Psyllid ID: psy9171

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MKDIGGNVKYTLVMVVQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRNRQSAALMMIIK
Secondary Structure (PSIPRED)
cccccccccEEEEEEEEEccccccccccccEEEEEccccccccHHHHHHHcccccEEEEEEEEccccEEEEEccHHHHHHHccEEEEEccEEEccEEEEEEEccccEEcccccEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEHHcccccccccccEEEEEEcccccccHHHHHHHcccccHHEEEEEEccccHHHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MKDIGGNVKYTLVMVVQAKldrqksdfkpsrvihirnipnevteAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRNRQSAALMMIIK
Flexible Loop (DISEMBL)
mkdiggnvkYTLVMVVQAKldrqksdfkpsrvihirnipnevtEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNqvslisgyrnrqsaaLMMIIK
Low Complexity Region (SEG)
MKDIGGNVKYTLVMVVQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQlllhleaeiihlGIPFGRVTNVLVLKGKNQVSLISGYRNRQSAALMMIIK
Disordered region (IsUnstruct)
*****GNVKYTLVMVVQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRNR**********
Disordered Region (DISOPRED)
********************************IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV***********A**MMIIK
Disordered Region (DISEMBL)
MKDIGGNVKYTLVMVVQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRNRQSAALMMIIK
Disordered Region (DISPRO)
******NVKYTLVMVVQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRNRQSAALMMIIK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKDIGGNVKYTLVMVVQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRNRQSAALMMIIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q66H20	531	Polypyrimidine tract-bind	yes	N/A	0.466	0.103	0.618	5e-14
Q91Z31	531	Polypyrimidine tract-bind	yes	N/A	0.466	0.103	0.618	5e-14
Q9UKA9	531	Polypyrimidine tract-bind	yes	N/A	0.466	0.103	0.618	6e-14
O95758	552	Polypyrimidine tract-bind	no	N/A	0.491	0.105	0.568	8e-14
Q9Z118	523	Polypyrimidine tract-bind	no	N/A	0.491	0.110	0.534	1e-12
P17225	527	Polypyrimidine tract-bind	no	N/A	0.406	0.091	0.604	1e-12
Q29099	557	Polypyrimidine tract-bind	no	N/A	0.406	0.086	0.625	1e-12
Q00438	555	Polypyrimidine tract-bind	no	N/A	0.406	0.086	0.604	1e-12
Q8WN55	531	Polypyrimidine tract-bind	no	N/A	0.406	0.090	0.625	2e-12
Q8BHD7	523	Polypyrimidine tract-bind	no	N/A	0.406	0.091	0.625	3e-12

>sp|Q66H20|PTBP2_RAT Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus GN=Ptbp2 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 41/55 (74%)

Query: 22  RQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
             K D  PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ  L L  E
Sbjct: 50  EDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATE 104

RNA-binding protein which binds to intronic polypyrimidine tracts and mediates negative regulation of exons splicing. May antagonize in a tissue-specific manner the ability of NOVA1 to activate exon selection. Beside its function in pre-mRNA splicing, plays also a role in the regulation of translation.
Rattus norvegicus (taxid: 10116)

>sp|Q91Z31|PTBP2_MOUSE Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 41/55 (74%)

Query: 22  RQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
             K D  PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ  L L  E
Sbjct: 50  EDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATE 104

RNA-binding protein which binds to intronic polypyrimidine tracts and mediates negative regulation of exons splicing. May antagonize in a tissue-specific manner the ability of NOVA1 to activate exon selection. Beside its function in pre-mRNA splicing, plays also a role in the regulation of translation.

Mus musculus (taxid: 10090)

>sp|Q9UKA9|PTBP2_HUMAN Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 41/55 (74%)

Query: 22  RQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
             K D  PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ  L L  E
Sbjct: 50  EDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATE 104

RNA-binding protein which binds to intronic polypyrimidine tracts and mediates negative regulation of exons splicing. May antagonize in a tissue-specific manner the ability of NOVA1 to activate exon selection. Beside its function in pre-mRNA splicing, plays also a role in the regulation of translation. Isoform 5 has a reduced affinity for RNA.

Homo sapiens (taxid: 9606)

>sp|O95758|PTBP3_HUMAN Polypyrimidine tract-binding protein 3 OS=Homo sapiens GN=PTBP3 PE=1 SV=2

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 19  KLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
           K  R +    PSRV+H+R IP +VTEAEII LG+PFG+VTN+L+LKGK+Q  L + +E
Sbjct: 47  KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASE 104

RNA-binding protein that mediates pre-mRNA alternative splicing regulation. Plays a role in the regulation of cell proliferation, differentiation and migration. Positive regulator of EPO-dependent erythropoiesis. Participates in cell differentiation regulation by repressing tissue-specific exons. Promotes FAS exon 6 skipping. Binds RNA, preferentially to both poly(G) and poly(U).

Homo sapiens (taxid: 9606)

>sp|Q9Z118|PTBP3_RAT Polypyrimidine tract-binding protein 3 OS=Rattus norvegicus GN=Ptbp3 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 19 KLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
          K    +    PSRV+H+R IP +VTEAE+I LG+PFG+VTN+L+LKGK+Q  L + +E
Sbjct: 18 KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASE 75

RNA-binding protein that mediates pre-mRNA alternative splicing regulation. Plays a role in the regulation of cell proliferation, differentiation and migration. Positive regulator of EPO-dependent erythropoiesis. Participates in cell differentiation regulation by repressing tissue-specific exons. Promotes Fas exon 6 skipping. Binds RNA, preferentially to both poly(G) and poly(U).

Rattus norvegicus (taxid: 10116)

>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1 PE=1 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 40/48 (83%)

Query: 29  PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
           PSRVIH+R +P++VTE E+I LG+PFG+VTN+L+LKGKNQ  + +  E
Sbjct: 56  PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTE 103

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10.

Mus musculus (taxid: 10090)

>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/48 (62%), Positives = 40/48 (83%)

Query: 29  PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
           PSRVIHIR +P++VTE E+I LG+PFG+VTN+L+LKGKNQ  + +  E
Sbjct: 57  PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTE 104

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10.

Sus scrofa (taxid: 9823)

>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus GN=Ptbp1 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 40/48 (83%)

Query: 29  PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
           PSRVIH+R +P++VTE E+I LG+PFG+VTN+L+LKGKNQ  + +  E
Sbjct: 56  PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTE 103

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10.

Rattus norvegicus (taxid: 10116)

>sp|Q8WN55|PTBP1_BOVIN Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/48 (62%), Positives = 39/48 (81%)

Query: 29  PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
           PSRVIHIR +P +VTE E+I LG+PFG+VTN+L+LKGKNQ  + +  E
Sbjct: 57  PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMHTE 104

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10.

Bos taurus (taxid: 9913)

>sp|Q8BHD7|PTBP3_MOUSE Polypyrimidine tract-binding protein 3 OS=Mus musculus GN=Ptbp3 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/48 (62%), Positives = 41/48 (85%)

Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
          PSRV+H+R IP +VTEAE+I LG+PFG+VTN+L+LKGK+Q  L + +E
Sbjct: 28 PSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASE 75

RNA-binding protein that mediates pre-mRNA alternative splicing regulation. Plays a role in the regulation of cell proliferation, differentiation and migration. Positive regulator of EPO-dependent erythropoiesis. Participates in cell differentiation regulation by repressing tissue-specific exons. Promotes Fas exon 6 skipping. Binds RNA, preferentially to both poly(G) and poly(U).

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
189241313	822	PREDICTED: similar to polypyrimidine tra	0.508	0.072	0.733	5e-18
270013160	876	hypothetical protein TcasGA2_TC011728 [T	0.508	0.068	0.733	5e-18
322802929	127	hypothetical protein SINV_06072 [Solenop	0.483	0.448	0.793	2e-17
328712478	613	PREDICTED: polypyrimidine tract-binding	0.491	0.094	0.745	4e-17
328712476	581	PREDICTED: polypyrimidine tract-binding	0.491	0.099	0.745	4e-17
328712480	632	PREDICTED: polypyrimidine tract-binding	0.491	0.091	0.745	5e-17
345496639	587	PREDICTED: polypyrimidine tract-binding	0.5	0.100	0.733	5e-17
321470924	540	hypothetical protein DAPPUDRAFT_302853 [	0.449	0.098	0.773	1e-16
383854458	196	PREDICTED: polypyrimidine tract-binding	0.423	0.255	0.823	3e-16
307694571	181	hephaestus [Biston betularia]	0.423	0.276	0.82	2e-15

>gi|189241313|ref|XP_966484.2| PREDICTED: similar to polypyrimidine tract binding protein [Tribolium castaneum]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/60 (73%), Positives = 51/60 (85%)

Query: 17  QAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
           + KLD+Q +  KPSRVIHIRNIPN+V+EAEI+HLGIPFGRVTNVLVLKGKNQ  L +  E
Sbjct: 288 KVKLDQQNNVGKPSRVIHIRNIPNDVSEAEIVHLGIPFGRVTNVLVLKGKNQAFLEMGEE 347

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013160|gb|EFA09608.1| hypothetical protein TcasGA2_TC011728 [Tribolium castaneum]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/60 (73%), Positives = 51/60 (85%)

Query: 17  QAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
           + KLD+Q +  KPSRVIHIRNIPN+V+EAEI+HLGIPFGRVTNVLVLKGKNQ  L +  E
Sbjct: 340 KVKLDQQNNVGKPSRVIHIRNIPNDVSEAEIVHLGIPFGRVTNVLVLKGKNQAFLEMGEE 399

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802929|gb|EFZ23070.1| hypothetical protein SINV_06072 [Solenopsis invicta]

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 50/58 (86%), Gaps = 1/58 (1%)

Query: 13 VMVVQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLL 70
           ++ Q KLD+  S  KPSRVIHIRNIPNEVTEAEIIHLG+PFGRVTNVLVLKGKNQ L
Sbjct: 35 FLLFQVKLDKSHSG-KPSRVIHIRNIPNEVTEAEIIHLGLPFGRVTNVLVLKGKNQYL 91

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712478|ref|XP_001947870.2| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 1 [Acyrthosiphon pisum]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 50/59 (84%), Gaps = 1/59 (1%)

Query: 19  KLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEI 77
           KLD+  ++ KPSRVIHIRNIPNEVTEAE+IHLGIPFG+VTNVLVLKGKNQ  L +  E 
Sbjct: 71  KLDKTANN-KPSRVIHIRNIPNEVTEAEVIHLGIPFGKVTNVLVLKGKNQAFLEMADET 128

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712476|ref|XP_003244820.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 2 [Acyrthosiphon pisum]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 50/59 (84%), Gaps = 1/59 (1%)

Query: 19 KLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEI 77
          KLD+  ++ KPSRVIHIRNIPNEVTEAE+IHLGIPFG+VTNVLVLKGKNQ  L +  E 
Sbjct: 39 KLDKTANN-KPSRVIHIRNIPNEVTEAEVIHLGIPFGKVTNVLVLKGKNQAFLEMADET 96

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712480|ref|XP_003244821.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 3 [Acyrthosiphon pisum]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 50/59 (84%), Gaps = 1/59 (1%)

Query: 19  KLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEI 77
           KLD+  ++ KPSRVIHIRNIPNEVTEAE+IHLGIPFG+VTNVLVLKGKNQ  L +  E 
Sbjct: 71  KLDKTANN-KPSRVIHIRNIPNEVTEAEVIHLGIPFGKVTNVLVLKGKNQAFLEMADET 128

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496639|ref|XP_001603240.2| PREDICTED: polypyrimidine tract-binding protein 1-like [Nasonia vitripennis]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/60 (73%), Positives = 51/60 (85%), Gaps = 1/60 (1%)

Query: 17  QAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
           +AKLD+ ++  KPSRVIHIRNIPNEV+E EIIHLG+PFGRVTNVLVLKGKNQ  L +  E
Sbjct: 62  KAKLDKSQNG-KPSRVIHIRNIPNEVSEGEIIHLGMPFGRVTNVLVLKGKNQAFLEMADE 120

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321470924|gb|EFX81898.1| hypothetical protein DAPPUDRAFT_302853 [Daphnia pulex]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 46/53 (86%)

Query: 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
          +S  KPSRV+HIRNIPN+VTEAEI+HLGIPFGRVTNVLVLKGKNQ  L +  E
Sbjct: 28 RSPAKPSRVVHIRNIPNDVTEAEIVHLGIPFGRVTNVLVLKGKNQAFLEMADE 80

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854458|ref|XP_003702738.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Megachile rotundata]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/51 (82%), Positives = 46/51 (90%), Gaps = 1/51 (1%)

Query: 19 KLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQL 69
          KLD+   + KPSRVIHIRNIPNEV+E EIIHLG+PFGRVTNVLVLKGKNQL
Sbjct: 49 KLDKSH-NGKPSRVIHIRNIPNEVSEGEIIHLGVPFGRVTNVLVLKGKNQL 98

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307694571|gb|ADN84938.1| hephaestus [Biston betularia]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/50 (82%), Positives = 43/50 (86%)

Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEI 77
          KPSRVIHIRNIPNE TEAEII LG+PFGRVTNVLVLKGKNQ  L +  EI
Sbjct: 9  KPSRVIHIRNIPNETTEAEIIQLGLPFGRVTNVLVLKGKNQAFLEMAEEI 58

Source: Biston betularia

Species: Biston betularia

Genus: Biston

Family: Geometridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
UNIPROTKB|F6Q0P6	236	PTBP2 "Uncharacterized protein	0.381	0.190	0.688	7.2e-15
UNIPROTKB|B4DI28	325	PTBP2 "cDNA FLJ55578, highly s	0.381	0.138	0.688	4.3e-14
UNIPROTKB|K7EKJ7	236	PTBP1 "Polypyrimidine tract-bi	0.338	0.169	0.725	6.2e-14
UNIPROTKB|K7ES59	209	PTBP1 "Polypyrimidine tract-bi	0.338	0.191	0.725	6.2e-14
UNIPROTKB|F1NRD6	532	PTBP2 "Uncharacterized protein	0.381	0.084	0.688	3.3e-13
UNIPROTKB|Q9UKA9	531	PTBP2 "Polypyrimidine tract-bi	0.381	0.084	0.688	4.2e-13
MGI|MGI:1860489	531	Ptbp2 "polypyrimidine tract bi	0.381	0.084	0.688	4.2e-13
RGD|1359267	531	Ptbp2 "polypyrimidine tract bi	0.381	0.084	0.688	4.2e-13
UNIPROTKB|E2RSK4	532	PTBP2 "Uncharacterized protein	0.381	0.084	0.688	4.2e-13
UNIPROTKB|B4DSS8	548	PTBP2 "Polypyrimidine tract-bi	0.381	0.082	0.688	4.7e-13

UNIPROTKB|F6Q0P6 PTBP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 170 (64.9 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
 Identities = 31/45 (68%), Positives = 38/45 (84%)

Query:    24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
             K D  PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct:    52 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 96

GO:2000177 "regulation of neural precursor cell proliferation" evidence=IEA

GO:0033119 "negative regulation of RNA splicing" evidence=IEA

GO:0006376 "mRNA splice site selection" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|B4DI28 PTBP2 "cDNA FLJ55578, highly similar to Polypyrimidine tract-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
 Identities = 31/45 (68%), Positives = 38/45 (84%)

Query:    24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
             K D  PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct:    21 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 65

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|K7EKJ7 PTBP1 "Polypyrimidine tract-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
 Identities = 29/40 (72%), Positives = 36/40 (90%)

Query:    29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
             PSRVIHIR +P +VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct:    57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQ 96

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|K7ES59 PTBP1 "Polypyrimidine tract-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
 Identities = 29/40 (72%), Positives = 36/40 (90%)

Query:    29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
             PSRVIHIR +P +VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct:    27 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQ 66

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1NRD6 PTBP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 171 (65.3 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
 Identities = 31/45 (68%), Positives = 38/45 (84%)

Query:    24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
             K D  PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct:    52 KMDGSPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 96

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006376 "mRNA splice site selection" evidence=IEA

GO:0033119 "negative regulation of RNA splicing" evidence=IEA

GO:2000177 "regulation of neural precursor cell proliferation" evidence=IEA

UNIPROTKB|Q9UKA9 PTBP2 "Polypyrimidine tract-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
 Identities = 31/45 (68%), Positives = 38/45 (84%)

Query:    24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
             K D  PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct:    52 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 96

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006376 "mRNA splice site selection" evidence=IEA

GO:2000177 "regulation of neural precursor cell proliferation" evidence=IEA

GO:0033119 "negative regulation of RNA splicing" evidence=IDA

MGI|MGI:1860489 Ptbp2 "polypyrimidine tract binding protein 2" [Mus musculus (taxid:10090)]

 Score = 170 (64.9 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
 Identities = 31/45 (68%), Positives = 38/45 (84%)

Query:    24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
             K D  PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct:    52 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 96

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0006376 "mRNA splice site selection" evidence=IMP;IDA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0033119 "negative regulation of RNA splicing" evidence=ISO

GO:2000177 "regulation of neural precursor cell proliferation" evidence=IMP

RGD|1359267 Ptbp2 "polypyrimidine tract binding protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 170 (64.9 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
 Identities = 31/45 (68%), Positives = 38/45 (84%)

Query:    24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
             K D  PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct:    52 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 96

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA;ISO

GO:0005681 "spliceosomal complex" evidence=IEA;ISO

GO:0006376 "mRNA splice site selection" evidence=IEA;ISO

GO:0033119 "negative regulation of RNA splicing" evidence=IEA;ISO

GO:2000177 "regulation of neural precursor cell proliferation" evidence=IEA;ISO

UNIPROTKB|E2RSK4 PTBP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 170 (64.9 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
 Identities = 31/45 (68%), Positives = 38/45 (84%)

Query:    24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
             K D  PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct:    52 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 96

GO:2000177 "regulation of neural precursor cell proliferation" evidence=IEA

GO:0033119 "negative regulation of RNA splicing" evidence=IEA

GO:0006376 "mRNA splice site selection" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|B4DSS8 PTBP2 "Polypyrimidine tract-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
 Identities = 31/45 (68%), Positives = 38/45 (84%)

Query:    24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
             K D  PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct:    63 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 107

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UKA9	PTBP2_HUMAN	No assigned EC number	0.6181	0.4661	0.1035	yes	N/A
Q66H20	PTBP2_RAT	No assigned EC number	0.6181	0.4661	0.1035	yes	N/A
Q91Z31	PTBP2_MOUSE	No assigned EC number	0.6181	0.4661	0.1035	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	118
cd12688	81	cd12688, RRM1_PTBP1_like, RNA recognition motif 1	2e-23
cd12779	90	cd12779, RRM1_ROD1, RNA recognition motif 1 in ver	2e-18
cd12778	82	cd12778, RRM1_PTBP2, RNA recognition motif 1 in ve	3e-17
cd12421	74	cd12421, RRM1_PTBP1_hnRNPL_like, RNA recognition m	4e-17
TIGR01649	481	TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus spl	6e-17
cd12777	81	cd12777, RRM1_PTBP1, RNA recognition motif 1 in ve	3e-16
cd12686	81	cd12686, RRM1_PTBPH1_PTBPH2, RNA recognition motif	7e-09
cd12685	76	cd12685, RRM_RBM20, RNA recognition motif of verte	6e-08
cd12687	75	cd12687, RRM1_PTBPH3, RNA recognition motif 1 in p	9e-08
cd12689	80	cd12689, RRM1_hnRNPL_like, RNA recognition motif 1	1e-06
cd12436	76	cd12436, RRM1_2_MATR3_like, RNA recognition motif	9e-06
cd12426	79	cd12426, RRM4_PTBPH3, RNA recognition motif 4 in p	5e-05
cd12685	76	cd12685, RRM_RBM20, RNA recognition motif of verte	4e-04
pfam14259	69	pfam14259, RRM_6, RNA recognition motif (a	0.001
smart00360	73	smart00360, RRM, RNA recognition motif	0.002
cd12354	73	cd12354, RRM3_TIA1_like, RNA recognition motif 2 i	0.002
cd12780	80	cd12780, RRM1_hnRNPL, RNA recognition motif 1 in v	0.003

>gnl|CDD|241132 cd12688, RRM1_PTBP1_like, RNA recognition motif 1 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins

 Score = 85.9 bits (213), Expect = 2e-23
 Identities = 33/46 (71%), Positives = 39/46 (84%)

Query: 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
          RV+HIRNIPN+ TEAEII LG+PFG+VTNVL+LKGKNQ  L +  E
Sbjct: 1  RVLHIRNIPNDATEAEIIALGLPFGKVTNVLMLKGKNQAFLEMADE 46

This subfamily corresponds to the RRM1 of polypyrimidine tract-binding protein 1 (PTB or hnRNP I), polypyrimidine tract-binding protein 2 (PTBP2 or nPTB), regulator of differentiation 1 (Rod1), and similar proteins found in Metazoa. PTB is an important negative regulator of alternative splicing in mammalian cells and functions at several aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTBP2 is highly homologous to PTB and is perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. PTBP2 also contains four RRMs. ROD1 coding protein Rod1 is a mammalian PTB homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein and negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It may play a role controlling differentiation in mammals. All members in this family contain four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 81

>gnl|CDD|241223 cd12779, RRM1_ROD1, RNA recognition motif 1 in vertebrate regulator of differentiation 1 (Rod1)

 Score = 73.2 bits (179), Expect = 2e-18
 Identities = 32/48 (66%), Positives = 42/48 (87%)

Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
          PSRV+H+R IPN+VTEAEII LG+PFG+VTN+L+LKGK+Q  L + +E
Sbjct: 4  PSRVLHLRKIPNDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASE 51

This subgroup corresponds to the RRM1 of ROD1 coding protein Rod1, a mammalian polypyrimidine tract binding protein (PTB) homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein that negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It might play a role controlling differentiation in mammals. Rod1 contains four repeats of RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain) and does have RNA binding activities. . Length = 90

>gnl|CDD|241222 cd12778, RRM1_PTBP2, RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein 2 (PTBP2)

 Score = 70.1 bits (171), Expect = 3e-17
 Identities = 31/47 (65%), Positives = 38/47 (80%)

Query: 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
          SRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ  L L  E
Sbjct: 1  SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATE 47

This subgroup corresponds to the RRM1 of PTBP2, also known as neural polypyrimidine tract-binding protein or neurally-enriched homolog of PTB (nPTB), highly homologous to polypyrimidine tract binding protein (PTB) and perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. PTBP2 contains four RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 82

>gnl|CDD|240867 cd12421, RRM1_PTBP1_hnRNPL_like, RNA recognition motif in polypyrimidine tract-binding protein 1 (PTB or hnRNP I), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), and similar proteins

 Score = 69.5 bits (171), Expect = 4e-17
 Identities = 24/43 (55%), Positives = 37/43 (86%)

Query: 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
          V+H+RN+P +VTE+++I L  PFG+VTNVL+L+GKNQ L+ ++
Sbjct: 1  VLHLRNLPPDVTESDLIALVSPFGKVTNVLLLRGKNQALVEMD 43

This subfamily corresponds to the RRM1 of the majority of family members that include polypyrimidine tract-binding protein 1 (PTB or hnRNP I), polypyrimidine tract-binding protein 2 (PTBP2 or nPTB), regulator of differentiation 1 (Rod1), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), polypyrimidine tract-binding protein homolog 3 (PTBPH3), polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2), and similar proteins. PTB is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTBP2 is highly homologous to PTB and is perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. Rod1 is a mammalian polypyrimidine tract binding protein (PTB) homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It might play a role controlling differentiation in mammals. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL protein plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. The family also includes polypyrimidine tract binding protein homolog 3 (PTBPH3) found in plant. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to other family members, all of which contain four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). Although their biological roles remain unclear, both PTBPH1 and PTBPH2 show significant sequence similarity to PTB. However, in contrast to PTB, they have three RRMs. In addition, this family also includes RNA-binding motif protein 20 (RBM20) that is an alternative splicing regulator associated with dilated cardiomyopathy (DCM) and contains only one RRM. . Length = 74

>gnl|CDD|233508 TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus splicing factor family

 Score = 74.5 bits (183), Expect = 6e-17
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEI 77
          PS V+H+RN+P +V EA+++   IPFG V+ V++L GK Q L+  E E 
Sbjct: 1  PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEE 49

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). Length = 481

>gnl|CDD|241221 cd12777, RRM1_PTBP1, RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein 1 (PTB)

 Score = 67.7 bits (165), Expect = 3e-16
 Identities = 30/46 (65%), Positives = 39/46 (84%)

Query: 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
          RVIH+R +PN+VTEAE+I LG+PFG+VTN+L+LKGKNQ  L +  E
Sbjct: 1  RVIHVRKLPNDVTEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTE 46

This subgroup corresponds to the RRM1 of PTB, also known as 58 kDa RNA-binding protein PPTB-1 or heterogeneous nuclear ribonucleoprotein I (hnRNP I), an important negative regulator of alternative splicing in mammalian cells. PTB also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTB contains four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). RRM1 and RRM2 are independent from each other and separated by flexible linkers. By contrast, there is an unusual and conserved interdomain interaction between RRM3 and RRM4. It is widely held that only RRMs 3 and 4 are involved in RNA binding and RRM2 mediates PTB homodimer formation. However, new evidence shows that the RRMs 1 and 2 also contribute substantially to RNA binding. Moreover, PTB may not always dimerize to repress splicing. It is a monomer in solution. . Length = 81

>gnl|CDD|241130 cd12686, RRM1_PTBPH1_PTBPH2, RNA recognition motif 1 in plant polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2)

 Score = 48.8 bits (116), Expect = 7e-09
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
          PS+V+H+RN+P E TE E+I L  PFG++ N     G N+
Sbjct: 1  PSKVLHLRNLPWECTEEELIELCKPFGKIVNTKCNVGANR 40

This subfamily corresponds to the RRM1 of PTBPH1 and PTBPH2. Although their biological roles remain unclear, PTBPH1 and PTBPH2 show significant sequence similarity to polypyrimidine tract binding protein (PTB) that is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. Both, PTBPH1 and PTBPH2, contain three RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 81

>gnl|CDD|241129 cd12685, RRM_RBM20, RNA recognition motif of vertebrate RNA-binding protein 20 (RBM20)

 Score = 46.2 bits (109), Expect = 6e-08
 Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 31 RVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHL 73
          RV+HI N+P    TE ++I+LG+PFG+VTN +++K  NQ  L +
Sbjct: 1  RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEM 44

This subfamily corresponds to the RRM of RBM20, an alternative splicing regulator associated with dilated cardiomyopathy (DCM). It contains only one copy of RNA-recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 76

>gnl|CDD|241131 cd12687, RRM1_PTBPH3, RNA recognition motif 1 in plant polypyrimidine tract-binding protein homolog 3 (PTBPH3)

 Score = 45.7 bits (108), Expect = 9e-08
 Identities = 18/44 (40%), Positives = 34/44 (77%)

Query: 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
          +V+H+RN+ +E++E +++ L  PFG VT +++L+ KNQ LL ++
Sbjct: 1  KVLHVRNVGHEISENDLLQLVQPFGVVTKLVMLRAKNQALLQMQ 44

This subfamily corresponds to the RRM1 of PTBPH3. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to polypyrimidine tract binding protein (PTB) that is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. Like PTB, PTBPH3 contains four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 75

>gnl|CDD|241133 cd12689, RRM1_hnRNPL_like, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein L (hnRNP-L) and similar proteins

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 17/46 (36%), Positives = 29/46 (63%)

Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
          PS V+H+R +P+ VTEA+++     FG ++ V ++  K Q L+  E
Sbjct: 1  PSPVVHVRGLPDGVTEADLVEALSEFGPISYVTMMPKKRQALVEFE 46

This subfamily corresponds to the RRM1 of heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), and similar proteins. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. It is closely related in domain structure and sequence to hnRNP-L, which contains three RNA-recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 80

>gnl|CDD|240882 cd12436, RRM1_2_MATR3_like, RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins

 Score = 40.3 bits (95), Expect = 9e-06
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 31 RVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
          RV+ + N+P    TEAE++ L  PFG+V + + L  +N+  + +E
Sbjct: 1  RVVRLSNLPEGGYTEAELLKLAEPFGKVDHYIFLPNRNKAFIEME 45

This subfamily corresponds to the RRM of the matrin 3 family of nuclear proteins consisting of Matrin 3 (MATR3), nuclear protein 220 (NP220) and similar proteins. MATR3 is a highly conserved inner nuclear matrix protein that has been implicated in various biological processes. NP220 is a large nucleoplasmic DNA-binding protein that binds to cytidine-rich sequences, such as CCCCC (G/C), in double-stranded DNA (dsDNA). Both, Matrin 3 and NP220, contain two RNA recognition motif (RRM), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a Cys2-His2 zinc finger-like motif at the C-terminal region. . Length = 76

>gnl|CDD|240872 cd12426, RRM4_PTBPH3, RNA recognition motif 4 in plant polypyrimidine tract-binding protein homolog 3 (PTBPH3)

 Score = 38.6 bits (90), Expect = 5e-05
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK--GKNQLLLHLEAE 76
          P+++IH+ N+P++VTE ++I+     G + NV V +  GK Q L+    E
Sbjct: 6  PTKMIHVSNLPSDVTEEDVINHLAEHGVIVNVKVFESNGKKQALVEFATE 55

This subfamily corresponds to the RRM4 of PTBPH3. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to polypyrimidine tract binding protein (PTB) that is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. Like PTB, PTBPH3 contains four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 79

>gnl|CDD|241129 cd12685, RRM_RBM20, RNA recognition motif of vertebrate RNA-binding protein 20 (RBM20)

 Score = 36.2 bits (83), Expect = 4e-04
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 74  EAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105
           E ++I+LG+PFG+VTN +++K  NQ  L   Y
Sbjct: 15  ENDVINLGLPFGKVTNYILMKSTNQAFLEMAY 46

This subfamily corresponds to the RRM of RBM20, an alternative splicing regulator associated with dilated cardiomyopathy (DCM). It contains only one copy of RNA-recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 76

>gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a

 Score = 34.8 bits (81), Expect = 0.001
 Identities = 11/35 (31%), Positives = 23/35 (65%)

Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKN 67
          +++RN+P  VTE ++     P+G+V  V +++ K+
Sbjct: 1  LYVRNLPPSVTEEDLREFFSPYGKVEGVRLVRNKD 35

k.a. RRM, RBD, or RNP domain). Length = 69

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 34.1 bits (79), Expect = 0.002
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKN 67
           + + N+P + TE E+  L   FG+V +V +++ K 
Sbjct: 1  TLFVGNLPPDTTEEELRELFSKFGKVESVRLVRDKE 36

Length = 73

>gnl|CDD|240800 cd12354, RRM3_TIA1_like, RNA recognition motif 2 in granule-associated RNA binding proteins (p40-TIA-1 and TIAR), and yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1

 Score = 34.1 bits (79), Expect = 0.002
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKN 67
          +++ N+P+ +TE E+     PFG +  V V K K 
Sbjct: 3  VYVGNLPHGLTEEELQRTFSPFGAIEEVRVFKDKG 37

This subfamily corresponds to the RRM3 of TIA-1, TIAR, and PUB1. Nucleolysin TIA-1 isoform p40 (p40-TIA-1 or TIA-1) and nucleolysin TIA-1-related protein (TIAR) are granule-associated RNA binding proteins involved in inducing apoptosis in cytotoxic lymphocyte (CTL) target cells. They share high sequence similarity and are expressed in a wide variety of cell types. TIA-1 can be phosphorylated by a serine/threonine kinase that is activated during Fas-mediated apoptosis.TIAR is mainly localized in the nucleus of hematopoietic and nonhematopoietic cells. It is translocated from the nucleus to the cytoplasm in response to exogenous triggers of apoptosis. Both TIA-1 and TIAR bind specifically to poly(A) but not to poly(C) homopolymers. They are composed of three N-terminal highly homologous RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a glutamine-rich C-terminal auxiliary domain containing a lysosome-targeting motif. TIA-1 and TIAR interact with RNAs containing short stretches of uridylates and their RRM2 can mediate the specific binding to uridylate-rich RNAs. The C-terminal auxiliary domain may be responsible for interacting with other proteins. In addition, TIA-1 and TIAR share a potential serine protease-cleavage site (Phe-Val-Arg) localized at the junction between their RNA binding domains and their C-terminal auxiliary domains. This subfamily also includes a yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1, termed ARS consensus-binding protein ACBP-60, or poly uridylate-binding protein, or poly(U)-binding protein, which has been identified as both a heterogeneous nuclear RNA-binding protein (hnRNP) and a cytoplasmic mRNA-binding protein (mRNP). It may be stably bound to a translationally inactive subpopulation of mRNAs within the cytoplasm. PUB1 is distributed in both, the nucleus and the cytoplasm, and binds to poly(A)+ RNA (mRNA or pre-mRNA). Although it is one of the major cellular proteins cross-linked by UV light to polyadenylated RNAs in vivo, PUB1 is nonessential for cell growth in yeast. PUB1 also binds to T-rich single stranded DNA (ssDNA); however, there is no strong evidence implicating PUB1 in the mechanism of DNA replication. PUB1 contains three RRMs, and a GAR motif (glycine and arginine rich stretch) that is located between RRM2 and RRM3. . Length = 73

>gnl|CDD|241224 cd12780, RRM1_hnRNPL, RNA recognition motif 1 in vertebrate heterogeneous nuclear ribonucleoprotein L (hnRNP-L)

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
           S V+H+R + + V EA+++     FG ++ V+V+  K Q L+  E
Sbjct: 1  ASPVVHVRGLIDGVVEADLVEALQEFGTISYVVVMPKKRQALVEFE 46

This subgroup corresponds to the RRM1 of hnRNP-L, a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-L shows significant sequence homology to polypyrimidine tract-binding protein (PTB or hnRNP I). Both, hnRNP-L and PTB, are localized in the nucleus but excluded from the nucleolus. hnRNP-L is an RNA-binding protein with three RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
KOG1190|consensus	492		99.81
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.78
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.69
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.65
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.62
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	99.61
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	99.61
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.59
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.53
KOG4206|consensus	221		99.5
KOG1190|consensus	492		99.48
smart00362	72	RRM_2 RNA recognition motif.	99.47
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.47
PLN03120	260	nucleic acid binding protein; Provisional	99.44
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	99.44
PLN03213	759	repressor of silencing 3; Provisional	99.42
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.41
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.41
KOG0125|consensus	376		99.41
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.39
COG0724	306	RNA-binding proteins (RRM domain) [General functio	99.39
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.38
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.38
KOG0126|consensus	219		99.37
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.37
KOG0109|consensus	346		99.37
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.35
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	99.35
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.33
KOG0114|consensus	124		99.33
smart00360	71	RRM RNA recognition motif.	99.33
KOG0107|consensus	195		99.3
KOG0148|consensus	321		99.29
PLN03121	243	nucleic acid binding protein; Provisional	99.29
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.28
KOG0108|consensus	435		99.25
KOG0111|consensus	298		99.25
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.2
KOG0109|consensus	346		99.19
KOG0117|consensus	506		99.18
KOG1456|consensus	494		99.16
KOG0113|consensus	335		99.15
KOG0127|consensus	678		99.15
KOG0105|consensus	241		99.15
KOG0415|consensus	479		99.14
KOG0127|consensus	678		99.11
KOG0149|consensus	247		99.1
KOG0131|consensus	203		99.07
KOG0122|consensus	270		99.07
KOG0145|consensus	360		99.01
KOG0148|consensus	321		98.96
KOG0117|consensus	506		98.94
KOG0130|consensus	170		98.93
KOG4207|consensus	256		98.9
KOG0123|consensus	369		98.81
KOG0147|consensus	549		98.79
KOG0121|consensus	153		98.79
KOG0110|consensus	725		98.78
KOG0116|consensus	419		98.77
KOG0153|consensus	377		98.77
KOG0132|consensus	894		98.77
KOG0124|consensus	544		98.77
smart00361	70	RRM_1 RNA recognition motif.	98.75
KOG4208|consensus	214		98.69
KOG0110|consensus	725		98.69
KOG0145|consensus	360		98.66
KOG4206|consensus	221		98.66
KOG0144|consensus	510		98.66
KOG0123|consensus	369		98.46
KOG0146|consensus	371		98.45
KOG4660|consensus	549		98.34
KOG0106|consensus	216		98.3
KOG0124|consensus	544		98.28
KOG0144|consensus	510		98.27
KOG4661|consensus	940		98.23
KOG4205|consensus	311		98.23
KOG4205|consensus	311		98.22
KOG0533|consensus	243		98.21
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	98.11
KOG0131|consensus	203		98.09
KOG4212|consensus	608		98.08
KOG1456|consensus	494		98.07
KOG0151|consensus	877		98.01
KOG1457|consensus	284		97.95
KOG4212|consensus	608		97.94
KOG4454|consensus	267		97.92
KOG4209|consensus	231		97.85
KOG1548|consensus	382		97.84
KOG0146|consensus	371		97.84
KOG0106|consensus	216		97.84
KOG1457|consensus	284		97.68
KOG4211|consensus	510		97.64
KOG0120|consensus	500		97.57
KOG4211|consensus	510		97.47
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	97.44
KOG1855|consensus	484		97.33
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	97.25
KOG3152|consensus	278		97.03
KOG1996|consensus	378		96.97
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	96.87
COG5175	480	MOT2 Transcriptional repressor [Transcription]	96.76
KOG4210|consensus	285		96.66
KOG0147|consensus	549		96.61
KOG0129|consensus	520		96.5
KOG4307|consensus	944		96.36
KOG1365|consensus	508		96.21
KOG0128|consensus	881		96.16
KOG4574|consensus	1007		96.04
KOG2416|consensus	718		95.94
PF08675	87	RNA_bind: RNA binding domain; InterPro: IPR014789	95.9
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	95.88
KOG1548|consensus	382		95.8
KOG0129|consensus	520		95.45
KOG1365|consensus	508		95.36
KOG4676|consensus	479		95.32
KOG0226|consensus	290		95.24
KOG4307|consensus	944		94.93
KOG1995|consensus	351		94.74
KOG2314|consensus	698		94.54
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	94.49
KOG0120|consensus	500		94.18
PF04847	184	Calcipressin: Calcipressin; InterPro: IPR006931 Ca	93.95
KOG2202|consensus	260		93.87
KOG2193|consensus	584		93.55
KOG0115|consensus	275		92.03
KOG4849|consensus	498		90.97
KOG2591|consensus	684		89.54
PF03467	176	Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120	89.31
PF15023	166	DUF4523: Protein of unknown function (DUF4523)	89.06
KOG0112|consensus	975		88.68
KOG0128|consensus	881		87.67
KOG0112|consensus	975		86.35

>KOG1190|consensus

Probab=99.81  E-value=1.2e-20  Score=158.58  Aligned_cols=91  Identities=40%  Similarity=0.554  Sum_probs=82.2

Q ss_pred             eeeeccCCCCCCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeC
Q psy9171          15 VVQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLK   94 (118)
Q Consensus        15 ~~~~~~~~~~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~   94 (118)
                      ..||+.+.. .+..||||||+||||+++||+||++|+.|||+|.+++++++++|||+||+|+++|..++.+|..-++.++
T Consensus        14 ~~kf~~~~~-~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr   92 (492)
T KOG1190|consen   14 SKKFKYTQR-SMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLR   92 (492)
T ss_pred             CCCcccccc-cccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccchhhhhhhcchhhhhheeecccccCcccc
Confidence            457777763 3447999999999999999999999999999999999999999999999999999999887777799999


Q ss_pred             CeeeEEEecccc
Q psy9171          95 GKNQVSLISGYR  106 (118)
Q Consensus        95 Gr~v~V~~S~~~  106 (118)
                      |++++++||.++
T Consensus        93 ~~~~yiq~sn~~  104 (492)
T KOG1190|consen   93 GQPIYIQYSNHS  104 (492)
T ss_pred             CcceeehhhhHH
Confidence            999999998653

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.78  E-value=4.5e-19  Score=149.79  Aligned_cols=78  Identities=32%  Similarity=0.482  Sum_probs=74.4

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      ||+||||+|||+++||+||.++|++||.|.++.++++|++|||||++.++|..|+..+..|+..+.|++|+|+||+++
T Consensus         1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~   78 (481)
T TIGR01649         1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ   78 (481)
T ss_pred             CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence            899999999999999999999999999999999999999999999999999999976667899999999999999764

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.69  E-value=1e-16  Score=127.77  Aligned_cols=76  Identities=17%  Similarity=0.157  Sum_probs=70.0

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      ++.+|||+|||+++++++|.++|++||.|.+++++.+      ||+|||+|++.++|.+|+..  +|+..+.||+|.|.|
T Consensus       268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~--lnG~~~~gr~i~V~~  345 (352)
T TIGR01661       268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILS--LNGYTLGNRVLQVSF  345 (352)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHH--hCCCEECCeEEEEEE
Confidence            3458999999999999999999999999999999853      89999999999999999865  899999999999999


Q ss_pred             cccc
Q psy9171         103 SGYR  106 (118)
Q Consensus       103 S~~~  106 (118)
                      ...+
T Consensus       346 ~~~~  349 (352)
T TIGR01661       346 KTNK  349 (352)
T ss_pred             ccCC
Confidence            9764

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.65  E-value=4.4e-16  Score=114.10  Aligned_cols=77  Identities=14%  Similarity=0.071  Sum_probs=70.1

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++..|||+|||+++||++|.++|++||.|.++.++.+      |++|||+|++.++|..|+..  +|+..|.|++|.|.
T Consensus        32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~--lng~~i~Gr~l~V~  109 (144)
T PLN03134         32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE--MDGKELNGRHIRVN  109 (144)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH--cCCCEECCEEEEEE
Confidence            45778999999999999999999999999999999843      79999999999999999854  88999999999999


Q ss_pred             ecccc
Q psy9171         102 ISGYR  106 (118)
Q Consensus       102 ~S~~~  106 (118)
                      +++.+
T Consensus       110 ~a~~~  114 (144)
T PLN03134        110 PANDR  114 (144)
T ss_pred             eCCcC
Confidence            98654

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.62  E-value=1.2e-15  Score=128.95  Aligned_cols=80  Identities=20%  Similarity=0.158  Sum_probs=73.9

Q ss_pred             CCCCcEEEeCCCCC-cccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          27 FKPSRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        27 ~~PS~vL~V~NLP~-~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      ++|+.+|||+|||+ .+|+++|.+||++||.|.++.++++ +|+|||+|.+.++|..|+.+  +|+..+.|++|+|.+|+
T Consensus       272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~--lng~~l~g~~l~v~~s~  349 (481)
T TIGR01649       272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTH--LNGVKLFGKPLRVCPSK  349 (481)
T ss_pred             CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHH--hCCCEECCceEEEEEcc
Confidence            57899999999998 6999999999999999999999875 69999999999999999965  89999999999999998


Q ss_pred             ccch
Q psy9171         105 YRNR  108 (118)
Q Consensus       105 ~~~~  108 (118)
                      ++++
T Consensus       350 ~~~~  353 (481)
T TIGR01649       350 QQNV  353 (481)
T ss_pred             cccc
Confidence            8654

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>PF00076 RRM_1: RNA recognition motif

Probab=99.61  E-value=1e-15  Score=95.20  Aligned_cols=65  Identities=22%  Similarity=0.306  Sum_probs=60.3

Q ss_pred             EEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      |||+|||+++|+++|.++|++||.|..+.+..+     ++.|||+|++.++|..|+..  +|+..+.|++|+
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~--l~g~~~~~~~ir   70 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEE--LNGKKINGRKIR   70 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHH--HTTEEETTEEEE
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHH--cCCCEECccCcC
Confidence            799999999999999999999999999999863     78999999999999999864  889999999885

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>PF14259 RRM_6: RNA recognition motif (a

Probab=99.61  E-value=1.8e-15  Score=95.72  Aligned_cols=65  Identities=20%  Similarity=0.220  Sum_probs=58.2

Q ss_pred             EEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      |||+|||+++|++||.++|++||.|.++.+...     +++|||+|.+.++|..|+..  .++..++||.|+
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~--~~~~~~~g~~l~   70 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALEL--LNGKEIDGRKLR   70 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHH--HTTEEETTEEEE
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHH--CCCcEECCEEcC
Confidence            799999999999999999999999999999875     69999999999999999865  568999999885

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.59  E-value=4.3e-15  Score=118.44  Aligned_cols=76  Identities=13%  Similarity=0.069  Sum_probs=69.3

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      |...|||+|||+++||+||.++|++||+|.++.++++      ||+|||+|.+.++|..|+..  +|+..+.|+++.|.|
T Consensus         2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~--l~g~~l~g~~i~v~~   79 (352)
T TIGR01661         2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNS--LNGLRLQNKTIKVSY   79 (352)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhh--cccEEECCeeEEEEe
Confidence            4568999999999999999999999999999999853      58999999999999999864  899999999999999


Q ss_pred             cccc
Q psy9171         103 SGYR  106 (118)
Q Consensus       103 S~~~  106 (118)
                      ++.+
T Consensus        80 a~~~   83 (352)
T TIGR01661        80 ARPS   83 (352)
T ss_pred             eccc
Confidence            8643

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.53  E-value=1.7e-14  Score=118.92  Aligned_cols=76  Identities=11%  Similarity=0.140  Sum_probs=69.5

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++.+|||+|||+++||++|.++|+.||.|..++++.+      |++|||||.++++|..|+..  +|+..+.|++|.|.
T Consensus       105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~--LnG~~l~gr~i~V~  182 (346)
T TIGR01659       105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKN--LNGITVRNKRLKVS  182 (346)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHH--cCCCccCCceeeee
Confidence            45778999999999999999999999999999999753      58999999999999999854  89999999999999


Q ss_pred             eccc
Q psy9171         102 ISGY  105 (118)
Q Consensus       102 ~S~~  105 (118)
                      |++.
T Consensus       183 ~a~p  186 (346)
T TIGR01659       183 YARP  186 (346)
T ss_pred             cccc
Confidence            9864

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>KOG4206|consensus

Probab=99.50  E-value=2.4e-14  Score=112.33  Aligned_cols=80  Identities=14%  Similarity=0.188  Sum_probs=73.3

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHH----hccCCCceeEEEEec---cCceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIH----LGIPFGRVTNVLVLK---GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ   98 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~----Lf~~fG~V~~v~l~~---~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v   98 (118)
                      +..|+.+|||+||++.+..++|..    ||++||+|+++...+   .||||||.|.+.++|..|+.  .+++..+-||++
T Consensus         5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r--~l~gfpFygK~m   82 (221)
T KOG4206|consen    5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALR--ALQGFPFYGKPM   82 (221)
T ss_pred             ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHH--HhcCCcccCchh
Confidence            457888999999999999999987    999999999999984   58999999999999999986  599999999999


Q ss_pred             EEEeccccc
Q psy9171          99 VSLISGYRN  107 (118)
Q Consensus        99 ~V~~S~~~~  107 (118)
                      +++||+..+
T Consensus        83 riqyA~s~s   91 (221)
T KOG4206|consen   83 RIQYAKSDS   91 (221)
T ss_pred             heecccCcc
Confidence            999998754

>KOG1190|consensus

Probab=99.48  E-value=7.9e-14  Score=117.71  Aligned_cols=102  Identities=22%  Similarity=0.207  Sum_probs=86.5

Q ss_pred             CCCCcceecchheeeeeccCCCC---CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEe--ccCceEEEeecch
Q psy9171           2 KDIGGNVKYTLVMVVQAKLDRQK---SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL--KGKNQLLLHLEAE   76 (118)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~--~~kgqAFVEm~~~   76 (118)
                      +|.|+|-||.++|+||||++.+.   +++|||.+||+.|+|++++|+||..+|.+-|...+.-..  +++.+|+++++++
T Consensus       383 ~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sv  462 (492)
T KOG1190|consen  383 EDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESV  462 (492)
T ss_pred             ccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCCh
Confidence            58999999999999999999876   688999999999999999999999999999887665544  3689999999999


Q ss_pred             hhhhcccccccccceee-CCeeeEEEeccc
Q psy9171          77 IIHLGIPFGRVTNVLVL-KGKNQVSLISGY  105 (118)
Q Consensus        77 e~A~~ai~~~~~n~~~i-~Gr~v~V~~S~~  105 (118)
                      |+|..|.-.  +..-.+ .+.-++|.||++
T Consensus       463 eeA~~ali~--~hnh~lgen~hlRvSFSks  490 (492)
T KOG1190|consen  463 EEAIQALID--LHNHYLGENHHLRVSFSKS  490 (492)
T ss_pred             hHhhhhccc--cccccCCCCceEEEEeecc
Confidence            999999643  333333 445899999986

>smart00362 RRM_2 RNA recognition motif

Probab=99.47  E-value=1.4e-13  Score=83.59  Aligned_cols=67  Identities=22%  Similarity=0.244  Sum_probs=61.1

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEeccC----ceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGK----NQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~k----gqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      .|||+|||+++++++|.++|++||.|.++.+...+    +.|||+|.+.++|..|+..  +++..+.|+++.+
T Consensus         1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~--~~~~~~~~~~i~v   71 (72)
T smart00362        1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEA--LNGTKLGGRPLRV   71 (72)
T ss_pred             CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHH--hCCcEECCEEEee
Confidence            48999999999999999999999999999998765    9999999999999999854  7789999999876

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.47  E-value=1.3e-13  Score=113.92  Aligned_cols=75  Identities=16%  Similarity=0.115  Sum_probs=69.1

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      +++++|||+|||+++|+++|.++|++||.|..+.++.      .+|+|||+|.+.++|..|+..  +|+..|.|++|.|.
T Consensus       184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~--l~g~~i~g~~i~v~  261 (457)
T TIGR01622       184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEV--MNGFELAGRPIKVG  261 (457)
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh--cCCcEECCEEEEEE
Confidence            5578999999999999999999999999999999984      368999999999999999854  88999999999999


Q ss_pred             ecc
Q psy9171         102 ISG  104 (118)
Q Consensus       102 ~S~  104 (118)
                      |+.
T Consensus       262 ~a~  264 (457)
T TIGR01622       262 YAQ  264 (457)
T ss_pred             Ecc
Confidence            975

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>PLN03120 nucleic acid binding protein; Provisional

Probab=99.44  E-value=2.5e-13  Score=108.92  Aligned_cols=72  Identities=10%  Similarity=0.020  Sum_probs=67.3

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc---CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG---KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~---kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      .++|||+|||+++||+||.++|+.||.|.++.+..+   +++|||+|+++++|..|+.   +|+..|.||+|.|..+.
T Consensus         4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All---LnG~~l~gr~V~Vt~a~   78 (260)
T PLN03120          4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL---LSGATIVDQSVTITPAE   78 (260)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH---hcCCeeCCceEEEEecc
Confidence            568999999999999999999999999999999864   6899999999999999983   89999999999999986

>PF13893 RRM_5: RNA recognition motif

Probab=99.44  E-value=2.3e-13  Score=83.69  Aligned_cols=55  Identities=15%  Similarity=0.082  Sum_probs=50.5

Q ss_pred             HHHhccCCCceeEEEEeccC-ceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          47 IIHLGIPFGRVTNVLVLKGK-NQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        47 L~~Lf~~fG~V~~v~l~~~k-gqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      |.++|++||+|.++.+.+.+ ++|||||++.++|..|+..  +|+..+.|++|.|.||
T Consensus         1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~--l~~~~~~g~~l~V~~a   56 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQ--LNGRQFNGRPLKVSYA   56 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHH--HTTSEETTEEEEEEEE
T ss_pred             ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHH--hCCCEECCcEEEEEEC
Confidence            67899999999999999887 9999999999999999865  8899999999999997

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>PLN03213 repressor of silencing 3; Provisional

Probab=99.42  E-value=2.5e-13  Score=117.38  Aligned_cols=78  Identities=14%  Similarity=0.137  Sum_probs=69.6

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec--cCceEEEeecch--hhhhcccccccccceeeCCeeeEEEec
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK--GKNQLLLHLEAE--IIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~--~kgqAFVEm~~~--e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      ...-.|||+||++++|++||..+|++||.|.++.+++  +||||||||.+.  +++..|+..  +|+..++||.|+|+-|
T Consensus         8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISa--LNGAEWKGR~LKVNKA   85 (759)
T PLN03213          8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFST--YNGCVWKGGRLRLEKA   85 (759)
T ss_pred             CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHH--hcCCeecCceeEEeec
Confidence            3445799999999999999999999999999999985  699999999987  678889854  9999999999999999


Q ss_pred             cccc
Q psy9171         104 GYRN  107 (118)
Q Consensus       104 ~~~~  107 (118)
                      +-..
T Consensus        86 KP~Y   89 (759)
T PLN03213         86 KEHY   89 (759)
T ss_pred             cHHH
Confidence            7543

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.41  E-value=4.5e-13  Score=110.77  Aligned_cols=75  Identities=13%  Similarity=0.137  Sum_probs=69.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.++.+      ||+|||||.+.++|..|+.   +|+..+.|++|.+.
T Consensus        87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~---l~g~~~~g~~i~v~  163 (457)
T TIGR01622        87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA---LTGQMLLGRPIIVQ  163 (457)
T ss_pred             cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH---hCCCEECCeeeEEe
Confidence            45789999999999999999999999999999999853      7999999999999999973   88999999999999


Q ss_pred             eccc
Q psy9171         102 ISGY  105 (118)
Q Consensus       102 ~S~~  105 (118)
                      ++..
T Consensus       164 ~~~~  167 (457)
T TIGR01622       164 SSQA  167 (457)
T ss_pred             ecch
Confidence            8764

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.41  E-value=5e-13  Score=111.70  Aligned_cols=76  Identities=16%  Similarity=0.044  Sum_probs=69.1

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      +.+.|||+|||+.+|+++|.++|++||.|..+.+++      .+|+|||||.+.++|..|+..  +|+..+.|++|.|.+
T Consensus       294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~--l~g~~~~~~~l~v~~  371 (509)
T TIGR01642       294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAA--LNGKDTGDNKLHVQR  371 (509)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH--cCCCEECCeEEEEEE
Confidence            457899999999999999999999999999999875      279999999999999999854  899999999999999


Q ss_pred             cccc
Q psy9171         103 SGYR  106 (118)
Q Consensus       103 S~~~  106 (118)
                      +...
T Consensus       372 a~~~  375 (509)
T TIGR01642       372 ACVG  375 (509)
T ss_pred             CccC
Confidence            8653

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0125|consensus

Probab=99.41  E-value=3.1e-13  Score=111.57  Aligned_cols=75  Identities=17%  Similarity=0.197  Sum_probs=68.1

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      -+-|||+|||....|.||..+|++||+|++|.++.    .||++||.|++.++|.+|=  -.+++..|.||+|.|+-++-
T Consensus        96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRAR--a~LHgt~VEGRkIEVn~ATa  173 (376)
T KOG0125|consen   96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRAR--AELHGTVVEGRKIEVNNATA  173 (376)
T ss_pred             CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHH--HHhhcceeeceEEEEeccch
Confidence            34599999999999999999999999999999984    3899999999999999993  24899999999999998876


Q ss_pred             c
Q psy9171         106 R  106 (118)
Q Consensus       106 ~  106 (118)
                      +
T Consensus       174 r  174 (376)
T KOG0125|consen  174 R  174 (376)
T ss_pred             h
Confidence            4

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.39  E-value=6.8e-13  Score=113.09  Aligned_cols=78  Identities=13%  Similarity=0.107  Sum_probs=70.8

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      ..+..|||+|||+++|+++|.++|++||.|.++.++.+     ||+|||+|.+.++|.+|+..  +|+..+.||+++|.+
T Consensus       283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~--~~g~~~~gk~l~V~~  360 (562)
T TIGR01628       283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTE--MHGRMLGGKPLYVAL  360 (562)
T ss_pred             cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHH--hcCCeeCCceeEEEe
Confidence            45678999999999999999999999999999999853     69999999999999999854  889999999999999


Q ss_pred             ccccc
Q psy9171         103 SGYRN  107 (118)
Q Consensus       103 S~~~~  107 (118)
                      +..+.
T Consensus       361 a~~k~  365 (562)
T TIGR01628       361 AQRKE  365 (562)
T ss_pred             ccCcH
Confidence            97643

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=99.39  E-value=9e-13  Score=95.90  Aligned_cols=73  Identities=21%  Similarity=0.238  Sum_probs=67.5

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      ..+|||+|||+++|+++|..+|.+||.|..+.+..+      +|+|||+|.+.++|..|+..  +++..+.||++.|..+
T Consensus       115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~--~~~~~~~~~~~~v~~~  192 (306)
T COG0724         115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEE--LNGKELEGRPLRVQKA  192 (306)
T ss_pred             CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHH--cCCCeECCceeEeecc
Confidence            589999999999999999999999999998888653      69999999999999999865  7899999999999997


Q ss_pred             c
Q psy9171         104 G  104 (118)
Q Consensus       104 ~  104 (118)
                      .
T Consensus       193 ~  193 (306)
T COG0724         193 Q  193 (306)
T ss_pred             c
Confidence            5

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.38  E-value=9e-13  Score=115.19  Aligned_cols=76  Identities=18%  Similarity=0.173  Sum_probs=69.4

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCC--CceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPF--GRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~f--G~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      ..+++|||+|||+++||++|.++|++|  |.|.++.++  +++|||||++.++|..|+..  +|+..|.|++|.|.+|+-
T Consensus       231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--rgfAFVeF~s~e~A~kAi~~--lnG~~i~Gr~I~V~~Akp  306 (578)
T TIGR01648       231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--RDYAFVHFEDREDAVKAMDE--LNGKELEGSEIEVTLAKP  306 (578)
T ss_pred             ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--cCeEEEEeCCHHHHHHHHHH--hCCCEECCEEEEEEEccC
Confidence            457899999999999999999999999  999999876  57999999999999999854  899999999999999976


Q ss_pred             cc
Q psy9171         106 RN  107 (118)
Q Consensus       106 ~~  107 (118)
                      ..
T Consensus       307 ~~  308 (578)
T TIGR01648       307 VD  308 (578)
T ss_pred             CC
Confidence            43

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.38  E-value=8.1e-13  Score=112.64  Aligned_cols=71  Identities=23%  Similarity=0.178  Sum_probs=65.6

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      .|||+|||+++||++|.++|++||.|.+++++++      +|+|||+|.+.++|..|+..  +|+..++||+++|.+|.
T Consensus         2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~--ln~~~i~gk~i~i~~s~   78 (562)
T TIGR01628         2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALET--MNFKRLGGKPIRIMWSQ   78 (562)
T ss_pred             eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH--hCCCEECCeeEEeeccc
Confidence            5999999999999999999999999999999853      57999999999999999854  78999999999999985

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>KOG0126|consensus

Probab=99.37  E-value=2.7e-13  Score=104.85  Aligned_cols=72  Identities=19%  Similarity=0.234  Sum_probs=66.9

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      .|--|||+|||++.||+||+.+|++||.|+++.++++      |||||+-++|.-+..-|+.+  +|++.|.||.|+|.-
T Consensus        34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN--~NGiki~gRtirVDH  111 (219)
T KOG0126|consen   34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDN--LNGIKILGRTIRVDH  111 (219)
T ss_pred             cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEec--cCCceecceeEEeee
Confidence            3567999999999999999999999999999999964      79999999999999999976  999999999999974

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.37  E-value=1.1e-12  Score=115.25  Aligned_cols=75  Identities=12%  Similarity=0.071  Sum_probs=69.4

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      +...|||+|||+++++++|.++|++||.|.++++.+      .||+|||+|++.++|..|+..  +|+..+.|+.|+|.+
T Consensus       203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a--mNg~elgGr~LrV~k  280 (612)
T TIGR01645       203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS--MNLFDLGGQYLRVGK  280 (612)
T ss_pred             ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH--hCCCeeCCeEEEEEe
Confidence            456899999999999999999999999999999985      279999999999999999965  999999999999999


Q ss_pred             ccc
Q psy9171         103 SGY  105 (118)
Q Consensus       103 S~~  105 (118)
                      +..
T Consensus       281 Ai~  283 (612)
T TIGR01645       281 CVT  283 (612)
T ss_pred             cCC
Confidence            875

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG0109|consensus

Probab=99.37  E-value=5.5e-13  Score=108.89  Aligned_cols=72  Identities=25%  Similarity=0.266  Sum_probs=67.9

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccccc
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRN  107 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~~  107 (118)
                      .|||+|||.++++++|+.||++||+|+++.++  ||+|||.++++.+|.-||.+  +++.+|+|.+|.|.-|+++|
T Consensus         4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairN--LhgYtLhg~nInVeaSksKs   75 (346)
T KOG0109|consen    4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRN--LHGYTLHGVNINVEASKSKS   75 (346)
T ss_pred             chhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhh--cccceecceEEEEEeccccC
Confidence            39999999999999999999999999999998  58999999999999999966  89999999999999999884

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.35  E-value=1.9e-12  Score=106.73  Aligned_cols=78  Identities=9%  Similarity=0.184  Sum_probs=68.1

