G~I~~~lte  178 (321)
T KOG0148|consen  102 KSKGYGFVSFPNKEDAENAIQQMNGQ--WLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTS-VYVGNIASGLTE  178 (321)
T ss_pred             cccceeEEeccchHHHHHHHHHhCCe--eeccceeeccccccCccccCCCCccHHHHhccCCCCCce-EEeCCcCccccH
Confidence            67899999999999999999986644  9999999999999875222       1   122333321 234566557999


Q ss_pred             hHHHhhhccccceEEEE
Q psy9170          74 YQVHLIRSACQVYLIVC   90 (94)
Q Consensus        74 dvlh~i~s~~g~~~~v~   90 (94)
                      |.||+-||+||++-=|=
T Consensus       179 ~~mr~~Fs~fG~I~EVR  195 (321)
T KOG0148|consen  179 DLMRQTFSPFGPIQEVR  195 (321)
T ss_pred             HHHHHhcccCCcceEEE
Confidence            99999999999765543

>KOG4206|consensus

Probab=96.15  E-value=0.022  Score=42.87  Aligned_cols=83  Identities=17%  Similarity=0.143  Sum_probs=60.7

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce-e-eecc-----------------------------
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK-E-LKTD-----------------------------   51 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~-e-L~~~-----------------------------   51 (94)
                      +|.++||||-|.+.++|+.+......-  -.-|+++.+||++.+ . +++.                             
T Consensus        49 ~KmRGQA~VvFk~~~~As~A~r~l~gf--pFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~  126 (221)
T KOG4206|consen   49 PKMRGQAFVVFKETEAASAALRALQGF--PFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHF  126 (221)
T ss_pred             CCccCceEEEecChhHHHHHHHHhcCC--cccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccc
Confidence            567899999999999999999865544  346999999999863 2 2220                             


Q ss_pred             --------------CCCCCCcEEEEEEcccCCceeHhHHHhhhccc-cceEEE
Q psy9170          52 --------------QTHSNALLLHLTIGIILRPATHYQVHLIRSAC-QVYLIV   89 (94)
Q Consensus        52 --------------~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~-g~~~~v   89 (94)
                                    ....||+||++|  |.---.+-++|-.+|..| |-..|.
T Consensus       127 ~~~~~~~~p~p~~~~~~ppn~ilf~~--niP~es~~e~l~~lf~qf~g~keir  177 (221)
T KOG4206|consen  127 YNMNRMNLPPPFLAQMAPPNNILFLT--NIPSESESEMLSDLFEQFPGFKEIR  177 (221)
T ss_pred             cccccccCCCCccccCCCCceEEEEe--cCCcchhHHHHHHHHhhCcccceeE
Confidence                          013568888864  666668899999999998 444433

>KOG0110|consensus

Probab=96.13  E-value=0.026  Score=48.46  Aligned_cols=78  Identities=19%  Similarity=0.194  Sum_probs=58.3

Q ss_pred             ceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee---eeccCCC-C-CCcEEEEEEcccCCceeHhHHHhhhc
Q psy9170           7 IQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE---LKTDQTH-S-NALLLHLTIGIILRPATHYQVHLIRS   81 (94)
Q Consensus         7 nQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e---L~~~~s~-~-~n~ILL~TI~n~~ypItvdvlh~i~s   81 (94)
                      .-|||||.+.|+|.++....+-.  .|.|+.+++++|-.+.   .....+. . -++||   |-|.-|--|.--+-++|+
T Consensus       561 GfgFVEF~~~e~A~~a~k~lqgt--vldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIl---VRNipFeAt~rEVr~LF~  635 (725)
T KOG0110|consen  561 GFGFVEFAKPESAQAALKALQGT--VLDGHKLELKISENKPASTVGKKKSKKKKGTKIL---VRNIPFEATKREVRKLFT  635 (725)
T ss_pred             ceeEEEecCHHHHHHHHHHhcCc--eecCceEEEEeccCccccccccccccccccceee---eeccchHHHHHHHHHHHh
Confidence            67999999999999988876633  7899999999998110   0001111 1 14555   478889999999999999


Q ss_pred             cccceEEE
Q psy9170          82 ACQVYLIV   89 (94)
Q Consensus        82 ~~g~~~~v   89 (94)
                      +||-.+-|
T Consensus       636 aFGqlksv  643 (725)
T KOG0110|consen  636 AFGQLKSV  643 (725)
T ss_pred             cccceeee
Confidence            99977655

>smart00362 RRM_2 RNA recognition motif

Probab=95.68  E-value=0.035  Score=31.10  Aligned_cols=33  Identities=27%  Similarity=0.361  Sum_probs=27.4

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEE
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYV   40 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyi   40 (94)
                      ++.||+||.+.++|..+++.+..  ..+.|+++.+
T Consensus        39 ~~~~~v~f~~~~~a~~a~~~~~~--~~~~~~~i~v   71 (72)
T smart00362       39 KGFAFVEFESEEDAEKAIEALNG--TKLGGRPLRV   71 (72)
T ss_pred             CceEEEEeCCHHHHHHHHHHhCC--cEECCEEEee
Confidence            58999999999999999887654  4678888765

>smart00360 RRM RNA recognition motif

Probab=95.64  E-value=0.032  Score=31.07  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=26.7

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEE
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYV   40 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyi   40 (94)
                      +..||++|.+.++|..+++-+..  ..+.|+++.+
T Consensus        38 ~~~a~v~f~~~~~a~~a~~~~~~--~~~~~~~~~v   70 (71)
T smart00360       38 KGFAFVEFESEEDAEKALEALNG--KELDGRPLKV   70 (71)
T ss_pred             CceEEEEeCCHHHHHHHHHHcCC--CeeCCcEEEe
Confidence            56999999999999999886663  3567887765

>PF00076 RRM_1: RNA recognition motif

Probab=95.30  E-value=0.039  Score=31.71  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=27.4

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEE
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAV   38 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~v   38 (94)
                      +.+.-|||+|++.++|..+++.+...  .+.|+++
T Consensus        37 ~~~~~a~V~F~~~~~a~~a~~~l~g~--~~~~~~i   69 (70)
T PF00076_consen   37 KSKGYAFVEFESEEDAEKALEELNGK--KINGRKI   69 (70)
T ss_dssp             SEEEEEEEEESSHHHHHHHHHHHTTE--EETTEEE
T ss_pred             cccceEEEEEcCHHHHHHHHHHcCCC--EECccCc
Confidence            34678999999999999999987764  7777765

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>smart00361 RRM_1 RNA recognition motif

Probab=94.97  E-value=0.077  Score=31.90  Aligned_cols=35  Identities=11%  Similarity=0.158  Sum_probs=28.9

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEE
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYV   40 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyi   40 (94)
                      +.|.-|||+|++.++|..++......  .+.|+++.+
T Consensus        35 ~~rG~~fV~f~~~~dA~~A~~~l~g~--~~~gr~l~~   69 (70)
T smart00361       35 HKRGNVYITFERSEDAARAIVDLNGR--YFDGRTVKA   69 (70)
T ss_pred             CCcEEEEEEECCHHHHHHHHHHhCCC--EECCEEEEe
Confidence            45677999999999999999987655  788888754

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=94.80  E-value=0.093  Score=29.42  Aligned_cols=35  Identities=31%  Similarity=0.420  Sum_probs=29.5

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEe
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQF   42 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqy   42 (94)
                      +..|+++|.+.++|..+++.....  .+.|+++.+++
T Consensus        40 ~~~~~v~f~s~~~a~~a~~~~~~~--~~~~~~~~v~~   74 (74)
T cd00590          40 KGFAFVEFEDEEDAEKALEALNGK--ELGGRPLRVEF   74 (74)
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEeC
Confidence            678999999999999999987765  47888887764

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>KOG0117|consensus

Probab=94.50  E-value=0.099  Score=43.16  Aligned_cols=83  Identities=17%  Similarity=0.143  Sum_probs=66.0

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQ   84 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g   84 (94)
                      ++.=||||++|-.+|.....-.......+-|..+.|..-.+++=-..++-  ++|-.+=|-|..-.+|-|.|-..|+.||
T Consensus       207 NRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~m--s~VKvLYVRNL~~~tTeE~lk~~F~~~G  284 (506)
T KOG0117|consen  207 NRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTM--SKVKVLYVRNLMESTTEETLKKLFNEFG  284 (506)
T ss_pred             ccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhh--hheeeeeeeccchhhhHHHHHHHHHhcc
Confidence            34458999999999988888888777888899999998877654333323  4455556789999999999999999999


Q ss_pred             ceEEE
Q psy9170          85 VYLIV   89 (94)
Q Consensus        85 ~~~~v   89 (94)
                      .+.+|
T Consensus       285 ~veRV  289 (506)
T KOG0117|consen  285 KVERV  289 (506)
T ss_pred             ceEEe
Confidence            76665

>KOG0123|consensus

Probab=93.97  E-value=0.24  Score=39.43  Aligned_cols=71  Identities=13%  Similarity=0.074  Sum_probs=57.8

Q ss_pred             ceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhccccce
Q psy9170           7 IQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQVY   86 (94)
Q Consensus         7 nQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~   86 (94)
                      ..|++.|.+.++|.+++.-+...  .+.|+++.+-.|.+.--.            +=|-|--=.||.+.||-.||.||.+
T Consensus        38 gy~yvnf~~~~da~~A~~~~n~~--~~~~~~~rim~s~rd~~~------------~~i~nl~~~~~~~~~~d~f~~~g~i  103 (369)
T KOG0123|consen   38 GYAYVNFQQPADAERALDTMNFD--VLKGKPIRIMWSQRDPSL------------VFIKNLDESIDNKSLYDTFSEFGNI  103 (369)
T ss_pred             ceEEEecCCHHHHHHHHHHcCCc--ccCCcEEEeehhccCCce------------eeecCCCcccCcHHHHHHHHhhcCe
Confidence            46999999999999999887655  789999999988753221            5667777779999999999999988


Q ss_pred             EEEEE
Q psy9170          87 LIVCV   91 (94)
Q Consensus        87 ~~v~~   91 (94)
                      +=+=|
T Consensus       104 lS~kv  108 (369)
T KOG0123|consen  104 LSCKV  108 (369)
T ss_pred             eEEEE
Confidence            75543

>KOG0107|consensus

Probab=93.23  E-value=0.099  Score=38.53  Aligned_cols=38  Identities=26%  Similarity=0.367  Sum_probs=33.9

Q ss_pred             ceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           7 IQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         7 nQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      .-|||||+|.-+|..++.+..-.  .|.|..+-|..|+-+
T Consensus        48 GfAFVEFed~RDA~DAvr~LDG~--~~cG~r~rVE~S~G~   85 (195)
T KOG0107|consen   48 GFAFVEFEDPRDAEDAVRYLDGK--DICGSRIRVELSTGR   85 (195)
T ss_pred             CceEEeccCcccHHHHHhhcCCc--cccCceEEEEeecCC
Confidence            35999999999999999999877  788999999999864

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=92.59  E-value=0.28  Score=38.63  Aligned_cols=39  Identities=18%  Similarity=0.303  Sum_probs=33.5

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN   44 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~   44 (94)
                      +.|..|||||.+.++|..++.....  ..+.|+++.|.|..
T Consensus       226 ~~~g~afV~f~~~e~A~~A~~~l~g--~~i~g~~i~v~~a~  264 (457)
T TIGR01622       226 RSKGFGFIQFHDAEEAKEALEVMNG--FELAGRPIKVGYAQ  264 (457)
T ss_pred             ccceEEEEEECCHHHHHHHHHhcCC--cEECCEEEEEEEcc
Confidence            3467899999999999999987765  58899999999954

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>KOG0123|consensus

Probab=92.52  E-value=0.34  Score=38.55  Aligned_cols=84  Identities=17%  Similarity=0.192  Sum_probs=57.4

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce-eeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK-ELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQ   84 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~-eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g   84 (94)
                      |.- ||||+++++|..+++-+...  .+.|+++|+---..+ +...+......+.=.+.+.|-.-.+|-+-|...|+.+|
T Consensus       116 kg~-FV~f~~e~~a~~ai~~~ng~--ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g  192 (369)
T KOG0123|consen  116 KGY-FVQFESEESAKKAIEKLNGM--LLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYG  192 (369)
T ss_pred             eee-EEEeCCHHHHHHHHHHhcCc--ccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccC
Confidence            445 99999999999999966544  899999999654443 32222211112233334444446788889999999999


Q ss_pred             ceEEEEEE
Q psy9170          85 VYLIVCVL   92 (94)
Q Consensus        85 ~~~~v~~~   92 (94)
                      .+.=+.|.
T Consensus       193 ~i~s~~v~  200 (369)
T KOG0123|consen  193 SITSVAVM  200 (369)
T ss_pred             cceEEEEe
Confidence            88766553

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=91.62  E-value=0.45  Score=32.55  Aligned_cols=83  Identities=18%  Similarity=0.139  Sum_probs=57.4

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc----e-eeec--c----------CCCCCCcEEEEEEcc
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH----K-ELKT--D----------QTHSNALLLHLTIGI   66 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~----~-eL~~--~----------~s~~~n~ILL~TI~n   66 (94)
                      +.|..|||+|++.++|..++....  ...+.|+++.++....    + +...  .          .......--...+.|
T Consensus       155 ~~~g~~~v~f~~~~~~~~a~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (306)
T COG0724         155 KSRGFAFVEFESEESAEKAIEELN--GKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGN  232 (306)
T ss_pred             ccCceEEEEecCHHHHHHHHHHcC--CCeECCceeEeeccccccccccccccccchhhhccccccccccccccceeeccc
Confidence            457899999999999999999987  4589999999999542    1 1110  0          001112233345667


Q ss_pred             cCCceeHhHHHhhhccccceEE
Q psy9170          67 ILRPATHYQVHLIRSACQVYLI   88 (94)
Q Consensus        67 ~~ypItvdvlh~i~s~~g~~~~   88 (94)
                      .....+.+-+-..|..+|...-
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~  254 (306)
T COG0724         233 LPLKTAEEELADLFKSRGDIVR  254 (306)
T ss_pred             cccccchhHHHHhcccccccee
Confidence            7777888888888888886643

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=90.63  E-value=0.52  Score=37.12  Aligned_cols=41  Identities=10%  Similarity=0.198  Sum_probs=33.4

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |.-|||||++.++|..+++.+....+.-+++++.+.+...+
T Consensus       235 kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~  275 (346)
T TIGR01659       235 RGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH  275 (346)
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence            56899999999999999999886644445688888887753

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=90.44  E-value=0.61  Score=39.38  Aligned_cols=78  Identities=13%  Similarity=0.026  Sum_probs=53.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee------cc-----C-----------CCCCCcEEEEE
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK------TD-----Q-----------THSNALLLHLT   63 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~------~~-----~-----------s~~~n~ILL~T   63 (94)
                      |.-|||||++.++|..++......  .+.|+++.+.+++...=+      +.     .           ..+|. ---.-
T Consensus       269 rgfAFVeF~s~e~A~kAi~~lnG~--~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~-s~~~~  345 (578)
T TIGR01648       269 RDYAFVHFEDREDAVKAMDELNGK--ELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPA-SRSLA  345 (578)
T ss_pred             cCeEEEEeCCHHHHHHHHHHhCCC--EECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCcc-ccccc
Confidence            568999999999999999876644  899999999999754222      00     0           00110 11123


Q ss_pred             EcccCCceeHhHHHhhhccccce
Q psy9170          64 IGIILRPATHYQVHLIRSACQVY   86 (94)
Q Consensus        64 I~n~~ypItvdvlh~i~s~~g~~   86 (94)
                      +.|.-|+-+-|-++..|..+|.+
T Consensus       346 ~g~~~~~~~~~~~~~~f~~~g~~  368 (578)
T TIGR01648       346 YEDYYYHPPYAPSLHFPRMPGPI  368 (578)
T ss_pred             cccccccccccchhhccccCccc
Confidence            44666777888899999988853

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG1456|consensus

Probab=90.23  E-value=0.54  Score=38.48  Aligned_cols=49  Identities=10%  Similarity=0.145  Sum_probs=39.7

Q ss_pred             CCCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           2 YDYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         2 ~~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      |.|+--||+|||++.+.|+++.......-++-.=.++.|.|-+-.+|.-
T Consensus       155 fkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV  203 (494)
T KOG1456|consen  155 FKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNV  203 (494)
T ss_pred             EeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeee
Confidence            4566679999999999999999887766555556688999998887753

>KOG0111|consensus

Probab=88.92  E-value=0.61  Score=35.87  Aligned_cols=46  Identities=17%  Similarity=0.318  Sum_probs=38.7

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD   51 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~   51 (94)
                      |.+.=|||||+..|+|.++++-....  .+.||.+.++|.+-.+++-.
T Consensus        50 kHRgFgFVefe~aEDAaaAiDNMnes--EL~GrtirVN~AkP~kikeg   95 (298)
T KOG0111|consen   50 KHRGFGFVEFEEAEDAAAAIDNMNES--ELFGRTIRVNLAKPEKIKEG   95 (298)
T ss_pred             cccceeEEEeeccchhHHHhhcCchh--hhcceeEEEeecCCccccCC
Confidence            34566999999999999998876655  88999999999998888764

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=88.10  E-value=1.2  Score=37.99  Aligned_cols=40  Identities=15%  Similarity=0.105  Sum_probs=34.7

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      +.|.-|||||++.++|..+++....-  .+.|+.+.+.++..
T Consensus       244 ksKGfGFVeFe~~e~A~kAI~amNg~--elgGr~LrV~kAi~  283 (612)
T TIGR01645       244 GHKGYGFIEYNNLQSQSEAIASMNLF--DLGGQYLRVGKCVT  283 (612)
T ss_pred             CcCCeEEEEECCHHHHHHHHHHhCCC--eeCCeEEEEEecCC
Confidence            35779999999999999999987754  88999999998774

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG0109|consensus

Probab=87.38  E-value=1  Score=35.64  Aligned_cols=71  Identities=18%  Similarity=0.211  Sum_probs=52.6

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQ   84 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g   84 (94)
                      =||-|||-+||...|..++.-..--  .|+|..|-|.=|+.+.-.+.+         .-+.|...--|-+-|-.-|.+||
T Consensus        35 vKNYgFVHiEdktaaedairNLhgY--tLhg~nInVeaSksKsk~stk---------l~vgNis~tctn~ElRa~fe~yg  103 (346)
T KOG0109|consen   35 VKNYGFVHIEDKTAAEDAIRNLHGY--TLHGVNINVEASKSKSKASTK---------LHVGNISPTCTNQELRAKFEKYG  103 (346)
T ss_pred             ecccceEEeecccccHHHHhhcccc--eecceEEEEEeccccCCCccc---------cccCCCCccccCHHHhhhhcccC
Confidence            3899999999999998877633332  789999999999887221111         13566677778888999999998


Q ss_pred             ce
Q psy9170          85 VY   86 (94)
Q Consensus        85 ~~   86 (94)
                      ++
T Consensus       104 pv  105 (346)
T KOG0109|consen  104 PV  105 (346)
T ss_pred             Cc
Confidence            54

>KOG0121|consensus

Probab=84.60  E-value=0.93  Score=32.17  Aligned_cols=30  Identities=23%  Similarity=0.157  Sum_probs=24.8

Q ss_pred             EEcccCCceeHhHHHhhhccccceE-EEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYL-IVCVL   92 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~-~v~~~   92 (94)
                      =|.|..+-.|-|-||.+||+||.++ |||=|
T Consensus        40 yVgNlSfyttEEqiyELFs~cG~irriiMGL   70 (153)
T KOG0121|consen   40 YVGNLSFYTTEEQIYELFSKCGDIRRIIMGL   70 (153)
T ss_pred             EEeeeeeeecHHHHHHHHHhccchheeEecc
Confidence            5789999999999999999999654 55533

>KOG4208|consensus

Probab=81.35  E-value=2.2  Score=32.03  Aligned_cols=36  Identities=17%  Similarity=0.118  Sum_probs=22.2

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEe
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQF   42 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqy   42 (94)
                      .|+-|||||++.|-|.=+-.-...  =.+-|+-+.+.|
T Consensus        91 SKgYAFVEFEs~eVA~IaAETMNN--YLl~e~lL~c~v  126 (214)
T KOG4208|consen   91 SKGYAFVEFESEEVAKIAAETMNN--YLLMEHLLECHV  126 (214)
T ss_pred             cCceEEEEeccHHHHHHHHHHhhh--hhhhhheeeeEE
Confidence            478999999999987533222211  145555555555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	94
1sjq_A	105	Nmr Structure Of Rrm1 From Human Polypyrimidine Tra		7e-13
2ad9_A	119	Solution Structure Of Polypyrimidine Tract Binding		7e-13
2cq1_A	101	Solution Structure Of Rna Binding Domain In Ptb-Lik		5e-10

>pdb|1SJQ|A Chain A, Nmr Structure Of Rrm1 From Human Polypyrimidine Tract Binding Protein Isoform 1 (Ptb1) Length = 105

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNA 57
           QAF+EM  E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD + + A
Sbjct: 54  QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQA 103

>pdb|2AD9|A Chain A, Solution Structure Of Polypyrimidine Tract Binding Protein Rbd1 Complexed With Cucucu Rna Length = 119

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNA 57
           QAF+EM  E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD + + A
Sbjct: 69  QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQA 118

>pdb|2CQ1|A Chain A, Solution Structure Of Rna Binding Domain In Ptb-Like Protein L Length = 101

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSN 56
           QAFLE+A E AA TMV Y++     LR + +Y+Q+SNHKELKT    S 
Sbjct: 53  QAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTSGPSSG 101

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	94
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	2e-17
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	2e-16
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	3e-16
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	8e-16
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	2e-15
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	3e-14
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	2e-12

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 101

 Score = 69.9 bits (171), Expect = 2e-17
 Identities = 26/48 (54%), Positives = 33/48 (68%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHS 55
           QAFLE+A E AA TMV Y++     LR + +Y+Q+SNHKELKT    S
Sbjct: 53  QAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTSGPSS 100

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 119

 Score = 67.6 bits (165), Expect = 2e-16
 Identities = 29/50 (58%), Positives = 38/50 (76%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNA 57
           QAF+EM  E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD + + A
Sbjct: 69  QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQA 118

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 102

 Score = 66.8 bits (163), Expect = 3e-16
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN-HKELKTDQTH 54
           +AF+EMA    A   V Y+TT  A + G+ V V  S  +K +K+  + 
Sbjct: 54  EAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKSGPSS 101

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 112

 Score = 65.7 bits (160), Expect = 8e-16
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN-HKELKTDQTH 54
           QAF+EM     A  MV +        +GR V V  S  +K+L +  + 
Sbjct: 64  QAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLVSGPSS 111

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105

 Score = 64.9 bits (158), Expect = 2e-15
 Identities = 29/50 (58%), Positives = 38/50 (76%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNA 57
           QAF+EM  E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD + + A
Sbjct: 54  QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQA 103

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Length = 104

 Score = 61.7 bits (150), Expect = 3e-14
 Identities = 9/48 (18%), Positives = 18/48 (37%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHS 55
           QA +E  +  +A   VT+       + G+  +  +S  K +       
Sbjct: 53  QALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNSG 100

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} Length = 100

 Score = 56.7 bits (137), Expect = 2e-12
 Identities = 10/41 (24%), Positives = 17/41 (41%)

Query: 8  QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48
          QA +E  D   A   V Y       + G   +V +S  +++
Sbjct: 59 QALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKI 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	94
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	99.32
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	98.91
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.91
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	98.87
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	98.86
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.83
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	98.8
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	98.63
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.53
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	98.52
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.49
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	98.48
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	98.47
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	98.46
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	98.45
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	98.44
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	98.37
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.29
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	98.29
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	98.28
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	98.28
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	98.24
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	98.2
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	98.2
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	98.16
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	98.15
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	98.14
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	97.96
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	97.89
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	97.89
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	97.75
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	97.73
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	97.72
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	97.49
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	97.47
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	97.45
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	97.42
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	97.39
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	97.39
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	97.39
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	97.38
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	97.38
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	97.36
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	97.34
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	97.33
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	97.33
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	97.32
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	97.32
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	97.32
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	97.32
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	97.3
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	97.26
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	97.24
1x5p_A	97	Negative elongation factor E; structure genomics,	97.23
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	97.23
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	97.22
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	97.21
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	97.2
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	97.2
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	97.19
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	97.19
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	97.19
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	97.18
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	97.18
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	97.17
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	97.17
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	97.17
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	97.17
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	97.16
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	97.16
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	97.16
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	97.15
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	97.15
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	97.15
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	97.14
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	97.14
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	97.13
2dis_A	109	Unnamed protein product; structural genomics, RRM	97.13
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	97.13
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	97.12
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	97.12
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	97.11
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	97.1
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	97.1
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	97.1
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	97.1
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	97.09
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	97.09
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	97.09
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	97.09
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	97.08
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	97.06
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	97.06
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	97.06
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	97.06
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	97.05
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	97.05
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	97.05
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	97.04
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	97.04
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	97.03
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	97.03
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	97.02
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	97.02
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	97.02
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	97.01
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	97.01
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	97.0
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	96.99
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	96.99
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	96.98
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	96.97
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	96.96
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	96.96
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	96.95
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	96.94
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	96.93
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	96.91
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	96.9
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	96.9
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	96.85
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	96.84
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	96.82
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	96.82
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	96.82
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	96.81
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	96.8
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	96.79
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	96.79
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	96.78
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	96.77
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	96.77
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	96.76
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	96.75
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	96.75
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	96.75
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	96.73
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	96.73
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	96.72
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	96.72
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	96.71
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	96.7
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	96.67
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	96.63
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	96.63
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	96.62
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	96.62
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	96.6
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	96.59
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	96.59
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	96.58
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	96.57
2div_A	99	TRNA selenocysteine associated protein; structural	96.54
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	96.54
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	96.53
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	96.53
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	96.52
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	96.51
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	96.49
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	96.48
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	96.46
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	96.46
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	96.43
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	96.42
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	96.42
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	96.41
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	96.41
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	96.4
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	96.39
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	96.38
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	95.34
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	96.31
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	96.28
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	96.28
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	96.26
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	96.24
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	96.16
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	96.12
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	96.11
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	96.11
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	96.11
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	96.08
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	96.03
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	96.01
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	95.98
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	95.97
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	95.96
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	95.95
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	95.92
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	95.86
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	95.82
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	95.78
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	95.63
1x4e_A	85	RNA binding motif, single-stranded interacting pro	95.63
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	95.33
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	95.3
1x5o_A	114	RNA binding motif, single-stranded interacting pro	95.29
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	95.25
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	95.04
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	94.97
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	94.94
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	94.85
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	94.78
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	94.6
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	94.13
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	94.08
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	93.6
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	93.59
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	93.24
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	92.38
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	92.32
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	92.16
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	91.18
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	90.27
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	89.79
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	89.52
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	89.14
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	87.47
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	87.12
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	85.36
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	85.32
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	84.97
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	84.6
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	84.07
1x4e_A	85	RNA binding motif, single-stranded interacting pro	83.87
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	83.85
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	83.8
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	83.73
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	83.48
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	83.43
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	83.12
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	83.01
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	82.99
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	82.77
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	82.59
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	82.42
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	82.28
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	82.2
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	82.06
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	81.84
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	81.74
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	81.66
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	81.59
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	81.41
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	81.37
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	81.13
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	80.95
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	80.84
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	80.76
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	80.51
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	80.39
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	80.34

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=99.32  E-value=2e-12  Score=84.51  Aligned_cols=47  Identities=21%  Similarity=0.340  Sum_probs=44.2

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK   49 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~   49 (94)
                      .+.|++|||||+|.++|.++++++...++.++|++++++||+++||+
T Consensus        54 ~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~l~  100 (100)
T 3r27_A           54 MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKIS  100 (100)
T ss_dssp             ETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSCCC
T ss_pred             EcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccccC
Confidence            35789999999999999999999999999999999999999999985

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.91  E-value=1.9e-09  Score=69.56  Aligned_cols=49  Identities=51%  Similarity=0.767  Sum_probs=45.4

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccC
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQ   52 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~   52 (94)
                      ++|++|||||++.++|..+++++..++..+.|++++++|++++++++++
T Consensus        49 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~~~   97 (101)
T 2cq1_A           49 KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTSG   97 (101)
T ss_dssp             TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCCCCC
T ss_pred             CCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCcCCC
Confidence            5689999999999999999999988888999999999999999998864

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.91  E-value=1.7e-09  Score=70.21  Aligned_cols=50  Identities=34%  Similarity=0.406  Sum_probs=44.8

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc-ceeeeccC
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN-HKELKTDQ   52 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~-~~eL~~~~   52 (94)
                      .+.|++|||||++.++|..+++++...+..+.|++++|+||+ +++|+.+.
T Consensus        49 ~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~~~~   99 (102)
T 1x4d_A           49 LNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKSGP   99 (102)
T ss_dssp             CSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTTSSCCS
T ss_pred             EcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCCCCCCCC
Confidence            356789999999999999999999988889999999999999 67887754

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.87  E-value=2.2e-09  Score=69.48  Aligned_cols=49  Identities=18%  Similarity=0.263  Sum_probs=45.2

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccC
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQ   52 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~   52 (94)
                      ++|++|||||++.++|..++.++...+..+.|++++++||++++++++.
T Consensus        49 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~~~~   97 (104)
T 1wex_A           49 PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPG   97 (104)
T ss_dssp             TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCCCSC
T ss_pred             CCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccccCCC
Confidence            5689999999999999999999988888899999999999999998864

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.86  E-value=4.4e-09  Score=70.60  Aligned_cols=49  Identities=16%  Similarity=0.121  Sum_probs=42.4

Q ss_pred             ccceeeecc----CCCCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          43 SNHKELKTD----QTHSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        43 S~~~eL~~~----~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      |++|+|+++    .+..|++||++.|.|..|++|.|.||++|++||.++-|-+
T Consensus         5 s~~q~i~~~~~~~~~~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i   57 (124)
T 2e5i_A            5 SSGKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVI   57 (124)
T ss_dssp             CCCCCCCCSCCCCCCCCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCceeeeCCCCCCCCCCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEE
Confidence            899999985    2346899999999999999999999999999997765543

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.83  E-value=2.5e-09  Score=71.46  Aligned_cols=52  Identities=54%  Similarity=0.814  Sum_probs=46.7

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCC
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHS   55 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~   55 (94)
                      ++|++|||||++.++|..+++.+...+..+.|++++++||++++++++++++
T Consensus        65 ~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~~~~~~~  116 (119)
T 2ad9_A           65 KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPN  116 (119)
T ss_dssp             GGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCCCCCCTT
T ss_pred             CCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCCcccccc
Confidence            4589999999999999999999887778899999999999999999876543

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.80  E-value=3e-09  Score=69.80  Aligned_cols=51  Identities=55%  Similarity=0.825  Sum_probs=45.9

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCC
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTH   54 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~   54 (94)
                      ++|++|||||++.++|..++..+..++..+.|++++++||+.+++++.+++
T Consensus        50 ~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~~~~~~  100 (105)
T 1sjq_A           50 KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSP  100 (105)
T ss_dssp             TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCCCTTC-
T ss_pred             cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCCccccc
Confidence            468999999999999999999988778899999999999999999887544

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=98.63  E-value=1.3e-07  Score=67.00  Aligned_cols=78  Identities=21%  Similarity=0.136  Sum_probs=62.5

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccC--------------------------------
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQ--------------------------------   52 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~--------------------------------   52 (94)
                      +|..|||||+|.++|..++......  .+.|+++.+.+|+++.+...+                                
T Consensus        41 ~~g~afV~f~~~~~A~~Ai~~lng~--~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  118 (205)
T 3tyt_A           41 KPGAAMVEMADGYAVDRAITHLNNN--FMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNR  118 (205)
T ss_dssp             STTCEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSC
T ss_pred             CCCEEEEEECCHHHHHHHHHHhCCC--EECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccc
Confidence            4789999999999999999988765  789999999999876542100                                


Q ss_pred             CCCCCcEEEEEEcccCCceeHhHHHhhhccccce
Q psy9170          53 THSNALLLHLTIGIILRPATHYQVHLIRSACQVY   86 (94)
Q Consensus        53 s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~   86 (94)
                      ...|++.|.  |.|.-+.+|-|-|..+|++||.+
T Consensus       119 ~~~p~~~l~--v~NLp~~~t~~~L~~~F~~~G~v  150 (205)
T 3tyt_A          119 IQHPSNVLH--FFNAPLEVTEENFFEICDELGVK  150 (205)
T ss_dssp             CCCCCSEEE--EEEECTTCCHHHHHHHHHHHTCC
T ss_pred             cCCCcceEE--EeCCCCCCCHHHHHHHHHhcCCc
Confidence            012455655  46988999999999999999975

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.53  E-value=6e-08  Score=64.04  Aligned_cols=43  Identities=30%  Similarity=0.292  Sum_probs=39.7

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      +.|++|||||+|.++|..+++++...+..+.|++++++||+.+
T Consensus        60 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~  102 (112)
T 1x4f_A           60 RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY  102 (112)
T ss_dssp             TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred             cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence            5689999999999999999999988888899999999999864

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=98.52  E-value=5.7e-07  Score=58.94  Aligned_cols=77  Identities=10%  Similarity=0.109  Sum_probs=60.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhccccc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQV   85 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~   85 (94)
                      |..|||||++.++|..++..+..  ..+.|+++.+.++..+.-.     .+++-  +-|.|.-+.+|-|-|..+|++||.
T Consensus        44 ~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~v~~~~~~~~~-----~~~~~--l~v~nl~~~~t~~~l~~~f~~~G~  114 (167)
T 1fxl_A           44 LGYGFVNYIDPKDAEKAINTLNG--LRLQTKTIKVSYARPSSAS-----IRDAN--LYVSGLPKTMTQKELEQLFSQYGR  114 (167)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTT--CEETTEECEEEECCCCCGG-----GTTCE--EEEESCCTTCCHHHHHHHHGGGSC
T ss_pred             eeEEEEEECCHHHHHHHHHHcCC--CccCCceEEEEecCCCccc-----CCCCc--EEECCCCCcCCHHHHHHHHHhcCC
Confidence            47899999999999999997765  4789999999999854321     12222  357899999999999999999997


Q ss_pred             eEEEEE
Q psy9170          86 YLIVCV   91 (94)
Q Consensus        86 ~~~v~~   91 (94)
                      +.-+-+
T Consensus       115 i~~~~i  120 (167)
T 1fxl_A          115 IITSRI  120 (167)
T ss_dssp             EEEEEE
T ss_pred             EeEEEE
Confidence            765543

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=98.49  E-value=1.1e-06  Score=57.58  Aligned_cols=81  Identities=14%  Similarity=0.144  Sum_probs=63.5

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQ   84 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g   84 (94)
                      .+..|||||++.++|..++......  .+.|+++.+.++..+.-..   ..++.-|  -|.|.-+.+|-|-|..+|++||
T Consensus        40 ~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i~v~~~~~~~~~~---~~~~~~l--~v~nl~~~~t~~~l~~~f~~~G  112 (166)
T 3md3_A           40 NVNYAFVEYHQSHDANIALQTLNGK--QIENNIVKINWAFQSQQSS---SDDTFNL--FVGDLNVNVDDETLRNAFKDFP  112 (166)
T ss_dssp             CEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCCCCCCC---CTTCEEE--EEESCCTTCCHHHHHHHHTTST
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcCCC--ccCCCeeEEEEcCCCCCCC---CCCCceE--EECCCCCCCCHHHHHHHHhccC
Confidence            3568999999999999999876655  7899999999997654322   2334443  4679889999999999999999


Q ss_pred             ceEEEEEE
Q psy9170          85 VYLIVCVL   92 (94)
Q Consensus        85 ~~~~v~~~   92 (94)
                      .+.-+-+.
T Consensus       113 ~i~~~~i~  120 (166)
T 3md3_A          113 SYLSGHVM  120 (166)
T ss_dssp             TEEEEEEE
T ss_pred             CeeEEEEE
Confidence            87766543

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=98.48  E-value=8.3e-07  Score=58.46  Aligned_cols=77  Identities=13%  Similarity=0.118  Sum_probs=61.1

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhccccc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQV   85 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~   85 (94)
                      |..|||||++.++|..++......  .+.|+++.+.++..+.-     ..+++.|  -|.|.-+.+|-|-|..+|++||.
T Consensus        45 ~g~afV~f~~~~~A~~a~~~l~~~--~~~g~~l~v~~~~~~~~-----~~~~~~l--~v~nl~~~~t~~~l~~~f~~~G~  115 (168)
T 1b7f_A           45 YGYAFVDFTSEMDSQRAIKVLNGI--TVRNKRLKVSYARPGGE-----SIKDTNL--YVTNLPRTITDDQLDTIFGKYGS  115 (168)
T ss_dssp             CSEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCCCSS-----TTTTCEE--EEESCCTTCCHHHHHHHHTSSSC
T ss_pred             ceEEEEEECCHHHHHHHHHhcCCC--EeCCcEEEEEecCCCcc-----cCCCCCE--EEeCCCCCCCHHHHHHhhhcCCc
Confidence            468999999999999999877654  78999999999875432     2233443  46798899999999999999997


Q ss_pred             eEEEEE
Q psy9170          86 YLIVCV   91 (94)
Q Consensus        86 ~~~v~~   91 (94)
                      +.-+-+
T Consensus       116 i~~~~i  121 (168)
T 1b7f_A          116 IVQKNI  121 (168)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            765544

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=98.47  E-value=1.3e-06  Score=59.13  Aligned_cols=83  Identities=16%  Similarity=0.094  Sum_probs=62.2

