Psyllid ID: psy9193

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEIKKSWKD
Secondary Structure (PSIPRED)
cEEEEEEcccccccccccccccccccEEEcccEEEEEEEEEEccccccccEEEEEEEEcEEEEEEEEEEEEcccccccccEEcccccccccEEEEEEEEEEEEEEEccccccEEEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEccEEEEEEEEcccEEccccHHHcEEEEEEEEEEcccccEEEEEHHHHHHHcccEEEEEEEEEEEEccEEEEEEEEcccEEccccHHHcEEEEEEEEEEcccccEEEEEEEEEEEEccccc
Coil and Loop (DISEMBL)
mvhmvgsyppslelqsyttppedapsgmlargvysvqslftddddaeHLKWVTLILLPLRFAVDKMVHMvgsyppslelqsyttppedapsgmlargvysvqslftddddaehLKWEWTFEIKKSWKD
Flexible Loop (DISEMBL)
mvhmvgsyppslelqsYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEwtfeikkswkd
Low Complexity Region (SEG)
MVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEIKKSWKD
Disordered region (IsUnstruct)
****************************LARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYP*******************LARGVYSVQSLFTDDDDAEHLKWEWTFEIK*****
Disordered Region (DISOPRED)
MVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEIKKSW**
Disordered Region (DISEMBL)
MVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEIKKSWKD
Disordered Region (DISPRO)
MVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEIKKSW**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEIKKSWKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
Q4R4J0	204	Rho GDP-dissociation inhi	N/A	N/A	0.515	0.323	0.590	2e-17
P52565	204	Rho GDP-dissociation inhi	yes	N/A	0.515	0.323	0.590	2e-17
Q5XI73	204	Rho GDP-dissociation inhi	yes	N/A	0.515	0.323	0.575	3e-17
Q99PT1	204	Rho GDP-dissociation inhi	yes	N/A	0.515	0.323	0.575	3e-17
P19803	204	Rho GDP-dissociation inhi	yes	N/A	0.515	0.323	0.575	4e-17
P52566	201	Rho GDP-dissociation inhi	no	N/A	0.5	0.318	0.578	3e-15
Q61599	200	Rho GDP-dissociation inhi	no	N/A	0.5	0.32	0.578	3e-15
Q99819	225	Rho GDP-dissociation inhi	no	N/A	0.531	0.302	0.558	4e-15
Q9TU03	200	Rho GDP-dissociation inhi	no	N/A	0.765	0.49	0.465	4e-15
Q62160	225	Rho GDP-dissociation inhi	no	N/A	0.531	0.302	0.514	9e-15

>sp|Q4R4J0|GDIR1_MACFA Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis GN=ARHGDIA PE=2 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 46/66 (69%)

Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P  E   + TP E+AP GMLARG YS++S FTDDD  +HL WEW   I
Sbjct: 139 IDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 198

Query: 123 KKSWKD 128
           KK WKD
Sbjct: 199 KKDWKD 204

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.
Macaca fascicularis (taxid: 9541)

>sp|P52565|GDIR1_HUMAN Rho GDP-dissociation inhibitor 1 OS=Homo sapiens GN=ARHGDIA PE=1 SV=3

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 46/66 (69%)

Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P  E   + TP E+AP GMLARG YS++S FTDDD  +HL WEW   I
Sbjct: 139 IDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 198

Query: 123 KKSWKD 128
           KK WKD
Sbjct: 199 KKDWKD 204

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Homo sapiens (taxid: 9606)

>sp|Q5XI73|GDIR1_RAT Rho GDP-dissociation inhibitor 1 OS=Rattus norvegicus GN=Arhgdia PE=1 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 46/66 (69%)

Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P  E   + TP E+AP GMLARG Y+++S FTDDD  +HL WEW   I
Sbjct: 139 IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEWNLTI 198

Query: 123 KKSWKD 128
           KK WKD
Sbjct: 199 KKEWKD 204

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Rattus norvegicus (taxid: 10116)

>sp|Q99PT1|GDIR1_MOUSE Rho GDP-dissociation inhibitor 1 OS=Mus musculus GN=Arhgdia PE=1 SV=3

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 46/66 (69%)

Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P  E   + TP E+AP GMLARG Y+++S FTDDD  +HL WEW   I
Sbjct: 139 IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEWNLTI 198

Query: 123 KKSWKD 128
           KK WKD
Sbjct: 199 KKEWKD 204

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|P19803|GDIR1_BOVIN Rho GDP-dissociation inhibitor 1 OS=Bos taurus GN=ARHGDIA PE=1 SV=3

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 46/66 (69%)

Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P  E   + TP E+AP GMLARG Y+++S FTDDD  +HL WEW   I
Sbjct: 139 IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTI 198