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCC--eeeEE
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKG--KNQVS  100 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G--r~v~V  100 (118)
                      .+..|||+|||+++||++|.++|++||.|..+.++++      |++|||||++.++|.+|+..  +|+..+.|  +++.|
T Consensus       192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~--lng~~~~g~~~~l~V  269 (346)
T TIGR01659       192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA--LNNVIPEGGSQPLTV  269 (346)
T ss_pred             ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH--hCCCccCCCceeEEE
Confidence            4567999999999999999999999999999999864      48999999999999999965  78887766  68999


Q ss_pred             Eeccccch
Q psy9171         101 LISGYRNR  108 (118)
Q Consensus       101 ~~S~~~~~  108 (118)
                      .++..+..
T Consensus       270 ~~a~~~~~  277 (346)
T TIGR01659       270 RLAEEHGK  277 (346)
T ss_pred             EECCcccc
Confidence            98876443

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=99.35  E-value=3.5e-12  Score=77.66  Aligned_cols=69  Identities=23%  Similarity=0.267  Sum_probs=62.4

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      +|+|+|||+++++++|.++|+.||.|.++.+...     ++.|||+|.+.++|..|+..  +++..++|+++.+.+
T Consensus         1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~--~~~~~~~~~~~~v~~   74 (74)
T cd00590           1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEA--LNGKELGGRPLRVEF   74 (74)
T ss_pred             CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHH--hCCCeECCeEEEEeC
Confidence            4899999999999999999999999999999864     68999999999999999864  778889999998864

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.33  E-value=2.7e-12  Score=112.80  Aligned_cols=75  Identities=17%  Similarity=0.048  Sum_probs=67.8

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .....|||+|||+++||++|.++|++||.|.++.++.      .||+|||||++.++|..|+..  +|+..+.||+|.|.
T Consensus       105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~--lnG~~i~GR~IkV~  182 (612)
T TIGR01645       105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQ--MNGQMLGGRNIKVG  182 (612)
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHh--cCCeEEecceeeec
Confidence            3456899999999999999999999999999999974      389999999999999999854  89999999999998


Q ss_pred             ecc
Q psy9171         102 ISG  104 (118)
Q Consensus       102 ~S~  104 (118)
                      .+.
T Consensus       183 rp~  185 (612)
T TIGR01645       183 RPS  185 (612)
T ss_pred             ccc
Confidence            654

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG0114|consensus

Probab=99.33  E-value=3.6e-12  Score=91.26  Aligned_cols=76  Identities=16%  Similarity=0.148  Sum_probs=69.4

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec---cCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK---GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~---~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      .-+++|||||||.++|.++...||..||.|..+++=.   .||-|||.+++..+|..|..+  +++.-+.++.+.+.|=+
T Consensus        16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dh--lsg~n~~~ryl~vlyyq   93 (124)
T KOG0114|consen   16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDH--LSGYNVDNRYLVVLYYQ   93 (124)
T ss_pred             hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHH--hcccccCCceEEEEecC
Confidence            3489999999999999999999999999999999953   489999999999999999876  88999999999999875


Q ss_pred             c
Q psy9171         105 Y  105 (118)
Q Consensus       105 ~  105 (118)
                      .
T Consensus        94 ~   94 (124)
T KOG0114|consen   94 P   94 (124)
T ss_pred             H
Confidence            5

>smart00360 RRM RNA recognition motif

Probab=99.33  E-value=2.8e-12  Score=77.28  Aligned_cols=64  Identities=25%  Similarity=0.296  Sum_probs=57.6

Q ss_pred             eCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          35 IRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        35 V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      |+|||+++++++|.++|++||.|..+.+...      +++|||+|.+.++|..|+..  +++..+.|+.+.|
T Consensus         1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~--~~~~~~~~~~~~v   70 (71)
T smart00360        1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEA--LNGKELDGRPLKV   70 (71)
T ss_pred             CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHH--cCCCeeCCcEEEe
Confidence            6899999999999999999999999988764      57999999999999999854  7788899999876

>KOG0107|consensus

Probab=99.30  E-value=4.7e-12  Score=97.17  Aligned_cols=81  Identities=14%  Similarity=0.040  Sum_probs=72.7

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      .+-...|||+||+.++|+.||..+|..||++-+|-+... .|+|||||+|..+|.-|+.+  +++..|-|..+.|..|+-
T Consensus         7 ~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~--LDG~~~cG~r~rVE~S~G   84 (195)
T KOG0107|consen    7 RNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRY--LDGKDICGSRIRVELSTG   84 (195)
T ss_pred             cCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhh--cCCccccCceEEEEeecC
Confidence            344567999999999999999999999999999988764 69999999999999999865  999999999999999987


Q ss_pred             cchH
Q psy9171         106 RNRQ  109 (118)
Q Consensus       106 ~~~~  109 (118)
                      +.++
T Consensus        85 ~~r~   88 (195)
T KOG0107|consen   85 RPRG   88 (195)
T ss_pred             Cccc
Confidence            7654

>KOG0148|consensus

Probab=99.29  E-value=6.8e-12  Score=101.71  Aligned_cols=75  Identities=17%  Similarity=0.170  Sum_probs=69.6

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      +-+-++|++|++..+||+++++.|++||.|.++++.+++|+|||-|++.|+|..||..  +|+.+|.|..|+-..-+
T Consensus       162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~--mNntei~G~~VkCsWGK  236 (321)
T KOG0148|consen  162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQ--MNNTEIGGQLVRCSWGK  236 (321)
T ss_pred             CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHH--hcCceeCceEEEEeccc
Confidence            4466799999999999999999999999999999999999999999999999999976  99999999999876654

>PLN03121 nucleic acid binding protein; Provisional

Probab=99.29  E-value=8.8e-12  Score=99.17  Aligned_cols=71  Identities=7%  Similarity=0.065  Sum_probs=65.0

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc---CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG---KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~---kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      ..+|||+||++++||.||.++|+.||+|.++.|+.+   +++|||+|.++++|..|+   .+|+..|.|++|.|.-.
T Consensus         5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl---lLnGa~l~d~~I~It~~   78 (243)
T PLN03121          5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV---LLSGATIVDQRVCITRW   78 (243)
T ss_pred             ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH---hcCCCeeCCceEEEEeC
Confidence            468999999999999999999999999999999974   578999999999999997   39999999999988763

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.28  E-value=7.6e-12  Score=104.58  Aligned_cols=72  Identities=15%  Similarity=0.103  Sum_probs=63.9

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCC------------CceeEEEEeccCceEEEeecchhhhhcccccccccceeeCC
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPF------------GRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKG   95 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~f------------G~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G   95 (118)
                      .++++|||+|||+++|+++|.++|.+|            +.|.++.+.+.+|+|||||.+.++|..|+.   +|+..+.|
T Consensus       173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~---l~g~~~~g  249 (509)
T TIGR01642       173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMA---LDSIIYSN  249 (509)
T ss_pred             ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhc---CCCeEeeC
Confidence            457899999999999999999999864            567777777889999999999999999973   89999999


Q ss_pred             eeeEEEe
Q psy9171          96 KNQVSLI  102 (118)
Q Consensus        96 r~v~V~~  102 (118)
                      ++|.|.-
T Consensus       250 ~~l~v~r  256 (509)
T TIGR01642       250 VFLKIRR  256 (509)
T ss_pred             ceeEecC
Confidence            9999864

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0108|consensus

Probab=99.25  E-value=1.1e-11  Score=105.49  Aligned_cols=78  Identities=15%  Similarity=0.122  Sum_probs=72.8

Q ss_pred             cEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      ..+||+|+|++++|++|..+|+..|.|.+++++-+      ||+||+||.++++|..|+..  +|+.++.||+++++|+.
T Consensus        19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~--lNg~~~~gr~l~v~~~~   96 (435)
T KOG0108|consen   19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRN--LNGAEFNGRKLRVNYAS   96 (435)
T ss_pred             cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHh--cCCcccCCceEEeeccc
Confidence            78999999999999999999999999999999843      89999999999999999965  99999999999999998


Q ss_pred             ccchHH
Q psy9171         105 YRNRQS  110 (118)
Q Consensus       105 ~~~~~~  110 (118)
                      .+.+-|
T Consensus        97 ~~~~~~  102 (435)
T KOG0108|consen   97 NRKNAE  102 (435)
T ss_pred             ccchhH
Confidence            877654

>KOG0111|consensus

Probab=99.25  E-value=3.7e-12  Score=101.34  Aligned_cols=80  Identities=16%  Similarity=0.155  Sum_probs=72.2

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      .-|+|||+.|..++||.-|...|.|||.|.++.+.-      -||+|||||+..|+|.+||.+  +|..++.||.|+|+|
T Consensus         9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDN--MnesEL~GrtirVN~   86 (298)
T KOG0111|consen    9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDN--MNESELFGRTIRVNL   86 (298)
T ss_pred             cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhc--CchhhhcceeEEEee
Confidence            457999999999999999999999999999998863      389999999999999999976  999999999999999


Q ss_pred             ccccchHH
Q psy9171         103 SGYRNRQS  110 (118)
Q Consensus       103 S~~~~~~~  110 (118)
                      ++--.+.|
T Consensus        87 AkP~kike   94 (298)
T KOG0111|consen   87 AKPEKIKE   94 (298)
T ss_pred             cCCccccC
Confidence            98655443

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.20  E-value=2.9e-11  Score=105.77  Aligned_cols=73  Identities=14%  Similarity=0.109  Sum_probs=64.3

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-----cCceEEEeecchhhhhcccccccccceeeC-CeeeEEEec
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLK-GKNQVSLIS  103 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~-Gr~v~V~~S  103 (118)
                      ...|||+|||++++|++|.++|++||.|.+++++.     .||+|||+|.+.++|..|+..  +|+..++ ||.+.+..|
T Consensus        58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~--lng~~i~~Gr~l~V~~S  135 (578)
T TIGR01648        58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKL--LNNYEIRPGRLLGVCIS  135 (578)
T ss_pred             CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHH--cCCCeecCCcccccccc
Confidence            35799999999999999999999999999999975     379999999999999999864  8888886 788777666


Q ss_pred             c
Q psy9171         104 G  104 (118)
Q Consensus       104 ~  104 (118)
                      .
T Consensus       136 ~  136 (578)
T TIGR01648       136 V  136 (578)
T ss_pred             c
Confidence            3

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG0109|consensus

Probab=99.19  E-value=1.7e-11  Score=100.28  Aligned_cols=81  Identities=23%  Similarity=0.241  Sum_probs=74.3

Q ss_pred             CCCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        24 ~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      ++...+|..|||+||.+.+|-+||++.|++||+|.++.++  |+++||.|+-.++|..|+.+  +|+.++.|+++.|+.|
T Consensus        72 ksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--kdy~fvh~d~~eda~~air~--l~~~~~~gk~m~vq~s  147 (346)
T KOG0109|consen   72 KSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--KDYAFVHFDRAEDAVEAIRG--LDNTEFQGKRMHVQLS  147 (346)
T ss_pred             cccCCCccccccCCCCccccCHHHhhhhcccCCceeeeee--cceeEEEEeeccchHHHHhc--ccccccccceeeeeee
Confidence            3444789999999999999999999999999999999998  57999999999999999976  9999999999999999


Q ss_pred             cccch
Q psy9171         104 GYRNR  108 (118)
Q Consensus       104 ~~~~~  108 (118)
                      +++=|
T Consensus       148 tsrlr  152 (346)
T KOG0109|consen  148 TSRLR  152 (346)
T ss_pred             ccccc
Confidence            98755

>KOG0117|consensus

Probab=99.18  E-value=2.5e-11  Score=103.40  Aligned_cols=72  Identities=21%  Similarity=0.192  Sum_probs=66.9

Q ss_pred             cEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      ++||||||+.++||+.|.++|++||.|..|.-+  |.+|||.|.+-++|..|+..  +|+..|.|.+|.+..|+-.
T Consensus       260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~--rDYaFVHf~eR~davkAm~~--~ngkeldG~~iEvtLAKP~  331 (506)
T KOG0117|consen  260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKP--RDYAFVHFAEREDAVKAMKE--TNGKELDGSPIEVTLAKPV  331 (506)
T ss_pred             eeeeeeccchhhhHHHHHHHHHhccceEEeecc--cceeEEeecchHHHHHHHHH--hcCceecCceEEEEecCCh
Confidence            579999999999999999999999999999877  55999999999999999854  9999999999999999754

>KOG1456|consensus

Probab=99.16  E-value=3.2e-11  Score=101.52  Aligned_cols=82  Identities=22%  Similarity=0.227  Sum_probs=77.1

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      .+||+|+|||+|-..++|.||.+..+.||.|.-+.+++.+.||+|||+|.+.|.+|+.+..-|.+.+.|..-.|+||+++
T Consensus        28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq  107 (494)
T KOG1456|consen   28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQ  107 (494)
T ss_pred             CCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhh
Confidence            37899999999999999999999999999999999999999999999999999999887778899999999999999886


Q ss_pred             ch
Q psy9171         107 NR  108 (118)
Q Consensus       107 ~~  108 (118)
                      .|
T Consensus       108 ~i  109 (494)
T KOG1456|consen  108 CI  109 (494)
T ss_pred             hh
Confidence            54

>KOG0113|consensus

Probab=99.15  E-value=7.7e-11  Score=96.43  Aligned_cols=80  Identities=10%  Similarity=0.164  Sum_probs=71.8

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ   98 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v   98 (118)
                      .+..|=++|||.-|+++++|.+|...|+.||.|.++.|+.+      ||+|||||+++.+-.+|.  +..+++.|+||.|
T Consensus        96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AY--K~adG~~Idgrri  173 (335)
T KOG0113|consen   96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAY--KDADGIKIDGRRI  173 (335)
T ss_pred             ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHH--HhccCceecCcEE
Confidence            33468899999999999999999999999999999999864      899999999999999885  4588999999999


Q ss_pred             EEEecccc
Q psy9171          99 VSLISGYR  106 (118)
Q Consensus        99 ~V~~S~~~  106 (118)
                      .|.|-+-+
T Consensus       174 ~VDvERgR  181 (335)
T KOG0113|consen  174 LVDVERGR  181 (335)
T ss_pred             EEEecccc
Confidence            99997654

>KOG0127|consensus

Probab=99.15  E-value=5.5e-11  Score=103.54  Aligned_cols=81  Identities=12%  Similarity=0.122  Sum_probs=73.3

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      |-.-|-|||||+.+.+.+|..+|+.||.|..+.+.+.     .|+|||.|.+..+|..|+.+  +|+..|.||+|+|.+|
T Consensus       116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~--~N~~~i~gR~VAVDWA  193 (678)
T KOG0127|consen  116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEF--FNGNKIDGRPVAVDWA  193 (678)
T ss_pred             ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHh--ccCceecCceeEEeee
Confidence            4567999999999999999999999999999999742     59999999999999999976  9999999999999999


Q ss_pred             cccchHHH
Q psy9171         104 GYRNRQSA  111 (118)
Q Consensus       104 ~~~~~~~~  111 (118)
                      =..++=|.
T Consensus       194 V~Kd~ye~  201 (678)
T KOG0127|consen  194 VDKDTYED  201 (678)
T ss_pred             cccccccc
Confidence            87776554

>KOG0105|consensus

Probab=99.15  E-value=6.9e-11  Score=92.09  Aligned_cols=76  Identities=18%  Similarity=0.215  Sum_probs=68.5

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc---CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG---KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~---kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      ..+..|||+|||.++.|.|+..||..||.|..+.|-..   -.+|||||++.-+|.-||++  -++..+.|-+++|.|.+
T Consensus         4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiyg--RdGYdydg~rLRVEfpr   81 (241)
T KOG0105|consen    4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYG--RDGYDYDGCRLRVEFPR   81 (241)
T ss_pred             cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhc--ccccccCcceEEEEecc
Confidence            45678999999999999999999999999999988643   47999999999999999976  77999999999999975


Q ss_pred             c
Q psy9171         105 Y  105 (118)
Q Consensus       105 ~  105 (118)
                      .
T Consensus        82 g   82 (241)
T KOG0105|consen   82 G   82 (241)
T ss_pred             C
Confidence            3

>KOG0415|consensus

Probab=99.14  E-value=4.5e-11  Score=100.15  Aligned_cols=79  Identities=11%  Similarity=0.153  Sum_probs=71.3

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ   98 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v   98 (118)
                      ...||..||||+.|.+-+|++||..+|+.||+|.++.++++      -.+|||||++.++.++|.+  .++..+|..|+|
T Consensus       234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyF--KMdNvLIDDrRI  311 (479)
T KOG0415|consen  234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYF--KMDNVLIDDRRI  311 (479)
T ss_pred             ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHh--hhcceeeccceE
Confidence            34589999999999999999999999999999999999975      2569999999999999954  488999999999


Q ss_pred             EEEeccc
Q psy9171          99 VSLISGY  105 (118)
Q Consensus        99 ~V~~S~~  105 (118)
                      -|.||++
T Consensus       312 HVDFSQS  318 (479)
T KOG0415|consen  312 HVDFSQS  318 (479)
T ss_pred             Eeehhhh
Confidence            9999943

>KOG0127|consensus

Probab=99.11  E-value=1.7e-10  Score=100.58  Aligned_cols=85  Identities=21%  Similarity=0.318  Sum_probs=71.9

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccc----cccceeeCCee
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGR----VTNVLVLKGKN   97 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~----~~n~~~i~Gr~   97 (118)
                      .-.++|||||||+++||++|.+.|++||.|..+.++.      .+|-|||.|.+..+|.+||...    ...++.+.||-
T Consensus       290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~  369 (678)
T KOG0127|consen  290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL  369 (678)
T ss_pred             cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence            3458999999999999999999999999999998874      2789999999999999998764    12248999999


Q ss_pred             eEEEeccccchHHHHHh
Q psy9171          98 QVSLISGYRNRQSAALM  114 (118)
Q Consensus        98 v~V~~S~~~~~~~~~~~  114 (118)
                      +.|.-+=  .|-||+.|
T Consensus       370 Lkv~~Av--~RkeA~dm  384 (678)
T KOG0127|consen  370 LKVTLAV--TRKEAADM  384 (678)
T ss_pred             Eeeeecc--chHHHHHH
Confidence            9988774  46677765

>KOG0149|consensus

Probab=99.10  E-value=1.2e-10  Score=92.56  Aligned_cols=69  Identities=10%  Similarity=0.132  Sum_probs=59.5

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      .|||++|||+++.++|+..|++||.|++..++.+      ||++||.|.|.++|++|...   -...|+||+-..+-|
T Consensus        14 KifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d---p~piIdGR~aNcnlA   88 (247)
T KOG0149|consen   14 KIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD---PNPIIDGRKANCNLA   88 (247)
T ss_pred             EEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC---CCCcccccccccchh
Confidence            4999999999999999999999999999999853      89999999999999999542   356799996655544

>KOG0131|consensus

Probab=99.07  E-value=8e-11  Score=90.90  Aligned_cols=74  Identities=18%  Similarity=0.148  Sum_probs=68.0

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      ..-+|||+||++.+|++-|-+||-+-|+|+++.+.++      +|+||+||.++|+|.=|+  +.+|.+.+-||+|+|+-
T Consensus         8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAi--kiln~VkLYgrpIrv~k   85 (203)
T KOG0131|consen    8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAI--KILNMVKLYGRPIRVNK   85 (203)
T ss_pred             CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHH--HHHHHHHhcCceeEEEe
Confidence            3558999999999999999999999999999999753      799999999999999997  45999999999999998


Q ss_pred             cc
Q psy9171         103 SG  104 (118)
Q Consensus       103 S~  104 (118)
                      +.
T Consensus        86 as   87 (203)
T KOG0131|consen   86 AS   87 (203)
T ss_pred             cc
Confidence            87

>KOG0122|consensus

Probab=99.07  E-value=4.2e-10  Score=90.08  Aligned_cols=78  Identities=17%  Similarity=0.141  Sum_probs=69.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .-+.+|-|.|||.+.+|+||.+||.+||.|..+.+.++      ||+|||.|.+.++|.+||..  +|+.=...=-|.+-
T Consensus       187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~--LnG~gyd~LILrvE  264 (270)
T KOG0122|consen  187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIAD--LNGYGYDNLILRVE  264 (270)
T ss_pred             CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHH--ccCcccceEEEEEE
Confidence            34567999999999999999999999999999999863      89999999999999999965  88888888888888


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      +|+-++
T Consensus       265 wskP~~  270 (270)
T KOG0122|consen  265 WSKPSN  270 (270)
T ss_pred             ecCCCC
Confidence            887653

>KOG0145|consensus

Probab=99.01  E-value=7.4e-10  Score=90.07  Aligned_cols=75  Identities=20%  Similarity=0.137  Sum_probs=69.2

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      .-.|||=||.+|..|.-|-+||.|||.|.||+++++      ||++||.|.+-++|-+|+..  +|+..+.+|.+.|.|-
T Consensus       278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~s--LNGy~lg~rvLQVsFK  355 (360)
T KOG0145|consen  278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS--LNGYRLGDRVLQVSFK  355 (360)
T ss_pred             eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHH--hcCccccceEEEEEEe
Confidence            346999999999999999999999999999999975      89999999999999999976  9999999999999997


Q ss_pred             ccc
Q psy9171         104 GYR  106 (118)
Q Consensus       104 ~~~  106 (118)
                      +++
T Consensus       356 tnk  358 (360)
T KOG0145|consen  356 TNK  358 (360)
T ss_pred             cCC
Confidence            654

>KOG0148|consensus

Probab=98.96  E-value=7.5e-10  Score=89.96  Aligned_cols=74  Identities=12%  Similarity=0.120  Sum_probs=69.3

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      -+||+-|.++++-++|++.|.|||.|.+.+++++      ||++||.|.+.++|++||..  +|+.+|.+|.|+-+.|+.
T Consensus        64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~--MnGqWlG~R~IRTNWATR  141 (321)
T KOG0148|consen   64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQ--MNGQWLGRRTIRTNWATR  141 (321)
T ss_pred             eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHH--hCCeeeccceeecccccc
Confidence            4889999999999999999999999999999964      89999999999999999976  999999999999999987


Q ss_pred             cc
Q psy9171         106 RN  107 (118)
Q Consensus       106 ~~  107 (118)
                      +.
T Consensus       142 Kp  143 (321)
T KOG0148|consen  142 KP  143 (321)
T ss_pred             Cc
Confidence            65

>KOG0117|consensus

Probab=98.94  E-value=1.7e-09  Score=92.42  Aligned_cols=90  Identities=13%  Similarity=0.072  Sum_probs=73.0

Q ss_pred             eeeeccCCCC-CCCCC--CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhccccc
Q psy9171          15 VVQAKLDRQK-SDFKP--SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFG   85 (118)
Q Consensus        15 ~~~~~~~~~~-~~~~P--S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~   85 (118)
                      +||+.++.-- +.-+|  .--|||+.||.|+.|+||.-||+.-|+|-+++|+.+      ||+|||.|.+.++|..||. 
T Consensus        65 qrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik-  143 (506)
T KOG0117|consen   65 QRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIK-  143 (506)
T ss_pred             ccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHH-
Confidence            6777766321 22122  445999999999999999999999999999999864      9999999999999999995 


Q ss_pred             ccccceee-CCeeeEEEecccc
Q psy9171          86 RVTNVLVL-KGKNQVSLISGYR  106 (118)
Q Consensus        86 ~~~n~~~i-~Gr~v~V~~S~~~  106 (118)
                       .+|..+| .||.|.++-|-..
T Consensus       144 -~lnn~Eir~GK~igvc~Svan  164 (506)
T KOG0117|consen  144 -ELNNYEIRPGKLLGVCVSVAN  164 (506)
T ss_pred             -HhhCccccCCCEeEEEEeeec
Confidence             4777776 5899999888543

>KOG0130|consensus

Probab=98.93  E-value=8.9e-10  Score=82.29  Aligned_cols=72  Identities=19%  Similarity=0.125  Sum_probs=65.0

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      .-+|||.++-++.||+|+...|+.||.|.|+.+--      -||+|+||+++.++|.+|+..  +|+..+.|.+|.|.+.
T Consensus        72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~--~Ng~~ll~q~v~VDw~  149 (170)
T KOG0130|consen   72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDA--LNGAELLGQNVSVDWC  149 (170)
T ss_pred             eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHh--ccchhhhCCceeEEEE
Confidence            34699999999999999999999999999998852      289999999999999999965  9999999999988765

>KOG4207|consensus

Probab=98.90  E-value=1.2e-09  Score=86.27  Aligned_cols=73  Identities=12%  Similarity=0.208  Sum_probs=67.4

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      .|-|=||.+.+|-++|..+|+.||.|.+|.+..+      +|||||-|-+..+|+.|+..  +++..++||.+.|+++++
T Consensus        15 SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~da--mDG~~ldgRelrVq~ary   92 (256)
T KOG4207|consen   15 SLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDA--MDGAVLDGRELRVQMARY   92 (256)
T ss_pred             eEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHh--hcceeeccceeeehhhhc
Confidence            5899999999999999999999999999999753      89999999999999999865  889999999999999987


Q ss_pred             c
Q psy9171         106 R  106 (118)
Q Consensus       106 ~  106 (118)
                      -
T Consensus        93 g   93 (256)
T KOG4207|consen   93 G   93 (256)
T ss_pred             C
Confidence            4

>KOG0123|consensus

Probab=98.81  E-value=4.5e-09  Score=87.67  Aligned_cols=68  Identities=18%  Similarity=0.209  Sum_probs=63.5

Q ss_pred             EEeCCCCCcccHHHHHHhccCCCceeEEEEecc----CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      +||.||+++++..+|...|+.||+|+++++..+    ||+ ||+|+++++|..|+..  +|+..+.|+.+++.-.
T Consensus        79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~--~ng~ll~~kki~vg~~  150 (369)
T KOG0123|consen   79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEK--LNGMLLNGKKIYVGLF  150 (369)
T ss_pred             eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHH--hcCcccCCCeeEEeec
Confidence            999999999999999999999999999999864    888 9999999999999964  9999999999998654

>KOG0147|consensus

Probab=98.79  E-value=4.1e-09  Score=91.37  Aligned_cols=75  Identities=19%  Similarity=0.134  Sum_probs=67.0

Q ss_pred             EEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      |||+||-..+||++|..+|+|||+|.++-+..+      |||+|++|-+.+.|..|...  +|++.|-||.|+|.-=+.+
T Consensus       281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~--lngfelAGr~ikV~~v~~r  358 (549)
T KOG0147|consen  281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQ--LNGFELAGRLIKVSVVTER  358 (549)
T ss_pred             hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHH--hccceecCceEEEEEeeee
Confidence            999999999999999999999999999988753      89999999999999999754  9999999999998766554


Q ss_pred             chH
Q psy9171         107 NRQ  109 (118)
Q Consensus       107 ~~~  109 (118)
                      .-+
T Consensus       359 ~~~  361 (549)
T KOG0147|consen  359 VDT  361 (549)
T ss_pred             ccc
Confidence            433

>KOG0121|consensus

Probab=98.79  E-value=6.1e-09  Score=77.09  Aligned_cols=72  Identities=11%  Similarity=-0.067  Sum_probs=64.8

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      .|-+|||+||+.-+||+++-+||+.-|.|..+.|=-+      =|++|||+-+.++|..|+.+  .|+..+..|+|++.+
T Consensus        35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alry--isgtrLddr~ir~D~  112 (153)
T KOG0121|consen   35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRY--ISGTRLDDRPIRIDW  112 (153)
T ss_pred             hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHH--hccCcccccceeeec
Confidence            4558999999999999999999999999999988422      38999999999999999965  899999999999875

>KOG0110|consensus

Probab=98.78  E-value=7e-09  Score=92.11  Aligned_cols=70  Identities=17%  Similarity=0.104  Sum_probs=65.1

Q ss_pred             EEeCCCCCcccHHHHHHhccCCCceeEEEEeccC---------ceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGK---------NQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~k---------gqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      ||+.||++++|.++|..+|...|.|..+.|.+.+         |+|||||.+.++|..|+..  +++..++|+.+.+.+|
T Consensus       518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~--lqgtvldGH~l~lk~S  595 (725)
T KOG0110|consen  518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKA--LQGTVLDGHKLELKIS  595 (725)
T ss_pred             hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHH--hcCceecCceEEEEec
Confidence            9999999999999999999999999999887532         9999999999999999754  8899999999999999


Q ss_pred             c
Q psy9171         104 G  104 (118)
Q Consensus       104 ~  104 (118)
                      -
T Consensus       596 ~  596 (725)
T KOG0110|consen  596 E  596 (725)
T ss_pred             c
Confidence            7

>KOG0116|consensus

Probab=98.77  E-value=1.2e-08  Score=86.77  Aligned_cols=77  Identities=18%  Similarity=0.131  Sum_probs=66.0

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec----cC--ceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK----GK--NQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~----~k--gqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      ...|||+|||.++++.+|.+.|.+||.|....+..    ++  ++|||+|++.+++..++.   +++..+.||++.|-.=
T Consensus       288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~---Asp~~ig~~kl~Veek  364 (419)
T KOG0116|consen  288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE---ASPLEIGGRKLNVEEK  364 (419)
T ss_pred             ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh---cCccccCCeeEEEEec
Confidence            34499999999999999999999999999887753    23  899999999999999975   5599999999999876


Q ss_pred             cccchH
Q psy9171         104 GYRNRQ  109 (118)
Q Consensus       104 ~~~~~~  109 (118)
                      +..+++
T Consensus       365 ~~~~~g  370 (419)
T KOG0116|consen  365 RPGFRG  370 (419)
T ss_pred             cccccc
Confidence            655443

>KOG0153|consensus

Probab=98.77  E-value=1.4e-08  Score=84.49  Aligned_cols=76  Identities=16%  Similarity=0.155  Sum_probs=70.5

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      ..++|||++|-++++|.||+..|.+||.+..++++..++=|||+|.+-++|+.|.. ...|-+.|+|++|.|..++.
T Consensus       227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae-~~~n~lvI~G~Rl~i~Wg~~  302 (377)
T KOG0153|consen  227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAE-KSFNKLVINGFRLKIKWGRP  302 (377)
T ss_pred             ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHH-hhcceeeecceEEEEEeCCC
Confidence            36789999999999999999999999999999999999999999999999999954 55789999999999998876

>KOG0132|consensus

Probab=98.77  E-value=1e-08  Score=92.04  Aligned_cols=77  Identities=14%  Similarity=0.159  Sum_probs=70.3

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      .-|+||+|+.||-.++|.||..+|++||.|.++.++..|+-|||.|..-.+|..|+..  ++...+.++.|++.++...
T Consensus       419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqk--l~n~kv~~k~Iki~Wa~g~  495 (894)
T KOG0132|consen  419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQK--LSNVKVADKTIKIAWAVGK  495 (894)
T ss_pred             EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHH--HhcccccceeeEEeeeccC
Confidence            3499999999999999999999999999999999999999999999999999999754  6688899999998887543

>KOG0124|consensus

Probab=98.77  E-value=3.4e-09  Score=89.46  Aligned_cols=68  Identities=21%  Similarity=0.126  Sum_probs=63.2

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEe------ccCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL------KGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~------~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      -+||+.+.+++.|+.|+..|.|||+|.++.|-      +.||+||||++-+|.|.-|+..  +|+..+.||++.|.
T Consensus       115 RvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEq--MNg~mlGGRNiKVg  188 (544)
T KOG0124|consen  115 RVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQ--MNGQMLGGRNIKVG  188 (544)
T ss_pred             heeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHH--hccccccCcccccc
Confidence            38999999999999999999999999999994      2489999999999999999865  99999999999997

>smart00361 RRM_1 RNA recognition motif

Probab=98.75  E-value=1.4e-08  Score=65.24  Aligned_cols=55  Identities=11%  Similarity=0.102  Sum_probs=46.4

Q ss_pred             HHHHHHhcc----CCCceeEEE--Eec-------cCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          44 EAEIIHLGI----PFGRVTNVL--VLK-------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        44 e~dL~~Lf~----~fG~V~~v~--l~~-------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      ++||.++|+    +||.|.++.  .+.       .||+|||+|++.++|..|+..  +|+..+.||+|.+
T Consensus         2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~--l~g~~~~gr~l~~   69 (70)
T smart00361        2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVD--LNGRYFDGRTVKA   69 (70)
T ss_pred             chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHH--hCCCEECCEEEEe
Confidence            567777777    999999985  332       279999999999999999865  9999999999865

>KOG4208|consensus

Probab=98.69  E-value=3.3e-08  Score=77.37  Aligned_cols=75  Identities=20%  Similarity=0.197  Sum_probs=65.9

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCC-CceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPF-GRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~f-G~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      .+.-++++..+|...-|.++...|.+| |.|..+++.+      .||+|||||++++.|.-|...  +|..++.|+-+..
T Consensus        47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAET--MNNYLl~e~lL~c  124 (214)
T KOG4208|consen   47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAET--MNNYLLMEHLLEC  124 (214)
T ss_pred             CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHH--hhhhhhhhheeee
Confidence            556789999999999999999999999 7888888853      389999999999999988654  9999999999988


Q ss_pred             Eecc
Q psy9171         101 LISG  104 (118)
Q Consensus       101 ~~S~  104 (118)
                      .|.-
T Consensus       125 ~vmp  128 (214)
T KOG4208|consen  125 HVMP  128 (214)
T ss_pred             EEeC
Confidence            8764

>KOG0110|consensus

Probab=98.69  E-value=1.4e-08  Score=90.16  Aligned_cols=77  Identities=22%  Similarity=0.166  Sum_probs=69.5

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      ...|+|||||...|..+++.||++||.+..+++.+.      ||+|||+|-+..+|.+|..+  +...-+-||++++.+|
T Consensus       613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a--l~STHlyGRrLVLEwA  690 (725)
T KOG0110|consen  613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA--LGSTHLYGRRLVLEWA  690 (725)
T ss_pred             cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh--hcccceechhhheehh
Confidence            346999999999999999999999999999999853      89999999999999999765  5588999999999999


Q ss_pred             cccch
Q psy9171         104 GYRNR  108 (118)
Q Consensus       104 ~~~~~  108 (118)
                      ..-+-
T Consensus       691 ~~d~~  695 (725)
T KOG0110|consen  691 KSDNT  695 (725)
T ss_pred             ccchH
Confidence            88654

>KOG0145|consensus

Probab=98.66  E-value=6.7e-08  Score=78.79  Aligned_cols=77  Identities=14%  Similarity=0.101  Sum_probs=69.9

Q ss_pred             CcE-EEeCCCCCcccHHHHHHhccCCCceeEEEEeccC------ceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          30 SRV-IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGK------NQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        30 S~v-L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~k------gqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      |++ |.|.=||...|++|+++||...|.|.+++++++|      |++||-+-++++|++|+.  .+|++.+..|.|+|.|
T Consensus        40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~Ain--tlNGLrLQ~KTIKVSy  117 (360)
T KOG0145|consen   40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAIN--TLNGLRLQNKTIKVSY  117 (360)
T ss_pred             ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHh--hhcceeeccceEEEEe
Confidence            454 8888899999999999999999999999999763      679999999999999985  4999999999999999


Q ss_pred             ccccch
Q psy9171         103 SGYRNR  108 (118)
Q Consensus       103 S~~~~~  108 (118)
                      ++-+|-
T Consensus       118 ARPSs~  123 (360)
T KOG0145|consen  118 ARPSSD  123 (360)
T ss_pred             ccCChh
Confidence            998764

>KOG4206|consensus

Probab=98.66  E-value=5.2e-08  Score=76.77  Aligned_cols=76  Identities=9%  Similarity=0.124  Sum_probs=68.7

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-cCceEEEeecchhhhhcccccccccceeeC-CeeeEEEecc
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-GKNQLLLHLEAEIIHLGIPFGRVTNVLVLK-GKNQVSLISG  104 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~-Gr~v~V~~S~  104 (118)
                      .+|+.+|++.|||.+++.+.|..+|++|+....++++. .++.|||||+++..|..|...  +.+..|. +..+.|.||+
T Consensus       143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~--lq~~~it~~~~m~i~~a~  220 (221)
T KOG4206|consen  143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQA--LQGFKITKKNTMQITFAK  220 (221)
T ss_pred             CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhh--hccceeccCceEEecccC
Confidence            58999999999999999999999999999999999998 579999999999999998755  6677887 7788888875

>KOG0144|consensus

Probab=98.66  E-value=1.5e-08  Score=86.50  Aligned_cols=78  Identities=13%  Similarity=0.241  Sum_probs=69.6

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhccccccccc-ceeeCCe--eeE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTN-VLVLKGK--NQV   99 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n-~~~i~Gr--~v~   99 (118)
                      +-.+.|||+-|+..+||.|++++|++||.|.++.++++     ||-|||.|.+.|-|..||+.  +| ..+++|-  |+.
T Consensus       122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika--~ng~~tmeGcs~PLV  199 (510)
T KOG0144|consen  122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKA--LNGTQTMEGCSQPLV  199 (510)
T ss_pred             ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHh--hccceeeccCCCceE
Confidence            55788999999999999999999999999999999974     89999999999999999976  77 4567876  899


Q ss_pred             EEeccccc
Q psy9171         100 SLISGYRN  107 (118)
Q Consensus       100 V~~S~~~~  107 (118)
                      |.|+..+.
T Consensus       200 VkFADtqk  207 (510)
T KOG0144|consen  200 VKFADTQK  207 (510)
T ss_pred             EEecccCC
Confidence            99997654

>KOG0123|consensus

Probab=98.46  E-value=1e-07  Score=79.57  Aligned_cols=75  Identities=12%  Similarity=0.141  Sum_probs=68.6

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      .+...|||.|++..++++.|..+|+.||.|.+.+++.+     +|++||+|++.++|+.|+.  ..|+..+.|+++++..
T Consensus       268 ~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~--~~n~~~i~~k~l~vav  345 (369)
T KOG0123|consen  268 LQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMT--EMNGRLIGGKPLYVAV  345 (369)
T ss_pred             ccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHH--hhChhhhcCCchhhhH
Confidence            66778999999999999999999999999999988753     8999999999999999975  4999999999999887


Q ss_pred             cc
Q psy9171         103 SG  104 (118)
Q Consensus       103 S~  104 (118)
                      ..
T Consensus       346 ~q  347 (369)
T KOG0123|consen  346 AQ  347 (369)
T ss_pred             Hh
Confidence            75

>KOG0146|consensus

Probab=98.45  E-value=8.2e-08  Score=78.54  Aligned_cols=75  Identities=17%  Similarity=0.232  Sum_probs=67.1

Q ss_pred             cEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      -.|||-.||.+..+.||.+.|.|||.|.+.++..+      |.++||.|++..+|.+||..  +|+..|.=|+++|+.-+
T Consensus       286 CNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqA--MNGFQIGMKRLKVQLKR  363 (371)
T KOG0146|consen  286 CNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA--MNGFQIGMKRLKVQLKR  363 (371)
T ss_pred             ceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHH--hcchhhhhhhhhhhhcC
Confidence            37999999999999999999999999999888743      78899999999999999976  99999999999988766


Q ss_pred             ccc
Q psy9171         105 YRN  107 (118)
Q Consensus       105 ~~~  107 (118)
                      -++
T Consensus       364 Pkd  366 (371)
T KOG0146|consen  364 PKD  366 (371)
T ss_pred             ccc
Confidence            543

>KOG4660|consensus

Probab=98.34  E-value=1.3e-07  Score=82.20  Aligned_cols=74  Identities=9%  Similarity=0.085  Sum_probs=67.5

Q ss_pred             CCCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-cCceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        24 ~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      .++..|.++|.|-|||..+++++|..+|+.||.|..+++-+ .+++.||||=|.-+|++|++.  +|+..+.|+++.
T Consensus        69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~--l~~~~~~~~~~k  143 (549)
T KOG4660|consen   69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKA--LNRREIAGKRIK  143 (549)
T ss_pred             CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHH--HHHHHhhhhhhc
Confidence            35557899999999999999999999999999999998876 479999999999999999855  999999999987

>KOG0106|consensus

Probab=98.30  E-value=8.3e-07  Score=69.84  Aligned_cols=69  Identities=12%  Similarity=0.065  Sum_probs=62.5

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      -+||++||+.+.+.||..+|..||.+-++.|..  +++||||+|.-+|.-|+  +.+|+..+.|-.+.+.+++
T Consensus         3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--gf~fv~fed~rda~Dav--~~l~~~~l~~e~~vve~~r   71 (216)
T KOG0106|consen    3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN--GFGFVEFEDPRDADDAV--HDLDGKELCGERLVVEHAR   71 (216)
T ss_pred             ceeecccCCccchhHHHHHHhhccccccceeec--ccceeccCchhhhhccc--chhcCceecceeeeeeccc
Confidence            489999999999999999999999999999875  56799999999999998  4588999988888888876

>KOG0124|consensus

Probab=98.28  E-value=8.8e-07  Score=75.09  Aligned_cols=69  Identities=13%  Similarity=0.126  Sum_probs=62.2

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      -|||..+-+|.+|+||.++|+.||+|..+.+.++      ||++|+||.+..+-..|+.+  +|-..+.|.=++|--
T Consensus       212 RiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias--MNlFDLGGQyLRVGk  286 (544)
T KOG0124|consen  212 RIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS--MNLFDLGGQYLRVGK  286 (544)
T ss_pred             eEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh--cchhhcccceEeccc
Confidence            4999999999999999999999999999999753      89999999999999999876  899999998777653

>KOG0144|consensus

Probab=98.27  E-value=8.4e-07  Score=75.98  Aligned_cols=80  Identities=19%  Similarity=0.175  Sum_probs=71.5

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ   98 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v   98 (118)
                      +. +-...|||.+||.+.-+.||...|.+||.|+...+.-+      |.++||.+|+..+|.+||..  +|+..|.+|++
T Consensus       420 eG-peGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~a--mngfQig~Krl  496 (510)
T KOG0144|consen  420 EG-PEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISA--MNGFQIGSKRL  496 (510)
T ss_pred             cC-CCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHH--hcchhhccccc
Confidence            44 66778999999999999999999999999998877632      78999999999999999855  99999999999


Q ss_pred             EEEeccccc
Q psy9171          99 VSLISGYRN  107 (118)
Q Consensus        99 ~V~~S~~~~  107 (118)
                      +|+-++.++
T Consensus       497 kVQlk~~~~  505 (510)
T KOG0144|consen  497 KVQLKRDRN  505 (510)
T ss_pred             eEEeeeccC
Confidence            999988765

>KOG4661|consensus

Probab=98.23  E-value=1e-06  Score=78.01  Aligned_cols=76  Identities=9%  Similarity=0.072  Sum_probs=68.2

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .-++.|.|..|...+.-.||..||+.||+|+-..++++      +.++||.|.+.++|+.||.+  ++...+.||-|-|.
T Consensus       403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~h--LHrTELHGrmISVE  480 (940)
T KOG4661|consen  403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEH--LHRTELHGRMISVE  480 (940)
T ss_pred             ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHH--hhhhhhcceeeeee
Confidence            44789999999999999999999999999998888753      89999999999999999977  88999999999887


Q ss_pred             eccc
Q psy9171         102 ISGY  105 (118)
Q Consensus       102 ~S~~  105 (118)
                      -+++
T Consensus       481 kaKN  484 (940)
T KOG4661|consen  481 KAKN  484 (940)
T ss_pred             eccc
Confidence            7654

>KOG4205|consensus

Probab=98.23  E-value=1.5e-06  Score=71.45  Aligned_cols=78  Identities=18%  Similarity=0.165  Sum_probs=65.4

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      +..|||++|+|++|++.|+.-|++||.|.++.++++      |+++||+|++++.-..++.   .....|.||.|..--+
T Consensus         6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~---~~~h~~dgr~ve~k~a   82 (311)
T KOG4205|consen    6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN---ARTHKLDGRSVEPKRA   82 (311)
T ss_pred             CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec---ccccccCCccccceec
Confidence            446999999999999999999999999999999863      7999999998888777753   3467899999888777


Q ss_pred             cccchHH
Q psy9171         104 GYRNRQS  110 (118)
Q Consensus       104 ~~~~~~~  110 (118)
                      -.+-.|+
T Consensus        83 v~r~~~~   89 (311)
T KOG4205|consen   83 VSREDQT   89 (311)
T ss_pred             cCccccc
Confidence            6655443

>KOG4205|consensus

Probab=98.22  E-value=2.7e-06  Score=69.95  Aligned_cols=74  Identities=15%  Similarity=0.208  Sum_probs=63.9

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      +++.+||+.||++++|.++.+.|.+||+|..+.++.      .|+++||.++++++...+..   .....+.|+.+.+.=
T Consensus        96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~---~~f~~~~gk~vevkr  172 (311)
T KOG4205|consen   96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL---QKFHDFNGKKVEVKR  172 (311)
T ss_pred             ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc---cceeeecCceeeEee
Confidence            467899999999999999999999999998887763      38999999999999988843   557889999998876


Q ss_pred             ccc
Q psy9171         103 SGY  105 (118)
Q Consensus       103 S~~  105 (118)
                      |.-
T Consensus       173 A~p  175 (311)
T KOG4205|consen  173 AIP  175 (311)
T ss_pred             ccc
Confidence            644

>KOG0533|consensus

Probab=98.21  E-value=1.9e-06  Score=68.77  Aligned_cols=77  Identities=17%  Similarity=0.137  Sum_probs=66.7

Q ss_pred             cEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      -.|+|.|||+.+++.||.+||..||.+..+.+-.+     .|.|-|.|+.-++|.+++.-  .|++.+.|+++.+.-...
T Consensus        84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~--~~gv~ldG~~mk~~~i~~  161 (243)
T KOG0533|consen   84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKK--YNGVALDGRPMKIEIISS  161 (243)
T ss_pred             ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHH--hcCcccCCceeeeEEecC
Confidence            45999999999999999999999998888877532     58999999999999999865  668999999999998876


Q ss_pred             cchH
Q psy9171         106 RNRQ  109 (118)
Q Consensus       106 ~~~~  109 (118)
                      .+..
T Consensus       162 ~~~~  165 (243)
T KOG0533|consen  162 PSQS  165 (243)
T ss_pred             cccc
Confidence            5544

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=98.11  E-value=3.7e-06  Score=59.00  Aligned_cols=70  Identities=14%  Similarity=0.129  Sum_probs=47.3

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhccccccccc---ceeeCCeeeEEE
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTN---VLVLKGKNQVSL  101 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n---~~~i~Gr~v~V~  101 (118)
                      +|+|.+++.+++.++|.++|++||.|.-|.+.++-..|+|-|.+.++|..|+......   ++.|.|..+.+.
T Consensus         3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~   75 (105)
T PF08777_consen    3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE   75 (105)
T ss_dssp             EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred             EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence            7999999999999999999999999999999998899999999999999987655444   677888776554

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>KOG0131|consensus

Probab=98.09  E-value=3.5e-06  Score=65.39  Aligned_cols=78  Identities=12%  Similarity=0.014  Sum_probs=67.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEE-Eec------cCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVL-VLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~-l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      ..+-.|||+||.+++.|..|..+|+.||.+...- +++      .+++||+-+++.|++.+|+..  +|+..+..|++.+
T Consensus        94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s--~ngq~l~nr~itv  171 (203)
T KOG0131|consen   94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS--MNGQYLCNRPITV  171 (203)
T ss_pred             cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH--hccchhcCCceEE
Confidence            5567899999999999999999999999987632 221      378999999999999999876  8999999999999


Q ss_pred             Eeccccc
Q psy9171         101 LISGYRN  107 (118)
Q Consensus       101 ~~S~~~~  107 (118)
                      .|+...+
T Consensus       172 ~ya~k~~  178 (203)
T KOG0131|consen  172 SYAFKKD  178 (203)
T ss_pred             EEEEecC
Confidence            9986544

>KOG4212|consensus

Probab=98.08  E-value=3.2e-06  Score=72.93  Aligned_cols=70  Identities=20%  Similarity=0.099  Sum_probs=62.5

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEe-ccCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL-KGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~-~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      .|+|||||.++|=+.|+.-|-+||.|....++ +++.-+.|-|.++++|+.|..  .+|+..+.||.|.|.|.
T Consensus       538 qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a--~Mngs~l~Gr~I~V~y~  608 (608)
T KOG4212|consen  538 QIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACA--LMNGSRLDGRNIKVTYF  608 (608)
T ss_pred             EEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHH--HhccCcccCceeeeeeC
Confidence            69999999999999999999999999888776 356666999999999999975  48999999999999873

>KOG1456|consensus

Probab=98.07  E-value=9.2e-06  Score=68.97  Aligned_cols=81  Identities=15%  Similarity=0.127  Sum_probs=72.4

Q ss_pred             CCCCCCcEEEeCCCCC-cccHHHHHHhccCCCceeEEEEeccC-ceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          25 SDFKPSRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGK-NQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~-~vte~dL~~Lf~~fG~V~~v~l~~~k-gqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      ....|+.|+-|-.|.. ...-+.|..||+.||+|..+..++.| |-|.|||.|..+-++|+.+  +|...+.|.++.|.+
T Consensus       282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~h--Lnn~~lfG~kl~v~~  359 (494)
T KOG1456|consen  282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTH--LNNIPLFGGKLNVCV  359 (494)
T ss_pred             CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHH--hccCccccceEEEee
Confidence            5668899999999998 46677889999999999999999865 8899999999999999977  889999999999999


Q ss_pred             ccccc
Q psy9171         103 SGYRN  107 (118)
Q Consensus       103 S~~~~  107 (118)
                      |+.-.
T Consensus       360 SkQ~~  364 (494)
T KOG1456|consen  360 SKQNF  364 (494)
T ss_pred             ccccc
Confidence            97643

>KOG0151|consensus

Probab=98.01  E-value=8.3e-06  Score=73.38  Aligned_cols=82  Identities=10%  Similarity=0.008  Sum_probs=70.5

Q ss_pred             CC-CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEe-c--------cCceEEEeecchhhhhcccccccccceeeCCee
Q psy9171          28 KP-SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL-K--------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN   97 (118)
Q Consensus        28 ~P-S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~-~--------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~   97 (118)
                      .| ...||++||++.++|+.|...|..||+|..++++ +        .++-+||-|.+-.+|.+|+..  +++..+.+..
T Consensus       171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~--lqg~iv~~~e  248 (877)
T KOG0151|consen  171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKE--LQGIIVMEYE  248 (877)
T ss_pred             CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHH--hcceeeeeee
Confidence            44 4569999999999999999999999999999887 2        267799999999999999864  8999999999


Q ss_pred             eEEEeccccchHHH
Q psy9171          98 QVSLISGYRNRQSA  111 (118)
Q Consensus        98 v~V~~S~~~~~~~~  111 (118)
                      +++.+++.=.+..+
T Consensus       249 ~K~gWgk~V~ip~~  262 (877)
T KOG0151|consen  249 MKLGWGKAVPIPNI  262 (877)
T ss_pred             eeeccccccccCCc
Confidence            99999976544433

>KOG1457|consensus

Probab=97.95  E-value=4.1e-06  Score=67.09  Aligned_cols=58  Identities=14%  Similarity=0.040  Sum_probs=50.3

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec--cCceEEEeecchhhhhccccccc
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK--GKNQLLLHLEAEIIHLGIPFGRV   87 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~--~kgqAFVEm~~~e~A~~ai~~~~   87 (118)
                      ..+|||-||.++|||++|+.+|+.|..+..+++-.  +..-||++|++.+.|+.|+.+.+
T Consensus       210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lq  269 (284)
T KOG1457|consen  210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQ  269 (284)
T ss_pred             hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhh
Confidence            45899999999999999999999999988887754  34569999999999999986643

>KOG4212|consensus

Probab=97.94  E-value=1.5e-05  Score=68.88  Aligned_cols=75  Identities=17%  Similarity=0.120  Sum_probs=65.7

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhc-cCCCceeEEEEec-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLG-IPFGRVTNVLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf-~~fG~V~~v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      -.|.+||.|||+|+.=+||..|+ +.-|.|.-|.++.     .|+-|.|||.++|.+++|+.-  +|-..+.||++.+.+
T Consensus        43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~--lnk~~~~GR~l~vKE  120 (608)
T KOG4212|consen   43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEK--LNKYEVNGRELVVKE  120 (608)
T ss_pred             ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHH--hhhccccCceEEEec
Confidence            35679999999999999999998 5579999998884     378999999999999999864  899999999999977


Q ss_pred             ccc
Q psy9171         103 SGY  105 (118)
Q Consensus       103 S~~  105 (118)
                      -.-
T Consensus       121 d~d  123 (608)
T KOG4212|consen  121 DHD  123 (608)
T ss_pred             cCc
Confidence            543

>KOG4454|consensus

Probab=97.92  E-value=2.7e-06  Score=67.83  Aligned_cols=75  Identities=17%  Similarity=0.102  Sum_probs=65.4

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccC----ceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGK----NQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~k----gqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      +-.++|||.|+-.+++|+-|.+||.+-|+|.+|.+-.++    .+|||+|+++-+-.-|+.  .+|+..+.|+++.+.+-
T Consensus         7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~--L~ng~~l~~~e~q~~~r   84 (267)
T KOG4454|consen    7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQ--LENGDDLEEDEEQRTLR   84 (267)
T ss_pred             chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhh--hcccchhccchhhcccc
Confidence            447899999999999999999999999999999997542    379999999999888874  48999999999888764


Q ss_pred             c
Q psy9171         104 G  104 (118)
Q Consensus       104 ~  104 (118)
                      .
T Consensus        85 ~   85 (267)
T KOG4454|consen   85 C   85 (267)
T ss_pred             c
Confidence            3

>KOG4209|consensus

Probab=97.85  E-value=1.7e-05  Score=62.71  Aligned_cols=75  Identities=13%  Similarity=-0.004  Sum_probs=65.3

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .+.+.+|++|+...+|-+++...|+.+|.+..+.+..+      ||+||+||.+.+.+..++   .+|+..|.|+.+.+.
T Consensus        99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay---~l~gs~i~~~~i~vt  175 (231)
T KOG4209|consen   99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAY---KLDGSEIPGPAIEVT  175 (231)
T ss_pred             cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHh---hcCCcccccccceee
Confidence            56788999999999999999999999999987777642      789999999999999995   489999999999887


Q ss_pred             eccc
Q psy9171         102 ISGY  105 (118)
Q Consensus       102 ~S~~  105 (118)
                      .-+.
T Consensus       176 ~~r~  179 (231)
T KOG4209|consen  176 LKRT  179 (231)
T ss_pred             eeee
Confidence            6543

>KOG1548|consensus

Probab=97.84  E-value=2.4e-05  Score=65.49  Aligned_cols=77  Identities=13%  Similarity=0.099  Sum_probs=65.0

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCcee--------EEEEecc-----CceEEEeecchhhhhcccccccccceeeCCe
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVT--------NVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK   96 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~--------~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr   96 (118)
                      +..|||+|||.++|-++..++|+.+|.|.        .+.+-..     ||-|++.+--.++-.-|+.  .++...++|+
T Consensus       134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~--ilDe~~~rg~  211 (382)
T KOG1548|consen  134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIK--ILDEDELRGK  211 (382)
T ss_pred             CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHH--HhCcccccCc
Confidence            55699999999999999999999999984        2444432     8999999988888888874  3889999999


Q ss_pred             eeEEEeccccch
Q psy9171          97 NQVSLISGYRNR  108 (118)
Q Consensus        97 ~v~V~~S~~~~~  108 (118)
                      .|.|.-|+.+..
T Consensus       212 ~~rVerAkfq~K  223 (382)
T KOG1548|consen  212 KLRVERAKFQMK  223 (382)
T ss_pred             EEEEehhhhhhc
Confidence            999999987654

>KOG0146|consensus

Probab=97.84  E-value=2.4e-05  Score=64.24  Aligned_cols=76  Identities=16%  Similarity=0.241  Sum_probs=64.1

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccc-eeeCCe--eeEE
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNV-LVLKGK--NQVS  100 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~-~~i~Gr--~v~V  100 (118)
                      -.|.|||+=|...-.|+|++.||++||.+.++.++++     ||=|||.|.+-.+|.+||..  +++ .++-|-  .++|
T Consensus        18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~a--LHgSqTmpGASSSLVV   95 (371)
T KOG0146|consen   18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINA--LHGSQTMPGASSSLVV   95 (371)
T ss_pred             cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHH--hcccccCCCCccceEE
Confidence            5788999999999999999999999999999999964     89999999999999999865  442 334443  7888


Q ss_pred             Eecccc
Q psy9171         101 LISGYR  106 (118)
Q Consensus       101 ~~S~~~  106 (118)
                      .|+...
T Consensus        96 K~ADTd  101 (371)
T KOG0146|consen   96 KFADTD  101 (371)
T ss_pred             Eeccch
Confidence            888653

>KOG0106|consensus

Probab=97.84  E-value=1.3e-05  Score=63.16  Aligned_cols=65  Identities=17%  Similarity=0.092  Sum_probs=59.3

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      ++.+.|++-++..++|...|+++|.+.++.+  .+++|||+|...++|..|+.-  +++..+.|+.+.+
T Consensus       101 r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~--l~~~~~~~~~l~~  165 (216)
T KOG0106|consen  101 RLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEK--LDGKKLNGRRISV  165 (216)
T ss_pred             eeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchh--ccchhhcCceeee
Confidence            6889999999999999999999999977766  679999999999999999854  8899999999988

>KOG1457|consensus

Probab=97.68  E-value=0.00011  Score=59.08  Aligned_cols=75  Identities=17%  Similarity=0.188  Sum_probs=62.6

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEe-cc------CceEEEeecchhhhhcccccccccceeeC---CeeeE
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL-KG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLK---GKNQV   99 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~-~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~---Gr~v~   99 (118)
                      =|+|||.+||.|+..-||..||-+|-......+- .+      +..||+.|.+..+|.+|...  +||..++   |.++.
T Consensus        34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamna--LNGvrFDpE~~stLh  111 (284)
T KOG1457|consen   34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNA--LNGVRFDPETGSTLH  111 (284)
T ss_pred             cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHH--hcCeeeccccCceeE
Confidence            4689999999999999999999999888766663 33      35799999999999999744  8888875   67888


Q ss_pred             EEecccc
Q psy9171         100 SLISGYR  106 (118)
Q Consensus       100 V~~S~~~  106 (118)
                      +.++++-
T Consensus       112 iElAKSN  118 (284)
T KOG1457|consen  112 IELAKSN  118 (284)
T ss_pred             eeehhcC
Confidence            8888763

>KOG4211|consensus

Probab=97.64  E-value=0.00011  Score=63.62  Aligned_cols=74  Identities=12%  Similarity=0.093  Sum_probs=58.8

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEE-Eecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVL-VLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~-l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .+.-||-+|.||+.|||+|+.+.|+.--.|.+-. ++.+     .+.|||+|++.+.|+.|+.   -+.-.|.-|=|.|-
T Consensus       101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~---rhre~iGhRYIEvF  177 (510)
T KOG4211|consen  101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG---RHRENIGHRYIEVF  177 (510)
T ss_pred             CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH---HHHHhhccceEEee
Confidence            5677999999999999999999999998888733 3322     4889999999999999953   34555666667776


Q ss_pred             ecc
Q psy9171         102 ISG  104 (118)
Q Consensus       102 ~S~  104 (118)
                      -|.
T Consensus       178 ~Ss  180 (510)
T KOG4211|consen  178 RSS  180 (510)
T ss_pred             hhH
Confidence            663

>KOG0120|consensus

Probab=97.57  E-value=4.7e-05  Score=66.22  Aligned_cols=69  Identities=20%  Similarity=0.179  Sum_probs=64.1

Q ss_pred             EEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      ++|++||...++.++.++.+.||.+..+.++.      .|++||.|+.|......|+.+  +|+..+.|+++.++.|
T Consensus       292 i~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~ag--LnGm~lgd~~lvvq~A  366 (500)
T KOG0120|consen  292 IFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAG--LNGMQLGDKKLVVQRA  366 (500)
T ss_pred             hhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcc--cchhhhcCceeEeehh
Confidence            89999999999999999999999999998875      389999999999999999877  9999999999999876

>KOG4211|consensus

Probab=97.47  E-value=0.00018  Score=62.48  Aligned_cols=72  Identities=13%  Similarity=0.122  Sum_probs=54.9

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      +-...|-+|.|||.+|++||+..|+.-+ |.++.+..    ..|.|||||.++|++..|++   .+--.+.-|=|.|--+
T Consensus         8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk---kdR~~mg~RYIEVf~~   83 (510)
T KOG4211|consen    8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK---KDRESMGHRYIEVFTA   83 (510)
T ss_pred             CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH---hhHHHhCCceEEEEcc
Confidence            3456799999999999999999999886 57776654    25899999999999999964   3444444455555443

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=97.44  E-value=0.00043  Score=48.32  Aligned_cols=80  Identities=14%  Similarity=0.084  Sum_probs=57.8