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccC---------------CCCCCcEEEEEEcccC
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQ---------------THSNALLLHLTIGIIL   68 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~---------------s~~~n~ILL~TI~n~~   68 (94)
                      +.|..|||||++.++|..++ ..  +...+.|+++.++++....-....               ...+.+-|  -|.|.-
T Consensus        49 ~~~g~afV~F~~~~~A~~Al-~l--~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~v~nl~  123 (198)
T 2yh0_A           49 QDKNFAFLEFRSVDETTQAM-AF--DGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKL--FIGGLP  123 (198)
T ss_dssp             TTTTEEEEEESCSHHHHHHG-GG--TTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEE--EEECCC
T ss_pred             CCCCEEEEEeCCHHHHHHHH-Hh--cCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEE--EEeCCC
Confidence            45889999999999999999 33  445799999999998865322110               01233443  467999


Q ss_pred             CceeHhHHHhhhccccceEEEEE
Q psy9170          69 RPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        69 ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      +.+|-+-|..+|++||.+.-|-+
T Consensus       124 ~~~~~~~l~~~f~~~G~v~~~~~  146 (198)
T 2yh0_A          124 NYLNDDQVKELLTSFGPLKAFNL  146 (198)
T ss_dssp             TTCCHHHHHHHHHTBSCEEEEEE
T ss_pred             CCCCHHHHHHHHHHcCCccEEEE
Confidence            99999999999999998765544

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=98.46  E-value=1.8e-06  Score=57.64  Aligned_cols=78  Identities=8%  Similarity=0.038  Sum_probs=62.0

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhccc
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSAC   83 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~   83 (94)
                      +.|..|||||++.++|..+++ .  +...+.|+++.+.++..++-..   ..+++.|  -|.|.-+.+|-+-|..+|++|
T Consensus        52 ~~~g~afV~f~~~~~a~~A~~-l--~g~~~~g~~l~v~~~~~~~~~~---~~~~~~l--~v~nlp~~~t~~~l~~~F~~~  123 (175)
T 1fje_B           52 TNRKFGYVDFESAEDLEKALE-L--TGLKVFGNEIKLEKPKGRDSKK---VRAARTL--LAKNLSFNITEDELKEVFEDA  123 (175)
T ss_dssp             TTTTEEEEEESSHHHHHHHHH-G--GGEEETTEEEEEECCCCSSCST---TGGGGEE--EEESCCSSCCHHHHHHHCTTC
T ss_pred             ccccEEEEEECCHHHHHHHHh-c--CCCEeCCeEEEEecCCCccccc---cccCCEE--EEeCCCCCCCHHHHHHHHHhc
Confidence            457899999999999999995 3  3457889999999998754322   2334444  467998999999999999999


Q ss_pred             cceEEE
Q psy9170          84 QVYLIV   89 (94)
Q Consensus        84 g~~~~v   89 (94)
                      |.+.++
T Consensus       124 g~v~~~  129 (175)
T 1fje_B          124 LEIRLV  129 (175)
T ss_dssp             SEEEEE
T ss_pred             CeEEEe
Confidence            988776

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=98.45  E-value=1.7e-06  Score=57.33  Aligned_cols=78  Identities=15%  Similarity=0.067  Sum_probs=60.5

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhccc
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSAC   83 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~   83 (94)
                      +.|..|||||++.++|..++ .  -+...+.|+++.++++...+-     ..+.+-|  -|.|.-+.+|-|-|..+|++|
T Consensus        49 ~~~g~afV~f~~~~~A~~A~-~--~~~~~~~g~~i~v~~~~~~~~-----~~~~~~l--~v~nlp~~~t~~~l~~~f~~~  118 (172)
T 2g4b_A           49 QDKNFAFLEFRSVDETTQAM-A--FDGIIFQGQSLKIRRPHDYQP-----LPGAHKL--FIGGLPNYLNDDQVKELLTSF  118 (172)
T ss_dssp             TTTTEEEEEESSHHHHHHHG-G--GTTCEETTEECEEECCSSCCC-----CTTTTCE--EEECCCTTCCHHHHHHHHHTT
T ss_pred             CCCCEEEEEeCCHHHHHHHH-H--hCCcEecCceeeecCCcccCC-----CCCCCEE--EEEcCCCcCCHHHHHHHHHhc
Confidence            45889999999999999999 3  344578999999998765432     1222333  367999999999999999999


Q ss_pred             cceEEEEE
Q psy9170          84 QVYLIVCV   91 (94)
Q Consensus        84 g~~~~v~~   91 (94)
                      |.+.-|-+
T Consensus       119 G~v~~v~i  126 (172)
T 2g4b_A          119 GPLKAFNL  126 (172)
T ss_dssp             SCEEEEEE
T ss_pred             CCceEEEE
Confidence            98766544

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=98.44  E-value=1.3e-06  Score=59.06  Aligned_cols=81  Identities=11%  Similarity=0.040  Sum_probs=59.6

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc-CCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD-QTHSNALLLHLTIGIILRPATHYQVHLIRSACQ   84 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~-~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g   84 (94)
                      |..|||||++.++|..+++.   ....+.|+++.+.++..++-... ....+.+.|  -|.|.-+.+|-|-|..+|++||
T Consensus        55 ~g~afV~f~~~~~A~~A~~~---~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l--~V~nLp~~~t~~~l~~~F~~~G  129 (196)
T 1l3k_A           55 RGFGFVTYATVEEVDAAMNA---RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKI--FVGGIKEDTEEHHLRDYFEQYG  129 (196)
T ss_dssp             EEEEEEEESSHHHHHHHHHT---CSCEETTEECEEEECCC-----------CCSEE--EEECCTTTCCHHHHHHHHTTTS
T ss_pred             cceEEEEeCCHHHHHHHHhc---CCCEECCEEeeeecccCcccccccccCCCcceE--EEeCCCCCCCHHHHHHHHhcCC
Confidence            56899999999999999976   45689999999999987654332 222233443  3689889999999999999999


Q ss_pred             ceEEEEE
Q psy9170          85 VYLIVCV   91 (94)
Q Consensus        85 ~~~~v~~   91 (94)
                      .+.-|-+
T Consensus       130 ~i~~v~i  136 (196)
T 1l3k_A          130 KIEVIEI  136 (196)
T ss_dssp             CEEEEEE
T ss_pred             CeEEEEE
Confidence            7765544

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=98.37  E-value=4.8e-07  Score=61.28  Aligned_cols=38  Identities=18%  Similarity=0.207  Sum_probs=32.3

Q ss_pred             CCCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEE
Q psy9170          53 THSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVC   90 (94)
Q Consensus        53 s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~   90 (94)
                      ...||+||++.|.|..|++|.|.||++|++||.++-|-
T Consensus        22 ~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~   59 (130)
T 3zzy_A           22 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKII   59 (130)
T ss_dssp             ---CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEE
T ss_pred             cCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEE
Confidence            35689999999999999999999999999999776653

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=98.29  E-value=4.9e-06  Score=58.74  Aligned_cols=82  Identities=17%  Similarity=0.246  Sum_probs=62.3

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccC------------------------------CCC
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQ------------------------------THS   55 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~------------------------------s~~   55 (94)
                      |..|||||++.++|..+++.....  .+.|+++.++++..+....+.                              ...
T Consensus        72 ~g~afV~F~~~~~A~~Ai~~l~g~--~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (229)
T 2adc_A           72 KENALVQMADGNQAQLAMSHLNGH--KLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFP  149 (229)
T ss_dssp             SCCEEEEESCHHHHHHHHHHHTTC--BCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCC
T ss_pred             CCEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCC
Confidence            678999999999999999977654  679999999999865322110                              012


Q ss_pred             CCcEEEEEEcccCCceeHhHHHhhhcccc-ceEEEEE
Q psy9170          56 NALLLHLTIGIILRPATHYQVHLIRSACQ-VYLIVCV   91 (94)
Q Consensus        56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g-~~~~v~~   91 (94)
                      |++.|.  |.|.-+.+|-+-|..+|++|| .+.-|-+
T Consensus       150 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~~i~~v~i  184 (229)
T 2adc_A          150 PSATLH--LSNIPPSVSEEDLKVLFSSNGGVVKGFKF  184 (229)
T ss_dssp             SCSEEE--EECCCTTCCHHHHHHHHHTTSCCEEEEEE
T ss_pred             CCCEEE--EeCCCccCCHHHHHHHHHHcCCCeeEEEE
Confidence            345554  569888999999999999999 6655443

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=98.29  E-value=2.4e-06  Score=58.25  Aligned_cols=81  Identities=17%  Similarity=0.249  Sum_probs=62.2

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccC------------------------------CCC
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQ------------------------------THS   55 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~------------------------------s~~   55 (94)
                      |..|||||++.++|..++......  .+.|+++.+.++..+....+.                              ...
T Consensus        41 ~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  118 (198)
T 1qm9_A           41 KENALVQMADGNQAQLAMSHLNGH--KLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFP  118 (198)
T ss_dssp             SSCCEEECTTTHHHHHHHHHHTTC--CCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCC
T ss_pred             CCEEEEEECCHHHHHHHHHHhCCC--eecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCC
Confidence            678999999999999999977654  579999999999865322110                              012


Q ss_pred             CCcEEEEEEcccCCceeHhHHHhhhcccc-ceEEEE
Q psy9170          56 NALLLHLTIGIILRPATHYQVHLIRSACQ-VYLIVC   90 (94)
Q Consensus        56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g-~~~~v~   90 (94)
                      |++.|.  |.|.-+.+|-+-|..+|++|| .+.-|-
T Consensus       119 ~~~~l~--v~nl~~~~~~~~l~~~f~~~G~~v~~v~  152 (198)
T 1qm9_A          119 PSATLH--LSNIPPSVSEEDLKVLFSSNGGVVKGFK  152 (198)
T ss_dssp             CCCEEE--ECCCCTTCCHHHHHHHHHHTTSCCCEEE
T ss_pred             CccEEE--EeCCCCCCCHHHHHHHHHHcCCCceEEE
Confidence            355554  679999999999999999999 655443

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=98.28  E-value=6.2e-06  Score=59.18  Aligned_cols=42  Identities=12%  Similarity=0.184  Sum_probs=36.1

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      +.|..|||||++.++|..++.....  ..+.|+++.++|++.+.
T Consensus        50 ~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~v~~a~~~~   91 (282)
T 3pgw_A           50 KMRGQAFVIFKEVSSATNALRSMQG--FPFYDKPMRIQYAKTDS   91 (282)
T ss_pred             CcceEEEEEECCHHHHHHHHHHhcC--CeeCCcEEEEEEeccCc
Confidence            3578999999999999999988765  47899999999997644

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=98.28  E-value=5.9e-06  Score=59.47  Aligned_cols=73  Identities=15%  Similarity=0.127  Sum_probs=60.7

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhccc
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSAC   83 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~   83 (94)
                      +.|+.|||+|++.++|..++......  .+.|+++.+.++...           ..  +-|.|.-+.+|-+-|..+|++|
T Consensus        56 ~~kg~afV~f~~~~~A~~A~~~l~g~--~i~g~~l~v~~a~~~-----------~~--l~v~nl~~~~t~~~l~~~F~~~  120 (261)
T 3sde_A           56 RDRGFGFIRLESRTLAEIAKAELDGT--ILKSRPLRIRFATHG-----------AA--LTVKNLSPVVSNELLEQAFSQF  120 (261)
T ss_dssp             TTTTEEEEECSSHHHHHHHHHHHTTC--EETTEECEEEECCCS-----------SE--EEEESCCTTCCHHHHHHHHGGG
T ss_pred             CCCcEEEEEECCHHHHHHHHHHcCCc--EECCceeEeeecccC-----------Cc--ccccCCCCCCCHHHHHHHHHhc
Confidence            56889999999999999999876644  789999999998641           11  4678999999999999999999


Q ss_pred             cceEEEEE
Q psy9170          84 QVYLIVCV   91 (94)
Q Consensus        84 g~~~~v~~   91 (94)
                      |.+.-|-+
T Consensus       121 G~i~~v~i  128 (261)
T 3sde_A          121 GPVEKAVV  128 (261)
T ss_dssp             SCEEEEEE
T ss_pred             CCeEEEEe
Confidence            98766544

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=98.24  E-value=9e-06  Score=58.36  Aligned_cols=74  Identities=19%  Similarity=0.187  Sum_probs=60.2

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcc
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSA   82 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~   82 (94)
                      .+.|+.|||+|++.++|..++......  .+.|+++.++++..           +..  +-|.|.-+.+|-+-|..+|++
T Consensus        54 ~~~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~i~v~~~~~-----------~~~--l~v~nlp~~~t~~~l~~~f~~  118 (284)
T 3smz_A           54 DKYKGTAFVTLLNGEQAEAAINAFHQS--RLRERELSVQLQPT-----------DAL--LCVANLPPSLTQQQFEELVRP  118 (284)
T ss_dssp             ETTTTEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCC-----------SCE--EEEESCCTTCCHHHHHHHHGG
T ss_pred             ecCCCEEEEEeCCHHHHHHHHHHcCCC--eeCCeEEEEEecCC-----------CCE--EEEcCCCCcCCHHHHHHHHHh
Confidence            356889999999999999999887655  58999999998542           222  346899999999999999999


Q ss_pred             ccceEEEEE
Q psy9170          83 CQVYLIVCV   91 (94)
Q Consensus        83 ~g~~~~v~~   91 (94)
                      ||.+.-+-+
T Consensus       119 ~G~i~~~~i  127 (284)
T 3smz_A          119 FGSLERCFL  127 (284)
T ss_dssp             GSCEEEEEE
T ss_pred             cCCeeEEEE
Confidence            998765544

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=98.20  E-value=3e-06  Score=57.97  Aligned_cols=83  Identities=12%  Similarity=0.054  Sum_probs=61.7

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc------CCCCCCcEEEEEEcccCCceeHhHHHh
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD------QTHSNALLLHLTIGIILRPATHYQVHL   78 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~------~s~~~n~ILL~TI~n~~ypItvdvlh~   78 (94)
                      .|..|||+|++.++|..+++.....  .+.|+++.+.++....-..+      ....+.+.|.  |.|.-+.+|-+-|..
T Consensus        69 ~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~nlp~~~t~~~l~~  144 (216)
T 2qfj_A           69 HKGFAFVEYEVPEAAQLALEQMNSV--MLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIY--VASVHQDLSDDDIKS  144 (216)
T ss_dssp             CCSEEEEEESSHHHHHHHHHHHSSC--CCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEE--EECCCTTCCHHHHHH
T ss_pred             cCceEEEEeCCHHHHHHHHHHccCC--eeCCeeEEEecCCCccccchhhhhhhcccCCCcEEE--EeCCCCcCCHHHHHH
Confidence            4789999999999999999977654  68899999988775432111      0112334443  678889999999999


Q ss_pred             hhccccceEEEEE
Q psy9170          79 IRSACQVYLIVCV   91 (94)
Q Consensus        79 i~s~~g~~~~v~~   91 (94)
                      +|++||.+.-|-+
T Consensus       145 ~f~~~G~v~~v~i  157 (216)
T 2qfj_A          145 VFEAFGKIKSATL  157 (216)
T ss_dssp             HHTTSSCEEEEEE
T ss_pred             HHhccCCeeEEEE
Confidence            9999997766544

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=98.20  E-value=8.2e-06  Score=58.80  Aligned_cols=82  Identities=10%  Similarity=0.033  Sum_probs=61.3

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc--CCCCCCcEEEEEEcccCCc-eeHhHHHhhhc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD--QTHSNALLLHLTIGIILRP-ATHYQVHLIRS   81 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~--~s~~~n~ILL~TI~n~~yp-Itvdvlh~i~s   81 (94)
                      .+..|||+|++.++|..++......  .+.|+++.+.++..+.-...  ....+++.|.  |.|.-+. +|-|-|..+|+
T Consensus       158 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~--v~nlp~~~~t~~~l~~~F~  233 (292)
T 2ghp_A          158 SRRFAYIDVTSKEDARYCVEKLNGL--KIEGYTLVTKVSNPLEKSKRTDSATLEGREIM--IRNLSTELLDENLLRESFE  233 (292)
T ss_dssp             -CCEEEEECSSHHHHHHHHHHHTTC--EETTEECEEEECCCC---------CCTTTEEE--EEEECTTTCCHHHHHHHHG
T ss_pred             cceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEECCCCcccccccccCCCCceEE--EECCCcccCCHHHHHHHHh
Confidence            4678999999999999999977654  78999999999986544322  1234455554  5688888 99999999999


Q ss_pred             cccceEEEE
Q psy9170          82 ACQVYLIVC   90 (94)
Q Consensus        82 ~~g~~~~v~   90 (94)
                      +||.+.-|-
T Consensus       234 ~~G~v~~v~  242 (292)
T 2ghp_A          234 GFGSIEKIN  242 (292)
T ss_dssp             GGSCEEEEE
T ss_pred             ccCCeeEEE
Confidence            999876553

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=98.16  E-value=5.3e-06  Score=54.75  Aligned_cols=82  Identities=11%  Similarity=0.046  Sum_probs=61.3

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCce-EeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcc
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQ-LRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSA   82 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~-irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~   82 (94)
                      +.|..|||||++.++|..++......... -+++++.+.++..+.-..    .+++-  +-|.|.-+.+|-+-|..+|++
T Consensus        45 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--l~v~nl~~~~t~~~l~~~F~~  118 (175)
T 3nmr_A           45 QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNA----VEDRK--LFIGMISKKCTENDIRVMFSS  118 (175)
T ss_dssp             EEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSC----GGGSE--EEEESCCTTCCHHHHHHHHGG
T ss_pred             CcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccccccc----CCCCe--EEEcCCCCcCCHHHHHHHHHh
Confidence            35678999999999999999887654332 347888888887654322    22333  356799999999999999999


Q ss_pred             ccceEEEEE
Q psy9170          83 CQVYLIVCV   91 (94)
Q Consensus        83 ~g~~~~v~~   91 (94)
                      ||.+.-|-+
T Consensus       119 ~G~i~~v~~  127 (175)
T 3nmr_A          119 FGQIEECRI  127 (175)
T ss_dssp             GSCEEEEEE
T ss_pred             CCCEEEEEE
Confidence            998765544

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=98.15  E-value=9e-06  Score=58.36  Aligned_cols=80  Identities=14%  Similarity=0.071  Sum_probs=63.0

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCce-eHhHHHhhhcccc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPA-THYQVHLIRSACQ   84 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypI-tvdvlh~i~s~~g   84 (94)
                      |..|||||++.++|..++......  .+.|+++.+.++..+.....  ..+++.|.  |.|.-+.+ |-|-|..+|++||
T Consensus       137 ~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i~v~~a~~~~~~~~--~~~~~~l~--v~nlp~~~~~~~~l~~~f~~~G  210 (284)
T 3smz_A          137 KGYGFAEYMKKDSAARAKSDLLGK--PLGPRTLYVHWTDAGQLTPA--LLHSRCLC--VDRLPPGFNDVDALCRALSAVH  210 (284)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCGGGCCTT--TTSCSEEE--EECCCTTCCCHHHHHHHTCSSS
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEECCCCCCCcc--cCCccEEE--EecCCcccCCHHHHHHHhhCCC
Confidence            567999999999999999877654  78999999999988765432  23344443  68888887 7899999999999


Q ss_pred             ceEEEEE
Q psy9170          85 VYLIVCV   91 (94)
Q Consensus        85 ~~~~v~~   91 (94)
                      .+.-|-+
T Consensus       211 ~i~~v~i  217 (284)
T 3smz_A          211 SPTFCQL  217 (284)
T ss_dssp             CCSEEEE
T ss_pred             CeEEEEE
Confidence            7655543

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=98.14  E-value=6.9e-06  Score=57.36  Aligned_cols=80  Identities=13%  Similarity=0.059  Sum_probs=62.0

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQ   84 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g   84 (94)
                      .|..|||||++.++|..++......  .+.|+++.+.++....-....  ...+   +-|.|.-+.+|-+-|..+|++||
T Consensus        56 ~~G~afV~F~~~~~A~~Ai~~~~~~--~~~g~~i~~~~~~~~~~~~~~--~~~~---l~v~nl~~~~t~~~l~~~F~~~G  128 (213)
T 4f02_A           56 SLGYAYVNFQQPADAERALDTMNFD--VIKGKPVRIMWSQRDPSLRKS--GVGN---IFIKNLDKSIDNKALYDTFSAFG  128 (213)
T ss_dssp             EEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCCCTHHHHH--CTTE---EEEESCCTTCCHHHHHHHHGGGS
T ss_pred             ccccccceeCCHHHHHHHHHHhhhh--hcCCccccccccccccccccc--cccc---ceECCcccccHHHHHHHHHhhcC
Confidence            3568999999999999999876644  788999999988765433221  2233   34789999999999999999999


Q ss_pred             ceEEEEE
Q psy9170          85 VYLIVCV   91 (94)
Q Consensus        85 ~~~~v~~   91 (94)
                      .+.-|-+
T Consensus       129 ~i~~~~i  135 (213)
T 4f02_A          129 NILSCKV  135 (213)
T ss_dssp             CEEEEEE
T ss_pred             CeEEEEe
Confidence            7766544

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=97.96  E-value=4.6e-06  Score=54.94  Aligned_cols=74  Identities=11%  Similarity=0.047  Sum_probs=57.5

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQ   84 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g   84 (94)
                      .|..|||||++.++|..++..    ...+.|+++.+.++..+.-..     +++-  +-|.|.-+.+|-+-|..+|++||
T Consensus        44 ~~g~afV~f~~~~~a~~A~~~----~~~~~g~~i~v~~~~~~~~~~-----~~~~--l~V~nlp~~~t~~~l~~~F~~~G  112 (167)
T 2cjk_A           44 SRGFGFLSFEKPSSVDEVVKT----QHILDGKVIDPKRAIPRDEQD-----KTGK--IFVGGIGPDVRPKEFEEFFSQWG  112 (167)
T ss_dssp             CCSCEEEEESSTHHHHHHHHS----CCEETTEECCCEECCCHHHHH-----HCEE--EEEEEECTTCCHHHHHHHHHTTS
T ss_pred             ccceEEEEEccHHHHHHHHhc----ccccCCeEcccccccchhhcc-----CCCe--EEECCCCCCCCHHHHHHHHHhCc
Confidence            467899999999999999984    347899999998876543211     1222  35688889999999999999999


Q ss_pred             ceEEE
Q psy9170          85 VYLIV   89 (94)
Q Consensus        85 ~~~~v   89 (94)
                      .+.-|
T Consensus       113 ~i~~~  117 (167)
T 2cjk_A          113 TIIDA  117 (167)
T ss_dssp             CCSEE
T ss_pred             cEEEE
Confidence            76544

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=97.89  E-value=1.5e-05  Score=55.92  Aligned_cols=38  Identities=18%  Similarity=0.212  Sum_probs=34.1

Q ss_pred             CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      +.|++||.+.|.|..|++|.|.|+++|++||.++-|-+
T Consensus        41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i   78 (164)
T 1sjr_A           41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIIT   78 (164)
T ss_dssp             CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEE
T ss_pred             CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEE
Confidence            56899999999999999999999999999997766554

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=97.89  E-value=3.6e-05  Score=55.37  Aligned_cols=68  Identities=15%  Similarity=0.013  Sum_probs=55.8

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQ   84 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g   84 (94)
                      .+..|||||.+.++|..+++.   +...+.|+++.+.++.            ++-|  -|.|.-+.+|-+-|..+|++||
T Consensus        80 ~~g~afV~f~~~~~A~~A~~~---~~~~~~g~~i~v~~~~------------~~~l--~v~nlp~~~t~~~l~~~f~~~G  142 (292)
T 2ghp_A           80 NFRFARIEFARYDGALAAITK---THKVVGQNEIIVSHLT------------ECTL--WMTNFPPSYTQRNIRDLLQDIN  142 (292)
T ss_dssp             SSEEEEEEESSHHHHHHHHTT---TTCEETTEECEEEECC------------SCEE--EEECCCTTCCHHHHHHHHHHTT
T ss_pred             CcEEEEEEECCHHHHHHHHHh---CCcEeCCcEEEEEECC------------CCEE--EEECCCCCCCHHHHHHHHHHhC
Confidence            478999999999999999962   5568999999999873            2222  3578889999999999999999


Q ss_pred             -ceEEE
Q psy9170          85 -VYLIV   89 (94)
Q Consensus        85 -~~~~v   89 (94)
                       .+.-|
T Consensus       143 ~~i~~v  148 (292)
T 2ghp_A          143 VVALSI  148 (292)
T ss_dssp             CCCCEE
T ss_pred             CCeEEE
Confidence             65544

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=97.75  E-value=5.9e-05  Score=50.89  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=37.4

Q ss_pred             ceEEEEecCHHHHHHHHhhhhccCceEeC--eEEEEEeccceeeecc
Q psy9170           7 IQAFLEMADECAASTMVTYFTTCVAQLRG--RAVYVQFSNHKELKTD   51 (94)
Q Consensus         7 nQAfvEm~d~e~A~~~v~~~~~~p~~irg--~~vyiqyS~~~eL~~~   51 (94)
                      .||||||+|.++|..+++.....  .+.|  +++.++||+.++|.-.
T Consensus        67 fqAFVef~~~~~A~~Ai~~LnG~--~i~g~~~~LrI~~ak~~~l~v~  111 (130)
T 3zzy_A           67 FQALLQYADPVSAQHAKLSLDGQ--NIYNACCTLRIDFSKLTSLNVK  111 (130)
T ss_dssp             EEEEEEESCHHHHHHHHHHHTTC--EEETTEEEEEEEECSCSSCCCC
T ss_pred             cEEEEEECCHHHHHHHHHHcCCC--eecCCCcEEEEEecCCCceeEE
Confidence            48999999999999999998876  5666  8999999999988653

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=97.73  E-value=6.1e-05  Score=47.53  Aligned_cols=40  Identities=18%  Similarity=0.359  Sum_probs=35.4

Q ss_pred             CceEEEEecCHHHHHHHHhhhhcc--CceEeCeEEEEEeccc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTC--VAQLRGRAVYVQFSNH   45 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~--p~~irg~~vyiqyS~~   45 (94)
                      |.-|||||++.++|.+++......  +..|.||++.++|++.
T Consensus        53 rG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks   94 (95)
T 2lkz_A           53 RGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS   94 (95)
T ss_dssp             SSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred             ceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence            568999999999999999998854  4579999999999875

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=97.72  E-value=5.8e-05  Score=46.63  Aligned_cols=41  Identities=20%  Similarity=0.217  Sum_probs=34.1

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      .|..|||||++.++|..+++... +...+.|+++.++||+.+
T Consensus        43 ~rg~aFV~F~~~~~A~~Ai~~~~-~~~~~~gr~i~V~~a~~~   83 (91)
T 2lxi_A           43 SRGFAFVEFSHLQDATRWMEANQ-HSLNILGQKVSMHYSDPK   83 (91)
T ss_dssp             CSSEEEEECSSHHHHHHHHHTTT-TEEEETTEEEEEECCCSC
T ss_pred             cCceEEEEecCHHHHHHHHHhcC-CCeEECCEEEEEEEcCCC
Confidence            46789999999999999987532 345799999999999864

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=97.49  E-value=0.00015  Score=42.93  Aligned_cols=39  Identities=13%  Similarity=0.244  Sum_probs=34.2

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      +..|||+|++.++|..++..+...  .+.|+++.++++..+
T Consensus        43 ~g~afV~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~a~~~   81 (83)
T 3md1_A           43 RGYGFVSFTSQDDAQNAMDSMQGQ--DLNGRPLRINWAAKL   81 (83)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHTTC--EETTEECEEEECCCC
T ss_pred             cceEEEEECCHHHHHHHHHHhcCC--eeCCcEEEEEecCcC
Confidence            678999999999999999977654  689999999999865

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.47  E-value=0.00024  Score=43.83  Aligned_cols=45  Identities=20%  Similarity=0.290  Sum_probs=38.1

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD   51 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~   51 (94)
                      .|..|||||++.++|..++..+..  ..+.|+++.+.+++.+.-...
T Consensus        53 ~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~V~~a~~~~~~~~   97 (102)
T 2cqb_A           53 HRGFAFVEFELAEDAAAAIDNMNE--SELFGRTIRVNLAKPMRIKES   97 (102)
T ss_dssp             CSSEEEECCSSHHHHHHHHHHHTT--EEETTEEEEEEECCCCCCCCC
T ss_pred             cceEEEEEECCHHHHHHHHHHhCC--CEECCcEEEEEeCCCCCCCCC
Confidence            467899999999999999987654  478999999999988766554

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=97.45  E-value=0.00021  Score=47.26  Aligned_cols=82  Identities=10%  Similarity=-0.004  Sum_probs=61.5

Q ss_pred             CCceEEEEecCHHHHHHHHhhh-hccCceEeCeEEEEEeccceeeecc-----------CCCCCCcEEEEEEcccCCcee
Q psy9170           5 DEIQAFLEMADECAASTMVTYF-TTCVAQLRGRAVYVQFSNHKELKTD-----------QTHSNALLLHLTIGIILRPAT   72 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~-~~~p~~irg~~vyiqyS~~~eL~~~-----------~s~~~n~ILL~TI~n~~ypIt   72 (94)
                      -|.++++||.+.++|..++.-+ ...  .+.| ++.+++++.+.-...           ....+++-|.  |.|.-+.+|
T Consensus        12 l~G~~~ve~~~~~~A~~a~~~~~ng~--~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--V~nl~~~~t   86 (150)
T 2i2y_A           12 LKGETTTEAVDAATAEKVFKQYANDN--GVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVY--VGNLGNNGN   86 (150)
T ss_dssp             SCEEEEEECSSHHHHTTTHHHHHHHH--TCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEE--EESCCSCCS
T ss_pred             ccccceeeecCHHHHHHHHHHHhcCC--CCCC-ceecccccCccccccccccccccccccCCCCCCEEE--EeCCCCCCC
Confidence            3789999999999999998777 443  6788 999998886543221           1123344443  579999999


Q ss_pred             HhHHHhhhccccceEEEEE
Q psy9170          73 HYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        73 vdvlh~i~s~~g~~~~v~~   91 (94)
                      -|-|..+|++||.+.-|-+
T Consensus        87 ~~~l~~~F~~~G~i~~v~i  105 (150)
T 2i2y_A           87 KTELERAFGYYGPLRSVWV  105 (150)
T ss_dssp             CHHHHHHHHHHSCEEEEEE
T ss_pred             HHHHHHHHHhhCCEEEEEE
Confidence            9999999999998766544

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.42  E-value=0.00017  Score=47.99  Aligned_cols=43  Identities=12%  Similarity=0.125  Sum_probs=35.3

Q ss_pred             eEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         8 QAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      ||||||+|.++|..++.......+.=+++++.|+|++.+.|..
T Consensus        64 ~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l~v  106 (124)
T 2e5i_A           64 QAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNV  106 (124)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCCCC
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCccee
Confidence            8999999999999999988766332233799999999988755

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=97.39  E-value=0.00026  Score=42.05  Aligned_cols=38  Identities=21%  Similarity=0.297  Sum_probs=32.8

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN   44 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~   44 (94)
                      .|..|||||++.++|..++..+...  .+.|+++.+++++
T Consensus        48 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~ak   85 (85)
T 3mdf_A           48 HRGFAFVEFELAEDAAAAIDNMNES--ELFGRTIRVNLAK   85 (85)
T ss_dssp             ECSEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECC
T ss_pred             cccEEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEEcC
Confidence            3678999999999999999876644  7899999999974

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.39  E-value=0.00035  Score=42.52  Aligned_cols=42  Identities=19%  Similarity=0.217  Sum_probs=36.0

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      .|..|||||++.++|..++......  .+.|+++.++++..+.-
T Consensus        47 ~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~~   88 (96)
T 1x5t_A           47 SKGYAFINFASFDASDAAIEAMNGQ--YLCNRPITVSYAFKKDS   88 (96)
T ss_dssp             CCSEEEEEBSSHHHHHHHHHTTTTC--EETTEECEEEESCCCCC
T ss_pred             cCeEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEEecccCC
Confidence            3678999999999999999977655  68999999999987654

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=97.39  E-value=0.00032  Score=42.98  Aligned_cols=43  Identities=21%  Similarity=0.302  Sum_probs=37.1

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      |..|||||++.++|..++......  .+.|+++.+.+++.+....
T Consensus        44 ~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~~~   86 (96)
T 2x1f_A           44 KGYAFIEFRDLESSASAVRNLNGY--QLGSRFLKCGYSSNSDISG   86 (96)
T ss_dssp             CSEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECSCSSGGG
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEEcCCCCCCC
Confidence            678999999999999999877654  7899999999999866543

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=97.38  E-value=0.00015  Score=48.09  Aligned_cols=42  Identities=19%  Similarity=0.361  Sum_probs=36.3

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      +.|++|||||++.++|..++......  .+.|+++.|+|++.+.
T Consensus        70 ~~rG~aFV~F~~~~~A~~Ai~~lng~--~l~gr~l~V~~a~~~~  111 (127)
T 2a3j_A           70 DNSGKAYIVFATQESAQAFVEAFQGY--PFQGNPLVITFSETPQ  111 (127)
T ss_dssp             SSCCCEEEEESSHHHHHHHHHHSTTC--CCTTSCCEEEECCCCC
T ss_pred             CcCCEEEEEECCHHHHHHHHHHHCCC--EeCCCEEEEEEccCcc
Confidence            45789999999999999999887655  6789999999998653

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.38  E-value=0.00034  Score=43.14  Aligned_cols=41  Identities=20%  Similarity=0.300  Sum_probs=35.6

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      .|..|||||++.++|..++..+..  ..+.|+++.+.+++.+.
T Consensus        52 ~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~~a~~~~   92 (101)
T 2fc9_A           52 SKGYAFIEFASFEDAKEALNSCNK--REIEGRAIRLELQGPRG   92 (101)
T ss_dssp             BCSEEEEECSSHHHHHHHHHHTSS--EEETTEEEEEEECSSCC
T ss_pred             EeeEEEEEECCHHHHHHHHHHhCC--CEeCCeEEEEEEcCCCC
Confidence            477999999999999999997664  47889999999998764

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=97.36  E-value=0.00026  Score=42.25  Aligned_cols=39  Identities=15%  Similarity=0.250  Sum_probs=33.0

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+.+++.+
T Consensus        48 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~k   86 (87)
T 3bs9_A           48 KGYGFVSFFNKWDAENAIQQMGGQ--WLGGRQIRTNWATRK   86 (87)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEEEC--
T ss_pred             ceEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEecCCC
Confidence            568999999999999999987654  789999999998754

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=97.34  E-value=0.00022  Score=49.86  Aligned_cols=45  Identities=20%  Similarity=0.176  Sum_probs=36.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      +.+|||||+|.++|..++.......+.=.|+++.|+||+.+++..
T Consensus        84 rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l~v  128 (164)
T 1sjr_A           84 QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNV  128 (164)
T ss_dssp             CEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSCCC
T ss_pred             CCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcccc
Confidence            569999999999999999988766332245999999999987754

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.33  E-value=0.00029  Score=42.99  Aligned_cols=43  Identities=12%  Similarity=0.100  Sum_probs=35.6

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      ++....|||||++.++|..++......  .+.|+++.+.+++.++
T Consensus        51 ~~~~~~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~V~~a~~~~   93 (96)
T 2e44_A           51 DSETAVVNVTYSSKDQARQALDKLNGF--QLENFTLKVAYIPDEM   93 (96)
T ss_dssp             SSSSEEEEEEESSHHHHHHHHHHHTTC--BCSSCBCEEEECCCCC
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEEcCccc
Confidence            444555999999999999999976654  6789999999998764

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=97.33  E-value=0.00038  Score=42.43  Aligned_cols=40  Identities=13%  Similarity=0.221  Sum_probs=34.9

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      .|..|||||++.++|..++......  .+.|+++.++|++.+
T Consensus        50 ~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~   89 (97)
T 1nu4_A           50 MRGQAFVIFKEVSSATNALRSMQGF--PFYDKPMRIQYAKTD   89 (97)
T ss_dssp             HTTCEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECSSC
T ss_pred             cCcEEEEEeCCHHHHHHHHHHhCCC--EECCcEEEEEEccCC
Confidence            4678999999999999999987754  679999999999864

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.32  E-value=0.00046  Score=41.81  Aligned_cols=37  Identities=22%  Similarity=0.233  Sum_probs=32.3

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN   44 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~   44 (94)
                      |..|||||++.++|..++..+..  ..+.|+++.++|++
T Consensus        58 ~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~~ak   94 (94)
T 2e5h_A           58 KGVAFILFLDKDSAQNCTRAINN--KQLFGRVIKASIAI   94 (94)
T ss_dssp             TTCEEEEESCHHHHHHHHHHTTT--EEETTEEEEEEECC
T ss_pred             ccEEEEEECCHHHHHHHHHHcCC--CeeCCcEEEEEecC
Confidence            56899999999999999987664  47899999999975

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=97.32  E-value=0.0003  Score=44.10  Aligned_cols=37  Identities=11%  Similarity=0.210  Sum_probs=32.4

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN   44 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~   44 (94)
                      |..|||||++.++|..++..+...  .+.|+++.|+|++
T Consensus        61 kG~afV~f~~~~~A~~Ai~~lng~--~~~gr~l~V~~Ak   97 (99)
T 4fxv_A           61 LGYGFVNYVTAKDAERAINTLNGL--RLQSKTIKVSYAR   97 (99)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECC
T ss_pred             cccEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEee
Confidence            457999999999999999887644  7899999999985