Query: 123 KKSWKD 128
           KK WKD
Sbjct: 199 KKEWKD 204

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|P52566|GDIR2_HUMAN Rho GDP-dissociation inhibitor 2 OS=Homo sapiens GN=ARHGDIB PE=1 SV=3

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 41/64 (64%)

Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           VDK   MVGSY P  E   + TP E+AP GMLARG Y  +S FTDDD  +HL WEW   I
Sbjct: 136 VDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSI 195

Query: 123 KKSW 126
           KK W
Sbjct: 196 KKEW 199

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Homo sapiens (taxid: 9606)

>sp|Q61599|GDIR2_MOUSE Rho GDP-dissociation inhibitor 2 OS=Mus musculus GN=Arhgdib PE=1 SV=3

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 41/64 (64%)

Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           VDK   MVGSY P  E   + TP E+AP GMLARG Y  +S FTDDD  +HL WEW   I
Sbjct: 135 VDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNLAI 194

Query: 123 KKSW 126
           KK W
Sbjct: 195 KKDW 198

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|Q99819|GDIR3_HUMAN Rho GDP-dissociation inhibitor 3 OS=Homo sapiens GN=ARHGDIG PE=2 SV=2

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 43/68 (63%)

Query: 61  FAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTF 120
             VDK V+MVGSY PS +   + TP E+AP G L RG Y V SLFTDDD   HL WEW  
Sbjct: 158 LRVDKTVYMVGSYGPSAQEYEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGL 217

Query: 121 EIKKSWKD 128
            I + WKD
Sbjct: 218 CICQDWKD 225

Inhibits GDP/GTP exchange reaction of RhoB. Interacts specifically with the GDP- and GTP-bound forms of post-translationally processed Rhob and Rhog proteins, both of which show a growth-regulated expression in mammalian cells. Stimulates the release of the GDP-bound but not the GTP-bound RhoB protein. Also inhibits the GDP/GTP exchange of RhoB but shows less ability to inhibit the dissociation of prebound GTP.

Homo sapiens (taxid: 9606)

>sp|Q9TU03|GDIR2_BOVIN Rho GDP-dissociation inhibitor 2 OS=Bos taurus GN=ARHGDIB PE=2 SV=3

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 55/101 (54%), Gaps = 3/101 (2%)

Query: 28  MLARGV-YSVQSLF-TDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTP 85
           +L  GV Y V+  F  + D    LK+V          VDK   MVGSY P  E   + TP
Sbjct: 99  VLKEGVEYRVKINFKVNKDIVSGLKYVQHTYR-TGVKVDKATFMVGSYGPRPEEYEFLTP 157

Query: 86  PEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEIKKSW 126
            E+AP GMLARG Y  +S FTDDD  +HL WEW   IKK W
Sbjct: 158 IEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDW 198

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|Q62160|GDIR3_MOUSE Rho GDP-dissociation inhibitor 3 OS=Mus musculus GN=Arhgdig PE=2 SV=1

 Score = 78.6 bits (192), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 43/68 (63%)

Query: 61  FAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTF 120
             VDK + MVGSY P  +   + T  E+AP G LARG+Y V+SLFTDDD   HL WEW  
Sbjct: 158 LRVDKAIFMVGSYGPRAQEYEFVTSVEEAPRGALARGLYVVRSLFTDDDRLNHLSWEWHL 217

Query: 121 EIKKSWKD 128
            + + WKD
Sbjct: 218 HVCQDWKD 225

Inhibits GDP/GTP exchange reaction of RhoB. Interacts specifically with the GDP- and GTP-bound forms of post-translationally processed Rhob and Rhog proteins, both of which show a growth-regulated expression in mammalian cells. Stimulates the release of the GDP-bound but not the GTP-bound RhoB protein. Also inhibits the GDP/GTP exchange of RhoB but shows less ability to inhibit the dissociation of prebound GTP.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
380027813	1033	PREDICTED: HEAT repeat-containing protei	0.515	0.063	0.787	8e-27
350423063	1031	PREDICTED: HEAT repeat-containing protei	0.546	0.067	0.742	4e-26
91089445	200	PREDICTED: similar to rho guanine dissoc	0.546	0.35	0.771	5e-26
307182197	1043	HEAT repeat-containing protein 2 [Campon	0.546	0.067	0.771	6e-26
340727429	1031	PREDICTED: HEAT repeat-containing protei	0.546	0.067	0.742	6e-26
328775851	937	PREDICTED: HEAT repeat-containing protei	0.515	0.070	0.772	6e-26
383858014	963	PREDICTED: HEAT repeat-containing protei	0.515	0.068	0.772	9e-26
209180427	207	Rho GDP dissociation inhibitor [Acyrthos	0.546	0.338	0.771	1e-25
359843274	205	Rho GDP dissociation inhibitor [Schistoc	0.546	0.341	0.785	3e-25
332374808	203	unknown [Dendroctonus ponderosae]	0.531	0.334	0.794	4e-25