Q ss_pred             EEEeCCCCCcccHHHHHHhccCC--CceeEEEEec------cCceEEEeecchhhhhcccccccccceeeC----CeeeE
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPF--GRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLK----GKNQV   99 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~f--G~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~----Gr~v~   99 (118)
                      +|-|||||...|.++|.+++...  |..-=+-+.-      ..|+|||-|-+.+.|......  .++..+.    .|...
T Consensus         3 TvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~--f~g~~w~~~~s~Kvc~   80 (97)
T PF04059_consen    3 TVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKA--FNGKKWPNFNSKKVCE   80 (97)
T ss_pred             eEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHH--HcCCccccCCCCcEEE
Confidence            68899999999999998876443  4433233321      379999999999999877543  4455543    67889


Q ss_pred             EEeccccchHHHHH
Q psy9171         100 SLISGYRNRQSAAL  113 (118)
Q Consensus       100 V~~S~~~~~~~~~~  113 (118)
                      +.||+-|-.+..++
T Consensus        81 i~yAriQG~~alv~   94 (97)
T PF04059_consen   81 ISYARIQGKDALVE   94 (97)
T ss_pred             EehhHhhCHHHHHH
Confidence            99998877665543

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>KOG1855|consensus

Probab=97.33  E-value=0.00012  Score=62.83  Aligned_cols=57  Identities=19%  Similarity=0.179  Sum_probs=50.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-------------------CceEEEeecchhhhhcccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-------------------KNQLLLHLEAEIIHLGIPF   84 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-------------------kgqAFVEm~~~e~A~~ai~   84 (118)
                      -||++|.+.|||.+-.-+.|..||+.+|.|.++++++-                   +--||||++..++|..|..
T Consensus       229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e  304 (484)
T KOG1855|consen  229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE  304 (484)
T ss_pred             cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence            38999999999998777999999999999999999742                   2349999999999999854

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=97.25  E-value=0.00067  Score=42.09  Aligned_cols=53  Identities=17%  Similarity=0.281  Sum_probs=43.7

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhccc
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIP   83 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai   83 (118)
                      ++.|-|.+.|++..+. ++..|..||.|.++.+-..++.++|.|.+..+|.+|+
T Consensus         1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen    1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence            3567788888876654 4557778999999998877899999999999999884

>KOG3152|consensus

Probab=97.03  E-value=0.00019  Score=58.17  Aligned_cols=65  Identities=18%  Similarity=0.240  Sum_probs=55.9

Q ss_pred             cEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc----------------C--ceEEEeecchhhhhccccccccccee
Q psy9171          31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG----------------K--NQLLLHLEAEIIHLGIPFGRVTNVLV   92 (118)
Q Consensus        31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~----------------k--gqAFVEm~~~e~A~~ai~~~~~n~~~   92 (118)
                      =|||++|||+...-.-|++++++||.|-.|-+-+.                +  ..++|||.+...|..+..  .+|+-.
T Consensus        75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe--~Lnn~~  152 (278)
T KOG3152|consen   75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAE--LLNNTP  152 (278)
T ss_pred             eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHH--HhCCCc
Confidence            38999999999999999999999999999988641                1  238999999999999965  488999


Q ss_pred             eCCee
Q psy9171          93 LKGKN   97 (118)
Q Consensus        93 i~Gr~   97 (118)
                      |.||.
T Consensus       153 Iggkk  157 (278)
T KOG3152|consen  153 IGGKK  157 (278)
T ss_pred             cCCCC
Confidence            99885

>KOG1996|consensus

Probab=96.97  E-value=0.0005  Score=57.09  Aligned_cols=73  Identities=21%  Similarity=0.301  Sum_probs=58.3

Q ss_pred             CCCcEEEeCCCCC--ccc---HHHHHHhccCCCceeEEEEeccCc-------eEEEeecchhhhhcccccccccceeeCC
Q psy9171          28 KPSRVIHIRNIPN--EVT---EAEIIHLGIPFGRVTNVLVLKGKN-------QLLLHLEAEIIHLGIPFGRVTNVLVLKG   95 (118)
Q Consensus        28 ~PS~vL~V~NLP~--~vt---e~dL~~Lf~~fG~V~~v~l~~~kg-------qAFVEm~~~e~A~~ai~~~~~n~~~i~G   95 (118)
                      -|++||.+||.=.  ++.   |+++.+-++.||+|.+|.+...-+       --||||+..++|+.|+..  +|+..+.|
T Consensus       279 ~ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vd--lnGRyFGG  356 (378)
T KOG1996|consen  279 CPTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVD--LNGRYFGG  356 (378)
T ss_pred             cchHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHh--cCCceecc
Confidence            4788899998753  222   455677899999999999975322       269999999999999865  99999999


Q ss_pred             eeeEEEe
Q psy9171          96 KNQVSLI  102 (118)
Q Consensus        96 r~v~V~~  102 (118)
                      |.+.-.|
T Consensus       357 r~v~A~F  363 (378)
T KOG1996|consen  357 RVVSACF  363 (378)
T ss_pred             eeeehee
Confidence            9987665

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=96.87  E-value=0.0017  Score=44.93  Aligned_cols=68  Identities=13%  Similarity=0.119  Sum_probs=45.9

Q ss_pred             EEEeCCCCCcccHHH----HHHhccCCC-ceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          32 VIHIRNIPNEVTEAE----IIHLGIPFG-RVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        32 vL~V~NLP~~vte~d----L~~Lf~~fG-~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      .|+|.|||.+.....    |.+|+...| +|.++    ..+-|.|-|.+.+.|..|.+  -+++=.+.|+.|.+.|+..
T Consensus         4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~K--RmegEdVfG~kI~v~~~~~   76 (90)
T PF11608_consen    4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQK--RMEGEDVFGNKISVSFSPK   76 (90)
T ss_dssp             EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHH--HHTT--SSSS--EEESS--
T ss_pred             EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHH--hhcccccccceEEEEEcCC
Confidence            699999999766544    577888885 45554    25889999999999999974  4889999999999999943

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=96.76  E-value=0.0017  Score=55.02  Aligned_cols=73  Identities=12%  Similarity=0.175  Sum_probs=60.6

Q ss_pred             EEEeCCCCCcccHHHH------HHhccCCCceeEEEEecc-------CceE--EEeecchhhhhcccccccccceeeCCe
Q psy9171          32 VIHIRNIPNEVTEAEI------IHLGIPFGRVTNVLVLKG-------KNQL--LLHLEAEIIHLGIPFGRVTNVLVLKGK   96 (118)
Q Consensus        32 vL~V~NLP~~vte~dL------~~Lf~~fG~V~~v~l~~~-------kgqA--FVEm~~~e~A~~ai~~~~~n~~~i~Gr   96 (118)
                      .+||-.||+.+-.+++      .+.|.+||+|.++.+-+.       -+.+  +|.|.+.|+|.+||..  .++..++||
T Consensus       116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~--vDgs~~DGr  193 (480)
T COG5175         116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAE--VDGSLLDGR  193 (480)
T ss_pred             eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHH--hccccccCc
Confidence            4799999999888874      468999999999988643       2334  9999999999999964  789999999


Q ss_pred             eeEEEecccc
Q psy9171          97 NQVSLISGYR  106 (118)
Q Consensus        97 ~v~V~~S~~~  106 (118)
                      -++-.|-+.+
T Consensus       194 ~lkatYGTTK  203 (480)
T COG5175         194 VLKATYGTTK  203 (480)
T ss_pred             eEeeecCchH
Confidence            9998887653

>KOG4210|consensus

Probab=96.66  E-value=0.0013  Score=53.33  Aligned_cols=88  Identities=11%  Similarity=0.034  Sum_probs=69.2

Q ss_pred             eeeccCC-CCCCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccc
Q psy9171          16 VQAKLDR-QKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVT   88 (118)
Q Consensus        16 ~~~~~~~-~~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~   88 (118)
                      ++.+.+. +....++....++.|++..+++++|...|..+|.|..+++...      +++|++++.+...+..++..   
T Consensus       170 ~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~---  246 (285)
T KOG4210|consen  170 LRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND---  246 (285)
T ss_pred             ccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc---
Confidence            4444553 3344344444459999999999999999999999999999753      79999999999999998642   


Q ss_pred             cceeeCCeeeEEEecccc
Q psy9171          89 NVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        89 n~~~i~Gr~v~V~~S~~~  106 (118)
                      +...+.|+++.+.+...+
T Consensus       247 ~~~~~~~~~~~~~~~~~~  264 (285)
T KOG4210|consen  247 QTRSIGGRPLRLEEDEPR  264 (285)
T ss_pred             ccCcccCcccccccCCCC
Confidence            367788899988887765

>KOG0147|consensus

Probab=96.61  E-value=0.00066  Score=59.53  Aligned_cols=72  Identities=13%  Similarity=0.056  Sum_probs=63.5

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      -+++|+-.|+-..++.||.++|+.+|+|..|+++.+      ||-|+|||.|+++-..||.   ++|..+.|-+|.++-+
T Consensus       179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia---LsGqrllg~pv~vq~s  255 (549)
T KOG0147|consen  179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA---LSGQRLLGVPVIVQLS  255 (549)
T ss_pred             HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh---hcCCcccCceeEeccc
Confidence            357888889999999999999999999999999964      7889999999999888873   7899999999988866


Q ss_pred             c
Q psy9171         104 G  104 (118)
Q Consensus       104 ~  104 (118)
                      .
T Consensus       256 E  256 (549)
T KOG0147|consen  256 E  256 (549)
T ss_pred             H
Confidence            4

>KOG0129|consensus

Probab=96.50  E-value=0.0034  Score=54.91  Aligned_cols=61  Identities=23%  Similarity=0.190  Sum_probs=48.1

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCcee-EEE-------EeccCc---eEEEeecchhhhhcccccccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVT-NVL-------VLKGKN---QLLLHLEAEIIHLGIPFGRVT   88 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~-~v~-------l~~~kg---qAFVEm~~~e~A~~ai~~~~~   88 (118)
                      .-|+.|||+.||++++|++|..-|.+||.+. +--       -.+-+|   ++|+-|+++.+....+..|..
T Consensus       257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~  328 (520)
T KOG0129|consen  257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE  328 (520)
T ss_pred             ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence            4488999999999999999999999999863 110       011267   999999999998877766553

>KOG4307|consensus

Probab=96.36  E-value=0.0085  Score=54.59  Aligned_cols=69  Identities=13%  Similarity=0.181  Sum_probs=60.4

Q ss_pred             cEEEeCCCCCcccHHHHHHhccCCCceeEEEEec--c----CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK--G----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~--~----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      +||-++|+|.+++-+|+.+.|.-|-..-+-.+++  +    .|.|-|-|++.++|.+|...  ++.-.|+.|.|++.
T Consensus       868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~d--l~~~~i~nr~V~l~  942 (944)
T KOG4307|consen  868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMD--LDGQKIRNRVVSLR  942 (944)
T ss_pred             eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhc--cccCcccceeEEEE
Confidence            3999999999999999999999998887666664  1    58899999999999999754  88999999998875

>KOG1365|consensus

Probab=96.21  E-value=0.0074  Score=51.83  Aligned_cols=54  Identities=15%  Similarity=0.219  Sum_probs=44.4

Q ss_pred             cEEEeCCCCCcccHHHHHHhccC---C-CceeEEEEecc-----CceEEEeecchhhhhcccc
Q psy9171          31 RVIHIRNIPNEVTEAEIIHLGIP---F-GRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPF   84 (118)
Q Consensus        31 ~vL~V~NLP~~vte~dL~~Lf~~---f-G~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~   84 (118)
                      ..+..|+||+++|+.|+.+.|.|   . |....++.++.     .|.|||.|+.+++|..|+.
T Consensus       162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~  224 (508)
T KOG1365|consen  162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR  224 (508)
T ss_pred             eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH
Confidence            35889999999999999999954   3 35567777742     5899999999999999863

>KOG0128|consensus

Probab=96.16  E-value=0.0025  Score=58.49  Aligned_cols=71  Identities=18%  Similarity=0.127  Sum_probs=58.3

Q ss_pred             cEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      ..++|+|.|...|.++|..++..+|++.+++++.     .||-|+++++++.+|.+++..  .+...++-+.+.++-|
T Consensus       737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s--~d~~~~rE~~~~v~vs  812 (881)
T KOG0128|consen  737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVAS--VDVAGKRENNGEVQVS  812 (881)
T ss_pred             hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhccc--chhhhhhhcCcccccc
Confidence            3589999999999999999999999999998764     278999999999999999754  4455566555555543

>KOG4574|consensus

Probab=96.04  E-value=0.0029  Score=58.29  Aligned_cols=76  Identities=12%  Similarity=0.077  Sum_probs=65.0

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      -+..++.|.+-..|..-|..||+.||.|.+...+++-+.|.|+|.+.++|..|....+-......|-|.+|.||+-
T Consensus       298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~  373 (1007)
T KOG4574|consen  298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT  373 (1007)
T ss_pred             cchhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence            4455667777788888899999999999999999999999999999999999977655446778899999999975

>KOG2416|consensus

Probab=95.94  E-value=0.0034  Score=56.09  Aligned_cols=87  Identities=15%  Similarity=0.072  Sum_probs=65.0

Q ss_pred             eeeccCCCCCCCCCCcEEEeCCCCCcccHHHHHHhccC-CCceeEEEEeccCceEEEeecchhhhhccccccccccee--
Q psy9171          16 VQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIP-FGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLV--   92 (118)
Q Consensus        16 ~~~~~~~~~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~-fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~--   92 (118)
                      ++.+.++-+ -..+|.||||+||-.-.|..+|..|.+. -|.|..+-|-+-|..+||-+.++++|.+-...  ++++.  
T Consensus       431 ~~~RvpSPs-R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~A--lhnV~WP  507 (718)
T KOG2416|consen  431 PKERVPSPS-RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREA--LHNVQWP  507 (718)
T ss_pred             ccccCCCCC-CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHH--HhccccC
Confidence            445555433 5588999999999999999999999985 55556662223489999999999999876543  44443  


Q ss_pred             -eCCeeeEEEeccc
Q psy9171          93 -LKGKNQVSLISGY  105 (118)
Q Consensus        93 -i~Gr~v~V~~S~~  105 (118)
                       =++|.|-+.|.+.
T Consensus       508 ~sNPK~L~adf~~~  521 (718)
T KOG2416|consen  508 PSNPKHLIADFVRA  521 (718)
T ss_pred             CCCCceeEeeecch
Confidence             4778888888754

>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN)

Probab=95.90  E-value=0.019  Score=39.63  Aligned_cols=51  Identities=20%  Similarity=0.288  Sum_probs=37.9

Q ss_pred             cEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccc
Q psy9171          31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPF   84 (118)
Q Consensus        31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~   84 (118)
                      -|.|+. .|.+....||.+||+|||.|.=- -+ +-..|||-..+.+.|..++.
T Consensus        10 HVFhlt-FPkeWK~~DI~qlFspfG~I~Vs-Wi-~dTSAfV~l~~r~~~~~v~~   60 (87)
T PF08675_consen   10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVS-WI-NDTSAFVALHNRDQAKVVMN   60 (87)
T ss_dssp             CEEEEE---TT--HHHHHHHCCCCCCEEEE-EE-CTTEEEEEECCCHHHHHHHH
T ss_pred             eEEEEe-CchHhhhhhHHHHhccCCcEEEE-EE-cCCcEEEEeecHHHHHHHHH
Confidence            368888 99999999999999999997422 22 44789999999999987754

; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=95.88  E-value=0.016  Score=43.39  Aligned_cols=75  Identities=9%  Similarity=0.107  Sum_probs=51.2

Q ss_pred             CCCCCcEEEeCCCC----C-cccHH----HHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCe
Q psy9171          26 DFKPSRVIHIRNIP----N-EVTEA----EIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK   96 (118)
Q Consensus        26 ~~~PS~vL~V~NLP----~-~vte~----dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr   96 (118)
                      -.||.-++-|+=+.    . ..-.+    +|.+.|.+||.|.-++.+.  +.-+|.|.+-.+|.+|+   .+++..+.|+
T Consensus        23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaal---s~dg~~v~g~   97 (146)
T PF08952_consen   23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAAL---SLDGIQVNGR   97 (146)
T ss_dssp             ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHH---HGCCSEETTE
T ss_pred             cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHH---ccCCcEECCE
Confidence            34676665544333    2 23333    6678899999998888875  57899999999999996   3889999999


Q ss_pred             eeEEEeccc
Q psy9171          97 NQVSLISGY  105 (118)
Q Consensus        97 ~v~V~~S~~  105 (118)
                      .+.+.--+.
T Consensus        98 ~l~i~LKtp  106 (146)
T PF08952_consen   98 TLKIRLKTP  106 (146)
T ss_dssp             EEEEEE---
T ss_pred             EEEEEeCCc
Confidence            999987654

; PDB: 1UFW_A 2DNR_A.

>KOG1548|consensus

Probab=95.80  E-value=0.012  Score=49.74  Aligned_cols=71  Identities=13%  Similarity=0.151  Sum_probs=56.5

Q ss_pred             CCcEEEeCCCCC----ccc-------HHHHHHhccCCCceeEEEEe--ccCceEEEeecchhhhhcccccccccceeeCC
Q psy9171          29 PSRVIHIRNIPN----EVT-------EAEIIHLGIPFGRVTNVLVL--KGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKG   95 (118)
Q Consensus        29 PS~vL~V~NLP~----~vt-------e~dL~~Lf~~fG~V~~v~l~--~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G   95 (118)
                      ..++|-++|+=.    +.+       ++||.+=++.||.|.+|.+.  ...|-+-|.|.+.++|..||..  ++|..+.|
T Consensus       264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~--m~GR~fdg  341 (382)
T KOG1548|consen  264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQT--MDGRWFDG  341 (382)
T ss_pred             CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHH--hcCeeecc
Confidence            356788888732    222       44556679999999999998  4578999999999999999965  89999999


Q ss_pred             eeeEEE
Q psy9171          96 KNQVSL  101 (118)
Q Consensus        96 r~v~V~  101 (118)
                      |.|.-.
T Consensus       342 Rql~A~  347 (382)
T KOG1548|consen  342 RQLTAS  347 (382)
T ss_pred             eEEEEE
Confidence            988543

>KOG0129|consensus

Probab=95.45  E-value=0.026  Score=49.51  Aligned_cols=63  Identities=17%  Similarity=0.223  Sum_probs=54.1

Q ss_pred             CCCCCCCcEEEeCCCCCcccHHHHHHhcc-CCCceeEEEEecc------CceEEEeecchhhhhcccccc
Q psy9171          24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGI-PFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGR   86 (118)
Q Consensus        24 ~~~~~PS~vL~V~NLP~~vte~dL~~Lf~-~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~   86 (118)
                      ..++.|.|||||+.||.-+|-+||..+++ .||.|.-+-+-++      ||-|-|.|.+..+=.+||...
T Consensus       364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar  433 (520)
T KOG0129|consen  364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR  433 (520)
T ss_pred             CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence            46679999999999999999999999998 8999998888654      788899998888877776543

>KOG1365|consensus

Probab=95.36  E-value=0.009  Score=51.32  Aligned_cols=70  Identities=13%  Similarity=0.191  Sum_probs=50.8

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeE---EEEe-c--c--CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTN---VLVL-K--G--KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~---v~l~-~--~--kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      .|.+|+||++.|.+|+...|..|-.-..   |.|+ +  +  .|.|||||.+.|.|.+|...+..  -..++|=+.|-=+
T Consensus       282 cvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk--~~mk~RYiEvfp~  359 (508)
T KOG1365|consen  282 CVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHK--KLMKSRYIEVFPC  359 (508)
T ss_pred             eeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHH--hhcccceEEEeec
Confidence            5999999999999999999888765432   3333 2  2  58899999999999999655442  2236666655444

>KOG4676|consensus

Probab=95.32  E-value=0.037  Score=47.58  Aligned_cols=82  Identities=13%  Similarity=0.106  Sum_probs=63.1

Q ss_pred             cEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc---------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG---------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~---------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .||+|-||.+.+|.+++..||...|+|..+.+++.         ..-+||-|.|...+..|-  ..+|-..|.---+++-
T Consensus         8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ--hLtntvfvdraliv~p   85 (479)
T KOG4676|consen    8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ--HLTNTVFVDRALIVRP   85 (479)
T ss_pred             ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh--hhccceeeeeeEEEEe
Confidence            39999999999999999999999999999999862         456999999999988883  3466666666566666


Q ss_pred             eccccchHHHHHh
Q psy9171         102 ISGYRNRQSAALM  114 (118)
Q Consensus       102 ~S~~~~~~~~~~~  114 (118)
                      |..----.+.|+-
T Consensus        86 ~~~~~~p~r~af~   98 (479)
T KOG4676|consen   86 YGDEVIPDRFAFV   98 (479)
T ss_pred             cCCCCCccHHHHH
Confidence            6544333343433

>KOG0226|consensus

Probab=95.24  E-value=0.0069  Score=49.38  Aligned_cols=76  Identities=14%  Similarity=0.099  Sum_probs=65.1

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      -||-+.|..+++++-|...|..|-.+...+.+++      ||++||.|.|.+++..|+  +++||--+..|++.+.-|..
T Consensus       192 RIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAm--rem~gkyVgsrpiklRkS~w  269 (290)
T KOG0226|consen  192 RIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAM--REMNGKYVGSRPIKLRKSEW  269 (290)
T ss_pred             eeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHH--HhhcccccccchhHhhhhhH
Confidence            4888999999999999999999998887777753      799999999999999997  56999999999998877665


Q ss_pred             cchH
Q psy9171         106 RNRQ  109 (118)
Q Consensus       106 ~~~~  109 (118)
                      +-||
T Consensus       270 keRn  273 (290)
T KOG0226|consen  270 KERN  273 (290)
T ss_pred             Hhhh
Confidence            4443

>KOG4307|consensus

Probab=94.93  E-value=0.068  Score=48.94  Aligned_cols=75  Identities=17%  Similarity=0.240  Sum_probs=60.9

Q ss_pred             cEEEeCCCCCcccHHHHHHhccCC----CceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          31 RVIHIRNIPNEVTEAEIIHLGIPF----GRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        31 ~vL~V~NLP~~vte~dL~~Lf~~f----G~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      -+|.+.|||+..---|++..|+-.    |.   |.++.+ -|.|||-|.+.|+|.-|+.   .+...|+|-.|++..|..
T Consensus         3 VIIRLqnLP~tAga~DIR~FFSGL~IPdGg---VHIIGGe~GeaFI~FsTDeDARlaM~---kdr~~i~g~~VrLlLSSk   76 (944)
T KOG4307|consen    3 VIIRLQNLPMTAGASDIRTFFSGLKIPDGG---VHIIGGEEGEAFIGFSTDEDARLAMT---KDRLMIHGAEVRLLLSSK   76 (944)
T ss_pred             eEEEecCCcccccchHHHHhhcccccCCCc---eEEecccccceEEEecccchhhhhhh---hcccceecceEEEEeccH
Confidence            478999999999999999998744    54   455553 6999999999999998863   569999999999999966


Q ss_pred             cchHHH
Q psy9171         106 RNRQSA  111 (118)
Q Consensus       106 ~~~~~~  111 (118)
                      .--|..
T Consensus        77 sEmq~v   82 (944)
T KOG4307|consen   77 SEMQSV   82 (944)
T ss_pred             HHHHHH
Confidence            544443

>KOG1995|consensus

Probab=94.74  E-value=0.028  Score=47.24  Aligned_cols=79  Identities=11%  Similarity=0.068  Sum_probs=64.2

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeE--------EEEec------cCceEEEeecchhhhhcccccccccceee
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN--------VLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVL   93 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~--------v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i   93 (118)
                      .-.-++||.+||..++++++...|.+.|.|..        +.+-+      .|+.|.|.++|..+|++|+..  .+...+
T Consensus        64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~--~agkdf  141 (351)
T KOG1995|consen   64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEW--FAGKDF  141 (351)
T ss_pred             cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhh--hccccc
Confidence            34557999999999999999999999998831        11111      289999999999999999976  668888


Q ss_pred             CCeeeEEEeccccch
Q psy9171          94 KGKNQVSLISGYRNR  108 (118)
Q Consensus        94 ~Gr~v~V~~S~~~~~  108 (118)
                      .|-++.|..+..++.
T Consensus       142 ~gn~ikvs~a~~r~~  156 (351)
T KOG1995|consen  142 CGNTIKVSLAERRTG  156 (351)
T ss_pred             cCCCchhhhhhhccC
Confidence            888888888877654

>KOG2314|consensus

Probab=94.54  E-value=0.043  Score=49.04  Aligned_cols=64  Identities=13%  Similarity=0.029  Sum_probs=49.7

Q ss_pred             CcEEEeCCCCC--cccHH----HHHHhccCCCceeEEEEec-----cCceEEEeecchhhhhcccccccccceeeCC
Q psy9171          30 SRVIHIRNIPN--EVTEA----EIIHLGIPFGRVTNVLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKG   95 (118)
Q Consensus        30 S~vL~V~NLP~--~vte~----dL~~Lf~~fG~V~~v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G   95 (118)
                      ..+|.|-|+|-  ...-+    -|..+|+.+|++.|+.+..     .+|++|+|+++..+|..|++.  +||-.+.-
T Consensus        58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~--l~G~~ldk  132 (698)
T KOG2314|consen   58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKS--LNGKRLDK  132 (698)
T ss_pred             ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHh--cccceecc
Confidence            45899999996  22222    2356899999999999973     289999999999999999965  77655543

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=94.49  E-value=0.15  Score=35.64  Aligned_cols=68  Identities=10%  Similarity=0.135  Sum_probs=50.1

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEE-------------EeccCceEEEeecchhhhhcccccccccceeeCCee-
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVL-------------VLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN-   97 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~-------------l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~-   97 (118)
                      -|.|=+-|+. .-..+++.|+.||.|++..             ...+.|---|.|++..+|.+|+.   .|+..+.|.- 
T Consensus         8 wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~---~NG~i~~g~~m   83 (100)
T PF05172_consen    8 WVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ---KNGTIFSGSLM   83 (100)
T ss_dssp             EEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT---TTTEEETTCEE
T ss_pred             EEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH---hCCeEEcCcEE
Confidence            4666677776 6678899999999999885             44567889999999999999974   7899998864 


Q ss_pred             eEEEec
Q psy9171          98 QVSLIS  103 (118)
Q Consensus        98 v~V~~S  103 (118)
                      +-|-+.
T Consensus        84 vGV~~~   89 (100)
T PF05172_consen   84 VGVKPC   89 (100)
T ss_dssp             EEEEE-
T ss_pred             EEEEEc
Confidence            446666

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>KOG0120|consensus

Probab=94.18  E-value=0.087  Score=46.24  Aligned_cols=70  Identities=17%  Similarity=0.202  Sum_probs=54.8

Q ss_pred             CCCcEEEeCCCCCcccHHHH-------------HHhccCCCceeEEEEec---------cCceEEEeecchhhhhccccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEI-------------IHLGIPFGRVTNVLVLK---------GKNQLLLHLEAEIIHLGIPFG   85 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL-------------~~Lf~~fG~V~~v~l~~---------~kgqAFVEm~~~e~A~~ai~~   85 (118)
                      .|.+||-+-|+   +|++||             ..=|+.||.|.++.+-.         +-|--||||.+.++++.|...
T Consensus       397 ~~t~Vl~L~n~---Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~  473 (500)
T KOG0120|consen  397 IPTEVLCLTNV---VTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEE  473 (500)
T ss_pred             Ccchhhhhhhc---CCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHH
Confidence            77777777665   333333             34589999999998853         256689999999999999765


Q ss_pred             ccccceeeCCeeeEEEe
Q psy9171          86 RVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        86 ~~~n~~~i~Gr~v~V~~  102 (118)
                        ++|..+.||.|+-.|
T Consensus       474 --L~GrKF~nRtVvtsY  488 (500)
T KOG0120|consen  474 --LTGRKFANRTVVASY  488 (500)
T ss_pred             --ccCceeCCcEEEEEe
Confidence              899999999998776

>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells

Probab=93.95  E-value=0.13  Score=39.48  Aligned_cols=64  Identities=13%  Similarity=-0.033  Sum_probs=47.6

Q ss_pred             cHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhccccccccc--ceeeCCeeeEEEeccccch
Q psy9171          43 TEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTN--VLVLKGKNQVSLISGYRNR  108 (118)
Q Consensus        43 te~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n--~~~i~Gr~v~V~~S~~~~~  108 (118)
                      ..+.|.++|..|+.+..+..++.-+-..|.|.+.++|..|-..  ++  +..+.|..+++.|+....+
T Consensus         8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~--l~~~~~~~~g~~l~~yf~~~~~~   73 (184)
T PF04847_consen    8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQL--LHWDGTSFNGKRLRVYFGQPTPI   73 (184)
T ss_dssp             -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHT--ST--TSEETTEE-EEE----SS-
T ss_pred             hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHH--hcccccccCCCceEEEEcccccc
Confidence            4578899999999999999999888899999999999999543  55  8899999999999976665

Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.

>KOG2202|consensus

Probab=93.87  E-value=0.016  Score=46.92  Aligned_cols=59  Identities=12%  Similarity=0.064  Sum_probs=47.7

Q ss_pred             ccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccccchHHH
Q psy9171          51 GIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRNRQSA  111 (118)
Q Consensus        51 f~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~~~~~~  111 (118)
                      -..||.|.++.+-.+     +|-++|.|..+|+|.+|+..  +|+.++.|++|.-.++-=..-.|+
T Consensus        90 ~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~--lnnRw~~G~pi~ae~~pvT~~rea  153 (260)
T KOG2202|consen   90 EDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALED--LNNRWYNGRPIHAELSPVTDFREA  153 (260)
T ss_pred             HHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHH--HcCccccCCcceeeecCcCchhhh
Confidence            348999999866543     68899999999999999865  999999999999988855444443

>KOG2193|consensus

Probab=93.55  E-value=0.047  Score=47.56  Aligned_cols=72  Identities=14%  Similarity=-0.057  Sum_probs=56.2

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhccccccccc-ceeeCCeeeEEEeccc
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTN-VLVLKGKNQVSLISGY  105 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n-~~~i~Gr~v~V~~S~~  105 (118)
                      .+|++||.+.++..||.++|..----.+=..+...|+||+...|..-|..++..  ++ ...+.|+++.+.+|-.
T Consensus         3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~--~sgk~elqGkr~e~~~sv~   75 (584)
T KOG2193|consen    3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIET--LSGKVELQGKRQEVEHSVP   75 (584)
T ss_pred             cccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHh--hchhhhhcCceeeccchhh
Confidence            489999999999999999997652212222233469999999999999999764  33 7889999999998844

>KOG0115|consensus

Probab=92.03  E-value=0.072  Score=43.40  Aligned_cols=69  Identities=6%  Similarity=-0.033  Sum_probs=52.0

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-c----CceEEEeecchhhhhccccccccc--ceeeCCeee
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-G----KNQLLLHLEAEIIHLGIPFGRVTN--VLVLKGKNQ   98 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-~----kgqAFVEm~~~e~A~~ai~~~~~n--~~~i~Gr~v   98 (118)
                      ...|||.||+..++-+.|.+-|+.||.|..-++.. +    .+..+|++...-.|..|...+...  +...-|++.
T Consensus        31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~  106 (275)
T KOG0115|consen   31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPV  106 (275)
T ss_pred             cceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCcc
Confidence            46799999999999999999999999997655543 2    356899999998888886654333  333444443

>KOG4849|consensus

Probab=90.97  E-value=0.12  Score=44.22  Aligned_cols=71  Identities=14%  Similarity=0.079  Sum_probs=51.8

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCc--eeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCe-eeEEEe
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGR--VTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK-NQVSLI  102 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~--V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr-~v~V~~  102 (118)
                      .+||+||-|-+|++||.+..+.-|.  +.+++...      .||+|+|...++.+..+.+.-  +---+|.|. +++..|
T Consensus        82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~Mei--LP~k~iHGQ~P~V~~~  159 (498)
T KOG4849|consen   82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEI--LPTKTIHGQSPTVLSY  159 (498)
T ss_pred             EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHh--cccceecCCCCeeecc
Confidence            4899999999999999887776664  23333332      289999999999888877542  446678888 555555


Q ss_pred             cc
Q psy9171         103 SG  104 (118)
Q Consensus       103 S~  104 (118)
                      -+
T Consensus       160 NK  161 (498)
T KOG4849|consen  160 NK  161 (498)
T ss_pred             ch
Confidence            43

>KOG2591|consensus

Probab=89.54  E-value=0.39  Score=43.11  Aligned_cols=77  Identities=14%  Similarity=0.168  Sum_probs=58.1

Q ss_pred             CCCCCCCCCCc---EEEeCCCCCcccHHHHHHhccC--CCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCC
Q psy9171          21 DRQKSDFKPSR---VIHIRNIPNEVTEAEIIHLGIP--FGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKG   95 (118)
Q Consensus        21 ~~~~~~~~PS~---vL~V~NLP~~vte~dL~~Lf~~--fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G   95 (118)
                      |++-+...|+.   ++.+|.||..+.++++..||.-  ..++.++....+ .-=||.|+++++|..|.++...---+|.|
T Consensus       163 DekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-~nWyITfesd~DAQqAykylreevk~fqg  241 (684)
T KOG2591|consen  163 DEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-DNWYITFESDTDAQQAYKYLREEVKTFQG  241 (684)
T ss_pred             ccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-CceEEEeecchhHHHHHHHHHHHHHhhcC
Confidence            44445555543   5889999999999999999954  788888887643 33699999999999997654444556778


Q ss_pred             eee
Q psy9171          96 KNQ   98 (118)
Q Consensus        96 r~v   98 (118)
                      |+|
T Consensus       242 KpI  244 (684)
T KOG2591|consen  242 KPI  244 (684)
T ss_pred             cch
Confidence            876

>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons

Probab=89.31  E-value=0.32  Score=36.78  Aligned_cols=75  Identities=15%  Similarity=0.151  Sum_probs=42.6

Q ss_pred             cEEEeCCCCCcccHHHHHHhccC-CCceeEEEEec----c-------CceEEEeecchhhhhcccccccccc-eeeCCe-
Q psy9171          31 RVIHIRNIPNEVTEAEIIHLGIP-FGRVTNVLVLK----G-------KNQLLLHLEAEIIHLGIPFGRVTNV-LVLKGK-   96 (118)
Q Consensus        31 ~vL~V~NLP~~vte~dL~~Lf~~-fG~V~~v~l~~----~-------kgqAFVEm~~~e~A~~ai~~~~~n~-~~i~Gr-   96 (118)
                      ..|.||+||+..||+++.+..++ +|.-.+.....    .       -.-|+|.|.+.++...-...  .++ ..++.+ 
T Consensus         8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~--~~g~~F~D~kg   85 (176)
T PF03467_consen    8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDR--FDGHVFVDSKG   85 (176)
T ss_dssp             -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHH--CTTEEEE-TTS
T ss_pred             ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHh--cCCcEEECCCC
Confidence            36999999999999999998888 77663222221    1       24499999998886655332  333 233322 


Q ss_pred             ---eeEEEeccccc
Q psy9171          97 ---NQVSLISGYRN  107 (118)
Q Consensus        97 ---~v~V~~S~~~~  107 (118)
                         +-.|-||-++.
T Consensus        86 ~~~~~~VE~Apyqk   99 (176)
T PF03467_consen   86 NEYPAVVEFAPYQK   99 (176)
T ss_dssp             -EEEEEEEE-SS--
T ss_pred             CCcceeEEEcchhc
Confidence               44566776644

Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.

>PF15023 DUF4523: Protein of unknown function (DUF4523)

Probab=89.06  E-value=0.97  Score=34.33  Aligned_cols=60  Identities=12%  Similarity=0.162  Sum_probs=45.5

Q ss_pred             CCCCCCcEEEeCCCCCcc-cHHHHH---HhccCCCceeEEEEeccCceEEEeecchhhhhccccc
Q psy9171          25 SDFKPSRVIHIRNIPNEV-TEAEII---HLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFG   85 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~v-te~dL~---~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~   85 (118)
                      ..-+|=.+|-||=|+... ..+||.   .-.+.||+|.++.+. +|..|.|.|.|..+|-.|+..
T Consensus        81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~A  144 (166)
T PF15023_consen   81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSA  144 (166)
T ss_pred             CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHh
Confidence            334787788887766543 234444   457889999999886 678899999999999999754

>KOG0112|consensus

Probab=88.68  E-value=0.12  Score=48.14  Aligned_cols=74  Identities=15%  Similarity=0.145  Sum_probs=56.1

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      .-+++||++||+..+++.++...|..||+|..|.+-.     .--+||+-|.+...+-.+-.-  +.+..|..-.+.+-+
T Consensus       370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e--~s~~~I~~g~~r~gl  447 (975)
T KOG0112|consen  370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFE--ESGPLIGNGTHRIGL  447 (975)
T ss_pred             hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchh--hcCCccccCcccccc
Confidence            4478999999999999999999999999999998853     246799999999988777432  344444333444444


Q ss_pred             c
Q psy9171         103 S  103 (118)
Q Consensus       103 S  103 (118)
                      .
T Consensus       448 G  448 (975)
T KOG0112|consen  448 G  448 (975)
T ss_pred             c
Confidence            3

>KOG0128|consensus

Probab=87.67  E-value=0.054  Score=50.00  Aligned_cols=54  Identities=11%  Similarity=0.082  Sum_probs=47.2

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEe----c--cCceEEEeecchhhhhccccc
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL----K--GKNQLLLHLEAEIIHLGIPFG   85 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~----~--~kgqAFVEm~~~e~A~~ai~~   85 (118)
                      .+|++||++.+.+.||...|++||.+..+.+.    +  -||.|+++|..++.|.+||.+
T Consensus       669 ~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f  728 (881)
T KOG0128|consen  669 KIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF  728 (881)
T ss_pred             HHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence            47899999999999999999999999877665    1  279999999999999988754

>KOG0112|consensus

Probab=86.35  E-value=0.69  Score=43.36  Aligned_cols=78  Identities=9%  Similarity=0.016  Sum_probs=65.9

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCC--eeeEEEec
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKG--KNQVSLIS  103 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G--r~v~V~~S  103 (118)
                      ...|++-+.++.|++-+....|...|..||.|.++.+-.+-.+|.+.+++...|++|...  +-+..+.|  +++.+.|+
T Consensus       451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~--~rgap~G~P~~r~rvdla  528 (975)
T KOG0112|consen  451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHD--MRGAPLGGPPRRLRVDLA  528 (975)
T ss_pred             ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHH--HhcCcCCCCCcccccccc
Confidence            346788899999999999999999999999999988877788899999999999999754  66777665  46777777


Q ss_pred             cc
Q psy9171         104 GY  105 (118)
Q Consensus       104 ~~  105 (118)
                      .-
T Consensus       529 ~~  530 (975)
T KOG0112|consen  529 SP  530 (975)
T ss_pred             cC
Confidence            54

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
2cq1_A	101	Solution Structure Of Rna Binding Domain In Ptb-Lik		1e-13
1sjq_A	105	Nmr Structure Of Rrm1 From Human Polypyrimidine Tra		5e-12
2ad9_A	119	Solution Structure Of Polypyrimidine Tract Binding		5e-12

>pdb|2CQ1|A Chain A, Solution Structure Of Rna Binding Domain In Ptb-Like Protein L Length = 101

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
          K D  PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 9  KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 53

>pdb|1SJQ|A Chain A, Nmr Structure Of Rrm1 From Human Polypyrimidine Tract Binding Protein Isoform 1 (Ptb1) Length = 105

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 36/40 (90%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
          PSRVIHIR +P +VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQ 54

>pdb|2AD9|A Chain A, Solution Structure Of Polypyrimidine Tract Binding Protein Rbd1 Complexed With Cucucu Rna Length = 119

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 36/40 (90%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
          PSRVIHIR +P +VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQ 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	2e-17
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	2e-17
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	9e-16
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	1e-15
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	9e-15
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	1e-14
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	2e-14
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	9e-05
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	2e-04
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	3e-04
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	4e-04
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	6e-04

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 112

 Score = 71.1 bits (174), Expect = 2e-17
 Identities = 13/55 (23%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 21 DRQKSDFKPSRVIHIRNIPNE-VTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
           +     +  RVIH+ N+P+   +++ ++ L  P+G++ N ++++ K+Q  + +E
Sbjct: 16 QKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEME 70

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 102

 Score = 70.7 bits (173), Expect = 2e-17
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 21 DRQKSDFKPSRVIHIRNIPNEV-TEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
            QK   +  RV+HI +         +++ L  PFG ++N L+L   N+  + +   
Sbjct: 6  SGQKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATT 62

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 101

 Score = 66.4 bits (162), Expect = 9e-16
 Identities = 33/52 (63%), Positives = 40/52 (76%)

Query: 23 QKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
           K D  PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ  L L 
Sbjct: 8  DKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELA 59

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105

 Score = 66.0 bits (161), Expect = 1e-15
 Identities = 29/52 (55%), Positives = 38/52 (73%)

Query: 23 QKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
                PSRVIHIR +P +VTE E+I LG+PFG+VTN+L+LKGKNQ  + + 
Sbjct: 9  HHGSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMN 60

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 119

 Score = 64.2 bits (156), Expect = 9e-15
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query: 19 KLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
           +   +S   PSRVIHIR +P +VTE E+I LG+PFG+VTN+L+LKGKNQ  + + 
Sbjct: 20 HMGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMN 75

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} Length = 100

 Score = 63.2 bits (154), Expect = 1e-14
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
           S V+HIR + + V EA+++     FG ++ V+V+  K Q L+  E
Sbjct: 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFE 65

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Length = 104

 Score = 62.9 bits (153), Expect = 2e-14
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
           S V+H+R +   V EA+++     FG +  V+++  K Q L+  E
Sbjct: 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFE 59

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 97

 Score = 37.6 bits (88), Expect = 9e-05
 Identities = 6/40 (15%), Positives = 16/40 (40%)

Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKN 67
           P+  + +  +    + A +      FG +  +  +KG +
Sbjct: 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS 54

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKN 67
            VI  +N+P     AEI      FG +  VL+ +G  
Sbjct: 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGI 47

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99

 Score = 36.5 bits (85), Expect = 3e-04
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 22 RQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKN 67
            +  F     + + N+P ++TE E+  L   +G+   V + K K 
Sbjct: 7  GGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG 52

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Length = 103

 Score = 36.1 bits (84), Expect = 4e-04
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 23 QKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG 65
            S     +V+ +RN+ N VTE  +      FG++  V  LK 
Sbjct: 4  GSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD 46

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229

 Score = 36.9 bits (85), Expect = 6e-04
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 27  FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKN 67
           F PS  +H+ NIP  V+E ++  L    G V        K+
Sbjct: 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	99.93
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	99.91
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.91
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.9
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	99.89
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	99.89
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.88
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.81
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	99.81
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	99.8
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.8
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	99.8
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.8
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.8
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.79
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	99.79
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.79
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.79
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	99.78
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	99.78
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.78
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	99.78
2div_A	99	TRNA selenocysteine associated protein; structural	99.78
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	99.78
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	99.78
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	99.78
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.78
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.78
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.78
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.78
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.78
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	99.78
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	99.78
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	99.78
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.77
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	99.77
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.77
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	99.77
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.77
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.77
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.77
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.77
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	99.77
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	99.77
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.77
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	99.77
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	99.77
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.77
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	99.77
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	99.76
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.76
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	99.76
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.76
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	99.76
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	99.76
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	99.76
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	99.76
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.76
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	99.76
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	99.76
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	99.76
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.76
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.76
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.76
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.76
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	99.76
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.75
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	99.75
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.75
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.75
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.75
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.75
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	99.75
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	99.75
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	99.75
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.75
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.75
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.75
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.75
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	99.75
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	99.75
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.75
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	99.74
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	99.74
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.74
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	99.74
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.74
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.74
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.74
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	99.74
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.74
1x4e_A	85	RNA binding motif, single-stranded interacting pro	99.73
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	99.73
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.73
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	99.73
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.73
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	99.73
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.73
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.73
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.73
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	99.72
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	99.72
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.72
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	99.72
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.72
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.72
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.72
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.72
1x5p_A	97	Negative elongation factor E; structure genomics,	99.72
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	99.72
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.72
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.72
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	99.72
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.72
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.72
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	99.72
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	99.71
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	99.71
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.71
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.71
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	99.71
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.71
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	99.71
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.71
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	99.71
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.71
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	99.71
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	99.7
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	99.7
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.7
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.7
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	99.7
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.7
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.7
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	99.7
1x5o_A	114	RNA binding motif, single-stranded interacting pro	99.7
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	99.69
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	99.68
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.68
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.68
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.68
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.68
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.68
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.68
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	99.68
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.67
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.67
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.67
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.67
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.67
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.67
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	99.67
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.67
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	99.49
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.67
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	99.66
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.66
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.66
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.66
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.65
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.65
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.65
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.65
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.65
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.64
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	99.64
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.64
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.63
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.63
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	99.63
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.63
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.63
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.63
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.63
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.62
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.62
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.62
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	99.61
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.61
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.61
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.61
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.61
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.61
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.6
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	99.6
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	99.6
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	99.6
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.6
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.59
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	99.59
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.59
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	99.58
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	99.58
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.58
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	99.57
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.57
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.56
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.54
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.51
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	99.48
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.44
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	99.4
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	99.39
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	99.35
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	99.31
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	99.2
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.96
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	98.95
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	98.56
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	97.41
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	97.23
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	97.17
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	96.87
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	96.46
1uw4_A	91	UPF3X; nonsense mediated mRNA decay protein, RNA-b	96.08
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	93.91
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	93.86
2l08_A	97	Regulator of nonsense transcripts 3A; NESG, nonsen	93.2
3d45_A	507	Poly(A)-specific ribonuclease PARN; CAP analogue,	88.89
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	82.79

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=99.93  E-value=1.4e-26  Score=160.27  Aligned_cols=85  Identities=22%  Similarity=0.259  Sum_probs=76.3

Q ss_pred             CCCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        24 ~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      ....+||++|||+|||+++||++|.++|++||.|.++++++.||+|||||++.++|.+|+.....+++.++||+|+|+||
T Consensus        15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S   94 (100)
T 3r27_A           15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS   94 (100)
T ss_dssp             --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred             cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence            35559999999999999999999999999999999999999999999999999999999976444467799999999999


Q ss_pred             cccch
Q psy9171         104 GYRNR  108 (118)
Q Consensus       104 ~~~~~  108 (118)
                      +++.+
T Consensus        95 ~~k~l   99 (100)
T 3r27_A           95 TSQKI   99 (100)
T ss_dssp             SCSCC
T ss_pred             ccccc
Confidence            98643

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.91  E-value=1.8e-24  Score=148.24  Aligned_cols=84  Identities=42%  Similarity=0.578  Sum_probs=77.4

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      ...+|+++|||+|||+++||++|.++|++||.|.++.++++||+|||||++.++|..|+.....++..+.||+|+|.||+
T Consensus        10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~   89 (101)
T 2cq1_A           10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN   89 (101)
T ss_dssp             CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred             ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence            44589999999999999999999999999999999999999999999999999999998765567899999999999999


Q ss_pred             ccch
Q psy9171         105 YRNR  108 (118)
Q Consensus       105 ~~~~  108 (118)
                      .+..
T Consensus        90 ~~~~   93 (101)
T 2cq1_A           90 HKEL   93 (101)
T ss_dssp             CSSC
T ss_pred             cccC
Confidence            8654

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.91  E-value=1.1e-24  Score=154.37  Aligned_cols=92  Identities=38%  Similarity=0.537  Sum_probs=79.3

Q ss_pred             eeeccCCCCCCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCC
Q psy9171          16 VQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKG   95 (118)
Q Consensus        16 ~~~~~~~~~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G   95 (118)
                      -+++++.+... +|+++|||+|||+++||+||.++|++||.|.++.++++||+|||||++.++|..|+.....++..+.|
T Consensus        18 ~~~~~~~~~~~-~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G   96 (119)
T 2ad9_A           18 GSHMGDSRSAG-VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG   96 (119)
T ss_dssp             ----CCTTSCS-SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred             ccccccccccC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence            46777765555 99999999999999999999999999999999999999999999999999999998753334689999


Q ss_pred             eeeEEEeccccch
Q psy9171          96 KNQVSLISGYRNR  108 (118)
Q Consensus        96 r~v~V~~S~~~~~  108 (118)
                      |+|+|.||+.+..
T Consensus        97 r~l~V~~a~~k~~  109 (119)
T 2ad9_A           97 QPIYIQFSNHKEL  109 (119)
T ss_dssp             BCCEEEECSSSSC
T ss_pred             eEEEEEEccCCCC
Confidence            9999999988654

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.90  E-value=3.3e-24  Score=147.82  Aligned_cols=81  Identities=20%  Similarity=0.236  Sum_probs=74.2

Q ss_pred             CCCCCCcEEEeCCCCC-cccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          25 SDFKPSRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~-~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      ....|+++|||+|||+ ++||+||.++|++||.|.++.++++||+|||||++.++|..|+.....++..+.||+|+|+||
T Consensus        10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a   89 (102)
T 1x4d_A           10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS   89 (102)
T ss_dssp             CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred             CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence            3447999999999999 999999999999999999999999999999999999999999976444567899999999999


Q ss_pred             cc
Q psy9171         104 GY  105 (118)
Q Consensus       104 ~~  105 (118)
                      +.
T Consensus        90 ~~   91 (102)
T 1x4d_A           90 QK   91 (102)
T ss_dssp             CC
T ss_pred             CC
Confidence            84

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.89  E-value=7.6e-24  Score=145.61  Aligned_cols=84  Identities=19%  Similarity=0.181  Sum_probs=76.3

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      ...+|+++|||+|||+++||++|.++|++||.|.++.++++||+|||||++.++|..|+.....++..+.||+|+|.||+
T Consensus        10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~   89 (104)
T 1wex_A           10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST   89 (104)
T ss_dssp             CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred             CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence            34589999999999999999999999999999999999999999999999999999998764445678999999999998


Q ss_pred             ccch
Q psy9171         105 YRNR  108 (118)
Q Consensus       105 ~~~~  108 (118)
                      .+.+
T Consensus        90 ~~~~   93 (104)
T 1wex_A           90 SKRI   93 (104)
T ss_dssp             SSSC
T ss_pred             Cccc
Confidence            8654

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.89  E-value=1.1e-23  Score=146.75  Aligned_cols=82  Identities=41%  Similarity=0.591  Sum_probs=75.4

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      -+|+.+|||+|||+++||+||.++|++||.|.++.++++||+|||||++.++|..|+.....++..+.||+|+|.||+.+
T Consensus        13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~   92 (105)
T 1sjq_A           13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK   92 (105)
T ss_dssp             CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence            37899999999999999999999999999999999999999999999999999999975444578999999999999886


Q ss_pred             ch
Q psy9171         107 NR  108 (118)
Q Consensus       107 ~~  108 (118)
                      ..
T Consensus        93 ~~   94 (105)
T 1sjq_A           93 EL   94 (105)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.88  E-value=1.2e-23  Score=147.73  Aligned_cols=82  Identities=20%  Similarity=0.398  Sum_probs=75.2

Q ss_pred             CCCCcEEEeCCCCCc-ccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          27 FKPSRVIHIRNIPNE-VTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~-vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      .+|+++|||+|||++ +||+||.++|++||.|.++.+++.||+|||||++.++|..|+.....++..+.||+|+|+||+.
T Consensus        22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~  101 (112)
T 1x4f_A           22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK  101 (112)
T ss_dssp             SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred             CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence            378999999999998 9999999999999999999999999999999999999999997644567889999999999986


Q ss_pred             cch
Q psy9171         106 RNR  108 (118)
Q Consensus       106 ~~~  108 (118)
                      +.+
T Consensus       102 ~~~  104 (112)
T 1x4f_A          102 YKK  104 (112)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            543

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.81  E-value=5e-21  Score=127.21  Aligned_cols=78  Identities=14%  Similarity=0.152  Sum_probs=69.3

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCC-ceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFG-RVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG-~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      |++|||+|||+++||+||.++|++|| .|.+++++++      ||+|||+|++.++|..|+.. ..|+..+.||+|.|.|
T Consensus         1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~-~~~~~~~~gr~i~V~~   79 (91)
T 2lxi_A            1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEA-NQHSLNILGQKVSMHY   79 (91)
T ss_dssp             CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHT-TTTEEEETTEEEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHh-cCCCeEECCEEEEEEE
Confidence            67999999999999999999999999 8999998753      79999999999999999853 2368899999999999


Q ss_pred             ccccch
Q psy9171         103 SGYRNR  108 (118)
Q Consensus       103 S~~~~~  108 (118)
                      |+.+..
T Consensus        80 a~~~~~   85 (91)
T 2lxi_A           80 SDPKPK   85 (91)
T ss_dssp             CCSCCC
T ss_pred             cCCCCC
Confidence            987654

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=6.5e-20  Score=118.20  Aligned_cols=75  Identities=12%  Similarity=0.201  Sum_probs=70.9

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccc-cceeeCCeeeEEEecc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVT-NVLVLKGKNQVSLISG  104 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~-n~~~i~Gr~v~V~~S~  104 (118)
                      +++++|||+|||+++|+++|.++|++||.|.++.+.+.||+|||+|++.++|..|+..  + |+..+.|++|.|.||+
T Consensus        10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~--l~~~~~~~g~~l~v~~ak   85 (85)
T 2ytc_A           10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEK--SFNKLIVNGRRLNVKWGR   85 (85)
T ss_dssp             SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHT--TTTTCEETTEECCEEECC
T ss_pred             CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHH--hcCCeeECCCEEEEEecC
Confidence            6788999999999999999999999999999999999999999999999999999864  5 8999999999999985

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.80  E-value=5.9e-20  Score=121.72  Aligned_cols=80  Identities=10%  Similarity=0.040  Sum_probs=74.3

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeC--CeeeEEEec
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLK--GKNQVSLIS  103 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~--Gr~v~V~~S  103 (118)
                      ..+|+++|||+|||+++|+++|.++|++||.|.++.+.++|++|||+|++.++|..|+..  +|+..+.  |++|.|.||
T Consensus        13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~~~g~~l~V~~a   90 (97)
T 1why_A           13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAK--MRGFPLGGPDRRLRVDFA   90 (97)
T ss_dssp             CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHH--HTTCBCSSSSCBCEEEEC
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHH--HCCCEeCCCCcEEEEEEC
Confidence            347889999999999999999999999999999999999999999999999999999864  7899999  999999999


Q ss_pred             cccc
Q psy9171         104 GYRN  107 (118)
Q Consensus       104 ~~~~  107 (118)
                      +.+.
T Consensus        91 ~~~~   94 (97)
T 1why_A           91 KSGP   94 (97)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8754

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.80  E-value=7e-20  Score=123.68  Aligned_cols=76  Identities=13%  Similarity=0.053  Sum_probs=69.2

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      ..+..|||+|||+++||++|.++|++||.|.++.++++      ||+|||+|++.++|..|+..  +|+..+.||+|.|.
T Consensus        17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~--lng~~~~gr~l~V~   94 (99)
T 4fxv_A           17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT--LNGLRLQSKTIKVS   94 (99)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH--hCCCEECCEEEEEE
Confidence            44568999999999999999999999999999999853      57999999999999999864  89999999999999


Q ss_pred             eccc
Q psy9171         102 ISGY  105 (118)
Q Consensus       102 ~S~~  105 (118)
                      ||+-
T Consensus        95 ~AkP   98 (99)
T 4fxv_A           95 YARP   98 (99)
T ss_dssp             ECCB
T ss_pred             EeeC
Confidence            9974

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.80  E-value=1.1e-19  Score=120.82  Aligned_cols=79  Identities=20%  Similarity=0.291  Sum_probs=74.1

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      .+|+++|||+|||+++|+++|.++|++||.|.++.+.+.||+|||+|++.++|..|+..  +|+..+.|++|.|.+++.+
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~--l~g~~~~g~~l~v~~a~~~   89 (99)
T 2cpj_A           12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVE--LDNMPLRGKQLRVRFACHS   89 (99)
T ss_dssp             CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHH--HTTCCBTTBCCEEEESSCC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHH--hCCCEeCCceEEEEEcCCC
Confidence            47789999999999999999999999999999999999999999999999999999854  8899999999999999875


Q ss_pred             c
Q psy9171         107 N  107 (118)
Q Consensus       107 ~  107 (118)
                      .
T Consensus        90 ~   90 (99)
T 2cpj_A           90 A   90 (99)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.80  E-value=1.1e-19  Score=120.30  Aligned_cols=79  Identities=22%  Similarity=0.205  Sum_probs=72.8

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      |+++|||+|||+++|+++|.++|++||.|.++.+..+      +|+|||+|++.++|..|+..  +|+..+.|++|.|.+
T Consensus         1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V~~   78 (96)
T 2x1f_A            1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN--LNGYQLGSRFLKCGY   78 (96)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH--HTTCEETTEECEEEE
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH--hCCCeECCeEEEEEE
Confidence            7899999999999999999999999999999999854      78999999999999999854  889999999999999


Q ss_pred             ccccchH
Q psy9171         103 SGYRNRQ  109 (118)
Q Consensus       103 S~~~~~~  109 (118)
                      |+.+...
T Consensus        79 a~~~~~~   85 (96)
T 2x1f_A           79 SSNSDIS   85 (96)
T ss_dssp             CSCSSGG
T ss_pred             cCCCCCC
Confidence            9886543

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.80  E-value=1.2e-19  Score=116.72  Aligned_cols=75  Identities=17%  Similarity=0.199  Sum_probs=69.7

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      +|+++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|++.++|..|+..  +|+..+.|++|.|.
T Consensus         5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~   82 (85)
T 3mdf_A            5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN--MNESELFGRTIRVN   82 (85)
T ss_dssp             CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH--HTTCEETTEECEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH--hCCCEECCcEEEEE
Confidence            68899999999999999999999999999999998643      78999999999999999854  88999999999999


Q ss_pred             ecc
Q psy9171         102 ISG  104 (118)
Q Consensus       102 ~S~  104 (118)
                      +|+
T Consensus        83 ~ak   85 (85)
T 3mdf_A           83 LAK   85 (85)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            985

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.79  E-value=2.9e-19  Score=123.06  Aligned_cols=77  Identities=10%  Similarity=0.052  Sum_probs=71.5

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      +|+++|||+|||+++||++|.++|++||.|.++.++.+      ||+|||+|++.++|..|+..  +|+..+.||+|.|.
T Consensus         4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~--lng~~~~gr~i~V~   81 (110)
T 3s8s_A            4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKN--LHLTSVMGNIIHAQ   81 (110)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEEE
T ss_pred             CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHH--hCCCEECCeEEEEE
Confidence            78999999999999999999999999999999999743      68999999999999999864  89999999999999


Q ss_pred             ecccc
Q psy9171         102 ISGYR  106 (118)
Q Consensus       102 ~S~~~  106 (118)
                      +|+..
T Consensus        82 ~a~~~   86 (110)
T 3s8s_A           82 LDIKG   86 (110)
T ss_dssp             ECSTT
T ss_pred             ECCCC
Confidence            99764

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.79  E-value=2.1e-19  Score=119.54  Aligned_cols=82  Identities=11%  Similarity=0.088  Sum_probs=74.1

Q ss_pred             CCCCCCCcEEEeCCCCCcccHHHHH----HhccCCCceeEEEEecc---CceEEEeecchhhhhcccccccccceeeCCe
Q psy9171          24 KSDFKPSRVIHIRNIPNEVTEAEII----HLGIPFGRVTNVLVLKG---KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK   96 (118)
Q Consensus        24 ~~~~~PS~vL~V~NLP~~vte~dL~----~Lf~~fG~V~~v~l~~~---kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr   96 (118)
                      +....++..|||+|||+++|+++|.    ++|++||.|.++.++.+   |++|||+|++.++|..|+..  +|+..+.||
T Consensus         3 s~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~--l~g~~~~gr   80 (96)
T 2dgx_A            3 SGSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNS--LHRYKIGSK   80 (96)
T ss_dssp             CCCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHH--HTTEEETTE
T ss_pred             CCCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHH--hCCCEECCe
Confidence            3455677899999999999999999    99999999999999865   89999999999999999864  899999999


Q ss_pred             eeEEEeccccc
Q psy9171          97 NQVSLISGYRN  107 (118)
Q Consensus        97 ~v~V~~S~~~~  107 (118)
                      +|.|.+|+.+.
T Consensus        81 ~l~V~~a~~~~   91 (96)
T 2dgx_A           81 KILVSLATGAS   91 (96)
T ss_dssp             EEEEEECCCSS
T ss_pred             EEEEEEcCCCC
Confidence            99999997654

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=4.5e-19  Score=116.15  Aligned_cols=77  Identities=16%  Similarity=0.165  Sum_probs=70.5

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      ..+++++|||+|||+++|+++|.++|++||.|.++.+..+      +++|||+|++.++|..|+..  +|+..+.|++|.
T Consensus        12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~   89 (94)
T 2e5h_A           12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA--INNKQLFGRVIK   89 (94)
T ss_dssp             CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH--TTTEEETTEEEE
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH--cCCCeeCCcEEE
Confidence            3367889999999999999999999999999999999753      68999999999999999854  889999999999