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.32  E-value=0.00051  Score=42.45  Aligned_cols=43  Identities=14%  Similarity=0.285  Sum_probs=36.4

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK   49 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~   49 (94)
                      .|..|||||++.++|..++......  .+.|+++.+++++.+.-.
T Consensus        54 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~   96 (103)
T 2cqi_A           54 NDPYCFVEFYEHRDAAAALAAMNGR--KILGKEVKVNWATTPSSQ   96 (103)
T ss_dssp             SCCEEEEEESSHHHHHHHHHHHTTE--EETTEEEEEEECCCTTCC
T ss_pred             CCCEEEEEECCHHHHHHHHHHhCCC--CcCCCeEEEEECCCCccc
Confidence            4679999999999999999977654  688999999999875543

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.32  E-value=0.00029  Score=43.41  Aligned_cols=39  Identities=15%  Similarity=0.246  Sum_probs=34.4

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+++++.+
T Consensus        54 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~   92 (102)
T 2fc8_A           54 KGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK   92 (102)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHTTC--EETTEECEEEECCCC
T ss_pred             CcEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEEecCC
Confidence            568999999999999999987755  789999999999864

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.30  E-value=0.00038  Score=43.43  Aligned_cols=43  Identities=19%  Similarity=0.199  Sum_probs=36.8

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhcc----CceEeCeEEEEEecccee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTC----VAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~----p~~irg~~vyiqyS~~~e   47 (94)
                      .|..|||||++.++|..++..+...    ...+.|+++.+.++..++
T Consensus        56 ~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~  102 (111)
T 1x4h_A           56 SKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRD  102 (111)
T ss_dssp             BCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCC
T ss_pred             CccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCc
Confidence            4778999999999999999987633    568899999999998653

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.26  E-value=0.00039  Score=42.13  Aligned_cols=38  Identities=18%  Similarity=0.104  Sum_probs=33.2

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      |..|||||++.++|..++..+..  ..+.|+++.+++++.
T Consensus        57 ~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~~a~~   94 (95)
T 2cqc_A           57 RGFAFVYFENVDDAKEAKERANG--MELDGRRIRVSGPSS   94 (95)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTT--EEETTEEEEEECCSC
T ss_pred             ccEEEEEECCHHHHHHHHHHhCC--CEECCEEEEEEecCC
Confidence            56899999999999999998764  478999999999874

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.24  E-value=0.00065  Score=41.24  Aligned_cols=41  Identities=20%  Similarity=0.254  Sum_probs=35.0

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      |..|||||++.++|..++......  .+.|+++.+++++.+.-
T Consensus        44 ~~~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~   84 (92)
T 2dgt_A           44 KDYAFVHMERAEDAVEAIRGLDNT--EFQGKRMHVQLSTSRLR   84 (92)
T ss_dssp             SSEEEEEESCHHHHHHHHHHHTTE--EETTEEEEEEESSCCCS
T ss_pred             CCEEEEEECCHHHHHHHHHHhCCC--eeCCcEEEEEEccCCCC
Confidence            458999999999999999877654  68999999999987543

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.23  E-value=0.00081  Score=41.27  Aligned_cols=43  Identities=14%  Similarity=0.134  Sum_probs=36.9

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      +.|..|||+|++.++|..++......  .+.|+++.+.++..+.-
T Consensus        47 ~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~v~~a~~~~~   89 (97)
T 1x5p_A           47 PPRNCAFVTYEKMESADQAVAELNGT--QVESVQLKVNIARKQPM   89 (97)
T ss_dssp             TTTTEEEEEESSHHHHHHHHHHTTTE--EETTEEEEEECCSSCCC
T ss_pred             CCCCEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEECCCCCC
Confidence            56889999999999999999876654  67999999999987644

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.23  E-value=0.00084  Score=41.45  Aligned_cols=44  Identities=11%  Similarity=0.183  Sum_probs=37.5

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD   51 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~   51 (94)
                      |..|||+|++.++|..++..+...  .+.|+++.+.++..+.....
T Consensus        55 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~~   98 (103)
T 2cq3_A           55 KGFGFVTFENSADADRAREKLHGT--VVEGRKIEVNNATARVMTNS   98 (103)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHTTC--EETTEECEEEECCSSCCCCC
T ss_pred             cEEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEcccCCCCCC
Confidence            678999999999999999877654  68999999999988765543

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.22  E-value=0.00044  Score=43.72  Aligned_cols=40  Identities=13%  Similarity=0.169  Sum_probs=35.2

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+++++.+.
T Consensus        69 kg~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~  108 (109)
T 2err_A           69 KGFGFVTFENSADADRAREKLHGT--VVEGRKIEVNNATARV  108 (109)
T ss_dssp             TTEEEEECCCSHHHHHHHHHHTTC--EETTEECEEEECCCSC
T ss_pred             ceEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEECCCCc
Confidence            778999999999999999977655  6899999999998764

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.21  E-value=0.00035  Score=43.05  Aligned_cols=42  Identities=21%  Similarity=0.337  Sum_probs=36.5

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      +.|..|||||++.++|..++..+...  .+.|+++.+++++.+.
T Consensus        49 ~~kg~afV~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~a~~~~   90 (99)
T 2cpj_A           49 KDKGFGFIRLETRTLAEIAKVELDNM--PLRGKQLRVRFACHSA   90 (99)
T ss_dssp             TTTTEEEEECSSSHHHHHHHHHHTTC--CBTTBCCEEEESSCCS
T ss_pred             cCCCEEEEEECCHHHHHHHHHHhCCC--EeCCceEEEEEcCCCC
Confidence            56889999999999999999887755  5789999999998754

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=97.20  E-value=0.00071  Score=41.99  Aligned_cols=39  Identities=8%  Similarity=0.158  Sum_probs=34.2

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |+.|||||++.++|..++......  .+.|+++.+++++.+
T Consensus        57 ~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~   95 (97)
T 2xnq_A           57 NAFGFIQFDNPQSVRDAIEXESQE--MNFGKKLILEVSSSN   95 (97)
T ss_dssp             SSEEEEEESSHHHHHHHHHHHTTS--EETTEECEEEECCCC
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEecCCC
Confidence            678999999999999999987654  788999999998754

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=97.20  E-value=0.00045  Score=41.91  Aligned_cols=38  Identities=13%  Similarity=0.106  Sum_probs=32.5

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      |.-|||||++.++|..++..+...  .+.|+++.+++|++
T Consensus        57 ~g~afV~f~~~~~a~~Ai~~l~g~--~~~gr~l~v~~a~s   94 (95)
T 2ek1_A           57 TGEAMVAFESRDEATAAVIDLNDR--PIGSRKVKLSGPSS   94 (95)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEECCC-
T ss_pred             eeEEEEEECCHHHHHHHHHHhCCC--eECCcEEEEEeccC
Confidence            567999999999999999876654  78999999999874

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.19  E-value=0.0004  Score=43.67  Aligned_cols=45  Identities=18%  Similarity=0.301  Sum_probs=37.4

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      +.|..|||||++.++|..++..+...  .+.|+++.++|++.+.-..
T Consensus        65 ~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~v~~a~~~~~~~  109 (115)
T 2cpx_A           65 RMRGQAFITFPNKEIAWQALHLVNGY--KLYGKILVIEFGKNKKQRS  109 (115)
T ss_dssp             SSCSEEEEECSSHHHHHHHHHHSTTC--BCSSCBCEEEECCCCSCCC
T ss_pred             ccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEEccCCCCCC
Confidence            34789999999999999999987754  5699999999998765433

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.19  E-value=0.00063  Score=42.70  Aligned_cols=41  Identities=20%  Similarity=0.264  Sum_probs=35.5

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+.+++.+.=
T Consensus        65 ~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~  105 (113)
T 2cpe_A           65 KGDATVSYEDPPTAKAAVEWFDGK--DFQGSKLKVSLARKKPP  105 (113)
T ss_dssp             CSEEEEEBSSHHHHHHHHHHHTTC--EETTEECEEECSSCCCC
T ss_pred             eeEEEEEECCHHHHHHHHHHcCCC--ccCCCEEEEEECCCCCC
Confidence            678999999999999999987655  68999999999987543

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.19  E-value=0.00072  Score=41.40  Aligned_cols=42  Identities=19%  Similarity=0.027  Sum_probs=35.6

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      .|..|||||++.++|..++......  .+.|+++.+.+++.++-
T Consensus        49 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~   90 (99)
T 1whw_A           49 PKGFAFVTFMFPEHAVKAYAEVDGQ--VFQGRMLHVLPSTIKKE   90 (99)
T ss_dssp             CCSEEEEEESSHHHHHHHHHHTTTE--ESSSCEEEEEECCCCST
T ss_pred             cCeEEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEEcCCCcc
Confidence            3578999999999999999876644  77899999999987654

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.18  E-value=0.00064  Score=43.00  Aligned_cols=40  Identities=13%  Similarity=0.189  Sum_probs=35.1

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      |..|||||++.++|..++......  .+.|+++.+++++.+.
T Consensus        63 ~G~afV~f~~~~~A~~Ai~~lng~--~~~gr~l~V~~a~~k~  102 (111)
T 2cpi_A           63 SASAYVTYIRSEDALRAIQCVNNV--VVDGRTLKASLGTTKY  102 (111)
T ss_dssp             CEEEEEEESSHHHHHHHHHHHTTE--EETTEEEEEESCCCCS
T ss_pred             CeEEEEEECcHHHHHHHHHHhCCC--EECCEEEEEEeccccc
Confidence            369999999999999999987655  6899999999998765

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=97.18  E-value=0.00049  Score=41.95  Aligned_cols=40  Identities=23%  Similarity=0.343  Sum_probs=34.4

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      .|..|||||++.++|..++.....  ..+.|+++.+++++.+
T Consensus        52 ~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~v~~a~~~   91 (96)
T 1fjc_A           52 SKGIAYIEFKSEADAEKNLEEKQG--AEIDGRSVSLYYTGEK   91 (96)
T ss_dssp             EEEEEEEEESSHHHHHHHHHHTTE--EEETTEEEEEEECSSS
T ss_pred             cceEEEEEECCHHHHHHHHHHhCC--CEECCeEEEEEEcCCC
Confidence            367899999999999999997765  4789999999998754

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.17  E-value=0.00046  Score=42.23  Aligned_cols=42  Identities=14%  Similarity=0.126  Sum_probs=36.0

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK   49 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~   49 (94)
                      |.-|||||++.++|..++..+...  .+.|+++.+++++.+.-.
T Consensus        50 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~   91 (98)
T 2cpf_A           50 MGFGFVEYKKPEQAQKALKQLQGH--TVDGHKLEVRISERATKP   91 (98)
T ss_dssp             EEEEEEEESSHHHHHHHHHHSTTC--EETTEECEEECSSCSSCC
T ss_pred             ccEEEEEECCHHHHHHHHHHhCCC--eeCCeEEEEEEccCCCCC
Confidence            568999999999999999987654  789999999999876543

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=97.17  E-value=0.00061  Score=40.57  Aligned_cols=39  Identities=13%  Similarity=0.141  Sum_probs=33.9

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      .|..|||||++.++|..++..+...  .+.|+++.++++..
T Consensus        46 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~   84 (88)
T 4a8x_A           46 SKGYAYVEFENPDEAEKALKHMDGG--QIDGQEITATAVLA   84 (88)
T ss_dssp             ECSEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEEECC
T ss_pred             CCcEEEEEEecHHHHHHHHHHcCCC--eECCeEEEEEECCC
Confidence            5778999999999999999977654  78999999998864

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.17  E-value=0.00054  Score=43.55  Aligned_cols=43  Identities=19%  Similarity=0.280  Sum_probs=37.1

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      .|..|||||++.++|..++..   +...+.|+++.+.+++.++...
T Consensus        56 ~~G~afV~F~~~~~a~~Al~~---~~~~~~gr~i~v~~a~~~~~~~   98 (114)
T 2cpy_A           56 GLGQALVQFKNEDDARKSERL---HRKKLNGREAFVHVVTLEDMRE   98 (114)
T ss_dssp             CSSCEEEECSSHHHHHHHGGG---CSEEETTEEEEEEEECHHHHHH
T ss_pred             cceEEEEEECCHHHHHHHHHh---CCCccCCeEEEEEECCHHHHHH
Confidence            477899999999999999887   4568999999999999877544

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.17  E-value=0.00047  Score=41.83  Aligned_cols=41  Identities=17%  Similarity=0.220  Sum_probs=35.1

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+.+++.+.-
T Consensus        47 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~   87 (95)
T 2dnz_A           47 KGYGFITFSDSECARRALEQLNGF--ELAGRPMRVGHVTERLD   87 (95)
T ss_dssp             CSEEEEEESCHHHHHHHHHHHTTC--CSSSSCCEEEESSCCCC
T ss_pred             eeEEEEEECCHHHHHHHHHHhCCC--eeCCcEEEEEEcccccC
Confidence            568999999999999999987654  67899999999986543

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.16  E-value=0.00043  Score=42.59  Aligned_cols=39  Identities=23%  Similarity=0.275  Sum_probs=33.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |..|||||++.++|..++..+..  ..+.|+++.+.+++.+
T Consensus        58 ~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~v~~a~~~   96 (100)
T 2do4_A           58 KGLAYVEYENESQASQAVMKMDG--MTIKENIIKVAISNSG   96 (100)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTT--EESSSCEEEEEECCCC
T ss_pred             EeEEEEEECCHHHHHHHHHHhCC--CEECCEEEEEEECCCC
Confidence            57899999999999999987765  4789999999998754

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.16  E-value=0.00057  Score=41.90  Aligned_cols=41  Identities=17%  Similarity=0.200  Sum_probs=35.0

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEe--CeEEEEEeccce
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLR--GRAVYVQFSNHK   46 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~ir--g~~vyiqyS~~~   46 (94)
                      ++|..|||||++.++|..++......  .+.  |+++.+++++.+
T Consensus        51 ~~~g~afV~f~~~~~A~~A~~~l~g~--~~~~~g~~l~V~~a~~~   93 (97)
T 1why_A           51 KGDSFAYIQYESLDAAQAACAKMRGF--PLGGPDRRLRVDFAKSG   93 (97)
T ss_dssp             SSSCCEEEEESSHHHHHHHHHHHTTC--BCSSSSCBCEEEECCCC
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHCCC--EeCCCCcEEEEEECCCC
Confidence            45789999999999999999987755  567  999999999764

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=97.16  E-value=0.00073  Score=43.25  Aligned_cols=44  Identities=14%  Similarity=0.092  Sum_probs=37.6

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      .|..|||||++.++|..++..+...  .+.|+++.+++|..+....
T Consensus        75 ~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~~~  118 (124)
T 2kt5_A           75 SLGTADVHFERRADALKAMKQYKGV--PLDGRPMDIQLVASQIDLE  118 (124)
T ss_dssp             CCSEEEEEESSHHHHHHHHHHHTTE--ESSSCEEEEEEECCTTCCC
T ss_pred             EeeEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEEEeCCCCCCC
Confidence            4679999999999999999977655  7899999999998766544

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=97.15  E-value=0.00047  Score=41.85  Aligned_cols=38  Identities=16%  Similarity=0.199  Sum_probs=33.2

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+++++.
T Consensus        57 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~   94 (95)
T 2ywk_A           57 KSFGFVCFKHPESVSYAIALLNGI--RLYGRPINVSGPSS   94 (95)
T ss_dssp             EEEEEEEESSTHHHHHHHHHHTTC--EETTEECEEECCCC
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCC--EECCCEEEEEEcCC
Confidence            568999999999999999977655  68999999999864

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.15  E-value=0.00037  Score=42.96  Aligned_cols=42  Identities=12%  Similarity=0.110  Sum_probs=35.6

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      .|..|||||++.++|..++..+...  .+.|+++.+++++.+.-
T Consensus        53 ~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~~   94 (102)
T 1x5s_A           53 SRGFGFVTFENIDDAKDAMMAMNGK--SVDGRQIRVDQAGKSSD   94 (102)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHTTC--CTTSCCCEEEEEECCCC
T ss_pred             cccEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEECCCCCC
Confidence            3668999999999999999887755  57899999999987654

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.15  E-value=0.00053  Score=40.79  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=33.4

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN   44 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~   44 (94)
                      +.|+.|||+|++.++|..++.... +...+.|+++.++|++
T Consensus        46 ~~kg~afV~f~~~~~A~~a~~~l~-~~~~~~g~~l~v~~ak   85 (85)
T 2ytc_A           46 QRQQCAFIQFATRQAAEVAAEKSF-NKLIVNGRRLNVKWGR   85 (85)
T ss_dssp             GGGTEEEEEESSHHHHHHHHHTTT-TTCEETTEECCEEECC
T ss_pred             CCCCEEEEEECCHHHHHHHHHHhc-CCeeECCCEEEEEecC
Confidence            457899999999999999999662 2457899999999874

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.14  E-value=0.00045  Score=42.71  Aligned_cols=44  Identities=18%  Similarity=0.237  Sum_probs=37.0

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      .|..|||+|++.++|..++..+...  .+.|+++.+.+++.++-..
T Consensus        54 ~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~   97 (103)
T 2d9p_A           54 SKGFGFVCFSSPEEATKAVTEMNGR--IVATKPLYVALAQRKEERQ   97 (103)
T ss_dssp             EEEEEEEEESSHHHHHHHHHHHTTC--BSSSSBCEEEECSSCCCCC
T ss_pred             cCEEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEEecccccCC
Confidence            4678999999999999999987755  5799999999998765443

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=97.14  E-value=0.00056  Score=41.38  Aligned_cols=43  Identities=21%  Similarity=0.390  Sum_probs=36.5

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      +.|..|||||++.++|..++......  .+.|+++.++++....+
T Consensus        38 ~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~V~~a~~~~~   80 (88)
T 1wg1_A           38 RNKRTAFVTLLNGEQAQNAIQMFHQY--SFRGKDLIVQLQPTDAL   80 (88)
T ss_dssp             GGGTEEEECCSCHHHHHHHHHHHTTE--EETTEEEEEEECCCCCC
T ss_pred             CCCcEEEEEECCHHHHHHHHHHhCCC--eECCcEEEEEEcCCCce
Confidence            56789999999999999999976644  78999999999876544

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=97.13  E-value=0.00087  Score=41.85  Aligned_cols=39  Identities=15%  Similarity=0.165  Sum_probs=34.3

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+.++..+
T Consensus        68 ~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~  106 (110)
T 1oo0_B           68 KGYALVEYETHKQALAAKEALNGA--EIMGQTIQVDWCFVK  106 (110)
T ss_dssp             CSEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEESEES
T ss_pred             ceEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEEEcccC
Confidence            678999999999999999977654  789999999998764

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.13  E-value=0.00057  Score=42.54  Aligned_cols=44  Identities=20%  Similarity=0.184  Sum_probs=36.7

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      +.|..|||||++.++|..++.........+.|+++.+.+++.+.
T Consensus        50 ~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~   93 (109)
T 2dis_A           50 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEI   93 (109)
T ss_dssp             TTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSC
T ss_pred             CcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCC
Confidence            45789999999999999999987533457899999999998654

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=97.13  E-value=0.00064  Score=42.17  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=33.2

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+++++.
T Consensus        70 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~s  107 (107)
T 3ulh_A           70 LGTADVHFERKADALKAMKQYNGV--PLDGRPMNIQLVTS  107 (107)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEEECC
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEEeCC
Confidence            568999999999999999987655  78999999999863

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.12  E-value=0.00061  Score=42.18  Aligned_cols=42  Identities=12%  Similarity=0.248  Sum_probs=35.5

Q ss_pred             CCceEEEEecCHHHHHHHHhhh-hccCceEeCeEEEEEeccceee
Q psy9170           5 DEIQAFLEMADECAASTMVTYF-TTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~-~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      .|..|||||++.++|..++... ...  .+.|+++.+++++.+.-
T Consensus        57 ~~g~afV~f~~~~~a~~A~~~l~~~~--~~~g~~l~v~~a~~~~~   99 (107)
T 2cph_A           57 HRGFGFVDFITKQDAKKAFNALCHST--HLYGRRLVLEWADSEVT   99 (107)
T ss_dssp             SCSEEEEEESSHHHHHHHHHHHHTCC--BSSSCBCEEEECCCCCC
T ss_pred             cCceEEEEECCHHHHHHHHHHhccCC--eECCCEEEEEeCCCCCC
Confidence            3678999999999999999987 443  67899999999987643

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.12  E-value=0.00087  Score=41.20  Aligned_cols=40  Identities=15%  Similarity=0.199  Sum_probs=35.0

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      |..|||||++.++|..++......  .+.|+++.+++++.+.
T Consensus        51 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~   90 (99)
T 2cpd_A           51 RDYAFVHFSNREDAVEAMKALNGK--VLDGSPIEVTLAKPVD   90 (99)
T ss_dssp             SSEEEEEESSHHHHHHHHHHHSSE--EETTEEEEEECCCCCC
T ss_pred             CCeEEEEeCCHHHHHHHHHHhCCC--EeCCcEEEEEECCCCC
Confidence            679999999999999999977654  7899999999998654

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.11  E-value=0.00031  Score=45.57  Aligned_cols=37  Identities=16%  Similarity=0.245  Sum_probs=33.5

Q ss_pred             ceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           7 IQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         7 nQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      .||||+|++.++|.+++.-....  .+.||++.++|++.
T Consensus        47 G~AfV~F~~~esA~~A~~~l~G~--~l~gr~i~v~~A~~   83 (96)
T 2diu_A           47 CSAILRFINQDSAERAQKRMENE--DVFGNRIIVSFTPK   83 (96)
T ss_dssp             TCEEEEESSHHHHHHHHHHHTTC--CSSSSCCEEESSCC
T ss_pred             CEEEEEECCHHHHHHHHHHhcCC--ccCCceEEEEecCC
Confidence            79999999999999999988866  56799999999985

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.10  E-value=0.00085  Score=41.15  Aligned_cols=43  Identities=19%  Similarity=0.288  Sum_probs=35.6

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      .|..|||||++.++|..+++ .  +...+.|+++.+.+++.++-..
T Consensus        51 ~~g~afV~f~~~~~a~~A~~-~--~~~~~~g~~l~V~~a~~~~~~~   93 (99)
T 2dgs_A           51 PRGFGFITFEDEQSVDQAVN-M--HFHDIMGKKVEVKRAEPRDSKS   93 (99)
T ss_dssp             CCSEEEEEESSHHHHHHHHH-H--CCCBSSSCBCEEEECCCCCCCC
T ss_pred             CCceEEEEECCHHHHHHHHH-h--CCCEECCeEEEEEECCCCcccC
Confidence            46789999999999999998 4  3447899999999998765443

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=97.10  E-value=0.00099  Score=41.90  Aligned_cols=43  Identities=14%  Similarity=0.203  Sum_probs=36.6

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+.+++.+.-..
T Consensus        57 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~   99 (115)
T 2dgo_A           57 KGYGFVSFFNKWDAENAIQQMGGQ--WLGGRQIRTNWATRKPPAP   99 (115)
T ss_dssp             EEEEEEEESSHHHHHHHHHHTTTC--EETTEECEEEESSCCCCCS
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEccCCCCCC
Confidence            568999999999999999987654  7999999999998765443

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.10  E-value=0.00071  Score=41.07  Aligned_cols=43  Identities=23%  Similarity=0.330  Sum_probs=36.3

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      .|..|||||++.++|..++..... ...+.|+++.++++..+.-
T Consensus        43 ~~g~afV~f~~~~~A~~A~~~l~g-~~~~~g~~l~v~~a~~~~~   85 (93)
T 2cqh_A           43 KSGYAFVDYPDQNWAIRAIETLSG-KVELHGKIMEVDYSVSKKL   85 (93)
T ss_dssp             ETTEEEECCSCHHHHHHHHHHHTT-TCEETTEECEEEECCCCCC
T ss_pred             CCCEEEEEECCHHHHHHHHHHccC-CeeECCEEEEEEEccCccc
Confidence            478999999999999999987665 2478999999999987543

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=97.10  E-value=0.00097  Score=41.35  Aligned_cols=43  Identities=16%  Similarity=0.258  Sum_probs=36.3

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+.+++.+.-..
T Consensus        45 ~~~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~   87 (103)
T 2dgu_A           45 KDYAFIHFDERDGAVKAMEEMNGK--DLEGENIEIVFAKPPDQKR   87 (103)
T ss_dssp             SSCEEEEESSHHHHHHHHHHHTTE--EETTEEEEEEECCCCCCCC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHCCC--ccCCCEEEEEEcCCCcccc
Confidence            568999999999999999987655  6899999999998765433

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.09  E-value=0.00049  Score=43.81  Aligned_cols=46  Identities=11%  Similarity=0.177  Sum_probs=38.5

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      ++.|..|||||++.++|..++......  .+.|++++++|+....+..
T Consensus        43 ~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~~~   88 (111)
T 1whx_A           43 PEGGITAIVEFLEPLEARKAFRHLAYS--KFHHVPLYLEWAPIGVFGA   88 (111)
T ss_dssp             CSSSSCEEEEESCHHHHHHHHHHHTTC--BSSSSBCEEEEEETTTTCC
T ss_pred             eCCCCEEEEEeCCHHHHHHHHHHhCCC--EECCeEEEEEECCCCccCC
Confidence            356789999999999999999987755  5789999999998765544

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.09  E-value=0.0011  Score=41.15  Aligned_cols=39  Identities=10%  Similarity=0.162  Sum_probs=33.1

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      |..|||||++.++|..++ ...  ...+.|+++.++++..++
T Consensus        57 ~g~afV~f~~~~~a~~A~-~l~--g~~~~g~~l~V~~a~~~~   95 (104)
T 1wi8_A           57 KGFGYAEFEDLDSLLSAL-SLN--EESLGNKRIRVDVADQAQ   95 (104)
T ss_dssp             CSCEEEEESSHHHHHHHH-GGG--TCEETTEECEEEECCCCC
T ss_pred             CeEEEEEECCHHHHHHHH-hcC--CCEeCCcEEEEEEccCCC
Confidence            668999999999999999 444  347899999999998754

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.09  E-value=0.001  Score=41.59  Aligned_cols=43  Identities=9%  Similarity=0.155  Sum_probs=36.8

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      ++|..|||+|++.++|..++..+...  .+.|+++.+.+++.+.-
T Consensus        59 ~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~  101 (109)
T 1x4g_A           59 PEKGYSFVRFSTHESAAHAIVSVNGT--TIEGHVVKCYWGKESPD  101 (109)
T ss_dssp             TTTTEEEEEESSHHHHHHHHHHHTTC--EETTEECEEECCCCCCS
T ss_pred             CCCCEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEEecCCCCC
Confidence            34789999999999999999887654  78999999999987643

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.09  E-value=0.00076  Score=41.22  Aligned_cols=38  Identities=13%  Similarity=0.143  Sum_probs=33.4

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      |.-|||||++.++|..++......  .+.|+++.++++..
T Consensus        57 ~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~V~~a~~   94 (98)
T 2cqp_A           57 TGEAMVAFESRDEATAAVIDLNDR--PIGSRKVKLVLGSG   94 (98)
T ss_dssp             EEEEEEEESCHHHHHHHHHHTTTC--EETTEECEEEESSC
T ss_pred             eeEEEEEECCHHHHHHHHHHhCCC--eeCCeEEEEEEcCC
Confidence            567999999999999999876654  78999999999874

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=97.08  E-value=0.00076  Score=44.18  Aligned_cols=41  Identities=27%  Similarity=0.298  Sum_probs=35.5

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      +.|..|||+|++.++|..++..+...  .+.|+++.++|++..
T Consensus        90 ~~~g~afV~f~~~~~A~~Ai~~lng~--~~~g~~l~V~~a~~~  130 (143)
T 3egn_A           90 RMKGQAFIGLPNEKAAAKALKEANGY--VLFGKPMVVQFARSA  130 (143)
T ss_dssp             TTEEEEEEECSSHHHHHHHHHHHTTB--EETTEECEEEECCCS
T ss_pred             CcccEEEEEeCCHHHHHHHHHHhCCC--EeCCcEEEEEECCCC
Confidence            45789999999999999999987654  689999999999764

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.06  E-value=0.00081  Score=41.52  Aligned_cols=41  Identities=10%  Similarity=0.062  Sum_probs=34.9

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+.+++.+.-
T Consensus        57 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~~   97 (103)
T 2cq0_A           57 KGFAFISFHRREDAARAIAGVSGF--GYDHLILNVEWAKPSTN   97 (103)
T ss_dssp             EEEEEEEESSHHHHHHHHHHTTTC--EETTEECEEEESSCCCC
T ss_pred             eeEEEEEECCHHHHHHHHHHcCCC--eeCCcEEEEEECCCCCC
Confidence            457999999999999999987654  68999999999987543

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=97.06  E-value=0.00071  Score=41.65  Aligned_cols=40  Identities=5%  Similarity=0.187  Sum_probs=33.7

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      .|.-|||||++.++|..++. ....  .+.|+++.+++++.++
T Consensus        57 ~~g~afV~f~~~~~a~~A~~-l~g~--~~~g~~l~V~~a~~~~   96 (101)
T 1fj7_A           57 NRKFGYVDFESAEDLEKALE-LTGL--KVFGNEIKLEKPKGRD   96 (101)
T ss_dssp             TTTEEEEEESSHHHHHHHHH-GGGC--CBTTBCCEEECCSCCC
T ss_pred             cCcEEEEEECCHHHHHHHHh-cCCc--EECCcEEEEEEcCCCC
Confidence            46789999999999999998 5544  6789999999998654

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.06  E-value=0.0011  Score=41.45  Aligned_cols=40  Identities=23%  Similarity=0.199  Sum_probs=35.0

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      |.-|||||++.++|..++......  .+.|+++.+++++.+.
T Consensus        61 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~~  100 (109)
T 1x4a_A           61 PPFAFVEFEDPRDAEDAVYGRDGY--DYDGYRLRVEFPRSGR  100 (109)
T ss_dssp             SCCEEEEESCHHHHHHHHHHHTTC--EETTEECEEECCCCCC
T ss_pred             CcEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEcccCC
Confidence            678999999999999999877654  7899999999998654

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.06  E-value=0.00064  Score=41.13  Aligned_cols=41  Identities=22%  Similarity=0.338  Sum_probs=35.2

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      |+.|||||++.++|..++......  .+.|+++.+.++..+.-
T Consensus        42 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~~   82 (90)
T 2dnq_A           42 KNYGFVHIEDKTAAEDAIRNLHHY--KLHGVNINVEASKNKSK   82 (90)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHTTC--BCSSCBCEEECSSCCCC
T ss_pred             CCEEEEEECCHHHHHHHHHHhcCC--ccCCcEEEEEECCCCCC
Confidence            678999999999999999877644  68999999999987544

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=97.05  E-value=0.00087  Score=42.27  Aligned_cols=43  Identities=14%  Similarity=0.193  Sum_probs=36.0

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      |.-|||||++.++|..++..+...  .+.|+++.+++++.+.-..
T Consensus        67 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~  109 (115)
T 2cpz_A           67 KCFGFVSYDNPVSAQAAIQSMNGF--QIGMKRLKVQLKRSKNDSK  109 (115)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHTTC--EETTEECEEECCCCSCCCC
T ss_pred             CccEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEEcCCCCcCC
Confidence            457999999999999999887654  7899999999998765433

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.05  E-value=0.0012  Score=40.66  Aligned_cols=39  Identities=13%  Similarity=0.252  Sum_probs=33.9

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |..|||||++.++|..++......  .+.|+++.+++++.+
T Consensus        52 rg~afV~f~~~~~A~~Ai~~l~g~--~~~gr~l~V~~a~~~   90 (96)
T 2dgx_A           52 QLKAVVQMENLQDAIGAVNSLHRY--KIGSKKILVSLATGA   90 (96)
T ss_dssp             TCCEEEEESSHHHHHHHHHHHTTE--EETTEEEEEEECCCS
T ss_pred             CeEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEEcCCC
Confidence            678999999999999999987654  789999999998654

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=97.05  E-value=0.00083  Score=41.33  Aligned_cols=42  Identities=24%  Similarity=0.159  Sum_probs=36.6

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      .|..|||||++.++|..++..+...  .+.|+++.+++++.+.-
T Consensus        36 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~   77 (101)
T 2hvz_A           36 PPGFAFVEFEDPRDAEDAVRGLDGK--VICGSRVRVELSTGMPR   77 (101)
T ss_dssp             SSSEEEEECSSHHHHHHHHHHHHHS--CSSSCCCEEEESSSCCC
T ss_pred             CCCEEEEEECCHHHHHHHHHHHCCC--eECCcEEEEEEccCCCC
Confidence            4789999999999999999987765  57999999999987653

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=97.04  E-value=0.00051  Score=42.33  Aligned_cols=40  Identities=10%  Similarity=0.222  Sum_probs=34.3

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      +.|..|||||++.++|..++......  .+.|+++.+.+++.
T Consensus        61 ~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~  100 (101)
T 2la4_A           61 PEKGCCFIKYDTHEQAAVCIVALANF--PFQGRNLRTGWGKE  100 (101)
T ss_dssp             TTTTEEEEECSSHHHHHHHHHHHTTC--EETTEECCCCBCCC
T ss_pred             cCCCEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEeccC
Confidence            56889999999999999999876644  78899999988764

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=97.04  E-value=0.0005  Score=42.31  Aligned_cols=37  Identities=19%  Similarity=0.368  Sum_probs=32.4

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN   44 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~   44 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+++++
T Consensus        63 ~G~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~V~~A~   99 (99)
T 2la6_A           63 KGEATVSFDDPPSAKAAIDWFDGK--EFSGNPIKVSFAT   99 (99)
T ss_dssp             EEEEEEEBSSHHHHHHHHHHHTTC--BSSSSBCEEEECC
T ss_pred             eeEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEecC
Confidence            568999999999999999877755  6789999999874

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=97.03  E-value=0.00078  Score=42.83  Aligned_cols=37  Identities=14%  Similarity=0.157  Sum_probs=33.1

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS   43 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS   43 (94)
                      .|..|||+|++.++|..++......  .+.||++.++||
T Consensus        67 ~~G~~fV~f~~~~~A~~A~~~lng~--~~~Gr~i~v~~s  103 (104)
T 1jmt_A           67 LVGNVYVKFRREEDAEKAVIDLNNR--WFNGQPIHAELS  103 (104)
T ss_dssp             SEEEEEEEESCHHHHHHHHHHHTTC--EETTEECCEEEC
T ss_pred             ccEEEEEEECCHHHHHHHHHHHCCC--EECCEEEEEEEc
Confidence            4789999999999999999887655  789999999997

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.03  E-value=0.0012  Score=41.69  Aligned_cols=40  Identities=13%  Similarity=0.136  Sum_probs=34.7

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      .|..|||+|++.++|..++..   +...+.|+++.+.++..++
T Consensus        68 ~~g~afV~f~~~~~a~~Ai~~---~~~~~~g~~l~V~~a~~~~  107 (116)
T 1x4b_A           68 SRGFGFVTFSSMAEVDAAMAA---RPHSIDGRVVEPKRAVARE  107 (116)
T ss_dssp             CCSEEEEECSSHHHHHHHHTS---CSEEETTEEEEEECCSSCC
T ss_pred             cCceEEEEeCCHHHHHHHHHh---CCcEECCEEEEEEECCCCc
Confidence            367899999999999999987   4568999999999998654

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.02  E-value=0.00084  Score=40.58  Aligned_cols=38  Identities=13%  Similarity=0.142  Sum_probs=32.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |..|||||++.++|..++. ..  ...+.|+++.+.+++.+
T Consensus        50 ~g~afV~f~~~~~a~~A~~-~~--g~~~~gr~i~v~~a~~~   87 (91)
T 2dgw_A           50 TGYIFVDFSNEEEVKQALK-CN--REYMGGRYIEVFREKSG   87 (91)
T ss_dssp             EEEEEEECSSHHHHHHHHH-SC--SEEETTEEEEEEEESSC
T ss_pred             ceEEEEEECCHHHHHHHHH-hC--CceeCCcEEEEEECCcC
Confidence            5689999999999999998 54  34789999999998765

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.02  E-value=0.0007  Score=41.58  Aligned_cols=42  Identities=21%  Similarity=0.288  Sum_probs=35.8

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      .+.|..|||||++.++|..++..+...  .+.|+++.+.+++.+
T Consensus        53 ~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~   94 (97)
T 2e5j_A           53 QGPRRRAFLHYPDSAAAQQAVSCLQGL--RLGTDTLRVALARQQ   94 (97)
T ss_dssp             ETTTTEEEEECSSHHHHHHHHHHHTTC--CSSSSCCEEEECCCC
T ss_pred             CCCCcEEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEEcCCC
Confidence            356889999999999999999877654  678999999998764

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.02  E-value=0.0012  Score=39.79  Aligned_cols=40  Identities=20%  Similarity=0.389  Sum_probs=34.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      +..|||||++.++|..++......  .+.|+++.+.+++.+.
T Consensus        43 ~~~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~   82 (90)
T 2dnp_A           43 KDYAFVHMEKEADAKAAIAQLNGK--EVKGKRINVELSTKGQ   82 (90)
T ss_dssp             SSCEEEEESCHHHHHHHHHHHTTC--EETTEECEEEESCCCC
T ss_pred             CCEEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEECCCCC
Confidence            458999999999999999987654  7899999999998763

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=97.01  E-value=0.00097  Score=42.47  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=34.3