>gi|380027813|ref|XP_003697611.1| PREDICTED: HEAT repeat-containing protein 2-like [Apis florea]

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 52/66 (78%), Positives = 58/66 (87%)

Query: 63   VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
            VDKM+HMVGSYPP  E+QSYTTP EDAP+GM+ARG YSV SLFTDDD  EHLKWEW+FEI
Sbjct: 968  VDKMMHMVGSYPPKTEIQSYTTPTEDAPAGMVARGSYSVSSLFTDDDKHEHLKWEWSFEI 1027

Query: 123  KKSWKD 128
            KK WK+
Sbjct: 1028 KKDWKE 1033

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423063|ref|XP_003493373.1| PREDICTED: HEAT repeat-containing protein 2-like [Bombus impatiens]

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/70 (74%), Positives = 59/70 (84%)

Query: 59   LRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEW 118
            L   VDKM+HMVGSYPP  E+QSYTTP EDAP+G++ARG YSV SLFTDDD  EHLKWEW
Sbjct: 962  LGMPVDKMMHMVGSYPPKTEIQSYTTPTEDAPAGVMARGSYSVSSLFTDDDKHEHLKWEW 1021

Query: 119  TFEIKKSWKD 128
            +FEIKK WK+
Sbjct: 1022 SFEIKKDWKE 1031

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089445|ref|XP_966341.1| PREDICTED: similar to rho guanine dissociation factor isoform 1 [Tribolium castaneum] gi|91089447|ref|XP_975797.1| PREDICTED: similar to rho guanine dissociation factor isoform 2 [Tribolium castaneum] gi|270012573|gb|EFA09021.1| hypothetical protein TcasGA2_TC006730 [Tribolium castaneum]

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 60/70 (85%)

Query: 59  LRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEW 118
           L  +VDKM HMVGSY P +E+QSYTTPPEDAP+GMLARG Y+V SLFTDDD  EHLKWEW
Sbjct: 131 LGMSVDKMTHMVGSYAPKMEIQSYTTPPEDAPTGMLARGSYTVHSLFTDDDKNEHLKWEW 190

Query: 119 TFEIKKSWKD 128
           +FEIKK WKD
Sbjct: 191 SFEIKKDWKD 200

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182197|gb|EFN69531.1| HEAT repeat-containing protein 2 [Camponotus floridanus]

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/70 (77%), Positives = 57/70 (81%)

Query: 59   LRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEW 118
            L   VDKM HMVGSYPP  ELQSY TPPEDAPSG++ARG YSV SLFTDDD  EHLKWEW
Sbjct: 974  LGMPVDKMTHMVGSYPPKTELQSYITPPEDAPSGVVARGSYSVSSLFTDDDKHEHLKWEW 1033

Query: 119  TFEIKKSWKD 128
             FEIKK WK+
Sbjct: 1034 AFEIKKDWKE 1043

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727429|ref|XP_003402046.1| PREDICTED: HEAT repeat-containing protein 2-like [Bombus terrestris]

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 52/70 (74%), Positives = 59/70 (84%)

Query: 59   LRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEW 118
            L   VDKM+HMVGSYPP  E+QSYTTP EDAP+G++ARG YSV SLFTDDD  EHLKWEW
Sbjct: 962  LGMPVDKMMHMVGSYPPKTEIQSYTTPTEDAPAGVMARGSYSVSSLFTDDDKHEHLKWEW 1021

Query: 119  TFEIKKSWKD 128
            +FEIKK WK+
Sbjct: 1022 SFEIKKDWKE 1031

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328775851|ref|XP_393238.2| PREDICTED: HEAT repeat-containing protein 2 isoform 1 [Apis mellifera]

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 51/66 (77%), Positives = 57/66 (86%)

Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           VDKM+HMVGSYPP  E+QSYTTP EDAP+G +ARG YSV SLFTDDD  EHLKWEW+FEI
Sbjct: 872 VDKMMHMVGSYPPKTEIQSYTTPTEDAPAGKVARGSYSVSSLFTDDDKHEHLKWEWSFEI 931

Query: 123 KKSWKD 128
           KK WK+
Sbjct: 932 KKDWKE 937

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858014|ref|XP_003704498.1| PREDICTED: HEAT repeat-containing protein 2-like [Megachile rotundata]

 Score =  121 bits (303), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 51/66 (77%), Positives = 58/66 (87%)

Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           VDKM+HMVGSYPP  E+QSYTTP EDAP+G++ARG YSV SLFTDDD  EHLKWEW+FEI
Sbjct: 898 VDKMMHMVGSYPPKTEVQSYTTPTEDAPAGVMARGSYSVSSLFTDDDKHEHLKWEWSFEI 957