Q ss_pred             EEecc
Q psy9171         100 SLISG  104 (118)
Q Consensus       100 V~~S~  104 (118)
                      |.||+
T Consensus        90 v~~ak   94 (94)
T 2e5h_A           90 ASIAI   94 (94)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            99985

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.79  E-value=2.2e-19  Score=115.94  Aligned_cols=77  Identities=17%  Similarity=0.143  Sum_probs=68.7

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      +|+++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|++.++|..|+..  +|+..+.|++|.|.
T Consensus         4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~v~   81 (87)
T 3bs9_A            4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ--MGGQWLGGRQIRTN   81 (87)
T ss_dssp             --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEEE
T ss_pred             CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH--cCCCEECCeEEEEE
Confidence            57889999999999999999999999999999999864      68999999999999999854  78999999999999


Q ss_pred             ecccc
Q psy9171         102 ISGYR  106 (118)
Q Consensus       102 ~S~~~  106 (118)
                      +|+.+
T Consensus        82 ~a~~k   86 (87)
T 3bs9_A           82 WATRK   86 (87)
T ss_dssp             EEC--
T ss_pred             ecCCC
Confidence            99764

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.78  E-value=7.5e-19  Score=117.26  Aligned_cols=81  Identities=15%  Similarity=0.155  Sum_probs=73.9

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc----CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      ....++++|||+|||+++|+++|.++|++||.|.++.++.+    +++|||+|++.++|..|+..  +|+..+.|++|.|
T Consensus        10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v   87 (103)
T 2cq3_A           10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK--LHGTVVEGRKIEV   87 (103)
T ss_dssp             CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHH--HTTCEETTEECEE
T ss_pred             CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHH--hCCCEECCEEEEE
Confidence            44477899999999999999999999999999999999865    78999999999999999854  7899999999999


Q ss_pred             Eeccccc
Q psy9171         101 LISGYRN  107 (118)
Q Consensus       101 ~~S~~~~  107 (118)
                      .+++.+.
T Consensus        88 ~~a~~~~   94 (103)
T 2cq3_A           88 NNATARV   94 (103)
T ss_dssp             EECCSSC
T ss_pred             EEcccCC
Confidence            9998764

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=99.78  E-value=3.6e-19  Score=119.18  Aligned_cols=80  Identities=13%  Similarity=0.165  Sum_probs=72.1

Q ss_pred             CCCCCCcEEEeCCCCC-cccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          25 SDFKPSRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~-~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      ...+|+++|||+|||+ ++|+++|.++|++||.|.++.+.  +|+|||+|++.++|..|+..  +|+..+.|++|.|.+|
T Consensus        17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V~~a   92 (97)
T 2xnq_A           17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEX--ESQEMNFGKKLILEVS   92 (97)
T ss_dssp             --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHH--HTTSEETTEECEEEEC
T ss_pred             CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHH--cCCCEECCEEEEEEec
Confidence            4447899999999998 99999999999999999999984  89999999999999999864  8899999999999999


Q ss_pred             cccch
Q psy9171         104 GYRNR  108 (118)
Q Consensus       104 ~~~~~  108 (118)
                      +.++|
T Consensus        93 ~~~~r   97 (97)
T 2xnq_A           93 SSNAR   97 (97)
T ss_dssp             CCCC-
T ss_pred             CCCCC
Confidence            88764

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.78  E-value=3.1e-19  Score=118.14  Aligned_cols=80  Identities=14%  Similarity=0.111  Sum_probs=73.4

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      ..++++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|.+.++|..|+..  +|+..+.|++|.|
T Consensus         5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~V   82 (99)
T 1whw_A            5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE--VDGQVFQGRMLHV   82 (99)
T ss_dssp             CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH--TTTEESSSCEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH--hCCCEECCcEEEE
Confidence            378999999999999999999999999999999999764      58999999999999999854  8999999999999


Q ss_pred             Eeccccch
Q psy9171         101 LISGYRNR  108 (118)
Q Consensus       101 ~~S~~~~~  108 (118)
                      .+++.+..
T Consensus        83 ~~a~~~~~   90 (99)
T 1whw_A           83 LPSTIKKE   90 (99)
T ss_dssp             EECCCCST
T ss_pred             EEcCCCcc
Confidence            99987654

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=3.3e-19  Score=116.63  Aligned_cols=77  Identities=25%  Similarity=0.249  Sum_probs=71.9

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRN  107 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~~  107 (118)
                      +|+++|||+|||+++|+++|.++|++||.|.++.+.  |++|||+|++.++|..|+..  +|+..+.|++|.|.+++.+.
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~v~~a~~~~   81 (90)
T 2dnq_A            6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRN--LHHYKLHGVNINVEASKNKS   81 (90)
T ss_dssp             SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHH--HTTCBCSSCBCEEECSSCCC
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHH--hcCCccCCcEEEEEECCCCC
Confidence            789999999999999999999999999999999998  79999999999999999854  88999999999999998765


Q ss_pred             h
Q psy9171         108 R  108 (118)
Q Consensus       108 ~  108 (118)
                      .
T Consensus        82 ~   82 (90)
T 2dnq_A           82 K   82 (90)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=2.8e-19  Score=118.36  Aligned_cols=83  Identities=10%  Similarity=0.032  Sum_probs=74.4

Q ss_pred             CCCCCCCcEEEeCCCCCcccHHHHHHhccCCCcee-EEEEecc------CceEEEeecchhhhhcccccccccceeeCCe
Q psy9171          24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVT-NVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK   96 (118)
Q Consensus        24 ~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~-~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr   96 (118)
                      +.+..|+++|||+|||+++|+++|.++|++||.|. ++.++.+      +|+|||+|.+.++|..|+..  +|+..+.|+
T Consensus         3 s~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~   80 (99)
T 2div_A            3 SGSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK--INGKPLPGA   80 (99)
T ss_dssp             CCCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT--TTTSEESSC
T ss_pred             CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH--HcCCccCCC
Confidence            34458899999999999999999999999999999 9999864      48999999999999999854  889999999


Q ss_pred             e----eEEEeccccch
Q psy9171          97 N----QVSLISGYRNR  108 (118)
Q Consensus        97 ~----v~V~~S~~~~~  108 (118)
                      +    +.|.||+...+
T Consensus        81 ~~~~~l~v~~a~~~~~   96 (99)
T 2div_A           81 TPAKRFKLNYATYSGP   96 (99)
T ss_dssp             SSCEECCEEETTCCSS
T ss_pred             CcceeEEEeecCCCCC
Confidence            9    99999987543

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=99.78  E-value=4.3e-19  Score=118.91  Aligned_cols=79  Identities=23%  Similarity=0.252  Sum_probs=72.2

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      +...|+++|||+|||+++|+++|.++|++||.|.++.++  +++|||+|++.++|..|+..  +|+..+.|++|.|.+++
T Consensus         6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~~a~   81 (103)
T 2dgu_A            6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEE--MNGKDLEGENIEIVFAK   81 (103)
T ss_dssp             CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHH--HTTEEETTEEEEEEECC
T ss_pred             CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHH--HCCCccCCCEEEEEEcC
Confidence            455789999999999999999999999999999999987  57999999999999999864  88999999999999997


Q ss_pred             ccc
Q psy9171         105 YRN  107 (118)
Q Consensus       105 ~~~  107 (118)
                      .+.
T Consensus        82 ~~~   84 (103)
T 2dgu_A           82 PPD   84 (103)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            654

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.78  E-value=6.5e-19  Score=117.57  Aligned_cols=80  Identities=15%  Similarity=0.098  Sum_probs=73.0

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec----cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      ...++++|||+|||+++|+++|.++|++||.|.++.++.    .||+|||+|.+.++|..|+..  +|+..+.|++|.|.
T Consensus        11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~V~   88 (103)
T 2cqi_A           11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAA--MNGRKILGKEVKVN   88 (103)
T ss_dssp             CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHH--HTTEEETTEEEEEE
T ss_pred             CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHH--hCCCCcCCCeEEEE
Confidence            336789999999999999999999999999999999986    378999999999999999854  88999999999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      +++.+.
T Consensus        89 ~a~~~~   94 (103)
T 2cqi_A           89 WATTPS   94 (103)
T ss_dssp             ECCCTT
T ss_pred             ECCCCc
Confidence            998754

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=99.78  E-value=2.7e-19  Score=122.14  Aligned_cols=76  Identities=11%  Similarity=0.055  Sum_probs=71.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      ..|--|||+||++++||++|.+||.+||+|.++.+...||+|||||.++++|..|+..  +|+..+.||+|++++|+-
T Consensus         5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~--Ln~~~l~gr~I~V~~A~e   80 (89)
T 2wbr_A            5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMA--LNNCVLANTTIFAESPSE   80 (89)
T ss_dssp             CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH--HTTEEETTEEEEEECCCH
T ss_pred             CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHH--hcCCEECCcEEEEEECCH
Confidence            3466799999999999999999999999999999999999999999999999999964  999999999999999943

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.78  E-value=3.7e-19  Score=118.36  Aligned_cols=81  Identities=16%  Similarity=0.146  Sum_probs=73.4

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ   98 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v   98 (118)
                      ...+++++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|++.++|..|+..  +|+..+.|++|
T Consensus         7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l   84 (102)
T 2cqb_A            7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN--MNESELFGRTI   84 (102)
T ss_dssp             CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHH--HTTEEETTEEE
T ss_pred             CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH--hCCCEECCcEE
Confidence            34478899999999999999999999999999999999753      78999999999999999854  78999999999


Q ss_pred             EEEeccccc
Q psy9171          99 VSLISGYRN  107 (118)
Q Consensus        99 ~V~~S~~~~  107 (118)
                      .|.+++.+.
T Consensus        85 ~V~~a~~~~   93 (102)
T 2cqb_A           85 RVNLAKPMR   93 (102)
T ss_dssp             EEEECCCCC
T ss_pred             EEEeCCCCC
Confidence            999998754

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.78  E-value=2.5e-19  Score=117.76  Aligned_cols=78  Identities=14%  Similarity=0.070  Sum_probs=71.8

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEE-EEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV-LVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v-~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      +|+++|||+|||+++|+++|.++|++||.|.++ .++.+      +|+|||+|++.++|..|+..  +|+..+.|++|.|
T Consensus         3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~v   80 (96)
T 1x5t_A            3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA--MNGQYLCNRPITV   80 (96)
T ss_dssp             SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHT--TTTCEETTEECEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHH--cCCCEECCEEEEE
Confidence            678999999999999999999999999999999 88764      78999999999999999864  8899999999999


Q ss_pred             Eeccccc
Q psy9171         101 LISGYRN  107 (118)
Q Consensus       101 ~~S~~~~  107 (118)
                      .+|+.+.
T Consensus        81 ~~a~~~~   87 (96)
T 1x5t_A           81 SYAFKKD   87 (96)
T ss_dssp             EESCCCC
T ss_pred             EEecccC
Confidence            9997654

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=3.9e-19  Score=116.65  Aligned_cols=78  Identities=17%  Similarity=0.133  Sum_probs=72.1

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      +|+++|||+|||+++|+++|.++|++||.|.++.+..+      +++|||+|++.++|..|+..  +|+..+.|++|.|.
T Consensus         3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~V~   80 (95)
T 2dnz_A            3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ--LNGFELAGRPMRVG   80 (95)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHH--HTTCCSSSSCCEEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH--hCCCeeCCcEEEEE
Confidence            67899999999999999999999999999999999864      67999999999999999864  88999999999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      +++.+.
T Consensus        81 ~a~~~~   86 (95)
T 2dnz_A           81 HVTERL   86 (95)
T ss_dssp             ESSCCC
T ss_pred             Eccccc
Confidence            998754

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.5e-19  Score=120.28  Aligned_cols=77  Identities=19%  Similarity=0.148  Sum_probs=72.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      +++++|||+|||+++|+++|.++|++||.|.++.+.+.||+|||+|++.++|..|+..  +|+..+.|++|.|.+|+.+
T Consensus        25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V~~a~~~  101 (101)
T 2la4_A           25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVA--LANFPFQGRNLRTGWGKER  101 (101)
T ss_dssp             SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHH--HTTCEETTEECCCCBCCCC
T ss_pred             CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHH--hCCCeECCeEEEEEeccCC
Confidence            5578999999999999999999999999999999999999999999999999999864  8899999999999999753

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.78  E-value=5.3e-19  Score=115.76  Aligned_cols=78  Identities=12%  Similarity=0.082  Sum_probs=71.2

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      ..+|+++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|++.++|..|+..  +|+..+.|++|.
T Consensus        11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~   88 (95)
T 2cqc_A           11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER--ANGMELDGRRIR   88 (95)
T ss_dssp             SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH--HTTEEETTEEEE
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH--hCCCEECCEEEE
Confidence            3378999999999999999999999999999999999743      67999999999999999864  789999999999


Q ss_pred             EEeccc
Q psy9171         100 SLISGY  105 (118)
Q Consensus       100 V~~S~~  105 (118)
                      |.+|+.
T Consensus        89 v~~a~~   94 (95)
T 2cqc_A           89 VSGPSS   94 (95)
T ss_dssp             EECCSC
T ss_pred             EEecCC
Confidence            999964

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=7.2e-19  Score=115.46  Aligned_cols=78  Identities=23%  Similarity=0.223  Sum_probs=71.7

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      ..++++|||+|||+++|+++|.++|++||.|.++.+.  +++|||+|++.++|..|+..  +|+..+.|++|.|.+++.+
T Consensus         7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~V~~a~~~   82 (92)
T 2dgt_A            7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRG--LDNTEFQGKRMHVQLSTSR   82 (92)
T ss_dssp             CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHH--HTTEEETTEEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHH--hCCCeeCCcEEEEEEccCC
Confidence            3788999999999999999999999999999999997  45999999999999999854  8899999999999999876


Q ss_pred             ch
Q psy9171         107 NR  108 (118)
Q Consensus       107 ~~  108 (118)
                      ..
T Consensus        83 ~~   84 (92)
T 2dgt_A           83 LR   84 (92)
T ss_dssp             CS
T ss_pred             CC
Confidence            53

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=99.78  E-value=3.4e-19  Score=117.34  Aligned_cols=78  Identities=14%  Similarity=0.182  Sum_probs=72.4

Q ss_pred             CCCcEEEeCCCCCcccHHHHH----HhccCCCceeEEEEec---cCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEII----HLGIPFGRVTNVLVLK---GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~----~Lf~~fG~V~~v~l~~---~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      +|+++|||+|||+++|+++|.    ++|++||.|.++.+..   .+|+|||+|.+.++|..|+..  +|+..+.|+++.|
T Consensus         6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~v   83 (97)
T 1nu4_A            6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS--MQGFPFYDKPMRI   83 (97)
T ss_dssp             CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHH--HTTCEETTEECEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHH--hCCCEECCcEEEE
Confidence            789999999999999999999    9999999999999873   489999999999999999854  8899999999999


Q ss_pred             Eeccccc
Q psy9171         101 LISGYRN  107 (118)
Q Consensus       101 ~~S~~~~  107 (118)
                      .||+.++
T Consensus        84 ~~a~~~~   90 (97)
T 1nu4_A           84 QYAKTDS   90 (97)
T ss_dssp             EECSSCC
T ss_pred             EEccCCC
Confidence            9998754

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.78  E-value=3.9e-19  Score=120.19  Aligned_cols=78  Identities=12%  Similarity=0.107  Sum_probs=73.4

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRN  107 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~~  107 (118)
                      +++++|||+|||+++|+++|..+|++||.|.++.+..++|+|||+|++.++|..|+..  +|+..+.|++|.|.+++.+.
T Consensus        23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~~a~~~~  100 (109)
T 1x4g_A           23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS--VNGTTIEGHVVKCYWGKESP  100 (109)
T ss_dssp             SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH--HTTCEETTEECEEECCCCCC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH--cCCCEECCcEEEEEecCCCC
Confidence            6788999999999999999999999999999999999999999999999999999854  78999999999999998754

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.77  E-value=6.4e-19  Score=112.83  Aligned_cols=75  Identities=7%  Similarity=-0.067  Sum_probs=68.9

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      +.+|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|++.++|..|+..  +|+..+.|++|.|.+|
T Consensus         1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~--l~g~~~~g~~l~v~~a   78 (83)
T 3md1_A            1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS--MQGQDLNGRPLRINWA   78 (83)
T ss_dssp             CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH--HTTCEETTEECEEEEC
T ss_pred             CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHH--hcCCeeCCcEEEEEec
Confidence            357999999999999999999999999999999854      78999999999999999854  7899999999999999


Q ss_pred             ccc
Q psy9171         104 GYR  106 (118)
Q Consensus       104 ~~~  106 (118)
                      +.+
T Consensus        79 ~~~   81 (83)
T 3md1_A           79 AKL   81 (83)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            764

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.77  E-value=1.7e-19  Score=127.16  Aligned_cols=79  Identities=9%  Similarity=-0.028  Sum_probs=72.8

Q ss_pred             CCCCCCcEEEe--CCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceee-----CCee
Q psy9171          25 SDFKPSRVIHI--RNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVL-----KGKN   97 (118)
Q Consensus        25 ~~~~PS~vL~V--~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i-----~Gr~   97 (118)
                      .+.+|+++|||  +|||+++||++|.++|++||.|.++.+.++||+|||+|++.++|..|+..  +|+..+     .|++
T Consensus        20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~--lnG~~~~~~lg~g~~   97 (114)
T 2cq2_A           20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT--LNGKEVVDDLGQKIT   97 (114)
T ss_dssp             CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH--TTTCEEECTTSCEEE
T ss_pred             CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH--hCCCEEccccCCCcE
Confidence            34489999999  77999999999999999999999999988999999999999999999864  899988     8999


Q ss_pred             eEEEeccc
Q psy9171          98 QVSLISGY  105 (118)
Q Consensus        98 v~V~~S~~  105 (118)
                      +++.|++.
T Consensus        98 l~v~~a~~  105 (114)
T 2cq2_A           98 LYLNFVEK  105 (114)
T ss_dssp             CEEEEESC
T ss_pred             EEEEeccc
Confidence            99999975

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.77  E-value=1e-18  Score=116.55  Aligned_cols=78  Identities=13%  Similarity=0.138  Sum_probs=72.1

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|.+.++|..|+..  +|+..+.|++|.|.
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~v~   90 (103)
T 2cq0_A           13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG--VSGFGYDHLILNVE   90 (103)
T ss_dssp             SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH--TTTCEETTEECEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH--cCCCeeCCcEEEEE
Confidence            67899999999999999999999999999999999854      57999999999999999864  88999999999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      +++.+.
T Consensus        91 ~a~~~~   96 (103)
T 2cq0_A           91 WAKPST   96 (103)
T ss_dssp             ESSCCC
T ss_pred             ECCCCC
Confidence            998764

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=99.77  E-value=4.3e-19  Score=116.43  Aligned_cols=76  Identities=17%  Similarity=0.080  Sum_probs=70.7

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      +++++|||+|||+++|+++|.++|++||.|.++.+..+     +|+|||+|++.++|..|+..  +|+..+.|++|.|.+
T Consensus        14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~V~~   91 (95)
T 2ywk_A           14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIAL--LNGIRLYGRPINVSG   91 (95)
T ss_dssp             TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHH--HTTCEETTEECEEEC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHH--hCCCEECCCEEEEEE
Confidence            67899999999999999999999999999999999864     68999999999999999854  889999999999999


Q ss_pred             ccc
Q psy9171         103 SGY  105 (118)
Q Consensus       103 S~~  105 (118)
                      |+.
T Consensus        92 a~~   94 (95)
T 2ywk_A           92 PSS   94 (95)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            974

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.77  E-value=4.9e-19  Score=116.97  Aligned_cols=79  Identities=13%  Similarity=0.034  Sum_probs=71.9

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec---------cCceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK---------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ   98 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~---------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v   98 (118)
                      +|+++|||+|||+++|+++|.++|++||.|.++.+..         .+|+|||+|.+.++|..|+..  +|+..+.|++|
T Consensus         3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l   80 (98)
T 2cpf_A            3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ--LQGHTVDGHKL   80 (98)
T ss_dssp             CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH--STTCEETTEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHH--hCCCeeCCeEE
Confidence            6889999999999999999999999999999999984         257999999999999999854  88999999999


Q ss_pred             EEEeccccch
Q psy9171          99 VSLISGYRNR  108 (118)
Q Consensus        99 ~V~~S~~~~~  108 (118)
                      .|.+|+.+..
T Consensus        81 ~V~~a~~~~~   90 (98)
T 2cpf_A           81 EVRISERATK   90 (98)
T ss_dssp             EEECSSCSSC
T ss_pred             EEEEccCCCC
Confidence            9999987643

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.77  E-value=5e-19  Score=121.51  Aligned_cols=76  Identities=17%  Similarity=0.150  Sum_probs=69.6

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc----CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      +..|||+|||+++||++|.++|++||.|.++.++.+    ||+|||+|++.++|..|+..  +|+..+.||+|.|.+++.
T Consensus         5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~--l~~~~~~g~~i~V~~a~~   82 (115)
T 4f25_A            5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK--MNGMLLNDRKVFVGRFKS   82 (115)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHH--HTTCEETTEECEEEESSC
T ss_pred             CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHH--cCCCEECCEEEEEEECCC
Confidence            557999999999999999999999999999999864    78999999999999999864  889999999999999876


Q ss_pred             cc
Q psy9171         106 RN  107 (118)
Q Consensus       106 ~~  107 (118)
                      +.
T Consensus        83 ~~   84 (115)
T 4f25_A           83 RK   84 (115)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.77  E-value=5.1e-19  Score=120.70  Aligned_cols=78  Identities=14%  Similarity=0.100  Sum_probs=71.7

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      +++++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|.+.++|..|+..  +|+..+.||+|.|.
T Consensus        24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~--l~g~~i~g~~l~V~  101 (108)
T 2jrs_A           24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ--LNGFELAGRPMKVG  101 (108)
T ss_dssp             SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHH--HTTCCSSSSCCEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH--cCCCEECCEEEEEE
Confidence            67889999999999999999999999999999999853      68999999999999999854  88999999999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      +|+.++
T Consensus       102 ~a~~k~  107 (108)
T 2jrs_A          102 HVTERT  107 (108)
T ss_dssp             CSCSSC
T ss_pred             EcccCC
Confidence            998653

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=1.1e-18  Score=115.94  Aligned_cols=78  Identities=15%  Similarity=0.151  Sum_probs=71.7

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.+..+     +|+|||+|++.++|..|+..  +|+..+.|++|.|.+
T Consensus        15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~~   92 (100)
T 2do4_A           15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK--MDGMTIKENIIKVAI   92 (100)
T ss_dssp             CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH--HTTEESSSCEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHH--hCCCEECCEEEEEEE
Confidence            67889999999999999999999999999999999864     48999999999999999854  889999999999999


Q ss_pred             ccccc
Q psy9171         103 SGYRN  107 (118)
Q Consensus       103 S~~~~  107 (118)
                      |+.+.
T Consensus        93 a~~~~   97 (100)
T 2do4_A           93 SNSGP   97 (100)
T ss_dssp             CCCCS
T ss_pred             CCCCC
Confidence            97654

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=99.77  E-value=4.3e-19  Score=125.89  Aligned_cols=83  Identities=18%  Similarity=0.197  Sum_probs=73.7

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHH----HhccCCCceeEEEEec---cCceEEEeecchhhhhcccccccccceeeCCee
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEII----HLGIPFGRVTNVLVLK---GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN   97 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~----~Lf~~fG~V~~v~l~~---~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~   97 (118)
                      ...+|+++|||+|||+++++++|.    ++|++||.|.++.+..   .||+|||+|++.++|..|+..  +|+..+.||+
T Consensus        24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~--lng~~l~gr~  101 (127)
T 2a3j_A           24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEA--FQGYPFQGNP  101 (127)
T ss_dssp             CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHH--STTCCCTTSC
T ss_pred             CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHH--HCCCEeCCCE
Confidence            344789999999999999999875    6999999999998864   489999999999999999864  8999999999


Q ss_pred             eEEEeccccchH
Q psy9171          98 QVSLISGYRNRQ  109 (118)
Q Consensus        98 v~V~~S~~~~~~  109 (118)
                      |.|.||+.++-.
T Consensus       102 l~V~~a~~~~~~  113 (127)
T 2a3j_A          102 LVITFSETPQSQ  113 (127)
T ss_dssp             CEEEECCCCCHH
T ss_pred             EEEEEccCcchh
Confidence            999999987643

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.77  E-value=1.9e-19  Score=123.38  Aligned_cols=77  Identities=16%  Similarity=0.074  Sum_probs=71.6

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.+.+.|++|||+|++.++|..|+..  +|+..+.||+|.|.||+..
T Consensus         8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V~~a~~~   84 (111)
T 1whx_A            8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRH--LAYSKFHHVPLYLEWAPIG   84 (111)
T ss_dssp             EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHH--HTTCBSSSSBCEEEEEETT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHH--hCCCEECCeEEEEEECCCC
Confidence            3467999999999999999999999999999999999999999999999999999864  8999999999999999753

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.77  E-value=2.3e-19  Score=121.36  Aligned_cols=77  Identities=17%  Similarity=0.181  Sum_probs=66.7

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCc--eeEEEEecc------CceEEEeecchhhhhcccccccccc----eeeCC
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGR--VTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNV----LVLKG   95 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~--V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~----~~i~G   95 (118)
                      ..=.+|||+|||+++||++|.++|++||.  +.+++++++      ||+|||+|.+.++|..|+..  +|+    ..|.|
T Consensus         7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~--lng~~~~~~i~G   84 (95)
T 2lkz_A            7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQI--LQSLHPPLKIDG   84 (95)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHH--HHSSSSCEEETT
T ss_pred             CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHH--hcCCCCCceECC
Confidence            44568999999999999999999999995  678988753      78999999999999999865  444    57999


Q ss_pred             eeeEEEecccc
Q psy9171          96 KNQVSLISGYR  106 (118)
Q Consensus        96 r~v~V~~S~~~  106 (118)
                      |+|.|.||+.+
T Consensus        85 r~i~V~~Akss   95 (95)
T 2lkz_A           85 KTIGVDFAKSA   95 (95)
T ss_dssp             EEEEEEECCCC
T ss_pred             EEEEEEEccCC
Confidence            99999999863

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=99.77  E-value=8e-19  Score=119.93  Aligned_cols=78  Identities=15%  Similarity=0.154  Sum_probs=71.9

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      ..++++|||+|||+++|+++|.++|++||.|.++.+.  ||+|||+|.+.++|..|+..  +|+..+.|++|.|.||+.+
T Consensus        28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V~~a~~~  103 (108)
T 2jvo_A           28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEE--VHGKSFANQPLEVVYSKLP  103 (108)
T ss_dssp             CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHH--HTTCEETTEECEEESCSCC
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHH--cCCCEECCeEEEEEEecCC
Confidence            3778999999999999999999999999999999998  89999999999999999854  8899999999999999876


Q ss_pred             ch
Q psy9171         107 NR  108 (118)
Q Consensus       107 ~~  108 (118)
                      ..
T Consensus       104 ~~  105 (108)
T 2jvo_A          104 AK  105 (108)
T ss_dssp             C-
T ss_pred             CC
Confidence            54

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.77  E-value=6.4e-19  Score=117.85  Aligned_cols=80  Identities=19%  Similarity=0.125  Sum_probs=73.1

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-------CceEEEeecchhhhhcccccccc-cceeeCCeee
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-------KNQLLLHLEAEIIHLGIPFGRVT-NVLVLKGKNQ   98 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-------kgqAFVEm~~~e~A~~ai~~~~~-n~~~i~Gr~v   98 (118)
                      ..++++|||+|||+++|+++|.++|++||.|.++.++.+       +|+|||+|.+.++|..|+..  + |+..+.|++|
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~~~~~~~g~~l   89 (107)
T 2cph_A           12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA--LCHSTHLYGRRL   89 (107)
T ss_dssp             SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHH--HHTCCBSSSCBC
T ss_pred             CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHH--hccCCeECCCEE
Confidence            367899999999999999999999999999999999865       79999999999999999864  7 8999999999


Q ss_pred             EEEeccccch
Q psy9171          99 VSLISGYRNR  108 (118)
Q Consensus        99 ~V~~S~~~~~  108 (118)
                      .|.+|+.+..
T Consensus        90 ~v~~a~~~~~   99 (107)
T 2cph_A           90 VLEWADSEVT   99 (107)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEeCCCCCC
Confidence            9999987643

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1.4e-18  Score=115.16  Aligned_cols=79  Identities=20%  Similarity=0.160  Sum_probs=71.8

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      ...++++|||+|||+++|+++|.++|++||.|.++.++.+      ||+|||+|++.++|..|+.   +|+..+.|++|.
T Consensus         6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~---~~~~~~~g~~l~   82 (99)
T 2dgs_A            6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN---MHFHDIMGKKVE   82 (99)
T ss_dssp             CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH---HCCCBSSSCBCE
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH---hCCCEECCeEEE
Confidence            3378999999999999999999999999999999999853      7899999999999999983   689999999999


Q ss_pred             EEeccccc
Q psy9171         100 SLISGYRN  107 (118)
Q Consensus       100 V~~S~~~~  107 (118)
                      |.+++.+.
T Consensus        83 V~~a~~~~   90 (99)
T 2dgs_A           83 VKRAEPRD   90 (99)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCCc
Confidence            99997653

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.77  E-value=9.2e-19  Score=124.55  Aligned_cols=81  Identities=14%  Similarity=0.124  Sum_probs=72.6

Q ss_pred             CCCCCCcEE--EeCCCCCcccHHHHHHhccCCCceeEEEEeccCc-eEEEeecchhhhhcccccccccceeeCC--eeeE
Q psy9171          25 SDFKPSRVI--HIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKN-QLLLHLEAEIIHLGIPFGRVTNVLVLKG--KNQV   99 (118)
Q Consensus        25 ~~~~PS~vL--~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kg-qAFVEm~~~e~A~~ai~~~~~n~~~i~G--r~v~   99 (118)
                      ...+||++|  ||+|||+.+|+++|.++|++||.|.++.+....| ||||||++.++|..|+..  +|+..|.|  ++|+
T Consensus        18 ~~~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~--LnG~~i~g~~~~l~   95 (124)
T 2e5i_A           18 DPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAA--LNGADIYAGCCTLK   95 (124)
T ss_dssp             CCCCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHH--HTTCCCBTTBSEEE
T ss_pred             CCCCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHH--hCCCEecCCCeEEE
Confidence            344889995  5899999999999999999999999999987668 599999999999999865  99999988  6999


Q ss_pred             EEeccccc
Q psy9171         100 SLISGYRN  107 (118)
Q Consensus       100 V~~S~~~~  107 (118)
                      |+||+.++
T Consensus        96 V~~Ak~~~  103 (124)
T 2e5i_A           96 IEYARPTR  103 (124)
T ss_dssp             EECCSCSC
T ss_pred             EEEecCCc
Confidence            99998875

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.76  E-value=5.5e-19  Score=119.74  Aligned_cols=93  Identities=17%  Similarity=0.199  Sum_probs=78.4

Q ss_pred             heeeeeccCCCCCCCCCCcEEEeCCCCCcccHHHHHHhccCCCce----eEEEEecc--CceEEEeecchhhhhcccccc
Q psy9171          13 VMVVQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRV----TNVLVLKG--KNQLLLHLEAEIIHLGIPFGR   86 (118)
Q Consensus        13 ~~~~~~~~~~~~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V----~~v~l~~~--kgqAFVEm~~~e~A~~ai~~~   86 (118)
                      .+.+......+....+|+++|||+|||+++|+++|.++|++||.|    ..+.+..+  +|+|||+|++.++|..|+.. 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-   86 (115)
T 2cpx_A            8 EEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL-   86 (115)
T ss_dssp             SSSCCCSCCCCCCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHH-
T ss_pred             hhhhhcccccccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHH-
Confidence            344555555555566889999999999999999999999999999    66666653  69999999999999999864 


Q ss_pred             cccceeeCCeeeEEEeccccc
Q psy9171          87 VTNVLVLKGKNQVSLISGYRN  107 (118)
Q Consensus        87 ~~n~~~i~Gr~v~V~~S~~~~  107 (118)
                       +|+..+.|++|.|.||+.+.
T Consensus        87 -l~g~~~~g~~l~v~~a~~~~  106 (115)
T 2cpx_A           87 -VNGYKLYGKILVIEFGKNKK  106 (115)
T ss_dssp             -STTCBCSSCBCEEEECCCCS
T ss_pred             -hCCCEeCCcEEEEEEccCCC
Confidence             88999999999999998754

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.76  E-value=4.8e-19  Score=117.78  Aligned_cols=81  Identities=11%  Similarity=0.115  Sum_probs=73.2

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ   98 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v   98 (118)
                      ...+++++|||+|||+++|+++|.++|++||.|.++.++.+      +++|||+|++.++|..|+..  +|+..+.|++|
T Consensus         7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l   84 (102)
T 1x5s_A            7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA--MNGKSVDGRQI   84 (102)
T ss_dssp             CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHH--HTTCCTTSCCC
T ss_pred             CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH--hCCCEECCeEE
Confidence            33468899999999999999999999999999999999863      68999999999999999854  88999999999


Q ss_pred             EEEeccccc
Q psy9171          99 VSLISGYRN  107 (118)
Q Consensus        99 ~V~~S~~~~  107 (118)
                      .|.+|+.++
T Consensus        85 ~v~~a~~~~   93 (102)
T 1x5s_A           85 RVDQAGKSS   93 (102)
T ss_dssp             EEEEEECCC
T ss_pred             EEEECCCCC
Confidence            999998754

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=99.76  E-value=1.3e-18  Score=116.24  Aligned_cols=78  Identities=14%  Similarity=0.198  Sum_probs=72.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCC---eeeE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKG---KNQV   99 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G---r~v~   99 (118)
                      +++++|||+|||+++|+++|.++|++||.|.++.+..+     +|+|||+|.+.++|..|+..  +|+..+.|   ++|.
T Consensus        13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~--l~g~~~~gg~~~~l~   90 (105)
T 2dnh_A           13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA--LHGSQTMPGASSSLV   90 (105)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHH--HSSCCCCTTCSSCCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHH--HcCCccCCCCCccEE
Confidence            67899999999999999999999999999999999875     79999999999999999854  88999998   9999


Q ss_pred             EEeccccc
Q psy9171         100 SLISGYRN  107 (118)
Q Consensus       100 V~~S~~~~  107 (118)
                      |.+|+.+.
T Consensus        91 V~~a~~~~   98 (105)
T 2dnh_A           91 VKFADTDK   98 (105)
T ss_dssp             EEESCSSC
T ss_pred             EEECccCc
Confidence            99998654

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.76  E-value=9.5e-19  Score=131.47  Aligned_cols=78  Identities=12%  Similarity=0.103  Sum_probs=72.9

Q ss_pred             CCCcEEEeCCCC-CcccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          28 KPSRVIHIRNIP-NEVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        28 ~PS~vL~V~NLP-~~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      +|+.+|||+||| +++|+++|.++|++||.|.+++++++ ||+|||+|++.++|..|+..  +|+..+.||+|.|.||++
T Consensus         2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~--lng~~~~g~~l~v~~s~~   79 (205)
T 3tyt_A            2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITH--LNNNFMFGQKMNVCVSKQ   79 (205)
T ss_dssp             CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHH--HTTCEETTEECEEEECSC
T ss_pred             CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHH--hCCCEECCceEEEEEccC
Confidence            688999999999 79999999999999999999999875 79999999999999999865  899999999999999987


Q ss_pred             cc
Q psy9171         106 RN  107 (118)
Q Consensus       106 ~~  107 (118)
                      ++
T Consensus        80 ~~   81 (205)
T 3tyt_A           80 PA   81 (205)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=1.1e-18  Score=116.37  Aligned_cols=78  Identities=12%  Similarity=0.112  Sum_probs=72.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc----CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.+..+    +++|||+|.+.++|..|+..  +|+..+.|++|.|.+|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~V~~a   90 (103)
T 2d9p_A           13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTE--MNGRIVATKPLYVALA   90 (103)
T ss_dssp             SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHH--HTTCBSSSSBCEEEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHH--hCCCEeCCcEEEEEEe
Confidence            67889999999999999999999999999999999854    79999999999999999854  8899999999999999


Q ss_pred             cccc
Q psy9171         104 GYRN  107 (118)
Q Consensus       104 ~~~~  107 (118)
                      +.+.
T Consensus        91 ~~~~   94 (103)
T 2d9p_A           91 QRKE   94 (103)
T ss_dssp             SSCC
T ss_pred             cccc
Confidence            8754

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=99.76  E-value=1.5e-18  Score=118.27  Aligned_cols=76  Identities=16%  Similarity=0.123  Sum_probs=69.6

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      .+++++|||+|||+++|+++|.++|++||.|.++.++.+      ||+|||+|.+.++|..|+..  +|+..+.||+|.|
T Consensus        37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~V  114 (118)
T 2khc_A           37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA--MNGFQVGTKRLKV  114 (118)
T ss_dssp             CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH--CCCCEETTEECCE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH--cCCCEECCEEEEE
Confidence            367899999999999999999999999999999999853      68999999999999999864  8899999999999


Q ss_pred             Eecc
Q psy9171         101 LISG  104 (118)
Q Consensus       101 ~~S~  104 (118)
                      .|++
T Consensus       115 ~~ak  118 (118)
T 2khc_A          115 QLKK  118 (118)
T ss_dssp             EEC-
T ss_pred             EecC
Confidence            9985

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=99.76  E-value=1.4e-18  Score=116.46  Aligned_cols=78  Identities=18%  Similarity=0.156  Sum_probs=71.5

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      ...+|+++|||+|||+++|+++|.++|++||.|.++.++.+     +|+|||+|.+.++|..|+..  +|+..+.|++|.
T Consensus        24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~  101 (107)
T 3ulh_A           24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ--YNGVPLDGRPMN  101 (107)
T ss_dssp             CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECE
T ss_pred             CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH--hCCCEeCCcEEE
Confidence            34478999999999999999999999999999999999853     78999999999999999864  789999999999


Q ss_pred             EEecc
Q psy9171         100 SLISG  104 (118)
Q Consensus       100 V~~S~  104 (118)
                      |.+|+
T Consensus       102 V~~a~  106 (107)
T 3ulh_A          102 IQLVT  106 (107)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99986

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.76  E-value=2e-18  Score=116.41  Aligned_cols=79  Identities=10%  Similarity=0.097  Sum_probs=72.2

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc---CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG---KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~---kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      ..++++|||+|||+++|+++|.++|++||.|.++.+...   +++|||+|++.++|..|+..  +|+..+.|++|.|.+|
T Consensus        19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~V~~a   96 (109)
T 1x4a_A           19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYG--RDGYDYDGYRLRVEFP   96 (109)
T ss_dssp             CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHH--HTTCEETTEECEEECC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHH--cCCCEECCeEEEEEEc
Confidence            367899999999999999999999999999999999764   68999999999999999854  8899999999999999


Q ss_pred             cccc
Q psy9171         104 GYRN  107 (118)
Q Consensus       104 ~~~~  107 (118)
                      +.+.
T Consensus        97 ~~~~  100 (109)
T 1x4a_A           97 RSGR  100 (109)
T ss_dssp             CCCC
T ss_pred             ccCC
Confidence            8654

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.76  E-value=1.4e-18  Score=116.78  Aligned_cols=79  Identities=16%  Similarity=0.173  Sum_probs=72.0

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhccccccccc------ceeeC
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTN------VLVLK   94 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n------~~~i~   94 (118)
                      ..|+++|||+|||+++|+++|.++|++||.|.++.++.      .+|+|||+|.+.++|..|+..  +|      +..+.
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~--~~~~~~~~~~~~~   89 (111)
T 1x4h_A           12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA--ASLEAEGGGLKLD   89 (111)
T ss_dssp             CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH--HCTTTTTCCEESS
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH--hccccccCCcEEc
Confidence            36789999999999999999999999999999999984      378999999999999999865  66      99999


Q ss_pred             CeeeEEEeccccc
Q psy9171          95 GKNQVSLISGYRN  107 (118)
Q Consensus        95 Gr~v~V~~S~~~~  107 (118)
                      |++|.|.+++.+.
T Consensus        90 g~~l~v~~a~~~~  102 (111)
T 1x4h_A           90 GRQLKVDLAVTRD  102 (111)
T ss_dssp             SCEEEEECCCCCC
T ss_pred             CEEEEEEECCCCc
Confidence            9999999998754

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=99.76  E-value=4.6e-19  Score=117.65  Aligned_cols=79  Identities=14%  Similarity=0.225  Sum_probs=70.7

Q ss_pred             CCCCCcEEEeCCCCC-cccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          26 DFKPSRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~-~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      ..+|+++|||+|||+ ++|+++|.++|++||.|.++.+.  ||+|||+|++.++|..|+..  +|+..+.|++|.|.+|+
T Consensus         6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~V~~a~   81 (96)
T 2kvi_A            6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEC--ESQEMNFGKKLILEVSS   81 (96)
T ss_dssp             ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHH--HTCSSCBTTTBCEEEEE
T ss_pred             cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHH--cCCCeeCCcEEEEEEcC
Confidence            348999999999999 99999999999999999999985  79999999999999999864  88999999999999997


Q ss_pred             ccch
Q psy9171         105 YRNR  108 (118)
Q Consensus       105 ~~~~  108 (118)
                      .+.+
T Consensus        82 ~~~~   85 (96)
T 2kvi_A           82 SNAR   85 (96)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            6544

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.76  E-value=1.2e-18  Score=118.55  Aligned_cols=79  Identities=15%  Similarity=0.173  Sum_probs=72.4

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc----CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      ...++++|||+|||+++|+++|.++|++||.|.++.+..+    ||+|||+|++.++|..|+..  +|+..+.|++|.|.
T Consensus        25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V~  102 (109)
T 2err_A           25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK--LHGTVVEGRKIEVN  102 (109)
T ss_dssp             CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHH--HTTCEETTEECEEE
T ss_pred             CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHH--cCCCEECCEEEEEE
Confidence            3367899999999999999999999999999999999864    79999999999999999854  88999999999999


Q ss_pred             ecccc
Q psy9171         102 ISGYR  106 (118)
Q Consensus       102 ~S~~~  106 (118)
                      +|+.+
T Consensus       103 ~a~~~  107 (109)
T 2err_A          103 NATAR  107 (109)
T ss_dssp             ECCCS
T ss_pred             ECCCC
Confidence            99765

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.76  E-value=4.3e-19  Score=116.49  Aligned_cols=78  Identities=14%  Similarity=-0.046  Sum_probs=68.6

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccc-eeeCCeeeEEEecccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNV-LVLKGKNQVSLISGYR  106 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~-~~i~Gr~v~V~~S~~~  106 (118)
                      ++++.|||+|||+++|+++|.++|++||.|.....+..+++|||+|++.++|..|+..  +|+ ..+.|++|.|.+|+.+
T Consensus         6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~~g~~l~v~~a~~~   83 (93)
T 2cqh_A            6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIET--LSGKVELHGKIMEVDYSVSK   83 (93)
T ss_dssp             CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHH--HTTTCEETTEECEEEECCCC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHH--ccCCeeECCEEEEEEEccCc
Confidence            7788999999999999999999999999944333345689999999999999999854  888 9999999999999765


Q ss_pred             c
Q psy9171         107 N  107 (118)
Q Consensus       107 ~  107 (118)
                      .
T Consensus        84 ~   84 (93)
T 2cqh_A           84 K   84 (93)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=99.76  E-value=9.3e-19  Score=114.22  Aligned_cols=78  Identities=17%  Similarity=0.058  Sum_probs=72.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      +++++|||+|||+++|+++|.++|++||.|.++.+..    .+++|||+|.+.++|..|+..  +|+..+.|++|.|.++
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~--l~g~~~~g~~l~v~~a   83 (92)
T 2dgv_A            6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRM--MNGMKLSGREIDVRID   83 (92)
T ss_dssp             SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHH--HTTCCBTTBCCCCEEC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHH--hCCCEECCcEEEEEEc
Confidence            7889999999999999999999999999999999986    379999999999999999854  7899999999999999


Q ss_pred             cccc
Q psy9171         104 GYRN  107 (118)
Q Consensus       104 ~~~~  107 (118)
                      +.+.
T Consensus        84 ~~~~   87 (92)
T 2dgv_A           84 RNAS   87 (92)
T ss_dssp             SCCS
T ss_pred             CCCC
Confidence            8754

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.76  E-value=3.2e-18  Score=110.85  Aligned_cols=73  Identities=7%  Similarity=0.060  Sum_probs=66.8

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|++.++|..|+.   .++..+.||+|.|.
T Consensus         9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~---~~~~~~~g~~i~v~   85 (87)
T 3s7r_A            9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD---QKEHRLDGRVIDPK   85 (87)
T ss_dssp             SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH---SSCEEETTEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH---hCCCEECCEEEEEE
Confidence            78899999999999999999999999999999999853      6899999999999999974   46778999999998


Q ss_pred             ec
Q psy9171         102 IS  103 (118)
Q Consensus       102 ~S  103 (118)
                      +|
T Consensus        86 ~A   87 (87)
T 3s7r_A           86 KA   87 (87)
T ss_dssp             EC
T ss_pred             eC
Confidence            76

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=1.1e-18  Score=116.37  Aligned_cols=79  Identities=10%  Similarity=0.162  Sum_probs=72.2

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      ..++++|||+|||+++|+++|.++|++||.|.++.+..+      +|+|||+|.+.++|..|+..  +|+..+.|++|.|
T Consensus        10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~V   87 (103)
T 2dnm_A           10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA--MDGAELDGRELRV   87 (103)
T ss_dssp             CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHH--HSSCCBTTBCCEE
T ss_pred             CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHH--cCCCEECCcEEEE
Confidence            367899999999999999999999999999999999753      68999999999999999864  8899999999999


Q ss_pred             Eeccccc
Q psy9171         101 LISGYRN  107 (118)
Q Consensus       101 ~~S~~~~  107 (118)
                      .+|+...
T Consensus        88 ~~a~~~~   94 (103)
T 2dnm_A           88 QVARYGR   94 (103)
T ss_dssp             EECSSCC
T ss_pred             EECCcCC
Confidence            9998654

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.76  E-value=2.7e-18  Score=116.56  Aligned_cols=78  Identities=15%  Similarity=0.132  Sum_probs=71.8

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|.+.++|..|+..  +|+..+.|++|.|.
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~V~   90 (115)
T 2dgo_A           13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ--MGGQWLGGRQIRTN   90 (115)
T ss_dssp             TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--TTTCEETTEECEEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH--hCCCEECCEEEEEE
Confidence            67899999999999999999999999999999999864      68999999999999999854  88999999999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      +++.+.
T Consensus        91 ~a~~~~   96 (115)
T 2dgo_A           91 WATRKP   96 (115)
T ss_dssp             ESSCCC
T ss_pred             EccCCC
Confidence            997653

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.76  E-value=3e-18  Score=113.78  Aligned_cols=80  Identities=15%  Similarity=0.138  Sum_probs=72.3

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCC--CceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPF--GRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~f--G~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      ...+++++|||+|||+++|+++|.++|++|  |.|.++.+.  ||+|||+|.+.++|..|+..  +|+..+.|++|.|.+
T Consensus        10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~v~~   85 (99)
T 2cpd_A           10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKA--LNGKVLDGSPIEVTL   85 (99)
T ss_dssp             SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHH--HSSEEETTEEEEEEC
T ss_pred             cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHH--hCCCEeCCcEEEEEE
Confidence            344789999999999999999999999999  999998875  68999999999999999864  889999999999999


Q ss_pred             ccccch
Q psy9171         103 SGYRNR  108 (118)
Q Consensus       103 S~~~~~  108 (118)
                      |+.+.+
T Consensus        86 a~~~~~   91 (99)
T 2cpd_A           86 AKPVDK   91 (99)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            987653

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.75  E-value=9.9e-19  Score=116.97  Aligned_cols=77  Identities=18%  Similarity=0.116  Sum_probs=70.8

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.+..+      +|+|||+|.+.++|..|+..  +|+..+.|++|.|.
T Consensus        21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~V~   98 (106)
T 1p27_B           21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG--LNGQDLMGQPISVD   98 (106)
T ss_dssp             TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHH--HTTCBSSSSBCEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHH--hcCCEECCcEEEEE
Confidence            56788999999999999999999999999999999853      68999999999999999864  78999999999999


Q ss_pred             ecccc
Q psy9171         102 ISGYR  106 (118)
Q Consensus       102 ~S~~~  106 (118)
                      +|+.+
T Consensus        99 ~a~~~  103 (106)
T 1p27_B           99 WCFVR  103 (106)
T ss_dssp             ESEES
T ss_pred             eecCC
Confidence            99765

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=7.8e-19  Score=121.41  Aligned_cols=76  Identities=11%  Similarity=0.077  Sum_probs=67.8

Q ss_pred             CCCCCcE-EEeCCCCCcccHHH----HHHhccCC-CceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          26 DFKPSRV-IHIRNIPNEVTEAE----IIHLGIPF-GRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        26 ~~~PS~v-L~V~NLP~~vte~d----L~~Lf~~f-G~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      ..+|+.+ |||+|||+++++++    |.++|++| |+|.++.   + |||||+|++.++|.+|+..  +|+..+.||+|+
T Consensus         4 ~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---g-G~AfV~F~~~esA~~A~~~--l~G~~l~gr~i~   77 (96)
T 2diu_A            4 GSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---G-CSAILRFINQDSAERAQKR--MENEDVFGNRII   77 (96)
T ss_dssp             SCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---T-TCEEEEESSHHHHHHHHHH--HTTCCSSSSCCE
T ss_pred             CCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---c-CEEEEEECCHHHHHHHHHH--hcCCccCCceEE
Confidence            3489999 99999999999988    55899999 5999992   3 9999999999999999854  999999999999


Q ss_pred             EEeccccc
Q psy9171         100 SLISGYRN  107 (118)
Q Consensus       100 V~~S~~~~  107 (118)
                      |+||+.++
T Consensus        78 v~~A~~~s   85 (96)
T 2diu_A           78 VSFTPKNR   85 (96)
T ss_dssp             EESSCCSC
T ss_pred             EEecCCCc
Confidence            99998754

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.75  E-value=1.8e-18  Score=114.88  Aligned_cols=78  Identities=8%  Similarity=0.034  Sum_probs=70.4

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeE--------EEEecc------CceEEEeecchhhhhcccccccccc
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN--------VLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNV   90 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~--------v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~   90 (118)
                      ...+|+.+|||+|||+++|+++|.++|++||.|.+        +.++.+      ||+|||+|.+.++|..|+..  +|+
T Consensus         8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~--l~g   85 (99)
T 2la6_A            8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW--FDG   85 (99)
T ss_dssp             CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHH--HTT
T ss_pred             CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHH--hCC
Confidence            34477899999999999999999999999999999        888753      68999999999999999854  889


Q ss_pred             eeeCCeeeEEEecc
Q psy9171          91 LVLKGKNQVSLISG  104 (118)
Q Consensus        91 ~~i~Gr~v~V~~S~  104 (118)
                      ..+.||+|.|.+|+
T Consensus        86 ~~~~g~~l~V~~A~   99 (99)
T 2la6_A           86 KEFSGNPIKVSFAT   99 (99)
T ss_dssp             CBSSSSBCEEEECC
T ss_pred             CEeCCcEEEEEecC
Confidence            99999999999985

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=3.5e-18  Score=115.60  Aligned_cols=79  Identities=11%  Similarity=-0.005  Sum_probs=72.1

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      ...|+++|||+|||+++|+++|.++|++||.|.++.++.+     +++|||+|++.++|..|+..  +|+..+.|++|.|
T Consensus        11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v   88 (114)
T 2do0_A           11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM--FNGQLLFDRPMHV   88 (114)
T ss_dssp             CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEE
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHH--hCCCEeCCCEEEE
Confidence            3477899999999999999999999999999999999864     78999999999999999854  8899999999999


Q ss_pred             Eecccc
Q psy9171         101 LISGYR  106 (118)
Q Consensus       101 ~~S~~~  106 (118)
                      .+|+..
T Consensus        89 ~~a~~~   94 (114)
T 2do0_A           89 KMDERA   94 (114)
T ss_dssp             EECSCC
T ss_pred             EEcccC
Confidence            999754

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.75  E-value=1.9e-18  Score=111.42  Aligned_cols=77  Identities=12%  Similarity=0.078  Sum_probs=69.6

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-------cCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      ..+++|||+|||+++|+++|.++|++||.|.++.+..       .+|+|||+|++.++|..|+..  +|+..+.|++|.|
T Consensus         2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v   79 (88)
T 4a8x_A            2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH--MDGGQIDGQEITA   79 (88)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHH--HTTCEETTEECEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHH--cCCCeECCeEEEE
Confidence            3567899999999999999999999999999999864       478999999999999999854  8899999999999


Q ss_pred             Eecccc
Q psy9171         101 LISGYR  106 (118)
Q Consensus       101 ~~S~~~  106 (118)
                      .+++..
T Consensus        80 ~~a~~~   85 (88)
T 4a8x_A           80 TAVLAP   85 (88)
T ss_dssp             EEECCC
T ss_pred             EECCCC
Confidence            999754

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.75  E-value=1.5e-18  Score=117.00  Aligned_cols=78  Identities=17%  Similarity=0.132  Sum_probs=71.5

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      +++++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|.+.++|..|+..  +|+..+.|++|.|.
T Consensus        24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V~  101 (110)
T 1oo0_B           24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA--LNGAEIMGQTIQVD  101 (110)
T ss_dssp             TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHH--HTTCEETTEECEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH--cCCCEECCcEEEEE
Confidence            66889999999999999999999999999999999754      69999999999999999864  88999999999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      +|+.+.
T Consensus       102 ~a~~~~  107 (110)
T 1oo0_B          102 WCFVKG  107 (110)
T ss_dssp             ESEESS
T ss_pred             EcccCC
Confidence            997653

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=1.9e-18  Score=113.03  Aligned_cols=77  Identities=23%  Similarity=0.145  Sum_probs=70.9

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      .+++++|||+|||+++|+++|.++|++||.|.++.+.  +++|||+|.+.++|..|+..  +|+..+.|++|.|.+++.+
T Consensus         6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~~a~~~   81 (90)
T 2dnp_A            6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQ--LNGKEVKGKRINVELSTKG   81 (90)
T ss_dssp             SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHH--HTTCEETTEECEEEESCCC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHH--hCCCEECCcEEEEEECCCC
Confidence            3788999999999999999999999999999999998  46999999999999999854  8899999999999999865


Q ss_pred             c
Q psy9171         107 N  107 (118)
Q Consensus       107 ~  107 (118)
                      .
T Consensus        82 ~   82 (90)
T 2dnp_A           82 Q   82 (90)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=99.75  E-value=1.8e-18  Score=124.50  Aligned_cols=81  Identities=14%  Similarity=0.079  Sum_probs=70.2

Q ss_pred             CCCCCCcEEE--eCCCCCcccHHHHHHhccCCCceeEEEEecc-Cce-EEEeecchhhhhcccccccccceeeCC--eee
Q psy9171          25 SDFKPSRVIH--IRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-KNQ-LLLHLEAEIIHLGIPFGRVTNVLVLKG--KNQ   98 (118)
Q Consensus        25 ~~~~PS~vL~--V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-kgq-AFVEm~~~e~A~~ai~~~~~n~~~i~G--r~v   98 (118)
                      ....||++|+  |+|||+.+|+++|.++|++||.|.++.+.++ +++ |||||++.++|..|+..  +|+..|.|  ++|
T Consensus        21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~--LnG~~i~g~~~~L   98 (130)
T 3zzy_A           21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS--LDGQNIYNACCTL   98 (130)
T ss_dssp             ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH--HTTCEEETTEEEE
T ss_pred             ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHH--cCCCeecCCCcEE
Confidence            3447889865  9999999999999999999999999998764 565 99999999999999865  99999998  999


Q ss_pred             EEEeccccc
Q psy9171          99 VSLISGYRN  107 (118)
Q Consensus        99 ~V~~S~~~~  107 (118)
                      +|+||+.++
T Consensus        99 rI~~ak~~~  107 (130)
T 3zzy_A           99 RIDFSKLTS  107 (130)
T ss_dssp             EEEECSCSS
T ss_pred             EEEecCCCc
Confidence            999999864

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=99.75  E-value=1.9e-18  Score=117.28  Aligned_cols=76  Identities=16%  Similarity=0.168  Sum_probs=70.8

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec---cCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK---GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~---~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      +|+++|||+|||+++|+++|.++|++||.|.++.++.   .+|+|||+|.+.++|..|+..  +|+..+.|++|.|.||+
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~v~~a~   83 (115)
T 3lqv_A            6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDH--LSGFNVSNRYLVVLYYN   83 (115)
T ss_dssp             TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHH--HTTCBSSSCBCEEEECC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHH--cCCCEECCeEEEEEEec
Confidence            6789999999999999999999999999999999975   378999999999999999864  88999999999999997


Q ss_pred             c
Q psy9171         105 Y  105 (118)
Q Consensus       105 ~  105 (118)
                      .
T Consensus        84 ~   84 (115)
T 3lqv_A           84 A   84 (115)
T ss_dssp             H
T ss_pred             C
Confidence            5

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.75  E-value=1.9e-18  Score=115.42  Aligned_cols=79  Identities=15%  Similarity=0.074  Sum_probs=72.4

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|++.++|..|+..  +|+..+.|++|.|.
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~   90 (105)
T 1x5u_A           13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI--MDMIKLYGKPIRVN   90 (105)
T ss_dssp             CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH--SSSCBCSSCBCEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH--hCCCeECCeEEEEE
Confidence            67899999999999999999999999999999999763      57999999999999999854  88999999999999


Q ss_pred             eccccch
Q psy9171         102 ISGYRNR  108 (118)
Q Consensus       102 ~S~~~~~  108 (118)
                      +|+.+..
T Consensus        91 ~a~~~~~   97 (105)
T 1x5u_A           91 KASAHNK   97 (105)
T ss_dssp             ETTTTSC
T ss_pred             ECCCCCc
Confidence            9987653

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.75  E-value=6.8e-19  Score=117.17  Aligned_cols=82  Identities=16%  Similarity=0.143  Sum_probs=74.2

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|.+.++|..|+..  +|+..+.|++|.|.
T Consensus         6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~   83 (104)
T 1p1t_A            6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN--LNGREFSGRALRVD   83 (104)
T ss_dssp             HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH--SSSBSCSSSCBEEE
T ss_pred             CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH--hCCCeeCCcEEEEE
Confidence            45789999999999999999999999999999999854      78999999999999999854  88999999999999


Q ss_pred             eccccchHHH
Q psy9171         102 ISGYRNRQSA  111 (118)
Q Consensus       102 ~S~~~~~~~~  111 (118)
                      +|+.+...+-
T Consensus        84 ~a~~~~~~~~   93 (104)
T 1p1t_A           84 NAASEKNKEE   93 (104)
T ss_dssp             ETTCTTHHHH
T ss_pred             eCCCccchhh
Confidence            9998766553

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.75  E-value=4.8e-18  Score=113.72  Aligned_cols=76  Identities=18%  Similarity=0.119  Sum_probs=69.9

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      +|+++|||+|||+++|+++|.++|++|| |.++.++.+       +|+|||+|++.++|..|+ .  +|+..+.|++|.|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~--l~g~~~~g~~l~V   88 (104)
T 1wi8_A           13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-S--LNEESLGNKRIRV   88 (104)
T ss_dssp             SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-G--GGTCEETTEECEE
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-h--cCCCEeCCcEEEE
Confidence            6788999999999999999999999999 999999753       689999999999999998 4  8899999999999


Q ss_pred             Eeccccc
Q psy9171         101 LISGYRN  107 (118)
Q Consensus       101 ~~S~~~~  107 (118)
                      .+++.+.
T Consensus        89 ~~a~~~~   95 (104)
T 1wi8_A           89 DVADQAQ   95 (104)
T ss_dssp             EECCCCC
T ss_pred             EEccCCC
Confidence            9998754

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.75  E-value=3.8e-18  Score=110.47  Aligned_cols=75  Identities=15%  Similarity=0.100  Sum_probs=68.9

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      .+++|||+|||+++|+++|.++|++||.|.++.+..+      +|+|||+|.+.++|..|+ .  +|+..+.|++|.|.+
T Consensus         5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~--~~g~~~~g~~l~V~~   81 (89)
T 3ucg_A            5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-A--LDESLFRGRQIKVIP   81 (89)
T ss_dssp             HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-G--GTTCEETTEECEEEE
T ss_pred             cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-h--cCCCEECCcEEEEEE
Confidence            3578999999999999999999999999999999854      789999999999999998 4  889999999999999


Q ss_pred             cccc
Q psy9171         103 SGYR  106 (118)
Q Consensus       103 S~~~  106 (118)
                      |+..
T Consensus        82 a~~~   85 (89)
T 3ucg_A           82 KRTN   85 (89)
T ss_dssp             TTTT
T ss_pred             ccCC
Confidence            9763