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      |.-|||||++.++|..++..+...  .+.|+++.+.++..++
T Consensus        45 kg~afV~f~~~~~A~~Ai~~l~~~--~~~g~~i~V~~a~~~~   84 (115)
T 4f25_A           45 KGYGFVHFETQEAAERAIEKMNGM--LLNDRKVFVGRFKSRK   84 (115)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHTTC--EETTEECEEEESSCCC
T ss_pred             CceEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEECCCcc
Confidence            567999999999999999877654  7899999999987643

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=97.01  E-value=0.00048  Score=44.98  Aligned_cols=44  Identities=9%  Similarity=0.128  Sum_probs=38.2

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      .|..|||+|++.++|..++......  .+.||++.++|+..+....
T Consensus        54 ~~G~~fV~f~~~e~A~~Ai~~lnG~--~f~GR~i~v~~~~~~~y~~   97 (114)
T 3s6e_A           54 AQGNVYVKCPSIAAAIAAVNALHGR--WFAGKMITAAYVPLPTYHN   97 (114)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHHTTC--EETTEECEEEEECHHHHHH
T ss_pred             CcEEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEEcHHHHHH
Confidence            4788999999999999999988766  8899999999998765543

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=97.00  E-value=0.001  Score=42.12  Aligned_cols=39  Identities=15%  Similarity=0.177  Sum_probs=34.4

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |+.|||||++.++|..++......  .+.|+++.++|++.+
T Consensus        65 kg~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~  103 (108)
T 2jvo_A           65 NGFAFVEFEEAESAAKAIEEVHGK--SFANQPLEVVYSKLP  103 (108)
T ss_dssp             TTEEEEECSSHHHHHHHHHHHTTC--EETTEECEEESCSCC
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEecCC
Confidence            678999999999999999977655  679999999999764

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.99  E-value=0.00067  Score=41.97  Aligned_cols=42  Identities=17%  Similarity=0.229  Sum_probs=35.5

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      .|..|||||++.++|..++..+...  .+.|+++.+.+++.++-
T Consensus        56 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~   97 (105)
T 1x5u_A           56 HQGYGFVEFLSEEDADYAIKIMDMI--KLYGKPIRVNKASAHNK   97 (105)
T ss_dssp             BCSCEEEEESSHHHHHHHHHHSSSC--BCSSCBCEEEETTTTSC
T ss_pred             CCcEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEECCCCCc
Confidence            3568999999999999999987654  68999999999987644

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=96.99  E-value=0.00075  Score=42.64  Aligned_cols=37  Identities=14%  Similarity=0.220  Sum_probs=32.0

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN   44 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~   44 (94)
                      |..|||||++.++|..++..+...  .+.|+++.++|++
T Consensus        82 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~ak  118 (118)
T 2khc_A           82 KCFGFVSFDNPDSAQVAIKAMNGF--QVGTKRLKVQLKK  118 (118)
T ss_dssp             CCEEEEEEESSHHHHHHHHHCCCC--EETTEECCEEEC-
T ss_pred             CcEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEecC
Confidence            678999999999999999976654  7899999999874

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=96.98  E-value=0.00078  Score=43.08  Aligned_cols=39  Identities=13%  Similarity=0.031  Sum_probs=34.3

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |..|||+|++.++|..++..+...  .+.|+++.++++...
T Consensus        48 rG~aFV~f~~~~~A~~Ai~~lng~--~~~gr~i~V~~a~~~   86 (110)
T 3s8s_A           48 LGLARVLFTSTRGAKETVKNLHLT--SVMGNIIHAQLDIKG   86 (110)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECSTT
T ss_pred             eeEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEECCCC
Confidence            568999999999999999987655  789999999998754

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=96.97  E-value=0.0015  Score=41.63  Aligned_cols=44  Identities=23%  Similarity=0.295  Sum_probs=37.5

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK   49 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~   49 (94)
                      +.|..|||+|++.++|..++......  .+.||++.+.|+......
T Consensus        54 ~~~G~~FV~f~~~~~A~~Ai~~lnG~--~~~Gr~i~v~~a~~~~f~   97 (105)
T 2pe8_A           54 DEAVRIFLEFERVESAIKAVVDLNGR--YFGGRVVKACFYNLDKFR   97 (105)
T ss_dssp             TTSEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCHHHHH
T ss_pred             CCcEEEEEEECCHHHHHHHHHHHCCC--EECCcEEEEEEcCHHHhh
Confidence            34789999999999999999988766  789999999999865443

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.96  E-value=0.00057  Score=42.26  Aligned_cols=42  Identities=21%  Similarity=0.210  Sum_probs=35.8

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      .|..|||||++.++|..++..+...  .+.|+++.+.+++.+.-
T Consensus        54 ~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~~~   95 (103)
T 2dnm_A           54 PRGFAFVRFHDRRDAQDAEAAMDGA--ELDGRELRVQVARYGRR   95 (103)
T ss_dssp             BCSCEEEEESSSSHHHHHHHHHSSC--CBTTBCCEEEECSSCCS
T ss_pred             CCeEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEEECCcCCC
Confidence            3678999999999999999987655  58999999999987543

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=96.96  E-value=0.0015  Score=43.10  Aligned_cols=41  Identities=20%  Similarity=0.302  Sum_probs=35.6

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      +.|..|||||++.++|..++......  .+.|+++.+.|++.+
T Consensus       134 ~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~i~v~~a~~k  174 (175)
T 1fje_B          134 KSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVSLYYTGEK  174 (175)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHTEE--EETTEEEEEEECSSC
T ss_pred             CCceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEecCCC
Confidence            45788999999999999999987754  789999999999754

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=96.95  E-value=0.00061  Score=42.22  Aligned_cols=39  Identities=13%  Similarity=0.128  Sum_probs=33.9

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |..|||||++.++|..++..+...  .+.|+++.++++..+
T Consensus        65 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~  103 (106)
T 1p27_B           65 KGYTLVEYETYKEAQAAMEGLNGQ--DLMGQPISVDWCFVR  103 (106)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHTTC--BSSSSBCEEEESEES
T ss_pred             eeEEEEEECCHHHHHHHHHHhcCC--EECCcEEEEEeecCC
Confidence            678999999999999999977655  678999999998754

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.94  E-value=0.0012  Score=41.34  Aligned_cols=42  Identities=14%  Similarity=0.118  Sum_probs=35.4

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK   49 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~   49 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+.+++...-.
T Consensus        56 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~   97 (114)
T 2do0_A           56 RGIGTVTFEQSIEAVQAISMFNGQ--LLFDRPMHVKMDERALPK   97 (114)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECSCCCCC
T ss_pred             eeEEEEEECCHHHHHHHHHHhCCC--EeCCCEEEEEEcccCCCC
Confidence            568999999999999999977654  689999999999865443

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=96.93  E-value=0.0012  Score=42.23  Aligned_cols=44  Identities=16%  Similarity=0.262  Sum_probs=37.1

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      .|..|||||++.++|..++..+...  .+.|+++.+.+++.+.-..
T Consensus        47 ~~g~afV~F~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~~~   90 (116)
T 2fy1_A           47 SRGFAFITFENPADAKNAAKDMNGK--SLHGKAIKVEQAKKPSFQS   90 (116)
T ss_dssp             CCCEEEEECSSHHHHHHHHHHCSSC--BCSSSBCEEEECCCSSCSS
T ss_pred             cccEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEECCCCCCCC
Confidence            4678999999999999999876654  6899999999998766544

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=96.91  E-value=0.002  Score=41.04  Aligned_cols=43  Identities=12%  Similarity=0.158  Sum_probs=37.0

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      +.|..|||||++.++|..++......  .+.||++.+.|+.....
T Consensus        57 ~~~G~~fV~f~~~~~A~~Ai~~lnG~--~f~GR~i~v~~~~~~~f   99 (105)
T 3v4m_A           57 PGCGKIFVEFTSVFDCQKAMQGLTGR--KFANRVVVTKYCDPDSY   99 (105)
T ss_dssp             TTTTEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEEECHHHH
T ss_pred             CCcEEEEEEECCHHHHHHHHHHhCCC--EeCCCEEEEEEeCHHHH
Confidence            34788999999999999999988766  78999999999876543

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.90  E-value=0.0017  Score=42.71  Aligned_cols=47  Identities=6%  Similarity=0.034  Sum_probs=36.3

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCc---eEeCeEEEEEeccceeee
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVA---QLRGRAVYVQFSNHKELK   49 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~---~irg~~vyiqyS~~~eL~   49 (94)
                      +.+|.-|||||++.++|..+++......+   .=.|+++|+.|...-.-.
T Consensus        60 ~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~~  109 (114)
T 2cq2_A           60 PPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWS  109 (114)
T ss_dssp             CTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCCS
T ss_pred             eCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCccc
Confidence            34678999999999999999998776522   115999999998754443

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.0013  Score=42.56  Aligned_cols=37  Identities=14%  Similarity=0.270  Sum_probs=32.7

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN   44 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~   44 (94)
                      |..|||+|++.++|..++......  .+.|+++.+.|++
T Consensus       129 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~i~v~~a~  165 (166)
T 3md3_A          129 RGYGFVSFTSQDDAQNAMDSMQGQ--DLNGRPLRINWAA  165 (166)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHTTC--EETTEECEEEESC
T ss_pred             ceEEEEEeCCHHHHHHHHHHhCCC--ccCCcEEEEEecC
Confidence            557999999999999999987655  6899999999986

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=96.85  E-value=0.0018  Score=41.59  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=31.3

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS   43 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS   43 (94)
                      .|..|||||++.++|..++......  .+.|+++.++++
T Consensus       104 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~A  140 (140)
T 2ku7_A          104 HRGFAFVEFELAEDAAAAIDNMNES--ELFGRTIRVNLA  140 (140)
T ss_dssp             CCSEEEEEESCHHHHHHHHHHSTEE--EETTEEEEEEC-
T ss_pred             cCcEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEeC
Confidence            4778999999999999999876654  788999999875

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.84  E-value=0.0018  Score=40.85  Aligned_cols=41  Identities=22%  Similarity=0.208  Sum_probs=34.8

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      .|.-|||||++.++|..++.....   .+.|+++.+.++..+.-
T Consensus        58 ~~g~afV~f~~~~~a~~Ai~~~~~---~~~g~~l~V~~a~~~~~   98 (116)
T 2cqd_A           58 SRGYGFVTMADRAAAERACKDPNP---IIDGRKANVNLAYLGAK   98 (116)
T ss_dssp             CCSEEEEEESSHHHHHHHHTCSSC---EETTEECEEEESTTTCC
T ss_pred             cceEEEEEECCHHHHHHHHHhCCC---cCCCEEEEEEEcccCCC
Confidence            356899999999999999988663   79999999999976543

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=96.82  E-value=0.0013  Score=41.19  Aligned_cols=41  Identities=17%  Similarity=0.189  Sum_probs=34.9

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      .|..|||||++.++|..++......  .+.|+++.+.+++...
T Consensus        61 ~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~~  101 (110)
T 1wf1_A           61 HKGYAFVQYSNERHARAAVLGENGR--VLAGQTLDINMAGEPK  101 (110)
T ss_dssp             ETTEEEEECSSSHHHHHHHHHHTTC--EETTEECCEEESCCCC
T ss_pred             eCCEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEECCCCC
Confidence            3678999999999999999877654  7899999999997543

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=96.82  E-value=0.0011  Score=42.92  Aligned_cols=42  Identities=7%  Similarity=0.152  Sum_probs=35.7

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK   49 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~   49 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+.+++.+.-.
T Consensus        84 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~  125 (139)
T 1u6f_A           84 RGYGFVKFQSGSSAQQAIAGLNGF--NILNKRLKVALAASGHQR  125 (139)
T ss_dssp             EEEEEEEESSHHHHHHHHHHTTTE--ECSSCEEEEEESSCCCCC
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEECCCCCCC
Confidence            668999999999999999976644  689999999999876543

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=96.81  E-value=0.0027  Score=41.89  Aligned_cols=84  Identities=6%  Similarity=-0.067  Sum_probs=50.4

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhcc-----CceEeCeEEEEEeccceeeec-cCCCCCCcEEEEEEcccCCceeHhHHHh
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTC-----VAQLRGRAVYVQFSNHKELKT-DQTHSNALLLHLTIGIILRPATHYQVHL   78 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~-----p~~irg~~vyiqyS~~~eL~~-~~s~~~n~ILL~TI~n~~ypItvdvlh~   78 (94)
                      -|..|||||.+.++|..++.-+...     .....+............... .....+..-|  =|.|.-+.+|-|-|..
T Consensus        12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~v~nl~~~~~~~~l~~   89 (158)
T 2kn4_A           12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSL--KVDNLTYRTSPDTLRR   89 (158)
T ss_dssp             CEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEE--EEESCCTTCCHHHHHH
T ss_pred             ccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEE--EEeCCCCCCCHHHHHH
Confidence            4688999999999999998765532     112222211111111111000 1112233443  3679999999999999


Q ss_pred             hhccccceEEEE
Q psy9170          79 IRSACQVYLIVC   90 (94)
Q Consensus        79 i~s~~g~~~~v~   90 (94)
                      +|++||.+.-|-
T Consensus        90 ~F~~~G~v~~~~  101 (158)
T 2kn4_A           90 VFEKYGRVGDVY  101 (158)
T ss_dssp             HHHHHSCEEEEE
T ss_pred             HHHhcCCeEEEE
Confidence            999999776543

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=96.80  E-value=0.0012  Score=43.05  Aligned_cols=38  Identities=8%  Similarity=0.143  Sum_probs=33.0

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |..|||+|++.++|..++.   .+...+.|+++.+.++..+
T Consensus       129 ~g~afV~f~~~~~a~~A~~---~~~~~~~g~~i~V~~a~pk  166 (167)
T 2cjk_A          129 RGFGFVTYDSADAVDRVCQ---NKFIDFKDRKIEIKRAEPR  166 (167)
T ss_dssp             SEEEEEEESSHHHHHHHHH---CSEECSSSSCEEEEECCCC
T ss_pred             ceEEEEEECCHHHHHHHHh---CCCEEeCCeEEEEeecCCC
Confidence            5689999999999999997   3556889999999998765

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=96.79  E-value=0.00074  Score=44.24  Aligned_cols=41  Identities=24%  Similarity=0.199  Sum_probs=34.9

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      +.|..|||||++.++|..++..+...  .+.|+++.++++..+
T Consensus        86 ~~~G~afV~F~~~~~A~~Ai~~lng~--~i~g~~l~V~~a~~~  126 (129)
T 2kxn_B           86 RSRGFAFVYFENVDDAKEAKERANGM--ELDGRRIRVDFSITK  126 (129)
T ss_dssp             CCCCEEEEEESCHHHHHHHHHHHTTC--CSSSSCCEESCCSSS
T ss_pred             ccceEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEecCC
Confidence            34678999999999999999987654  678999999998754

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=96.79  E-value=0.00067  Score=42.96  Aligned_cols=39  Identities=18%  Similarity=0.291  Sum_probs=33.9

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+.+++.+
T Consensus        68 ~g~afV~F~~~~~A~~Ai~~l~g~--~i~g~~l~V~~a~~k  106 (108)
T 2jrs_A           68 KGYGFITFSDSECAKKALEQLNGF--ELAGRPMKVGHVTER  106 (108)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHTTC--CSSSSCCEEECSCSS
T ss_pred             ceEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEEcccC
Confidence            568999999999999999877654  689999999998754

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=96.78  E-value=0.0029  Score=37.54  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=29.2

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEE
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQ   41 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiq   41 (94)
                      +.|..|||||++.++|..++ ....  ..+.|+++.++
T Consensus        51 ~~kg~afV~f~~~~~a~~A~-~l~g--~~~~g~~l~V~   85 (87)
T 2hzc_A           51 QDKNFAFLEFRSVDETTQAM-AFDG--IIFQGQSLKIR   85 (87)
T ss_dssp             SSSSEEEEEESSHHHHHHHG-GGTT--CEETTEECEEE
T ss_pred             CCCcEEEEEcCCHHHHHHHH-hcCC--CEECCeEEEEe
Confidence            45889999999999999999 5543  47899998876

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=96.77  E-value=0.00066  Score=40.94  Aligned_cols=41  Identities=12%  Similarity=0.190  Sum_probs=34.7

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      .|..|||||++.++|..++..+...  .+.|+++.+.+++.+.
T Consensus        47 ~~g~afV~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~a~~~~   87 (92)
T 2dgv_A           47 SKGCGVVKFESPEVAERACRMMNGM--KLSGREIDVRIDRNAS   87 (92)
T ss_dssp             EEEEEEEEESSHHHHHHHHHHHTTC--CBTTBCCCCEECSCCS
T ss_pred             cceEEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEEcCCCC
Confidence            3678999999999999999987655  5889999999987643

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.77  E-value=0.0019  Score=39.84  Aligned_cols=40  Identities=13%  Similarity=0.165  Sum_probs=33.4

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      |..|||||++.++|..++ -.  +...+.|+++.+.+++.+.-
T Consensus        56 ~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V~~a~~~~~   95 (103)
T 2dng_A           56 KGFCYVEFDEVDSLKEAL-TY--DGALLGDRSLRVDIAEGRKQ   95 (103)
T ss_dssp             EEEEEEEESSHHHHHHHG-GG--TTCEETTEECEEEECCCCCC
T ss_pred             ceEEEEEECCHHHHHHHH-hh--CCCeECCeEEEEEEecCCCC
Confidence            568999999999999999 43  44689999999999986543

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=96.76  E-value=0.0026  Score=40.18  Aligned_cols=39  Identities=8%  Similarity=0.151  Sum_probs=33.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      |..|||+|++.++|..++...   ...+.|+++.+.++..++
T Consensus        67 kg~afV~f~~~~~A~~Ai~~~---~~~l~g~~l~V~~a~~~~  105 (109)
T 2rs2_A           67 RGFGFVTFMDQAGVDKVLAQS---RHELDSKTIDPKVAFPRR  105 (109)
T ss_dssp             TTCEEEEESSHHHHHHHHHSS---CEEETTEEEEEEECCCCC
T ss_pred             CcEEEEEECCHHHHHHHHHHC---CCcCCCEEEEEEEccCCC
Confidence            678999999999999999874   268999999999987543

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.75  E-value=0.0009  Score=41.46  Aligned_cols=40  Identities=15%  Similarity=0.196  Sum_probs=34.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      |..|||||++.++|..++..   +...+.|+++.+.+++.++-
T Consensus        58 ~g~afV~f~~~~~a~~a~~~---~~~~~~g~~l~V~~a~~~~~   97 (105)
T 2dh8_A           58 RGFGFVKFKDPNCVGTVLAS---RPHTLDGRNIDPKPCTPRGM   97 (105)
T ss_dssp             EEEEEEEESSTTHHHHHHHH---CSEEETTEEEBCCCSCCSSC
T ss_pred             ceEEEEEECCHHHHHHHHHh---CCCeECCEEEEEEEccCCCC
Confidence            46899999999999999987   56789999999999986654

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=96.75  E-value=0.00089  Score=41.11  Aligned_cols=41  Identities=7%  Similarity=0.127  Sum_probs=34.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      |..|||||++.++|..++......  .+.|+++.+++++.+.-
T Consensus        45 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~~~   85 (96)
T 2kvi_A           45 NAFGFIQFDNPQSVRDAIECESQE--MNFGKKLILEVSSSNAR   85 (96)
T ss_dssp             TTEEEEEESCHHHHHHHHHHHTCS--SCBTTTBCEEEEECCCC
T ss_pred             CCEEEEEECCHHHHHHHHHHcCCC--eeCCcEEEEEEcCcCCC
Confidence            678999999999999999987655  56799999999976543

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=96.75  E-value=0.0024  Score=38.04  Aligned_cols=37  Identities=22%  Similarity=0.285  Sum_probs=31.3

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      |.-|||||++.++|..++ ...  ...+.|+++.+++++.
T Consensus        48 ~g~afV~f~~~~~a~~a~-~~~--g~~~~g~~l~V~~a~~   84 (89)
T 3ucg_A           48 KGFAYIEFSDKESVRTSL-ALD--ESLFRGRQIKVIPKRT   84 (89)
T ss_dssp             CEEEEEEESSTHHHHHHG-GGT--TCEETTEECEEEETTT
T ss_pred             ceEEEEEECCHHHHHHHH-hcC--CCEECCcEEEEEEccC
Confidence            678999999999999999 443  4478999999999864

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=96.73  E-value=0.00058  Score=41.50  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=30.9

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |..|||||++.++|..++......  .+.|+++.+.++...
T Consensus        45 kG~afV~f~~~~~a~~Ai~~l~g~--~~~gr~i~V~~~~~~   83 (90)
T 3p5t_L           45 KGFALVGVGSEASSKKLMDLLPKR--ELHGQNPVVTPSNKL   83 (90)
T ss_dssp             EEEEEECC-CHHHHHHHHHHGGGS--CSSSCCCEECCC---
T ss_pred             CcEEEEEECCHHHHHHHHHHcCCC--eeCCEEEEEEECCCC
Confidence            567999999999999999887765  679999999988754

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.73  E-value=0.0021  Score=39.62  Aligned_cols=38  Identities=13%  Similarity=0.191  Sum_probs=32.6

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      |..|||||++.++|..++.-    ...+.|+++.+.+++.++
T Consensus        57 ~g~afV~f~~~~~a~~A~~~----~~~~~g~~l~v~~a~~~~   94 (103)
T 2cqg_A           57 KGFGFVRFTEYETQVKVMSQ----RHMIDGRWCDCKLPNSKQ   94 (103)
T ss_dssp             EEEEEEEESSHHHHHHHHHS----CEEETTEEEEEECCCTTC
T ss_pred             cceEEEEECCHHHHHHHHHc----CCeeCCeEEEEEecCCCC
Confidence            55799999999999999983    348999999999998753

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.72  E-value=0.00069  Score=41.74  Aligned_cols=41  Identities=20%  Similarity=0.220  Sum_probs=34.9

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+.++..+.-
T Consensus        50 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~   90 (104)
T 1p1t_A           50 KGYGFCEYQDQETALSAMRNLNGR--EFSGRALRVDNAASEKN   90 (104)
T ss_dssp             EEEEEEECSCHHHHHHHHHHSSSB--SCSSSCBEEEETTCTTH
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCC--eeCCcEEEEEeCCCccc
Confidence            678999999999999999877654  57999999999987543

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=96.72  E-value=0.0035  Score=40.47  Aligned_cols=41  Identities=15%  Similarity=0.156  Sum_probs=34.7

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      +.|.-|||||++.++|..++..+...  .+.|+++.+.+++..
T Consensus        65 ~~rGfaFV~F~~~e~A~~Ai~~lng~--~l~Gr~i~V~~a~~~  105 (111)
T 2jvr_A           65 DFDGTGALEFPSEEILVEALERLNNI--EFRGSVITVERDDNP  105 (111)
T ss_dssp             SSSCCEEEEESSHHHHHHHHHHTTTE--EETTEEEEEEESCC-
T ss_pred             CCCCEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEECCCC
Confidence            45789999999999999999877644  789999999998753

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=96.71  E-value=0.0016  Score=41.55  Aligned_cols=40  Identities=13%  Similarity=0.118  Sum_probs=34.6

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      |..|||||++.++|..++..+...  .+.|+++.++|+..+.
T Consensus        64 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~  103 (126)
T 3ex7_B           64 KGYTLVEYETYKEAQAAMEGLNGQ--DLMGQPISVDWCFVRG  103 (126)
T ss_dssp             CSCEEEEESSHHHHHHHHHHHTTC--BSSSSBCEEEESEESS
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCC--eeCCeEEEEEEecCCC
Confidence            678999999999999999987654  5799999999997654

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=96.70  E-value=0.0016  Score=45.64  Aligned_cols=42  Identities=19%  Similarity=0.222  Sum_probs=36.3

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEe-CeEEEEEeccce
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLR-GRAVYVQFSNHK   46 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~ir-g~~vyiqyS~~~   46 (94)
                      ++.|+.|||||++.++|..++......  .+. |+++.+.|++.+
T Consensus       186 ~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~~g~~l~v~~a~~~  228 (229)
T 2adc_A          186 QKDRKMALIQMGSVEEAVQALIDLHNH--DLGENHHLRVSFSKST  228 (229)
T ss_dssp             SSSTTCEEEEESSHHHHHHHHHHHTTC--BSSSSCBCEEEECSSC
T ss_pred             ECCCcEEEEEECCHHHHHHHHHHHCCC--ccCCCCeEEEEEecCC
Confidence            557889999999999999999988765  457 999999998753

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=96.67  E-value=0.0012  Score=44.73  Aligned_cols=42  Identities=19%  Similarity=0.222  Sum_probs=36.0

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEe-CeEEEEEeccce
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLR-GRAVYVQFSNHK   46 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~ir-g~~vyiqyS~~~   46 (94)
                      +.+|+.|||||++.++|..++......  .+. |+++.+.|++.+
T Consensus       155 ~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~~g~~l~v~~a~~~  197 (198)
T 1qm9_A          155 QKDRKMALIQMGSVEEAVQALIDLHNH--DLGENHHLRVSFSKST  197 (198)
T ss_dssp             STTSSCEEEECSSHHHHHHHHHHHTSS--CCSSCCSCCEEEECCC
T ss_pred             eCCCcEEEEEeCCHHHHHHHHHHhcCC--ccCCCCeEEEEeeccc
Confidence            456889999999999999999988766  457 999999998753

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=96.63  E-value=0.0024  Score=39.47  Aligned_cols=43  Identities=14%  Similarity=0.089  Sum_probs=34.4

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCc-eEeCeEEEEEecccee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVA-QLRGRAVYVQFSNHKE   47 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~-~irg~~vyiqyS~~~e   47 (94)
                      .|..|||+|++.++|..++........ ...|+++.+.++..+.
T Consensus        54 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~   97 (106)
T 2dgp_A           54 HKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSES   97 (106)
T ss_dssp             CCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCS
T ss_pred             cceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccc
Confidence            367899999999999999997765421 1278999999998654

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=96.63  E-value=0.0025  Score=42.07  Aligned_cols=41  Identities=22%  Similarity=0.259  Sum_probs=34.8

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      .|.-|||+|++.++|..++......  .+.|+++.+.+++.+.
T Consensus       111 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~  151 (158)
T 2kn4_A          111 SRGFAFVRFHDKRDAEDAMDAMDGA--VLDGRELRVQMARYGR  151 (158)
T ss_dssp             SCCEEEEEESBHHHHHHHHHHSTTE--ESSSSEEEEEEECCSS
T ss_pred             cceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEECCCCC
Confidence            4668999999999999999876654  6899999999998653

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.62  E-value=0.0022  Score=40.31  Aligned_cols=40  Identities=20%  Similarity=0.223  Sum_probs=33.3

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      .|.-|||||++.++|..++ .+.  ...+.|+++.+++++.+.
T Consensus        66 ~~g~afV~f~~~~~a~~A~-~l~--g~~~~g~~l~V~~a~~~~  105 (114)
T 2cq4_A           66 SKGIAYVEFCEIQSVPLAI-GLT--GQRLLGVPIIVQASQAEK  105 (114)
T ss_dssp             CCCCEEEEESCGGGHHHHH-HHT--TEEETTEEEEEEEHHHHH
T ss_pred             cCcEEEEEeCcHHHHHHHH-HcC--CCEeCCeEEEEEecCCCc
Confidence            3678999999999999999 544  447899999999987643

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.62  E-value=0.0018  Score=41.57  Aligned_cols=42  Identities=19%  Similarity=0.127  Sum_probs=35.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      |.-|||||++.++|..++. .  +...+.|+++.+.+|+.++...
T Consensus        61 ~G~afV~F~~~~~a~~Al~-~--~g~~~~gr~i~V~~a~~~~~~~  102 (118)
T 2db1_A           61 SGEAFVELESEDDVKLALK-K--DRESMGHRYIEVFKSHRTEMDW  102 (118)
T ss_dssp             EEEEEEEBSSHHHHHHHGG-G--TTEEETTEEEEEEEECHHHHHH
T ss_pred             CeEEEEEECCHHHHHHHHh-c--CCCeECCeEEEEEECCHHHHHH
Confidence            5689999999999999999 4  3458999999999999887543

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=96.60  E-value=0.0014  Score=40.57  Aligned_cols=39  Identities=13%  Similarity=0.130  Sum_probs=32.2

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      .|.-|||||++.++|..++ -..  ...+.|+++.+++++.+
T Consensus        60 ~~g~afV~f~~~~~a~~Ai-~l~--g~~~~g~~l~V~~a~~~   98 (100)
T 2j76_E           60 LKGFGYAEFEDLDSLLSAL-SLN--EESLGNRRIRVDVADQA   98 (100)
T ss_dssp             CCSCEEEEECCHHHHHHHH-HTT--TCCBTTBCCCCEECCCS
T ss_pred             cCeEEEEEECCHHHHHHHH-hcC--CCEECCeEEEEEeccCC
Confidence            3678999999999999999 444  34689999999998753

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=96.59  E-value=0.0019  Score=39.82  Aligned_cols=41  Identities=15%  Similarity=0.222  Sum_probs=34.4

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeC---eEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRG---RAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg---~~vyiqyS~~~eL   48 (94)
                      |..|||+|++.++|..++......  .+.|   +++.++++..+.-
T Consensus        56 ~g~afV~f~~~~~A~~Ai~~l~g~--~~~gg~~~~l~V~~a~~~~~   99 (105)
T 2dnh_A           56 KGCAFVKFSSHTEAQAAIHALHGS--QTMPGASSSLVVKFADTDKE   99 (105)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHSSC--CCCTTCSSCCEEEESCSSCC
T ss_pred             CcEEEEEeCCHHHHHHHHHHHcCC--ccCCCCCccEEEEECccCcc
Confidence            678999999999999999977655  4666   9999999987654

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.59  E-value=0.0023  Score=39.90  Aligned_cols=43  Identities=19%  Similarity=0.224  Sum_probs=36.5

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      .|.-|||||++.++|..++.. .  --.+.||++.+..++.+++..
T Consensus        56 ~~G~afV~F~~~~~a~~A~~~-~--~~~~~gr~i~v~~~~~~~~~~   98 (104)
T 1wg5_A           56 STGEAFVQFASQEIAEKALKK-H--KERIGHRYIEIFKSSRAEVRT   98 (104)
T ss_dssp             BCSEEEEEESSHHHHHHHHTT-T--TCCSSSSCCEEEEECTTTSCC
T ss_pred             cceEEEEEECCHHHHHHHHHh-C--cchhCCcEEEEEECCHHHHHH
Confidence            367899999999999999987 3  457899999999998887754

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=96.58  E-value=0.0028  Score=39.79  Aligned_cols=64  Identities=14%  Similarity=0.146  Sum_probs=47.4

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQ   84 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g   84 (94)
                      .+..|||||++.++|..++......  .+.|+++.++|++.+.-.               .|.....+-+-|-.+|++||
T Consensus        46 ~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~~~---------------~~~~~~~~~~~l~~~~~~~g  108 (115)
T 3lqv_A           46 TRGTAYVVYEDIFDAKNAVDHLSGF--NVSNRYLVVLYYNANRAF---------------QKMDTKKKEEQLKLLKEKYG  108 (115)
T ss_dssp             TTTCEEEEESSHHHHHHHHHHHTTC--BSSSCBCEEEECCHHHHT---------------TTSCHHHHHHHHHHHHHHHC
T ss_pred             CCcEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEecCChhh---------------hhhhHhHhHHHHHHHHHHhC
Confidence            4679999999999999999987655  678999999999864322               12233455666777777776


Q ss_pred             c
Q psy9170          85 V   85 (94)
Q Consensus        85 ~   85 (94)
                      .
T Consensus       109 ~  109 (115)
T 3lqv_A          109 I  109 (115)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=96.57  E-value=0.0016  Score=44.15  Aligned_cols=41  Identities=15%  Similarity=0.170  Sum_probs=35.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      |..|||||++.++|..++......  .+.|+++.+.|+..+..
T Consensus       167 ~g~afV~F~~~~~A~~A~~~l~g~--~~~g~~i~V~~a~~~~~  207 (216)
T 2qfj_A          167 KGYGFIEYEKAQSSQDAVSSMNLF--DLGGQYLRVGKAVTPPM  207 (216)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTC--BCSSSBCEEEECSSCSS
T ss_pred             CceEEEEecCHHHHHHHHHHccCC--EeCCcEEEEEEecCCCC
Confidence            678999999999999999988765  68999999999987644

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.54  E-value=0.0018  Score=39.50  Aligned_cols=39  Identities=18%  Similarity=0.233  Sum_probs=33.3

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeE----EEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRA----VYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~----vyiqyS~~~   46 (94)
                      |..|||||++.++|..++..+...  .+.|++    +.++|++..
T Consensus        52 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~~~~~l~v~~a~~~   94 (99)
T 2div_A           52 AGYCFVEFADLATAEKCLHKINGK--PLPGATPAKRFKLNYATYS   94 (99)
T ss_dssp             EEEEEEECSCHHHHHHHHHTTTTS--EESSCSSCEECCEEETTCC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHcCC--ccCCCCcceeEEEeecCCC
Confidence            468999999999999999877654  788998    999998765

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=96.54  E-value=0.0025  Score=41.73  Aligned_cols=37  Identities=22%  Similarity=0.201  Sum_probs=32.4

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN   44 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~   44 (94)
                      |..|||+|++.++|..++......  .+.|+++.+.+++
T Consensus       136 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~As  172 (172)
T 2g4b_A          136 KGYAFCEYVDINVTDQAIAGLNGM--QLGDKKLLVQRAS  172 (172)
T ss_dssp             EEEEEEEESSTTHHHHHHHHHTTC--EETTEECEEEECC
T ss_pred             ceEEEEEeCCHHHHHHHHHHcCCC--EECCeEEEEEeCC
Confidence            567999999999999999977654  7899999999974

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=96.53  E-value=0.003  Score=41.79  Aligned_cols=39  Identities=15%  Similarity=0.203  Sum_probs=33.9

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |.-|||||++.++|..++..+...  .+.|+++.|++++..
T Consensus        81 ~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~  119 (156)
T 1h2v_Z           81 CGFCFVEYYSRADAENAMRYINGT--RLDDRIIRTDWDAGF  119 (156)
T ss_dssp             EEEEEEEESSHHHHHHHHHHTTTS--EETTEECEEEEESCC
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEECCCC
Confidence            568999999999999999977644  789999999999763

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.53  E-value=0.0018  Score=39.44  Aligned_cols=41  Identities=24%  Similarity=0.325  Sum_probs=34.3

Q ss_pred             eEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc
Q psy9170           8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD   51 (94)
Q Consensus         8 QAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~   51 (94)
                      .|||||++.++|..++. ..  ...+.|+++.++++..++-...
T Consensus        47 ~afV~f~~~~~a~~ai~-l~--g~~~~g~~l~V~~a~~~~~~~~   87 (94)
T 2e5g_A           47 FAIVEMGDVGAREAVLS-QS--QHSLGGHRLRVRPREQKEFQSP   87 (94)
T ss_dssp             EEEEEESSHHHHHHHHT-CS--CCEETTEECCCBCSCCSCCCCC
T ss_pred             EEEEEECCHHHHHHHHh-cC--CeEECCEEEEEEECCcCCCCCC
Confidence            89999999999999999 54  4578999999998876655444

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=96.52  E-value=0.0018  Score=37.50  Aligned_cols=36  Identities=6%  Similarity=0.050  Sum_probs=30.1

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS   43 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS   43 (94)
                      .|..|||||++.++|..++..   ....+.|+++.++++
T Consensus        40 ~~g~afV~f~~~~~a~~Ai~~---~~~~~~g~~l~v~~a   75 (75)
T 1iqt_A           40 RRGFCFITFKEEEPVKKIMEK---KYHNVGLSKCEIKVA   75 (75)
T ss_dssp             SCCCEEEECSSSHHHHHHHTT---SSCCBTTBCCCEEEC
T ss_pred             cCCEEEEEECCHHHHHHHHHh---CCCeECCEEEEEEEC
Confidence            367899999999999999984   445789999988764

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.51  E-value=0.0044  Score=39.16  Aligned_cols=40  Identities=15%  Similarity=0.073  Sum_probs=34.4

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      .|.-|||+|++.++|..++......  .+.|+++.++|+..+
T Consensus        63 ~~G~afV~f~~~~~A~~Ai~~lng~--~~~gr~l~v~~a~~~  102 (112)
T 2dit_A           63 PDGVASVSFRDPEEADYCIQTLDGR--WFGGRQITAQAWDGT  102 (112)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHSTTC--EETTEECEEEECCSC
T ss_pred             CCEEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEEEeCCC
Confidence            3778999999999999999877654  789999999998753

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=96.49  E-value=0.0022  Score=40.02  Aligned_cols=39  Identities=21%  Similarity=0.158  Sum_probs=33.5

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCe-EEEEEeccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGR-AVYVQFSNH   45 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~-~vyiqyS~~   45 (94)
                      .|..|||||++.++|..++......  .+.|+ ++.+++++.
T Consensus        60 ~~G~afV~f~~~~~A~~Ai~~l~g~--~~~g~~~l~V~~a~~   99 (105)
T 2nlw_A           60 TKGYIFLEYASPAHAVDAVKNADGY--KLDKQHTFRVNLFTD   99 (105)
T ss_dssp             SCCEEEEEECSSSHHHHHHHHCSSE--ECSTTCEEEEECSCC
T ss_pred             eeeEEEEEECCHHHHHHHHHHhCCc--ccCCCceEEEEEcch
Confidence            4789999999999999999976654  78898 999999874

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=96.48  E-value=0.0026  Score=36.94  Aligned_cols=35  Identities=9%  Similarity=0.119  Sum_probs=29.2