Query: 123 KKSWKD 128
           KK WK+
Sbjct: 958 KKDWKE 963

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|209180427|ref|NP_001129195.1| Rho GDP dissociation inhibitor [Acyrthosiphon pisum] gi|239788549|dbj|BAH70949.1| ACYPI002806 [Acyrthosiphon pisum]

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 58/70 (82%)

Query: 59  LRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEW 118
           L   VDKM HMVGSYPP +E+QSYTTP EDAPSGM+ARG Y+V SLFTDDD  EHLKWEW
Sbjct: 137 LGVPVDKMTHMVGSYPPKMEIQSYTTPAEDAPSGMMARGSYTVHSLFTDDDKKEHLKWEW 196

Query: 119 TFEIKKSWKD 128
            FEIKK WKD
Sbjct: 197 VFEIKKDWKD 206

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|359843274|gb|AEV89772.1| Rho GDP dissociation inhibitor [Schistocerca gregaria]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 58/70 (82%)

Query: 59  LRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEW 118
           L   VDKM HMVGSYPP  E+QSYTTPPEDAPSGM+ARG Y V SLFTDDD  EHLKWEW
Sbjct: 136 LGVPVDKMTHMVGSYPPKTEVQSYTTPPEDAPSGMVARGSYIVHSLFTDDDKHEHLKWEW 195

Query: 119 TFEIKKSWKD 128
           +FEIKK WKD
Sbjct: 196 SFEIKKDWKD 205

Source: Schistocerca gregaria

Species: Schistocerca gregaria

Genus: Schistocerca

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374808|gb|AEE62545.1| unknown [Dendroctonus ponderosae]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/68 (79%), Positives = 56/68 (82%)

Query: 61  FAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTF 120
             VDKM HMVGSY P  E+QSYTTP EDAPSGMLARG Y+V SLFTDDD  EHLKWEWTF
Sbjct: 136 ITVDKMTHMVGSYAPKTEIQSYTTPAEDAPSGMLARGSYTVHSLFTDDDKNEHLKWEWTF 195

Query: 121 EIKKSWKD 128
           EIKK WKD
Sbjct: 196 EIKKDWKD 203

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
FB|FBgn0036921	201	RhoGDI "RhoGDI" [Drosophila me	0.765	0.487	0.534	7e-22
UNIPROTKB|J3KRE2	129	ARHGDIA "Rho GDP-dissociation	0.757	0.751	0.479	3.5e-20
UNIPROTKB|P52565	204	ARHGDIA "Rho GDP-dissociation	0.515	0.323	0.590	2.8e-18
UNIPROTKB|F1P3P3	204	ARHGDIA "Uncharacterized prote	0.515	0.323	0.575	4.6e-18
UNIPROTKB|F1PL93	204	ARHGDIA "Uncharacterized prote	0.515	0.323	0.575	5.8e-18
MGI|MGI:2178103	204	Arhgdia "Rho GDP dissociation	0.515	0.323	0.575	5.8e-18
RGD|1359547	204	Arhgdia "Rho GDP dissociation	0.515	0.323	0.575	5.8e-18
UNIPROTKB|P19803	204	ARHGDIA "Rho GDP-dissociation	0.515	0.323	0.575	7.5e-18
ZFIN|ZDB-GENE-040426-2816	203	arhgdia "Rho GDP dissociation	0.796	0.502	0.438	2.5e-17
RGD|1305383	200	Arhgdib "Rho, GDP dissociation	0.781	0.5	0.456	8.6e-17

FB|FBgn0036921 RhoGDI "RhoGDI" [Drosophila melanogaster (taxid:7227)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 54/101 (53%), Positives = 65/101 (64%)

Query:    28 MLARGV-YSVQSLFTDDDDAEH-LKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTP 85
             ++  GV Y V+  F    +  H LK+V      L   VDKM HMVGSYPP  E+Q Y TP
Sbjct:   101 VIKEGVQYKVRIDFIVQREIVHGLKYVQKTSR-LGVNVDKMKHMVGSYPPKKEIQFYLTP 159

Query:    86 PEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEIKKSW 126
              E+APSG  +RG YSV S+FTDDD   HL+W+WTFEIKK W
Sbjct:   160 AEEAPSGTFSRGTYSVSSVFTDDDKHIHLEWDWTFEIKKDW 200

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|J3KRE2 ARHGDIA "Rho GDP-dissociation inhibitor 1" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 47/98 (47%), Positives = 59/98 (60%)

Query:    31 RGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAP 90
             + +  +Q L  DD+     K   L  + +  AVDK  +MVGSY P  E   + TP E+AP
Sbjct:    33 KSIQEIQELDKDDESLRKYKEALLGRVAVS-AVDKTDYMVGSYGPRAEEYEFLTPVEEAP 91

Query:    91 SGMLARGVYSVQSLFTDDDDAEHLKWEWTFEIKKSWKD 128
              GMLARG YS++S FTDDD  +HL WEW   IKK WKD
Sbjct:    92 KGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWKD 129