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=99.75  E-value=9.5e-19  Score=124.15  Aligned_cols=82  Identities=13%  Similarity=0.036  Sum_probs=74.9

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      ....++++|||+|||+++|+++|.++|++||.|.++.++.+ ||+|||+|.+.++|..|+..  +|+..+.|++|.|.+|
T Consensus        68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~~a  145 (150)
T 2i2y_A           68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRE--LDGRTLCGCRVRVELS  145 (150)
T ss_dssp             SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHH--HSSSCSSSSCCEEEEC
T ss_pred             cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHH--cCCCEECCeEEEEEEc
Confidence            34477899999999999999999999999999999999987 89999999999999999854  8899999999999999


Q ss_pred             cccch
Q psy9171         104 GYRNR  108 (118)
Q Consensus       104 ~~~~~  108 (118)
                      +.+.|
T Consensus       146 ~~~~r  150 (150)
T 2i2y_A          146 NGEKR  150 (150)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            87653

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.75  E-value=4.1e-18  Score=115.37  Aligned_cols=77  Identities=8%  Similarity=-0.006  Sum_probs=71.2

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCC-----eeeEEEe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKG-----KNQVSLI  102 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G-----r~v~V~~  102 (118)
                      .++..|||+|||+++|+++|.++|++||.|..+.++.+ ++|||+|++.++|..|+..  +|+..+.|     ++|.|.+
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~--l~g~~~~g~~~~~~~i~V~~   89 (108)
T 1x4c_A           13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRK--LDNTKFRSHEGETAYIRVKV   89 (108)
T ss_dssp             SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHH--SSSEEEECTTSCEEEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHH--HCcCCccCCcCcceEEEEEe
Confidence            44778999999999999999999999999999999887 9999999999999999864  89999999     9999999


Q ss_pred             ccccc
Q psy9171         103 SGYRN  107 (118)
Q Consensus       103 S~~~~  107 (118)
                      ++.+.
T Consensus        90 a~~~~   94 (108)
T 1x4c_A           90 DGPRS   94 (108)
T ss_dssp             SSCCS
T ss_pred             CCCCC
Confidence            97654

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.75  E-value=2.9e-18  Score=116.59  Aligned_cols=80  Identities=15%  Similarity=0.208  Sum_probs=72.4

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      ..+++++|||+|||+++|+++|.++|++||.|.++.++.+      |++|||+|.+.++|..|+..  +|+..+.|++|.
T Consensus        21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~   98 (115)
T 2cpz_A           21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS--MNGFQIGMKRLK   98 (115)
T ss_dssp             CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH--HTTCEETTEECE
T ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHH--cCCCEECCEEEE
Confidence            3367899999999999999999999999999999999864      47999999999999999854  889999999999


Q ss_pred             EEeccccc
Q psy9171         100 SLISGYRN  107 (118)
Q Consensus       100 V~~S~~~~  107 (118)
                      |.+++.+.
T Consensus        99 V~~a~~~~  106 (115)
T 2cpz_A           99 VQLKRSKN  106 (115)
T ss_dssp             EECCCCSC
T ss_pred             EEEcCCCC
Confidence            99998654

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=99.74  E-value=3.4e-18  Score=115.70  Aligned_cols=78  Identities=19%  Similarity=0.210  Sum_probs=70.7

Q ss_pred             CCCCCCcEEEeCCCCCc-ccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          25 SDFKPSRVIHIRNIPNE-VTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~-vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      ...+++++|||+|||++ +|+++|.++|++||.|.++.+  .+++|||+|++.++|..|+..  +|+..+.|++|.|.++
T Consensus        22 ~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~V~~a   97 (110)
T 1wf1_A           22 DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLG--ENGRVLAGQTLDINMA   97 (110)
T ss_dssp             CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHH--HTTCEETTEECCEEES
T ss_pred             CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHH--cCCCEECCeEEEEEEC
Confidence            33456789999999999 999999999999999999998  689999999999999999854  8899999999999999


Q ss_pred             ccc
Q psy9171         104 GYR  106 (118)
Q Consensus       104 ~~~  106 (118)
                      +..
T Consensus        98 ~~~  100 (110)
T 1wf1_A           98 GEP  100 (110)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            743

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=99.74  E-value=4.1e-18  Score=118.19  Aligned_cols=75  Identities=17%  Similarity=0.194  Sum_probs=68.6

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      .+++++|||+|||+++|+++|.++|++||.|.++.++.+      ||+|||+|++.++|..|+..  +|+..+.||+|.|
T Consensus        60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v  137 (140)
T 2ku7_A           60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN--MNESELFGRTIRV  137 (140)
T ss_dssp             CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH--STEEEETTEEEEE
T ss_pred             CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH--hCCCEECCEEEEE
Confidence            367899999999999999999999999999999999753      79999999999999999854  8899999999999


Q ss_pred             Eec
Q psy9171         101 LIS  103 (118)
Q Consensus       101 ~~S  103 (118)
                      .+|
T Consensus       138 ~~A  140 (140)
T 2ku7_A          138 NLA  140 (140)
T ss_dssp             EC-
T ss_pred             EeC
Confidence            986

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.74  E-value=1.3e-18  Score=114.90  Aligned_cols=79  Identities=13%  Similarity=0.143  Sum_probs=69.7

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      ..+++.+|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|++.++|..|+..  +|+..+.||+|.
T Consensus        11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~--l~g~~~~g~~l~   88 (98)
T 2cqp_A           11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID--LNDRPIGSRKVK   88 (98)
T ss_dssp             CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHH--TTTCEETTEECE
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHH--hCCCeeCCeEEE
Confidence            3356788999999999999999999999999987766532      69999999999999999854  889999999999


Q ss_pred             EEecccc
Q psy9171         100 SLISGYR  106 (118)
Q Consensus       100 V~~S~~~  106 (118)
                      |.+|+.+
T Consensus        89 V~~a~~~   95 (98)
T 2cqp_A           89 LVLGSGP   95 (98)
T ss_dssp             EEESSCS
T ss_pred             EEEcCCC
Confidence            9999764

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.74  E-value=4.8e-18  Score=110.65  Aligned_cols=76  Identities=16%  Similarity=0.195  Sum_probs=68.6

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.++.+ ||+|||+|++.++|.+|..    ....++|++|.+.+++.+
T Consensus         3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~----~~~~~~g~~l~v~~a~~~   78 (88)
T 1wf0_A            3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG----EDLIIKGISVHISNAEPK   78 (88)
T ss_dssp             SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT----CEEEETTEEEEEECCCCC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc----CCceeCCEEEEEEecCCC
Confidence            67899999999999999999999999999999999865 8999999999999998743    267889999999999765


Q ss_pred             c
Q psy9171         107 N  107 (118)
Q Consensus       107 ~  107 (118)
                      .
T Consensus        79 ~   79 (88)
T 1wf0_A           79 H   79 (88)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.74  E-value=9.1e-18  Score=112.18  Aligned_cols=78  Identities=12%  Similarity=0.087  Sum_probs=70.6

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      ...|+++|||+|||+++|+++|.++|++|| |.++.++.+      +|+|||+|++.++|..|+ .  +|+..+.|++|.
T Consensus        11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~--l~g~~~~g~~l~   86 (103)
T 2dng_A           11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-T--YDGALLGDRSLR   86 (103)
T ss_dssp             CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-G--GTTCEETTEECE
T ss_pred             CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-h--hCCCeECCeEEE
Confidence            336789999999999999999999999997 999999854      579999999999999998 4  899999999999


Q ss_pred             EEeccccc
Q psy9171         100 SLISGYRN  107 (118)
Q Consensus       100 V~~S~~~~  107 (118)
                      |.+|+.+.
T Consensus        87 V~~a~~~~   94 (103)
T 2dng_A           87 VDIAEGRK   94 (103)
T ss_dssp             EEECCCCC
T ss_pred             EEEecCCC
Confidence            99998654

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.74  E-value=2e-18  Score=117.66  Aligned_cols=78  Identities=10%  Similarity=0.179  Sum_probs=71.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHH---HhccCCCceeEEEEeccC---------ceEEEeecchhhhhcccccccccceeeCC
Q psy9171          28 KPSRVIHIRNIPNEVTEAEII---HLGIPFGRVTNVLVLKGK---------NQLLLHLEAEIIHLGIPFGRVTNVLVLKG   95 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~---~Lf~~fG~V~~v~l~~~k---------gqAFVEm~~~e~A~~ai~~~~~n~~~i~G   95 (118)
                      .++++|||+|||+++|+++|.   ++|++||.|.++.+.+++         |+|||+|++.++|..|+..  +|+..+.|
T Consensus        13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~--lng~~~~g   90 (111)
T 2cpi_A           13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC--VNNVVVDG   90 (111)
T ss_dssp             CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH--HTTEEETT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHH--hCCCEECC
Confidence            457789999999999999999   999999999999998543         6999999999999999864  89999999


Q ss_pred             eeeEEEeccccc
Q psy9171          96 KNQVSLISGYRN  107 (118)
Q Consensus        96 r~v~V~~S~~~~  107 (118)
                      |+|.|.+|+.+.
T Consensus        91 r~l~V~~a~~k~  102 (111)
T 2cpi_A           91 RTLKASLGTTKY  102 (111)
T ss_dssp             EEEEEESCCCCS
T ss_pred             EEEEEEeccccc
Confidence            999999998764

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.74  E-value=8.3e-19  Score=115.05  Aligned_cols=77  Identities=14%  Similarity=0.122  Sum_probs=66.9

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      .+|+.+|||+|||+++|++||.++|++||.|.++.++.      .+|+|||+|.+.++|..|+..  +|+..+.||+|.|
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~--l~g~~~~gr~l~v   89 (95)
T 2ek1_A           12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID--LNDRPIGSRKVKL   89 (95)
T ss_dssp             ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHH--hCCCeECCcEEEE
Confidence            35678999999999999999999999999998777764      268999999999999999864  8899999999999


Q ss_pred             Eeccc
Q psy9171         101 LISGY  105 (118)
Q Consensus       101 ~~S~~  105 (118)
                      .+|++
T Consensus        90 ~~a~s   94 (95)
T 2ek1_A           90 SGPSS   94 (95)
T ss_dssp             ECCC-
T ss_pred             EeccC
Confidence            99864

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=99.74  E-value=6.8e-18  Score=111.75  Aligned_cols=77  Identities=13%  Similarity=0.244  Sum_probs=64.4

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      .+|..+|||+|||+++||++|.++|++||.|.++.++.+ ||+|||+|++.++|.++. +   ....++|+++.+.+|+.
T Consensus         8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~~-~---~~~~~~g~~v~v~~a~~   83 (89)
T 3d2w_A            8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLC-G---EDLIIKGISVHISNAEP   83 (89)
T ss_dssp             ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHHT-T---CEEEETTEEEEEEECC-
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHHc-C---CCcccCCEEEEEEEcCC
Confidence            367889999999999999999999999999999999875 899999999999999653 2   26778899999999976


Q ss_pred             cc
Q psy9171         106 RN  107 (118)
Q Consensus       106 ~~  107 (118)
                      +.
T Consensus        84 k~   85 (89)
T 3d2w_A           84 KH   85 (89)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.74  E-value=3.5e-18  Score=117.83  Aligned_cols=79  Identities=15%  Similarity=0.098  Sum_probs=72.6

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.+..+     +|+|||+|++.++|..|+..  +|+..+.|++|.|.+
T Consensus         5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~--l~g~~~~g~~l~V~~   82 (116)
T 2fy1_A            5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD--MNGKSLHGKAIKVEQ   82 (116)
T ss_dssp             CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHH--CSSCBCSSSBCEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH--hCCCEECCEEEEEEE
Confidence            67789999999999999999999999999999999874     49999999999999999854  889999999999999


Q ss_pred             ccccch
Q psy9171         103 SGYRNR  108 (118)
Q Consensus       103 S~~~~~  108 (118)
                      |+.+..
T Consensus        83 a~~~~~   88 (116)
T 2fy1_A           83 AKKPSF   88 (116)
T ss_dssp             CCCSSC
T ss_pred             CCCCCC
Confidence            987654

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.73  E-value=7.9e-19  Score=113.31  Aligned_cols=75  Identities=11%  Similarity=0.150  Sum_probs=68.8

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      +|+++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|++.++|..|+..  +|+..+.||.+.+.
T Consensus         3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~~~~~   80 (85)
T 1x4e_A            3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA--LKASGVQAQMAKQS   80 (85)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHH--HHHHTCCEESCCSS
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH--hcCCeEeeEEEeec
Confidence            68899999999999999999999999999999999864      78999999999999999854  88999999999887


Q ss_pred             ecc
Q psy9171         102 ISG  104 (118)
Q Consensus       102 ~S~  104 (118)
                      +++
T Consensus        81 ~~~   83 (85)
T 1x4e_A           81 GPS   83 (85)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            765

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=99.73  E-value=2.9e-18  Score=118.03  Aligned_cols=79  Identities=18%  Similarity=0.100  Sum_probs=72.0

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      ..+++.+|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|.+.++|..|+..  +|+..+.|++|.
T Consensus        18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~   95 (126)
T 3ex7_B           18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG--LNGQDLMGQPIS   95 (126)
T ss_dssp             CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHH--HTTCBSSSSBCE
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH--hCCCeeCCeEEE
Confidence            3367889999999999999999999999999999999854      78999999999999999854  889999999999


Q ss_pred             EEecccc
Q psy9171         100 SLISGYR  106 (118)
Q Consensus       100 V~~S~~~  106 (118)
                      |.||+.+
T Consensus        96 v~~a~~~  102 (126)
T 3ex7_B           96 VDWCFVR  102 (126)
T ss_dssp             EEESEES
T ss_pred             EEEecCC
Confidence            9999754

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=1.7e-18  Score=115.42  Aligned_cols=78  Identities=10%  Similarity=0.081  Sum_probs=71.5

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccC-CCceeEEEEecc-----CceEEEeecchhhhhccccccccccee-eCCeeeEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIP-FGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLV-LKGKNQVS  100 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~-fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~-i~Gr~v~V  100 (118)
                      .|+.+|||+|||+++|+++|.++|++ ||.|.++.++.+     +|+|||+|++.++|..|+..  +|+.. +.|++|.|
T Consensus         7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~~g~~l~v   84 (104)
T 2dhg_A            7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE--CQGAVGLGSKPVRL   84 (104)
T ss_dssp             SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHH--TTTCCSSSSSCCCC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHH--ccCCcccCCEeEEE
Confidence            78889999999999999999999999 999999999864     79999999999999999864  88988 99999999


Q ss_pred             Eeccccc
Q psy9171         101 LISGYRN  107 (118)
Q Consensus       101 ~~S~~~~  107 (118)
                      .+|+.+.
T Consensus        85 ~~a~~~~   91 (104)
T 2dhg_A           85 SVAIPKA   91 (104)
T ss_dssp             CBCCCCC
T ss_pred             EEccCCC
Confidence            9996543

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=99.73  E-value=5.2e-18  Score=118.51  Aligned_cols=79  Identities=14%  Similarity=0.148  Sum_probs=72.1

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      ..++++|||+|||+++|+++|.++|++||.|.++.++.+      ||+|||+|++.++|..|+..  +|+..+.|++|.|
T Consensus        39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v  116 (139)
T 1u6f_A           39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG--LNGFNILNKRLKV  116 (139)
T ss_dssp             TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH--TTTEECSSCEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH--hCCCEECCeEEEE
Confidence            356789999999999999999999999999999999853      78999999999999999864  8899999999999


Q ss_pred             Eeccccc
Q psy9171         101 LISGYRN  107 (118)
Q Consensus       101 ~~S~~~~  107 (118)
                      .+|+.+.
T Consensus       117 ~~a~~~~  123 (139)
T 1u6f_A          117 ALAASGH  123 (139)
T ss_dssp             EESSCCC
T ss_pred             EECCCCC
Confidence            9998754

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.73  E-value=4e-18  Score=114.50  Aligned_cols=79  Identities=15%  Similarity=0.059  Sum_probs=71.3

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCc-eeEEEEe-------ccCceEEEeecchhhhhccccccccc--ceeeCCee
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGR-VTNVLVL-------KGKNQLLLHLEAEIIHLGIPFGRVTN--VLVLKGKN   97 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~-V~~v~l~-------~~kgqAFVEm~~~e~A~~ai~~~~~n--~~~i~Gr~   97 (118)
                      ++++.|||+|||+++|+++|.++|++||. |.++.++       ..||+|||+|.+.++|..|+..  +|  +..+.|++
T Consensus         6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~~g~~~~~g~~   83 (109)
T 2dis_A            6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK--LMPGRIQLWGHQ   83 (109)
T ss_dssp             CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT--TTTCCSCBTTBC
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH--hhCCCceecCCe
Confidence            67889999999999999999999999998 9999998       3489999999999999999864  64  58999999


Q ss_pred             eEEEeccccch
Q psy9171          98 QVSLISGYRNR  108 (118)
Q Consensus        98 v~V~~S~~~~~  108 (118)
                      |.|.+|+.+..
T Consensus        84 l~V~~a~~~~~   94 (109)
T 2dis_A           84 IAVDWAEPEID   94 (109)
T ss_dssp             CEEEESCSSCS
T ss_pred             EEEEEcCCCCC
Confidence            99999987653

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.73  E-value=9.5e-18  Score=114.22  Aligned_cols=76  Identities=12%  Similarity=0.166  Sum_probs=69.6

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.++.+      +++|||+|++.++|..|+..  +|+ .+.|++|.|.
T Consensus        15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~--~~~-~~~g~~l~V~   91 (116)
T 2cqd_A           15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD--PNP-IIDGRKANVN   91 (116)
T ss_dssp             CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTC--SSC-EETTEECEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh--CCC-cCCCEEEEEE
Confidence            67899999999999999999999999999999999864      57999999999999999865  677 8999999999


Q ss_pred             ecccc
Q psy9171         102 ISGYR  106 (118)
Q Consensus       102 ~S~~~  106 (118)
                      +|...
T Consensus        92 ~a~~~   96 (116)
T 2cqd_A           92 LAYLG   96 (116)
T ss_dssp             ESTTT
T ss_pred             EcccC
Confidence            99654

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.73  E-value=3.6e-18  Score=116.50  Aligned_cols=75  Identities=16%  Similarity=0.136  Sum_probs=68.9

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.++.+     ||+|||+|++.++|..|+.   +|+..+.||+|.|.+
T Consensus         9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~---~~~~~~~gr~l~V~~   85 (103)
T 1s79_A            9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE---TPGQKYKETDLLILF   85 (103)
T ss_dssp             SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT---SSCCCCTTTTCEEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH---cCCCEECCEEEEEEE
Confidence            56789999999999999999999999999999999863     7999999999999999985   689999999999998


Q ss_pred             ccc
Q psy9171         103 SGY  105 (118)
Q Consensus       103 S~~  105 (118)
                      +..
T Consensus        86 ~~~   88 (103)
T 1s79_A           86 KDD   88 (103)
T ss_dssp             HHH
T ss_pred             chH
Confidence            753

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.73  E-value=4.8e-18  Score=114.97  Aligned_cols=78  Identities=10%  Similarity=0.046  Sum_probs=71.1

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCcee--------EEEEecc------CceEEEeecchhhhhcccccccccceee
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVT--------NVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVL   93 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~--------~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i   93 (118)
                      .++++|||+|||+++|+++|.++|++||.|.        .+.++.+      +|+|||+|.+.++|..|+..  +|+..+
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~--l~g~~~   90 (113)
T 2cpe_A           13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEW--FDGKDF   90 (113)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHH--HTTCEE
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHH--cCCCcc
Confidence            6789999999999999999999999999998        6888754      68999999999999999854  789999


Q ss_pred             CCeeeEEEeccccc
Q psy9171          94 KGKNQVSLISGYRN  107 (118)
Q Consensus        94 ~Gr~v~V~~S~~~~  107 (118)
                      .|++|.|.+++.+.
T Consensus        91 ~g~~l~V~~a~~~~  104 (113)
T 2cpe_A           91 QGSKLKVSLARKKP  104 (113)
T ss_dssp             TTEECEEECSSCCC
T ss_pred             CCCEEEEEECCCCC
Confidence            99999999998754

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.73  E-value=3.8e-18  Score=120.17  Aligned_cols=80  Identities=13%  Similarity=0.098  Sum_probs=72.7

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ   98 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v   98 (118)
                      ...+|+++|||+|||+++|+++|.++|++||.|.++.++.+      ||+|||+|++.++|..|+..  +|+..+.|++|
T Consensus        41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~--lng~~i~g~~l  118 (129)
T 2kxn_B           41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER--ANGMELDGRRI  118 (129)
T ss_dssp             SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHH--HTTCCSSSSCC
T ss_pred             CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH--hCCCEECCEEE
Confidence            34478999999999999999999999999999999999843      78999999999999999864  88999999999


Q ss_pred             EEEecccc
Q psy9171          99 VSLISGYR  106 (118)
Q Consensus        99 ~V~~S~~~  106 (118)
                      .|.+|+.+
T Consensus       119 ~V~~a~~~  126 (129)
T 2kxn_B          119 RVDFSITK  126 (129)
T ss_dssp             EESCCSSS
T ss_pred             EEEEecCC
Confidence            99999764

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=1.3e-17  Score=110.89  Aligned_cols=75  Identities=13%  Similarity=0.060  Sum_probs=67.1

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      .++++|||+|||+++|+++|.++|++||.|   .++.     .+|+|||+|++.++|..|+..  +|+..+.|++|.|.+
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~v~~   87 (101)
T 2fc9_A           13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNS--CNKREIEGRAIRLEL   87 (101)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHH--TSSEEETTEEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHH--hCCCEeCCeEEEEEE
Confidence            678999999999999999999999999988   3332     379999999999999999854  889999999999999


Q ss_pred             ccccc
Q psy9171         103 SGYRN  107 (118)
Q Consensus       103 S~~~~  107 (118)
                      ++.+.
T Consensus        88 a~~~~   92 (101)
T 2fc9_A           88 QGPRG   92 (101)
T ss_dssp             CSSCC
T ss_pred             cCCCC
Confidence            98764

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=99.72  E-value=7.9e-18  Score=108.54  Aligned_cols=71  Identities=18%  Similarity=0.198  Sum_probs=67.3

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCC----C-------ceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPF----G-------RVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK   96 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~f----G-------~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr   96 (118)
                      .++++|||+|||+++|+++|.++|++|    |       .|.++.+..+||+|||+|.+.++|..|+ .  +|+..+.||
T Consensus         4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~--l~g~~~~g~   80 (87)
T 2hzc_A            4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-A--FDGIIFQGQ   80 (87)
T ss_dssp             GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-G--GTTCEETTE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-h--cCCCEECCe
Confidence            578899999999999999999999999    8       9999999999999999999999999998 4  899999999


Q ss_pred             eeEEE
Q psy9171          97 NQVSL  101 (118)
Q Consensus        97 ~v~V~  101 (118)
                      ++.|.
T Consensus        81 ~l~V~   85 (87)
T 2hzc_A           81 SLKIR   85 (87)
T ss_dssp             ECEEE
T ss_pred             EEEEe
Confidence            99886

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.72  E-value=2.4e-18  Score=115.08  Aligned_cols=78  Identities=17%  Similarity=0.097  Sum_probs=67.9

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-------CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ   98 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v   98 (118)
                      ...++++|||+|||+++|+++|.++|++|| |.++.++.+       +|+|||+|.+.++|..|+ .  +|+..+.||+|
T Consensus        15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~--l~g~~~~g~~l   90 (100)
T 2j76_E           15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-S--LNEESLGNRRI   90 (100)
T ss_dssp             -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-H--TTTCCBTTBCC
T ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-h--cCCCEECCeEE
Confidence            346789999999999999999999999999 999999753       689999999999999998 4  88999999999


Q ss_pred             EEEeccccc
Q psy9171          99 VSLISGYRN  107 (118)
Q Consensus        99 ~V~~S~~~~  107 (118)
                      .|.+|+.++
T Consensus        91 ~V~~a~~~~   99 (100)
T 2j76_E           91 RVDVADQAQ   99 (100)
T ss_dssp             CCEECCCSC
T ss_pred             EEEeccCCC
Confidence            999998764

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=99.72  E-value=8.5e-18  Score=109.89  Aligned_cols=76  Identities=14%  Similarity=0.132  Sum_probs=70.3

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      .++++|||+|||+++|+++|.++|++| .|.++.+.+.||+|||+|++.++|..|+..  +|+..+.||++.|.+|...
T Consensus         3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~--l~g~~~~g~~l~V~~a~~~   78 (88)
T 1wg1_A            3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQM--FHQYSFRGKDLIVQLQPTD   78 (88)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHH--HTTEEETTEEEEEEECCCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHH--hCCCeECCcEEEEEEcCCC
Confidence            456789999999999999999999999 999999887899999999999999999864  8999999999999999764

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.72  E-value=2.7e-18  Score=114.85  Aligned_cols=80  Identities=18%  Similarity=0.150  Sum_probs=72.1

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceee---CCeee
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVL---KGKNQ   98 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i---~Gr~v   98 (118)
                      +++++|||+|||+++|+++|.++|++||.|.++.++.+      ||+|||+|++.++|..|+..  +|+..+   .|++|
T Consensus        11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~g~~~~~~~g~~l   88 (106)
T 2dgp_A           11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA--LHEQKTLPGMNRPI   88 (106)
T ss_dssp             TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHH--HTTTCCCTTCSSCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH--hcCCcccCCCCceE
Confidence            67889999999999999999999999999999999863      68999999999999999864  788777   89999


Q ss_pred             EEEeccccchH
Q psy9171          99 VSLISGYRNRQ  109 (118)
Q Consensus        99 ~V~~S~~~~~~  109 (118)
                      .|.+++.+..+
T Consensus        89 ~v~~a~~~~~~   99 (106)
T 2dgp_A           89 QVKPADSESRG   99 (106)
T ss_dssp             EEEECCCCSCC
T ss_pred             EEEECCccccc
Confidence            99999876543

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.72  E-value=1.4e-17  Score=113.97  Aligned_cols=80  Identities=19%  Similarity=0.183  Sum_probs=71.4

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCce-eEEEEec-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRV-TNVLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V-~~v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++|+++|.++|++||.| .++.++.     .||+|||+|++.++|..|+.   .|+..+.||+|.|.
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~---~~~~~~~gr~i~v~   89 (114)
T 2cpy_A           13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER---LHRKKLNGREAFVH   89 (114)
T ss_dssp             SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGG---GCSEEETTEEEEEE
T ss_pred             CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHH---hCCCccCCeEEEEE
Confidence            568899999999999999999999999999 8888875     37999999999999999975   38999999999999


Q ss_pred             eccccchHH
Q psy9171         102 ISGYRNRQS  110 (118)
Q Consensus       102 ~S~~~~~~~  110 (118)
                      +|+.+...+
T Consensus        90 ~a~~~~~~~   98 (114)
T 2cpy_A           90 VVTLEDMRE   98 (114)
T ss_dssp             EECHHHHHH
T ss_pred             ECCHHHHHH
Confidence            997755444

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=4.5e-18  Score=113.79  Aligned_cols=78  Identities=10%  Similarity=0.085  Sum_probs=71.0

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      .+++++|||+|||+++|+++|.++|++||.|.++.++.+      ||+|||+|++.++|..|+..   |+..+.|++|.|
T Consensus        13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~l~V   89 (105)
T 2dh8_A           13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS---RPHTLDGRNIDP   89 (105)
T ss_dssp             SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH---CSEEETTEEEBC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh---CCCeECCEEEEE
Confidence            367899999999999999999999999999999999864      58999999999999999853   899999999999


Q ss_pred             Eeccccc
Q psy9171         101 LISGYRN  107 (118)
Q Consensus       101 ~~S~~~~  107 (118)
                      .+++.+.
T Consensus        90 ~~a~~~~   96 (105)
T 2dh8_A           90 KPCTPRG   96 (105)
T ss_dssp             CCSCCSS
T ss_pred             EEccCCC
Confidence            9997654

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.72  E-value=2.1e-18  Score=115.83  Aligned_cols=77  Identities=14%  Similarity=-0.018  Sum_probs=70.1

Q ss_pred             CCCcEEEeCCCCC------cccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCC
Q psy9171          28 KPSRVIHIRNIPN------EVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKG   95 (118)
Q Consensus        28 ~PS~vL~V~NLP~------~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G   95 (118)
                      ..+++|||+|||+      ++++++|.++|++||.|.++.++.+      ||+|||+|++.++|..|+..  +|+..+.|
T Consensus         4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~--lng~~~~g   81 (100)
T 3ns6_A            4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKS--FHGKRLDL   81 (100)
T ss_dssp             CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH--HTTCBSSS
T ss_pred             CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH--hCCcccCC
Confidence            4577999999999      9999999999999999999999742      69999999999999999864  89999999


Q ss_pred             -eeeEEEecccc
Q psy9171          96 -KNQVSLISGYR  106 (118)
Q Consensus        96 -r~v~V~~S~~~  106 (118)
                       |+|.|.+++.+
T Consensus        82 ~r~l~V~~a~~~   93 (100)
T 3ns6_A           82 KHRLFLYTMKDV   93 (100)
T ss_dssp             SCBCEEEESHHH
T ss_pred             CeEEEEEECchh
Confidence             99999999654

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.72  E-value=3.5e-17  Score=108.46  Aligned_cols=77  Identities=10%  Similarity=0.014  Sum_probs=71.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRN  107 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~~  107 (118)
                      .|+++|||+||  ++|+++|.++|++||.|.++.+.+.||+|||+|++.++|..|+..  +|+..+.|++|.|.+++.+.
T Consensus        13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~--l~g~~~~g~~l~v~~a~~~~   88 (97)
T 1x5p_A           13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE--LNGTQVESVQLKVNIARKQP   88 (97)
T ss_dssp             CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH--TTTEEETTEEEEEECCSSCC
T ss_pred             CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHH--hCCCeECCeEEEEEECCCCC
Confidence            67889999996  899999999999999999999988899999999999999999854  88999999999999998764


Q ss_pred             h
Q psy9171         108 R  108 (118)
Q Consensus       108 ~  108 (118)
                      .
T Consensus        89 ~   89 (97)
T 1x5p_A           89 M   89 (97)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=99.72  E-value=3.1e-18  Score=120.62  Aligned_cols=89  Identities=18%  Similarity=0.145  Sum_probs=74.9

Q ss_pred             eeccCCCCCCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeE--------EEEe---ccCceEEEeecchhhhhccccc
Q psy9171          17 QAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN--------VLVL---KGKNQLLLHLEAEIIHLGIPFG   85 (118)
Q Consensus        17 ~~~~~~~~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~--------v~l~---~~kgqAFVEm~~~e~A~~ai~~   85 (118)
                      .......+....|+.+|||+|||+++|+++|..+|++||.|..        +.+.   ..+|+|||+|.+.++|..|+..
T Consensus        32 ~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~  111 (143)
T 3egn_A           32 TLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKE  111 (143)
T ss_dssp             HCGGGTTCCCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHH
T ss_pred             hcccccccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHH
Confidence            3344444566689999999999999999999999999999875        4433   2479999999999999999864


Q ss_pred             ccccceeeCCeeeEEEeccccc
Q psy9171          86 RVTNVLVLKGKNQVSLISGYRN  107 (118)
Q Consensus        86 ~~~n~~~i~Gr~v~V~~S~~~~  107 (118)
                        +|+..+.|++|.|.||+.+.
T Consensus       112 --lng~~~~g~~l~V~~a~~~~  131 (143)
T 3egn_A          112 --ANGYVLFGKPMVVQFARSAR  131 (143)
T ss_dssp             --HTTBEETTEECEEEECCCSC
T ss_pred             --hCCCEeCCcEEEEEECCCCC
Confidence              89999999999999998754

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.72  E-value=2.1e-18  Score=114.73  Aligned_cols=75  Identities=13%  Similarity=0.078  Sum_probs=70.0

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccccch
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRNR  108 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~~~  108 (118)
                      +|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|++.++|..|+..  +|+..+.|+++.|.+|+.+.+
T Consensus         2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~V~~a~~~~~   77 (101)
T 2hvz_A            2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRG--LDGKVICGSRVRVELSTGMPR   77 (101)
T ss_dssp             EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHH--HHHSCSSSCCCEEEESSSCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHH--HCCCeECCcEEEEEEccCCCC
Confidence            6999999999999999999999999999999986 99999999999999999864  789999999999999987653

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.72  E-value=7.2e-18  Score=122.45  Aligned_cols=100  Identities=19%  Similarity=0.173  Sum_probs=83.4

Q ss_pred             CcceecchheeeeeccCCCC---CCCCCCcEEEeCCCCCcccHHHHHHhccCCC-ceeEEEEec-cCceEEEeecchhhh
Q psy9171           5 GGNVKYTLVMVVQAKLDRQK---SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFG-RVTNVLVLK-GKNQLLLHLEAEIIH   79 (118)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~---~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG-~V~~v~l~~-~kgqAFVEm~~~e~A   79 (118)
                      +...+|+..+..++..+...   ...+|+++|||+|||+++|+++|.++|++|| .|.++.+++ .+|+|||+|++.++|
T Consensus        92 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A  171 (198)
T 1qm9_A           92 GLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEA  171 (198)
T ss_dssp             SCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHH
T ss_pred             cccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHH
Confidence            34455666666555544322   3457899999999999999999999999999 999999976 689999999999999


Q ss_pred             hcccccccccceeeC-CeeeEEEecccc
Q psy9171          80 LGIPFGRVTNVLVLK-GKNQVSLISGYR  106 (118)
Q Consensus        80 ~~ai~~~~~n~~~i~-Gr~v~V~~S~~~  106 (118)
                      ..|+..  +|+..+. |++|.|.||+.+
T Consensus       172 ~~A~~~--l~g~~~~~g~~l~v~~a~~~  197 (198)
T 1qm9_A          172 VQALID--LHNHDLGENHHLRVSFSKST  197 (198)
T ss_dssp             HHHHHH--HTSSCCSSCCSCCEEEECCC
T ss_pred             HHHHHH--hcCCccCCCCeEEEEeeccc
Confidence            999864  8899999 999999999753

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=99.72  E-value=1.5e-17  Score=114.66  Aligned_cols=79  Identities=16%  Similarity=0.128  Sum_probs=72.0

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      ...++.+|||+|||+++|+++|.++|++||.|.++.+..+     +|+|||+|++.++|..|+..  +|+..+.|++|.|
T Consensus        31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V  108 (124)
T 2kt5_A           31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ--YKGVPLDGRPMDI  108 (124)
T ss_dssp             CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHH--HTTEESSSCEEEE
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHH--cCCCEECCcEEEE
Confidence            3467889999999999999999999999999999999863     79999999999999999854  8899999999999


Q ss_pred             Eecccc
Q psy9171         101 LISGYR  106 (118)
Q Consensus       101 ~~S~~~  106 (118)
                      .+|...
T Consensus       109 ~~a~~~  114 (124)
T 2kt5_A          109 QLVASQ  114 (124)
T ss_dssp             EEECCT
T ss_pred             EEeCCC
Confidence            999764

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.72  E-value=1.2e-17  Score=113.65  Aligned_cols=77  Identities=13%  Similarity=0.127  Sum_probs=70.1

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|.+.++|..|+..   |+..+.|++|.|.
T Consensus        25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~---~~~~~~g~~l~V~  101 (116)
T 1x4b_A           25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA---RPHSIDGRVVEPK  101 (116)
T ss_dssp             HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS---CSEEETTEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh---CCcEECCEEEEEE
Confidence            45789999999999999999999999999999999864      68999999999999999853   8999999999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      +++.+.
T Consensus       102 ~a~~~~  107 (116)
T 1x4b_A          102 RAVARE  107 (116)
T ss_dssp             CCSSCC
T ss_pred             ECCCCc
Confidence            997654

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=3e-17  Score=107.22  Aligned_cols=75  Identities=12%  Similarity=0.186  Sum_probs=69.1

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      .++.+|||+|||+++|++||.++|++| .|.++.++.+     +|+|||+|++.++|..|+.   +|+..+.||+|.|.+
T Consensus         8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~---~~g~~~~gr~i~v~~   83 (91)
T 2dgw_A            8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK---CNREYMGGRYIEVFR   83 (91)
T ss_dssp             CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH---SCSEEETTEEEEEEE
T ss_pred             CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH---hCCceeCCcEEEEEE
Confidence            567899999999999999999999999 9999999864     7899999999999999984   889999999999999


Q ss_pred             cccc
Q psy9171         103 SGYR  106 (118)
Q Consensus       103 S~~~  106 (118)
                      |+.+
T Consensus        84 a~~~   87 (91)
T 2dgw_A           84 EKSG   87 (91)
T ss_dssp             ESSC
T ss_pred             CCcC
Confidence            9765

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=99.72  E-value=8.6e-18  Score=125.24  Aligned_cols=78  Identities=17%  Similarity=0.103  Sum_probs=70.3

Q ss_pred             CCCcE--EEeCCCCCcccHHHHHHhccCCCceeEEEEecc--CceEEEeecchhhhhcccccccccceeeCC--eeeEEE
Q psy9171          28 KPSRV--IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG--KNQLLLHLEAEIIHLGIPFGRVTNVLVLKG--KNQVSL  101 (118)
Q Consensus        28 ~PS~v--L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~--kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G--r~v~V~  101 (118)
                      +|+++  |||+|||+++|+++|.++|++||.|.++.+..+  +++|||||++.++|..|+..  +|+..|.|  ++|+|.
T Consensus        42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~--LnG~~i~g~g~~L~V~  119 (164)
T 1sjr_A           42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS--LDGQNIYNACCTLRID  119 (164)
T ss_dssp             CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHH--STTBCSSSSCSCEEEE
T ss_pred             CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHH--hCCCEecCCCcEEEEE
Confidence            67777  679999999999999999999999999999753  57999999999999999865  99999965  999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      ||+.++
T Consensus       120 ~Ak~~~  125 (164)
T 1sjr_A          120 FSKLTS  125 (164)
T ss_dssp             ECSSSS
T ss_pred             EecCCc
Confidence            999764

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.71  E-value=1.2e-17  Score=109.97  Aligned_cols=80  Identities=13%  Similarity=0.093  Sum_probs=70.2

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec--cCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK--GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~--~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      ...++++|||+|||+++|+++|.++|++||.|..+ -..  .+|+|||+|.+.++|..|+..  +|+..+.|++|.|.+|
T Consensus        12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~~a   88 (96)
T 1fjc_A           12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEE--KQGAEIDGRSVSLYYT   88 (96)
T ss_dssp             TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHH--TTEEEETTEEEEEEEC
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHH--hCCCEECCeEEEEEEc
Confidence            33678999999999999999999999999999877 222  379999999999999999864  8899999999999999


Q ss_pred             cccch
Q psy9171         104 GYRNR  108 (118)
Q Consensus       104 ~~~~~  108 (118)
                      +.+.+
T Consensus        89 ~~~~~   93 (96)
T 1fjc_A           89 GEKGG   93 (96)
T ss_dssp             SSSCC
T ss_pred             CCCCC
Confidence            76653

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=6.4e-18  Score=112.07  Aligned_cols=77  Identities=10%  Similarity=0.075  Sum_probs=68.7

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec--cCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK--GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~--~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      +++++|||+|||+++|+++|.++|++||.|. +.++.  .+|+|||+|++.++|..|+..  +|+..+.|++|.|.+++.
T Consensus        17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~V~~a~~   93 (97)
T 2e5j_A           17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSC--LQGLRLGTDTLRVALARQ   93 (97)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHH--HTTCCSSSSCCEEEECCC
T ss_pred             CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHH--hCCCEECCcEEEEEEcCC
Confidence            4588999999999999999999999999996 55553  489999999999999999854  899999999999999986


Q ss_pred             cc
Q psy9171         106 RN  107 (118)
Q Consensus       106 ~~  107 (118)
                      +.
T Consensus        94 ~~   95 (97)
T 2e5j_A           94 QR   95 (97)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.71  E-value=2e-17  Score=110.23  Aligned_cols=76  Identities=14%  Similarity=0.152  Sum_probs=69.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|++.++|..|+.    ++..+.|++|.|.
T Consensus        13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~----~~~~~~g~~l~v~   88 (103)
T 2cqg_A           13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS----QRHMIDGRWCDCK   88 (103)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH----SCEEETTEEEEEE
T ss_pred             CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH----cCCeeCCeEEEEE
Confidence            67889999999999999999999999999999999864      5799999999999999985    3679999999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      +++.+.
T Consensus        89 ~a~~~~   94 (103)
T 2cqg_A           89 LPNSKQ   94 (103)
T ss_dssp             CCCTTC
T ss_pred             ecCCCC
Confidence            997754

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.71  E-value=1.7e-17  Score=124.60  Aligned_cols=100  Identities=19%  Similarity=0.173  Sum_probs=84.4

Q ss_pred             CcceecchheeeeeccCCCC---CCCCCCcEEEeCCCCCcccHHHHHHhccCCC-ceeEEEEec-cCceEEEeecchhhh
Q psy9171           5 GGNVKYTLVMVVQAKLDRQK---SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFG-RVTNVLVLK-GKNQLLLHLEAEIIH   79 (118)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~---~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG-~V~~v~l~~-~kgqAFVEm~~~e~A   79 (118)
                      +...+|+..+.+++..+...   +..+|+++|||+|||+++|+++|.++|++|| .|.++.+++ .+|+|||+|++.++|
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A  202 (229)
T 2adc_A          123 GLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEA  202 (229)
T ss_dssp             TTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHH
T ss_pred             ccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHH
Confidence            34556666666666555322   3457899999999999999999999999999 999999976 789999999999999


Q ss_pred             hcccccccccceeeC-CeeeEEEecccc
Q psy9171          80 LGIPFGRVTNVLVLK-GKNQVSLISGYR  106 (118)
Q Consensus        80 ~~ai~~~~~n~~~i~-Gr~v~V~~S~~~  106 (118)
                      ..|+..  +|+..+. |++|.|.||+.+
T Consensus       203 ~~Ai~~--l~g~~~~~g~~l~v~~a~~~  228 (229)
T 2adc_A          203 VQALID--LHNHDLGENHHLRVSFSKST  228 (229)
T ss_dssp             HHHHHH--HTTCBSSSSCBCEEEECSSC
T ss_pred             HHHHHH--HCCCccCCCCeEEEEEecCC
Confidence            999864  8899999 999999999763

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=99.71  E-value=2e-17  Score=117.98  Aligned_cols=78  Identities=13%  Similarity=-0.040  Sum_probs=71.4

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      ..++++|||+|||+++|+++|.++|++||.|.++.++.+      +++|||+|++.++|..|+..  +|+..|.|++|.|
T Consensus        36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V  113 (156)
T 1h2v_Z           36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY--INGTRLDDRIIRT  113 (156)
T ss_dssp             TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--TTTSEETTEECEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH--hCCCEECCeEEEE
Confidence            367899999999999999999999999999999999753      58999999999999999864  8899999999999


Q ss_pred             Eecccc
Q psy9171         101 LISGYR  106 (118)
Q Consensus       101 ~~S~~~  106 (118)
                      .+|+..
T Consensus       114 ~~a~~~  119 (156)
T 1h2v_Z          114 DWDAGF  119 (156)
T ss_dssp             EEESCC
T ss_pred             EECCCC
Confidence            999754

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.71  E-value=6.8e-18  Score=115.89  Aligned_cols=75  Identities=12%  Similarity=0.115  Sum_probs=69.2

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      ++++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|.+.++|..|+ .  +|+..+.|++|.|.+
T Consensus        35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~--l~g~~~~g~~l~V~~  111 (124)
T 2jwn_A           35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-A--MDETVFRGRTIKVLP  111 (124)
T ss_dssp             HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-T--TTTCEETTEECEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-h--cCCCeECCeEEEEEE
Confidence            3679999999999999999999999999999999753      789999999999999998 3  899999999999999


Q ss_pred             cccc
Q psy9171         103 SGYR  106 (118)
Q Consensus       103 S~~~  106 (118)
                      ++..
T Consensus       112 a~~~  115 (124)
T 2jwn_A          112 KRTN  115 (124)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            9764

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=99.71  E-value=1.6e-17  Score=112.21  Aligned_cols=77  Identities=16%  Similarity=0.103  Sum_probs=69.9

Q ss_pred             CCCcEEEeCCCCCcc------cHHHHHHhccCCCceeEEEEec----cCceEEEeecchhhhhcccccccccceeeCCe-
Q psy9171          28 KPSRVIHIRNIPNEV------TEAEIIHLGIPFGRVTNVLVLK----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK-   96 (118)
Q Consensus        28 ~PS~vL~V~NLP~~v------te~dL~~Lf~~fG~V~~v~l~~----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr-   96 (118)
                      .++++|||+|||+++      |+++|.++|++||.|.++.+.+    .||+|||+|.+.++|..|+..  +|+..+.|| 
T Consensus        13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~--l~g~~~~g~~   90 (105)
T 2nlw_A           13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN--ADGYKLDKQH   90 (105)
T ss_dssp             SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHH--CSSEECSTTC
T ss_pred             CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHH--hCCcccCCCc
Confidence            557899999999999      8999999999999999999873    379999999999999999864  899999999 


Q ss_pred             eeEEEecccc
Q psy9171          97 NQVSLISGYR  106 (118)
Q Consensus        97 ~v~V~~S~~~  106 (118)
                      +|.|.+|+..
T Consensus        91 ~l~V~~a~~~  100 (105)
T 2nlw_A           91 TFRVNLFTDF  100 (105)
T ss_dssp             EEEEECSCCC
T ss_pred             eEEEEEcchH
Confidence            9999999653

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.71  E-value=1.8e-17  Score=112.94  Aligned_cols=78  Identities=13%  Similarity=0.043  Sum_probs=67.6

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      ..++++|||+|||+++|+++|.++|++||.|.++.++.+      ||+|||+|++.++|..|+..  + +..+.||+|.|
T Consensus        22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~--~-~~~l~g~~l~V   98 (109)
T 2rs2_A           22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ--S-RHELDSKTIDP   98 (109)
T ss_dssp             ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHS--S-CEEETTEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHH--C-CCcCCCEEEEE
Confidence            367889999999999999999999999999999999853      68999999999999999864  3 59999999999


Q ss_pred             Eeccccc
Q psy9171         101 LISGYRN  107 (118)
Q Consensus       101 ~~S~~~~  107 (118)
                      .+|..+.
T Consensus        99 ~~a~~~~  105 (109)
T 2rs2_A           99 KVAFPRR  105 (109)
T ss_dssp             EECCCCC
T ss_pred             EEccCCC
Confidence            9997654

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.71  E-value=1.6e-17  Score=112.83  Aligned_cols=76  Identities=12%  Similarity=0.081  Sum_probs=69.2

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      ++++|||+|||+++|+++|.++|++||.|.++.++.      .+|+|||+|++.++|..|+ .  +|+..+.|++|.|.+
T Consensus        24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~--l~g~~~~g~~l~V~~  100 (114)
T 2cq4_A           24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-G--LTGQRLLGVPIIVQA  100 (114)
T ss_dssp             HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-H--HTTEEETTEEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-H--cCCCEeCCeEEEEEe
Confidence            357999999999999999999999999999999984      2689999999999999998 4  889999999999999


Q ss_pred             ccccc
Q psy9171         103 SGYRN  107 (118)
Q Consensus       103 S~~~~  107 (118)
                      |+.+.
T Consensus       101 a~~~~  105 (114)
T 2cq4_A          101 SQAEK  105 (114)
T ss_dssp             HHHHH
T ss_pred             cCCCc
Confidence            97643

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.71  E-value=1.2e-17  Score=121.48  Aligned_cols=80  Identities=13%  Similarity=0.024  Sum_probs=71.3

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCC--ceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFG--RVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG--~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      .++.|||+|||+++||++|.++|++||  .|.++.++.+      ||+|||+|++.++|..|+..  +|+..+.||+|.|
T Consensus        54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~--lng~~~~Gr~l~V  131 (156)
T 3n9u_C           54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL--LPGKVLNGEKVDV  131 (156)
T ss_dssp             --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH--STTCEETTEECEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH--cCCCEECCeEeEE
Confidence            357899999999999999999999999  9999999853      68999999999999999864  8999999999999


Q ss_pred             EeccccchHH
Q psy9171         101 LISGYRNRQS  110 (118)
Q Consensus       101 ~~S~~~~~~~  110 (118)
                      .+++.++..+
T Consensus       132 ~~a~~~~~~~  141 (156)
T 3n9u_C          132 RPATRQNLSQ  141 (156)
T ss_dssp             EECCHHHHHH
T ss_pred             EEcCCCcchh
Confidence            9998766544

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=99.71  E-value=1.2e-17  Score=116.22  Aligned_cols=77  Identities=14%  Similarity=0.041  Sum_probs=69.2

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCC-ceeEEEEec--cCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFG-RVTNVLVLK--GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG-~V~~v~l~~--~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      ++...|||+|||+++|+++|.++|++|| .|..+.+..  .+|+|||+|++.++|..|+..  +|+..+.||+|.|.+|+
T Consensus        26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~--lng~~l~Gr~i~V~~a~  103 (111)
T 2jvr_A           26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALER--LNNIEFRGSVITVERDD  103 (111)
T ss_dssp             CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHH--TTTEEETTEEEEEEESC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHH--cCCCEECCeEEEEEECC
Confidence            3456899999999999999999999999 899998863  489999999999999999854  89999999999999997


Q ss_pred             cc
Q psy9171         105 YR  106 (118)
Q Consensus       105 ~~  106 (118)
                      ..
T Consensus       104 ~~  105 (111)
T 2jvr_A          104 NP  105 (111)
T ss_dssp             C-
T ss_pred             CC
Confidence            53

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=99.70  E-value=6.1e-18  Score=108.87  Aligned_cols=69  Identities=17%  Similarity=0.182  Sum_probs=62.8

Q ss_pred             CcEEEeCCCCCcc------cHHHHHHhccCCCceeEEEEec----cCceEEEeecchhhhhcccccccccceeeCCe-ee
Q psy9171          30 SRVIHIRNIPNEV------TEAEIIHLGIPFGRVTNVLVLK----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK-NQ   98 (118)
Q Consensus        30 S~vL~V~NLP~~v------te~dL~~Lf~~fG~V~~v~l~~----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr-~v   98 (118)
                      |++|||+|||+++      |+++|.++|++||.|.++.+.+    .||+|||+|++.++|..|+..  +|+..+.|| +|
T Consensus         1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~--lng~~~~g~~~l   78 (81)
T 2krb_A            1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN--ADGYKLDKQHTF   78 (81)
T ss_dssp             CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT--SSSCCCSSSSCC
T ss_pred             CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH--hcCcccCCceeE
Confidence            4689999999999      8899999999999999999874    379999999999999999864  899999999 88


Q ss_pred             EE
Q psy9171          99 VS  100 (118)
Q Consensus        99 ~V  100 (118)
                      .|
T Consensus        79 ~V   80 (81)
T 2krb_A           79 RV   80 (81)
T ss_dssp             CC
T ss_pred             Ee
Confidence            65

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=99.70  E-value=1.9e-17  Score=119.73  Aligned_cols=78  Identities=17%  Similarity=0.132  Sum_probs=71.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++.+|||+|||+++|+++|..+|++||.|.++.++.+      +|+|||+|.+.++|..|+..  +|+..|.|++|.|.
T Consensus        70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V~  147 (165)
T 1rk8_A           70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA--LNGAEIMGQTIQVD  147 (165)
T ss_dssp             C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHH--hCCCEECCEEEEEE
Confidence            56788999999999999999999999999999999864      69999999999999999864  88999999999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      ||..+.
T Consensus       148 ~a~~~~  153 (165)
T 1rk8_A          148 WCFVKG  153 (165)
T ss_dssp             ESEECC
T ss_pred             EecCCC
Confidence            997654

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.70  E-value=5.1e-17  Score=113.19  Aligned_cols=78  Identities=8%  Similarity=-0.047  Sum_probs=71.2

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ   98 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v   98 (118)
                      ....++.+|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|.+.++|..|+..  +|+..+.||+|
T Consensus        82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~i  159 (166)
T 3md3_A           82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS--MQGQDLNGRPL  159 (166)
T ss_dssp             CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH--HTTCEETTEEC
T ss_pred             CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH--hCCCccCCcEE
Confidence            34477889999999999999999999999999999999854      68999999999999999854  88999999999


Q ss_pred             EEEecc
Q psy9171          99 VSLISG  104 (118)
Q Consensus        99 ~V~~S~  104 (118)
                      .|.||+
T Consensus       160 ~v~~a~  165 (166)
T 3md3_A          160 RINWAA  165 (166)
T ss_dssp             EEEESC
T ss_pred             EEEecC
Confidence            999985

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.70  E-value=3.9e-17  Score=112.88  Aligned_cols=81  Identities=11%  Similarity=0.016  Sum_probs=71.3

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCc---eeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGR---VTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~---V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      .++.+|||+|||+++|++||.++|++||.   |..+.++.+     ||+|||+|.+.++|..|+.   +|+..+.||+|.
T Consensus        15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~---~~g~~~~gr~i~   91 (118)
T 2db1_A           15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK---KDRESMGHRYIE   91 (118)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG---GTTEEETTEEEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh---cCCCeECCeEEE
Confidence            45788999999999999999999999999   889998753     7899999999999999985   689999999999


Q ss_pred             EEeccccchHHH
Q psy9171         100 SLISGYRNRQSA  111 (118)
Q Consensus       100 V~~S~~~~~~~~  111 (118)
                      |.+|+.+..+.+
T Consensus        92 V~~a~~~~~~~~  103 (118)
T 2db1_A           92 VFKSHRTEMDWV  103 (118)
T ss_dssp             EEEECHHHHHHH
T ss_pred             EEECCHHHHHHH
Confidence            999966544433

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.70  E-value=9.1e-18  Score=116.14  Aligned_cols=83  Identities=6%  Similarity=0.012  Sum_probs=71.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++.+|||+|||+++|+++|.++|++||.|.++.++.      .+|+|||+|++.++|..|+.   +|+..+.||+|.|.
T Consensus        23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~---~~g~~~~gr~i~V~   99 (124)
T 1wel_A           23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC---RHKQYMGNRFIQVH   99 (124)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT---SCSBCSTTSCBEEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH---hCCCeECCcEEEEE
Confidence            5678999999999999999999999999998743332      27899999999999999985   78999999999999


Q ss_pred             eccccchHHHHH
Q psy9171         102 ISGYRNRQSAAL  113 (118)
Q Consensus       102 ~S~~~~~~~~~~  113 (118)
                      +|+.+...+...
T Consensus       100 ~a~~~~~~~~~~  111 (124)
T 1wel_A          100 PITKKGMLEKID  111 (124)
T ss_dssp             EECHHHHHHHHH
T ss_pred             ECCHHHHHHHHH
Confidence            997765554443

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.70  E-value=3.6e-17  Score=114.08  Aligned_cols=77  Identities=13%  Similarity=0.053  Sum_probs=70.7

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccC------ceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGK------NQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~k------gqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      |+++|||+|||+++|+++|.++|++||.|.++.+++++      |+|||+|.+.++|..|+..  +|+..+.|+++.+.+
T Consensus         1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~--l~~~~~~g~~l~v~~   78 (167)
T 1fxl_A            1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT--LNGLRLQTKTIKVSY   78 (167)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEEEE
T ss_pred             CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHH--cCCCccCCceEEEEe
Confidence            57899999999999999999999999999999998654      8999999999999999854  789999999999999


Q ss_pred             ccccc
Q psy9171         103 SGYRN  107 (118)
Q Consensus       103 S~~~~  107 (118)
                      ++.+.
T Consensus        79 ~~~~~   83 (167)
T 1fxl_A           79 ARPSS   83 (167)
T ss_dssp             CCCCC
T ss_pred             cCCCc
Confidence            98654

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.70  E-value=4.4e-18  Score=111.68  Aligned_cols=73  Identities=16%  Similarity=0.107  Sum_probs=63.8

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCC--ceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFG--RVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG--~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      +|||+|||+++|+++|.++|++||  .|.++.++.+      ||+|||+|++.++|..|+..  +|+..+.||+|.|.++
T Consensus         3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~--l~g~~~~gr~i~V~~~   80 (90)
T 3p5t_L            3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL--LPKRELHGQNPVVTPS   80 (90)
T ss_dssp             -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHH--GGGSCSSSCCCEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHH--cCCCeeCCEEEEEEEC
Confidence            699999999999999999999999  9999998753      68999999999999999864  8999999999999998


Q ss_pred             ccc
Q psy9171         104 GYR  106 (118)
Q Consensus       104 ~~~  106 (118)
                      ...
T Consensus        81 ~~~   83 (90)
T 3p5t_L           81 NKL   83 (90)
T ss_dssp             ---
T ss_pred             CCC
Confidence            754

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=99.70  E-value=2.9e-17  Score=116.68  Aligned_cols=79  Identities=13%  Similarity=0.192  Sum_probs=71.7

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      ...++.+|||+|||+++|+++|.++|++||.|.++.++.+      ||+|||+|.+.++|..|+..  +|+..+.|++|.
T Consensus        66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~  143 (158)
T 2kn4_A           66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA--MDGAVLDGRELR  143 (158)
T ss_dssp             CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHH--STTEESSSSEEE
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH--hCCCEECCeEEE
Confidence            3356889999999999999999999999999999999753      68999999999999999854  889999999999


Q ss_pred             EEecccc
Q psy9171         100 SLISGYR  106 (118)
Q Consensus       100 V~~S~~~  106 (118)
                      |.+|+.+
T Consensus       144 v~~a~~~  150 (158)
T 2kn4_A          144 VQMARYG  150 (158)
T ss_dssp             EEEECCS
T ss_pred             EEECCCC
Confidence            9999865

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.70  E-value=3e-17  Score=111.20  Aligned_cols=78  Identities=18%  Similarity=0.214  Sum_probs=70.2

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceee--------C
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVL--------K   94 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i--------~   94 (118)
                      .++..|||+|||+++|+++|.++|++||.|.++.++.+     +|+|||+|.+.++|..|+..  +|+..+        .
T Consensus        23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~~~~~~~~~  100 (114)
T 1x5o_A           23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH--FNGKFIKTPPGVSAP  100 (114)
T ss_dssp             CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHH--HBTCCCCCCTTSCCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH--hCCCEEcCCccccCC
Confidence            56789999999999999999999999999999999864     68999999999999999864  888888        6


Q ss_pred             CeeeEEEeccccc
Q psy9171          95 GKNQVSLISGYRN  107 (118)
Q Consensus        95 Gr~v~V~~S~~~~  107 (118)
                      |+++.+.||+.++
T Consensus       101 ~~~l~v~~a~p~~  113 (114)
T 1x5o_A          101 TEPLLCKFSGPSS  113 (114)
T ss_dssp             SSCBEEEECCCSC
T ss_pred             CCceeEEccCCCC
Confidence            8889999998543

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=2.7e-17  Score=108.19  Aligned_cols=77  Identities=16%  Similarity=0.051  Sum_probs=68.7

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEE-Eecc--CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVL-VLKG--KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~-l~~~--kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      .++++|||+|||+++|+++|.++|++||.|.+++ ++.+  .+.|||+|.+.++|..|+..  +|+..+.||+|.|.+|+
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~--l~g~~~~g~~l~V~~a~   90 (96)
T 2e44_A           13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDK--LNGFQLENFTLKVAYIP   90 (96)
T ss_dssp             CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHH--HTTCBCSSCBCEEEECC
T ss_pred             CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHH--hCCCEECCcEEEEEEcC
Confidence            3478899999999999999999999999999994 6654  35599999999999999864  89999999999999997


Q ss_pred             cc
Q psy9171         105 YR  106 (118)
Q Consensus       105 ~~  106 (118)
                      .+
T Consensus        91 ~~   92 (96)
T 2e44_A           91 DE   92 (96)
T ss_dssp             CC
T ss_pred             cc
Confidence            65

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=8.2e-17  Score=106.13  Aligned_cols=76  Identities=16%  Similarity=0.170  Sum_probs=66.2

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCc-eEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKN-QLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kg-qAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      .+++.|||+|||+++|+++|.++|++||.|.++.+-+..+ +|||+|.+.++|..|+.   +|+..+.|++|.|.++..+
T Consensus         6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~---l~g~~~~g~~l~V~~a~~~   82 (94)
T 2e5g_A            6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS---QSQHSLGGHRLRVRPREQK   82 (94)
T ss_dssp             TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT---CSCCEETTEECCCBCSCCS
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh---cCCeEECCEEEEEEECCcC
Confidence            5678999999999999999999999999999983322222 99999999999999984   8899999999999988654

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.68  E-value=8.1e-17  Score=108.50  Aligned_cols=76  Identities=11%  Similarity=0.094  Sum_probs=67.8

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeE-EEEec-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN-VLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~-v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++.+|||+|||+++|++||.++|++||.|.+ +.++.     .+|+|||+|++.++|..|+.   .|+..+.||.|.|.
T Consensus        13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~---~~~~~~~gr~i~v~   89 (104)
T 1wg5_A           13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK---KHKERIGHRYIEIF   89 (104)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHT---TTTCCSSSSCCEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHH---hCcchhCCcEEEEE
Confidence            56789999999999999999999999999987 77753     27999999999999999985   37999999999999