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS   43 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS   43 (94)
                      |.-|||||++.++|..+++ .  +...+.|+++.++++
T Consensus        41 ~g~afV~f~~~~~a~~a~~-~--~~~~~~g~~l~v~~A   75 (75)
T 2mss_A           41 RGFGFVTFESEDIVEKVCE-I--HFHEINNKMVECKKA   75 (75)
T ss_dssp             CBEEEEECSCHHHHHHHHS-S--SCCCSSSCCCEEECC
T ss_pred             CcEEEEEECCHHHHHHHHH-C--CCCEECCEEEEEEeC
Confidence            5689999999999999987 3  455789999988764

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=96.46  E-value=0.0019  Score=37.49  Aligned_cols=35  Identities=9%  Similarity=0.195  Sum_probs=30.6

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS   43 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS   43 (94)
                      |.-|||+|++.++|..++....   ..+.|+++.++++
T Consensus        42 ~g~afV~f~~~~~a~~a~~~~~---~~~~g~~l~v~~a   76 (77)
T 1uaw_A           42 RGFGFVTFMDQAGVDKVLAQSR---HELDSKTIDPKVA   76 (77)
T ss_dssp             SSEEEECCCCTTHHHHHHHTTT---CCCSSCCCEEEEC
T ss_pred             CceEEEEEcCHHHHHHHHHhCC---CccCCEEEEEEec
Confidence            6789999999999999999866   5789999988765

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=96.46  E-value=0.002  Score=43.62  Aligned_cols=43  Identities=19%  Similarity=0.183  Sum_probs=36.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      |.-|||||++.++|..++..+...  .+.|+++.+++++.+.+..
T Consensus        99 kGfaFV~f~~~~~A~~Ai~~lng~--~~~Gr~l~V~~a~~~~~~~  141 (156)
T 3n9u_C           99 KGYAEVVVASENSVHKLLELLPGK--VLNGEKVDVRPATRQNLSQ  141 (156)
T ss_dssp             EEEEEEEESCHHHHHHHHHHSTTC--EETTEECEEEECCHHHHHH
T ss_pred             ceEEEEEECCHHHHHHHHHHcCCC--EECCeEeEEEEcCCCcchh
Confidence            568999999999999999987655  7899999999998765543

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=96.43  E-value=0.0015  Score=39.20  Aligned_cols=40  Identities=25%  Similarity=0.356  Sum_probs=30.7

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      |.-|||||++.+ |..++......  .+.|+++.+.++..+..
T Consensus        43 ~g~afV~f~~~~-a~~a~~~l~g~--~~~g~~l~V~~a~~~~~   82 (90)
T 2ki2_A           43 KGFGFVEMQEES-VSEAIAKLDNT--DFMGRTIRVTEANPKKS   82 (90)
T ss_dssp             CEEEEEEECTTH-HHHHHHTSCSS--CCSSSSCSEEEC-----
T ss_pred             ceEEEEEECCHH-HHHHHHHhCCC--EECCeEEEEEEcCCCCC
Confidence            668999999999 99998876654  58899999999987654

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.42  E-value=0.00091  Score=41.28  Aligned_cols=42  Identities=17%  Similarity=0.169  Sum_probs=34.9

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCce-EeCeEEEEEeccceee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQ-LRGRAVYVQFSNHKEL   48 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~-irg~~vyiqyS~~~eL   48 (94)
                      .|..|||||++.++|..++......  . +.|+++.+.++..+.-
T Consensus        50 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~~g~~l~v~~a~~~~~   92 (104)
T 2dhg_A           50 SKGYGFVKFTDELEQKRALTECQGA--VGLGSKPVRLSVAIPKAS   92 (104)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHTTTC--CSSSSSCCCCCBCCCCCS
T ss_pred             ccceEEEEECCHHHHHHHHHHccCC--cccCCEeEEEEEccCCCc
Confidence            3678999999999999999976654  4 7899999999976543

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=96.42  E-value=0.0018  Score=40.25  Aligned_cols=39  Identities=13%  Similarity=0.138  Sum_probs=33.4

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeC-eEEEEEeccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRG-RAVYVQFSNH   45 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg-~~vyiqyS~~   45 (94)
                      .|..|||+|++.++|..++......  .+.| +++.++++..
T Consensus        53 ~kG~afV~f~~~~~A~~Ai~~lng~--~~~g~r~l~V~~a~~   92 (100)
T 3ns6_A           53 TKGFLFVECGSMNDAKKIIKSFHGK--RLDLKHRLFLYTMKD   92 (100)
T ss_dssp             ECSEEEEEESSHHHHHHHHHHHTTC--BSSSSCBCEEEESHH
T ss_pred             cceEEEEEECCHHHHHHHHHHhCCc--ccCCCeEEEEEECch
Confidence            3678999999999999999877654  6788 9999998864

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=96.41  E-value=0.0032  Score=41.44  Aligned_cols=40  Identities=30%  Similarity=0.267  Sum_probs=34.7

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      .|..|||||++.++|..++......  .+.|+++.+.+++.+
T Consensus       109 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~  148 (150)
T 2i2y_A          109 PPGFAFVEFEDPRDAADAVRELDGR--TLCGCRVRVELSNGE  148 (150)
T ss_dssp             SCSEEEEEESSHHHHHHHHHHHSSS--CSSSSCCEEEECCCC
T ss_pred             CCcEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEcCCC
Confidence            3789999999999999999977655  578999999998764

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=96.41  E-value=0.0026  Score=40.52  Aligned_cols=41  Identities=10%  Similarity=0.143  Sum_probs=35.1

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      .|.-|||||.|.++|..++.....  ..+.||++.+++.+..+
T Consensus        42 ~kGfaFVey~~~~eA~~Ai~~Ln~--~~l~gr~I~V~~A~e~~   82 (89)
T 2wbr_A           42 NQGIALCKYTTREEANKAQMALNN--CVLANTTIFAESPSENE   82 (89)
T ss_dssp             TTTEEEEEESSHHHHHHHHHHHTT--EEETTEEEEEECCCHHH
T ss_pred             CCcEEEEEECCHHHHHHHHHHhcC--CEECCcEEEEEECCHHH
Confidence            578899999999999999997664  58999999999986544

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=96.40  E-value=0.0056  Score=38.81  Aligned_cols=39  Identities=21%  Similarity=0.261  Sum_probs=32.3

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      .|..|||||++.++|..++ .+  +...+.|+++.+++++..
T Consensus        77 ~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V~~a~~~  115 (124)
T 2jwn_A           77 PKGYAYIEFAERNSVDAAV-AM--DETVFRGRTIKVLPKRTN  115 (124)
T ss_dssp             CEEEEEEEESSHHHHHHHH-TT--TTCEETTEECEEEESSCC
T ss_pred             cccEEEEEECCHHHHHHHH-hc--CCCeECCeEEEEEECCCC
Confidence            3678999999999999999 33  345789999999998753

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=96.39  E-value=0.0023  Score=42.04  Aligned_cols=41  Identities=22%  Similarity=0.259  Sum_probs=34.8

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      .|..|||||++.++|..++..+...  .+.|+++.+++++.+.
T Consensus        88 ~~G~afV~F~~~~~A~~Ai~~l~g~--~i~g~~l~V~~a~~~~  128 (135)
T 2lea_A           88 SRGFAFVRFHDKRDAEDAMDAMDGA--VLDGRELRVQMARYGR  128 (135)
T ss_dssp             CCSCCEEECSCHHHHHHHHTTTTTC--CSSSSCCEEEECCCCC
T ss_pred             cceEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEECCCCC
Confidence            3568999999999999999887755  5789999999998654

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=96.38  E-value=0.004  Score=40.68  Aligned_cols=41  Identities=12%  Similarity=0.256  Sum_probs=35.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      |.-|||||++.++|..++......  .+.||+|.+.|+.....
T Consensus        71 ~G~~FV~F~~~e~A~~Ai~~LnGr--~f~GR~i~v~~~~~~~f  111 (118)
T 3ue2_A           71 IVKIFVEFSIASETHKAIQALNGR--WFAGRKVVAEVYDQERF  111 (118)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEEECHHHH
T ss_pred             eEEEEEEECCHHHHHHHHHHHCCC--EECCcEEEEEEcChHhc
Confidence            467999999999999999998876  88999999999876543

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=95.34  E-value=0.00059  Score=43.20  Aligned_cols=41  Identities=17%  Similarity=0.327  Sum_probs=35.1

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+.+++.+.=
T Consensus        57 ~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~   97 (116)
T 2lcw_A           57 KGEATVSFDDPPSAKAAIDWFDGK--EFSGNPIKVSFATRRAD   97 (116)
Confidence            568999999999999999877654  67899999999987654

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=96.31  E-value=0.0061  Score=37.19  Aligned_cols=39  Identities=21%  Similarity=0.222  Sum_probs=30.0

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      .|.-|||||++.++|.++..    ....++|+++.+.++..+.
T Consensus        47 srGfaFV~F~~~~~A~~~~~----~~~~~~g~~v~v~~a~~k~   85 (89)
T 3d2w_A           47 FRAFAFVTFADDKVAQSLCG----EDLIIKGISVHISNAEPKH   85 (89)
T ss_dssp             CCSEEEEEESCHHHHHHHTT----CEEEETTEEEEEEECC---
T ss_pred             CCCEEEEEECCHHHHHHHcC----CCcccCCEEEEEEEcCCCC
Confidence            47899999999999996533    2567889999999987643

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.28  E-value=0.0013  Score=42.22  Aligned_cols=40  Identities=15%  Similarity=0.163  Sum_probs=34.6

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      |..|||||++.++|..++. .  +-..+.|+++.+.+++.++.
T Consensus        67 ~G~afV~F~~~~~a~~Al~-~--~g~~~~gr~i~V~~a~~~~~  106 (124)
T 1wel_A           67 TGEGFVEFRNEADYKAALC-R--HKQYMGNRFIQVHPITKKGM  106 (124)
T ss_dssp             EEEEEEEBSSSHHHHHHHT-S--CSBCSTTSCBEEEEECHHHH
T ss_pred             CeEEEEEECCHHHHHHHHH-h--CCCeECCcEEEEEECCHHHH
Confidence            5689999999999999999 4  34578999999999988765

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=96.28  E-value=0.0023  Score=39.37  Aligned_cols=38  Identities=11%  Similarity=0.212  Sum_probs=33.0

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      .|..|||||++.++|..++.    +...+.|+++.+.++..+
T Consensus        49 ~~g~afV~f~~~~~a~~Ai~----~~~~~~g~~l~v~~a~~~   86 (102)
T 2xs2_A           49 SKGYGFVSFYNDVDVQKIVE----SQINFHGKKLKLGPAIRK   86 (102)
T ss_dssp             EEEEEEEEESSCCCHHHHTT----CCCEETTEECEEEEEEEC
T ss_pred             ccceEEEEECCHHHHHHHHh----CCCeECCEEEEEEECCcC
Confidence            46789999999999999998    556899999999988754

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=96.26  E-value=0.0054  Score=41.16  Aligned_cols=42  Identities=17%  Similarity=0.154  Sum_probs=35.0

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK   49 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~   49 (94)
                      |..|||+|++.++|..++..+...  .+.|+++.|.++..+.-.
T Consensus       114 ~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~~  155 (165)
T 1rk8_A          114 KGYALVEYETHKQALAAKEALNGA--EIMGQTIQVDWCFVKGPK  155 (165)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEESEECC--
T ss_pred             eeEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEecCCCCC
Confidence            678999999999999999877654  789999999999865443

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=96.24  E-value=0.013  Score=36.55  Aligned_cols=40  Identities=10%  Similarity=0.124  Sum_probs=34.2

Q ss_pred             ceEEEEecCHHHHHHHHhhhhccCceEeC-----eEEEEEeccceee
Q psy9170           7 IQAFLEMADECAASTMVTYFTTCVAQLRG-----RAVYVQFSNHKEL   48 (94)
Q Consensus         7 nQAfvEm~d~e~A~~~v~~~~~~p~~irg-----~~vyiqyS~~~eL   48 (94)
                      ..|||||++.++|..++..+...  .+.|     +++.+++++.+.=
T Consensus        51 g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~~~~~~i~V~~a~~~~~   95 (108)
T 1x4c_A           51 GTGVVEFVRKEDMTYAVRKLDNT--KFRSHEGETAYIRVKVDGPRSP   95 (108)
T ss_dssp             TEEEEEESSHHHHHHHHHHSSSE--EEECTTSCEEEEEEEESSCCSC
T ss_pred             CEEEEEECCHHHHHHHHHHHCcC--CccCCcCcceEEEEEeCCCCCC
Confidence            68999999999999999976654  6888     9999999987543

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=96.16  E-value=0.007  Score=43.03  Aligned_cols=38  Identities=18%  Similarity=0.296  Sum_probs=33.3

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEe-CeEEEEEecc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLR-GRAVYVQFSN   44 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~ir-g~~vyiqyS~   44 (94)
                      +|..|||||++.++|..++......  .+. |+++.++|++
T Consensus       243 ~~g~afV~f~~~~~A~~A~~~l~g~--~~~~g~~l~v~~ak  281 (282)
T 3pgw_A          243 RHDIAFVEFDNEVQAGAARDALQGF--KITQNNAMKISFAK  281 (282)
T ss_pred             CCcEEEEEeCCHHHHHHHHHHcCCc--EeCCCCEEEEEEec
Confidence            3579999999999999999987764  677 9999999986

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.12  E-value=0.0056  Score=36.67  Aligned_cols=40  Identities=20%  Similarity=0.188  Sum_probs=32.2

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      .|.-|||||++.++|..+..    ....++|+++.+.++..++-
T Consensus        41 ~~g~afV~f~~~~~a~~~~~----~~~~~~g~~l~v~~a~~~~~   80 (88)
T 1wf0_A           41 FRAFAFVTFADDQIAQSLCG----EDLIIKGISVHISNAEPKHN   80 (88)
T ss_dssp             CCSCCEEECSCHHHHHHTTT----CEEEETTEEEEEECCCCCCC
T ss_pred             CCCEEEEEECCHHHHHHHhc----CCceeCCEEEEEEecCCCCC
Confidence            47899999999999986533    25678999999999886544

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=96.11  E-value=0.0085  Score=35.59  Aligned_cols=35  Identities=14%  Similarity=0.186  Sum_probs=29.1

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS   43 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS   43 (94)
                      |..|||+|++.++|..++..   ....+.|+++.++++
T Consensus        53 ~g~afV~f~~~~~a~~A~~~---~~~~~~g~~i~v~~A   87 (87)
T 3s7r_A           53 RGFGFILFKDAASVEKVLDQ---KEHRLDGRVIDPKKA   87 (87)
T ss_dssp             EEEEEEEESSTHHHHHHHHS---SCEEETTEEEEEEEC
T ss_pred             ccEEEEEECCHHHHHHHHHh---CCCEECCEEEEEEeC
Confidence            56799999999999999865   234699999998864

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=96.11  E-value=0.0058  Score=42.29  Aligned_cols=39  Identities=18%  Similarity=0.219  Sum_probs=34.0

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |..|||||++.++|..++......  .+.|+++.|.++..+
T Consensus       143 ~g~~fV~f~~~~~a~~Ai~~lng~--~~~g~~i~V~~a~~~  181 (213)
T 4f02_A          143 KGYGFVHFETQEAAERAIEKMNGM--LLNDRKVFVGRFKSR  181 (213)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCCH
T ss_pred             ceEEEEEeCCHHHHHHHHHHhCCC--EECCEEEEEEEcCCC
Confidence            568999999999999999887654  789999999998754

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=96.11  E-value=0.0023  Score=40.08  Aligned_cols=43  Identities=19%  Similarity=0.143  Sum_probs=35.5

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      .|.-|||||++.++|..++. ..  -..+.|+++.+.+++.++...
T Consensus        54 ~~G~afV~F~~~~~a~~Al~-~~--~~~~~gr~i~V~~a~~~~~~~   96 (107)
T 2lmi_A           54 RRGDALIEMESEQDVQKALE-KH--RMYMGQRYVEVYEINNEDVDA   96 (107)
T ss_dssp             TCSEEEEEBSSHHHHHHHHT-TT--TCCSSSSCCCCEECCHHHHHH
T ss_pred             EeeEEEEEECCHHHHHHHHH-hC--cceeCCeEEEEEECCHHHHHH
Confidence            36689999999999999999 43  346899999999998876543

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=96.08  E-value=0.0052  Score=41.01  Aligned_cols=39  Identities=21%  Similarity=0.164  Sum_probs=34.0

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      +..|||||++.++|..++......  .+.|+++.+.+++.+
T Consensus       156 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~  194 (198)
T 2yh0_A          156 KGYAFCEYVDINVTDQAIAGLNGM--QLGDKKLLVQRASVG  194 (198)
T ss_dssp             EEEEEEEESSSSHHHHHHHHHTTC--EETTEECEEEESCCC
T ss_pred             ceEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEECCCC
Confidence            668999999999999999977654  789999999998754

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.03  E-value=0.0078  Score=38.24  Aligned_cols=39  Identities=18%  Similarity=0.078  Sum_probs=32.1

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      +.|..|||||++.++|..++....    -+.|+++.+++.+.+
T Consensus        52 ~~rGfaFVeF~~~~~A~~Ai~~~~----~~~g~~l~V~~a~~~   90 (100)
T 2d9o_A           52 KKPGTAVVEFATVKAAELAVQNEV----GLVDNPLKISWLEGQ   90 (100)
T ss_dssp             SSSSEEEEEESCHHHHHHHHHTCC----BCSSSBCEEECSSCC
T ss_pred             CCCCEEEEEECCHHHHHHHHHhcC----CCCCCeEEEEEccCC
Confidence            457899999999999999998732    356999999997754

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=96.01  E-value=0.002  Score=42.73  Aligned_cols=42  Identities=19%  Similarity=0.184  Sum_probs=35.5

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK   49 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~   49 (94)
                      .|.-|||||++.++|..++...   .-.+.||+|.+..|+.+|+.
T Consensus        83 srGfaFV~F~~~e~A~~Al~~~---~~~l~gR~I~V~~a~~~e~~  124 (126)
T 2hgm_A           83 ITGEAFVQFASQELAEKALGKH---KERIGHRYIEVFKSSQEEVR  124 (126)
T ss_dssp             SCSEEEEEESSTTHHHHHHTTT---TCCBTTBCCCCEEECHHHHC
T ss_pred             CceEEEEEECCHHHHHHHHHHC---CCEECCEEEEEEECCHHHhh
Confidence            3678999999999999999852   26789999999999887764

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=95.98  E-value=0.0069  Score=41.66  Aligned_cols=42  Identities=14%  Similarity=0.113  Sum_probs=35.7

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      .|..|||+|++.++|..++..+...  .+.|+++.++++.....
T Consensus       128 ~kG~afV~F~~~~~A~~Ai~~lng~--~l~Gr~l~V~~a~~~~~  169 (177)
T 2f3j_A          128 SLGTADVHFERRADALKAMKQYKGV--PLDGRPMDIQLVASQID  169 (177)
T ss_dssp             CSCCEEEEESCHHHHHHHHHHSTTC--BCSSSBCEEEEESSGGG
T ss_pred             EeeEEEEEeCCHHHHHHHHHHhCCC--EECCEEEEEEEecCCCC
Confidence            4678999999999999999977655  78999999999986544

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=95.97  E-value=0.0046  Score=40.14  Aligned_cols=38  Identities=11%  Similarity=0.181  Sum_probs=30.9

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS   43 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS   43 (94)
                      +..|||||++.++|..++..+....+.-+++++.+.|+
T Consensus       131 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A  168 (168)
T 1b7f_A          131 RGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA  168 (168)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             ceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence            46899999999999999998887733324499999885

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=95.96  E-value=0.0045  Score=41.28  Aligned_cols=41  Identities=20%  Similarity=0.208  Sum_probs=34.7

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK   49 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~   49 (94)
                      |.-|||||++.++|..++. ...  ..+.||++.+..|+.++..
T Consensus        88 rG~aFV~F~~~e~a~~Al~-~~g--~~l~gr~i~V~~a~~~e~~  128 (136)
T 2hgl_A           88 SGEAFVELGSEDDVKMALK-KDR--ESMGHRYIEVFKSHRTEMD  128 (136)
T ss_dssp             EEEEEEECSSHHHHHHHHT-TTE--EESSSSEEEEEECCHHHHH
T ss_pred             CeEEEEEECCHHHHHHHHh-cCC--CEECCEEEEEEECChHHHH
Confidence            5689999999999999998 443  4789999999999877654

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=95.95  E-value=0.0027  Score=41.14  Aligned_cols=42  Identities=14%  Similarity=0.351  Sum_probs=35.5

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhcc--CceEeCeEEEEEecccee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTC--VAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~--p~~irg~~vyiqyS~~~e   47 (94)
                      .|.-|||||++. +|..++......  |..+.|+++.+.+++.++
T Consensus        66 ~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~  109 (131)
T 2m2b_A           66 NRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSK  109 (131)
T ss_dssp             BCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSC
T ss_pred             cceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCC
Confidence            467899999999 999999888764  558999999999998653

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=95.92  E-value=0.0031  Score=37.36  Aligned_cols=34  Identities=24%  Similarity=0.173  Sum_probs=27.0

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCe-EEEE
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGR-AVYV   40 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~-~vyi   40 (94)
                      .|..|||||++.++|..++......  .+.|+ ++.+
T Consensus        46 ~~g~afV~f~~~~~A~~Ai~~lng~--~~~g~~~l~V   80 (81)
T 2krb_A           46 TKGYIFLEYASPAHAVDAVKNADGY--KLDKQHTFRV   80 (81)
T ss_dssp             CCCEEEEEESSHHHHHHHHTTSSSC--CCSSSSCCCC
T ss_pred             EeEEEEEEECCHHHHHHHHHHhcCc--ccCCceeEEe
Confidence            4789999999999999999876654  56777 6543

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=95.86  E-value=0.0063  Score=42.34  Aligned_cols=44  Identities=11%  Similarity=0.194  Sum_probs=38.4

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK   49 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~   49 (94)
                      +.+..+||||++.++|..++......  .+.||+|.+.|+......
T Consensus       173 ~~~G~~fv~f~~~~~a~~a~~~l~gr--~~~gr~i~~~~~~~~~f~  216 (222)
T 3dxb_A          173 EIIVKIFVEFSIASETHKAIQALNGR--WFAGRKVVAEVYDQERFD  216 (222)
T ss_dssp             CEEEEEEEEESSHHHHHHHHHHHTTC--BSSSSBCEEEECCHHHHH
T ss_pred             CceeEEEEEECCHHHHHHHHHHhcCc--eECCeEEEEEEcCHHHhh
Confidence            55788999999999999999998877  789999999999865543

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=95.82  E-value=0.011  Score=39.26  Aligned_cols=39  Identities=18%  Similarity=0.164  Sum_probs=31.7

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      |..|||||++.++|..++..   +...+.|+++.+.++..++
T Consensus       146 ~g~afV~F~~~~~A~~A~~~---~~~~~~G~~i~v~~a~~k~  184 (196)
T 1l3k_A          146 RGFAFVTFDDHDSVDKIVIQ---KYHTVNGHNCEVRKALSKQ  184 (196)
T ss_dssp             EEEEEEEESSHHHHHHHHHC---SCCEETTEECEEEECC---
T ss_pred             cceEEEEECCHHHHHHHHHh---CCcEECCEEEEEEecCChh
Confidence            56799999999999999975   3558999999999998654

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.78  E-value=0.007  Score=38.15  Aligned_cols=38  Identities=11%  Similarity=0.093  Sum_probs=31.9

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      .|.-|||||++.++|..++. .  +...+.|+++.++++..
T Consensus        51 ~rG~aFV~F~~~e~a~~Ai~-~--~~~~~~gr~l~V~~~~~   88 (103)
T 1s79_A           51 FKGSIFVVFDSIESAKKFVE-T--PGQKYKETDLLILFKDD   88 (103)
T ss_dssp             CCCEEEEEESSHHHHHHHHT-S--SCCCCTTTTCEEEEHHH
T ss_pred             CccEEEEEECCHHHHHHHHH-c--CCCEECCEEEEEEEchH
Confidence            46789999999999999998 3  45578999999997653

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.63  E-value=0.019  Score=36.72  Aligned_cols=41  Identities=7%  Similarity=0.016  Sum_probs=33.5

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      .|.-|||||++.++|..++..   +--.+.||+|.+..++.++.
T Consensus        55 ~~G~afV~F~~~~~a~~Al~~---~~~~~~gr~i~V~~a~~~~~   95 (109)
T 2dnn_A           55 NNGNGLVKFLSPQDTFEALKR---NRMLMIQRYVEVSPATERQW   95 (109)
T ss_dssp             CCSEEEEECSSHHHHHHHHHT---TTEEETTEEEEEEECCHHHH
T ss_pred             CCeEEEEEECCHHHHHHHHhc---CCCeECCeEEEEEECCccch
Confidence            367899999999999999842   34589999999988876554

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.63  E-value=0.003  Score=37.51  Aligned_cols=36  Identities=14%  Similarity=0.139  Sum_probs=28.2

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS   43 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS   43 (94)
                      |.-|||||++.++|..++......  .+.|+.+.++++
T Consensus        47 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~~~~~~~   82 (85)
T 1x4e_A           47 KGYGFVDFDSPSAAQKAVTALKAS--GVQAQMAKQSGP   82 (85)
T ss_dssp             CSEEEEEESCHHHHHHHHHHHHHH--TCCEESCCSSCC
T ss_pred             CcEEEEEECCHHHHHHHHHHhcCC--eEeeEEEeecCC
Confidence            668999999999999999977655  466776655544

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.33  E-value=0.0092  Score=37.32  Aligned_cols=39  Identities=18%  Similarity=0.077  Sum_probs=32.3

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      |.-|||||++.++|..++..   +...+.||++.+..|+..+
T Consensus        55 ~G~afV~F~~~~~a~~Al~~---~~~~~~gr~i~V~~~~~~~   93 (102)
T 1wez_A           55 TGEADVEFATHEDAVAAMAK---DKANMQHRYVELFLNSTAG   93 (102)
T ss_dssp             EEEEEEECSSSHHHHHHHTT---SSCCSSSSCCEEEEECCCC
T ss_pred             eeEEEEEECCHHHHHHHHHh---CCCeECCcEEEEEECCCCC
Confidence            45799999999999999963   4467899999998887655

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=95.30  E-value=0.0078  Score=42.97  Aligned_cols=43  Identities=16%  Similarity=0.230  Sum_probs=35.9

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK   49 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~   49 (94)
                      .|.-|||||++.++|..++..+...  .|.|++|.|.+++.+.+.
T Consensus       111 skGfaFV~f~~~~~a~~Ai~~lng~--~~~Gr~l~V~~a~~~~~~  153 (229)
T 3q2s_C          111 SKGFALVGVGSEASSKKLMDLLPKR--ELHGQNPVVTPVNKQFLS  153 (229)
T ss_dssp             EEEEEEEEESCTTHHHHHHTTSTTS--CBTTBCCEEEECCHHHHH
T ss_pred             cceEEEEEECCHHHHHHHHHHcCCC--eECCEEeEEEECCCCccc
Confidence            3567999999999999999976654  689999999999876543

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.29  E-value=0.016  Score=36.16  Aligned_cols=39  Identities=13%  Similarity=0.172  Sum_probs=30.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCce------EeCeEEEEEecc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQ------LRGRAVYVQFSN   44 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~------irg~~vyiqyS~   44 (94)
                      |..|||+|++.++|..++..+....+.      -.|+++.+.|++
T Consensus        66 ~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~  110 (114)
T 1x5o_A           66 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG  110 (114)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence            568999999999999999977654321      157888888876

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=95.25  E-value=0.012  Score=37.79  Aligned_cols=36  Identities=14%  Similarity=0.240  Sum_probs=29.6

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCe--EEEEEec
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGR--AVYVQFS   43 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~--~vyiqyS   43 (94)
                      |..|||||++.++|..++......  .+.|+  ++.+.|+
T Consensus       130 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~~~i~v~~A  167 (167)
T 1fxl_A          130 RGVGFIRFDKRIEAEEAIKGLNGQ--KPSGATEPITVKFA  167 (167)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTC--CCTTCSSCCEEEEC
T ss_pred             cceEEEEeCCHHHHHHHHHHhcCC--ccCCCccceEEEeC
Confidence            567999999999999999988766  55665  5888774

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=95.04  E-value=0.031  Score=43.59  Aligned_cols=42  Identities=19%  Similarity=0.217  Sum_probs=36.0

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      .|..|||+|++.++|..++..+...  .|.|++|.|.++..+..
T Consensus       143 ~kG~aFV~F~~~e~A~~Ai~~lng~--~i~gr~i~V~~a~~~~~  184 (437)
T 3pgw_S          143 PRGYAFIEYEHERDMHSAYKHADGK--KIDGRRVLVDVERGRTV  184 (437)
T ss_pred             ccceEEEeeccHHHHHHHHHHcCCC--EECCEEEEEEEeCCCCC
Confidence            3678999999999999999886654  78999999999986544

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=94.97  E-value=0.023  Score=41.55  Aligned_cols=43  Identities=14%  Similarity=0.204  Sum_probs=35.8

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceE----------eCeEEEEEeccce
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQL----------RGRAVYVQFSNHK   46 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~i----------rg~~vyiqyS~~~   46 (94)
                      +.|+.|||+|++.++|..++.......+.+          .|+++.|.+++..
T Consensus       177 ~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~  229 (240)
T 3u1l_A          177 ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED  229 (240)
T ss_dssp             GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence            468899999999999999999988775544          8999999999753

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=94.94  E-value=0.019  Score=37.30  Aligned_cols=39  Identities=15%  Similarity=0.203  Sum_probs=30.2

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceE-eCeEEEEEecc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQL-RGRAVYVQFSN   44 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~i-rg~~vyiqyS~   44 (94)
                      |..|||||++.++|..++.........- .|+++.+.|+.
T Consensus       136 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad  175 (175)
T 3nmr_A          136 RGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD  175 (175)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred             EEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence            5579999999999999998887653221 15899998863

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.85  E-value=0.036  Score=34.83  Aligned_cols=37  Identities=16%  Similarity=0.144  Sum_probs=30.0

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN   44 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~   44 (94)
                      +.|..|||||++.++|..++....    .+.|+.+.+..+.
T Consensus        50 ~~~G~aFV~f~~~~~a~~Ai~~~~----~~~G~~~~~~~~~   86 (114)
T 2dnl_A           50 PPKGYAFLLFQEESSVQALIDACL----EEDGKLYLCVSSP   86 (114)
T ss_dssp             CTTSEEEECCSSHHHHHHHHHHSE----EETTEEEEEECCS
T ss_pred             CcccEEEEEECCHHHHHHHHHhhh----hcCCcEEEeccCC
Confidence            347789999999999999998763    4788888887544

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=94.78  E-value=0.055  Score=41.50  Aligned_cols=47  Identities=11%  Similarity=0.115  Sum_probs=35.9

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCce-EeCe--EEEEEeccceeee
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQ-LRGR--AVYVQFSNHKELK   49 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~-irg~--~vyiqyS~~~eL~   49 (94)
                      +++|.-|||||++.++|.++++........ ..|+  ++|+.|...-.++
T Consensus        53 ~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~~~~~  102 (345)
T 3tht_A           53 PPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWK  102 (345)
T ss_dssp             CTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSSEEEE
T ss_pred             eCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEeeccccc
Confidence            457899999999999999999998866441 2245  8999998643333

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=94.60  E-value=0.041  Score=38.16  Aligned_cols=37  Identities=11%  Similarity=0.108  Sum_probs=30.9

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN   44 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~   44 (94)
                      .|+-|||||++.++|..++....   ..+.|+++.+...+
T Consensus       149 ~kG~aFVeF~~~e~A~~A~~~~~---~~~~Gr~l~V~~~~  185 (193)
T 2voo_A          149 FKGSIFVVFDSIESAKKFVETPG---QKYKETDLLILFKD  185 (193)
T ss_dssp             EEEEEEEEESSHHHHHHHHHCTT---CEETTEECEEEETT
T ss_pred             cccEEEEEECCHHHHHHHHHhCC---CeECCEEEEEEEhH
Confidence            36789999999999999987542   38999999998765

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.13  E-value=0.017  Score=37.81  Aligned_cols=42  Identities=21%  Similarity=0.082  Sum_probs=35.3

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      |.-|||||++.++|..++..   +--.+.||.|-+..++.+|...
T Consensus        68 ~G~aFV~F~~~~~A~~Al~~---~~~~l~gR~i~V~~a~~~e~~~  109 (123)
T 2dha_A           68 TGDAFVLFACEEYAQNALRK---HKDLLGKRYIELFRSTAAEVQQ  109 (123)
T ss_dssp             EEEEEECCSSHHHHHHHHTT---TTEESSSCEECCEEECHHHHHH
T ss_pred             eeEEEEEECCHHHHHHHHHh---CCCeeCCeEEEEEECCHHHHHH
Confidence            56799999999999999985   3357899999999988877654

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.08  E-value=0.092  Score=33.46  Aligned_cols=36  Identities=8%  Similarity=0.238  Sum_probs=29.9

Q ss_pred             ceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           7 IQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         7 nQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      .++||+|+|.++|.++++ ..  -..+.||++-++..+.
T Consensus        50 d~~fVtF~d~~sAlaAi~-mn--G~~v~Gr~LkV~lkt~   85 (91)
T 2dnr_A           50 DKMWVTFLEGSSALNVLS-LN--GKELLNRTITIALKSP   85 (91)
T ss_dssp             SSEEEEESSHHHHHHGGG-GT--TCEETTEEEEEEECCC
T ss_pred             CCEEEEECChHHHHHHHh-cC--CeEeCCeEEEEEeCCC
Confidence            349999999999999998 44  4489999999997653

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=93.60  E-value=0.061  Score=33.95  Aligned_cols=37  Identities=11%  Similarity=0.159  Sum_probs=29.0

Q ss_pred             ceEEEEecCHHHHHHHHhhhhccCceEeCeE-----EEEEeccc
Q psy9170           7 IQAFLEMADECAASTMVTYFTTCVAQLRGRA-----VYVQFSNH   45 (94)
Q Consensus         7 nQAfvEm~d~e~A~~~v~~~~~~p~~irg~~-----vyiqyS~~   45 (94)
                      .-|||||++.++|..++..+...  .+.|++     +.+..+..
T Consensus        52 g~afV~f~~~~~a~~Ai~~l~g~--~~~gr~~~~~~i~v~~~~~   93 (115)
T 3beg_B           52 GTGVVEFVRKEDMTYAVRKLDNT--KFRSHEGETAYIRVKVDGP   93 (115)
T ss_dssp             SEEEEEESSHHHHHHHHHHHTTC--BCCCTTSCCCBCEEEECC-
T ss_pred             CEEEEEECCHHHHHHHHHHhCCC--EECCcEeeeEEEEeccCCC
Confidence            68999999999999999987755  678887     55555544

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=93.59  E-value=0.021  Score=38.16  Aligned_cols=41  Identities=15%  Similarity=0.073  Sum_probs=32.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK   49 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~   49 (94)
                      |.-|||||++.++|..++..   +-..+.||++.+..++.++-.
T Consensus        86 rGfaFV~F~~~e~A~~Al~~---~g~~l~gR~i~V~~a~~~~~~  126 (139)
T 2hgn_A           86 TGEADVEFATHEEAVAAMSK---DRANMQHRYIELFLNSTTGAS  126 (139)
T ss_dssp             SCCCEEECSHHHHHHHHTTC---CSCSSSSCCCCCEECCCSCC-
T ss_pred             ceEEEEEeCCHHHHHHHHhh---CCCEECCEEEEEEECCCCCCC
Confidence            56799999999999999832   445789999999888876543

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=93.24  E-value=0.17  Score=32.19  Aligned_cols=37  Identities=11%  Similarity=0.035  Sum_probs=30.7

Q ss_pred             CCCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          53 THSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        53 s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      ...|+++|.  |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        17 ~~~ps~~l~--V~NLp~~~te~~L~~lF~~fG~V~~v~i   53 (100)
T 3r27_A           17 KTPASPVVH--IRGLIDGVVEADLVEALQEFGPISYVVV   53 (100)
T ss_dssp             CCCCCSEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred             cCCCCcEEE--EeCCCCCCCHHHHHHHHhccCCEEEEEE
Confidence            346788876  5788899999999999999998876644

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=92.38  E-value=0.14  Score=36.30  Aligned_cols=42  Identities=17%  Similarity=0.108  Sum_probs=33.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCc--eEeCeEEEEEecccee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVA--QLRGRAVYVQFSNHKE   47 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~--~irg~~vyiqyS~~~e   47 (94)
                      +..|||||++.++|..++..+.....  ...|+++.+.++...+
T Consensus       137 ~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~  180 (261)
T 3sde_A          137 TGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD  180 (261)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred             CcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence            66899999999999999999854432  2348999999988654

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.32  E-value=0.24  Score=31.83  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=28.1

Q ss_pred             ceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEe
Q psy9170           7 IQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQF   42 (94)
Q Consensus         7 nQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqy   42 (94)
                      .++||+|+|.++|.++++ ..  ...+.||++-+++
T Consensus        59 d~~fVtF~d~~sAl~AI~-ld--G~~v~Gr~L~V~~   91 (95)
T 1ufw_A           59 GQMLVTFADSHSALSVLD-VD--GMKVKGRAVKISG   91 (95)
T ss_dssp             TEEEEECSCSHHHHHHHH-GG--GSEETTEEEEEEC
T ss_pred             CcEEEEEcChHHHHHHHh-cC--CeeeCCeEEEEec
Confidence            459999999999999998 44  4589999998875