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|P52565 ARHGDIA "Rho GDP-dissociation inhibitor 1" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 39/66 (59%), Positives = 46/66 (69%)

Query:    63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
             +DK  +MVGSY P  E   + TP E+AP GMLARG YS++S FTDDD  +HL WEW   I
Sbjct:   139 IDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 198

Query:   123 KKSWKD 128
             KK WKD
Sbjct:   199 KKDWKD 204

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0001772 "immunological synapse" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=TAS

GO:0005856 "cytoskeleton" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0007162 "negative regulation of cell adhesion" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0050770 "regulation of axonogenesis" evidence=TAS

GO:0050771 "negative regulation of axonogenesis" evidence=TAS

GO:0050772 "positive regulation of axonogenesis" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1P3P3 ARHGDIA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 38/66 (57%), Positives = 46/66 (69%)

Query:    63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
             +DK  +MVGSY P  E   + TP E+AP GMLARG Y+++S FTDDD  +HL WEW   I
Sbjct:   139 IDKTEYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSKFTDDDKTDHLSWEWNLTI 198

Query:   123 KKSWKD 128
             KK WKD
Sbjct:   199 KKEWKD 204

GO:0005737 "cytoplasm" evidence=IEA

GO:0001772 "immunological synapse" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

UNIPROTKB|F1PL93 ARHGDIA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 38/66 (57%), Positives = 46/66 (69%)

Query:    63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
             +DK  +MVGSY P  E   + TP E+AP GMLARG Y+++S FTDDD  +HL WEW   I
Sbjct:   139 IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEWNLTI 198

Query:   123 KKSWKD 128
             KK WKD
Sbjct:   199 KKEWKD 204

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0001772 "immunological synapse" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:2178103 Arhgdia "Rho GDP dissociation inhibitor (GDI) alpha" [Mus musculus (taxid:10090)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 38/66 (57%), Positives = 46/66 (69%)

Query:    63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
             +DK  +MVGSY P  E   + TP E+AP GMLARG Y+++S FTDDD  +HL WEW   I
Sbjct:   139 IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEWNLTI 198

Query:   123 KKSWKD 128
             KK WKD
Sbjct:   199 KKEWKD 204

GO:0001772 "immunological synapse" evidence=IDA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IDA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IDA

GO:0032880 "regulation of protein localization" evidence=IDA

GO:0050790 "regulation of catalytic activity" evidence=IDA

RGD|1359547 Arhgdia "Rho GDP dissociation inhibitor (GDI) alpha" [Rattus norvegicus (taxid:10116)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 38/66 (57%), Positives = 46/66 (69%)

Query:    63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
             +DK  +MVGSY P  E   + TP E+AP GMLARG Y+++S FTDDD  +HL WEW   I
Sbjct:   139 IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEWNLTI 198

Query:   123 KKSWKD 128
             KK WKD
Sbjct:   199 KKEWKD 204

GO:0001772 "immunological synapse" evidence=IEA;ISO

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISO

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA;ISO

GO:0032880 "regulation of protein localization" evidence=IEA;ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

UNIPROTKB|P19803 ARHGDIA "Rho GDP-dissociation inhibitor 1" [Bos taurus (taxid:9913)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 38/66 (57%), Positives = 46/66 (69%)

Query:    63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
             +DK  +MVGSY P  E   + TP E+AP GMLARG Y+++S FTDDD  +HL WEW   I
Sbjct:   139 IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTI 198

Query:   123 KKSWKD 128
             KK WKD
Sbjct:   199 KKEWKD 204

GO:0001772 "immunological synapse" evidence=ISS

GO:0007266 "Rho protein signal transduction" evidence=ISS

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

ZFIN|ZDB-GENE-040426-2816 arhgdia "Rho GDP dissociation inhibitor (GDI) alpha" [Danio rerio (taxid:7955)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 46/105 (43%), Positives = 61/105 (58%)

Query:    26 SGMLARGV-YSVQSLF-TDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYT 83
             S +L  GV Y ++  F  + +    LK+V          +DK  +MVGSY P  +   + 
Sbjct:   100 SFILKEGVEYRIKISFKVNKEIVSGLKYVQQTFRK-GVRIDKSDYMVGSYGPRPDEYEFL 158

Query:    84 TPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEIKKSWKD 128
             TP E+AP GMLARG Y+++S FTDDD  +HL WEW   IKK WKD
Sbjct:   159 TPLEEAPKGMLARGTYNLKSKFTDDDKHDHLSWEWNLNIKKDWKD 203

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

RGD|1305383 Arhgdib "Rho, GDP dissociation inhibitor (GDI) beta" [Rattus norvegicus (taxid:10116)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 47/103 (45%), Positives = 56/103 (54%)