Q ss_pred             ecccc
Q psy9171         102 ISGYR  106 (118)
Q Consensus       102 ~S~~~  106 (118)
                      .|+.+
T Consensus        90 ~~~~~   94 (104)
T 1wg5_A           90 KSSRA   94 (104)
T ss_dssp             EECTT
T ss_pred             ECCHH
Confidence            98654

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.68  E-value=8e-18  Score=117.60  Aligned_cols=78  Identities=18%  Similarity=0.204  Sum_probs=69.9

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeE--EEEecc------CceEEEeecchhhhhcccccccccce----eeCC
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN--VLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVL----VLKG   95 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~--v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~----~i~G   95 (118)
                      .++++|||+|||+++||++|.++|++||.|..  ++++.+      ||+|||+|++. +|..|+..  +|+.    .+.|
T Consensus        21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~--l~g~~~~~~~~g   97 (131)
T 2m2b_A           21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQI--LQALHPPLTIDG   97 (131)
T ss_dssp             CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHH--HTTCCCSCCGGG
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHH--hcCCCCCccCCC
Confidence            67899999999999999999999999999965  888753      69999999999 99999864  7888    9999


Q ss_pred             eeeEEEeccccch
Q psy9171          96 KNQVSLISGYRNR  108 (118)
Q Consensus        96 r~v~V~~S~~~~~  108 (118)
                      |+|.|.+++.+.+
T Consensus        98 r~l~V~~a~~~~~  110 (131)
T 2m2b_A           98 KTINVEFAKGSKR  110 (131)
T ss_dssp             CCCCCEECCCSCC
T ss_pred             EEEEEEECCCCCC
Confidence            9999999987644

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.68  E-value=1.9e-17  Score=104.50  Aligned_cols=69  Identities=13%  Similarity=0.106  Sum_probs=63.7

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      +|||+|||+++|+++|.++|++||.|.++.+..+      +|+|||+|.+.++|..|+..  +| ..+.|+++.+.+|
T Consensus         2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~--~~-~~~~g~~l~v~~a   76 (77)
T 1uaw_A            2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ--SR-HELDSKTIDPKVA   76 (77)
T ss_dssp             CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHT--TT-CCCSSCCCEEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHh--CC-CccCCEEEEEEec
Confidence            6999999999999999999999999999999853      68999999999999999864  66 9999999999886

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.68  E-value=7.3e-18  Score=109.76  Aligned_cols=75  Identities=17%  Similarity=0.140  Sum_probs=65.1

Q ss_pred             cEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      ++|||+|||+++|+++|.++|++||.|.++.+..+      +|+|||+|++.+ |..|+..  +|+..+.|++|.|.+|.
T Consensus         2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~--l~g~~~~g~~l~V~~a~   78 (90)
T 2ki2_A            2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAK--LDNTDFMGRTIRVTEAN   78 (90)
T ss_dssp             EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHT--SCSSCCSSSSCSEEEC-
T ss_pred             cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHH--hCCCEECCeEEEEEEcC
Confidence            47999999999999999999999999999999853      789999999999 9999854  88999999999999998


Q ss_pred             ccch
Q psy9171         105 YRNR  108 (118)
Q Consensus       105 ~~~~  108 (118)
                      ....
T Consensus        79 ~~~~   82 (90)
T 2ki2_A           79 PKKS   82 (90)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            7544

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.68  E-value=8.5e-17  Score=122.70  Aligned_cols=77  Identities=13%  Similarity=0.207  Sum_probs=72.0

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccC-ceEEEeecchhhhhcccccccccceeeC-CeeeEEEec
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGK-NQLLLHLEAEIIHLGIPFGRVTNVLVLK-GKNQVSLIS  103 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~k-gqAFVEm~~~e~A~~ai~~~~~n~~~i~-Gr~v~V~~S  103 (118)
                      ..+|+++|||+|||+++|+++|.++|++||.|.++.+++++ |+|||+|.+.++|..|+..  +|+..+. |++|.|.||
T Consensus       203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~~g~~l~v~~a  280 (282)
T 3pgw_A          203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDA--LQGFKITQNNAMKISFA  280 (282)
T ss_pred             CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHH--cCCcEeCCCCEEEEEEe
Confidence            44688999999999999999999999999999999999875 9999999999999999865  8999999 999999999


Q ss_pred             c
Q psy9171         104 G  104 (118)
Q Consensus       104 ~  104 (118)
                      +
T Consensus       281 k  281 (282)
T 3pgw_A          281 K  281 (282)
T ss_pred             c
Confidence            6

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.68  E-value=1.1e-16  Score=112.90  Aligned_cols=77  Identities=16%  Similarity=0.171  Sum_probs=70.1

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      ..+++++|||+|||+++|+++|.++|++||.|.++.+..+      +|+|||+|++.++|..|+..  +|+..+.||+|.
T Consensus        90 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~  167 (172)
T 2g4b_A           90 PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG--LNGMQLGDKKLL  167 (172)
T ss_dssp             CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH--HTTCEETTEECE
T ss_pred             CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH--cCCCEECCeEEE
Confidence            3356789999999999999999999999999999999865      68999999999999999854  889999999999


Q ss_pred             EEecc
Q psy9171         100 SLISG  104 (118)
Q Consensus       100 V~~S~  104 (118)
                      |.+|.
T Consensus       168 V~~As  172 (172)
T 2g4b_A          168 VQRAS  172 (172)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            99983

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=99.68  E-value=4.2e-17  Score=108.52  Aligned_cols=75  Identities=15%  Similarity=0.119  Sum_probs=68.6

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.++.+     ||+|||+|++.++|..|+.    |+..+.|+++.|.+
T Consensus         7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~----~~~~~~g~~l~v~~   82 (102)
T 2xs2_A            7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE----SQINFHGKKLKLGP   82 (102)
T ss_dssp             EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT----CCCEETTEECEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh----CCCeECCEEEEEEE
Confidence            56789999999999999999999999999999999863     6999999999999999985    78999999999999


Q ss_pred             cccc
Q psy9171         103 SGYR  106 (118)
Q Consensus       103 S~~~  106 (118)
                      +..+
T Consensus        83 a~~~   86 (102)
T 2xs2_A           83 AIRK   86 (102)
T ss_dssp             EEEC
T ss_pred             CCcC
Confidence            8643

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.67  E-value=7e-17  Score=113.23  Aligned_cols=77  Identities=10%  Similarity=0.141  Sum_probs=70.3

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      |+++|||+|||+++|+++|.++|++||.|.++.++++      +|+|||+|.+.++|..|+..  +|+..+.|+++.+.+
T Consensus         2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~--l~~~~~~g~~l~v~~   79 (168)
T 1b7f_A            2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV--LNGITVRNKRLKVSY   79 (168)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH--HTTCEETTEECEEEE
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHh--cCCCEeCCcEEEEEe
Confidence            7889999999999999999999999999999999853      48999999999999999854  789999999999999


Q ss_pred             ccccc
Q psy9171         103 SGYRN  107 (118)
Q Consensus       103 S~~~~  107 (118)
                      ++.+.
T Consensus        80 ~~~~~   84 (168)
T 1b7f_A           80 ARPGG   84 (168)
T ss_dssp             CCCCS
T ss_pred             cCCCc
Confidence            97543

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.67  E-value=3e-17  Score=103.60  Aligned_cols=69  Identities=14%  Similarity=0.151  Sum_probs=63.4

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      .|||+|||+++|+++|.++|++||.|.++.+..+      +|+|||+|++.++|..|+.   +|+..+.|+++.|.+|
T Consensus         1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~---~~~~~~~g~~l~v~~A   75 (75)
T 2mss_A            1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE---IHFHEINNKMVECKKA   75 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS---SSCCCSSSCCCEEECC
T ss_pred             CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH---CCCCEECCEEEEEEeC
Confidence            3899999999999999999999999999998753      5899999999999999974   7899999999999876

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.67  E-value=1e-16  Score=108.54  Aligned_cols=75  Identities=12%  Similarity=0.197  Sum_probs=67.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      .++.+|||+|||+++||+||.++|++||.+ ++.++.+     ||+|||||++.++|..|+.   +|+..+.||.|.|..
T Consensus        13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~---~~~~~~~gr~i~V~~   88 (102)
T 1wez_A           13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA---KDKANMQHRYVELFL   88 (102)
T ss_dssp             SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT---TSSCCSSSSCCEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH---hCCCeECCcEEEEEE
Confidence            567899999999999999999999999955 8888753     6899999999999999983   589999999999998


Q ss_pred             cccc
Q psy9171         103 SGYR  106 (118)
Q Consensus       103 S~~~  106 (118)
                      |+..
T Consensus        89 ~~~~   92 (102)
T 1wez_A           89 NSTA   92 (102)
T ss_dssp             ECCC
T ss_pred             CCCC
Confidence            8654

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.67  E-value=1e-16  Score=119.20  Aligned_cols=81  Identities=17%  Similarity=0.101  Sum_probs=71.2

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      ..|+++|||+|||+++||++|.++|++||.|.++.++++      +|+|||+|.+.++|..|+..  +|+..+.||.+.+
T Consensus        12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~--~~~~~~~g~~i~~   89 (213)
T 4f02_A           12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT--MNFDVIKGKPVRI   89 (213)
T ss_dssp             ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHH--hhhhhcCCccccc
Confidence            368899999999999999999999999999999999853      68999999999999999854  8899999999999


Q ss_pred             EeccccchH
Q psy9171         101 LISGYRNRQ  109 (118)
Q Consensus       101 ~~S~~~~~~  109 (118)
                      .++......
T Consensus        90 ~~~~~~~~~   98 (213)
T 4f02_A           90 MWSQRDPSL   98 (213)
T ss_dssp             EECCCCTHH
T ss_pred             ccccccccc
Confidence            999775543

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.67  E-value=2.8e-17  Score=111.28  Aligned_cols=83  Identities=8%  Similarity=0.059  Sum_probs=72.1

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCc---eeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCee
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGR---VTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN   97 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~---V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~   97 (118)
                      ...++.+|||+|||+++|++||.++|++||.   |..+.++.+     ||+|||+|++.++|..|+.   +|+..+.||.
T Consensus         7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~---~~~~~~~gr~   83 (107)
T 2lmi_A            7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE---KHRMYMGQRY   83 (107)
T ss_dssp             CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT---TTTCCSSSSC
T ss_pred             CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH---hCcceeCCeE
Confidence            3366789999999999999999999999998   889998753     6899999999999999975   6899999999


Q ss_pred             eEEEeccccchHHH
Q psy9171          98 QVSLISGYRNRQSA  111 (118)
Q Consensus        98 v~V~~S~~~~~~~~  111 (118)
                      |.|.+|+.+..+.+
T Consensus        84 i~V~~a~~~~~~~~   97 (107)
T 2lmi_A           84 VEVYEINNEDVDAL   97 (107)
T ss_dssp             CCCEECCHHHHHHH
T ss_pred             EEEEECCHHHHHHH
Confidence            99999976544433

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.67  E-value=5.8e-17  Score=116.18  Aligned_cols=81  Identities=9%  Similarity=-0.015  Sum_probs=71.3

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCc---eeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGR---VTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~---V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      .++.+|||+|||+++||+||.++|++||.   |.++.++.+     ||+|||+|++.++|..|+.   +|+..+.||+|.
T Consensus        42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~---~~g~~l~gr~i~  118 (136)
T 2hgl_A           42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK---KDRESMGHRYIE  118 (136)
T ss_dssp             CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT---TTEEESSSSEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh---cCCCEECCEEEE
Confidence            45788999999999999999999999999   888988753     6899999999999999974   789999999999


Q ss_pred             EEeccccchHHH
Q psy9171         100 SLISGYRNRQSA  111 (118)
Q Consensus       100 V~~S~~~~~~~~  111 (118)
                      |..|+.+..+.+
T Consensus       119 V~~a~~~e~~~~  130 (136)
T 2hgl_A          119 VFKSHRTEMDWV  130 (136)
T ss_dssp             EEECCHHHHHHH
T ss_pred             EEECChHHHHHH
Confidence            999976544443

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=99.67  E-value=2.8e-17  Score=116.27  Aligned_cols=78  Identities=12%  Similarity=0.175  Sum_probs=70.9

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.++.+      ||+|||+|++.++|..|+..  +|+..+.|++|.|.
T Consensus        45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~--l~g~~i~g~~l~V~  122 (135)
T 2lea_A           45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA--MDGAVLDGRELRVQ  122 (135)
T ss_dssp             GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTT--TTTCCSSSSCCEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH--cCCCEECCEEEEEE
Confidence            45778999999999999999999999999999999753      67999999999999999864  88999999999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      +|+.+.
T Consensus       123 ~a~~~~  128 (135)
T 2lea_A          123 MARYGR  128 (135)
T ss_dssp             ECCCCC
T ss_pred             ECCCCC
Confidence            998654

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.67  E-value=1.5e-17  Score=110.50  Aligned_cols=77  Identities=12%  Similarity=-0.071  Sum_probs=67.9

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      ..+++.|||+|||+++|+++|.++|++||.|.. .++.      .||+|||+|++.++|..|+.   +|+..+.|++|.|
T Consensus        14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~---l~g~~~~g~~l~V   89 (101)
T 1fj7_A           14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE---LTGLKVFGNEIKL   89 (101)
T ss_dssp             CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH---GGGCCBTTBCCEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh---cCCcEECCcEEEE
Confidence            357889999999999999999999999998877 3332      37999999999999999983   8899999999999


Q ss_pred             Eeccccc
Q psy9171         101 LISGYRN  107 (118)
Q Consensus       101 ~~S~~~~  107 (118)
                      .+|+.+.
T Consensus        90 ~~a~~~~   96 (101)
T 1fj7_A           90 EKPKGRD   96 (101)
T ss_dssp             ECCSCCC
T ss_pred             EEcCCCC
Confidence            9998754

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=99.49  E-value=4.6e-18  Score=115.99  Aligned_cols=79  Identities=9%  Similarity=0.043  Sum_probs=71.2

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeE--------EEEecc------CceEEEeecchhhhhcccccccccceee
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN--------VLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVL   93 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~--------v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i   93 (118)
                      +|+++|||+|||+++|+++|.++|++||.|..        +.++.+      +|+|||+|.+.++|..|+..  +|+..+
T Consensus         5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~--l~g~~~   82 (116)
T 2lcw_A            5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW--FDGKEF   82 (116)
Confidence            67889999999999999999999999999998        777643      68999999999999999864  889999


Q ss_pred             CCeeeEEEeccccch
Q psy9171          94 KGKNQVSLISGYRNR  108 (118)
Q Consensus        94 ~Gr~v~V~~S~~~~~  108 (118)
                      .|++|.|.+|+.+..
T Consensus        83 ~g~~l~V~~a~~~~~   97 (116)
T 2lcw_A           83 SGNPIKVSFATRRAD   97 (116)
Confidence            999999999976543

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.67  E-value=2e-17  Score=104.18  Aligned_cols=69  Identities=12%  Similarity=0.043  Sum_probs=63.0

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      +|||+|||+++|+++|.++|++||.|.++.+..+      +|+|||+|++.++|..|+.   .++..+.|+++.|.+|
T Consensus         1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~---~~~~~~~g~~l~v~~a   75 (75)
T 1iqt_A            1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME---KKYHNVGLSKCEIKVA   75 (75)
T ss_dssp             CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT---TSSCCBTTBCCCEEEC
T ss_pred             CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH---hCCCeECCEEEEEEEC
Confidence            4899999999999999999999999999998753      7899999999999999985   4788999999999875

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.66  E-value=4e-17  Score=122.60  Aligned_cols=87  Identities=23%  Similarity=0.188  Sum_probs=73.1

Q ss_pred             eecchheeeeeccC---CCCCCCCCCcEEEeCCCCCcccHHHHHHhccCCCce--eEEEEecc----CceEEEeecchhh
Q psy9171           8 VKYTLVMVVQAKLD---RQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRV--TNVLVLKG----KNQLLLHLEAEII   78 (118)
Q Consensus         8 ~~~~~~~~~~~~~~---~~~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V--~~v~l~~~----kgqAFVEm~~~e~   78 (118)
                      .+|+.++.++++.+   ......+|+++|||+|||+++|+++|.++|++||.|  .+++++++    +|+|||||++.++
T Consensus        98 ~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~  177 (205)
T 3tyt_A           98 KDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSD  177 (205)
T ss_dssp             EECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHH
T ss_pred             cccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHH
Confidence            46666666666542   112345899999999999999999999999999999  89999864    5899999999999


Q ss_pred             hhcccccccccceeeCCe
Q psy9171          79 HLGIPFGRVTNVLVLKGK   96 (118)
Q Consensus        79 A~~ai~~~~~n~~~i~Gr   96 (118)
                      |..|+..  +|+..+.|+
T Consensus       178 A~~Ai~~--lng~~~~g~  193 (205)
T 3tyt_A          178 ALETLGF--LNHYQMKNP  193 (205)
T ss_dssp             HHHHHHH--HTTCEECCS
T ss_pred             HHHHHHH--hCCCCccCC
Confidence            9999865  999999998

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.66  E-value=1.4e-16  Score=114.59  Aligned_cols=79  Identities=15%  Similarity=0.175  Sum_probs=72.7

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.+..+      +|+|||+|.+.++|..|+..  +|+..+.|++|.|.
T Consensus       112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~  189 (198)
T 2yh0_A          112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG--LNGMQLGDKKLLVQ  189 (198)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHH--HTTCEETTEECEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHH--cCCCEECCEEEEEE
Confidence            57899999999999999999999999999999999864      78999999999999999864  88999999999999


Q ss_pred             eccccch
Q psy9171         102 ISGYRNR  108 (118)
Q Consensus       102 ~S~~~~~  108 (118)
                      +|+.+..
T Consensus       190 ~a~~~~~  196 (198)
T 2yh0_A          190 RASVGAK  196 (198)
T ss_dssp             ESCCCCC
T ss_pred             ECCCCCC
Confidence            9987654

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.66  E-value=1.4e-16  Score=116.02  Aligned_cols=78  Identities=12%  Similarity=0.123  Sum_probs=71.6

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|.+.++|..|+..  +|+..+.||+|.|.
T Consensus       123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~--l~g~~~~g~~i~V~  200 (216)
T 2qfj_A          123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS--MNLFDLGGQYLRVG  200 (216)
T ss_dssp             TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--HTTCBCSSSBCEEE
T ss_pred             CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH--ccCCEeCCcEEEEE
Confidence            56789999999999999999999999999999999865      78999999999999999854  88999999999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      ||....
T Consensus       201 ~a~~~~  206 (216)
T 2qfj_A          201 KAVTPP  206 (216)
T ss_dssp             ECSSCS
T ss_pred             EecCCC
Confidence            998753

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.65  E-value=1.9e-16  Score=121.10  Aligned_cols=77  Identities=14%  Similarity=0.195  Sum_probs=72.4

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.+.+.||+|||+|.+.++|..|+..  +|+..+.|+++.|.++...
T Consensus        20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~--l~g~~i~g~~l~v~~a~~~   96 (261)
T 3sde_A           20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAE--LDGTILKSRPLRIRFATHG   96 (261)
T ss_dssp             CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHH--HTTCEETTEECEEEECCCS
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHH--cCCcEECCceeEeeecccC
Confidence            6788999999999999999999999999999999999999999999999999999854  8899999999999999764

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.65  E-value=2e-16  Score=113.57  Aligned_cols=77  Identities=12%  Similarity=0.066  Sum_probs=69.1

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|.+.++|..|+.   .++..+.|+++.+.
T Consensus        11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~---~~~~~~~g~~l~v~   87 (196)
T 1l3k_A           11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN---ARPHKVDGRVVEPK   87 (196)
T ss_dssp             GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH---TCSCEETTEECEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh---cCCCEECCEEeeee
Confidence            67899999999999999999999999999999999853      6799999999999999984   47899999999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      ++..+.
T Consensus        88 ~~~~~~   93 (196)
T 1l3k_A           88 RAVSRE   93 (196)
T ss_dssp             ECCC--
T ss_pred             cccCcc
Confidence            987653

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=2.9e-16  Score=104.20  Aligned_cols=76  Identities=11%  Similarity=0.050  Sum_probs=66.0

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      .+|+++|||+|||+++|+++|.++|++|+.   +.++.+      +|+|||+|++.++|..|+..  +|+..+.|++|.|
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~V   86 (102)
T 2fc8_A           12 SQPSKTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKVTL   86 (102)
T ss_dssp             SCCCSSEEEECCCTTCCHHHHHHTSTTCSE---EEEEECSSSCSEEEEEEEECSSHHHHHHHHHH--HTTCEETTEECEE
T ss_pred             CCCCCEEEEeCCCCccCHHHHHHHhcCCeE---EEEEecCCCCCcCcEEEEEECCHHHHHHHHHH--hCCCeECCeEEEE
Confidence            367899999999999999999999998864   444432      58999999999999999854  8899999999999


Q ss_pred             Eeccccc
Q psy9171         101 LISGYRN  107 (118)
Q Consensus       101 ~~S~~~~  107 (118)
                      .+|+.+.
T Consensus        87 ~~a~~~~   93 (102)
T 2fc8_A           87 DWAKPKG   93 (102)
T ss_dssp             EECCCCC
T ss_pred             EEecCCC
Confidence            9998754

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.65  E-value=2.6e-16  Score=120.02  Aligned_cols=79  Identities=14%  Similarity=0.173  Sum_probs=72.3

Q ss_pred             CCCCcEEEeCCCCCcccHHHHH----HhccCCCceeEEEEec---cCceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEII----HLGIPFGRVTNVLVLK---GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~----~Lf~~fG~V~~v~l~~---~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      ..|+++|||+|||+++|+++|.    ++|++||.|.++.+.+   .||+|||+|.+.++|..|+..  +|+..+.||+|.
T Consensus         6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~   83 (282)
T 3pgw_A            6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS--MQGFPFYDKPMR   83 (282)
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHH--hcCCeeCCcEEE
Confidence            4889999999999999999966    8999999999999875   479999999999999999854  889999999999


Q ss_pred             EEeccccc
Q psy9171         100 SLISGYRN  107 (118)
Q Consensus       100 V~~S~~~~  107 (118)
                      |.|++.++
T Consensus        84 v~~a~~~~   91 (282)
T 3pgw_A           84 IQYAKTDS   91 (282)
T ss_pred             EEEeccCc
Confidence            99997755

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.65  E-value=9.2e-17  Score=120.59  Aligned_cols=80  Identities=20%  Similarity=0.095  Sum_probs=73.5

Q ss_pred             CCCCCCcEEEeCCCCC-cccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          25 SDFKPSRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~-~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      ...+|+++|||+|||+ ++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+..  +|+..+.|++|.|.+
T Consensus        29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~--l~g~~~~g~~l~v~~  106 (229)
T 2adc_A           29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSH--LNGHKLHGKPIRITL  106 (229)
T ss_dssp             GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHH--HTTCBCSSSBCEEEC
T ss_pred             CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHH--hCCCeECCeEEEEEE
Confidence            3347899999999999 9999999999999999999999976 59999999999999999854  889999999999999


Q ss_pred             cccc
Q psy9171         103 SGYR  106 (118)
Q Consensus       103 S~~~  106 (118)
                      ++.+
T Consensus       107 a~~~  110 (229)
T 2adc_A          107 SKHQ  110 (229)
T ss_dssp             CSCC
T ss_pred             ecCc
Confidence            9865

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.64  E-value=2.6e-16  Score=117.01  Aligned_cols=77  Identities=16%  Similarity=0.127  Sum_probs=70.5

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc----CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      ++..|||+|||+++|+++|.++|++||.|..+.++.+    ||+|||+|.+.++|..|+..  +|+..|.||+|.|.+|+
T Consensus       102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~--lng~~~~g~~i~V~~a~  179 (213)
T 4f02_A          102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK--MNGMLLNDRKVFVGRFK  179 (213)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEEEECC
T ss_pred             ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHH--hCCCEECCEEEEEEEcC
Confidence            4668999999999999999999999999999999853    78999999999999999864  89999999999999998


Q ss_pred             ccc
Q psy9171         105 YRN  107 (118)
Q Consensus       105 ~~~  107 (118)
                      .+.
T Consensus       180 ~~~  182 (213)
T 4f02_A          180 SRK  182 (213)
T ss_dssp             CHH
T ss_pred             CCc
Confidence            654

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=99.64  E-value=8.9e-17  Score=110.41  Aligned_cols=73  Identities=7%  Similarity=-0.031  Sum_probs=65.8

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCee-----eEEEecc
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN-----QVSLISG  104 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~-----v~V~~S~  104 (118)
                      +..|||+|||+++|++||.++|++||.|.++.++.+ |+|||+|++.++|..|+..  +|+..+.|++     +.+..++
T Consensus        16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~--l~g~~~~gr~~~~~~i~v~~~~   92 (115)
T 3beg_B           16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRK--LDNTKFRSHEGETAYIRVKVDG   92 (115)
T ss_dssp             -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHH--HTTCBCCCTTSCCCBCEEEECC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHH--hCCCEECCcEeeeEEEEeccCC
Confidence            467999999999999999999999999999999877 9999999999999999864  8999999999     7777765


Q ss_pred             c
Q psy9171         105 Y  105 (118)
Q Consensus       105 ~  105 (118)
                      .
T Consensus        93 ~   93 (115)
T 3beg_B           93 P   93 (115)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.64  E-value=2.4e-16  Score=109.71  Aligned_cols=75  Identities=12%  Similarity=-0.019  Sum_probs=68.4

Q ss_pred             cEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      |+|||+|||+++|+++|.++|++||.|.++.++.+     +|+|||+|.+.++|..|+..  +|+..+.|+++.+.++..
T Consensus         1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~~~~~~g~~i~v~~~~~   78 (166)
T 3md3_A            1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT--LNGKQIENNIVKINWAFQ   78 (166)
T ss_dssp             CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEEEECCC
T ss_pred             CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHH--cCCCccCCCeeEEEEcCC
Confidence            68999999999999999999999999999999853     58999999999999999854  889999999999999965


Q ss_pred             cc
Q psy9171         106 RN  107 (118)
Q Consensus       106 ~~  107 (118)
                      +.
T Consensus        79 ~~   80 (166)
T 3md3_A           79 SQ   80 (166)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.63  E-value=5.6e-16  Score=111.25  Aligned_cols=76  Identities=9%  Similarity=0.117  Sum_probs=67.6

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|++.++|.+|+.   .++..+.|++|.|.
T Consensus       102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~---~~~~~~~G~~i~v~  178 (196)
T 1l3k_A          102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI---QKYHTVNGHNCEVR  178 (196)
T ss_dssp             -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH---CSCCEETTEECEEE
T ss_pred             CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH---hCCcEECCEEEEEE
Confidence            56789999999999999999999999999999999853      6899999999999999985   36899999999999


Q ss_pred             ecccc
Q psy9171         102 ISGYR  106 (118)
Q Consensus       102 ~S~~~  106 (118)
                      +|..+
T Consensus       179 ~a~~k  183 (196)
T 1l3k_A          179 KALSK  183 (196)
T ss_dssp             ECC--
T ss_pred             ecCCh
Confidence            99764

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=2.2e-16  Score=111.52  Aligned_cols=80  Identities=11%  Similarity=0.086  Sum_probs=68.4

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCce----eEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRV----TNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ   98 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V----~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v   98 (118)
                      .++.+|||+|||+++||+||.++|++||.|    ..+.++.+     ||+|||+|++.++|..|+.   .|+..+.||.|
T Consensus        21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~---~~~~~l~gR~i   97 (123)
T 2dha_A           21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALR---KHKDLLGKRYI   97 (123)
T ss_dssp             CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHT---TTTEESSSCEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH---hCCCeeCCeEE
Confidence            456799999999999999999999999986    57888742     7999999999999999985   47899999999


Q ss_pred             EEEeccccchHH
Q psy9171          99 VSLISGYRNRQS  110 (118)
Q Consensus        99 ~V~~S~~~~~~~  110 (118)
                      .|..|+.+..+.
T Consensus        98 ~V~~a~~~e~~~  109 (123)
T 2dha_A           98 ELFRSTAAEVQQ  109 (123)
T ss_dssp             CCEEECHHHHHH
T ss_pred             EEEECCHHHHHH
Confidence            999996544333

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=99.63  E-value=3.3e-16  Score=115.71  Aligned_cols=79  Identities=16%  Similarity=0.128  Sum_probs=71.9

Q ss_pred             CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      ...++.+|||+|||+++|+++|.++|++||.|.++.+..+     +|+|||+|++.++|..|+..  +|+..+.|++|.|
T Consensus        84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~--lng~~l~Gr~l~V  161 (177)
T 2f3j_A           84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ--YKGVPLDGRPMDI  161 (177)
T ss_dssp             SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHH--STTCBCSSSBCEE
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHH--hCCCEECCEEEEE
Confidence            4467889999999999999999999999999999999753     69999999999999999864  8899999999999


Q ss_pred             Eecccc
Q psy9171         101 LISGYR  106 (118)
Q Consensus       101 ~~S~~~  106 (118)
                      .+|...
T Consensus       162 ~~a~~~  167 (177)
T 2f3j_A          162 QLVASQ  167 (177)
T ss_dssp             EEESSG
T ss_pred             EEecCC
Confidence            999764

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.63  E-value=6.1e-16  Score=109.00  Aligned_cols=76  Identities=17%  Similarity=0.150  Sum_probs=70.6

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCC----C-------ceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPF----G-------RVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK   96 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~f----G-------~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr   96 (118)
                      .++++|||+|||+++|+++|.++|++|    |       .|.++.+.+.||+|||+|.+.++|..|+ .  +|+..+.|+
T Consensus         2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~--~~~~~~~g~   78 (172)
T 2g4b_A            2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-A--FDGIIFQGQ   78 (172)
T ss_dssp             CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-G--GTTCEETTE
T ss_pred             CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-H--hCCcEecCc
Confidence            478899999999999999999999999    7       8889999889999999999999999998 3  889999999


Q ss_pred             eeEEEecccc
Q psy9171          97 NQVSLISGYR  106 (118)
Q Consensus        97 ~v~V~~S~~~  106 (118)
                      ++.+.+++..
T Consensus        79 ~i~v~~~~~~   88 (172)
T 2g4b_A           79 SLKIRRPHDY   88 (172)
T ss_dssp             ECEEECCSSC
T ss_pred             eeeecCCccc
Confidence            9999998764

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.63  E-value=7e-16  Score=109.49  Aligned_cols=77  Identities=14%  Similarity=0.110  Sum_probs=68.5

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEe--ccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL--KGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~--~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      .++++|||+|||+++|+++|.++|++||.|..+ -.  ..+|+|||+|.+.++|..|+..  +|+..+.||+|.|.||+.
T Consensus        97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~i~v~~a~~  173 (175)
T 1fje_B           97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEE--KQGAEIDGRSVSLYYTGE  173 (175)
T ss_dssp             GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHH--HTEEEETTEEEEEEECSS
T ss_pred             ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHH--hCCCEECCeEEEEEecCC
Confidence            578899999999999999999999999998877 22  1379999999999999999864  889999999999999976


Q ss_pred             cc
Q psy9171         106 RN  107 (118)
Q Consensus       106 ~~  107 (118)
                      ++
T Consensus       174 k~  175 (175)
T 1fje_B          174 KG  175 (175)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.63  E-value=3.9e-16  Score=109.79  Aligned_cols=74  Identities=15%  Similarity=0.188  Sum_probs=67.1

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeC---CeeeE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLK---GKNQV   99 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~---Gr~v~   99 (118)
                      .++++|||+|||+++|+++|.++|++||.|..+.+..+     +|+|||+|++.++|..|+..  +|+..+.   ||+|.
T Consensus        93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~g~~~~~g~~~~l~  170 (175)
T 3nmr_A           93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA--MHQAQTMEGCSSPMV  170 (175)
T ss_dssp             GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH--HTTSCCCTTCSSCCE
T ss_pred             CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH--hcCCcccCCCCCCeE
Confidence            57889999999999999999999999999999999865     78999999999999999854  7877666   49999


Q ss_pred             EEec
Q psy9171         100 SLIS  103 (118)
Q Consensus       100 V~~S  103 (118)
                      |.||
T Consensus       171 V~~a  174 (175)
T 3nmr_A          171 VKFA  174 (175)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9997

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.63  E-value=7.3e-16  Score=105.73  Aligned_cols=76  Identities=17%  Similarity=0.214  Sum_probs=67.8

Q ss_pred             CCCcEEEeCCCCC-----cccHHHHHHhccCCCceeEEEEecc-------CceEEEeecchhhhhcccccccccceeeCC
Q psy9171          28 KPSRVIHIRNIPN-----EVTEAEIIHLGIPFGRVTNVLVLKG-------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKG   95 (118)
Q Consensus        28 ~PS~vL~V~NLP~-----~vte~dL~~Lf~~fG~V~~v~l~~~-------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G   95 (118)
                      .||++|+|+||..     +-+++||.++|++||.|.++.+..+       +|+|||+|++.++|..|+..  +|+..+.|
T Consensus         6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~--lnG~~~~G   83 (105)
T 2pe8_A            6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVD--LNGRYFGG   83 (105)
T ss_dssp             SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHH--HTTCEETT
T ss_pred             CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHH--HCCCEECC
Confidence            7999999999973     3479999999999999999999742       79999999999999999865  99999999


Q ss_pred             eeeEEEeccc
Q psy9171          96 KNQVSLISGY  105 (118)
Q Consensus        96 r~v~V~~S~~  105 (118)
                      |+|.+.|+..
T Consensus        84 r~i~v~~a~~   93 (105)
T 2pe8_A           84 RVVKACFYNL   93 (105)
T ss_dssp             EECEEEECCH
T ss_pred             cEEEEEEcCH
Confidence            9999999964

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.62  E-value=3.5e-16  Score=119.69  Aligned_cols=78  Identities=14%  Similarity=0.066  Sum_probs=69.3

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCC--ceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFG--RVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG--~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      ....|||+|||+++||++|.++|++||  .|.++.++.+      ||+|||+|++.++|..|+..  +|+..|.||+|.|
T Consensus        67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~--lng~~~~Gr~l~V  144 (229)
T 3q2s_C           67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL--LPKRELHGQNPVV  144 (229)
T ss_dssp             --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTT--STTSCBTTBCCEE
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH--cCCCeECCEEeEE
Confidence            345699999999999999999999999  9999999854      68999999999999999864  8899999999999


Q ss_pred             Eeccccch
Q psy9171         101 LISGYRNR  108 (118)
Q Consensus       101 ~~S~~~~~  108 (118)
                      .+++.++.
T Consensus       145 ~~a~~~~~  152 (229)
T 3q2s_C          145 TPVNKQFL  152 (229)
T ss_dssp             EECCHHHH
T ss_pred             EECCCCcc
Confidence            99976543

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.62  E-value=9e-16  Score=107.51  Aligned_cols=74  Identities=9%  Similarity=0.162  Sum_probs=68.2

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCC--eeeE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKG--KNQV   99 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G--r~v~   99 (118)
                      .++++|||+|||+++|+++|.++|++||.|..+.+..+      +|+|||+|.+.++|..|+..  +|+..+.|  ++|.
T Consensus        87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~~~l~  164 (168)
T 1b7f_A           87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA--LNNVIPEGGSQPLS  164 (168)
T ss_dssp             TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--HTTCCCTTCSSCCE
T ss_pred             CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH--hcCCEecCCCeEEE
Confidence            67889999999999999999999999999999999864      48999999999999999854  88999988  9999


Q ss_pred             EEec
Q psy9171         100 SLIS  103 (118)
Q Consensus       100 V~~S  103 (118)
                      |.||
T Consensus       165 V~~A  168 (168)
T 1b7f_A          165 VRLA  168 (168)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9986

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=8.2e-16  Score=106.26  Aligned_cols=73  Identities=14%  Similarity=0.119  Sum_probs=66.1

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      +.+|||+|||+++||+||.++|++| .|.++.++.+     ||+|||+|++.++|..|+   .+|+..+.||.|.|..++
T Consensus        16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al---~~~~~~~~gr~i~V~~a~   91 (109)
T 2dnn_A           16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL---KRNRMLMIQRYVEVSPAT   91 (109)
T ss_dssp             HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH---HTTTEEETTEEEEEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH---hcCCCeECCeEEEEEECC
Confidence            4689999999999999999999999 8999999853     799999999999999997   278999999999998886


Q ss_pred             cc
Q psy9171         105 YR  106 (118)
Q Consensus       105 ~~  106 (118)
                      .+
T Consensus        92 ~~   93 (109)
T 2dnn_A           92 ER   93 (109)
T ss_dssp             HH
T ss_pred             cc
Confidence            53

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=99.61  E-value=5.4e-16  Score=126.59  Aligned_cols=76  Identities=12%  Similarity=0.036  Sum_probs=68.6

Q ss_pred             CCCCcEEEeCC--CCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceee---CCe--eeE
Q psy9171          27 FKPSRVIHIRN--IPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVL---KGK--NQV   99 (118)
Q Consensus        27 ~~PS~vL~V~N--LP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i---~Gr--~v~   99 (118)
                      .+|+++|||+|  |++++||++|.++|++||.|.++.+.++||+|||||++.++|..|+..  +|+..+   .|+  +++
T Consensus        15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~--lnG~~~~~~~g~~~~ly   92 (345)
T 3tht_A           15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT--LNGKEVVDDLGQKITLY   92 (345)
T ss_dssp             SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHH--TTTCEEECTTSCEEECE
T ss_pred             CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH--hCCCccccccCCceEEE
Confidence            48999999999  578999999999999999999999988999999999999999999865  888877   244  789


Q ss_pred             EEecc
Q psy9171         100 SLISG  104 (118)
Q Consensus       100 V~~S~  104 (118)
                      ++|+.
T Consensus        93 ~~~~~   97 (345)
T 3tht_A           93 LNFVE   97 (345)
T ss_dssp             EEECS
T ss_pred             EEEee
Confidence            99984

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.61  E-value=2.5e-16  Score=110.51  Aligned_cols=76  Identities=9%  Similarity=0.071  Sum_probs=69.5

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.+..+      +|+|||+|.+.++|..|+.   +|+..+.||+|.|.
T Consensus        85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~---~~~~~~~g~~i~V~  161 (167)
T 2cjk_A           85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ---NKFIDFKDRKIEIK  161 (167)
T ss_dssp             HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH---CSEECSSSSCEEEE
T ss_pred             cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh---CCCEEeCCeEEEEe
Confidence            45779999999999999999999999999999999854      5899999999999999974   78999999999999


Q ss_pred             ecccc
Q psy9171         102 ISGYR  106 (118)
Q Consensus       102 ~S~~~  106 (118)
                      +|..+
T Consensus       162 ~a~pk  166 (167)
T 2cjk_A          162 RAEPR  166 (167)
T ss_dssp             ECCCC
T ss_pred             ecCCC
Confidence            99764

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.61  E-value=1.2e-15  Score=109.73  Aligned_cols=76  Identities=17%  Similarity=0.141  Sum_probs=68.8

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCC----C-------ceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPF----G-------RVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK   96 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~f----G-------~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr   96 (118)
                      .++++|||+|||+++|+++|.++|++|    |       .|.++.+...+|+|||+|.+.++|..|+ .  +|+..+.|+
T Consensus         2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~--l~g~~~~g~   78 (198)
T 2yh0_A            2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-A--FDGIIFQGQ   78 (198)
T ss_dssp             --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-G--GTTEEETTE
T ss_pred             CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-H--hcCCEEcCc
Confidence            467899999999999999999999999    6       7888888888999999999999999998 3  899999999


Q ss_pred             eeEEEecccc
Q psy9171          97 NQVSLISGYR  106 (118)
Q Consensus        97 ~v~V~~S~~~  106 (118)
                      +|.|.+++..
T Consensus        79 ~i~v~~~~~~   88 (198)
T 2yh0_A           79 SLKIRRPHDY   88 (198)
T ss_dssp             EEEEECCCCC
T ss_pred             eEEEeCCCCC
Confidence            9999998754

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.61  E-value=5.6e-16  Score=108.72  Aligned_cols=75  Identities=19%  Similarity=0.121  Sum_probs=67.4

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      |+++|||+|||+++|+++|.++|++||.|.++.++.+      +|+|||+|.+.++|..|+..    +..+.|+++.+.+
T Consensus         2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~----~~~~~g~~i~v~~   77 (167)
T 2cjk_A            2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT----QHILDGKVIDPKR   77 (167)
T ss_dssp             GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS----CCEETTEECCCEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc----ccccCCeEccccc
Confidence            6889999999999999999999999999999999854      58999999999999999853    5689999999998


Q ss_pred             ccccc
Q psy9171         103 SGYRN  107 (118)
Q Consensus       103 S~~~~  107 (118)
                      +..+.
T Consensus        78 ~~~~~   82 (167)
T 2cjk_A           78 AIPRD   82 (167)
T ss_dssp             CCCHH
T ss_pred             ccchh
Confidence            86543

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.61  E-value=5.4e-16  Score=112.85  Aligned_cols=78  Identities=17%  Similarity=0.064  Sum_probs=69.9

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.++.      .+|+|||+|.+.++|..|+..  +|+..+.|++|.|.
T Consensus        26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~~~~~~g~~l~v~  103 (216)
T 2qfj_A           26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ--MNSVMLGGRNIKVG  103 (216)
T ss_dssp             HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHH--HSSCCCC-CCCEEE
T ss_pred             CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHH--ccCCeeCCeeEEEe
Confidence            4578999999999999999999999999999999974      379999999999999999864  78999999999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      ++....
T Consensus       104 ~~~~~~  109 (216)
T 2qfj_A          104 RPSNIG  109 (216)
T ss_dssp             CCSCCG
T ss_pred             cCCCcc
Confidence            987654

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.61  E-value=3.7e-16  Score=113.40  Aligned_cols=75  Identities=21%  Similarity=0.144  Sum_probs=69.9

Q ss_pred             CcEEEeCCCCC-cccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          30 SRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        30 S~vL~V~NLP~-~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      +++|||+|||+ ++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+..  +|+..+.|+++.+.+|+.+
T Consensus         3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~--l~~~~~~g~~l~v~~a~~~   79 (198)
T 1qm9_A            3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSH--LNGHKLHGKPIRITLSKHQ   79 (198)
T ss_dssp             CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHH--HTTCCCSSCCCEEEECCCC
T ss_pred             CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHH--hCCCeecCeEEEEEEecCC
Confidence            57999999999 9999999999999999999999876 69999999999999999854  8899999999999999865

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.60  E-value=1.1e-15  Score=106.46  Aligned_cols=74  Identities=15%  Similarity=0.183  Sum_probs=67.2

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCee--eE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN--QV   99 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~--v~   99 (118)
                      .+++.|||+|||+++|+++|.++|++||.|.++.+..+      +|+|||+|.+.++|..|+..  +|+..+.|+.  |.
T Consensus        86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~~~i~  163 (167)
T 1fxl_A           86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG--LNGQKPSGATEPIT  163 (167)
T ss_dssp             GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--HTTCCCTTCSSCCE
T ss_pred             CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH--hcCCccCCCccceE
Confidence            56789999999999999999999999999999999753      68999999999999999854  8899999974  88


Q ss_pred             EEec
Q psy9171         100 SLIS  103 (118)
Q Consensus       100 V~~S  103 (118)
                      |.||
T Consensus       164 v~~A  167 (167)
T 1fxl_A          164 VKFA  167 (167)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            8886

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=99.60  E-value=1.2e-15  Score=126.67  Aligned_cols=77  Identities=9%  Similarity=0.110  Sum_probs=71.1

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .|+.+|||+|||+++|+++|..+|++||.|..+.++.+      +|+|||+|.+.++|..|+..  +|+..|.|++|.|.
T Consensus       100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~--lng~~i~gr~i~V~  177 (437)
T 3pgw_S          100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH--ADGKKIDGRRVLVD  177 (437)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH--cCCCEECCEEEEEE
Confidence            56789999999999999999999999999999999753      79999999999999999864  89999999999999


Q ss_pred             ecccc
Q psy9171         102 ISGYR  106 (118)
Q Consensus       102 ~S~~~  106 (118)
                      +++.+
T Consensus       178 ~a~~~  182 (437)
T 3pgw_S          178 VERGR  182 (437)
T ss_pred             EeCCC
Confidence            99754

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=99.60  E-value=3.9e-16  Score=112.34  Aligned_cols=76  Identities=12%  Similarity=0.204  Sum_probs=67.2

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      .++++|||+|||+++||+||.++|++|| +.++.++.+     ||+|||||++.++|..|+ .  +|+..+.||.|.|..
T Consensus        44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~--~~g~~l~gR~i~V~~  119 (139)
T 2hgn_A           44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-S--KDRANMQHRYIELFL  119 (139)
T ss_dssp             -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-T--CCSCSSSSCCCCCEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-h--hCCCEECCEEEEEEE
Confidence            4577899999999999999999999999 668988753     789999999999999998 3  789999999999999


Q ss_pred             ccccc
Q psy9171         103 SGYRN  107 (118)
Q Consensus       103 S~~~~  107 (118)
                      |+.+.
T Consensus       120 a~~~~  124 (139)
T 2hgn_A          120 NSTTG  124 (139)
T ss_dssp             CCCSC
T ss_pred             CCCCC
Confidence            87643

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=99.60  E-value=8.3e-16  Score=120.12  Aligned_cols=78  Identities=12%  Similarity=0.094  Sum_probs=70.7

Q ss_pred             CCCcEEEeCCCCCcc---------cHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceee-----
Q psy9171          28 KPSRVIHIRNIPNEV---------TEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVL-----   93 (118)
Q Consensus        28 ~PS~vL~V~NLP~~v---------te~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i-----   93 (118)
                      .++++|||+|||+++         ||++|..+|++||.|.++.++..||+|||+|.+.++|..|+..  +|+..+     
T Consensus       132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~a--m~g~~l~~~~~  209 (240)
T 3u1l_A          132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEA--MSNQTLLLPSD  209 (240)
T ss_dssp             CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHH--HTTCCCCCTTS
T ss_pred             cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHH--hCCCEEecccc
Confidence            578999999999998         8999999999999999999999999999999999999999865  788888     


Q ss_pred             -------CCeeeEEEeccccc
Q psy9171          94 -------KGKNQVSLISGYRN  107 (118)
Q Consensus        94 -------~Gr~v~V~~S~~~~  107 (118)
                             .|++|.|.+|+...
T Consensus       210 ~e~~~~~~gr~L~V~wA~~~p  230 (240)
T 3u1l_A          210 KEWDDRREGTGLLVKWANEDP  230 (240)
T ss_dssp             TTGGGGGGSCCCEEEECC---
T ss_pred             ccccccCCCCEEEEEEccCCC
Confidence                   89999999998643

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.60  E-value=3e-15  Score=114.19  Aligned_cols=80  Identities=14%  Similarity=0.064  Sum_probs=72.7

Q ss_pred             CCCCCcEEEeCCCCCcc-cHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          26 DFKPSRVIHIRNIPNEV-TEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~v-te~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      ...++++|||+|||+++ |+++|.++|++||.|.++.+..+     +|+|||+|.+.++|..|+..  +|+..+.||+|.
T Consensus       180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~  257 (284)
T 3smz_A          180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQ--ADGLSLGGSHLR  257 (284)
T ss_dssp             TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHH--HTTCEETTEECE
T ss_pred             ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHH--hCCCccCCeEEE
Confidence            33678999999999995 99999999999999999999864     79999999999999999864  899999999999


Q ss_pred             EEeccccc
Q psy9171         100 SLISGYRN  107 (118)
Q Consensus       100 V~~S~~~~  107 (118)
                      |.|++.+.
T Consensus       258 v~~a~~~~  265 (284)
T 3smz_A          258 VSFCAPGP  265 (284)
T ss_dssp             EEECCSSS
T ss_pred             EEEecCCC
Confidence            99998764

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.59  E-value=1e-15  Score=107.63  Aligned_cols=77  Identities=12%  Similarity=0.111  Sum_probs=66.2

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec--------cCceEEEeecchhhhhcccccccccceeeC---Cee
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK--------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLK---GKN   97 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~--------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~---Gr~   97 (118)
                      .+++|||+|||+++|+++|.++|++||.|.++.++.        .+|+|||+|.+.++|..|+..  +|+..+.   +++
T Consensus         2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~~~~~~~~~~~~   79 (175)
T 3nmr_A            2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNA--LHNMKVLPGMHHP   79 (175)
T ss_dssp             CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHH--HTTTCCCTTCSSC
T ss_pred             CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHH--hcCcEEccCCccc
Confidence            578999999999999999999999999999999984        368999999999999999854  6665554   678


Q ss_pred             eEEEeccccc
Q psy9171          98 QVSLISGYRN  107 (118)
Q Consensus        98 v~V~~S~~~~  107 (118)
                      +.+.++..+.
T Consensus        80 ~~~~~~~~~~   89 (175)
T 3nmr_A           80 IQMKPADSEK   89 (175)
T ss_dssp             CEEEECGGGC
T ss_pred             eEEccccccc
Confidence            8888876543

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=99.59  E-value=1.2e-15  Score=108.43  Aligned_cols=73  Identities=8%  Similarity=0.107  Sum_probs=64.7

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCcee--EEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVT--NVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~--~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      .++.+|||+|||+++||+||.++|++| .|.  ++.++.+     ||+|||+|++.++|..|+.   .++..+.||+|.|
T Consensus        40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~---~~~~~l~gR~I~V  115 (126)
T 2hgm_A           40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG---KHKERIGHRYIEV  115 (126)
T ss_dssp             SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT---TTTCCBTTBCCCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH---HCCCEECCEEEEE
Confidence            557899999999999999999999999 566  8888743     7999999999999999985   3579999999999


Q ss_pred             Eecc
Q psy9171         101 LISG  104 (118)
Q Consensus       101 ~~S~  104 (118)
                      ..|+
T Consensus       116 ~~a~  119 (126)
T 2hgm_A          116 FKSS  119 (126)
T ss_dssp             EEEC
T ss_pred             EECC
Confidence            9984

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.59  E-value=3.2e-15  Score=114.01  Aligned_cols=76  Identities=18%  Similarity=0.145  Sum_probs=70.1

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      .++++|||+|||+++|+++|.++|++|| |.++.+-+.+|+|||+|.+.++|..|+..  +|+..+.|+++.+.++...
T Consensus        20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~~~~~~g~~i~v~~~~~~   95 (284)
T 3smz_A           20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINA--FHQSRLRERELSVQLQPTD   95 (284)
T ss_dssp             HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHH--HTTCEETTEECEEEECCCS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHH--cCCCeeCCeEEEEEecCCC
Confidence            5788999999999999999999999999 99999977899999999999999999854  7899999999999998653

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.9e-15  Score=103.21  Aligned_cols=72  Identities=22%  Similarity=0.187  Sum_probs=59.7

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec---------cCceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK---------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ   98 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~---------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v   98 (118)
                      .++++|||+|||+++|+++|.++|++||.|. +.++.         .||+|||+|++.++|..|+..  +  ..++|+.+
T Consensus         6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~--~--~~~~G~~~   80 (114)
T 2dnl_A            6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDA--C--LEEDGKLY   80 (114)
T ss_dssp             SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHH--S--EEETTEEE
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHh--h--hhcCCcEE
Confidence            6788999999999999999999999999999 66653         278999999999999999864  3  23677777


Q ss_pred             EEEecc
Q psy9171          99 VSLISG  104 (118)
Q Consensus        99 ~V~~S~  104 (118)
                      .+..+.
T Consensus        81 ~~~~~~   86 (114)
T 2dnl_A           81 LCVSSP   86 (114)
T ss_dssp             EEECCS
T ss_pred             EeccCC
Confidence            666543

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=5.9e-15  Score=100.67  Aligned_cols=80  Identities=10%  Similarity=0.076  Sum_probs=68.2

Q ss_pred             CCCCCcEEEeCCCCC--cc---------cHHHHHHhccCCCceeEEEEec--cCceEEEeecchhhhhccccccccccee
Q psy9171          26 DFKPSRVIHIRNIPN--EV---------TEAEIIHLGIPFGRVTNVLVLK--GKNQLLLHLEAEIIHLGIPFGRVTNVLV   92 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~--~v---------te~dL~~Lf~~fG~V~~v~l~~--~kgqAFVEm~~~e~A~~ai~~~~~n~~~   92 (118)
                      ...||++|+|+||..  ++         ++++|.++|++||.|.++.+..  .+|+|||+|.+.++|..|+..  +|+..
T Consensus        11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~--lng~~   88 (112)
T 2dit_A           11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQT--LDGRW   88 (112)
T ss_dssp             CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHH--STTCE
T ss_pred             CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHH--cCCCE
Confidence            337899999999943  32         3689999999999999997753  379999999999999999854  89999


Q ss_pred             eCCeeeEEEeccccc
Q psy9171          93 LKGKNQVSLISGYRN  107 (118)
Q Consensus        93 i~Gr~v~V~~S~~~~  107 (118)
                      +.||+|.+.|+..+.
T Consensus        89 ~~gr~l~v~~a~~~~  103 (112)
T 2dit_A           89 FGGRQITAQAWDGTT  103 (112)
T ss_dssp             ETTEECEEEECCSCC
T ss_pred             ECCcEEEEEEeCCCC
Confidence            999999999987643

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.58  E-value=3.2e-15  Score=114.48  Aligned_cols=78  Identities=17%  Similarity=0.144  Sum_probs=70.9

Q ss_pred             CCCCCcEEEeCCCCCc-ccHHHHHHhccCCCceeEEEEecc-------CceEEEeecchhhhhcccccccccceeeCCee
Q psy9171          26 DFKPSRVIHIRNIPNE-VTEAEIIHLGIPFGRVTNVLVLKG-------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN   97 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~-vte~dL~~Lf~~fG~V~~v~l~~~-------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~   97 (118)
                      ...++++|||+|||++ +|+++|.++|++||.|.++.++.+       +|+|||+|.+.++|..|+ .  +|+..+.||+
T Consensus       206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~--l~g~~~~g~~  282 (292)
T 2ghp_A          206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q--MNRSLLGNRE  282 (292)
T ss_dssp             -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G--GTTEEETTEE
T ss_pred             cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H--hcCCEECCcE
Confidence            3467899999999999 999999999999999999999753       688999999999999998 5  8999999999


Q ss_pred             eEEEecccc
Q psy9171          98 QVSLISGYR  106 (118)
Q Consensus        98 v~V~~S~~~  106 (118)
                      |.|.||+.+
T Consensus       283 i~V~~a~~k  291 (292)
T 2ghp_A          283 ISVSLADKK  291 (292)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEEecCC
Confidence            999999764

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=99.57  E-value=2.7e-15  Score=111.96  Aligned_cols=73  Identities=15%  Similarity=0.119  Sum_probs=65.2

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      +++|||+|||+++|+++|.++|++||.|.++++..     .||+|||||++.++|..|+..  . +..+.||+|.|..++
T Consensus       109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~--~-~~~~~Gr~l~V~~~~  185 (193)
T 2voo_A          109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET--P-GQKYKETDLLILFKD  185 (193)
T ss_dssp             HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHC--T-TCEETTEECEEEETT
T ss_pred             cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHh--C-CCeECCEEEEEEEhH
Confidence            57899999999999999999999999999999985     379999999999999999853  3 459999999999875


Q ss_pred             c
Q psy9171         105 Y  105 (118)
Q Consensus       105 ~  105 (118)
                      .
T Consensus       186 ~  186 (193)
T 2voo_A          186 D  186 (193)
T ss_dssp             T
T ss_pred             H
Confidence            3

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.57  E-value=2.9e-15  Score=114.71  Aligned_cols=76  Identities=9%  Similarity=0.010  Sum_probs=68.1

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      .++++|||+|||+++|+++|.++|++||.|.++.+++    .+|+|||+|.+.++|..|+.   +|+..+.|+++.+.++
T Consensus        39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~---~~~~~~~g~~i~v~~~  115 (292)
T 2ghp_A           39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT---KTHKVVGQNEIIVSHL  115 (292)
T ss_dssp             ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT---TTTCEETTEECEEEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH---hCCcEeCCcEEEEEEC
Confidence            6689999999999999999999999999999999987    47999999999999999983   7899999999999988


Q ss_pred             ccc
Q psy9171         104 GYR  106 (118)
Q Consensus       104 ~~~  106 (118)
                      ...
T Consensus       116 ~~~  118 (292)
T 2ghp_A          116 TEC  118 (292)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            654

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.56  E-value=3.9e-15  Score=101.96  Aligned_cols=76  Identities=12%  Similarity=0.165  Sum_probs=67.1

Q ss_pred             CCCCcEEEeCCC--CCccc--------HHHHHHhccCCCceeEEEEecc--------CceEEEeecchhhhhcccccccc
Q psy9171          27 FKPSRVIHIRNI--PNEVT--------EAEIIHLGIPFGRVTNVLVLKG--------KNQLLLHLEAEIIHLGIPFGRVT   88 (118)
Q Consensus        27 ~~PS~vL~V~NL--P~~vt--------e~dL~~Lf~~fG~V~~v~l~~~--------kgqAFVEm~~~e~A~~ai~~~~~   88 (118)
                      ..||++|.++|+  |.++.        ++||.+.|++||.|.++.+.++        +|+|||+|++.++|..|+..  +
T Consensus         2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~--l   79 (105)
T 3v4m_A            2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQG--L   79 (105)
T ss_dssp             CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHH--H
T ss_pred             CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHH--h
Confidence            479999999998  54553        4789999999999999999742        69999999999999999865  9


Q ss_pred             cceeeCCeeeEEEecc
Q psy9171          89 NVLVLKGKNQVSLISG  104 (118)
Q Consensus        89 n~~~i~Gr~v~V~~S~  104 (118)
                      |+..+.||+|.+.|+.
T Consensus        80 nG~~f~GR~i~v~~~~   95 (105)
T 3v4m_A           80 TGRKFANRVVVTKYCD   95 (105)
T ss_dssp             TTCEETTEECEEEEEC
T ss_pred             CCCEeCCCEEEEEEeC
Confidence            9999999999999984

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=99.54  E-value=1.1e-14  Score=106.05  Aligned_cols=86  Identities=6%  Similarity=0.028  Sum_probs=71.7

Q ss_pred             cEEEeCCC----CCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecc----h-hh---hhccccccccccee
Q psy9171          31 RVIHIRNI----PNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEA----E-II---HLGIPFGRVTNVLV   92 (118)
Q Consensus        31 ~vL~V~NL----P~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~----~-e~---A~~ai~~~~~n~~~   92 (118)
                      ..|||+||    |+.++|.+|.++|++||.|.++.++.+      +|+|||+|.|    + ++   |..|+..+.+|+..
T Consensus         3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~   82 (136)
T 2j8a_A            3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF   82 (136)
T ss_dssp             CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred             cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence            46999999    999999999999999999999999854      8999999996    3 33   77777644689999


Q ss_pred             eCCeeeEEEeccccchHHHHHhhh
Q psy9171          93 LKGKNQVSLISGYRNRQSAALMMI  116 (118)
Q Consensus        93 i~Gr~v~V~~S~~~~~~~~~~~~~  116 (118)
                      |.||+++|++-+.--++-+++..|
T Consensus        83 I~Gr~irV~ln~~g~~~~~~~~~i  106 (136)
T 2j8a_A           83 IMGFKFEVILNKHSILNNIISKFV  106 (136)
T ss_dssp             ETTEEEEEEECCTTHHHHHHHHHH
T ss_pred             ecCcEEEEEECcccHHHHHHHHHH
Confidence            999999999998877766655443

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.51  E-value=2.3e-14  Score=101.59  Aligned_cols=76  Identities=12%  Similarity=-0.088  Sum_probs=66.3

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeE-----EEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN-----VLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~-----v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      .++++|||+|||+++|+++|.++|++||.+..     ...-..||+|||+|.+.++|..|+ .  +|+..+.|+++.|.+
T Consensus        11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~--l~g~~~~g~~l~v~~   87 (175)
T 1fje_B           11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-E--LTGLKVFGNEIKLEK   87 (175)
T ss_dssp             SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-H--GGGEEETTEEEEEEC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-h--cCCCEeCCeEEEEec
Confidence            67899999999999999999999999987655     222235899999999999999998 3  899999999999999


Q ss_pred             cccc
Q psy9171         103 SGYR  106 (118)
Q Consensus       103 S~~~  106 (118)
                      +..+
T Consensus        88 ~~~~   91 (175)
T 1fje_B           88 PKGR   91 (175)
T ss_dssp             CCCS
T ss_pred             CCCc
Confidence            9864

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=99.48  E-value=4.8e-14  Score=98.91  Aligned_cols=76  Identities=17%  Similarity=0.202  Sum_probs=66.5