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=92.16  E-value=0.3  Score=32.37  Aligned_cols=80  Identities=9%  Similarity=0.042  Sum_probs=28.3

Q ss_pred             EEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee------ee---------ccCCCCCCcEEEEEEcccCCceeHhH
Q psy9170          11 LEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE------LK---------TDQTHSNALLLHLTIGIILRPATHYQ   75 (94)
Q Consensus        11 vEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e------L~---------~~~s~~~n~ILL~TI~n~~ypItvdv   75 (94)
                      .||++.++|...+.-.......-+|+..-...+....      +.         .+....+++.|.  |.|.-+.+|-+-
T Consensus        11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~--V~nLp~~~t~~~   88 (165)
T 1rk8_A           11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILF--VTSIHEEAQEDE   88 (165)
T ss_dssp             -------------------------------------------------------CCCCC-CEEEE--EESCCTTCCHHH
T ss_pred             hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEE--EeCCCCCCCHHH
Confidence            5788888887777666655444445544433332211      10         011123355554  579989999999


Q ss_pred             HHhhhccccceEEEEEE
Q psy9170          76 VHLIRSACQVYLIVCVL   92 (94)
Q Consensus        76 lh~i~s~~g~~~~v~~~   92 (94)
                      |..+|+.||.+.-|-+.
T Consensus        89 L~~~F~~~G~i~~v~i~  105 (165)
T 1rk8_A           89 IQEKFCDYGEIKNIHLN  105 (165)
T ss_dssp             HHHHHGGGSCEEEEEEE
T ss_pred             HHHHhhcCCCEEEEEEE
Confidence            99999999987666543

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=91.18  E-value=0.58  Score=29.25  Aligned_cols=36  Identities=8%  Similarity=-0.023  Sum_probs=29.3

Q ss_pred             CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      ..|++.|.+  .|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        12 ~~p~~~l~V--~nLp~~~te~~L~~~F~~fG~V~~v~i   47 (104)
T 1wex_A           12 VSVSPVVHV--RGLCESVVEADLVEALEKFGTICYVMM   47 (104)
T ss_dssp             CCCCSEEEE--ESCCSSCCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCCCEEEE--eCCCCCCCHHHHHHHHHhCCCEEEEEE
Confidence            457788775  598899999999999999997766543

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.27  E-value=0.3  Score=32.26  Aligned_cols=43  Identities=12%  Similarity=-0.007  Sum_probs=35.1

Q ss_pred             CCCCceEEEEecC-HHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           3 DYDEIQAFLEMAD-ECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         3 ~~~KnQAfvEm~d-~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      .++..-|||+|.| .++|..++.-..+....|+|..+-+.....
T Consensus        52 ~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G   95 (121)
T 1owx_A           52 VRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG   95 (121)
T ss_dssp             CTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred             ecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence            4555679999999 899999999888888899998877776654

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=89.79  E-value=0.23  Score=32.25  Aligned_cols=36  Identities=11%  Similarity=0.051  Sum_probs=29.2

Q ss_pred             CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEE
Q psy9170          54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIV   89 (94)
Q Consensus        54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v   89 (94)
                      ..|++.|.|.-.|.-+.+|-|-|..+|++||.+.-|
T Consensus        22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v   57 (114)
T 2cq2_A           22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDAL   57 (114)
T ss_dssp             SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEE
T ss_pred             CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEE
Confidence            456777776646799999999999999999976554

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=89.52  E-value=0.42  Score=33.07  Aligned_cols=24  Identities=13%  Similarity=0.224  Sum_probs=21.2

Q ss_pred             CceEEEEecCHHHHHHHHhhhhcc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTC   29 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~   29 (94)
                      |..|||||++.++|..++......
T Consensus       165 ~g~gfV~f~~~~~A~~Ai~~lng~  188 (205)
T 3tyt_A          165 SSSGLLEWDSKSDALETLGFLNHY  188 (205)
T ss_dssp             SEEEEEECSSHHHHHHHHHHHTTC
T ss_pred             ceEEEEEeCCHHHHHHHHHHhCCC
Confidence            578999999999999999987755

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=89.14  E-value=0.9  Score=28.26  Aligned_cols=36  Identities=11%  Similarity=0.053  Sum_probs=29.1

Q ss_pred             CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      ..|++.|.+  .|.-+.+|-|-|..+|++||.+.-|.+
T Consensus        12 ~~p~~~l~V--~nLp~~~te~~L~~~F~~fG~v~~v~i   47 (101)
T 2cq1_A           12 GAPSRVLHI--RKLPGEVTETEVIALGLPFGKVTNILM   47 (101)
T ss_dssp             SSCCSEEEE--ESCCTTCCHHHHHHTTTTTSCEEEEEE
T ss_pred             CCCCCEEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence            456777765  598899999999999999998766543

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=87.47  E-value=0.93  Score=29.41  Aligned_cols=36  Identities=8%  Similarity=-0.032  Sum_probs=29.3

Q ss_pred             CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      ..|++.|.|  .|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        28 ~~ps~~LfV--gNLp~~vte~dL~~lF~~fG~V~~v~i   63 (119)
T 2ad9_A           28 GVPSRVIHI--RKLPIDVTEGEVISLGLPFGKVTNLLM   63 (119)
T ss_dssp             SSCCSEEEE--ESCCTTCCHHHHHHHHTTTSCCCEEEE
T ss_pred             CCCCCEEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence            456788765  699999999999999999997765543

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=87.12  E-value=0.85  Score=29.07  Aligned_cols=36  Identities=11%  Similarity=-0.021  Sum_probs=29.1

Q ss_pred             CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      +.+++.|.  |.|.-+.+|-|-|..+|++||.+.-|.+
T Consensus        13 ~~~~~~Lf--V~nLp~~vte~dL~~lF~~fG~V~~v~i   48 (105)
T 1sjq_A           13 GVPSRVIH--IRKLPIDVTEGEVISLGLPFGKVTNLLM   48 (105)
T ss_dssp             CCCCCEEE--ECSCCTTSCHHHHHHHHHHHCCEEEEEE
T ss_pred             CCCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence            44566655  5899999999999999999998776654

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=85.36  E-value=0.9  Score=27.77  Aligned_cols=29  Identities=7%  Similarity=-0.023  Sum_probs=25.1

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      =|.|.-+.+|-|-|..+|++||.+.-|-+
T Consensus        23 fV~nLp~~~te~~L~~~F~~~G~I~~v~i   51 (99)
T 4fxv_A           23 IVNYLPQNMTQDELRSLFSSIGEVESAKL   51 (99)
T ss_dssp             EEESCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCEEEeEe
Confidence            47899999999999999999998766544

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=85.32  E-value=1.4  Score=25.60  Aligned_cols=29  Identities=3%  Similarity=-0.063  Sum_probs=24.5

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      -|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        15 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i   43 (87)
T 3s7r_A           15 FVGGLSWDTSKKDLKDYFTKFGEVVDCTI   43 (87)
T ss_dssp             EEECCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHhCCCEEEEEE
Confidence            35788899999999999999998766544

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=84.97  E-value=1.4  Score=26.51  Aligned_cols=34  Identities=15%  Similarity=0.105  Sum_probs=26.9

Q ss_pred             CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      +++-|.  |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        14 ~~~~l~--v~nLp~~~t~~~l~~~F~~~G~i~~v~i   47 (105)
T 2dnh_A           14 RDRKLF--VGMLNKQQSEEDVLRLFQPFGVIDECTV   47 (105)
T ss_dssp             CCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence            344443  6799999999999999999998766554

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=84.60  E-value=1.5  Score=25.81  Aligned_cols=35  Identities=6%  Similarity=-0.061  Sum_probs=27.2

Q ss_pred             CCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          55 SNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        55 ~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      .+++-|.  |.|.-+.+|-+-|..+|++||.+.-|.+
T Consensus        14 ~~~~~l~--v~nlp~~~~~~~l~~~F~~~G~i~~v~i   48 (95)
T 2ywk_A           14 EADRTVF--VGNLEARVREEILYELFLQAGPLTKVTI   48 (95)
T ss_dssp             TGGGEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred             CCCCEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence            3445444  5798899999999999999998766544

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.07  E-value=0.79  Score=29.33  Aligned_cols=34  Identities=15%  Similarity=0.135  Sum_probs=26.8

Q ss_pred             CCCcEEEEEEcccCCceeHhH----HHhhhcccc-ceEEE
Q psy9170          55 SNALLLHLTIGIILRPATHYQ----VHLIRSACQ-VYLIV   89 (94)
Q Consensus        55 ~~n~ILL~TI~n~~ypItvdv----lh~i~s~~g-~~~~v   89 (94)
                      .|++-| +-|.|.-+.++.|.    ||++|++|| .++=|
T Consensus         6 ~p~~T~-lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V   44 (96)
T 2diu_A            6 SGCHTL-LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI   44 (96)
T ss_dssp             CCSSEE-EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC
T ss_pred             CCcceE-EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE
Confidence            345555 46899999999998    889999995 76643

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=83.87  E-value=1.5  Score=25.31  Aligned_cols=28  Identities=7%  Similarity=-0.091  Sum_probs=24.3

Q ss_pred             EcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          64 IGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        64 I~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      |.|.-+.+|-|-|..+|++||.+.-|.+
T Consensus        10 v~nlp~~~t~~~l~~~f~~~G~i~~~~i   37 (85)
T 1x4e_A           10 IRGLQPGTTDQDLVKLCQPYGKIVSTKA   37 (85)
T ss_dssp             EESCCTTCCHHHHHTTSTTTSCEEEEEE
T ss_pred             EeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence            5788889999999999999998776654

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=83.85  E-value=1.4  Score=26.25  Aligned_cols=27  Identities=4%  Similarity=-0.170  Sum_probs=23.6

Q ss_pred             EcccCCceeHhHHHhhhccccceEEEE
Q psy9170          64 IGIILRPATHYQVHLIRSACQVYLIVC   90 (94)
Q Consensus        64 I~n~~ypItvdvlh~i~s~~g~~~~v~   90 (94)
                      |.|.-+.+|-+-|..+|++||.+.-|-
T Consensus        22 V~nlp~~~t~~~l~~~F~~~G~v~~v~   48 (97)
T 1why_A           22 VGGLGPNTSLAALAREFDRFGSIRTID   48 (97)
T ss_dssp             EECCCSSCCHHHHHHHHHTTSCEEEEE
T ss_pred             EeCCCCCCCHHHHHHHHHhcCCeeEEE
Confidence            579999999999999999999876654

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=83.80  E-value=1.6  Score=27.28  Aligned_cols=29  Identities=7%  Similarity=-0.140  Sum_probs=24.7

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      -|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        10 fV~nL~~~~te~~L~~~F~~~G~i~~v~i   38 (110)
T 3s8s_A           10 TFARLNDNVRETFLKDMCRKYGEVEEVEI   38 (110)
T ss_dssp             EEESCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred             EEECCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence            46788899999999999999998766544

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=83.73  E-value=0.76  Score=28.86  Aligned_cols=35  Identities=17%  Similarity=0.120  Sum_probs=29.1

Q ss_pred             CCCcEEEEEEcccCC-ceeHhHHHhhhccccceEEEEE
Q psy9170          55 SNALLLHLTIGIILR-PATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        55 ~~n~ILL~TI~n~~y-pItvdvlh~i~s~~g~~~~v~~   91 (94)
                      .|++.|.  |.|.-+ .+|-|-|..+|++||.+.-|.+
T Consensus        13 ~p~~~l~--V~nLp~~~~te~dL~~lF~~fG~V~~v~i   48 (102)
T 1x4d_A           13 ETRRVVH--IMDFQRGKNLRYQLLQLVEPFGVISNHLI   48 (102)
T ss_dssp             CCCCEEE--EESCCCSSSHHHHHHTTTGGGSCEEEEEE
T ss_pred             CCCCEEE--EeCCCCCcCCHHHHHHHHHhcCCEEEEEE
Confidence            4677765  579999 9999999999999998776654

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.48  E-value=1.6  Score=25.09  Aligned_cols=28  Identities=11%  Similarity=-0.054  Sum_probs=23.9

Q ss_pred             EcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          64 IGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        64 I~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        17 V~~l~~~~t~~~l~~~f~~~G~i~~~~~   44 (85)
T 2ytc_A           17 VGGLGDTITETDLRNHFYQFGEIRTITV   44 (85)
T ss_dssp             EECCTTTSCHHHHHHHHHTTSCEEEEEE
T ss_pred             EcCCCCCCCHHHHHHHHHhCCCEeEEEE
Confidence            5788899999999999999998765543

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.43  E-value=1.7  Score=26.07  Aligned_cols=30  Identities=7%  Similarity=-0.116  Sum_probs=24.9

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIVCVL   92 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~~   92 (94)
                      -|.|.-+.+|-+-|..+|++||.+.-|.+.
T Consensus        19 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~   48 (103)
T 2d9p_A           19 YVKNLDDGIDDERLRKAFSPFGTITSAKVM   48 (103)
T ss_dssp             EEECCCTTCCHHHHHHTTTTTSCEEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence            467998999999999999999987665443

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=83.12  E-value=1.7  Score=25.38  Aligned_cols=36  Identities=11%  Similarity=-0.107  Sum_probs=28.1

Q ss_pred             CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      +.+++.|.  |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        12 ~~~~~~l~--v~nlp~~~t~~~l~~~f~~~G~v~~v~i   47 (95)
T 2cqc_A           12 PDPNCCLG--VFGLSLYTTERDLREVFSKYGPIADVSI   47 (95)
T ss_dssp             CCGGGCEE--EESCCSSCCHHHHHHHHHTTSCEEEEEE
T ss_pred             CCCCCEEE--EECCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence            34566555  4698899999999999999997765544

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=83.01  E-value=1.8  Score=25.24  Aligned_cols=29  Identities=10%  Similarity=-0.058  Sum_probs=24.5

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      -|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        12 ~V~nlp~~~t~~~l~~~f~~~G~v~~~~i   40 (92)
T 2dgv_A           12 FVRNLPFDFTWKMLKDKFNECGHVLYADI   40 (92)
T ss_dssp             EECSCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence            46899999999999999999997765543

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=82.99  E-value=1.4  Score=27.41  Aligned_cols=29  Identities=17%  Similarity=-0.085  Sum_probs=24.4

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      =|.|.-+.+|-|-|..+|++||.+.-|-+
T Consensus         9 fV~nLp~~~te~~L~~~F~~~G~v~~v~i   37 (115)
T 4f25_A            9 FIKNLDKSIDNKALYDTFSAFGNILSCKV   37 (115)
T ss_dssp             EEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred             EECCCCCCCCHHHHHHHHhccCCEEEEEE
Confidence            47899999999999999999998765433

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.77  E-value=1.9  Score=25.63  Aligned_cols=28  Identities=14%  Similarity=-0.045  Sum_probs=24.1

Q ss_pred             EcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          64 IGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        64 I~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      |.|.-+.+|-+-|..+|++||.+.-|.+
T Consensus        22 v~nlp~~~t~~~l~~~F~~~G~i~~v~i   49 (100)
T 2do4_A           22 ISGLPFSCTKEELEEICKAHGTVKDLRL   49 (100)
T ss_dssp             EESCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred             EeCCCCCCCHHHHHHHHHhCCCeEEEEE
Confidence            5799999999999999999997765544

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=82.59  E-value=2  Score=25.75  Aligned_cols=29  Identities=17%  Similarity=-0.007  Sum_probs=24.6

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      -|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        19 ~v~nlp~~~t~~~l~~~F~~~G~i~~v~i   47 (103)
T 2cqg_A           19 IVLGLPWKTTEQDLKEYFSTFGEVLMVQV   47 (103)
T ss_dssp             EEESCCSSCCHHHHHHHHGGGSCEEEEEE
T ss_pred             EEEcCCCcCCHHHHHHHHHhcCCeEEEEE
Confidence            35798899999999999999998766544

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=82.42  E-value=1.9  Score=25.55  Aligned_cols=29  Identities=10%  Similarity=-0.083  Sum_probs=24.4

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      -|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus         9 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i   37 (98)
T 2cpf_A            9 FIKNLNFSTTEETLKGVFSKVGAIKSCTI   37 (98)
T ss_dssp             EEESCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence            35788899999999999999997765544

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=82.28  E-value=2  Score=25.79  Aligned_cols=34  Identities=12%  Similarity=0.051  Sum_probs=27.1

Q ss_pred             CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      +++.|.  |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        22 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~i~~v~i   55 (106)
T 1p27_B           22 EGWILF--VTGVHEEATEEDIHDKFAEYGEIKNIHL   55 (106)
T ss_dssp             TBEEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHhccCCeEEEEE
Confidence            344444  5799999999999999999998766654

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=82.20  E-value=1.5  Score=29.77  Aligned_cols=43  Identities=19%  Similarity=0.093  Sum_probs=30.5

Q ss_pred             CceEEEEecC-----HHH---HHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMAD-----ECA---ASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d-----~e~---A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      |.=|||||.|     .++   |..++.-+.-+-..|.|+++.+++-..-.+
T Consensus        48 lGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g~~   98 (136)
T 2j8a_A           48 LHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHSIL   98 (136)
T ss_dssp             EEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTTHH
T ss_pred             eeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECcccHH
Confidence            5679999997     344   555555445577899999999997665433

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.06  E-value=2.1  Score=25.07  Aligned_cols=28  Identities=21%  Similarity=0.191  Sum_probs=24.0

Q ss_pred             EcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          64 IGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        64 I~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        13 V~nlp~~~t~~~l~~~F~~~G~i~~v~~   40 (90)
T 2dnq_A           13 IGNLPREATEQEIRSLFEQYGKVLECDI   40 (90)
T ss_dssp             EESCCSSCCHHHHHHHHHTSSCEEEEEE
T ss_pred             EeCCCCCCCHHHHHHHHHhCCCEEEEEE
Confidence            5798899999999999999998766543

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=81.84  E-value=3  Score=25.92  Aligned_cols=37  Identities=3%  Similarity=-0.078  Sum_probs=26.3

Q ss_pred             CCCCcEEEEEEcccCCc-----eeHhHHHhhhccccceEEEEEE
Q psy9170          54 HSNALLLHLTIGIILRP-----ATHYQVHLIRSACQVYLIVCVL   92 (94)
Q Consensus        54 ~~~n~ILL~TI~n~~yp-----Itvdvlh~i~s~~g~~~~v~~~   92 (94)
                      +.|+++|++.  |+..|     =+-|-|...|++||.+.-|-+.
T Consensus         5 ~~~s~~l~l~--Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~   46 (105)
T 2pe8_A            5 KCPTKVVLLR--NMVGAGEVDEDLEVETKEECEKYGKVGKCVIF   46 (105)
T ss_dssp             GSCCSEEEEE--SSSCSCCC---CHHHHHHHGGGGSCEEEEEEE
T ss_pred             CCCCCEEEEE--cCCChHHhhHHHHHHHHHHHHhcCCEEEEEEe
Confidence            4567777654  77654     2568899999999987766543

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=81.74  E-value=1.9  Score=25.84  Aligned_cols=35  Identities=0%  Similarity=-0.007  Sum_probs=27.5

Q ss_pred             CCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          55 SNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        55 ~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      .+++-|.  |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        13 ~~~~~l~--V~nlp~~~t~~~l~~~f~~~G~i~~v~i   47 (103)
T 2cq0_A           13 DDNATIR--VTNLSEDTRETDLQELFRPFGSISRIYL   47 (103)
T ss_dssp             SSSEEEE--EESCCTTCCHHHHHTTSTTTCCEEEEEE
T ss_pred             CCCCEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEE
Confidence            3455554  5699999999999999999998766544

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.66  E-value=2.3  Score=24.90  Aligned_cols=28  Identities=11%  Similarity=-0.043  Sum_probs=23.8

Q ss_pred             EcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          64 IGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        64 I~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        10 v~nlp~~~t~~~l~~~f~~~G~v~~v~i   37 (95)
T 2dnz_A           10 VGSLHFNITEDMLRGIFEPFGKIDNIVL   37 (95)
T ss_dssp             EESCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred             EeCCCCCCCHHHHHHHHHhcCCEeEEEE
Confidence            5798899999999999999997765544

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.59  E-value=1.2  Score=26.20  Aligned_cols=29  Identities=10%  Similarity=0.044  Sum_probs=24.2

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      -|.|.-+.+|-|-|..+|++||.+.-|.+
T Consensus        14 ~V~nLp~~~t~~~l~~~F~~~G~v~~v~~   42 (92)
T 2dgt_A           14 HVGNISPTCTNQELRAKFEEYGPVIECDI   42 (92)
T ss_dssp             EEESCCSSCCHHHHHHHHHTTSCCCEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence            36799999999999999999997665543

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=81.41  E-value=2.4  Score=24.33  Aligned_cols=29  Identities=10%  Similarity=-0.096  Sum_probs=24.4

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      -|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        10 ~v~nlp~~~t~~~l~~~F~~~G~i~~v~i   38 (87)
T 3bs9_A           10 FVGDLSPEITTAAIAAAFAPFGRISDARV   38 (87)
T ss_dssp             EEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCEeEEEE
Confidence            36798899999999999999998765544

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=81.37  E-value=2  Score=26.06  Aligned_cols=35  Identities=6%  Similarity=-0.042  Sum_probs=27.3

Q ss_pred             CCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          55 SNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        55 ~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      .+++-|.  |.|.-+.+|-|-|..+|++||.+.-|-+
T Consensus        20 ~~~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~i   54 (109)
T 1x4a_A           20 NNDCRIY--VGNLPPDIRTKDIEDVFYKYGAIRDIDL   54 (109)
T ss_dssp             CCSSEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred             CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence            3445444  5799899999999999999998766543

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=81.13  E-value=2.5  Score=25.24  Aligned_cols=34  Identities=15%  Similarity=0.005  Sum_probs=26.5

Q ss_pred             CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      +.+-|.  |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        14 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~v~i   47 (103)
T 2cq3_A           14 TPKRLH--VSNIPFRFRDPDLRQMFGQFGKILDVEI   47 (103)
T ss_dssp             CCCEEE--EESCCTTCCHHHHHHHGGGTSCEEEEEE
T ss_pred             CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence            344443  5799899999999999999998766544

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=80.95  E-value=1.4  Score=27.26  Aligned_cols=28  Identities=7%  Similarity=-0.212  Sum_probs=23.8

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIVC   90 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v~   90 (94)
                      -|.|.-+.+|-|-|..+|++||.+.-|.
T Consensus        14 ~V~nLp~~~te~~L~~~F~~~G~i~~v~   41 (111)
T 1whx_A           14 LAKNLPAGTLAAEIQETFSRFGSLGRVL   41 (111)
T ss_dssp             EEESCCTTCCHHHHHHHHHTTSCEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCEEEEE
Confidence            3679889999999999999999876553

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=80.84  E-value=2.2  Score=26.06  Aligned_cols=35  Identities=14%  Similarity=-0.086  Sum_probs=27.7

Q ss_pred             CCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          55 SNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        55 ~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      .+++.|.  |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus         6 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~i   40 (115)
T 3lqv_A            6 EVNRILY--IRNLPYKITAEEMYDIFGKYGPIRQIRV   40 (115)
T ss_dssp             TCCSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred             CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence            4455543  6798899999999999999998776644

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=80.76  E-value=2.1  Score=26.25  Aligned_cols=29  Identities=10%  Similarity=-0.151  Sum_probs=24.6

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      -|.|.-+.+|-|-|..+|++||.+.-|-+
T Consensus        44 ~V~nlp~~~t~~~l~~~F~~~G~i~~~~i   72 (118)
T 2khc_A           44 FIYHLPQEFTDTDLASTFLPFGNVISAKV   72 (118)
T ss_dssp             EEECSCTTCCHHHHHHHTTTSCEEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence            36799999999999999999997765543

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=80.51  E-value=1.7  Score=26.07  Aligned_cols=34  Identities=15%  Similarity=0.031  Sum_probs=26.7

Q ss_pred             CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      +++-|.  |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i   47 (103)
T 2cqi_A           14 QPRTLY--VGNLSRDVTEVLILQLFSQIGPCKSCKM   47 (103)
T ss_dssp             CCCEEE--EESCCTTCCHHHHHHHHHHHSCEEEEEE
T ss_pred             CCCEEE--EeCCCccCCHHHHHHHHHhcCCEeEEEE
Confidence            344444  5798899999999999999998776544

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=80.39  E-value=2.5  Score=25.70  Aligned_cols=29  Identities=3%  Similarity=-0.143  Sum_probs=24.9

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      -|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        19 ~V~nLp~~~t~~~l~~~F~~~G~i~~~~i   47 (108)
T 1x4c_A           19 VVSGLPPSGSWQDLKDHMREAGDVCYADV   47 (108)
T ss_dssp             EEESCCSSCCHHHHHHHHGGGSCEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCEeEEEE
Confidence            46899999999999999999998766544

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.34  E-value=2.3  Score=24.82  Aligned_cols=34  Identities=12%  Similarity=-0.012  Sum_probs=26.5

Q ss_pred             CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      +++.|.  |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus        15 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~v~i   48 (94)
T 2e5h_A           15 SKSTVY--VSNLPFSLTNNDLYRIFSKYGKVVKVTI   48 (94)
T ss_dssp             CTTSEE--EESCCTTSCHHHHHHHTTTTSCEEEEEE
T ss_pred             CCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence            344443  5788899999999999999998766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	94
d2cq1a1	88	d.58.7.1 (A:51-138) Polypyrimidine tract-binding p	7e-07
d1x4da1	89	d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [	3e-04

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 7e-07
 Identities = 25/50 (50%), Positives = 34/50 (68%)

Query: 1  MYDYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50
          +    + QAFLE+A E AA TMV Y++     LR + +Y+Q+SNHKELKT
Sbjct: 39 LMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKT 88

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (79), Expect = 3e-04
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 1  MYDYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN-HKELK 49
          +      +AF+EMA    A   V Y+TT  A + G+ V V  S  +K +K
Sbjct: 40 LILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIK 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	94
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	99.17
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	99.09
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	98.95
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	98.73
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	98.47
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	98.1
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	98.07
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	97.86
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	97.85
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	97.84
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	97.83
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	97.76
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	97.75
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	97.75
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	97.7
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	97.7
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	97.67
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	97.63
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	97.6
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	97.57
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	97.57
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	97.56
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	97.55
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	97.55
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	97.53
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	97.51
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	97.48
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	97.47
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	97.45
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	97.44
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	97.44
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	97.43
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	97.42
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	97.42
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	97.41
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	97.37
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	97.34
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	97.3
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	97.29
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	97.29
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	97.28
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	97.27
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	97.26
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	97.26
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	97.23
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	97.22
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	97.21
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	97.18
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	97.17
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	97.08
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	97.05
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	97.0
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	97.0
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	96.94
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	96.94
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	96.89
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	96.87
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	96.85
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	96.85
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	96.79
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	96.78
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	96.75
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	96.7
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	96.69
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	96.57
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	96.52
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	96.49
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	96.43
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	96.43
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	96.35
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	96.35
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	96.26
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	96.13
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	95.9
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	95.81
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	95.8
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	95.79
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	95.78
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	95.76
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	95.73
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	95.4
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	95.39
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	95.27
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	95.26
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	95.11
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	94.67
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	94.28
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	93.81
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	93.59
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	93.46
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	93.45
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	92.98
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	92.03
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	91.26
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	90.53
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	90.51
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	89.82
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	88.44
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	87.6
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	87.4
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	86.19
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	85.67
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	85.14
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	85.09
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	84.86
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	84.03
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	83.59
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	83.36
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	83.32
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	83.24
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	82.85
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	82.52
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	82.14
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	81.71
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	81.34
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	81.03
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	80.65
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	80.59

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=1.2e-11  Score=78.27  Aligned_cols=53  Identities=17%  Similarity=0.229  Sum_probs=48.4

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCC
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHS   55 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~   55 (94)
                      .+.|++|||||++.|+|.+++.++..+++.++|+++.++||++++++++...+
T Consensus        48 ~~~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v~~s~~~~~~~~~~~~  100 (104)
T d1wexa_          48 MPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNSG  100 (104)
T ss_dssp             ETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCCCSCCSC
T ss_pred             EecceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEEEEcCCCccCCCCCCC
Confidence            46799999999999999999999999999999999999999999999875443

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=5.8e-11  Score=72.76  Aligned_cols=48  Identities=52%  Similarity=0.759  Sum_probs=44.9

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      .+.|++|||||++.++|.++++++..++..++|+++.++||++++|++
T Consensus        41 ~~~~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v~~sk~~~lkt   88 (88)
T d2cq1a1          41 LKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKT   88 (88)
T ss_dssp             ETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCCC
T ss_pred             cccceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEEEECCCCCCCC
Confidence            367899999999999999999999999999999999999999999875

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=2.9e-10  Score=70.27  Aligned_cols=46  Identities=35%  Similarity=0.408  Sum_probs=42.3

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc-ceee
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN-HKEL   48 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~-~~eL   48 (94)
                      .+.|++|||+|++.++|.+|++++..+++.+.|+++.|+||+ +++|
T Consensus        42 ~~~k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~V~~s~~~~~l   88 (89)
T d1x4da1          42 LNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRI   88 (89)
T ss_dssp             CSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTTS
T ss_pred             eccceEEEEEEcchhhHHHHHHHHhhCCCccCCceEEEEECCCcccc
Confidence            467899999999999999999999999999999999999998 4555

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=3.2e-09  Score=66.49  Aligned_cols=46  Identities=33%  Similarity=0.307  Sum_probs=41.6

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc-ceee
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN-HKEL   48 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~-~~eL   48 (94)
                      .+.|++|||||++.++|.++++++..++..+.|+++.|+||+ +++|
T Consensus        52 ~~~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s~~~~~l   98 (99)
T d1x4fa1          52 MRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKL   98 (99)
T ss_dssp             ETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSS
T ss_pred             eecCCcEEEEecchHHHHHHHHHHhcCCceECCEEEEEEEcCCcccC
Confidence            467899999999999999999999999999999999999996 4544

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.4e-08  Score=62.12  Aligned_cols=49  Identities=18%  Similarity=0.174  Sum_probs=43.8

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD   51 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~   51 (94)
                      +++|.+|||||++.|+|..++......++..+|+++.++||+++++...
T Consensus        42 ~~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~~s~~~~~~~~   90 (108)
T d2adba1          42 KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVK   90 (108)
T ss_dssp             ETTEEEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEEECSSCSCCCC
T ss_pred             eCCCCeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEEecCCcccccc
Confidence            4567899999999999999999999998888999999999999887654

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.7e-06  Score=53.51  Aligned_cols=45  Identities=20%  Similarity=0.391  Sum_probs=38.8

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD   51 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~   51 (94)
                      +|.+|||||++.++|.++++.....  .+.|+++.++||+.+++..+
T Consensus        39 ~kg~afV~f~~~~~A~~ai~~lng~--~l~g~~l~v~~s~~~~~~~~   83 (109)
T d2adca1          39 KKENALVQMADGNQAQLAMSHLNGH--KLHGKPIRITLSKHQNVQLP   83 (109)
T ss_dssp             TSCCEEEEESCHHHHHHHHHHHTTC--BCSSSBCEEECCSCCCCCCC
T ss_pred             ccceEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEECCCCCCCCC
Confidence            4679999999999999999987755  67899999999998877553

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.9e-06  Score=51.81  Aligned_cols=43  Identities=16%  Similarity=0.124  Sum_probs=35.9

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      +++|+.|||||++.++|..+++.+...++ ..|+++.++||+.+
T Consensus        45 ~~~~~~afV~f~~~~~A~~A~~~l~~~~i-~~g~~l~v~~sk~~   87 (88)
T d2adca2          45 QKDRKMALIQMGSVEEAVQALIDLHNHDL-GENHHLRVSFSKST   87 (88)
T ss_dssp             SSSTTCEEEEESSHHHHHHHHHHHTTCBS-SSSCBCEEEECSSC
T ss_pred             ecccceeEEEECCHHHHHHHHHhccCCEe-cCCCEEEEEeCCCC
Confidence            46788999999999999999988776533 26999999999753

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=9.4e-06  Score=49.00  Aligned_cols=45  Identities=20%  Similarity=0.354  Sum_probs=39.1

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      +.|+.|||||++.++|..+++.+...  .+.|+++.++|+..+....
T Consensus        38 ~~kg~afV~f~~~~~A~~Ai~~ln~~--~~~G~~l~V~~a~~~~~~~   82 (88)
T d1wg1a_          38 RNKRTAFVTLLNGEQAQNAIQMFHQY--SFRGKDLIVQLQPTDALLC   82 (88)
T ss_dssp             GGGTEEEECCSCHHHHHHHHHHHTTE--EETTEEEEEEECCCCCCCS
T ss_pred             ccCCceEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEcCCCCCCC
Confidence            56899999999999999999988765  7899999999998766544

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=8.1e-06  Score=49.96  Aligned_cols=43  Identities=14%  Similarity=0.084  Sum_probs=37.1

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      .++|++|||||++.++|..+++.+....+.-+++++.++|+++
T Consensus        50 ~~~~~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l~v~~ak~   92 (97)
T d1whya_          50 VKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS   92 (97)
T ss_dssp             CSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred             eccccEEEeccCCHHHHHHHHHHhCCCEeCCCceEEEEEeCCC
Confidence            4678999999999999999999998776555567999999985

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.84  E-value=8.7e-06  Score=50.95  Aligned_cols=46  Identities=7%  Similarity=0.099  Sum_probs=40.5

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      .+.+++|||+|++.++|..+++.+...  .+.|+++.+.|+..+....
T Consensus        43 ~k~~~~afV~f~~~~~A~~Ai~~lng~--~~~g~~l~v~~a~~~~~~~   88 (104)
T d1weya_          43 FKSFKRVRINFSNPLSAADARLRLHKT--EFLGKEMKLYFAQTLHIGS   88 (104)
T ss_dssp             ETTTTEEEEECSSTTHHHHHHHTSTTS--EETTEECEEECCCCSSCCS
T ss_pred             ecCCCEEEEEECCHHHHHHHHHHhccc--ccCCCEeEEeecccCCCCC
Confidence            467899999999999999999998876  8899999999998766544

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=8.6e-06  Score=48.12  Aligned_cols=43  Identities=16%  Similarity=0.149  Sum_probs=37.6

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      .++|+.|||||++.++|..++..+...  .+.|+++.++|++.+-
T Consensus        36 ~~~~~~afV~f~~~~~A~~Ai~~lng~--~~~g~~l~V~~a~~~P   78 (79)
T d2bz2a1          36 DPPRNCAFVTYEKMESADQAVAELNGT--QVESVQLKVNIARKQP   78 (79)
T ss_dssp             ETTTTEEEEECSSHHHHHHHHHHHTTC--BCSSCBCEEEECCSSC
T ss_pred             ccCCCEEEEEEcccHHHHHHHHHhCCC--EECCEEEEEEEecCCC
Confidence            467899999999999999999988755  7899999999998653

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=1.2e-05  Score=48.36  Aligned_cols=43  Identities=21%  Similarity=0.332  Sum_probs=37.5

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      .+.|+.|||+|++.++|..++..+...  .+.|+++.++++++..
T Consensus        41 ~~~k~~afV~f~~~~~A~~A~~~l~g~--~i~g~~l~V~~A~~~~   83 (86)
T d2cpja1          41 HKDKGFGFIRLETRTLAEIAKVELDNM--PLRGKQLRVRFACHSA   83 (86)
T ss_dssp             ETTTTEEEEECSSSHHHHHHHHHHTTC--CBTTBCCEEEESSCCS
T ss_pred             ecccceEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEECCCcC
Confidence            357899999999999999999987655  6789999999999854

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=1.6e-05  Score=46.70  Aligned_cols=42  Identities=24%  Similarity=0.319  Sum_probs=37.0

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      .+.|+.||++|++.++|..+++.....  .+.|+++.+++++..
T Consensus        30 ~~~~g~afv~f~~~~~A~~Ai~~ln~~--~~~g~~l~V~~a~~d   71 (75)
T d1wi6a1          30 DKYKGTAFVTLLNGEQAEAAINTFHQS--RLRERELSVQLQPTD   71 (75)
T ss_dssp             ETTTTEEEEEESSHHHHHHHHHHHTTE--ESSSCEEEEEECCST
T ss_pred             cccceeEEEEECCHHHHHHHHHHhCCc--cCCCCEEEEEEeCCC
Confidence            467899999999999999999988654  789999999999764

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=2.1e-05  Score=46.83  Aligned_cols=40  Identities=15%  Similarity=0.162  Sum_probs=35.3

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      +.|+.|||+|.+.++|..+++....  ..+.|+++.++|++.
T Consensus        42 ~~rg~afV~f~~~~~A~~Ai~~l~~--~~i~g~~i~V~~akP   81 (86)
T d2cpda1          42 KIRDYAFVHFSNREDAVEAMKALNG--KVLDGSPIEVTLAKP   81 (86)
T ss_dssp             ECSSEEEEEESSHHHHHHHHHHHSS--EEETTEEEEEECCCC
T ss_pred             cccEEEEEEeCCHHHHHHHHHHcCC--CEECCEEEEEEeccC
Confidence            4688999999999999999998764  478999999999864

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.70  E-value=1.8e-05  Score=46.97  Aligned_cols=40  Identities=15%  Similarity=0.148  Sum_probs=33.3

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN   44 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~   44 (94)
                      .+|+.|||||+|.++|..++..+.... ...|+++.+.||+
T Consensus        43 ~~~g~afV~f~~~~~A~~A~~~l~g~~-~~~~~~i~v~~ak   82 (83)
T d2b0ga1          43 NRHDIAFVEFTTELQSNAAKEALQGFK-ITPTHAMKITFAK   82 (83)
T ss_dssp             TTCSCEEEEESSHHHHHHHHHHHTTCB-SSTTCBCEEEECC
T ss_pred             ccceeEEEecCCHHHHHHHHHHhCCcE-eCCCcEEEEEEec
Confidence            456799999999999999999887543 2358999999986