Query:    28 MLARGV-YSVQSLF-TDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTP 85
             +L  G+ Y V+  F  + D    LK+V          VDK   MVGSY P  E   + TP
Sbjct:    99 VLKEGIEYRVKINFKVNKDIVSGLKYVQQTYRN-GMKVDKATFMVGSYGPRPEEYEFLTP 157

Query:    86 PEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEIKKSWKD 128
              E+AP GMLARG Y  +S FTDDD  +HL WEW   IKK W D
Sbjct:   158 VEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNLAIKKDWTD 200

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5XI73	GDIR1_RAT	No assigned EC number	0.5757	0.5156	0.3235	yes	N/A
Q99PT1	GDIR1_MOUSE	No assigned EC number	0.5757	0.5156	0.3235	yes	N/A
Q95UQ1	GDIR1_DICDI	No assigned EC number	0.5238	0.4687	0.3045	yes	N/A
P52565	GDIR1_HUMAN	No assigned EC number	0.5909	0.5156	0.3235	yes	N/A
P19803	GDIR1_BOVIN	No assigned EC number	0.5757	0.5156	0.3235	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	128
pfam02115	200	pfam02115, Rho_GDI, RHO protein GDP dissociation i	2e-30
pfam02115	200	pfam02115, Rho_GDI, RHO protein GDP dissociation i	4e-21

>gnl|CDD|216881 pfam02115, Rho_GDI, RHO protein GDP dissociation inhibitor

 Score =  107 bits (269), Expect = 2e-30
 Identities = 39/64 (60%), Positives = 43/64 (67%)

Query: 62  AVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFE 121
            VDK  +MVGSY P  E   Y TP E+APSG LARG YS +S FTDDD  +HL WEW  E
Sbjct: 137 RVDKTKYMVGSYGPRAEEYEYLTPEEEAPSGALARGSYSAKSKFTDDDKTDHLSWEWNLE 196

Query: 122 IKKS 125
           IKK 
Sbjct: 197 IKKD 200

Length = 200

>gnl|CDD|216881 pfam02115, Rho_GDI, RHO protein GDP dissociation inhibitor

 Score = 83.5 bits (207), Expect = 4e-21
 Identities = 30/51 (58%), Positives = 34/51 (66%)

Query: 1   MVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
             +MVGSY P  E   Y TP E+APSG LARG YS +S FTDDD  +HL W
Sbjct: 141 TKYMVGSYGPRAEEYEYLTPEEEAPSGALARGSYSAKSKFTDDDKTDHLSW 191

Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
KOG3205|consensus	200		100.0
PF02115	200	Rho_GDI: RHO protein GDP dissociation inhibitor; I	100.0
KOG3205|consensus	200		99.83
PF02115	200	Rho_GDI: RHO protein GDP dissociation inhibitor; I	99.73
PF02221	134	E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The	84.56
cd00917	122	PG-PI_TP The phosphatidylinositol/phosphatidylglyc	84.48
PF07504	51	FTP: Fungalysin/Thermolysin Propeptide Motif; Inte	81.62
PF05351	157	GMP_PDE_delta: GMP-PDE, delta subunit; InterPro: I	80.38

>KOG3205|consensus

Probab=100.00  E-value=5e-44  Score=279.64  Aligned_cols=114  Identities=39%  Similarity=0.658  Sum_probs=104.7

Q ss_pred             CCCcccCCCCCCC--ccceE----EEEEEEEEEEEEcCC-CceeEEEEEeeecceeEeecccceeeeeCCCCCCeeecCC
Q psy9193          13 ELQSYTTPPEDAP--SGMLA----RGVYSVQSLFTDDDD-AEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTP   85 (128)
Q Consensus        13 ~~~~~~~p~eeaP--sG~l~----rg~Ysvk~~F~ddd~-v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~~   85 (128)
                      ++.++.++.+-.|  ++..+    .+.|+++|.|+|++. ++||+|.|+ |+|.||+|||+.+|||||+|++|+|++.+|
T Consensus        80 ~pi~ldlt~~~~~~~k~~~f~iKEGs~Y~lki~F~Vq~eIvSGLrY~q~-v~r~Gv~VDk~~~MlGSy~P~~e~ye~~~p  158 (200)
T KOG3205|consen   80 PPIVLDLTGDLSPELKKQWFTIKEGSEYRLKISFRVQREIVSGLRYVQT-VYRTGVKVDKTKYMLGSYGPQAEPYEFVTP  158 (200)
T ss_pred             CCeEEeCCCCccccccCceEEeecCcEEEEEEEEEEeeheeccceeeeE-EeecceEEeehhhhcccCCCCCcceeeeCC
Confidence            3455666666666  78777    379999999999966 799999999 599999999999999999999999999999