Q ss_pred             CCCcEEEeCCCCC--c---ccHHHHHHhccCCCceeEEEEecc----------CceEEEeecchhhhhccccccccccee
Q psy9171          28 KPSRVIHIRNIPN--E---VTEAEIIHLGIPFGRVTNVLVLKG----------KNQLLLHLEAEIIHLGIPFGRVTNVLV   92 (118)
Q Consensus        28 ~PS~vL~V~NLP~--~---vte~dL~~Lf~~fG~V~~v~l~~~----------kgqAFVEm~~~e~A~~ai~~~~~n~~~   92 (118)
                      +||+||.++|+-.  +   -.++||.+.|++||.|.++.+..+          +|+|||+|++.++|..|+..  +|+.+
T Consensus        18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~--LnGr~   95 (118)
T 3ue2_A           18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQA--LNGRW   95 (118)
T ss_dssp             HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHH--HTTCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHH--HCCCE
Confidence            5899999999942  2   347999999999999999999753          37899999999999999865  99999


Q ss_pred             eCCeeeEEEeccc
Q psy9171          93 LKGKNQVSLISGY  105 (118)
Q Consensus        93 i~Gr~v~V~~S~~  105 (118)
                      +.||+|.+.|+.-
T Consensus        96 f~GR~i~v~~~~~  108 (118)
T 3ue2_A           96 FAGRKVVAEVYDQ  108 (118)
T ss_dssp             ETTEECEEEEECH
T ss_pred             ECCcEEEEEEcCh
Confidence            9999999999853

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.44  E-value=1.3e-13  Score=105.38  Aligned_cols=77  Identities=10%  Similarity=0.034  Sum_probs=67.8

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccc-cceeeC---Ceee
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVT-NVLVLK---GKNQ   98 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~-n~~~i~---Gr~v   98 (118)
                      .|+.+|||+|||+++|+++|.++|++||.|.++.++.+     +|+|||+|.+.++|..|+..  + ++..+.   ||++
T Consensus        94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~~~~~~~~~~~r~i  171 (261)
T 3sde_A           94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER--CGDGAFLLTTTPRPV  171 (261)
T ss_dssp             CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHH--HHHSCEESSSSCCBC
T ss_pred             ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHH--hcCCeEEecCCCceE
Confidence            46789999999999999999999999999999999864     79999999999999999864  5 455555   9999


Q ss_pred             EEEecccc
Q psy9171          99 VSLISGYR  106 (118)
Q Consensus        99 ~V~~S~~~  106 (118)
                      .|.++...
T Consensus       172 ~v~~~~~~  179 (261)
T 3sde_A          172 IVEPMEQF  179 (261)
T ss_dssp             EEEECCCE
T ss_pred             EEeecccc
Confidence            99998754

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=9.1e-13  Score=90.07  Aligned_cols=74  Identities=7%  Similarity=-0.040  Sum_probs=61.7

Q ss_pred             CcEEEeCCCC-------CcccHHHHHHhccCCCceeEEEEec-cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          30 SRVIHIRNIP-------NEVTEAEIIHLGIPFGRVTNVLVLK-GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        30 S~vL~V~NLP-------~~vte~dL~~Lf~~fG~V~~v~l~~-~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .+.|-|+-.+       +++||++|.++|++||.|.++.++. .||+|||||++.++|..|+..  .++  +.|++|.|.
T Consensus        10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~--~~~--~~g~~l~V~   85 (100)
T 2d9o_A           10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN--EVG--LVDNPLKIS   85 (100)
T ss_dssp             SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT--CCB--CSSSBCEEE
T ss_pred             cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh--cCC--CCCCeEEEE
Confidence            4566666554       4689999999999999999999984 589999999999999999864  334  679999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      +++.+.
T Consensus        86 ~a~~~~   91 (100)
T 2d9o_A           86 WLEGQP   91 (100)
T ss_dssp             CSSCCC
T ss_pred             EccCCC
Confidence            997653

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=99.39  E-value=6.5e-13  Score=92.72  Aligned_cols=77  Identities=12%  Similarity=0.085  Sum_probs=66.8

Q ss_pred             CCCCcEEEeCCCCC--c--------ccHHHHHHhccCCCceeEEEEecc--CceEEEeecchhhhhcccccccccceeeC
Q psy9171          27 FKPSRVIHIRNIPN--E--------VTEAEIIHLGIPFGRVTNVLVLKG--KNQLLLHLEAEIIHLGIPFGRVTNVLVLK   94 (118)
Q Consensus        27 ~~PS~vL~V~NLP~--~--------vte~dL~~Lf~~fG~V~~v~l~~~--kgqAFVEm~~~e~A~~ai~~~~~n~~~i~   94 (118)
                      ..||++|.++|+=.  +        -.++||.+.|++||.|.++.+.++  +|+|||+|++.++|..|+..  +|+.++.
T Consensus         4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~--lnG~~f~   81 (114)
T 3s6e_A            4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNA--LHGRWFA   81 (114)
T ss_dssp             CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHH--HTTCEET
T ss_pred             CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHH--hCCCEEC
Confidence            36899999999854  2        235688999999999999999764  79999999999999999865  9999999


Q ss_pred             CeeeEEEeccc
Q psy9171          95 GKNQVSLISGY  105 (118)
Q Consensus        95 Gr~v~V~~S~~  105 (118)
                      ||+|.+.|+.-
T Consensus        82 GR~i~v~~~~~   92 (114)
T 3s6e_A           82 GKMITAAYVPL   92 (114)
T ss_dssp             TEECEEEEECH
T ss_pred             CEEEEEEEEcH
Confidence            99999999854

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=99.35  E-value=1.3e-13  Score=94.05  Aligned_cols=67  Identities=13%  Similarity=0.122  Sum_probs=58.7

Q ss_pred             eCCCCCcccHHHHHHhc------------cCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCee
Q psy9171          35 IRNIPNEVTEAEIIHLG------------IPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN   97 (118)
Q Consensus        35 V~NLP~~vte~dL~~Lf------------~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~   97 (118)
                      +.+||+++++++|.+.|            ++||.|.++.+.++     ||+|||+|++.++|..|+..  +|+..+.||+
T Consensus        20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~--lng~~~~Gr~   97 (104)
T 1jmt_A           20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVID--LNNRWFNGQP   97 (104)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHH--HTTCEETTEE
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHH--HCCCEECCEE
Confidence            45677888888887666            99999999999864     79999999999999999864  8999999999


Q ss_pred             eEEEec
Q psy9171          98 QVSLIS  103 (118)
Q Consensus        98 v~V~~S  103 (118)
                      |.+.||
T Consensus        98 i~v~~s  103 (104)
T 1jmt_A           98 IHAELS  103 (104)
T ss_dssp             CCEEEC
T ss_pred             EEEEEc
Confidence            999997

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.31  E-value=2.6e-12  Score=91.44  Aligned_cols=79  Identities=11%  Similarity=0.073  Sum_probs=70.4

Q ss_pred             CCCCcEEEeCCCCCc-ccHHHHHHhccCCCceeEEEEeccCceEEEeecc-hhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          27 FKPSRVIHIRNIPNE-VTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEA-EIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~-vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~-~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      -+|+-+|||+|||++ +++++|.++|++||.|..|.+..+...|||+|.+ +++|..|+.....+++.|+|..+.+....
T Consensus        15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~   94 (121)
T 1owx_A           15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE   94 (121)
T ss_dssp             CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred             ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence            377889999999999 9999999999999999999999998899999999 78999888764446999999999887764


Q ss_pred             c
Q psy9171         105 Y  105 (118)
Q Consensus       105 ~  105 (118)
                      -
T Consensus        95 G   95 (121)
T 1owx_A           95 G   95 (121)
T ss_dssp             H
T ss_pred             C
Confidence            3

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=5.8e-11  Score=81.16  Aligned_cols=75  Identities=11%  Similarity=0.079  Sum_probs=64.0

Q ss_pred             CCCCCcEEEeCCCCC----cccH----HHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCee
Q psy9171          26 DFKPSRVIHIRNIPN----EVTE----AEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN   97 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~----~vte----~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~   97 (118)
                      ..||.-+|.|.-.|.    ..-+    .+|.+.|++||.|..++++.++  +||+|++.++|.+|+.   +|+..+.||+
T Consensus         3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~---mnG~~v~Gr~   77 (91)
T 2dnr_A            3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS---LNGKELLNRT   77 (91)
T ss_dssp             CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG---GTTCEETTEE
T ss_pred             CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh---cCCeEeCCeE
Confidence            358888888888772    2334    6678999999999999999866  9999999999999983   9999999999


Q ss_pred             eEEEeccc
Q psy9171          98 QVSLISGY  105 (118)
Q Consensus        98 v~V~~S~~  105 (118)
                      +.|+.++-
T Consensus        78 LkV~lkt~   85 (91)
T 2dnr_A           78 ITIALKSP   85 (91)
T ss_dssp             EEEEECCC
T ss_pred             EEEEeCCC
Confidence            99999864

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.96  E-value=9.3e-10  Score=81.89  Aligned_cols=76  Identities=17%  Similarity=0.169  Sum_probs=64.9

Q ss_pred             CCCCcEEEeCCCCC-----cccHHHHHHhccCCCceeEEEEe----------ccCceEEEeecchhhhhcccccccccce
Q psy9171          27 FKPSRVIHIRNIPN-----EVTEAEIIHLGIPFGRVTNVLVL----------KGKNQLLLHLEAEIIHLGIPFGRVTNVL   91 (118)
Q Consensus        27 ~~PS~vL~V~NLP~-----~vte~dL~~Lf~~fG~V~~v~l~----------~~kgqAFVEm~~~e~A~~ai~~~~~n~~   91 (118)
                      ..+++++.+.|+-.     +-.+++|.+.|++||.|.++.+.          +.+|++||+|.+.++|.+|+..  +|+.
T Consensus       121 ~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~--l~gr  198 (222)
T 3dxb_A          121 AMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQA--LNGR  198 (222)
T ss_dssp             CCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHH--HTTC
T ss_pred             ccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHH--hcCc
Confidence            35677888877753     34578899999999999999997          3468999999999999999965  9999


Q ss_pred             eeCCeeeEEEecc
Q psy9171          92 VLKGKNQVSLISG  104 (118)
Q Consensus        92 ~i~Gr~v~V~~S~  104 (118)
                      ++.||+|.+.|+.
T Consensus       199 ~~~gr~i~~~~~~  211 (222)
T 3dxb_A          199 WFAGRKVVAEVYD  211 (222)
T ss_dssp             BSSSSBCEEEECC
T ss_pred             eECCeEEEEEEcC
Confidence            9999999999984

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.95  E-value=8.4e-10  Score=75.95  Aligned_cols=74  Identities=11%  Similarity=0.077  Sum_probs=63.3

Q ss_pred             CCCCCCcEEEeCCCCCc-----ccH----HHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCC
Q psy9171          25 SDFKPSRVIHIRNIPNE-----VTE----AEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKG   95 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~-----vte----~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G   95 (118)
                      ...||.-+|.|.-+++.     .-+    .+|.+.|.+||.|..+++..++  +||+|.+.++|.+|+.   +|+..+.|
T Consensus        10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~---ldG~~v~G   84 (95)
T 1ufw_A           10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD---VDGMKVKG   84 (95)
T ss_dssp             CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH---GGGSEETT
T ss_pred             ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh---cCCeeeCC
Confidence            44589999999988743     222    5678899999999999999876  9999999999999983   99999999


Q ss_pred             eeeEEEec
Q psy9171          96 KNQVSLIS  103 (118)
Q Consensus        96 r~v~V~~S  103 (118)
                      |++.|++-
T Consensus        85 r~L~V~~k   92 (95)
T 1ufw_A           85 RAVKISGP   92 (95)
T ss_dssp             EEEEEECC
T ss_pred             eEEEEecc
Confidence            99999864

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=98.56  E-value=1.3e-07  Score=67.14  Aligned_cols=71  Identities=13%  Similarity=0.115  Sum_probs=65.8

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCC-----CceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPF-----GRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~f-----G~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      ..++|=+=|||+.+++..+++|.+||     |.+.++.+.++.+-|+|||+|...|-.|.-  .+||.++.||.+.+.
T Consensus        20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasL--aL~G~ef~gr~Lr~g   95 (117)
T 2l9w_A           20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLM--ILNGSQFQGKVIRSG   95 (117)
T ss_dssp             TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHH--HHSSEEETTEEEEEE
T ss_pred             CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHh--hcCCeeecCeEEEec
Confidence            37899999999999999999999999     999999999999999999999999999853  489999999999874

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.41  E-value=0.0002  Score=49.72  Aligned_cols=73  Identities=11%  Similarity=0.039  Sum_probs=62.3

Q ss_pred             EEEeCCCCCcc-cH----HHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          32 VIHIRNIPNEV-TE----AEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        32 vL~V~NLP~~v-te----~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      +|.|.|||.++ +.    ..+.+||..|++...+-.++.=.-..|-|.+.++|.+|=  ..+++..+.|+.+++.|++..
T Consensus         7 tLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR--~~Lh~~~f~g~~~r~YFgq~~   84 (104)
T 1wey_A            7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADAR--LRLHKTEFLGKEMKLYFAQTL   84 (104)
T ss_dssp             EEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHH--HTSTTSEETTEECEEECCCCS
T ss_pred             eEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHH--HHhccceecCceeEEEecCCC
Confidence            59999999876 43    456889999999999999987667899999999999993  358899999999999999754

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=97.23  E-value=0.0001  Score=62.25  Aligned_cols=54  Identities=15%  Similarity=0.238  Sum_probs=42.2

Q ss_pred             cEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccC-ceEEEeecchhhhhccccc
Q psy9171          31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGK-NQLLLHLEAEIIHLGIPFG   85 (118)
Q Consensus        31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~k-gqAFVEm~~~e~A~~ai~~   85 (118)
                      |.|+|. .|.++++.+|.+.|++||+|.++.+-+++ .+|.|||++.+++..++..
T Consensus        54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~  108 (464)
T 3pq1_A           54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG  108 (464)
T ss_dssp             TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred             ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence            578897 89999999999999999999999999865 6899999999999877543

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.17  E-value=0.0016  Score=45.19  Aligned_cols=68  Identities=13%  Similarity=0.020  Sum_probs=53.8

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccC-C----CceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIP-F----GRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~-f----G~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      .-.++|.|+|||+++.++.|.-.|+. -    |.|.++....  +.|+|+|.+.+.|.+.+..   ..-.++|.++.|
T Consensus         6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k---~~H~L~~~~LsV   78 (104)
T 2dhx_A            6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ---ADHELHGAQLSL   78 (104)
T ss_dssp             CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC---SCCBSSSSBCEE
T ss_pred             cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC---CcceecCeEEEE
Confidence            45678999999999998877777877 2    7889998877  8999999999999998753   144555655554

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=96.87  E-value=0.00085  Score=46.41  Aligned_cols=52  Identities=15%  Similarity=0.247  Sum_probs=42.6

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccc
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPF   84 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~   84 (118)
                      ..|+|+ +.|++..-.||.+||++||.|. +.-+ +-..|||.|.+.+.|..|+.
T Consensus         6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~Wi-dDTsAlvvf~~~~~a~~al~   57 (101)
T 3ctr_A            6 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWI-DDTSAFVSLSQPEQVKIAVN   57 (101)
T ss_dssp             EEEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEE-ETTEEEEEEEEECHHHHHHH
T ss_pred             CeEEEE-eCChhhhhHHHHHHHhccCCEE-EEEE-cCCeEEEEecCHHHHHHHHH
Confidence            458999 9999999999999999999432 2223 44789999999999988765

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=96.46  E-value=0.0025  Score=43.97  Aligned_cols=52  Identities=15%  Similarity=0.250  Sum_probs=43.3

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccc
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPF   84 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~   84 (118)
                      ..|+|+ +.|++..-.||.+||++||.|. +.=+ +-..|||.|.+.+.|..|+.
T Consensus        16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wi-dDTsAlvvf~~~~~a~~al~   67 (100)
T 1whv_A           16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWI-DDTSAFVSLSQPEQVQIAVN   67 (100)
T ss_dssp             CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEE-ETTEEEEECSCHHHHHHHHH
T ss_pred             CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEE-cCCeEEEEecCHHHHHHHHH
Confidence            568999 9999999999999999999643 2223 34789999999999988765

>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4

Probab=96.08  E-value=0.01  Score=39.83  Aligned_cols=52  Identities=10%  Similarity=0.140  Sum_probs=43.6

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEeccC--------ceEEEeecchhhhhccc
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGK--------NQLLLHLEAEIIHLGIP   83 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~k--------gqAFVEm~~~e~A~~ai   83 (118)
                      .|.||+||+..||+++.+..++.+.+.-....+++        .-|.|.|.+.++.....
T Consensus         3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~   62 (91)
T 1uw4_A            3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFR   62 (91)
T ss_dssp             EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHH
T ss_pred             EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHH
Confidence            47899999999999999999999988777776542        45999999988877664

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=93.91  E-value=0.16  Score=35.68  Aligned_cols=63  Identities=6%  Similarity=0.095  Sum_probs=52.2

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCe
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK   96 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr   96 (118)
                      ..-|.|-..|++. -..++..|+.||.|++.....+.|---|.|++..+|.+|+.   .|+..+.|.
T Consensus        24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~---kNG~ii~g~   86 (119)
T 1wwh_A           24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS---KDGRIFGES   86 (119)
T ss_dssp             GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT---TTTCEETTT
T ss_pred             CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH---hCCeEecCC
Confidence            4457788888874 66788999999999999986678999999999999999974   678777653

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=93.86  E-value=0.019  Score=39.59  Aligned_cols=38  Identities=8%  Similarity=-0.215  Sum_probs=33.7

Q ss_pred             CceEEEeecchhhhhcccccccc-cceeeCCeeeEEEecccc
Q psy9171          66 KNQLLLHLEAEIIHLGIPFGRVT-NVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        66 kgqAFVEm~~~e~A~~ai~~~~~-n~~~i~Gr~v~V~~S~~~  106 (118)
                      +|++++||.+.++|..|+..  + |+..+.| ++.+.+++.+
T Consensus        13 ~G~~~ve~~~~~~A~~a~~~--~~ng~~~~G-~~~~~~a~~~   51 (150)
T 2i2y_A           13 KGETTTEAVDAATAEKVFKQ--YANDNGVDG-EWTYDDATKT   51 (150)
T ss_dssp             CEEEEEECSSHHHHTTTHHH--HHHHHTCCC-EEEEETTTTE
T ss_pred             cccceeeecCHHHHHHHHHH--HhcCCCCCC-ceecccccCc
Confidence            79999999999999999854  5 8999999 9999998753

>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}

Probab=93.20  E-value=0.092  Score=35.72  Aligned_cols=56  Identities=13%  Similarity=0.122  Sum_probs=41.5

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc--------CceEEEeecchhhhhccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG--------KNQLLLHLEAEIIHLGIP   83 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~--------kgqAFVEm~~~e~A~~ai   83 (118)
                      ..|-.|-||.||+..||+++.+.+++.-.+......++        -.-|.|.|.+.++.....
T Consensus         7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~   70 (97)
T 2l08_A            7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFR   70 (97)
T ss_dssp             CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHH
T ss_pred             ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHH
Confidence            34667999999999999999998888766544333333        234899999988876653

>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}

Probab=88.89  E-value=0.42  Score=40.25  Aligned_cols=53  Identities=15%  Similarity=0.238  Sum_probs=43.1

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhccccc
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFG   85 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~   85 (118)
                      +.|+|++ .|..++..+|.++|++||.| .+.-+ +..-|||.+.+.+.|..++..
T Consensus       440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi-ddt~a~V~~~~~~~a~~~l~~  492 (507)
T 3d45_A          440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQPEQVQIAVNT  492 (507)
T ss_dssp             GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC-SSSEEEEECSCHHHHHHHHHH
T ss_pred             CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE-cCCeEEEEECCHHHHHHHHHH
Confidence            4589998 89999999999999999964 44433 456799999999999887654

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=82.79  E-value=0.34  Score=33.18  Aligned_cols=19  Identities=5%  Similarity=-0.202  Sum_probs=17.5

Q ss_pred             CceEEEeecchhhhhcccc
Q psy9171          66 KNQLLLHLEAEIIHLGIPF   84 (118)
Q Consensus        66 kgqAFVEm~~~e~A~~ai~   84 (118)
                      +|+|||||.+.++|..|+.
T Consensus        13 ~G~~fV~f~~~~~A~~al~   31 (158)
T 2kn4_A           13 KGETTTEAVDAATAEKVFK   31 (158)
T ss_dssp             EEEEEEECSSHHHHHHHHH
T ss_pred             cchhHHHHHHHHhHHHHHH
Confidence            7999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d1x4da1	89	d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [	2e-07
d1wexa_	104	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	1e-05
d2adca2	88	d.58.7.1 (A:444-531) Polypyrimidine tract-binding	2e-04
d2cpxa1	102	d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41	0.001
d2cq1a1	88	d.58.7.1 (A:51-138) Polypyrimidine tract-binding p	0.002
d2cqia1	90	d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sa	0.002
d1wg5a_	104	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	0.002
d2cqca1	83	d.58.7.1 (A:109-191) Arginine/serine-rich splicing	0.002
d2f9da1	114	d.58.7.1 (A:12-125) Pre-mRNA branch site protein p	0.002

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.1 bits (101), Expect = 2e-07
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 23 QKSDFKPSRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
          QK   +  RV+HI +    +    +++ L  PFG ++N L+L   N+  + + 
Sbjct: 1  QKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMA 53

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.0 bits (90), Expect = 1e-05
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 21 DRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
             K     S V+H+R +   V EA+++     FG +  V+++  K Q L+  E
Sbjct: 8  SHHKVS--VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFE 59

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN 59
          F PS  +H+ NIP  V+E ++  L    G V  
Sbjct: 7  FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK 39

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (75), Expect = 0.001
 Identities = 8/33 (24%), Positives = 19/33 (57%)

Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV 60
          +P++V++++N+   VTE +++ L   F      
Sbjct: 16 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGP 48

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (75), Expect = 0.002
 Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 2/34 (5%)

Query: 21 DRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPF 54
          D+      PSRV+HIR +P EVTE E+I LG+PF
Sbjct: 1  DKMDG--APSRVLHIRKLPGEVTETEVIALGLPF 32

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (75), Expect = 0.002
 Identities = 9/44 (20%), Positives = 18/44 (40%)

Query: 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
           D    R +++ N+  +VTE  I+ L    G   +  ++     
Sbjct: 3  EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS 46

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (75), Expect = 0.002
 Identities = 7/38 (18%), Positives = 13/38 (34%)

Query: 23 QKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV 60
             D      + +R +P   ++ EI+        V N 
Sbjct: 8  NSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 45

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.4 bits (73), Expect = 0.002
 Identities = 6/39 (15%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 21 DRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN 59
          +R   D  P+  + +  +    TE ++  +   +G + +
Sbjct: 2  NRANPD--PNCCLGVFGLSLYTTERDLREVFSKYGPIAD 38

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (75), Expect = 0.002
 Identities = 8/32 (25%), Positives = 20/32 (62%)

Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN 59
          + +R+++IRN+P ++T  E+  +   +G +  
Sbjct: 5  EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	99.92
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	99.9
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.9
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.86
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	99.86
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	99.85
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.83
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	99.83
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	99.82
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	99.82
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.82
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	99.81
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	99.81
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.81
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.81
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.8
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	99.8
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.8
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.8
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.8
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.8
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.79
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.79
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	99.79
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.79
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.79
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.79
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.79
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	99.79
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.79
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	99.79
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.79
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.78
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.78
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	99.77
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.77
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	99.77
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	99.77
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.77
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.77
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.76
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.76
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.76
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.76
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.76
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.75
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.75
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.75
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.74
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.74
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.74
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.74
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.74
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.74
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	99.74
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.74
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.73
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.73
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	99.72
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.71
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.71
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.71
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.7
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.7
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	99.7
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	99.7
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	99.7
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	99.7
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.69
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.69
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.69
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	99.69
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	99.68
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.68
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.67
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	99.67
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.67
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	99.66
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.64
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.59
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.56
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.53
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	99.49
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.45
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	99.45
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.41
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	99.33
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	97.45
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	97.2
d1uw4a_	91	RNA processing protein UPF3x, RRM domain {Human (H	95.53
d1whva_	100	Poly(A)-specific ribonuclease PARN {Mouse (Mus mus	93.07

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.7e-25  Score=145.98  Aligned_cols=83  Identities=41%  Similarity=0.578  Sum_probs=77.9

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      .+||++|||+|||+++|+++|.++|++||.|.++.+.+++++|||||++.++|.+|+.....++..++||+|.|.||+++
T Consensus         5 ~~Ps~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v~~sk~~   84 (88)
T d2cq1a1           5 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK   84 (88)
T ss_dssp             SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhcccccccccccccceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEEEECCCC
Confidence            38999999999999999999999999999999999999999999999999999999876667899999999999999987


Q ss_pred             chH
Q psy9171         107 NRQ  109 (118)
Q Consensus       107 ~~~  109 (118)
                      .++
T Consensus        85 ~lk   87 (88)
T d2cq1a1          85 ELK   87 (88)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            653

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=3.1e-24  Score=145.15  Aligned_cols=83  Identities=19%  Similarity=0.193  Sum_probs=77.5

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      ...+||++|||+|||+++||+||.++|++||.|.++.+.+.|++|||||++.++|..|+..+..+++.++|++|+|.||+
T Consensus        10 ~~~~ps~~l~v~nlp~~~te~~l~~~F~~fG~I~~~~~~~~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v~~s~   89 (104)
T d1wexa_          10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST   89 (104)
T ss_dssp             CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred             CcCCCCCEEEEeCCCCCCCHHHHHHhhhhcccceEEEEEecceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEEEEcC
Confidence            45589999999999999999999999999999999999999999999999999999999876667999999999999998


Q ss_pred             ccc
Q psy9171         105 YRN  107 (118)
Q Consensus       105 ~~~  107 (118)
                      ++.
T Consensus        90 ~~~   92 (104)
T d1wexa_          90 SKR   92 (104)
T ss_dssp             SSS
T ss_pred             CCc
Confidence            754

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4.1e-24  Score=141.74  Aligned_cols=79  Identities=20%  Similarity=0.233  Sum_probs=74.7

Q ss_pred             CCCCcEEEeCCCCCc-ccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          27 FKPSRVIHIRNIPNE-VTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~-vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      ..|||||||+|||.. +|++||.+||++||.|.++.+++++++|||+|++.++|..|+..+..+++.++||+|.|.||+.
T Consensus         5 ~~~sr~v~v~nl~~~~~t~~eL~~lF~~fG~I~~i~i~~~k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~V~~s~~   84 (89)
T d1x4da1           5 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK   84 (89)
T ss_dssp             CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred             CCCCcEEEEECCCCCcCCHHHHHHHHHhhCCeEEEEeeccceEEEEEEcchhhHHHHHHHHhhCCCccCCceEEEEECCC
Confidence            479999999999985 8999999999999999999999999999999999999999998777789999999999999974

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=5.5e-23  Score=138.37  Aligned_cols=78  Identities=21%  Similarity=0.422  Sum_probs=73.6

Q ss_pred             CCCcEEEeCCCCCc-ccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          28 KPSRVIHIRNIPNE-VTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        28 ~PS~vL~V~NLP~~-vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      .|+++|||+|||++ +|+++|.++|++||.|.++.++++||+|||+|++.++|..|+.++..+++.+.||+|.|.||+.
T Consensus        16 ~~~~~l~v~nLp~~~~te~~l~~~F~~fG~V~~v~~~~~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s~~   94 (99)
T d1x4fa1          16 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK   94 (99)
T ss_dssp             CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred             CCCCEEEEeCCcCCccCHHHHHhhhccccceeEEEEeecCCcEEEEecchHHHHHHHHHHhcCCceECCEEEEEEEcCC
Confidence            67899999999985 8999999999999999999999999999999999999999998777889999999999999953

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.4e-22  Score=131.50  Aligned_cols=80  Identities=19%  Similarity=0.191  Sum_probs=71.9

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec--cCceEEEeecchhhhhcccccccccceee-CCeeeEEE
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK--GKNQLLLHLEAEIIHLGIPFGRVTNVLVL-KGKNQVSL  101 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~--~kgqAFVEm~~~e~A~~ai~~~~~n~~~i-~Gr~v~V~  101 (118)
                      +..|||++|||+|||+++|+++|.++|++||.|..+.+..  ++++|||||++.++|..|+..  +|+..+ .||+|.|.
T Consensus         5 ~~~pPs~tL~V~NLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~--l~~~~i~~g~~l~v~   82 (88)
T d2adca2           5 NIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALID--LHNHDLGENHHLRVS   82 (88)
T ss_dssp             TCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHH--HTTCBSSSSCBCEEE
T ss_pred             CCCCCCCEEEEECCCCCCCHHHHHHHhhccCCEEEEEEeeecccceeEEEECCHHHHHHHHHh--ccCCEecCCCEEEEE
Confidence            5569999999999999999999999999999999888774  478999999999999999854  778777 69999999


Q ss_pred             ecccc
Q psy9171         102 ISGYR  106 (118)
Q Consensus       102 ~S~~~  106 (118)
                      ||+.+
T Consensus        83 ~sk~~   87 (88)
T d2adca2          83 FSKST   87 (88)
T ss_dssp             ECSSC
T ss_pred             eCCCC
Confidence            99864

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.85  E-value=6.9e-22  Score=128.45  Aligned_cols=76  Identities=12%  Similarity=0.166  Sum_probs=69.8

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceee-CCeeeEEEecc
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVL-KGKNQVSLISG  104 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i-~Gr~v~V~~S~  104 (118)
                      .|||++|||+|||+++|+++|.++|++||.|.++.++++ +|+|||||.+.++|..|+..  +|+..+ .|++|.|.||+
T Consensus         5 ~pP~~tl~V~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~~~~~i~v~~ak   82 (83)
T d2b0ga1           5 QPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEA--LQGFKITPTHAMKITFAK   82 (83)
T ss_dssp             CSCCSEEEEESCCTTCCHHHHHHHHTTSTTEEEEEECTTTCSCEEEEESSHHHHHHHHHH--HTTCBSSTTCBCEEEECC
T ss_pred             CCCCCEEEEECCCCCCCHHHHHhhhccCccEEEeeeecccceeEEEecCCHHHHHHHHHH--hCCcEeCCCcEEEEEEec
Confidence            499999999999999999999999999999999999874 68999999999999999864  777777 57999999997

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.2e-21  Score=128.42  Aligned_cols=77  Identities=12%  Similarity=0.112  Sum_probs=72.6

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      +++.+|||+|||+++||++|.++|++||.|.++.+.++||+|||+|++.++|..|+..  +|+..+.|++|+|.||+.+
T Consensus        16 ~~~~~l~v~nL~~~~te~~L~~~F~~fG~i~~v~i~~~kg~afV~f~~~~~A~~Ai~~--l~~~~i~g~~l~v~~ak~~   92 (96)
T d1x4ga1          16 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS--VNGTTIEGHVVKCYWGKES   92 (96)
T ss_dssp             SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH--HTTCEETTEECEEECCCCC
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHHhCCceEEEEEecceEEEEEECCHHHHHHHHHH--hCCCEECCEEEEEEEcCCC
Confidence            5677899999999999999999999999999999999999999999999999999864  8899999999999999764

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.8e-21  Score=130.79  Aligned_cols=78  Identities=23%  Similarity=0.158  Sum_probs=70.8

Q ss_pred             CcEEEeCCCCC-cccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccccc
Q psy9171          30 SRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRN  107 (118)
Q Consensus        30 S~vL~V~NLP~-~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~~  107 (118)
                      |+||||+|||+ .+||++|.++|++||.|.++.++++ ||+|||+|++.++|.+|+..  +|+..+.||+|.|.||+.+.
T Consensus         2 ~~~l~V~nL~p~~~te~~L~~~F~~fG~I~~v~i~~~~kg~afV~f~~~~~A~~ai~~--lng~~l~g~~l~v~~s~~~~   79 (109)
T d2adca1           2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSH--LNGHKLHGKPIRITLSKHQN   79 (109)
T ss_dssp             CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHH--HTTCBCSSSBCEEECCSCCC
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHhhccccceEEEEecccceEEEEECCHHHHHHHHHH--hCCCEECCEEEEEEECCCCC
Confidence            67999999966 5999999999999999999999875 68999999999999999865  89999999999999998765


Q ss_pred             hH
Q psy9171         108 RQ  109 (118)
Q Consensus       108 ~~  109 (118)
                      ++
T Consensus        80 ~~   81 (109)
T d2adca1          80 VQ   81 (109)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1e-20  Score=126.16  Aligned_cols=78  Identities=12%  Similarity=0.070  Sum_probs=72.2

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCC--eeeEEEecc
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKG--KNQVSLISG  104 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G--r~v~V~~S~  104 (118)
                      .+|+++|||+|||+++|+++|.++|++||.|.++.+.++|++|||+|.+.++|..|+..  +|+..|.|  ++|.|.||+
T Consensus        14 ~~Ps~tl~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~afV~f~~~~~A~~A~~~--l~~~~i~g~~~~l~v~~ak   91 (97)
T d1whya_          14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAK--MRGFPLGGPDRRLRVDFAK   91 (97)
T ss_dssp             CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHH--HTTCBCSSSSCBCEEEECC
T ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhhcccceEeeeccccEEEeccCCHHHHHHHHHH--hCCCEeCCCceEEEEEeCC
Confidence            38999999999999999999999999999999999999999999999999999999865  78888876  589999998


Q ss_pred             cc
Q psy9171         105 YR  106 (118)
Q Consensus       105 ~~  106 (118)
                      ..
T Consensus        92 ~~   93 (97)
T d1whya_          92 SG   93 (97)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=9.2e-21  Score=124.29  Aligned_cols=76  Identities=20%  Similarity=0.272  Sum_probs=71.3

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccccc
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRN  107 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~~  107 (118)
                      ...|||+|||++++++||.++|++||.|.++.+.++|++|||+|++.++|..|+..  +|+..+.|++|.|.+|.+..
T Consensus         8 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~i~~~~~k~~afV~f~~~~~A~~A~~~--l~g~~i~g~~l~V~~A~~~~   83 (86)
T d2cpja1           8 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVE--LDNMPLRGKQLRVRFACHSA   83 (86)
T ss_dssp             TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHH--HTTCCBTTBCCEEEESSCCS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhCCceEeeeecccceEEEEECCHHHHHHHHHH--hCCCEECCEEEEEEECCCcC
Confidence            34699999999999999999999999999999999999999999999999999864  89999999999999998854

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.4e-20  Score=123.81  Aligned_cols=79  Identities=14%  Similarity=0.079  Sum_probs=72.0

Q ss_pred             CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      ..++++|||+|||+++||++|.++|++||.|.++.+..    ++++|||+|++.++|..|+..  +|+..+.|++|.|.|
T Consensus         5 ~~~~~tl~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~~afV~f~~~~~A~~A~~~--l~~~~~~g~~i~v~~   82 (90)
T d2cqia1           5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAA--MNGRKILGKEVKVNW   82 (90)
T ss_dssp             SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHH--HTTEEETTEEEEEEE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCceeeeeecccCccceeeEEEECCHHHHHHHHHH--cCCCEECCEEEEEEE
Confidence            36788999999999999999999999999999999974    478999999999999999854  789999999999999


Q ss_pred             ccccc
Q psy9171         103 SGYRN  107 (118)
Q Consensus       103 S~~~~  107 (118)
                      |+..+
T Consensus        83 a~~~~   87 (90)
T d2cqia1          83 ATTPS   87 (90)
T ss_dssp             CCCTT
T ss_pred             cCCCC
Confidence            97654

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.5e-20  Score=122.37  Aligned_cols=80  Identities=14%  Similarity=0.037  Sum_probs=73.5

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRN  107 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~~  107 (118)
                      .++++|||+|||+++|++||.++|++||.|..+.+-+.||+|||+|.+.++|..|+..  +|+..+.||+|.|.||+-..
T Consensus         6 ~~~k~l~V~nLp~~~te~~l~~~F~~~g~i~~~~~~~~rg~afV~f~~~~~A~~Ai~~--l~~~~i~g~~i~V~~akP~~   83 (86)
T d2cpda1           6 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKA--LNGKVLDGSPIEVTLAKPVD   83 (86)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHH--HSSEEETTEEEEEECCCCCC
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHhhcccceeeeEEEccccEEEEEEeCCHHHHHHHHHH--cCCCEECCEEEEEEeccCCC
Confidence            4678999999999999999999999999999888888899999999999999999864  89999999999999998765


Q ss_pred             hH
Q psy9171         108 RQ  109 (118)
Q Consensus       108 ~~  109 (118)
                      ++
T Consensus        84 ~~   85 (86)
T d2cpda1          84 KD   85 (86)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.3e-21  Score=129.19  Aligned_cols=90  Identities=17%  Similarity=0.151  Sum_probs=79.3

Q ss_pred             eeeeccCCCCCCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccc
Q psy9171          15 VVQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVT   88 (118)
Q Consensus        15 ~~~~~~~~~~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~   88 (118)
                      +|+.+...+++...||++|||+|||.++|+++|.++|++||.|.++.+..      .+|+|||+|.+.++|..|+..  +
T Consensus         3 ~~~~p~~~~~~~~~ps~tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~--l   80 (102)
T d2cpxa1           3 IRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL--V   80 (102)
T ss_dssp             SCCCSCCCCCCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHH--S
T ss_pred             hhhCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhhccceeeEEeecccccccccccceEEeccHHHHHHHHHH--h
Confidence            45666666667778999999999999999999999999999998887763      379999999999999999864  8


Q ss_pred             cceeeCCeeeEEEecccc
Q psy9171          89 NVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        89 n~~~i~Gr~v~V~~S~~~  106 (118)
                      |+..+.||+|.|.||+.+
T Consensus        81 ~g~~~~g~~l~V~~ak~k   98 (102)
T d2cpxa1          81 NGYKLYGKILVIEFGKNK   98 (102)
T ss_dssp             TTCBCSSCBCEEEECCCC
T ss_pred             CCCEECCEEEEEEeCCCc
Confidence            899999999999999875

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=9.4e-21  Score=124.40  Aligned_cols=78  Identities=17%  Similarity=0.172  Sum_probs=70.8

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      ..+++|||+|||+++|+++|.++|++||.|.++.++.+      ||+|||+|.+.++|..|+..  +|+..+.|++|.|.
T Consensus         3 ~~~~tlfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~--l~~~~i~g~~l~v~   80 (89)
T d2cqba1           3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN--MNESELFGRTIRVN   80 (89)
T ss_dssp             CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHH--HTTEEETTEEEEEE
T ss_pred             CCCcEEEEeCCCCcCCHHHHHHHHhhCCeEEecccccccccccccceeEEEECCHHHHHHHHHH--cCCCEECCEEEEEE
Confidence            45689999999999999999999999999999999742      78999999999999999864  78999999999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      +|+.+.
T Consensus        81 ~a~p~~   86 (89)
T d2cqba1          81 LAKPMR   86 (89)
T ss_dssp             ECCCCC
T ss_pred             EeCCCC
Confidence            998654

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.8e-20  Score=120.35  Aligned_cols=71  Identities=13%  Similarity=0.043  Sum_probs=65.9

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      +|||+|||+++||+||.++|++||.|.++.++.+      +|+|||+|.+.++|..|+..  +|+..+.||+|.|.||+
T Consensus         4 ~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~--l~g~~~~g~~l~v~~Ak   80 (82)
T d1fxla1           4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT--LNGLRLQTKTIKVSYAR   80 (82)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEEEECC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCcccccceeeccCCCceeeEEEEECCHHHHHHHHHH--hCCCEECCEEEEEEEee
Confidence            4999999999999999999999999999999742      68999999999999999854  88999999999999996

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.9e-20  Score=125.10  Aligned_cols=81  Identities=15%  Similarity=0.206  Sum_probs=73.1

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ   98 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v   98 (118)
                      ...||+..|||+|||+++|++||.++|++||.|.++.++.+      ||+|||+|.+.++|..|+..  +|+..+.||+|
T Consensus        13 ~~~p~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~--lng~~~~g~~i   90 (102)
T d2cpza1          13 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS--MNGFQIGMKRL   90 (102)
T ss_dssp             CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH--HTTCEETTEEC
T ss_pred             CCCCCCCEEEEeCCCCCCCHHHHHHHHHhhccccccceeeecccCCCccceEEEeCCHHHHHHHHHH--hCCCEECCEEE
Confidence            33488899999999999999999999999999999998742      68999999999999999854  88999999999


Q ss_pred             EEEeccccc
Q psy9171          99 VSLISGYRN  107 (118)
Q Consensus        99 ~V~~S~~~~  107 (118)
                      +|.+|+.++
T Consensus        91 ~V~~a~~k~   99 (102)
T d2cpza1          91 KVQLKRSKN   99 (102)
T ss_dssp             EEECCCCSC
T ss_pred             EEEEeCCCC
Confidence            999998765

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.4e-20  Score=125.21  Aligned_cols=76  Identities=16%  Similarity=0.150  Sum_probs=70.4

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc---CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG---KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~---kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      ++|++|||+|||+++|+++|.++|++||.|.++++..+   ||+|||+|.+.++|..|+..  +|+..|.||+|.|.++.
T Consensus         5 ~~~r~l~V~nLp~~~te~~l~~~F~~~G~v~~i~~~~~~~~kG~afV~f~~~~~A~~Ai~~--l~g~~~~gr~l~V~~a~   82 (114)
T d2f9da1           5 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDH--LSGFNVCNRYLVVLYYN   82 (114)
T ss_dssp             TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTEEEEEESSHHHHHHHHHH--HTTCEETTEECEEEECC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhhcCCeEeecccccCCcCCeEEEEECCHHHHHHHHHH--hCCCEECCEEEEEEEcC
Confidence            56899999999999999999999999999999999853   79999999999999999865  89999999999999985


Q ss_pred             c
Q psy9171         105 Y  105 (118)
Q Consensus       105 ~  105 (118)
                      .
T Consensus        83 ~   83 (114)
T d2f9da1          83 A   83 (114)
T ss_dssp             H
T ss_pred             C
Confidence            4

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.80  E-value=2.4e-20  Score=119.97  Aligned_cols=73  Identities=11%  Similarity=0.164  Sum_probs=67.2

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      +.+|||+|||+++|+++|.++|++||.|.++.+..+      ||+|||+|.+.++|..|+..  +|+..+.||+|.|.||
T Consensus         2 ~t~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~--lng~~~~g~~l~v~~a   79 (82)
T d1b7fa1           2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV--LNGITVRNKRLKVSYA   79 (82)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH--HTTCEETTEECEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeecccCCccccceEEECCHHHHHHHHHH--hCCCEECCEEEEEEEc
Confidence            357999999999999999999999999999998742      78999999999999999865  8899999999999999


Q ss_pred             c
Q psy9171         104 G  104 (118)
Q Consensus       104 ~  104 (118)
                      +
T Consensus        80 ~   80 (82)
T d1b7fa1          80 R   80 (82)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=8.8e-21  Score=127.55  Aligned_cols=77  Identities=16%  Similarity=0.074  Sum_probs=71.4

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      ..+.+|||+|||+++|+++|.++|++||.|..+.+.+.|++|||+|.+.++|..|+..  +|+..+.||+|+|.|+...
T Consensus         8 r~~~~l~V~nLp~~~t~~~L~~~F~~fG~I~~v~l~~~kg~afV~f~~~~~A~~A~~~--lng~~~~gr~l~v~~a~~~   84 (111)
T d1whxa_           8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRH--LAYSKFHHVPLYLEWAPIG   84 (111)
T ss_dssp             EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHH--HTTCBSSSSBCEEEEEETT
T ss_pred             CCCCEEEEECCCCCCCHHHHHhhhhccCCccEEEeeccCceEEEEEcCHHHHHHHHHH--HcCCccCCCeEEEEECCCC
Confidence            4567899999999999999999999999999999988899999999999999999854  8999999999999998654

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.1e-19  Score=120.16  Aligned_cols=78  Identities=15%  Similarity=0.172  Sum_probs=71.1

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc----CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      .+.+.|||+|||+++|+++|.++|++||.|.++.++.+    ||+|||+|++.++|..|+..  +|+..+.||+|.|.+|
T Consensus         9 ~~~~~l~v~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~kg~afV~f~~~~~a~~Ai~~--l~~~~~~g~~l~V~~A   86 (93)
T d2cq3a1           9 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK--LHGTVVEGRKIEVNNA   86 (93)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHH--HTTCEETTEECEEEEC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhhcceeeeccccccccCCcceeEEEECCHHHHHHHHHH--cCCCEECCEEEEEEec
Confidence            45667999999999999999999999999999999853    78999999999999999865  8899999999999999


Q ss_pred             cccc
Q psy9171         104 GYRN  107 (118)
Q Consensus       104 ~~~~  107 (118)
                      +.+-
T Consensus        87 ~~r~   90 (93)
T d2cq3a1          87 TARV   90 (93)
T ss_dssp             CSSC
T ss_pred             CcCC
Confidence            8753

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.6e-20  Score=122.78  Aligned_cols=79  Identities=15%  Similarity=0.074  Sum_probs=72.1

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      +++.+|||+|||+++|++||.++|++||.|.++.++.+      ||+|||+|.+.++|..|+..  +|+..+.||+|+|.
T Consensus         7 ~~~~tlfV~nLp~~~t~~~l~~~F~~~G~v~~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V~   84 (93)
T d1x5ua1           7 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI--MDMIKLYGKPIRVN   84 (93)
T ss_dssp             CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH--SSSCBCSSCBCEEE
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHHhCCccccceeecccccccccceEEEECCHHHHHHHHHH--cCCCEECCEEEEEE
Confidence            56789999999999999999999999999999998742      68999999999999999854  88999999999999


Q ss_pred             eccccch
Q psy9171         102 ISGYRNR  108 (118)
Q Consensus       102 ~S~~~~~  108 (118)
                      +|+.+++
T Consensus        85 ~A~~~~~   91 (93)
T d1x5ua1          85 KASAHNK   91 (93)
T ss_dssp             ETTTTSC
T ss_pred             EcCCCCC
Confidence            9988664

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.4e-19  Score=118.65  Aligned_cols=76  Identities=16%  Similarity=0.136  Sum_probs=69.6

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc----CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      ...|||+|||+++|+++|.++|++||.|.++.++.+    ||+|||+|++.++|..|+..  +|+..+.||+|.|.+|+.
T Consensus         8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~kg~afV~f~~~~~A~~Ai~~--l~g~~~~g~~i~V~~a~~   85 (89)
T d1cvja2           8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK--MNGMLLNDRKVFVGRFKS   85 (89)
T ss_dssp             TTEEEEESCCSSCCHHHHHHHHHTTSCEEEEEECCBTTBCCSCEEEEESCHHHHHHHTTS--SSEEEETTEEEEEEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEeecCCCcceeEEEECCHHHHHHHHHH--cCCCEECCEEEEEEECCC
Confidence            347999999999999999999999999999999863    78999999999999999864  899999999999999986


Q ss_pred             cc
Q psy9171         106 RN  107 (118)
Q Consensus       106 ~~  107 (118)
                      +.
T Consensus        86 ~~   87 (89)
T d1cvja2          86 RK   87 (89)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=5.1e-20  Score=120.78  Aligned_cols=77  Identities=17%  Similarity=0.132  Sum_probs=69.3

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      ..+.+|||+|||+++|+++|.++|++||.|.++.++.+      ||+|||+|.+.++|..|+..  +|+..+.||+|.|+
T Consensus         5 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~--lng~~l~g~~l~V~   82 (88)
T d1rk8a_           5 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA--LNGAEIMGQTIQVD   82 (88)
T ss_dssp             C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCcccccccccccccccccceeEEECCHHHHHHHHHH--cCCCEECCEEEEEE
Confidence            45679999999999999999999999999999998753      67899999999999999854  88999999999999


Q ss_pred             ecccc
Q psy9171         102 ISGYR  106 (118)
Q Consensus       102 ~S~~~  106 (118)
                      ||..+
T Consensus        83 ~a~~k   87 (88)
T d1rk8a_          83 WCFVK   87 (88)
T ss_dssp             ESEEC
T ss_pred             EecCC
Confidence            99753

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=5.1e-20  Score=121.15  Aligned_cols=77  Identities=14%  Similarity=0.131  Sum_probs=68.4

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRN  107 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~~  107 (118)
                      .+|++|||+|||+++|++||.++|++|| +..+.+-+.|++|||+|++.++|..|+..  +|+..+.||+|.|.||+.+.
T Consensus         3 s~s~~i~V~nLp~~~t~~~l~~lF~~~G-~~~~~~~~~kg~afV~f~~~~~A~~Ai~~--ln~~~~~G~~l~V~~a~~~~   79 (88)
T d1wg1a_           3 SGSSGILVKNLPQDSNCQEVHDLLKDYD-LKYCYVDRNKRTAFVTLLNGEQAQNAIQM--FHQYSFRGKDLIVQLQPTDA   79 (88)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHTCSSC-CCCEEEEGGGTEEEECCSCHHHHHHHHHH--HTTEEETTEEEEEEECCCCC
T ss_pred             CCCCEEEEeCCCCccChHHHHHHHHhcC-ceeeeeeccCCceEEEECCHHHHHHHHHH--hCCCEECCEEEEEEEcCCCC
Confidence            4677899999999999999999999999 34455556799999999999999999854  89999999999999998754

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.2e-20  Score=118.68  Aligned_cols=71  Identities=13%  Similarity=0.134  Sum_probs=65.5

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      +|+++|||+|||+++||++|.++|++||.|.++.++.+      ||+|||+|.+.++|..|+..  +|+..+.||+|.|
T Consensus         7 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~--l~g~~~~gr~i~V   83 (83)
T d2cqca1           7 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER--ANGMELDGRRIRV   83 (83)
T ss_dssp             CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH--HTTEEETTEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCCccccccccccccccccceEEEECCHHHHHHHHHH--cCCCEECCEEeEC
Confidence            78999999999999999999999999999999998742      67999999999999999854  8899999999986

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9e-20  Score=120.85  Aligned_cols=77  Identities=13%  Similarity=-0.049  Sum_probs=70.2

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .+|.+|||+|||+++||++|.++|++||.|.++.++.+      ||+|||+|.+.++|..|+..  +|+..+.||+|.|.
T Consensus         5 ~~s~tlfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~--l~g~~~~gr~i~V~   82 (93)
T d1h2vz_           5 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY--INGTRLDDRIIRTD   82 (93)
T ss_dssp             TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--TTTSEETTEECEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHCCcceeccccccccccccceEEEEECCHHHHHHHHHH--hCCCEECCEEEEEE
Confidence            56779999999999999999999999999999999753      57999999999999999864  88999999999999


Q ss_pred             ecccc
Q psy9171         102 ISGYR  106 (118)
Q Consensus       102 ~S~~~  106 (118)
                      ||...
T Consensus        83 ~a~~~   87 (93)
T d1h2vz_          83 WDAGF   87 (93)
T ss_dssp             EESCC
T ss_pred             EcCCC
Confidence            98653

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=3.4e-20  Score=123.14  Aligned_cols=79  Identities=19%  Similarity=0.140  Sum_probs=70.8

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-------CceEEEeecchhhhhcccccccc-cceeeCCeeeE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-------KNQLLLHLEAEIIHLGIPFGRVT-NVLVLKGKNQV   99 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-------kgqAFVEm~~~e~A~~ai~~~~~-n~~~i~Gr~v~   99 (118)
                      .++..|||+|||+++||++|.++|++||.|.++.++++       ||+|||+|.+.++|..|+..  + |+..+.||+|.
T Consensus         6 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~--l~~~~~~~Gr~l~   83 (94)
T d2cpha1           6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA--LCHSTHLYGRRLV   83 (94)
T ss_dssp             SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHH--HHTCCBSSSCBCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHH--ccCCcEECCEEEE
Confidence            56778999999999999999999999999999998642       68999999999999999864  5 78999999999


Q ss_pred             EEeccccch
Q psy9171         100 SLISGYRNR  108 (118)
Q Consensus       100 V~~S~~~~~  108 (118)
                      |.||..+..
T Consensus        84 V~~A~~~~~   92 (94)
T d2cpha1          84 LEWADSEVT   92 (94)
T ss_dssp             EEECCCCCC
T ss_pred             EEEcCCCCC
Confidence            999987644

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8.9e-20  Score=117.55  Aligned_cols=71  Identities=18%  Similarity=0.134  Sum_probs=66.3

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      .|||+|||+++||++|.++|++||.|.+++++++      +|+|||+|.+.++|..|+..  +|+..+.||+|.|.||+
T Consensus         2 slfV~nL~~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~--l~g~~~~gr~i~v~~a~   78 (80)
T d1cvja1           2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT--MNFDVIKGKPVRIMWSQ   78 (80)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHTT--STTCEETTEECEEEECC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCEeEEEEEecccccCCCCceEEEECCHHHHHHHHHH--cCCCEECCEEEEEEEeC
Confidence            4999999999999999999999999999999852      68999999999999999864  88999999999999995

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=5.9e-20  Score=120.97  Aligned_cols=78  Identities=14%  Similarity=0.182  Sum_probs=70.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHH----HhccCCCceeEEEEec---cCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEII----HLGIPFGRVTNVLVLK---GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~----~Lf~~fG~V~~v~l~~---~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      .||++|||+|||+++|++||.    .+|++||.|.++.+.+   .+|+|||+|++.++|..|+..  +|+..+.|++|.|
T Consensus         1 ~P~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~~~~~~~~g~afV~F~~~~~A~~A~~~--~~~~~~~g~~l~v   78 (91)
T d1nu4a_           1 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS--MQGFPFYDKPMRI   78 (91)
T ss_dssp             CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHH--HTTCEETTEECEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHhcccccccceEEeeeccCCCceEEEECCHHHHHHHHHH--hCCCEECCEEEEE
Confidence            389999999999999999985    4689999999998875   389999999999999999854  7899999999999


Q ss_pred             Eeccccc
Q psy9171         101 LISGYRN  107 (118)
Q Consensus       101 ~~S~~~~  107 (118)
                      .||+.++
T Consensus        79 ~~ak~~~   85 (91)
T d1nu4a_          79 QYAKTDS   85 (91)
T ss_dssp             EECSSCC
T ss_pred             EEeCCCc
Confidence            9998754

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-19  Score=119.26  Aligned_cols=78  Identities=13%  Similarity=0.138  Sum_probs=70.9

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++.+|||+|||.++|+++|.++|++||.|.++.++.+      ||+|||+|.+.++|..|+..  +|+..+.||+|.|.
T Consensus         6 ~~~~~i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~--l~g~~~~g~~i~v~   83 (90)
T d2cq0a1           6 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG--VSGFGYDHLILNVE   83 (90)
T ss_dssp             SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH--TTTCEETTEECEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHhcccccccccccccccccccceeEEECCHHHHHHHHHH--hCCCEECCEEEEEE
Confidence            46778999999999999999999999999999999853      67999999999999999865  88999999999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      ||+-++
T Consensus        84 ~akp~~   89 (90)
T d2cq0a1          84 WAKPST   89 (90)
T ss_dssp             ESSCCC
T ss_pred             eeeCCC
Confidence            998653

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.8e-20  Score=125.28  Aligned_cols=78  Identities=15%  Similarity=0.102  Sum_probs=68.5

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec--cCceEEEeecchhhhhcccccccccceee--CCeeeEEEec
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK--GKNQLLLHLEAEIIHLGIPFGRVTNVLVL--KGKNQVSLIS  103 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~--~kgqAFVEm~~~e~A~~ai~~~~~n~~~i--~Gr~v~V~~S  103 (118)
                      .|...|||+|||+++||++|.++|++||.|.++.+..  .+|+|||||++.++|..|+..  +|+..|  +|++|.+.||
T Consensus         5 s~~~~v~V~NL~~~vte~~L~~~F~~~G~i~~~~i~~~~~~g~aFV~f~~~e~A~~Ai~~--ln~~~l~~~~~~l~v~~s   82 (108)
T d2adba1           5 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS--LDGQNIYNACCTLRIDFS   82 (108)
T ss_dssp             CCEEEEESCSCCSTTHHHHHHHHHTTTSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH--HHSCCSSTTCCCCEEEEC
T ss_pred             CCeEEEEEeCcCCCCCHHHHHHHHccCCcEEEEEEEeeCCCCeEEEEECCHHHHHHHHHH--HCCCEeccCCcEEEEEec
Confidence            4555578999999999999999999999999999985  468999999999999999865  777766  7899999999


Q ss_pred             cccc
Q psy9171         104 GYRN  107 (118)
Q Consensus       104 ~~~~  107 (118)
                      +.+.
T Consensus        83 ~~~~   86 (108)
T d2adba1          83 KLTS   86 (108)
T ss_dssp             SSCS
T ss_pred             CCcc
Confidence            8764

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.4e-19  Score=118.67  Aligned_cols=75  Identities=16%  Similarity=0.176  Sum_probs=68.4

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-cCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      .+|+.|||+|||+++||+||.++|++||.|.++.+.. .+++|||+|++.++|.+|+.    ++..|+||+|.|.+|+.+
T Consensus         3 ~~s~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~gfafV~f~~~~~a~~a~~----~~~~i~g~~l~v~~a~~k   78 (88)
T d1wf0a_           3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG----EDLIIKGISVHISNAEPK   78 (88)
T ss_dssp             SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT----CEEEETTEEEEEECCCCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEeeccCceEEEEECCHHHHHHHHh----CCCEECCEEeEEEeCCCC
Confidence            5788999999999999999999999999999998875 47999999999999999973    688999999999999654

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.7e-19  Score=120.12  Aligned_cols=78  Identities=14%  Similarity=0.124  Sum_probs=70.8

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++..|||+|||+++|++||.++|++||.|.++.++.+      ||+|||+|++.++|..|+..  +|+..+.||+|.|.
T Consensus         6 ~~~~~lfV~nL~~~~t~~~l~~~F~~~g~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~--l~g~~~~gr~i~V~   83 (99)
T d1whwa_           6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE--VDGQVFQGRMLHVL   83 (99)
T ss_dssp             CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH--TTTEESSSCEEEEE
T ss_pred             CCCCEEEEECCCCcCCHHHHHHHHHhcCCceeeeecccccccccCcceEEEECCHHHHHHHHHH--cCCCEECCEEEEEE
Confidence            55667999999999999999999999999999999743      68999999999999999854  89999999999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      +|+.+.
T Consensus        84 ~a~~~~   89 (99)
T d1whwa_          84 PSTIKK   89 (99)
T ss_dssp             ECCCCS
T ss_pred             ECCCCC
Confidence            998753

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.1e-19  Score=117.84  Aligned_cols=73  Identities=12%  Similarity=0.030  Sum_probs=66.5

Q ss_pred             EEeCCCCCcccHHHHHHhccCCCceeEEEEecc---------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG---------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~---------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      |||+|||+++|+++|.++|++||.|.++.+.++         ||+|||+|++.++|..|+..  +|+..++||+|.|.+|
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~--~~~~~~~g~~i~V~~a   78 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ--LQGHTVDGHKLEVRIS   78 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH--STTCEETTEECEEECS
T ss_pred             CEEcCCCCCCCHHHHHHHHHHhCCccccceecccccccccccceEEEEEECCHHHHHHHHHH--hCCCEECCEEEEEEEC
Confidence            799999999999999999999999999999742         67899999999999999854  8899999999999999


Q ss_pred             cccc
Q psy9171         104 GYRN  107 (118)
Q Consensus       104 ~~~~  107 (118)
                      +...
T Consensus        79 ~~~~   82 (85)
T d2cpfa1          79 ERAT   82 (85)
T ss_dssp             SCSS
T ss_pred             CCCC
Confidence            6543

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.6e-19  Score=116.31  Aligned_cols=75  Identities=11%  Similarity=0.010  Sum_probs=69.4

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      ..+++|||+|+|  +||++|.++|++||.|.++.+.+.+++|||+|++.++|..|+..  +|+..+.|++|.|.||+.+
T Consensus         3 ~~~~ti~V~~~~--~te~~L~~~F~~~G~I~~v~~~~~~~~afV~f~~~~~A~~Ai~~--lng~~~~g~~l~V~~a~~~   77 (79)
T d2bz2a1           3 RKGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE--LNGTQVESVQLKVNIARKQ   77 (79)
T ss_dssp             CCCCEEEEECSS--CCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHH--HTTCBCSSCBCEEEECCSS
T ss_pred             CCCCEEEEECCC--CCHHHHHHHHhccCccceeeeccCCCEEEEEEcccHHHHHHHHH--hCCCEECCEEEEEEEecCC
Confidence            356799999996  89999999999999999999999999999999999999999865  8999999999999999753

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=3.3e-19  Score=117.33  Aligned_cols=79  Identities=16%  Similarity=0.140  Sum_probs=69.8

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhccccccc----ccceeeCCee
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRV----TNVLVLKGKN   97 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~----~n~~~i~Gr~   97 (118)
                      ..+++|||+|||+++||++|.++|++||+|..+.++.+      +|+|||+|.+.++|..|+....    .++..+.||+
T Consensus         6 ~~~~tlfV~nLp~~~te~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~   85 (98)
T d1x4ha1           6 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ   85 (98)
T ss_dssp             CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred             CCCCEEEEcCCCCcCCHHHHHHHHhccccceeeeeccccccccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEE
Confidence            56889999999999999999999999999999998742      7899999999999999986422    3478999999