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.8e-05  Score=46.81  Aligned_cols=43  Identities=21%  Similarity=0.299  Sum_probs=36.6

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      ++|+.|||||.+.++|..+++.+.. ...+.|+++.++|+..++
T Consensus        35 ~~rg~aFV~f~~~~~A~~Ai~~lng-~~~~~G~~i~V~~a~~k~   77 (80)
T d2cqha1          35 LKSGYAFVDYPDQNWAIRAIETLSG-KVELHGKIMEVDYSVSKK   77 (80)
T ss_dssp             EETTEEEECCSCHHHHHHHHHHHTT-TCEETTEECEEEECCCCC
T ss_pred             cccceEEEEECCHHHHHHHHHHhCC-CeEECCEEEEEEEcCCcC
Confidence            4578999999999999999987753 347999999999998654

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=3.7e-05  Score=45.11  Aligned_cols=37  Identities=16%  Similarity=0.253  Sum_probs=33.0

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN   44 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~   44 (94)
                      |.-|||||++.|+|..++..+...  .++|+++.++||+
T Consensus        43 ~g~afV~f~~~e~A~~Ai~~l~g~--~~~g~~i~V~~a~   79 (81)
T d2ghpa1          43 RRFAYIDVTSKEDARYCVEKLNGL--KIEGYTLVTKVSN   79 (81)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHTTC--EETTEECEEEECC
T ss_pred             cceeEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEcc
Confidence            456999999999999999987655  8899999999986

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=4.1e-05  Score=46.08  Aligned_cols=40  Identities=13%  Similarity=0.221  Sum_probs=34.8

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      .|+.|||||++.++|..+++.+...  .++|+++.+.|++.+
T Consensus        45 ~~g~afV~F~~~~~A~~A~~~~~~~--~~~g~~l~v~~ak~~   84 (91)
T d1nu4a_          45 MRGQAFVIFKEVSSATNALRSMQGF--PFYDKPMRIQYAKTD   84 (91)
T ss_dssp             HTTCEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECSSC
T ss_pred             CCCceEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEeCCC
Confidence            3689999999999999999887644  789999999999754

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=3.4e-05  Score=46.76  Aligned_cols=42  Identities=21%  Similarity=0.230  Sum_probs=37.3

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      .|..|||+|++.++|..++.........+.|+++.+++++.+
T Consensus        44 ~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~~A~p~   85 (96)
T d2disa1          44 NRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPE   85 (96)
T ss_dssp             TCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSS
T ss_pred             CCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEEEcCCC
Confidence            456899999999999999999987778889999999999753

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=6e-05  Score=46.03  Aligned_cols=41  Identities=10%  Similarity=0.161  Sum_probs=35.7

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      .+.|+.|||+|++.++|..++......  .+.|+++.+.|++.
T Consensus        51 ~~~kg~afV~f~~~~~A~~Ai~~l~~~--~i~g~~l~v~~ak~   91 (96)
T d1x4ga1          51 FPEKGYSFVRFSTHESAAHAIVSVNGT--TIEGHVVKCYWGKE   91 (96)
T ss_dssp             ETTTTEEEEEESSHHHHHHHHHHHTTC--EETTEECEEECCCC
T ss_pred             EecceEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEcCC
Confidence            356899999999999999999987644  68999999999875

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=6.8e-05  Score=44.95  Aligned_cols=39  Identities=15%  Similarity=0.323  Sum_probs=34.2

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      +|+.|||||++.++|..+++.+...  .+.|+++.++|++.
T Consensus        47 ~~~~afV~f~~~~~A~~A~~~l~~~--~~~g~~i~v~~a~~   85 (90)
T d2cqia1          47 NDPYCFVEFYEHRDAAAALAAMNGR--KILGKEVKVNWATT   85 (90)
T ss_dssp             SCCEEEEEESSHHHHHHHHHHHTTE--EETTEEEEEEECCC
T ss_pred             cceeeEEEECCHHHHHHHHHHcCCC--EECCEEEEEEEcCC
Confidence            4678999999999999999987654  78999999999864

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.56  E-value=7e-05  Score=43.83  Aligned_cols=37  Identities=14%  Similarity=0.287  Sum_probs=33.1

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN   44 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~   44 (94)
                      |..|||||++.++|..+++.+...  .+.|+++.++||+
T Consensus        44 ~g~afV~f~~~~~A~~ai~~lng~--~~~g~~l~v~~a~   80 (82)
T d1b7fa1          44 YGYAFVDFTSEMDSQRAIKVLNGI--TVRNKRLKVSYAR   80 (82)
T ss_dssp             CSEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECC
T ss_pred             cccceEEECCHHHHHHHHHHhCCC--EECCEEEEEEEcC
Confidence            567999999999999999988765  7899999999985

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=3.9e-05  Score=46.63  Aligned_cols=42  Identities=19%  Similarity=0.301  Sum_probs=36.2

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      +.+..|||+|++.++|..++..+...  .+.|+++.++|++.++
T Consensus        58 ~~~g~~fV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~ak~k~   99 (102)
T d2cpxa1          58 RMRGQAFITFPNKEIAWQALHLVNGY--KLYGKILVIEFGKNKK   99 (102)
T ss_dssp             SSCSEEEEECSSHHHHHHHHHHSTTC--BCSSCBCEEEECCCCS
T ss_pred             cccccceEEeccHHHHHHHHHHhCCC--EECCEEEEEEeCCCcc
Confidence            35678999999999999999987654  6799999999998764

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=7.7e-05  Score=45.74  Aligned_cols=42  Identities=14%  Similarity=0.187  Sum_probs=36.4

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      .|+.|||||++.++|..++......  .+.|+++.+.+++.+.-
T Consensus        49 ~rg~aFV~f~~~~~A~~Ai~~lng~--~~~g~~l~V~~a~~~~~   90 (98)
T d1wf2a_          49 HKGFAFVQYVNERNARAAVAGEDGR--MIAGQVLDINLAAEPKV   90 (98)
T ss_dssp             ETEEEEEEESSHHHHHHHHHTTTTC--EETTEECEEEETTSCCC
T ss_pred             eCCeEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEECCCCCC
Confidence            4789999999999999999988654  78999999999986544

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=7e-05  Score=45.28  Aligned_cols=41  Identities=20%  Similarity=0.264  Sum_probs=35.4

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      +.|..|||||++.++|..++..+...  .+.|+++.+++++.+
T Consensus        56 ~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~gr~i~V~~a~~~   96 (101)
T d2cpea1          56 KPKGDATVSYEDPPTAKAAVEWFDGK--DFQGSKLKVSLARKK   96 (101)
T ss_dssp             SBCSEEEEEBSSHHHHHHHHHHHTTC--EETTEECEEECSSCC
T ss_pred             cccceeeEEecCHHHHHHHHHHhCCC--EECCEEEEEEEcCCC
Confidence            44678999999999999999987765  789999999998753

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=5.5e-05  Score=46.80  Aligned_cols=36  Identities=19%  Similarity=0.234  Sum_probs=32.1

Q ss_pred             CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEE
Q psy9170          54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIV   89 (94)
Q Consensus        54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v   89 (94)
                      +.++.+|.+-|.|.-|.||-|-|+++|++||.+.-+
T Consensus         2 ~~~s~~~~v~V~NL~~~vte~~L~~~F~~~G~i~~~   37 (108)
T d2adba1           2 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKI   37 (108)
T ss_dssp             CCCCCEEEEESCSCCSTTHHHHHHHHHTTTSCEEEE
T ss_pred             CCCCCeEEEEEeCcCCCCCHHHHHHHHccCCcEEEE
Confidence            357889999999999999999999999999976544

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=7.5e-05  Score=43.61  Aligned_cols=37  Identities=14%  Similarity=0.229  Sum_probs=32.6

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN   44 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~   44 (94)
                      |..|||||++.++|..++..+...  .+.|+++.++|++
T Consensus        44 ~g~afv~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~Ak   80 (82)
T d1fxla1          44 LGYGFVNYIDPKDAEKAINTLNGL--RLQTKTIKVSYAR   80 (82)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECC
T ss_pred             eeeEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEee
Confidence            457999999999999999988754  7899999999975

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.0003  Score=45.76  Aligned_cols=82  Identities=10%  Similarity=0.030  Sum_probs=60.0

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc--CCCCCCcEEEEEEcccCCceeHhHHHhhhcc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD--QTHSNALLLHLTIGIILRPATHYQVHLIRSA   82 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~--~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~   82 (94)
                      .|+.||+||.+.++|..++.-   ....+.++++.+.....++-...  .....++   +-|.|.-+.+|-+-|..+|+.
T Consensus        47 ~~g~afv~f~~~~~a~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~V~~lp~~~te~~L~~~f~~  120 (183)
T d1u1qa_          47 SRGFGFVTYATVEEVDAAMNA---RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK---IFVGGIKEDTEEHHLRDYFEQ  120 (183)
T ss_dssp             EEEEEEEEESSHHHHHHHHHT---CSCEETTEECEEEECCCTTGGGSTTTTCCCSE---EEEECCCTTCCHHHHHHHHGG
T ss_pred             ccCceecccCCHHHHHHHHHh---cCCcccccchhhhhhhhcccccccccccccce---eEEccCCCcCCHHHHhhhhcc
Confidence            466899999999999988764   44567788887776654443222  1223344   357888899999999999999


Q ss_pred             ccceEEEEEE
Q psy9170          83 CQVYLIVCVL   92 (94)
Q Consensus        83 ~g~~~~v~~~   92 (94)
                      ||.+..|.+.
T Consensus       121 ~G~v~~~~i~  130 (183)
T d1u1qa_         121 YGKIEVIEIM  130 (183)
T ss_dssp             GSCEEEEEEE
T ss_pred             CCceeeeeee
Confidence            9988877654

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=9.3e-05  Score=44.23  Aligned_cols=41  Identities=20%  Similarity=0.286  Sum_probs=35.0

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      |.-|||+|++.++|..++..+..  ..+.|+++.++++..++.
T Consensus        47 kg~afV~f~~~~~A~~ai~~l~~--~~i~g~~l~v~~a~p~~~   87 (89)
T d2cqba1          47 RGFAFVEFELAEDAAAAIDNMNE--SELFGRTIRVNLAKPMRI   87 (89)
T ss_dssp             SSEEEECCSSHHHHHHHHHHHTT--EEETTEEEEEEECCCCCC
T ss_pred             cceeEEEECCHHHHHHHHHHcCC--CEECCEEEEEEEeCCCCC
Confidence            55799999999999999988764  478999999999976544

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=8.6e-05  Score=44.98  Aligned_cols=42  Identities=12%  Similarity=0.252  Sum_probs=34.9

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      .|.-|||+|++.++|..+++..... ..+.|+++.++|++.++
T Consensus        50 ~rg~afV~f~~~~~A~~Ai~~l~~~-~~~~Gr~l~V~~A~~~~   91 (94)
T d2cpha1          50 HRGFGFVDFITKQDAKKAFNALCHS-THLYGRRLVLEWADSEV   91 (94)
T ss_dssp             SCSEEEEEESSHHHHHHHHHHHHTC-CBSSSCBCEEEECCCCC
T ss_pred             cccEEEEEECCHHHHHHHHHHccCC-cEECCEEEEEEEcCCCC
Confidence            3668999999999999999986432 35899999999998764

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00013  Score=42.73  Aligned_cols=39  Identities=21%  Similarity=0.224  Sum_probs=33.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |..|||||++.++|..++......  .+.|+++.++++..+
T Consensus        41 ~g~afV~f~~~~~a~~Ai~~~~g~--~~~gr~l~v~~a~~k   79 (83)
T d1x5ta1          41 KGYAFINFASFDASDAAIEAMNGQ--YLCNRPITVSYAFKK   79 (83)
T ss_dssp             CSEEEEEBSSHHHHHHHHHTTTTC--EETTEECEEEESCCC
T ss_pred             CceEEEEECCHHHHHHHHHhCCCc--EECCEEEEEEEecCC
Confidence            567999999999999999877644  789999999998754

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=8.7e-05  Score=43.56  Aligned_cols=38  Identities=13%  Similarity=0.229  Sum_probs=33.7

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      |..|||||.+.++|..+++.+...  .+.|+++.++||+.
T Consensus        42 ~g~aFV~f~~~~~a~~ai~~l~g~--~~~gr~i~v~~a~~   79 (80)
T d1cvja1          42 LGYAYVNFQQPADAERALDTMNFD--VIKGKPVRIMWSQR   79 (80)
T ss_dssp             EEEEEEEESSHHHHHHHHTTSTTC--EETTEECEEEECCC
T ss_pred             CCceEEEECCHHHHHHHHHHcCCC--EECCEEEEEEEeCC
Confidence            568999999999999999888755  78999999999964

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00013  Score=44.04  Aligned_cols=40  Identities=13%  Similarity=0.169  Sum_probs=35.3

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+++++.+.
T Consensus        51 kg~afV~f~~~~~a~~Ai~~l~~~--~~~g~~l~V~~A~~r~   90 (93)
T d2cq3a1          51 KGFGFVTFENSADADRAREKLHGT--VVEGRKIEVNNATARV   90 (93)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHTTC--EETTEECEEEECCSSC
T ss_pred             cceeEEEECCHHHHHHHHHHcCCC--EECCEEEEEEecCcCC
Confidence            678999999999999999987654  8899999999988654

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.42  E-value=8.9e-05  Score=44.31  Aligned_cols=39  Identities=15%  Similarity=0.165  Sum_probs=33.5

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |.-|||||++.++|..++..+...  .+.|+++.++|+..+
T Consensus        49 ~g~afV~f~~~~~A~~A~~~lng~--~l~g~~l~V~~a~~k   87 (88)
T d1rk8a_          49 KGYALVEYETHKQALAAKEALNGA--EIMGQTIQVDWCFVK   87 (88)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEESEEC
T ss_pred             ccceeEEECCHHHHHHHHHHcCCC--EECCEEEEEEEecCC
Confidence            446999999999999999987654  789999999998754

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=7.9e-05  Score=43.96  Aligned_cols=38  Identities=16%  Similarity=0.167  Sum_probs=32.9

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      |..|||||++.++|..+++.+...  .+.|+++.++++..
T Consensus        43 kG~afV~f~~~~~A~~A~~~~~~~--~~~g~~i~V~~a~~   80 (85)
T d2cpfa1          43 MGFGFVEYKKPEQAQKALKQLQGH--TVDGHKLEVRISER   80 (85)
T ss_dssp             EEEEEEEESSHHHHHHHHHHSTTC--EETTEECEEECSSC
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEECCC
Confidence            456999999999999999887644  78999999999864

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=0.00019  Score=41.86  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=32.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      |.-|||||++.++|..+++.+...  .+.|+++.+++.++
T Consensus        41 ~g~afV~f~~~~~A~~Ai~~l~g~--~l~g~~l~V~~a~S   78 (78)
T d1no8a_          41 LGTADVHFERKADALKAMKQYNGV--PLDGRPMNIQLVTS   78 (78)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHTTC--EETTEECEEEEECC
T ss_pred             ceeEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEeeC
Confidence            558999999999999999987654  78999999998653

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=97.34  E-value=0.00011  Score=44.45  Aligned_cols=42  Identities=21%  Similarity=0.304  Sum_probs=35.6

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      +.|..|||||++.++|..++..+..  ..+.|+++.+.|++.+.
T Consensus        51 ~~~~~afV~f~~~~~A~~A~~~l~~--~~~~gr~i~V~~a~~k~   92 (96)
T d1fjca_          51 KSKGIAYIEFKSEADAEKNLEEKQG--AEIDGRSVSLYYTGEKG   92 (96)
T ss_dssp             EEEEEEEEEESSHHHHHHHHHHTTE--EEETTEEEEEEECSSSC
T ss_pred             ccccEEEEEeCCHHHHHHHHHHcCC--CEECCEEEEEEEeCCCC
Confidence            3467899999999999999987754  48899999999998653

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00012  Score=43.67  Aligned_cols=39  Identities=18%  Similarity=0.219  Sum_probs=33.7

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |.-|||||++.++|..++......  .+.|+++.+++++.+
T Consensus        48 kg~afV~f~~~~~A~~Ai~~l~g~--~~~g~~i~V~~a~~~   86 (89)
T d1cvja2          48 KGYGFVHFETQEAAERAIEKMNGM--LLNDRKVFVGRFKSR   86 (89)
T ss_dssp             CSCEEEEESCHHHHHHHTTSSSEE--EETTEEEEEEECCCT
T ss_pred             cceeEEEECCHHHHHHHHHHcCCC--EECCEEEEEEECCCC
Confidence            567999999999999999876644  789999999998754

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00011  Score=44.48  Aligned_cols=40  Identities=18%  Similarity=0.251  Sum_probs=34.3

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      .|..|||||.+.++|..++..+...  .+.|+++.+++++.+
T Consensus        50 ~kg~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~A~~~   89 (93)
T d1x5ua1          50 HQGYGFVEFLSEEDADYAIKIMDMI--KLYGKPIRVNKASAH   89 (93)
T ss_dssp             BCSCEEEEESSHHHHHHHHHHSSSC--BCSSCBCEEEETTTT
T ss_pred             cccceEEEECCHHHHHHHHHHcCCC--EECCEEEEEEEcCCC
Confidence            4568999999999999999887644  689999999998764

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=0.00011  Score=44.92  Aligned_cols=45  Identities=11%  Similarity=0.176  Sum_probs=37.9

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK   49 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~   49 (94)
                      ++.|..|||+|++.++|..++..+...  .+.|++++++|.......
T Consensus        43 ~~~kg~afV~f~~~~~A~~A~~~lng~--~~~gr~l~v~~a~~~~~~   87 (111)
T d1whxa_          43 PEGGITAIVEFLEPLEARKAFRHLAYS--KFHHVPLYLEWAPIGVFG   87 (111)
T ss_dssp             CSSSSCEEEEESCHHHHHHHHHHHTTC--BSSSSBCEEEEEETTTTC
T ss_pred             eccCceEEEEEcCHHHHHHHHHHHcCC--ccCCCeEEEEECCCCccc
Confidence            467899999999999999999988765  678999999998765433

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00023  Score=43.29  Aligned_cols=40  Identities=10%  Similarity=0.117  Sum_probs=32.9

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      .|..|||||++.|+|.++++.   +...+.|+++.|++++.+.
T Consensus        56 ~~g~afV~f~~~e~a~~~~~~---~~~~~~gr~l~V~~a~~~~   95 (104)
T d1wi8a_          56 LKGFGYAEFEDLDSLLSALSL---NEESLGNKRIRVDVADQAQ   95 (104)
T ss_dssp             BCSCEEEEESSHHHHHHHHGG---GTCEETTEECEEEECCCCC
T ss_pred             cceeeeEEECCHHHHHHHHHc---CCCEECCEEEEEEECCCCC
Confidence            356899999999999988863   3457999999999988653

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00014  Score=44.66  Aligned_cols=39  Identities=15%  Similarity=0.237  Sum_probs=33.7

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |..|||||++.++|..+++.+...  .+.|+++.|+++..+
T Consensus        60 kG~afV~f~~~~~A~~Ai~~lng~--~~~g~~i~V~~a~~k   98 (102)
T d2cpza1          60 KCFGFVSYDNPVSAQAAIQSMNGF--QIGMKRLKVQLKRSK   98 (102)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHTTC--EETTEECEEECCCCS
T ss_pred             ccceEEEeCCHHHHHHHHHHhCCC--EECCEEEEEEEeCCC
Confidence            457999999999999999887644  789999999998754

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.00022  Score=42.66  Aligned_cols=42  Identities=19%  Similarity=0.190  Sum_probs=35.1

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhc----cCceEeCeEEEEEeccce
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTT----CVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~----~p~~irg~~vyiqyS~~~   46 (94)
                      .|.-|||||.+.++|..+++.+..    ....+.|+++.+++++.+
T Consensus        49 ~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~l~v~~a~~k   94 (98)
T d1x4ha1          49 SKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTR   94 (98)
T ss_dssp             BCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCC
T ss_pred             ccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEEEEEEECCCC
Confidence            356799999999999999998752    345799999999998753

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=0.00027  Score=41.90  Aligned_cols=37  Identities=16%  Similarity=0.274  Sum_probs=31.5

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      |.-|||||++.++|..+++ .  +...+.|+++.+++|+.
T Consensus        48 kg~afV~f~~~~~a~~Al~-~--n~~~~~gr~l~V~~a~~   84 (86)
T d2ghpa3          48 NCCAFMVFENKDSAERALQ-M--NRSLLGNREISVSLADK   84 (86)
T ss_dssp             CEEEEEEESSHHHHHHHGG-G--TTEEETTEEEEEEECCC
T ss_pred             ceeeeEEECCHHHHHHHHh-c--CCCEECCEEEEEEEcCC
Confidence            4569999999999999986 3  45579999999999874

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00019  Score=44.54  Aligned_cols=38  Identities=13%  Similarity=0.134  Sum_probs=34.2

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS   43 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS   43 (94)
                      +.|.-|||||++.++|..+++.....  .+.||++.++||
T Consensus        66 ~~~G~~fV~f~~~~~A~~Ai~~lng~--~~~gr~i~v~~s  103 (104)
T d1jmta_          66 HLVGNVYVKFRREEDAEKAVIDLNNR--WFNGQPIHAELS  103 (104)
T ss_dssp             SSEEEEEEEESCHHHHHHHHHHHTTC--EETTEECCEEEC
T ss_pred             CEeeEEEEEEechhHHHHHHHHHCCC--EECCEEEEEEEC
Confidence            44678999999999999999998866  889999999997

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00022  Score=42.58  Aligned_cols=38  Identities=11%  Similarity=0.079  Sum_probs=33.0

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      |..|||+|++.++|..++..+..  ..+.|+++.++|++-
T Consensus        50 rg~afV~f~~~~~A~~Ai~~l~g--~~~~g~~i~v~~akp   87 (90)
T d2cq0a1          50 KGFAFISFHRREDAARAIAGVSG--FGYDHLILNVEWAKP   87 (90)
T ss_dssp             EEEEEEEESSHHHHHHHHHHTTT--CEETTEECEEEESSC
T ss_pred             ccceeEEECCHHHHHHHHHHhCC--CEECCEEEEEEeeeC
Confidence            44799999999999999998764  478999999999864

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00034  Score=43.07  Aligned_cols=40  Identities=15%  Similarity=0.155  Sum_probs=35.2

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      .|..|||||++.++|..++..+...  .+.|+++.+.++..+
T Consensus        45 ~kG~afV~f~~~~~A~~Ai~~l~g~--~~~gr~l~V~~a~~~   84 (114)
T d2f9da1          45 TRGTAYVVYEDIFDAKNACDHLSGF--NVCNRYLVVLYYNAN   84 (114)
T ss_dssp             TTTEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCHH
T ss_pred             cCCeEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEcCCC
Confidence            4678999999999999999988765  689999999998754

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00017  Score=44.19  Aligned_cols=43  Identities=19%  Similarity=0.224  Sum_probs=35.8

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT   50 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~   50 (94)
                      .|..|||||++.|+|.++++. .  .-.|+||+|.+..++.++...
T Consensus        56 ~kG~afV~F~~~e~a~~a~~~-~--~~~i~gR~i~V~~~~~~~~~~   98 (104)
T d1wg5a_          56 STGEAFVQFASQEIAEKALKK-H--KERIGHRYIEIFKSSRAEVRT   98 (104)
T ss_dssp             BCSEEEEEESSHHHHHHHHTT-T--TCCSSSSCCEEEEECTTTSCC
T ss_pred             cceEEEEEeCCHHHHHHHHhh-C--CCEEcceEEEEEECCHHHhcc
Confidence            356799999999999998874 2  346899999999999887655

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00035  Score=42.05  Aligned_cols=41  Identities=22%  Similarity=0.160  Sum_probs=35.1

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      ..|.-|||+|++.|+|..++..+...  .+.|+++.++|++..
T Consensus        51 ~~~g~afV~f~~~e~a~~Ai~~l~g~--~~~g~~l~V~~a~~~   91 (95)
T d1x4aa1          51 GGPPFAFVEFEDPRDAEDAVYGRDGY--DYDGYRLRVEFPRSG   91 (95)
T ss_dssp             SSSCCEEEEESCHHHHHHHHHHHTTC--EETTEECEEECCCCC
T ss_pred             cccceEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEeccCC
Confidence            34678999999999999999887655  789999999998753

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.0004  Score=41.97  Aligned_cols=40  Identities=20%  Similarity=0.057  Sum_probs=34.4

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      |..|||||++.++|..++..+...  .+.|+++.+.+++.++
T Consensus        50 ~g~afV~f~~~~~a~~A~~~l~g~--~~~gr~i~V~~a~~~~   89 (99)
T d1whwa_          50 KGFAFVTFMFPEHAVKAYAEVDGQ--VFQGRMLHVLPSTIKK   89 (99)
T ss_dssp             CSEEEEEESSHHHHHHHHHHTTTE--ESSSCEEEEEECCCCS
T ss_pred             CcceEEEECCHHHHHHHHHHcCCC--EECCEEEEEEECCCCC
Confidence            568999999999999999877543  7899999999998754

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00025  Score=42.06  Aligned_cols=40  Identities=20%  Similarity=0.174  Sum_probs=34.6

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      +.|..|||||.+.++|..++..+...  .+.|+++.+++++.
T Consensus        41 ~~rg~aFV~f~~~~~A~~a~~~l~~~--~l~g~~l~V~~A~~   80 (85)
T d2u2fa_          41 LSKGYAFCEYVDINVTDQAIAGLNGM--QLGDKKLLVQRASV   80 (85)
T ss_dssp             CCCCEEEEEESSSHHHHHHHHTSSSC--CCSSSCCEEEECCC
T ss_pred             ccceeEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEECCC
Confidence            34789999999999999999987654  68999999999874

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00027  Score=42.11  Aligned_cols=40  Identities=20%  Similarity=0.187  Sum_probs=33.0

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      ..|..|||||+|.++|.+++.    +...+.|+++.+.++..++
T Consensus        40 ~~~gfafV~f~~~~~a~~a~~----~~~~i~g~~l~v~~a~~k~   79 (88)
T d1wf0a_          40 PFRAFAFVTFADDQIAQSLCG----EDLIIKGISVHISNAEPKH   79 (88)
T ss_dssp             SCCSCCEEECSCHHHHHHTTT----CEEEETTEEEEEECCCCCC
T ss_pred             ccCceEEEEECCHHHHHHHHh----CCCEECCEEeEEEeCCCCC
Confidence            357789999999999998874    4568999999999986543

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00045  Score=41.54  Aligned_cols=38  Identities=16%  Similarity=0.237  Sum_probs=32.7

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      |+-|||||++.++|..++..+...  .+.|+++.++|+..
T Consensus        49 kg~afV~f~~~~~A~~Ai~~l~g~--~~~gr~i~V~~a~~   86 (93)
T d1h2vz_          49 CGFCFVEYYSRADAENAMRYINGT--RLDDRIIRTDWDAG   86 (93)
T ss_dssp             EEEEEEEESSHHHHHHHHHHTTTS--EETTEECEEEEESC
T ss_pred             cceEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEcCC
Confidence            346999999999999999987654  78999999999864

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.94  E-value=0.00053  Score=43.65  Aligned_cols=41  Identities=7%  Similarity=0.134  Sum_probs=34.9

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      |+.|||||++.++|..++..+...  .+.|+++.+++++.++-
T Consensus        84 rg~afV~f~~~~~A~~Ai~~lng~--~~~gr~l~V~~a~~~~~  124 (139)
T d1u6fa1          84 RGYGFVKFQSGSSAQQAIAGLNGF--NILNKRLKVALAASGHQ  124 (139)
T ss_dssp             EEEEEEEESSHHHHHHHHHHTTTE--ECSSCEEEEEESSCCCC
T ss_pred             cceeeEEECCHHHHHHHHHHhCCC--EECCEEEEEEEcCCCCC
Confidence            557999999999999999877544  78999999999986553

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00089  Score=38.78  Aligned_cols=37  Identities=16%  Similarity=-0.013  Sum_probs=29.9

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS   43 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS   43 (94)
                      .++..|||||++.++|..++..   +.-.+.|+++.+.-.
T Consensus        38 ~~~~~afV~F~~~~~a~~Al~~---~~~~i~g~~i~V~~~   74 (75)
T d2ghpa2          38 KNFRFARIEFARYDGALAAITK---THKVVGQNEIIVSHL   74 (75)
T ss_dssp             SSSEEEEEEESSHHHHHHHHTT---TTCEETTEECEEEEC
T ss_pred             ccceEEEEEEcchHHhHHHHHh---cCcEECCEEEEEEEC
Confidence            3456899999999999999864   334799999998754

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00089  Score=40.85  Aligned_cols=39  Identities=15%  Similarity=0.067  Sum_probs=34.3

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN   44 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~   44 (94)
                      +.+..|||+|++.++|..+++.....  .+.||++.++|..
T Consensus        55 ~~~G~~fV~f~~~e~A~~A~~~lng~--~~~gr~i~v~~~~   93 (99)
T d2dita1          55 HPDGVASVSFRDPEEADYCIQTLDGR--WFGGRQITAQAWD   93 (99)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHSTTC--EETTEECEEEECC
T ss_pred             CCccEEEEEECCHHHHHHHHHHhCCc--EECCEEEEEEEeC
Confidence            44678999999999999999998766  8999999999864

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=96.87  E-value=0.0011  Score=39.73  Aligned_cols=40  Identities=3%  Similarity=0.108  Sum_probs=33.3

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      +.|.-|||+|++.++|..+++ .  +...+.|+++.+.+++.+
T Consensus        52 ~~kg~afv~F~~~e~a~~Al~-~--~g~~~~g~~i~V~~ak~k   91 (91)
T d1fjeb1          52 TNRKFGYVDFESAEDLEKALE-L--TGLKVFGNEIKLEKPKGR   91 (91)
T ss_dssp             TTTTEEEEEESSHHHHHHHHH-G--GGEEETTEEEEEECCCCS
T ss_pred             CccEEeEEeeCCHHHHHHHHh-c--CCcEECCEEEEEEecCCC
Confidence            356789999999999999996 4  344799999999998753

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00072  Score=41.01  Aligned_cols=42  Identities=19%  Similarity=0.303  Sum_probs=35.2

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK   49 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~   49 (94)
                      .|..|||||.+.++|.+++. .  +.-.+.||+|.+..++.++..
T Consensus        49 ~~G~afV~F~s~~~a~~Al~-~--n~~~i~gr~i~V~~~~~~~~~   90 (103)
T d2cpya1          49 GLGQALVQFKNEDDARKSER-L--HRKKLNGREAFVHVVTLEDMR   90 (103)
T ss_dssp             CSSCEEEECSSHHHHHHHGG-G--CSEEETTEEEEEEEECHHHHH
T ss_pred             cCccEEEEECCHHHHHHHHh-c--CCCeECCcEEEEEECCHHHhh
Confidence            47799999999999999987 2  456899999999988766554

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00029  Score=42.96  Aligned_cols=39  Identities=21%  Similarity=0.247  Sum_probs=33.1

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |.-|||||++.++|..+++.+...  .+.|+++.++++..+
T Consensus        50 ~g~afV~f~~~~~a~~ai~~l~~~--~~~g~~i~V~~a~~~   88 (104)
T d1p1ta_          50 KGYGFCEYQDQETALSAMRNLNGR--EFSGRALRVDNAASE   88 (104)
T ss_dssp             EEEEEEECSCHHHHHHHHHHSSSB--SCSSSCBEEEETTCT
T ss_pred             CCceEEEECCHHHHHHHHHHcCCC--EECCEEEEEEECCCC
Confidence            346999999999999999887644  689999999998754

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00055  Score=40.49  Aligned_cols=39  Identities=13%  Similarity=0.147  Sum_probs=33.2

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      |.-|||||++.++|..++......  .+.|+++.++++..+
T Consensus        47 ~g~afV~f~~~~~a~~Ai~~l~~~--~~~g~~l~V~~a~~~   85 (90)
T d1x5sa1          47 RGFGFVTFENIDDAKDAMMAMNGK--SVDGRQIRVDQAGKS   85 (90)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHTTC--CTTSCCCEEEEEECC
T ss_pred             cceEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEEcCCC
Confidence            557999999999999999987654  689999999987644

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0012  Score=40.53  Aligned_cols=40  Identities=10%  Similarity=0.091  Sum_probs=32.8

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      +.|.-|||||++.++|.+++..   +.-.+.|++|.+.+...+
T Consensus        60 ~~kg~aFV~f~~~~~a~~al~~---~~~~l~G~~i~V~~a~~k   99 (103)
T d1x4ba1          60 RSRGFGFVTFSSMAEVDAAMAA---RPHSIDGRVVEPKRAVAR   99 (103)
T ss_dssp             SCCSEEEEECSSHHHHHHHHTS---CSEEETTEEEEEECCSSC
T ss_pred             CccCeEEEEECCHHHHHHHHHh---CCCeECCEEEEEEECccc
Confidence            4577899999999999998863   445789999999887654

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00031  Score=42.88  Aligned_cols=41  Identities=17%  Similarity=0.063  Sum_probs=34.2

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK   49 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~   49 (94)
                      |..|||||++.++|.++++.   +.-.|.||+|.+.+|+.++-.
T Consensus        55 ~G~afVeF~~~~~a~~Al~~---~~~~i~gR~I~V~~s~~~~~~   95 (102)
T d1weza_          55 TGEADVEFATHEDAVAAMAK---DKANMQHRYVELFLNSTAGTS   95 (102)
T ss_dssp             EEEEEEECSSSHHHHHHHTT---SSCCSSSSCCEEEEECCCCCC
T ss_pred             eEEEEEEECCHHHHHHHHHc---CCCEECCEEEEEEEcCCCCCC
Confidence            56899999999999998763   445899999999999977643

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00052  Score=40.51  Aligned_cols=39  Identities=10%  Similarity=0.124  Sum_probs=29.7

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS   43 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS   43 (94)
                      .|..|||||++.++|..+++.+......-+.+|+.+.|+
T Consensus        47 ~kg~afV~f~~~~~a~~Ai~~lng~~~~G~~~~i~V~~A   85 (85)
T d1fxla2          47 SRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA   85 (85)
T ss_dssp             EEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             CCCeeEEEEcCHHHHHHHHHHhCCCEeCCCCEEEEEEeC
Confidence            355799999999999999998875533223467888875

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.0011  Score=38.79  Aligned_cols=35  Identities=14%  Similarity=0.156  Sum_probs=30.0

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEe
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQF   42 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqy   42 (94)
                      |.-|||||++.|+|..++.-....  .+.||+|.+.+
T Consensus        51 ~G~afV~f~~~e~a~~Ai~~l~~~--~l~gr~i~v~l   85 (86)
T d2cqpa1          51 TGEAMVAFESRDEATAAVIDLNDR--PIGSRKVKLVL   85 (86)
T ss_dssp             EEEEEEEESCHHHHHHHHHHTTTC--EETTEECEEEE
T ss_pred             ceEEEEEEcCcHHHHHHHHHcCCC--EECCEEEEEEE
Confidence            457999999999999999887766  78999998864

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0014  Score=40.02  Aligned_cols=38  Identities=21%  Similarity=0.258  Sum_probs=31.6

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      .|.-|||||++.|+|..+++ ...  ..+.|+++.+++|+.
T Consensus        59 ~kG~afV~F~~~e~a~~A~~-l~g--~~~~G~~l~V~~a~~   96 (101)
T d2cq4a1          59 SKGIAYVEFCEIQSVPLAIG-LTG--QRLLGVPIIVQASQA   96 (101)
T ss_dssp             CCCCEEEEESCGGGHHHHHH-HTT--EEETTEEEEEEEHHH
T ss_pred             ccceEEEEECCHHHHHHHHH-HCC--CEECCEEEEEEECCC
Confidence            35679999999999999996 433  478999999999864

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.0014  Score=37.18  Aligned_cols=36  Identities=8%  Similarity=0.093  Sum_probs=29.1

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEe
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQF   42 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqy   42 (94)
                      +.+..|||||++.++|..+++ .  +.-.+.|+++.++.
T Consensus        39 ~~~~~afV~F~~~~~a~~al~-~--~~~~l~gr~i~V~~   74 (75)
T d2msta_          39 RHRGFGFVTFESEDIVEKVCE-I--HFHEINNKMVECKK   74 (75)
T ss_dssp             TSCCEEEEECSCHHHHHHHHH-C--SSCCBTTBCCEEEE
T ss_pred             ccCceeEEEECCHHHHHHHHh-c--CCCEECCeEEEEEE
Confidence            346789999999999999986 3  34578999998874

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0019  Score=38.12  Aligned_cols=36  Identities=14%  Similarity=0.179  Sum_probs=31.2

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN   44 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~   44 (94)
                      |+-|||||++.|+|.++++   .+...+.|+++-++++.
T Consensus        47 kG~afV~f~~~e~a~~al~---~~~~~~~g~~l~v~~~~   82 (85)
T d1zh5a2          47 KGSIFVVFDSIESAKKFVE---TPGQKYKETDLLILFKD   82 (85)
T ss_dssp             EEEEEEEESCHHHHHHHHT---CCCCEETTEECEEEEGG
T ss_pred             ceEEEEEEcCHHHHHHHHH---HCCCEECCEEEEEEEcC
Confidence            5689999999999999986   36678999999998764