Q ss_pred             CCCCCccceeeeeeeeEEEEEeCCCCcEEEEEeceeeecCCC
Q psy9193          86 PEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEIKKSWK  127 (128)
Q Consensus        86 ~eeaPsG~laRG~Y~a~s~f~DdD~~~~l~~ew~feI~K~W~  127 (128)
                      +|||||||||||+|.|+|+|+|||+++||+|+|+|+|+|+|.
T Consensus       159 ~eeAPsGmlaRG~Ys~~skF~DDDk~~hLe~~w~~~I~K~W~  200 (200)
T KOG3205|consen  159 EEEAPSGMLARGSYSAKSKFTDDDKTCHLEWNWTFDIKKEWK  200 (200)
T ss_pred             cccCCccceeecceeeeeEEecCCCceEEEEEEEEEEeeccC
Confidence            999999999999999999999999999999999999999995

>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them

Probab=100.00  E-value=1.7e-41  Score=267.63  Aligned_cols=93  Identities=45%  Similarity=0.755  Sum_probs=84.3

Q ss_pred             EEEEEEEEEEEcCC-CceeEEEEEeeecceeEeecccceeeeeCCCCCCeeecCCCCCCCccceeeeeeeeEEEEEeCCC
Q psy9193          32 GVYSVQSLFTDDDD-AEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDD  110 (128)
Q Consensus        32 g~Ysvk~~F~ddd~-v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~f~DdD~  110 (128)
                      ++|+++++|+|++. ++||+|+|+ |||+||+||+++.|||||+|++++|+++||+|+|||||||||+|+|+|+|+|||+
T Consensus       107 s~Y~l~i~F~V~~~ivsGL~Y~q~-Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~aks~f~DdD~  185 (200)
T PF02115_consen  107 SKYRLKITFKVQHEIVSGLKYVQT-VKRKGIPVDKREEMIGSYAPQTEPYEKTFPEEEAPSGMLARGSYTAKSKFVDDDK  185 (200)
T ss_dssp             -EEEEEEEEEE-SS-EEEEEEEEE-EEETTEEEEEEEEEEEEE--ESSEEEEEEEEEE--BSTTT-EEEEEEEEEEETTS
T ss_pred             CEEEEEEEEEECCccccCcEEEEE-EEECCEeEcccceeeeccCCCCcceEEeCcCccCCCceeEeeeeeEEEEEEeCCC
Confidence            79999999999987 799999999 6999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEeceeeecC
Q psy9193         111 AEHLKWEWTFEIKKS  125 (128)
Q Consensus       111 ~~~l~~ew~feI~K~  125 (128)
                      ++||+|+|+|+|+|+
T Consensus       186 ~~~l~~~w~feI~Kd  200 (200)
T PF02115_consen  186 NVHLEWEWSFEIKKD  200 (200)
T ss_dssp             SECEEEEEEEEEESS
T ss_pred             cEEEEEEEEEEEecC
Confidence            999999999999996

The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....

>KOG3205|consensus

Probab=99.83  E-value=3.8e-21  Score=150.98  Aligned_cols=55  Identities=53%  Similarity=0.828  Sum_probs=52.9

Q ss_pred             CcceeeecCCCCCCCcccCCCCCCCccceEEEEEEEEEEEEEcCCCceeEEEEEe
Q psy9193           1 MVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLI   55 (128)
Q Consensus         1 ~~~m~Gsy~P~~~~~~~~~p~eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~   55 (128)
                      +.+|||||+|++|+|.|.+|+||||+||||||+|+++++|+|||+.+||.|.|.+
T Consensus       139 ~~~MlGSy~P~~e~ye~~~p~eeAPsGmlaRG~Ys~~skF~DDDk~~hLe~~w~~  193 (200)
T KOG3205|consen  139 TKYMLGSYGPQAEPYEFVTPEEEAPSGMLARGSYSAKSKFTDDDKTCHLEWNWTF  193 (200)
T ss_pred             hhhhcccCCCCCcceeeeCCcccCCccceeecceeeeeEEecCCCceEEEEEEEE
Confidence            3689999999999999999999999999999999999999999999999999985

>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them

Probab=99.73  E-value=9.3e-19  Score=138.50  Aligned_cols=54  Identities=50%  Similarity=0.801  Sum_probs=47.0

Q ss_pred             cceeeecCCCCCCCcccCCCCCCCccceEEEEEEEEEEEEEcCCCceeEEEEEe
Q psy9193           2 VHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLI   55 (128)
Q Consensus         2 ~~m~Gsy~P~~~~~~~~~p~eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~   55 (128)
                      ++|||||+|++++|++++|+|+||+||||||+|+|+++|+|||+.+||.|.|.+
T Consensus       142 ~~miGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~aks~f~DdD~~~~l~~~w~f  195 (200)
T PF02115_consen  142 EEMIGSYAPQTEPYEKTFPEEEAPSGMLARGSYTAKSKFVDDDKNVHLEWEWSF  195 (200)
T ss_dssp             EEEEEEE--ESSEEEEEEEEEE--BSTTT-EEEEEEEEEEETTSSECEEEEEEE
T ss_pred             ceeeeccCCCCcceEEeCcCccCCCceeEeeeeeEEEEEEeCCCcEEEEEEEEE
Confidence            579999999999999999999999999999999999999999999999999975

The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....