Q ss_pred             eEEEecccc
Q psy9171          98 QVSLISGYR  106 (118)
Q Consensus        98 v~V~~S~~~  106 (118)
                      |.|.+|+.+
T Consensus        86 l~v~~a~~k   94 (98)
T d1x4ha1          86 LKVDLAVTR   94 (98)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEECCCC
Confidence            999999764

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.3e-20  Score=118.62  Aligned_cols=73  Identities=15%  Similarity=-0.041  Sum_probs=67.6

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccc-eeeCCeeeEEEecccc
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNV-LVLKGKNQVSLISGYR  106 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~-~~i~Gr~v~V~~S~~~  106 (118)
                      .|||+|||+++||+||.++|++||.|.+..+.+.||+|||+|.+.++|..|+..  +|+ ..+.||+|.|.||..+
T Consensus         3 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~rg~aFV~f~~~~~A~~Ai~~--lng~~~~~G~~i~V~~a~~k   76 (80)
T d2cqha1           3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIET--LSGKVELHGKIMEVDYSVSK   76 (80)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHH--HTTTCEETTEECEEEECCCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCcEEEeEEecccceEEEEECCHHHHHHHHHH--hCCCeEECCEEEEEEEcCCc
Confidence            499999999999999999999999999988888999999999999999999864  776 5799999999999864

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=4.8e-19  Score=113.46  Aligned_cols=72  Identities=18%  Similarity=0.123  Sum_probs=66.1

Q ss_pred             EEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccccc
Q psy9171          33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRN  107 (118)
Q Consensus        33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~~  107 (118)
                      |||+|||+++|++||.++|++|| +......+.||+|||+|++.++|..|+..  +|+..++||+|.|.+|+..+
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~g-~~~~~~~~~~g~afv~f~~~~~A~~Ai~~--ln~~~~~g~~l~V~~a~~d~   72 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINT--FHQSRLRERELSVQLQPTDA   72 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHH--HTTEESSSCEEEEEECCSTT
T ss_pred             CEEeCCCCcCCHHHHHHHHhccc-ccceeecccceeEEEEECCHHHHHHHHHH--hCCccCCCCEEEEEEeCCCC
Confidence            79999999999999999999999 66677777899999999999999999865  89999999999999998754

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.7e-19  Score=116.98  Aligned_cols=77  Identities=12%  Similarity=0.153  Sum_probs=70.2

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec---cCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK---GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~---~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      .++.+|||+|||+++|++||.++|++||.|..+.+..   .|++|||+|++.++|..|+..  +|+..+.||+|.|.||+
T Consensus        12 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~e~a~~Ai~~--l~g~~~~g~~l~V~~a~   89 (95)
T d1x4aa1          12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYG--RDGYDYDGYRLRVEFPR   89 (95)
T ss_dssp             CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHH--HTTCEETTEECEEECCC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhcCCceEEEEecccccccceEEEEECCHHHHHHHHHH--hCCCEECCEEEEEEecc
Confidence            5666899999999999999999999999999999864   479999999999999999854  88999999999999998


Q ss_pred             cc
Q psy9171         105 YR  106 (118)
Q Consensus       105 ~~  106 (118)
                      ..
T Consensus        90 ~~   91 (95)
T d1x4aa1          90 SG   91 (95)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.7e-19  Score=120.90  Aligned_cols=79  Identities=16%  Similarity=0.136  Sum_probs=70.6

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      .++|||+|||+++|+++|.++|++||.|.++.++.+      ||+|||+|.+.++|..|+..  +|+..+.||+|.|.+|
T Consensus         8 ~rtl~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~--l~~~~~~g~~i~V~~a   85 (104)
T d1p1ta_           8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN--LNGREFSGRALRVDNA   85 (104)
T ss_dssp             HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH--SSSBSCSSSCBEEEET
T ss_pred             CCEEEEECCCCcCCHHHHHHhhhccccccccccccccceeccCCceEEEECCHHHHHHHHHH--cCCCEECCEEEEEEEC
Confidence            568999999999999999999999999999999753      57999999999999999854  7899999999999999


Q ss_pred             cccchHH
Q psy9171         104 GYRNRQS  110 (118)
Q Consensus       104 ~~~~~~~  110 (118)
                      ..+...+
T Consensus        86 ~~~~~~~   92 (104)
T d1p1ta_          86 ASEKNKE   92 (104)
T ss_dssp             TCTTHHH
T ss_pred             CCCCCcc
Confidence            8654443

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.2e-19  Score=117.23  Aligned_cols=76  Identities=16%  Similarity=0.174  Sum_probs=69.6

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      .|||+|||+++||++|.++|++||.|.++.++.+      ||+|||+|.+.++|..|+..  +|+..+.||+|.|.+|+.
T Consensus         3 rlfV~nlp~~~te~~l~~~F~~~G~v~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~--l~~~~l~g~~l~V~~A~~   80 (85)
T d2u2fa_           3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG--LNGMQLGDKKLLVQRASV   80 (85)
T ss_dssp             CEEEETCCSSCCSHHHHHHHTSSSCEEEEEEECCCSSSCCCCEEEEEESSSHHHHHHHHT--SSSCCCSSSCCEEEECCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCccceEEeeccccccccceeEEEEECCHHHHHHHHHH--hCCCEECCEEEEEEECCC
Confidence            4999999999999999999999999999999853      79999999999999999864  889999999999999987


Q ss_pred             cchH
Q psy9171         106 RNRQ  109 (118)
Q Consensus       106 ~~~~  109 (118)
                      ..++
T Consensus        81 ~~~~   84 (85)
T d2u2fa_          81 GAKN   84 (85)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            6543

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=2.6e-19  Score=115.03  Aligned_cols=71  Identities=20%  Similarity=0.161  Sum_probs=65.9

Q ss_pred             EEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      |||+|||+++|++||.++|++||.|.++.+..+     +|+|||+|.+.++|..|+..  +|+..+.||+|.|.++++
T Consensus         3 l~V~nLp~~~~~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~--l~g~~l~g~~l~V~~a~S   78 (78)
T d1no8a_           3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ--YNGVPLDGRPMNIQLVTS   78 (78)
T ss_dssp             EEEESCCTTCCHHHHHHHHHHHSCEEEEEESCSSCCCSCCEEEEEESCHHHHHHHHHH--HTTCEETTEECEEEEECC
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeeccccceeEEEEECCHHHHHHHHHH--hCCCEECCEEEEEEEeeC
Confidence            899999999999999999999999999999853     67999999999999999864  789999999999999864

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.76  E-value=3.1e-19  Score=124.88  Aligned_cols=78  Identities=14%  Similarity=0.166  Sum_probs=70.5

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++++|||+|||+++||++|.++|++||.|.++.++.+      ||+|||+|.+.++|..|+..  +|+..|.||+|.|.
T Consensus        40 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~--lng~~~~gr~l~V~  117 (139)
T d1u6fa1          40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG--LNGFNILNKRLKVA  117 (139)
T ss_dssp             TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH--TTTEECSSCEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhhccccccccccccccccccceeeEEECCHHHHHHHHHH--hCCCEECCEEEEEE
Confidence            34578999999999999999999999999999999752      68999999999999999864  89999999999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      +|+.+.
T Consensus       118 ~a~~~~  123 (139)
T d1u6fa1         118 LAASGH  123 (139)
T ss_dssp             ESSCCC
T ss_pred             EcCCCC
Confidence            997654

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=2.6e-19  Score=114.98  Aligned_cols=71  Identities=17%  Similarity=0.119  Sum_probs=65.1

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      +|||+|||+++|+++|.++|++||.|..+.++.      .||+|||+|.+.++|..|+..  +|+..++||+|+|.||+
T Consensus         3 tl~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~--l~g~~~~g~~i~V~~a~   79 (81)
T d2ghpa1           3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK--LNGLKIEGYTLVTKVSN   79 (81)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHH--HTTCEETTEECEEEECC
T ss_pred             EEEEECCCCcCCHHHHHHHHHHhCcEEeeeeecccccccccceeEEEECCHHHHHHHHHH--hCCCEECCEEEEEEEcc
Confidence            899999999999999999999999998887763      278999999999999999854  89999999999999985

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.76  E-value=4.1e-19  Score=117.87  Aligned_cols=85  Identities=13%  Similarity=0.072  Sum_probs=73.1

Q ss_pred             CCCCCCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEe-ccCceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          21 DRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL-KGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        21 ~~~~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~-~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      +.......++++|||+|||+++|++||.++|++||.|..+... +.+++|||+|.+.++|..|+..  +|+..+.||+|.
T Consensus         7 p~~~~~~~~~~~l~V~nL~~~~te~~l~~~F~~~g~v~~~~~~~~~~~~afV~f~~~~~A~~A~~~--l~~~~~~gr~i~   84 (96)
T d1fjca_           7 PCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEE--KQGAEIDGRSVS   84 (96)
T ss_dssp             TTTTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHH--TTEEEETTEEEE
T ss_pred             CCccCcCCCCCEEEEeCCCCCCCHHHHHHHHHhcccceeeeecCccccEEEEEeCCHHHHHHHHHH--cCCCEECCEEEE
Confidence            3333444678999999999999999999999999999877654 3489999999999999999854  789999999999


Q ss_pred             EEeccccc
Q psy9171         100 SLISGYRN  107 (118)
Q Consensus       100 V~~S~~~~  107 (118)
                      |.||..+.
T Consensus        85 V~~a~~k~   92 (96)
T d1fjca_          85 LYYTGEKG   92 (96)
T ss_dssp             EEECSSSC
T ss_pred             EEEeCCCC
Confidence            99998653

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.7e-19  Score=115.43  Aligned_cols=72  Identities=15%  Similarity=0.202  Sum_probs=64.8

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCC--eeeEEE
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKG--KNQVSL  101 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G--r~v~V~  101 (118)
                      +..|||+|||+++||++|.++|++||.|.++.++.+      ||+|||+|.+.++|..|+..  +|+..+.|  ++|.|.
T Consensus         6 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~--lng~~~~G~~~~i~V~   83 (85)
T d1fxla2           6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG--LNGQKPSGATEPITVK   83 (85)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--HTTCCCTTCSSCCEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCccccccccccccccCCCeeEEEEcCHHHHHHHHHH--hCCCEeCCCCEEEEEE
Confidence            457999999999999999999999999999999852      67999999999999999864  88999998  469999


Q ss_pred             ec
Q psy9171         102 IS  103 (118)
Q Consensus       102 ~S  103 (118)
                      ||
T Consensus        84 ~A   85 (85)
T d1fxla2          84 FA   85 (85)
T ss_dssp             EC
T ss_pred             eC
Confidence            86

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.7e-19  Score=119.56  Aligned_cols=74  Identities=12%  Similarity=0.076  Sum_probs=67.9

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      ++++|||+|||+++||++|.++|++||.|.++.++.+      ||+|||+|.+.++|..|+ .  +|+..+.|++|.|.+
T Consensus        17 ~~~tifV~nL~~~~te~~l~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~-~--l~g~~~~G~~l~V~~   93 (101)
T d2cq4a1          17 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-G--LTGQRLLGVPIIVQA   93 (101)
T ss_dssp             HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-H--HTTEEETTEEEEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHcCCCeEEEEEeeecCCCccccceEEEEECCHHHHHHHH-H--HCCCEECCEEEEEEE
Confidence            3679999999999999999999999999999999853      789999999999999997 2  899999999999999


Q ss_pred             ccc
Q psy9171         103 SGY  105 (118)
Q Consensus       103 S~~  105 (118)
                      |+.
T Consensus        94 a~~   96 (101)
T d2cq4a1          94 SQA   96 (101)
T ss_dssp             HHH
T ss_pred             CCC
Confidence            854

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.75  E-value=1.1e-18  Score=113.33  Aligned_cols=73  Identities=10%  Similarity=0.174  Sum_probs=65.8

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCC--eeeEE
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKG--KNQVS  100 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G--r~v~V  100 (118)
                      .+..|||+|||+++||++|.++|++||.|.++.++++      ||+|||+|++.++|..|+..  +|+..+.|  |+|.|
T Consensus         5 ~~t~lfV~nlp~~~te~~l~~~F~~~G~i~~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~--l~g~~~~g~~~~l~V   82 (85)
T d1b7fa2           5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA--LNNVIPEGGSQPLSV   82 (85)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--HTTCCCTTCSSCCEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhCCEeeeeeecccccccCceeEEEEECCHHHHHHHHHH--HCCCEeCCCCeEEEE
Confidence            4557999999999999999999999999999999853      67999999999999999865  78888887  89999


Q ss_pred             Eec
Q psy9171         101 LIS  103 (118)
Q Consensus       101 ~~S  103 (118)
                      .||
T Consensus        83 ~~A   85 (85)
T d1b7fa2          83 RLA   85 (85)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            986

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.8e-19  Score=116.22  Aligned_cols=75  Identities=12%  Similarity=0.145  Sum_probs=67.9

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      ++.|||+|||+++|++||.++|++||.|..+.++.      .+|+|||+|.+.++|..|+..  +|+..+.||+|.|.+|
T Consensus         5 ~~kifV~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~--l~~~~~~g~~l~V~~a   82 (90)
T d1x5sa1           5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA--MNGKSVDGRQIRVDQA   82 (90)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHH--HTTCCTTSCCCEEEEE
T ss_pred             CCEEEEECCCCcCCHHHHHHhhhccccccceeeccccccccccceEEEEECCHHHHHHHHHH--cCCCEECCEEEEEEEc
Confidence            45699999999999999999999999999998874      278999999999999999865  8899999999999998


Q ss_pred             ccc
Q psy9171         104 GYR  106 (118)
Q Consensus       104 ~~~  106 (118)
                      ..+
T Consensus        83 ~~~   85 (90)
T d1x5sa1          83 GKS   85 (90)
T ss_dssp             ECC
T ss_pred             CCC
Confidence            654

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.8e-18  Score=114.50  Aligned_cols=76  Identities=14%  Similarity=0.145  Sum_probs=67.4

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .++..|||+|||+++||++|.++|++||.|.++.++.+      ||+|||+|.+.++|..|+..    .-.+.||+|.+.
T Consensus         6 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~~----~~~l~Gr~i~v~   81 (90)
T d2cqga1           6 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ----RHMIDGRWCDCK   81 (90)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS----CEEETTEEEEEE
T ss_pred             cCCCeEEEECCCCCCCHHHHHHHHHhhcccceeeeccCCCCcccCCEEEEEECCHHHHHHHHhc----CCccCCEEeEEE
Confidence            55678999999999999999999999999999999853      68999999999999999853    337999999999


Q ss_pred             eccccc
Q psy9171         102 ISGYRN  107 (118)
Q Consensus       102 ~S~~~~  107 (118)
                      +|..+.
T Consensus        82 ~a~~k~   87 (90)
T d2cqga1          82 LPNSKQ   87 (90)
T ss_dssp             CCCTTC
T ss_pred             eCCCCC
Confidence            997754

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.3e-18  Score=116.33  Aligned_cols=76  Identities=18%  Similarity=0.097  Sum_probs=66.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-------cCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      .|+.+|||+|||+++||+||.++|++|| +.++.++.       .||+|||+|++.++|.+|+   .+|+..+.||+|+|
T Consensus        13 ~p~~~v~V~nLp~~~te~~l~~~f~~~g-~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~---~~~~~~~~gr~l~V   88 (104)
T d1wi8a_          13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL---SLNEESLGNKRIRV   88 (104)
T ss_dssp             SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH---GGGTCEETTEECEE
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHHhc-cccceeeeeeccCCCcceeeeEEECCHHHHHHHH---HcCCCEECCEEEEE
Confidence            4678999999999999999999999999 66776653       2679999999999998775   37899999999999


Q ss_pred             Eeccccc
Q psy9171         101 LISGYRN  107 (118)
Q Consensus       101 ~~S~~~~  107 (118)
                      .+|..+.
T Consensus        89 ~~a~~~~   95 (104)
T d1wi8a_          89 DVADQAQ   95 (104)
T ss_dssp             EECCCCC
T ss_pred             EECCCCC
Confidence            9997654

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.2e-19  Score=113.10  Aligned_cols=73  Identities=14%  Similarity=0.087  Sum_probs=64.9

Q ss_pred             EEeCCCCCcccHHHHHHhccCCCceeEE-EEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          33 IHIRNIPNEVTEAEIIHLGIPFGRVTNV-LVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v-~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      |||+|||+++||+||.++|++||.|.++ .++++      +|+|||+|++.++|..|+..  +|+..+.||+|.|++|..
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~--~~g~~~~gr~l~v~~a~~   78 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA--MNGQYLCNRPITVSYAFK   78 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHT--TTTCEETTEECEEEESCC
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhCceeeeEEEEeeccccccCceEEEEECCHHHHHHHHHh--CCCcEECCEEEEEEEecC
Confidence            7999999999999999999999999765 45532      68999999999999999864  889999999999999986


Q ss_pred             cc
Q psy9171         106 RN  107 (118)
Q Consensus       106 ~~  107 (118)
                      ++
T Consensus        79 k~   80 (83)
T d1x5ta1          79 KD   80 (83)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1.3e-18  Score=113.47  Aligned_cols=74  Identities=16%  Similarity=0.119  Sum_probs=65.6

Q ss_pred             CCcEEEeCCCCCccc-HHHHHHhccCCCceeEEEEec-------cCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171          29 PSRVIHIRNIPNEVT-EAEIIHLGIPFGRVTNVLVLK-------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS  100 (118)
Q Consensus        29 PS~vL~V~NLP~~vt-e~dL~~Lf~~fG~V~~v~l~~-------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V  100 (118)
                      -+++|||+|||+++| |++|.++|++||.|.++.+..       .||+|||+|.+.++|..|+.   +|+..+.||+|.|
T Consensus         3 e~~~l~V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~---~n~~~~~gr~l~V   79 (86)
T d2ghpa3           3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQ---MNRSLLGNREISV   79 (86)
T ss_dssp             TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGG---GTTEEETTEEEEE
T ss_pred             CCCEEEEECCCCCcccHHHHHHHHHhhhhccceeeecccCCccccceeeeEEECCHHHHHHHHh---cCCCEECCEEEEE
Confidence            367999999999986 566999999999999999853       26799999999999999973   7999999999999


Q ss_pred             Eeccc
Q psy9171         101 LISGY  105 (118)
Q Consensus       101 ~~S~~  105 (118)
                      .+|+.
T Consensus        80 ~~a~~   84 (86)
T d2ghpa3          80 SLADK   84 (86)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            99975

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.7e-18  Score=116.25  Aligned_cols=75  Identities=13%  Similarity=0.123  Sum_probs=67.8

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      +.+.|||+|||+++|++||.++|++||.|..+.+..      .||+|||+|.+.++|.+|+.   +|+..|.||+|.|.+
T Consensus        19 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~---~~~~~l~G~~i~V~~   95 (103)
T d1x4ba1          19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA---ARPHSIDGRVVEPKR   95 (103)
T ss_dssp             HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHT---SCSEEETTEEEEEEC
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHhhCcccceeecccccCCCccCeEEEEECCHHHHHHHHH---hCCCeECCEEEEEEE
Confidence            357899999999999999999999999999999974      27999999999999999974   688899999999999


Q ss_pred             cccc
Q psy9171         103 SGYR  106 (118)
Q Consensus       103 S~~~  106 (118)
                      |..+
T Consensus        96 a~~k   99 (103)
T d1x4ba1          96 AVAR   99 (103)
T ss_dssp             CSSC
T ss_pred             Cccc
Confidence            8753

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.7e-18  Score=116.09  Aligned_cols=75  Identities=12%  Similarity=0.115  Sum_probs=67.3

Q ss_pred             CCCcEEEeCCCCC-cccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171          28 KPSRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR  106 (118)
Q Consensus        28 ~PS~vL~V~NLP~-~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~  106 (118)
                      .++.+|||+|||+ .++++||.++|++||.|.++.+.  ||+|||+|++.++|..|+..  +|+..+.||+|.|.+|+.+
T Consensus        13 ~~~~~lfV~nL~~~~~~~~~L~~~F~~~G~i~~~~i~--rg~aFV~f~~~~~A~~Ai~~--lng~~~~g~~l~V~~a~~~   88 (98)
T d1wf2a_          13 SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH--KGFAFVQYVNERNARAAVAG--EDGRMIAGQVLDINLAAEP   88 (98)
T ss_dssp             SCCCCEEEEEECTTTCCHHHHHHSSTTSSCEEEEEEE--TEEEEEEESSHHHHHHHHHT--TTTCEETTEECEEEETTSC
T ss_pred             CCCcEEEEeCCCcccCCHHHHHHHHhhcCCEEEEEEe--CCeEEEEECCHHHHHHHHHH--cCCCEECCEEEEEEECCCC
Confidence            4456799999974 78899999999999999999984  79999999999999999865  8999999999999999754

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.9e-18  Score=109.40  Aligned_cols=70  Identities=10%  Similarity=0.158  Sum_probs=63.9

Q ss_pred             cEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      |.|||+|||+++|++||.++|++||.|..+.+..+      +|+|||+|++.++|.+|+.   +|+..|.||+|.|..|
T Consensus         3 r~lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~~~~al~---~~~~~l~Gr~i~V~~A   78 (79)
T d1l3ka2           3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI---QKYHTVNGHNCEVRKA   78 (79)
T ss_dssp             SEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH---CSCCEETTEECEEEEC
T ss_pred             CEEEECCCCCcCCHHHHHHHHHHhccccccccccCCCCcccccEEEEEEcCHHHHHHHHH---hCCCEECCEEEEEEEC
Confidence            68999999999999999999999999999998742      6899999999999999963   7899999999999865

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4e-18  Score=111.28  Aligned_cols=73  Identities=16%  Similarity=0.160  Sum_probs=66.6

Q ss_pred             CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      .+++|||+|||+++|+++|.++|++||+|.++.+..+     ||+|||+|++.++|.+|+.   +++..++||++.+.++
T Consensus         5 ~~rtvfV~nlp~~~te~~l~~~F~~~G~v~~v~l~~~~~~~~kG~afV~f~~~e~a~~al~---~~~~~~~g~~l~v~~~   81 (85)
T d1zh5a2           5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE---TPGQKYKETDLLILFK   81 (85)
T ss_dssp             HTTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHT---CCCCEETTEECEEEEG
T ss_pred             CcCEEEEECCCCCCCHHHHHHHHHHhcccccceeeeeccCCcceEEEEEEcCHHHHHHHHH---HCCCEECCEEEEEEEc
Confidence            4679999999999999999999999999999999743     6899999999999999974   6899999999999886


Q ss_pred             c
Q psy9171         104 G  104 (118)
Q Consensus       104 ~  104 (118)
                      .
T Consensus        82 ~   82 (85)
T d1zh5a2          82 D   82 (85)
T ss_dssp             G
T ss_pred             C
Confidence            4

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.8e-18  Score=114.25  Aligned_cols=74  Identities=12%  Similarity=0.169  Sum_probs=66.3

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      .+.|||+|||+++||+||.++|++||.|.++.++.+      ||+|||+|++.++|..|+..  +|+ .+.||+|.|.+|
T Consensus        10 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~--~~~-~l~Gr~l~V~~a   86 (103)
T d2cqda1          10 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD--PNP-IIDGRKANVNLA   86 (103)
T ss_dssp             SSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTC--SSC-EETTEECEEEES
T ss_pred             CcEEEEeCCCCcCcHHHHHHHHhhcccccceeccccccccccCCeEEEEECCHHHHHHHHHH--CCC-cCCCEEEEEEEc
Confidence            456999999999999999999999999999999753      78999999999999999865  666 699999999998


Q ss_pred             ccc
Q psy9171         104 GYR  106 (118)
Q Consensus       104 ~~~  106 (118)
                      ...
T Consensus        87 ~~~   89 (103)
T d2cqda1          87 YLG   89 (103)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            654

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=2.5e-18  Score=116.77  Aligned_cols=79  Identities=11%  Similarity=0.039  Sum_probs=71.3

Q ss_pred             CCCcEEEeCCCCCccc-H----HHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          28 KPSRVIHIRNIPNEVT-E----AEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vt-e----~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      +++..|||+||++++. +    ++|.+||++||.|.++.+++.+++|||+|++.++|..|+..  +|+..+.||+|.|.|
T Consensus         3 ~~~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~~~~~k~~~~afV~f~~~~~A~~Ai~~--lng~~~~g~~l~v~~   80 (104)
T d1weya_           3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLR--LHKTEFLGKEMKLYF   80 (104)
T ss_dssp             SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHT--STTSEETTEECEEEC
T ss_pred             CCCceEEEEeCCchhcCcHHHHHHHHHHhcccccceEEEEecCCCEEEEEECCHHHHHHHHHH--hcccccCCCEeEEee
Confidence            5677899999999873 3    56889999999999999999999999999999999999865  999999999999999


Q ss_pred             ccccch
Q psy9171         103 SGYRNR  108 (118)
Q Consensus       103 S~~~~~  108 (118)
                      |+.+..
T Consensus        81 a~~~~~   86 (104)
T d1weya_          81 AQTLHI   86 (104)
T ss_dssp             CCCSSC
T ss_pred             cccCCC
Confidence            987654

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.71  E-value=9.4e-19  Score=115.77  Aligned_cols=76  Identities=12%  Similarity=-0.060  Sum_probs=68.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      .++.+|||+|||+++|+++|..+|++||.|.++.++.     .||+|||+|++.++|..|+.   +|+..+.||+|.|.+
T Consensus        11 ~~~~~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~g~~kg~afv~F~~~e~a~~Al~---~~g~~~~g~~i~V~~   87 (91)
T d1fjeb1          11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE---LTGLKVFGNEIKLEK   87 (91)
T ss_dssp             SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH---GGGEEETTEEEEEEC
T ss_pred             CCCcEEEEeCccCcchHHHHHHHHhcCCcEEEeeeeecCCCCccEEeEEeeCCHHHHHHHHh---cCCcEECCEEEEEEe
Confidence            4566899999999999999999999999998877653     37999999999999999973   799999999999999


Q ss_pred             cccc
Q psy9171         103 SGYR  106 (118)
Q Consensus       103 S~~~  106 (118)
                      |+.+
T Consensus        88 ak~k   91 (91)
T d1fjeb1          88 PKGR   91 (91)
T ss_dssp             CCCS
T ss_pred             cCCC
Confidence            9864

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=7.1e-18  Score=107.91  Aligned_cols=70  Identities=10%  Similarity=0.034  Sum_probs=63.9

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc----CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      +|||+|||+++|+++|.++|++||.|.++.+..+    +++|||||+++++|.+|+.   +|+..|+||+|.|..++
T Consensus         2 tv~V~nlp~~~t~~~l~~~F~~~G~I~~v~~~~~~~~~~~~afV~F~~~~~a~~Al~---~~~~~i~g~~i~V~~~T   75 (75)
T d2ghpa2           2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT---KTHKVVGQNEIIVSHLT   75 (75)
T ss_dssp             EEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT---TTTCEETTEECEEEECC
T ss_pred             EEEEECCCCCCCHHHHHHHHhcCCceEEEEEEeeccccceEEEEEEcchHHhHHHHH---hcCcEECCEEEEEEECC
Confidence            6999999999999999999999999999999853    5799999999999999973   68889999999998763

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9.3e-18  Score=109.27  Aligned_cols=72  Identities=11%  Similarity=0.048  Sum_probs=65.2

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      .+.|||+|||+++|+++|.++|++||.|.++.++.+      ||+|||+|.+.++|..|+.   +++..++||+|.|.-|
T Consensus         6 ~~~lfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~---~~~~~i~Gr~i~V~~A   82 (84)
T d1l3ka1           6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN---ARPHKVDGRVVEPKRA   82 (84)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH---TCSCEETTEECEEEEC
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhhccccceeecccccCCCcccEEEEEEcCHHHHHHHHH---hCCCEECCEEEEEEee
Confidence            468999999999999999999999999999999742      7899999999999999974   5788999999999876


Q ss_pred             c
Q psy9171         104 G  104 (118)
Q Consensus       104 ~  104 (118)
                      .
T Consensus        83 ~   83 (84)
T d1l3ka1          83 V   83 (84)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=3e-18  Score=110.36  Aligned_cols=69  Identities=13%  Similarity=0.097  Sum_probs=63.3

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      .|||+|||+++||++|.++|++||.|.++.++.+      ||+|||+|+++++|.+|+.   +|+..++||+|.|..|
T Consensus         2 klfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~---~~~~~i~Gr~i~V~~A   76 (77)
T d1uawa_           2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA---QSRHELDSKTIDPKVA   76 (77)
T ss_dssp             CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHH---TTTCCCSSCCCEEEEC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCcceeeeecccCCCCccceEEEEECCHHHHHHHHH---cCCCEECCeEEEEEEC
Confidence            4899999999999999999999999999999752      7899999999999999974   6899999999998875

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.4e-18  Score=111.49  Aligned_cols=78  Identities=10%  Similarity=0.039  Sum_probs=67.2

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeE--------EEEec------cCceEEEeecchhhhhcccccccccceee
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN--------VLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVL   93 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~--------v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i   93 (118)
                      +++.+|||+|||+++||++|.++|++||.|..        +.+..      .+|+|||+|.+.++|..|+..  +|+..+
T Consensus         6 ~~~~~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~--l~g~~~   83 (101)
T d2cpea1           6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEW--FDGKDF   83 (101)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHH--HTTCEE
T ss_pred             CCCCEEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHH--hCCCEE
Confidence            56789999999999999999999999999843        33332      268999999999999999864  889999


Q ss_pred             CCeeeEEEeccccc
Q psy9171          94 KGKNQVSLISGYRN  107 (118)
Q Consensus        94 ~Gr~v~V~~S~~~~  107 (118)
                      +||+|.|.+|+.+-
T Consensus        84 ~gr~i~V~~a~~~~   97 (101)
T d2cpea1          84 QGSKLKVSLARKKP   97 (101)
T ss_dssp             TTEECEEECSSCCC
T ss_pred             CCEEEEEEEcCCCC
Confidence            99999999998753

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.3e-17  Score=111.89  Aligned_cols=79  Identities=11%  Similarity=0.112  Sum_probs=68.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      ..+.+|||+|||+++||+||.++|.+||.+....++.      .+|+|||||++.++|.+|+.   +|+..|+||.|.|.
T Consensus        13 ~~~~~v~v~nLP~~~te~dI~~~F~~~g~v~~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~---~~~~~i~gR~i~V~   89 (104)
T d1wg5a_          13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK---KHKERIGHRYIEIF   89 (104)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHT---TTTCCSSSSCCEEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCcceEEEEEeCCHHHHHHHHh---hCCCEEcceEEEEE
Confidence            4466899999999999999999999999998865553      27899999999999998863   68899999999999


Q ss_pred             eccccchH
Q psy9171         102 ISGYRNRQ  109 (118)
Q Consensus       102 ~S~~~~~~  109 (118)
                      .++.+..+
T Consensus        90 ~~~~~~~~   97 (104)
T d1wg5a_          90 KSSRAEVR   97 (104)
T ss_dssp             EECTTTSC
T ss_pred             ECCHHHhc
Confidence            99776543

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-17  Score=112.02  Aligned_cols=76  Identities=11%  Similarity=0.153  Sum_probs=65.7

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      +++.+|||+|||+++||+||.++|++||.+ ++.++.     .+|+|||||++.++|..|+.   +|+..|.||.|.|.+
T Consensus        13 ~~~~~v~v~nLp~~~te~dl~~~F~~~~~~-~v~~~~~~~g~~~G~afVeF~~~~~a~~Al~---~~~~~i~gR~I~V~~   88 (102)
T d1weza_          13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA---KDKANMQHRYVELFL   88 (102)
T ss_dssp             SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT---TSSCCSSSSCCEEEE
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHhccCcc-eeeeEEecCCcceEEEEEEECCHHHHHHHHH---cCCCEECCEEEEEEE
Confidence            556799999999999999999999999855 565553     27899999999999999963   789999999999999


Q ss_pred             ccccc
Q psy9171         103 SGYRN  107 (118)
Q Consensus       103 S~~~~  107 (118)
                      |+.+.
T Consensus        89 s~~~~   93 (102)
T d1weza_          89 NSTAG   93 (102)
T ss_dssp             ECCCC
T ss_pred             cCCCC
Confidence            87654

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=7.7e-18  Score=110.72  Aligned_cols=70  Identities=11%  Similarity=0.176  Sum_probs=62.8

Q ss_pred             CcEEEeCCCCCcccHHHH---HHhccCCCceeEEEEecc---------CceEEEeecchhhhhcccccccccceeeCCee
Q psy9171          30 SRVIHIRNIPNEVTEAEI---IHLGIPFGRVTNVLVLKG---------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN   97 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL---~~Lf~~fG~V~~v~l~~~---------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~   97 (118)
                      .++|||+|||+++|++||   .++|++||+|.++.+.++         +|+|||+|++.++|..|+..  +|+..+.||+
T Consensus         8 ~n~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~--lng~~~~gr~   85 (89)
T d2cpia1           8 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC--VNNVVVDGRT   85 (89)
T ss_dssp             SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH--HTTEEETTEE
T ss_pred             cCEEEEECCCCccCHHHHHHHHHHhcccCCceEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHH--hCCCEECCEE
Confidence            456999999999999999   678999999999999853         37899999999999999865  8999999999


Q ss_pred             eEEE
Q psy9171          98 QVSL  101 (118)
Q Consensus        98 v~V~  101 (118)
                      |+++
T Consensus        86 lkvS   89 (89)
T d2cpia1          86 LKAS   89 (89)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9874

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.4e-17  Score=111.41  Aligned_cols=73  Identities=5%  Similarity=-0.130  Sum_probs=67.3

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      +.+|||+|||++++++||.++|++||.|.++.+. .+|+|||+|.+.++|..|+..  +|+..++||++.+.|.+-
T Consensus        15 ~~~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i~-~~g~afV~f~~~~~a~~Ai~~--lng~~~~g~~i~v~~~~~   87 (98)
T d1wg4a_          15 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQ-KDGMGMVEYLRKEDMEYALRK--LDDTKFRSHEGETSYIRV   87 (98)
T ss_dssp             SCEEEEECCCSSCCHHHHHHHHTTSSCEEEEEEE-TTTEEEEEESSHHHHHHHHHH--HSSEEEECTTSCEEEEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhhccccccccc-ccceEEEEECCHHHHHHHHHH--hCCCEeCCeEEEEEEEec
Confidence            5579999999999999999999999999999876 469999999999999999864  899999999999999864

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=5.9e-18  Score=106.59  Aligned_cols=68  Identities=15%  Similarity=0.154  Sum_probs=62.3

Q ss_pred             EEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      |||+|||+++||+||.++|++||.+.++.+..      .+++|||+|++.++|.+|+.   +|+..++||+|.|..|
T Consensus         2 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~---~~~~~l~gr~i~V~~A   75 (75)
T d2msta_           2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE---IHFHEINNKMVECKKA   75 (75)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTSCCSEECCBCCTTCTTSCCEEEEECSCHHHHHHHHH---CSSCCBTTBCCEEEEC
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeeccccccCceeEEEECCHHHHHHHHh---cCCCEECCeEEEEEEC
Confidence            89999999999999999999999999998864      27899999999999999963   7899999999999875

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.4e-18  Score=107.51  Aligned_cols=67  Identities=12%  Similarity=0.044  Sum_probs=61.0

Q ss_pred             EEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      |||+|||+++||++|.++|++||.|.++.+..+      ||+|||+|.+.++|..|+.   +++..++||+|.|.-
T Consensus         2 lfV~nl~~~~te~~l~~~F~~~G~i~~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~---~~~~~l~Gr~i~V~r   74 (75)
T d1hd0a_           2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD---QKEHKLNGKVIDPKR   74 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCEEEEECCCBTTTTBCCSEEEEEESSHHHHHHHHH---TCCCCBTTBCCEECC
T ss_pred             EEEeCCCCcCCHHHHHHHHHhhccccccccccCCCCCCcCceEEEEECCHHHHHHHHh---cCCCEECCCEEEeeE
Confidence            899999999999999999999999999998752      7899999999999999974   577889999998754

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.5e-18  Score=108.22  Aligned_cols=68  Identities=12%  Similarity=0.052  Sum_probs=61.6

Q ss_pred             EEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      |||+|||+++||++|.++|++||.|.++.++.+      ||+|||+|++.++|.+|+.   .++-.+.||.+.|..|
T Consensus         2 lfVgnLp~~~te~~l~~~F~~~G~I~~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~---~~~~~i~g~~i~vk~A   75 (75)
T d1x0fa1           2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME---KKYHNVGLSKCEIKVA   75 (75)
T ss_dssp             EEEESCCSSCCHHHHHHHHHHHSCEEEEECCCCTTTCCTTCCEEEEESSSHHHHHHTT---CSSCCBTTBCCEEECC
T ss_pred             EEEcCCCCCCCHHHHHHHHHHhCCcccccccccccccccccEEEEEECCHHHHHHHHh---hCCCEECCEEeEEEEC
Confidence            899999999999999999999999999998753      7899999999999999985   3567899999988765

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.5e-18  Score=112.47  Aligned_cols=74  Identities=20%  Similarity=0.220  Sum_probs=65.5

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI  102 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~  102 (118)
                      ..++.|||+|||+++|+++|.++|++||.|..+.+..+     +|+|||+|.+.++|.+|+..  +|+..|+||++.+..
T Consensus        16 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~--lng~~i~gr~~~v~~   93 (101)
T d1x5oa1          16 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH--FNGKFIKTPPGVSAP   93 (101)
T ss_dssp             CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHH--HBTCCCCCCTTSCCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhcccccceeeecccccccccceeEEeCCHHHHHHHHHH--hCCCEECCcCCccCC
Confidence            34568999999999999999999999999999988753     68999999999999999854  899999999987755


Q ss_pred             c
Q psy9171         103 S  103 (118)
Q Consensus       103 S  103 (118)
                      +
T Consensus        94 ~   94 (101)
T d1x5oa1          94 T   94 (101)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.1e-18  Score=106.00  Aligned_cols=65  Identities=11%  Similarity=0.205  Sum_probs=59.5

Q ss_pred             EEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      |||+|||+++|+++|.++|++||.|..+.+..      .+|+|||+|++.++|..|+..  +|+..++||.++
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~--lng~~~~Gr~~k   71 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA--LKASGVQAQMAK   71 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHH--HHHHTCCEESCC
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhccccccccccccccccccceeEEEECCHHHHHHHHHH--hCCCEECCEECc
Confidence            79999999999999999999999999998874      379999999999999999854  899999999763

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.6e-18  Score=111.60  Aligned_cols=71  Identities=6%  Similarity=-0.066  Sum_probs=64.8

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY  105 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~  105 (118)
                      .|||+|||+++|++||.++|++||.|.++.+.+ +|+|||+|++.++|..|+..  +|+..+.|+.+.+.+++-
T Consensus         2 rvfV~nlp~~~~~~~l~~~F~~~G~v~~~~i~~-~g~afV~f~~~~~a~~Ai~~--l~g~~~~g~~i~v~~~~~   72 (87)
T d3begb1           2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR-DGTGVVEFVRKEDMTYAVRK--LDNTKFRSHEGETAYIRV   72 (87)
T ss_dssp             CEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT-TSEEEEEESSHHHHHHHHHH--HTTCBCCCTTSCCCBCEE
T ss_pred             eEEEECCCCcCCHHHHHHHHhhhcccccccccc-cceeeEEeCCHHHHHHHHHH--hCCCEECCcEeEEeEEec
Confidence            499999999999999999999999999999765 59999999999999999854  899999999998888753

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.3e-17  Score=109.05  Aligned_cols=75  Identities=15%  Similarity=0.088  Sum_probs=66.2

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCc-eeEEEEecc-------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGR-VTNVLVLKG-------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~-V~~v~l~~~-------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      -|||+|||.++|+++|.++|++||. |.++.++++       ||+|||+|++.++|..|+.....++..+.|++|.|.+|
T Consensus         3 rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~~A   82 (96)
T d2disa1           3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA   82 (96)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred             EEEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEEEc
Confidence            5999999999999999999999995 899998742       68999999999999999865444578889999999999


Q ss_pred             ccc
Q psy9171         104 GYR  106 (118)
Q Consensus       104 ~~~  106 (118)
                      +.+
T Consensus        83 ~p~   85 (96)
T d2disa1          83 EPE   85 (96)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            764

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=3.3e-17  Score=106.01  Aligned_cols=74  Identities=11%  Similarity=0.140  Sum_probs=63.2

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEE-EEec-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV-LVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v-~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      |+..+|||+|||+++|++||.++|++||.+... .+..     .+|+|||+|++.++|..|+..  +|+..+.||+|.|.
T Consensus         7 p~~~~l~v~nLp~~~~~~di~~~F~~~~~~~~~~~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~--l~~~~l~gr~i~v~   84 (86)
T d2cqpa1           7 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID--LNDRPIGSRKVKLV   84 (86)
T ss_dssp             CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHH--TTTCEETTEECEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhhcccceeEEEEEeCCCCCcceEEEEEEcCcHHHHHHHHH--cCCCEECCEEEEEE
Confidence            334459999999999999999999999999763 4442     268999999999999999854  89999999999997


Q ss_pred             ec
Q psy9171         102 IS  103 (118)
Q Consensus       102 ~S  103 (118)
                      .+
T Consensus        85 l~   86 (86)
T d2cqpa1          85 LG   86 (86)
T ss_dssp             ES
T ss_pred             EC
Confidence            64

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.9e-17  Score=109.03  Aligned_cols=75  Identities=20%  Similarity=0.185  Sum_probs=65.0

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEE-EEec-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV-LVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v-~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      ..+.+|||+|||+++|++||.++|..||.+... .+..     .+|+|||+|.+.++|..|+.   +|+..|.||+|.|.
T Consensus         6 ~~~~~v~v~nLp~~~t~~~l~~~F~~~g~i~~~~~~~~~~~g~~~G~afV~F~s~~~a~~Al~---~n~~~i~gr~i~V~   82 (103)
T d2cpya1           6 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER---LHRKKLNGREAFVH   82 (103)
T ss_dssp             SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGG---GCSEEETTEEEEEE
T ss_pred             CCceEEEEeCCCCCCCHHHHhhhhcccceEEEEEEEEeCCCCCcCccEEEEECCHHHHHHHHh---cCCCeECCcEEEEE
Confidence            345679999999999999999999999999764 4432     27999999999999999973   78999999999999


Q ss_pred             eccc
Q psy9171         102 ISGY  105 (118)
Q Consensus       102 ~S~~  105 (118)
                      .+..
T Consensus        83 ~~~~   86 (103)
T d2cpya1          83 VVTL   86 (103)
T ss_dssp             EECH
T ss_pred             ECCH
Confidence            9854

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.7e-17  Score=111.86  Aligned_cols=66  Identities=12%  Similarity=0.037  Sum_probs=60.7

Q ss_pred             CCCCCcEEEeCC--CCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceee
Q psy9171          26 DFKPSRVIHIRN--IPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVL   93 (118)
Q Consensus        26 ~~~PS~vL~V~N--LP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i   93 (118)
                      +..|++.|+|+|  ||+++||++|.++|++||.|.++.+.++|++|||+|++.++|..|+..  +|+..+
T Consensus        14 ~~~pt~~l~V~ng~L~~~vte~~L~~~F~~~G~i~~i~~~~~k~~aFV~f~~~e~A~~A~~~--lng~~i   81 (101)
T d2cq2a1          14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT--LNGKEV   81 (101)
T ss_dssp             CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH--TTTCEE
T ss_pred             CCCCCceEEEECCCCCCCCCHHHHHHHHHhhCcccEEeeccCccEEEEEECCHHHHHHHHHH--hCCCCC
Confidence            348999999966  999999999999999999999999999999999999999999999864  888776

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6.5e-17  Score=110.02  Aligned_cols=81  Identities=6%  Similarity=0.025  Sum_probs=67.7

Q ss_pred             CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEe-c-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171          28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL-K-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL  101 (118)
Q Consensus        28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~-~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~  101 (118)
                      .+..+|||+|||+++|++||.++|++||.+.++.++ .     .+|+|||||.+.++|.+|+.   +|+..|+||.|.|.
T Consensus        16 ~~~~~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~~~~~~~g~~~G~afVeF~~~e~a~~al~---~~~~~i~gR~i~V~   92 (112)
T d1wela1          16 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC---RHKQYMGNRFIQVH   92 (112)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT---SCSBCSTTSCBEEE
T ss_pred             CCCeEEEEecCCCcCcHHHHhhHHhhccccccceeeecCcccceeeEEEEEECCHHHHHHHHH---cCCCcCCCEEEEEE
Confidence            557799999999999999999999999999764443 2     26899999999999998863   79999999999999


Q ss_pred             eccccchHHH
Q psy9171         102 ISGYRNRQSA  111 (118)
Q Consensus       102 ~S~~~~~~~~  111 (118)
                      .+..+...++
T Consensus        93 ~~~~~~~~~~  102 (112)
T d1wela1          93 PITKKGMLEK  102 (112)
T ss_dssp             EECHHHHHHH
T ss_pred             EcChHHHHHH
Confidence            8865443333

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.3e-15  Score=105.51  Aligned_cols=84  Identities=11%  Similarity=0.127  Sum_probs=72.3

Q ss_pred             CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171          25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ   98 (118)
Q Consensus        25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v   98 (118)
                      ....++++|||+|||+++|+++|..+|+.||.|..+.++.+      +|+|||+|.+.++|..|+.   +++..+.|+++
T Consensus        92 ~~~~~~~~i~V~~lp~~~te~~L~~~f~~~G~v~~~~i~~~~~~~~~~g~~fV~f~~~e~A~~Al~---~~~~~~~G~~i  168 (183)
T d1u1qa_          92 GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI---QKYHTVNGHNC  168 (183)
T ss_dssp             TTTCCCSEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHT---SSCEEETTEEE
T ss_pred             ccccccceeEEccCCCcCCHHHHhhhhccCCceeeeeeecccccCccceeEEEEECCHHHHHHHHH---hCCCeECCEEE
Confidence            34467889999999999999999999999999999988752      6799999999999999974   56778999999


Q ss_pred             EEEeccccchHHHHH
Q psy9171          99 VSLISGYRNRQSAAL  113 (118)
Q Consensus        99 ~V~~S~~~~~~~~~~  113 (118)
                      .|.+|.  +++|.+.
T Consensus       169 ~V~~A~--~k~e~~~  181 (183)
T d1u1qa_         169 EVRKAL--SKQEMAS  181 (183)
T ss_dssp             EEEECC--CHHHHHH
T ss_pred             EEEecC--Ccccccc
Confidence            999885  4566654

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.8e-17  Score=105.80  Aligned_cols=71  Identities=15%  Similarity=0.135  Sum_probs=61.6

Q ss_pred             cEEEeCCCCCcccHHHHHHhccCCCceeEEEEe-----------ccCceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171          31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL-----------KGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV   99 (118)
Q Consensus        31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~-----------~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~   99 (118)
                      |.|||+|||+++||+||.++|++||.+..+.+.           +.||+|||+|.+.++|..|+   .+|+..+.||+|.
T Consensus         2 RrlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~---~l~g~~~~Gr~l~   78 (90)
T d1u2fa_           2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM---AFDGIIFQGQSLK   78 (90)
T ss_dssp             CEEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGG---GGSSCCSSSSCCC
T ss_pred             CEEEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHH---hhCCcEECCEEEE
Confidence            679999999999999999999999988655443           34899999999999999986   2899999999999


Q ss_pred             EEecc
Q psy9171         100 SLISG  104 (118)
Q Consensus       100 V~~S~  104 (118)
                      |.-++
T Consensus        79 V~r~k   83 (90)
T d1u2fa_          79 IRRPH   83 (90)
T ss_dssp             CBCTT
T ss_pred             ECCCC
Confidence            86543

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.8e-15  Score=102.19  Aligned_cols=74  Identities=12%  Similarity=0.103  Sum_probs=59.3

Q ss_pred             CCCcE-EEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecch-hhhhcccccccccceeeCCeeeEEEec
Q psy9171          28 KPSRV-IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE-IIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        28 ~PS~v-L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~-e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      ++.-+ +||+|||+++|+++|.++|++||+|.++.++++++.|||+|.+. ++|..|+..  +|+..+.++.+.+..+
T Consensus         8 ~~g~~~~fvgnL~~~~tee~Lk~~F~~fG~V~~v~i~~~kg~gfV~F~~~~~~A~~a~~~--~~~~~l~~~~~~v~~~   83 (113)
T d1owxa_           8 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKD--ANNGNLQLRNKEVTWE   83 (113)
T ss_dssp             CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHH--TTTSCBCTTSSSEEEE
T ss_pred             CCCCeEEEECCCCCCCCHHHHHHHHHhcCChheEEEecCCceEEEEecCcHHHHHHHHHH--hcCCceecCceEEEEe
Confidence            34445 59999999999999999999999999999999999999999996 678777754  6655555554444443

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.9e-14  Score=95.31  Aligned_cols=76  Identities=12%  Similarity=0.137  Sum_probs=67.0

Q ss_pred             CCCCcEEEeCCC--CCccc---------HHHHHHhccCCCceeEEEEecc--CceEEEeecchhhhhcccccccccceee
Q psy9171          27 FKPSRVIHIRNI--PNEVT---------EAEIIHLGIPFGRVTNVLVLKG--KNQLLLHLEAEIIHLGIPFGRVTNVLVL   93 (118)
Q Consensus        27 ~~PS~vL~V~NL--P~~vt---------e~dL~~Lf~~fG~V~~v~l~~~--kgqAFVEm~~~e~A~~ai~~~~~n~~~i   93 (118)
                      ..+|++|+|+||  |.++.         ++||.+.|++||.|.++.+..+  +|+|||+|+++++|..|+..  +|+..+
T Consensus         5 ~~~~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v~~~~~~~~G~~fV~f~~~e~A~~A~~~--lng~~~   82 (99)
T d2dita1           5 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQT--LDGRWF   82 (99)
T ss_dssp             CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHH--STTCEE
T ss_pred             CCCccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEEEeccCCCCccEEEEEECCHHHHHHHHHH--hCCcEE
Confidence            368999999999  76542         4788999999999999998864  79999999999999999855  999999


Q ss_pred             CCeeeEEEecc
Q psy9171          94 KGKNQVSLISG  104 (118)
Q Consensus        94 ~Gr~v~V~~S~  104 (118)
                      .||+|.+.|..
T Consensus        83 ~gr~i~v~~~~   93 (99)
T d2dita1          83 GGRQITAQAWD   93 (99)
T ss_dssp             TTEECEEEECC
T ss_pred             CCEEEEEEEeC
Confidence            99999999974

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.7e-14  Score=96.89  Aligned_cols=76  Identities=13%  Similarity=0.204  Sum_probs=65.9

Q ss_pred             CCCCcEEEeCCC--CCcc--------cHHHHHHhccCCCceeEEEEec--------cCceEEEeecchhhhhcccccccc
Q psy9171          27 FKPSRVIHIRNI--PNEV--------TEAEIIHLGIPFGRVTNVLVLK--------GKNQLLLHLEAEIIHLGIPFGRVT   88 (118)
Q Consensus        27 ~~PS~vL~V~NL--P~~v--------te~dL~~Lf~~fG~V~~v~l~~--------~kgqAFVEm~~~e~A~~ai~~~~~   88 (118)
                      .+||++|.|+|+  |.++        ..+||.+.|++||.|.++.+.+        .+|.|||+|++.++|..|+..  +
T Consensus         1 g~Ps~vl~l~N~~~~~~l~~~~~~~~i~edi~~e~~k~G~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~--l   78 (104)
T d1o0pa_           1 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQG--L   78 (104)
T ss_dssp             CCCCSEEEEESSCCTTTTTSHHHHHHHHHHHHHHHTTTSCEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHH--H
T ss_pred             CCCCcEEEEeCCCCHHHcCCchhHHHHHHHHHHHhcccCceEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHH--H
Confidence            389999999999  5543        4567899999999999999864        247999999999999999854  9


Q ss_pred             cceeeCCeeeEEEecc
Q psy9171          89 NVLVLKGKNQVSLISG  104 (118)
Q Consensus        89 n~~~i~Gr~v~V~~S~  104 (118)
                      |+..+.||+|.+.|+.
T Consensus        79 ~Gr~f~gR~v~v~f~~   94 (104)
T d1o0pa_          79 TGRKFANRVVVTKYCD   94 (104)
T ss_dssp             SSCCSSSSCCEEEEEC
T ss_pred             CCCEECCeEEEEEEcC
Confidence            9999999999999985

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2e-15  Score=102.12  Aligned_cols=70  Identities=13%  Similarity=0.116  Sum_probs=65.1

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      .++|++++.+++|++|.++|++||.|.++.++++     ||+|||+|++.++|..|+..  +|+.++.||+|.+.||
T Consensus        29 ~~~v~~~~~~~~ed~l~e~f~k~G~I~~v~I~~~~~~~~~G~~fV~f~~~~~A~~Ai~~--lng~~~~gr~i~v~~s  103 (104)
T d1jmta_          29 DVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVID--LNNRWFNGQPIHAELS  103 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHH--HTTCEETTEECCEEEC
T ss_pred             hHHhhhhhhhhhHHHHHHHhccCCCEEEEEeecCCCCCEeeEEEEEEechhHHHHHHHH--HCCCEECCEEEEEEEC
Confidence            4889999999999999999999999999999753     79999999999999999864  8999999999999987

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.3e-13  Score=96.34  Aligned_cols=74  Identities=12%  Similarity=0.061  Sum_probs=64.2

Q ss_pred             CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171          30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS  103 (118)
Q Consensus        30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S  103 (118)
                      .|+|||+|||+++||++|.++|++||.|.++.++.      .+|+|||+|.+.++|..|+.   .++..+.++.+.+...
T Consensus         6 ~r~lfV~nLp~~~te~~L~~~F~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~---~~~~~~~~~~~~~~~~   82 (183)
T d1u1qa_           6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN---ARPHKVDGRVVEPKRA   82 (183)
T ss_dssp             HHEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH---TCSCEETTEECEEEEC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHcCCEEEEEeeecccCCCccCceecccCCHHHHHHHHH---hcCCcccccchhhhhh
Confidence            48999999999999999999999999999999874      27899999999999999964   5677888888877765


Q ss_pred             ccc
Q psy9171         104 GYR  106 (118)
Q Consensus       104 ~~~  106 (118)
                      ..+
T Consensus        83 ~~~   85 (183)
T d1u1qa_          83 VSR   85 (183)
T ss_dssp             CCT
T ss_pred             hhc
Confidence            443

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=1.1e-12  Score=85.26  Aligned_cols=71  Identities=4%  Similarity=-0.046  Sum_probs=61.3

Q ss_pred             cEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCee-eEEEeccc
Q psy9171          31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN-QVSLISGY  105 (118)
Q Consensus        31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~-v~V~~S~~  105 (118)
                      .-|+|.++|++.|++.| +.|++||.|.++.+.+.||+|||+|++.++|.+|+.   +|+..+.|+. |.|.-.+.
T Consensus         5 ~wV~V~G~p~~~~~~il-~~F~~~G~I~~~~~~~~~~~~fV~f~~~~~A~~Al~---~nG~~~~g~~~vgV~~~~~   76 (81)
T d1wwha1           5 TWVTVFGFPQASASYIL-LQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS---KDGRIFGESIMIGVKPCID   76 (81)
T ss_dssp             GEEEEECCCGGGHHHHH-HHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT---TTTCEETTTEECEEEECCC
T ss_pred             cEEEEECCChHHHHHHH-HHHHhhhhhheEEecCCCCEEEEEEcccHHHHHHHh---cCCCeECCcEEEEEEeCCC
Confidence            45999999999997555 679999999999998899999999999999999973   7999999985 55766554

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00011  Score=48.71  Aligned_cols=71  Identities=11%  Similarity=0.128  Sum_probs=56.2

Q ss_pred             CCCCCcEEEeCCCCCccc---------HHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCe
Q psy9171          26 DFKPSRVIHIRNIPNEVT---------EAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK   96 (118)
Q Consensus        26 ~~~PS~vL~V~NLP~~vt---------e~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr   96 (118)
                      ..||.-+|-|+=..++..         -.+|.+.|.+||.|..++.+.  ++.+|.|.|-.+|.+|+   .+++.++.||
T Consensus        11 qGPpDgTIvV~i~~~s~e~~~~FDe~l~~~Llq~l~~~GeViLvRFv~--d~mwVTF~dG~SAL~al---~l~g~~v~G~   85 (95)
T d1ufwa_          11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQ--GQMLVTFADSHSALSVL---DVDGMKVKGR   85 (95)
T ss_dssp             CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEET--TEEEEECSCSHHHHHHH---HGGGSEETTE
T ss_pred             cCCCCcEEEEEeccCCccccccCCHHHHHHHHHHHhhCCeEEEEEEeC--CeEEEEECCcHHHHHHh---ccCCeEEcce
Confidence            347777766644433333         346788899999999999986  57999999999999996   3889999999


Q ss_pred             eeEEE
Q psy9171          97 NQVSL  101 (118)
Q Consensus        97 ~v~V~  101 (118)
                      .+.+.
T Consensus        86 ~l~It   90 (95)
T d1ufwa_          86 AVKIS   90 (95)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99886

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00019  Score=45.48  Aligned_cols=64  Identities=9%  Similarity=0.049  Sum_probs=53.0

Q ss_pred             CCcccHHHHHHhccCCCceeEEEEecc---CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171          39 PNEVTEAEIIHLGIPFGRVTNVLVLKG---KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG  104 (118)
Q Consensus        39 P~~vte~dL~~Lf~~fG~V~~v~l~~~---kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~  104 (118)
                      +.+--.+.|.+.|.++|.|.++.+.+.   --.|=|.+++..+|.-++..  ++...|.+|+|.|.|++
T Consensus         5 ~~kelqq~L~~~f~~h~~V~sv~l~~~~dg~~~A~V~v~~~q~A~~~v~~--LhR~KiG~KRI~Vs~~~   71 (73)
T d2dgxa1           5 SRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNS--LHRYKIGSKKILVSLAT   71 (73)
T ss_dssp             CHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHH--HTTEEETTEEEEEEECC
T ss_pred             CHHHHHHHHHHHHHhheeEEEEEEEeccCCcEEEEEEcCCHHHHHHHHHH--HHHHhcCCeEEEEEEec
Confidence            333345566788999999999999763   23499999999999999855  88999999999999986

>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Smg-4/UPF3
domain: RNA processing protein UPF3x, RRM domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.011  Score=38.24  Aligned_cols=75  Identities=9%  Similarity=0.131  Sum_probs=53.0

Q ss_pred             EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc--------CceEEEeecchhhhhcccccccccceeeCCe----eeE
Q psy9171          32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG--------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK----NQV   99 (118)
Q Consensus        32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~--------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr----~v~   99 (118)
                      .|.||.||+..||+++.+.+++.|.+.-+...++        -.-|.|-|.+.++....... .-....++.+    +-.
T Consensus         3 KvVvRrLPP~Lte~~F~~~l~~~~~~d~~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~-f~g~~F~D~~g~~~~a~   81 (91)
T d1uw4a_           3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDR-FDGYVFLDNKGQEYPAI   81 (91)
T ss_dssp             EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHH-HTTCEEECTTCCEEECE
T ss_pred             eEEEecCCCCCCHHHHHHHhCCcCceEEEEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHH-cCCcEEEcCCCCEeeeE
Confidence            4889999999999999999999999887777654        13499999999887665322 1223333333    335


Q ss_pred             EEeccccc
Q psy9171         100 SLISGYRN  107 (118)
Q Consensus       100 V~~S~~~~  107 (118)
                      |.||-++.
T Consensus        82 VE~AP~qk   89 (91)
T d1uw4a_          82 VEFAPFQK   89 (91)
T ss_dssp             EEECSSCC
T ss_pred             EEEcCccc
Confidence            66666644

>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-specific ribonuclease PARN
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.07  E-value=0.056  Score=35.52  Aligned_cols=54  Identities=15%  Similarity=0.192  Sum_probs=42.8

Q ss_pred             CCCcE-EEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhccc
Q psy9171          28 KPSRV-IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIP   83 (118)
Q Consensus        28 ~PS~v-L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai   83 (118)
                      .|+|- +|.=..|......||.+||+|||.|.=.-+  +-..|||...+.++|..+.
T Consensus        12 ~p~RdHVf~~tFP~~Wk~~dI~~lFSpfG~V~VswI--ddTSa~V~L~~~e~~~~v~   66 (100)
T d1whva_          12 QPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWI--DDTSAFVSLSQPEQVQIAV   66 (100)
T ss_dssp             CCCCCSEEEEECCTTCCHHHHHHHHTTTCSCCCEEE--ETTEEEEECSCHHHHHHHH
T ss_pred             CCCcceeEEEeCCcccchhHHHHHhcCCCceEEEEe--cCceEEEEecCHHHHHHHH
Confidence            34443 777789999999999999999999753333  3468999999999988775