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0015  Score=39.07  Aligned_cols=38  Identities=13%  Similarity=0.206  Sum_probs=31.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE   47 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e   47 (94)
                      |.-|||+|++.++|..+++.  .  -.+.|+++.+.++..++
T Consensus        50 rG~aFV~f~~~~~a~~al~~--~--~~l~Gr~i~v~~a~~k~   87 (90)
T d2cqga1          50 KGFGFVRFTEYETQVKVMSQ--R--HMIDGRWCDCKLPNSKQ   87 (90)
T ss_dssp             EEEEEEEESSHHHHHHHHHS--C--EEETTEEEEEECCCTTC
T ss_pred             CCEEEEEECCHHHHHHHHhc--C--CccCCEEeEEEeCCCCC
Confidence            56899999999999999873  2  27899999999987643

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0019  Score=37.60  Aligned_cols=33  Identities=21%  Similarity=0.159  Sum_probs=27.7

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEE
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYV   40 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyi   40 (94)
                      |.-|||||++.++|..++..+..  ..+.|+++.|
T Consensus        51 ~g~afV~f~~~~~A~~Ai~~l~g--~~~~gr~i~V   83 (83)
T d2cqca1          51 RGFAFVYFENVDDAKEAKERANG--MELDGRRIRV   83 (83)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTT--EEETTEEEEE
T ss_pred             ccceEEEECCHHHHHHHHHHcCC--CEECCEEeEC
Confidence            45799999999999999988764  4788998865

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.35  E-value=0.0011  Score=38.80  Aligned_cols=37  Identities=11%  Similarity=0.176  Sum_probs=29.5

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEe
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQF   42 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqy   42 (94)
                      |.-|||||++.++|..+++.+....+.-.++|+.++|
T Consensus        48 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~~   84 (85)
T d1b7fa2          48 RGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL   84 (85)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             ceeEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEEE
Confidence            4579999999999999999887654433448888876

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0028  Score=38.51  Aligned_cols=39  Identities=23%  Similarity=0.238  Sum_probs=32.8

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      .|.-|||+|++.++|..+++...   -.+.|+++.++++..+
T Consensus        51 ~kg~afV~f~~~~~A~~Ai~~~~---~~l~Gr~l~V~~a~~~   89 (103)
T d2cqda1          51 SRGYGFVTMADRAAAERACKDPN---PIIDGRKANVNLAYLG   89 (103)
T ss_dssp             CCSEEEEEESSHHHHHHHHTCSS---CEETTEECEEEESTTT
T ss_pred             cCCeEEEEECCHHHHHHHHHHCC---CcCCCEEEEEEEcCCC
Confidence            46789999999999999998753   2689999999987653

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0023  Score=39.09  Aligned_cols=41  Identities=12%  Similarity=0.190  Sum_probs=35.8

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      +..|||||++.++|.+++......  .+.||+|.+.|...+..
T Consensus        58 ~g~vfV~f~~~e~A~~A~~~l~Gr--~f~gR~v~v~f~~~~~y   98 (104)
T d1o0pa_          58 CGKIFVEFTSVFDCQKAMQGLTGR--KFANRVVVTKYCDPDSY   98 (104)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHSSC--CSSSSCCEEEEECHHHH
T ss_pred             ceEEEEEECCHHHHHHHHHHHCCC--EECCeEEEEEEcCHHHh
Confidence            457999999999999999998877  78999999999876543

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0041  Score=35.56  Aligned_cols=35  Identities=17%  Similarity=0.161  Sum_probs=28.7

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEe
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQF   42 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqy   42 (94)
                      .|..|||||++.|+|.++...   +.-.+.|+++.++.
T Consensus        43 ~~g~afV~f~~~e~~~~al~~---~~~~l~Gr~i~V~~   77 (79)
T d1l3ka2          43 KRGFAFVTFDDHDSVDKIVIQ---KYHTVNGHNCEVRK   77 (79)
T ss_dssp             EEEEEEEEESSHHHHHHHHHC---SCCEETTEECEEEE
T ss_pred             cccEEEEEEcCHHHHHHHHHh---CCCEECCEEEEEEE
Confidence            356799999999999999863   44589999998874

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.90  E-value=0.0025  Score=36.97  Aligned_cols=35  Identities=9%  Similarity=0.200  Sum_probs=29.4

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEe
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQF   42 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqy   42 (94)
                      .|.-|||+|++.++|.++++.   ++-.+.||++.++.
T Consensus        41 ~kG~aFV~f~~~~~a~~al~~---~~~~i~Gr~i~V~~   75 (77)
T d1uawa_          41 SRGFGFVTFMDQAGVDKVLAQ---SRHELDSKTIDPKV   75 (77)
T ss_dssp             CSSEEEECCCCTTHHHHHHHT---TTCCCSSCCCEEEE
T ss_pred             ccceEEEEECCHHHHHHHHHc---CCCEECCeEEEEEE
Confidence            467899999999999999973   56688999988764

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.81  E-value=0.0031  Score=38.15  Aligned_cols=40  Identities=5%  Similarity=0.021  Sum_probs=33.8

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK   46 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~   46 (94)
                      .|+-|||+|++.++|..+++-+...  .++|+++.+.|.+.+
T Consensus        49 ~~g~afV~f~~~~~a~~Ai~~lng~--~~~g~~i~v~~~~~~   88 (98)
T d1wg4a_          49 KDGMGMVEYLRKEDMEYALRKLDDT--KFRSHEGETSYIRVY   88 (98)
T ss_dssp             TTTEEEEEESSHHHHHHHHHHHSSE--EEECTTSCEEEEEEE
T ss_pred             ccceEEEEECCHHHHHHHHHHhCCC--EeCCeEEEEEEEecC
Confidence            4678999999999999999876644  889999999887544

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.80  E-value=0.0086  Score=35.34  Aligned_cols=33  Identities=12%  Similarity=0.196  Sum_probs=27.9

Q ss_pred             ceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEE
Q psy9170           7 IQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQ   41 (94)
Q Consensus         7 nQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiq   41 (94)
                      .-|||+|++.++|..++......  .+.|+++.+.
T Consensus        57 g~aFV~f~~~~~A~~Ai~~lng~--~~~gr~lkvS   89 (89)
T d2cpia1          57 ASAYVTYIRSEDALRAIQCVNNV--VVDGRTLKAS   89 (89)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTE--EETTEEEEEE
T ss_pred             eEEEEecccchhHHHHHHHhCCC--EECCEEEEEC
Confidence            46999999999999999887655  7899988763

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0022  Score=36.20  Aligned_cols=32  Identities=16%  Similarity=0.185  Sum_probs=25.3

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeE
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRA   37 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~   37 (94)
                      +.|..|||||++.++|..+++.....  .+.|+.
T Consensus        38 ~~~g~afV~f~~~~~A~~Ai~~lng~--~~~Gr~   69 (72)
T d1x4ea1          38 KCKGYGFVDFDSPSAAQKAVTALKAS--GVQAQM   69 (72)
T ss_dssp             SCCSEEEEEESCHHHHHHHHHHHHHH--TCCEES
T ss_pred             cccceeEEEECCHHHHHHHHHHhCCC--EECCEE
Confidence            35678999999999999999987755  355554

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.005  Score=35.24  Aligned_cols=34  Identities=9%  Similarity=0.143  Sum_probs=27.5

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEE
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQ   41 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiq   41 (94)
                      .|.-|||||++.++|..+++.   +.-.+.|+++.+.
T Consensus        40 ~kg~afV~f~~~~~a~~Al~~---~~~~l~Gr~i~V~   73 (75)
T d1hd0a_          40 SRGFGFVLFKESESVDKVMDQ---KEHKLNGKVIDPK   73 (75)
T ss_dssp             CCSEEEEEESSHHHHHHHHHT---CCCCBTTBCCEEC
T ss_pred             cCceEEEEECCHHHHHHHHhc---CCCEECCCEEEee
Confidence            467899999999999999974   3347899988763

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0051  Score=37.46  Aligned_cols=27  Identities=4%  Similarity=-0.064  Sum_probs=23.8

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhcc
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTC   29 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~   29 (94)
                      .++|+.|||||++.|+|..++......
T Consensus        53 ~~~k~~aFV~f~~~e~A~~A~~~lng~   79 (101)
T d2cq2a1          53 PPNKPYSFARYRTTEESKRAYVTLNGK   79 (101)
T ss_dssp             CTTCSCEEEEESSHHHHHHHHHHTTTC
T ss_pred             ccCccEEEEEECCHHHHHHHHHHhCCC
Confidence            567899999999999999999987754

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.73  E-value=0.0086  Score=34.68  Aligned_cols=36  Identities=6%  Similarity=0.084  Sum_probs=30.4

Q ss_pred             CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      ++||++|.  |.|.-+.+|.|-|+.+|+.||.+.-|-+
T Consensus         5 ~pP~~tl~--V~nLp~~~t~~~l~~~f~~~G~i~~v~~   40 (83)
T d2b0ga1           5 QPPNQILF--LTNLPEETNEMMLSMLFNQFPGFKEVRL   40 (83)
T ss_dssp             CSCCSEEE--EESCCTTCCHHHHHHHHTTSTTEEEEEE
T ss_pred             CCCCCEEE--EECCCCCCCHHHHHhhhccCccEEEeee
Confidence            45788866  8899999999999999999998776644

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0035  Score=36.84  Aligned_cols=39  Identities=8%  Similarity=0.080  Sum_probs=31.8

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      .++.|||||++.++|..++.-+...  .+.|+++.+.+.+.
T Consensus        34 ~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~i~v~~~~~   72 (87)
T d3begb1          34 RDGTGVVEFVRKEDMTYAVRKLDNT--KFRSHEGETAYIRV   72 (87)
T ss_dssp             TTSEEEEEESSHHHHHHHHHHHTTC--BCCCTTSCCCBCEE
T ss_pred             ccceeeEEeCCHHHHHHHHHHhCCC--EECCcEeEEeEEec
Confidence            4578999999999999999887655  57888888777643

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0056  Score=36.86  Aligned_cols=35  Identities=11%  Similarity=-0.080  Sum_probs=28.4

Q ss_pred             CcEEEEEEcccCCceeHhHHHhhhccccceEEEEEE
Q psy9170          57 ALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCVL   92 (94)
Q Consensus        57 n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~~   92 (94)
                      |.+|.|.=.||. .+|.|-|+.+|++||.++-|.++
T Consensus         2 ~~~l~V~nL~p~-~~te~~L~~~F~~fG~I~~v~i~   36 (109)
T d2adca1           2 NSVLLVSNLNPE-RVTPQSLFILFGVYGDVQRVKIL   36 (109)
T ss_dssp             CSEEEEESCCTT-TCCHHHHHHHHHHHTCEEEEEEC
T ss_pred             CCEEEEeCCCcc-cCCHHHHHHHHhhccccceEEEE
Confidence            568887666554 49999999999999988887664

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0068  Score=38.97  Aligned_cols=38  Identities=16%  Similarity=0.156  Sum_probs=30.6

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH   45 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~   45 (94)
                      .|+.|||+|++.++|.+++.- .  .-.+.|+++.+.++..
T Consensus       138 ~~g~~fV~f~~~e~A~~Al~~-~--~~~~~G~~i~V~~A~~  175 (183)
T d1u1qa_         138 KRGFAFVTFDDHDSVDKIVIQ-K--YHTVNGHNCEVRKALS  175 (183)
T ss_dssp             EEEEEEEEESCHHHHHHHHTS-S--CEEETTEEEEEEECCC
T ss_pred             cceeEEEEECCHHHHHHHHHh-C--CCeECCEEEEEEecCC
Confidence            356899999999999999863 2  2368999999988753

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0019  Score=39.14  Aligned_cols=35  Identities=9%  Similarity=0.007  Sum_probs=27.5

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEe
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQF   42 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqy   42 (94)
                      +.-|||||++.++|..+++.+...  .++|+|+.+..
T Consensus        59 ~g~afV~f~~~~~A~~Ai~~lng~--~i~gr~~~v~~   93 (101)
T d1x5oa1          59 RGVGFARMESTEKCEAVIGHFNGK--FIKTPPGVSAP   93 (101)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHBTC--CCCCCTTSCCC
T ss_pred             ccceeEEeCCHHHHHHHHHHhCCC--EECCcCCccCC
Confidence            557999999999999999877654  56777766543

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.017  Score=33.55  Aligned_cols=35  Identities=14%  Similarity=0.074  Sum_probs=28.7

Q ss_pred             CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEe
Q psy9170           5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQF   42 (94)
Q Consensus         5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqy   42 (94)
                      .|+-|||+|.+.++|..+++.   +.-.+.|+++.+.-
T Consensus        47 ~kG~afV~f~~~~~a~~ai~~---~~~~i~Gr~i~V~~   81 (84)
T d1l3ka1          47 SRGFGFVTYATVEEVDAAMNA---RPHKVDGRVVEPKR   81 (84)
T ss_dssp             EEEEEEEEESSHHHHHHHHHT---CSCEETTEECEEEE
T ss_pred             cccEEEEEEcCHHHHHHHHHh---CCCEECCEEEEEEe
Confidence            367899999999999999873   34478999998854

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.0052  Score=37.74  Aligned_cols=40  Identities=15%  Similarity=0.174  Sum_probs=32.3

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL   48 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL   48 (94)
                      +..|||||.+.++|.++...   +.-.|.||+|.+..+..++.
T Consensus        60 ~G~afVeF~~~e~a~~al~~---~~~~i~gR~i~V~~~~~~~~   99 (112)
T d1wela1          60 TGEGFVEFRNEADYKAALCR---HKQYMGNRFIQVHPITKKGM   99 (112)
T ss_dssp             EEEEEEEBSSSHHHHHHHTS---CSBCSTTSCBEEEEECHHHH
T ss_pred             eeEEEEEECCHHHHHHHHHc---CCCcCCCEEEEEEEcChHHH
Confidence            56799999999999988863   34479999999988776543

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.038  Score=31.94  Aligned_cols=34  Identities=12%  Similarity=0.062  Sum_probs=27.9

Q ss_pred             CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEE
Q psy9170          54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIV   89 (94)
Q Consensus        54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v   89 (94)
                      .+|+++|.  |.|.-+.+|-|-|+.+|++||.+..+
T Consensus         7 ~pPs~tL~--V~NLp~~~te~~l~~~F~~~G~v~~~   40 (88)
T d2adca2           7 FPPSATLH--LSNIPPSVSEEDLKVLFSSNGGVVKG   40 (88)
T ss_dssp             CCSCSEEE--EECCCTTCCHHHHHHHHHTTSCCEEE
T ss_pred             CCCCCEEE--EECCCCCCCHHHHHHHhhccCCEEEE
Confidence            35688865  56999999999999999999965443

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.81  E-value=0.003  Score=37.19  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=27.7

Q ss_pred             CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEE
Q psy9170           4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQ   41 (94)
Q Consensus         4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiq   41 (94)
                      +.|..|||||++.|+|..+++ .  +...+.|+++.|+
T Consensus        46 ~~kg~afV~f~~~e~a~~a~~-l--~g~~~~Gr~l~V~   80 (90)
T d1u2fa_          46 QDKNFAFLEFRSVDETTQAMA-F--DGIIFQGQSLKIR   80 (90)
T ss_dssp             TTTTEEEEEESSCTTTTTGGG-G--SSCCSSSSCCCCB
T ss_pred             CCceEEEEEeCCHHHHHHHHh-h--CCcEECCEEEEEC
Confidence            457889999999999988765 3  3446789988884

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.025  Score=34.20  Aligned_cols=37  Identities=11%  Similarity=0.050  Sum_probs=31.3

Q ss_pred             CCCCCcEEEEEEcccCCceeHhHHHhhhccccceEEE
Q psy9170          53 THSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIV   89 (94)
Q Consensus        53 s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v   89 (94)
                      +..|++.|.+...|.-+.+|-|-|..+|++||.+.-+
T Consensus        14 ~~~pt~~l~V~ng~L~~~vte~~L~~~F~~~G~i~~i   50 (101)
T d2cq2a1          14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDAL   50 (101)
T ss_dssp             CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEE
T ss_pred             CCCCCceEEEECCCCCCCCCHHHHHHHHHhhCcccEE
Confidence            4567888887777899999999999999999977654

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.075  Score=30.63  Aligned_cols=36  Identities=11%  Similarity=0.053  Sum_probs=30.4

Q ss_pred             CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      ..|+++|.+  .|.-+.+|.|-|..+|++||.+.-|-+
T Consensus         5 ~~Ps~~l~V--~nLp~~~t~~~L~~~f~~~G~i~~v~~   40 (88)
T d2cq1a1           5 GAPSRVLHI--RKLPGEVTETEVIALGLPFGKVTNILM   40 (88)
T ss_dssp             SSCCSEEEE--ESCCTTCCHHHHHHTTTTTSCEEEEEE
T ss_pred             CCCCCEEEE--eCCCCCCCHHHHHHHHhcccccccccc
Confidence            567888875  898899999999999999998776654

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.026  Score=32.29  Aligned_cols=33  Identities=6%  Similarity=0.045  Sum_probs=26.2

Q ss_pred             CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEE
Q psy9170           6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQ   41 (94)
Q Consensus         6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiq   41 (94)
                      |.-|||||++.++|.++++.   ..-.+.|+++-+.
T Consensus        41 rG~~FV~f~~~~~a~~al~~---~~~~i~g~~i~vk   73 (75)
T d1x0fa1          41 RGFCFITFKEEEPVKKIMEK---KYHNVGLSKCEIK   73 (75)
T ss_dssp             TCCEEEEESSSHHHHHHTTC---SSCCBTTBCCEEE
T ss_pred             ccEEEEEECCHHHHHHHHhh---CCCEECCEEeEEE
Confidence            45699999999999999864   3447888887664

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.98  E-value=0.065  Score=31.21  Aligned_cols=38  Identities=5%  Similarity=-0.102  Sum_probs=28.1

Q ss_pred             CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeE-EEEEec
Q psy9170           3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRA-VYVQFS   43 (94)
Q Consensus         3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~-vyiqyS   43 (94)
                      ++.|+-|||+|++.++|..+++.   +-..+.|+. +-+.-.
T Consensus        36 ~~~~~~~fV~f~~~~~A~~Al~~---nG~~~~g~~~vgV~~~   74 (81)
T d1wwha1          36 SNTGNWMHIRYQSKLQARKALSK---DGRIFGESIMIGVKPC   74 (81)
T ss_dssp             CSSSSEEEEEESSHHHHHHHHTT---TTCEETTTEECEEEEC
T ss_pred             cCCCCEEEEEEcccHHHHHHHhc---CCCeECCcEEEEEEeC
Confidence            56789999999999999999973   334677763 444433

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.03  E-value=0.15  Score=30.23  Aligned_cols=36  Identities=8%  Similarity=-0.011  Sum_probs=29.1

Q ss_pred             CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      ..|+++|.  |.|.-..+|-|-|..+|++||.+.-+-+
T Consensus        12 ~~ps~~l~--v~nlp~~~te~~l~~~F~~fG~I~~~~~   47 (104)
T d1wexa_          12 VSVSPVVH--VRGLCESVVEADLVEALEKFGTICYVMM   47 (104)
T ss_dssp             CCCCSEEE--EESCCSSCCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCCCEEE--EeCCCCCCCHHHHHHhhhhcccceEEEE
Confidence            35788888  5588888999999999999997765543

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.26  E-value=0.12  Score=29.29  Aligned_cols=30  Identities=10%  Similarity=-0.201  Sum_probs=22.2

Q ss_pred             CCcEEEEEEcccCCceeHhHHHhhhccccceEEE
Q psy9170          56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIV   89 (94)
Q Consensus        56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v   89 (94)
                      +++-|-+  .|  +|+|-|-|..+|++||.+.-+
T Consensus         4 ~~~ti~V--~~--~~~te~~L~~~F~~~G~I~~v   33 (79)
T d2bz2a1           4 KGNTLYV--YG--EDMTPTLLRGAFSPFGNIIDL   33 (79)
T ss_dssp             CCCEEEE--EC--SSCCHHHHHHHHSTTCCCSCE
T ss_pred             CCCEEEE--EC--CCCCHHHHHHHHhccCcccee
Confidence            3444444  36  489999999999999976544

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.53  E-value=0.1  Score=31.66  Aligned_cols=43  Identities=12%  Similarity=0.052  Sum_probs=33.9

Q ss_pred             CCCCCceEEEEecCH-HHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170           2 YDYDEIQAFLEMADE-CAASTMVTYFTTCVAQLRGRAVYVQFSN   44 (94)
Q Consensus         2 ~~~~KnQAfvEm~d~-e~A~~~v~~~~~~p~~irg~~vyiqyS~   44 (94)
                      +.+.|.-|||+|++. ++|..++.......+.+++..+.+...+
T Consensus        43 i~~~kg~gfV~F~~~~~~A~~a~~~~~~~~l~~~~~~v~~~~~~   86 (113)
T d1owxa_          43 FVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE   86 (113)
T ss_dssp             CCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred             EecCCceEEEEecCcHHHHHHHHHHhcCCceecCceEEEEeecc
Confidence            357788999999995 7788888888777777788777777654

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.51  E-value=0.15  Score=30.15  Aligned_cols=37  Identities=5%  Similarity=0.025  Sum_probs=29.3

Q ss_pred             CCCCcEEEEEEcccCCc-eeHhHHHhhhccccceEEEEEE
Q psy9170          54 HSNALLLHLTIGIILRP-ATHYQVHLIRSACQVYLIVCVL   92 (94)
Q Consensus        54 ~~~n~ILL~TI~n~~yp-Itvdvlh~i~s~~g~~~~v~~~   92 (94)
                      ..++++|.  |.|.-+. +|-|-|..+|++||.+.-|.++
T Consensus        15 ~~~~~~l~--v~nLp~~~~te~~l~~~F~~fG~V~~v~~~   52 (99)
T d1x4fa1          15 QELGRVIH--LSNLPHSGYSDSAVLKLAEPYGKIKNYILM   52 (99)
T ss_dssp             SCCCCEEE--EESCCCSSCCSHHHHTTTTTTSCCSEEEEE
T ss_pred             CCCCCEEE--EeCCcCCccCHHHHHhhhccccceeEEEEe
Confidence            45677766  7898886 8999999999999987766543

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.82  E-value=0.26  Score=29.30  Aligned_cols=34  Identities=12%  Similarity=-0.111  Sum_probs=27.3

Q ss_pred             CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEE
Q psy9170          54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIV   89 (94)
Q Consensus        54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v   89 (94)
                      +..|+.|.  |.|.-+.+|-|-|..+|+.||.++-|
T Consensus         4 p~~~r~l~--V~nLp~~~te~~l~~~F~~~G~v~~i   37 (114)
T d2f9da1           4 PEVNRILY--IRNLPYKITAEEMYDIFGKYGPIRQI   37 (114)
T ss_dssp             TTCCSEEE--EESCCTTCCHHHHHHHHHTTSCEEEE
T ss_pred             cCCCCEEE--EECCCCCCCHHHHHHHHhhcCCeEee
Confidence            34466654  67999999999999999999986554

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.44  E-value=0.27  Score=27.54  Aligned_cols=30  Identities=13%  Similarity=0.109  Sum_probs=25.5

Q ss_pred             EEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          62 LTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        62 ~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      +-|.|.-+.+|-|-|.+.|+.||.+.-|-+
T Consensus         3 v~V~nlp~~~t~~~l~~~F~~~G~I~~v~~   32 (75)
T d2ghpa2           3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDV   32 (75)
T ss_dssp             EEEEEECTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred             EEEECCCCCCCHHHHHHHHhcCCceEEEEE
Confidence            357899999999999999999998876543

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.60  E-value=0.32  Score=28.13  Aligned_cols=30  Identities=10%  Similarity=-0.039  Sum_probs=26.0

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIVCVL   92 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~~   92 (94)
                      =|.|.-+.+|-|-|+.+|++||.+.-|-+.
T Consensus        15 ~v~nLp~~~t~~~L~~~F~~~G~v~~v~~~   44 (93)
T d2cq3a1          15 HVSNIPFRFRDPDLRQMFGQFGKILDVEII   44 (93)
T ss_dssp             EEESCCTTCCHHHHHHHGGGTSCEEEEEEE
T ss_pred             EEECCCCCCCHHHHHHHHhhcceeeecccc
Confidence            478999999999999999999987766543

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.40  E-value=0.26  Score=29.75  Aligned_cols=33  Identities=12%  Similarity=-0.020  Sum_probs=28.3

Q ss_pred             EEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          59 LLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        59 ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      ++|.=|.|.-+.+|-|-|..+|++||.+.-|-+
T Consensus        11 ~~~~fvgnL~~~~tee~Lk~~F~~fG~V~~v~i   43 (113)
T d1owxa_          11 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF   43 (113)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC
T ss_pred             CeEEEECCCCCCCCHHHHHHHHHhcCChheEEE
Confidence            666678899999999999999999998766543

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.19  E-value=0.41  Score=27.25  Aligned_cols=31  Identities=16%  Similarity=0.001  Sum_probs=26.2

Q ss_pred             EEEcccCCceeHhHHHhhhccccceEEEEEE
Q psy9170          62 LTIGIILRPATHYQVHLIRSACQVYLIVCVL   92 (94)
Q Consensus        62 ~TI~n~~ypItvdvlh~i~s~~g~~~~v~~~   92 (94)
                      +=|.|.-+.+|-+-|...|+.||.+.-|-++
T Consensus         9 lfV~nlp~~~te~~l~~~F~~~G~i~~v~i~   39 (84)
T d1l3ka1           9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVM   39 (84)
T ss_dssp             EEEESCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred             EEEECCCCCCCHHHHHHHHHhhccccceeec
Confidence            4478999999999999999999987666543

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.67  E-value=0.45  Score=27.00  Aligned_cols=30  Identities=10%  Similarity=0.081  Sum_probs=25.7

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIVCVL   92 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~~   92 (94)
                      =|.|.-+.+|-|-|..+|++||.+.-|-++
T Consensus        10 fV~nLp~~~te~~L~~~F~~~G~v~~v~i~   39 (85)
T d1fxla2          10 YVSGLPKTMTQKELEQLFSQYGRIITSRIL   39 (85)
T ss_dssp             EEESCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHHhCCccccccc
Confidence            378998999999999999999987776554

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.14  E-value=0.45  Score=25.90  Aligned_cols=26  Identities=8%  Similarity=-0.064  Sum_probs=23.0

Q ss_pred             EcccCCceeHhHHHhhhccccceEEE
Q psy9170          64 IGIILRPATHYQVHLIRSACQVYLIV   89 (94)
Q Consensus        64 I~n~~ypItvdvlh~i~s~~g~~~~v   89 (94)
                      |.|.-+.+|-|-|..+|++||.+..+
T Consensus         3 V~nLp~~~te~~l~~~F~~~G~v~~~   28 (72)
T d1x4ea1           3 IRGLQPGTTDQDLVKLCQPYGKIVST   28 (72)
T ss_dssp             EESCCTTCCHHHHHTTSTTTSCEEEE
T ss_pred             EeCCCCcCCHHHHHHHHhhhcccccc
Confidence            67888999999999999999987654

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.09  E-value=0.47  Score=26.58  Aligned_cols=36  Identities=11%  Similarity=-0.105  Sum_probs=28.6

Q ss_pred             CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      +.|++.|  =|.|.-+.+|-+-|..+|++||.+.-|.+
T Consensus         6 p~~~~~l--~V~nL~~~~te~~l~~~F~~~G~i~~v~i   41 (83)
T d2cqca1           6 PDPNCCL--GVFGLSLYTTERDLREVFSKYGPIADVSI   41 (83)
T ss_dssp             CCGGGCE--EEESCCSSCCHHHHHHHHHTTSCEEEEEE
T ss_pred             CCCCCEE--EEeCCCCCCCHHHHHHHHHHhCCCccccc
Confidence            3455554  47899999999999999999998766544

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.86  E-value=0.51  Score=26.92  Aligned_cols=33  Identities=9%  Similarity=-0.009  Sum_probs=26.5

Q ss_pred             CcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          57 ALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        57 n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      +.+|  =|.|.-+.+|-|-|+.+|++||.+.-|-+
T Consensus         7 ~~~l--~V~nL~~~~t~~~l~~~F~~~G~i~~v~i   39 (88)
T d1rk8a_           7 GWIL--FVTSIHEEAQEDEIQEKFCDYGEIKNIHL   39 (88)
T ss_dssp             CEEE--EEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred             CCEE--EEeCCCCCCCHHHHHHHHHHcCCcccccc
Confidence            4454  47899999999999999999998765533

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.03  E-value=0.64  Score=27.14  Aligned_cols=27  Identities=4%  Similarity=-0.064  Sum_probs=23.7

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIV   89 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v   89 (94)
                      =|.|.-+.+|-+-|+.+|+.||.+.-+
T Consensus        22 fV~nLp~~~te~~L~~~F~~~G~i~~~   48 (101)
T d1x5oa1          22 YISNLPLSMDEQELENMLKPFGQVIST   48 (101)
T ss_dssp             EEESCCTTCCHHHHHHTTTTTSCEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHhhcccccce
Confidence            478999999999999999999976543

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.59  E-value=0.68  Score=26.38  Aligned_cols=30  Identities=0%  Similarity=-0.016  Sum_probs=25.8

Q ss_pred             EEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          62 LTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        62 ~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      +-|.|.-+.+|-+-|.++|+.||.+.-|-+
T Consensus        11 i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i   40 (90)
T d2cq0a1          11 IRVTNLSEDTRETDLQELFRPFGSISRIYL   40 (90)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTCCEEEEEE
T ss_pred             EEEECCCCCCCHHHHHHHHHHhcccccccc
Confidence            468899999999999999999998766544

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.36  E-value=0.17  Score=28.56  Aligned_cols=24  Identities=25%  Similarity=0.036  Sum_probs=21.3

Q ss_pred             EcccCCceeHhHHHhhhccccceE
Q psy9170          64 IGIILRPATHYQVHLIRSACQVYL   87 (94)
Q Consensus        64 I~n~~ypItvdvlh~i~s~~g~~~   87 (94)
                      |.|.-+.+|-|-|+.+|+.||.+.
T Consensus         3 V~nLp~~~te~~l~~~F~~~G~i~   26 (83)
T d1x5ta1           3 IGNLDPEIDEKLLYDTFSAFGVIL   26 (83)
T ss_dssp             EECCCTTCCHHHHHHHHHTTSCBS
T ss_pred             EcCCCCcCcHHHHHHHHHHhCcee
Confidence            678888999999999999999753

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.32  E-value=0.57  Score=27.02  Aligned_cols=29  Identities=3%  Similarity=-0.088  Sum_probs=25.6

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      =|.|.-+.+|-+-|.++|+.||.+..+.+
T Consensus        18 ~V~nLp~~~t~~~l~~~F~~~G~v~~~~~   46 (95)
T d1x4aa1          18 YVGNLPPDIRTKDIEDVFYKYGAIRDIDL   46 (95)
T ss_dssp             EEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred             EEECCCCCCCHHHHHHHHhcCCceEEEEe
Confidence            37899999999999999999998877654

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.24  E-value=0.62  Score=26.11  Aligned_cols=28  Identities=11%  Similarity=-0.060  Sum_probs=23.7

Q ss_pred             EcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          64 IGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        64 I~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus         3 V~nLp~~~t~~~l~~~F~~~G~v~~v~i   30 (85)
T d2cpfa1           3 IKNLNFSTTEETLKGVFSKVGAIKSCTI   30 (85)
T ss_dssp             EESCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred             EcCCCCCCCHHHHHHHHHHhCCccccce
Confidence            6788889999999999999998765543

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=82.85  E-value=0.73  Score=25.90  Aligned_cols=29  Identities=17%  Similarity=0.043  Sum_probs=24.8

Q ss_pred             EEEcccCCceeHhHHHhhhccccceEEEE
Q psy9170          62 LTIGIILRPATHYQVHLIRSACQVYLIVC   90 (94)
Q Consensus        62 ~TI~n~~ypItvdvlh~i~s~~g~~~~v~   90 (94)
                      +=|.|.-+.+|-|-|+.+|++||.+.-+-
T Consensus         9 lfV~nlp~~~te~~l~~~F~~~G~i~~~~   37 (85)
T d1b7fa2           9 LYVTNLPRTITDDQLDTIFGKYGSIVQKN   37 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHTSSSCEEEEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHhhCCEeeee
Confidence            45789999999999999999999876554

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.52  E-value=0.83  Score=26.67  Aligned_cols=30  Identities=3%  Similarity=-0.133  Sum_probs=26.8

Q ss_pred             EEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          62 LTIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        62 ~TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      +-|.|.-+.+|.+-|..+|+.||.+..+.+
T Consensus        18 i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i   47 (98)
T d1wg4a_          18 VLVSGLPPSGSWQDLKDHMREAGDVCYADV   47 (98)
T ss_dssp             EEEECCCSSCCHHHHHHHHTTSSCEEEEEE
T ss_pred             EEEECCCCCCCHHHHHHHHHhhcccccccc
Confidence            578999999999999999999998877654

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.14  E-value=0.73  Score=25.47  Aligned_cols=28  Identities=4%  Similarity=-0.082  Sum_probs=23.7

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIVC   90 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v~   90 (94)
                      =|.|.-+.+|-+-|..+|++||.+.-+-
T Consensus         6 ~V~nLp~~~te~~l~~~f~~~G~v~~v~   33 (82)
T d1fxla1           6 IVNYLPQNMTQEEFRSLFGSIGEIESCK   33 (82)
T ss_dssp             EEESCCTTCCHHHHHHHHHTTSCEEEEE
T ss_pred             EEECCCCCCCHHHHHHHHHHhCCccccc
Confidence            4788889999999999999999766543

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.71  E-value=0.84  Score=26.37  Aligned_cols=33  Identities=6%  Similarity=-0.103  Sum_probs=26.6

Q ss_pred             CCCcEEEEEEcccCCceeHhHHHhhhccccceEEE
Q psy9170          55 SNALLLHLTIGIILRPATHYQVHLIRSACQVYLIV   89 (94)
Q Consensus        55 ~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v   89 (94)
                      .|++.|.  |.|.-+.+|-|-|+++|++||.+.-+
T Consensus        15 ~Ps~tl~--V~nLp~~~t~~~l~~~f~~~G~i~~~   47 (97)
T d1whya_          15 NPTTRLW--VGGLGPNTSLAALAREFDRFGSIRTI   47 (97)
T ss_dssp             CCCSCEE--EECCCSSCCHHHHHHHHHTTSCEEEE
T ss_pred             CCCCEEE--EcCCCCCCCHHHHHHHHHhhcccceE
Confidence            4555554  77999999999999999999976544

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.34  E-value=0.88  Score=25.30  Aligned_cols=28  Identities=18%  Similarity=0.032  Sum_probs=23.7

Q ss_pred             EcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          64 IGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        64 I~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      |.|.-+.+|-|-|.++|++||.+.-|-+
T Consensus         5 V~nL~~~~te~~l~~~F~~~G~i~~v~i   32 (80)
T d1cvja1           5 VGDLHPDVTEAMLYEKFSPAGPILSIRV   32 (80)
T ss_dssp             EESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred             EeCCCCcCCHHHHHHHHHHhCCEeEEEE
Confidence            6788888999999999999998765544

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.03  E-value=0.87  Score=26.16  Aligned_cols=29  Identities=14%  Similarity=-0.029  Sum_probs=24.7

Q ss_pred             EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          63 TIGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      =|.|.-+-+|-|-|..+|++||.+.-|-+
T Consensus        11 fV~nlp~~~te~~l~~~F~~~G~i~~v~i   39 (93)
T d1h2vz_          11 YVGNLSFYTTEEQIYELFSKSGDIKKIIM   39 (93)
T ss_dssp             EEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHHHCCcceecc
Confidence            46788899999999999999998766654

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.65  E-value=0.93  Score=26.08  Aligned_cols=28  Identities=18%  Similarity=0.000  Sum_probs=24.6

Q ss_pred             EcccCCceeHhHHHhhhccccceEEEEE
Q psy9170          64 IGIILRPATHYQVHLIRSACQVYLIVCV   91 (94)
Q Consensus        64 I~n~~ypItvdvlh~i~s~~g~~~~v~~   91 (94)
                      |.|.-+.+|-|-|..+|++||.+.-|-+
T Consensus        13 V~nLp~~~te~~l~~~F~~~G~i~~v~i   40 (90)
T d2cqga1          13 VLGLPWKTTEQDLKEYFSTFGEVLMVQV   40 (90)
T ss_dssp             EESCCSSCCHHHHHHHHGGGSCEEEEEE
T ss_pred             EECCCCCCCHHHHHHHHHhhcccceeee
Confidence            8899999999999999999998766543

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.59  E-value=0.62  Score=27.12  Aligned_cols=29  Identities=14%  Similarity=-0.036  Sum_probs=24.5

Q ss_pred             EEEcccCCceeHhHHHhhhccccceEEEE
Q psy9170          62 LTIGIILRPATHYQVHLIRSACQVYLIVC   90 (94)
Q Consensus        62 ~TI~n~~ypItvdvlh~i~s~~g~~~~v~   90 (94)
                      +=|.|.-.-+|-+-|+.+|++||.+.-|-
T Consensus        21 l~v~nL~~~~te~~L~~~F~~fG~i~~v~   49 (96)
T d1x4ga1          21 VYCGGIASGLTDQLMRQTFSPFGQIMEIR   49 (96)
T ss_dssp             EEEECCSSCCCHHHHHHHHHHHSCEEEEE
T ss_pred             EEEcCCCCCCCHHHHHHHHHHhCCceEEE
Confidence            35788888899999999999999876554