>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products

Probab=84.56  E-value=11  Score=26.28  Aligned_cols=86  Identities=23%  Similarity=0.294  Sum_probs=52.8

Q ss_pred             EEEEEEEEEEEEc-CCCceeEEEEEeeecce-eEeecc----c-ceeee---eC---CCC--CC--eeecCC-CCCCCcc
Q psy9193          31 RGVYSVQSLFTDD-DDAEHLKWVTLILLPLR-FAVDKM----V-HMVGS---YP---PSL--EL--QSYTTP-PEDAPSG   92 (128)
Q Consensus        31 rg~Ysvk~~F~dd-d~v~~L~y~q~~Vkr~G-i~Vdk~----~-~miGs---y~---P~~--e~--y~~~~~-~eeaPsG   92 (128)
                      .+.+++++.|... +...+++..-. ++-.| ++|.-.    . ..-..   ..   |-.  +.  |.+.++ +...|.|
T Consensus        31 g~~~~i~~~f~~~~~~~~~~~~~v~-~~~~g~~~ip~~g~~~~~d~C~~~~~~~~~CPi~~G~~~~~~~~~~i~~~~p~~  109 (134)
T PF02221_consen   31 GQPVTITIDFNTSKKDSDGLKVKVE-AKVGGWIPIPFPGLCEYYDLCDNLFGNGLSCPIKAGEYYTYTYTIPIPKIYPPG  109 (134)
T ss_dssp             TSEEEEEEEEEECSSBBSSEEEEEE-EEETTEEEEEEESSSCEEEEEGTSCCSSTTSTBTTTEEEEEEEEEEESTTSSSE
T ss_pred             CCEEEEEEEEEEccccccCCEEEEE-EEECCcEEEccccccCccchhhhcccccccCccCCCcEEEEEEEEEcccceeeE
Confidence            3699999999555 44778877544 46676 776554    2 12110   11   322  22  333333 3555555


Q ss_pred             ceeeeeeeeEEEEEeCCCCcEEEEEeceee
Q psy9193          93 MLARGVYSVQSLFTDDDDAEHLKWEWTFEI  122 (128)
Q Consensus        93 ~laRG~Y~a~s~f~DdD~~~~l~~ew~feI  122 (128)
                           +|+++-+++|+++...+=++-.++|
T Consensus       110 -----~~~i~~~l~d~~~~~i~C~~~~v~I  134 (134)
T PF02221_consen  110 -----KYTIQWKLTDQDGEEIACFEFPVKI  134 (134)
T ss_dssp             -----EEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             -----EEEEEEEEEeCCCCEEEEEEEEeEC
Confidence                 9999999999998777666655554

It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....

>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure

Probab=84.48  E-value=9.3  Score=27.36  Aligned_cols=82  Identities=16%  Similarity=0.045  Sum_probs=50.2

Q ss_pred             ceEEEEEEEEEEEEEcCCCce-eEEEEEeeecceeEeeccccee-------eeeCCCC---CCeeecCCCCCCCccceee
Q psy9193          28 MLARGVYSVQSLFTDDDDAEH-LKWVTLILLPLRFAVDKMVHMV-------GSYPPSL---ELQSYTTPPEDAPSGMLAR   96 (128)
Q Consensus        28 ~l~rg~Ysvk~~F~ddd~v~~-L~y~q~~Vkr~Gi~Vdk~~~mi-------Gsy~P~~---e~y~~~~~~eeaPsG~laR   96 (128)
                      +...+..++.+.|+.+..+.. +.-.=. ++-.||++-....-+       |--=|=.   ..+..+   -+.| .++-.
T Consensus        24 ~~~G~~~ti~~~~~~~~~v~~g~~~~v~-~~~~~i~~~~~~~DlC~~~~~~g~~CPi~~G~~~~~~~---~~ip-~~~P~   98 (122)
T cd00917          24 PAAGQNLTIEASGSVGKEIEDGAYVVVE-VKYGFIRLLSETYDLCDETKNVDLSCPIEPGDKFLTKL---VDLP-GEIPP   98 (122)
T ss_pred             cCCCCcEEEEEEEEECcCcCCCCEEEEE-EEECCEEeecccCCcccccccCCCcCCcCCCcEEEEEE---eeCC-CCCCC
Confidence            444579999999999988764 454434 588898876433311       2111322   122222   2333 44555


Q ss_pred             eeeeeEEEEEeCCCCcEE
Q psy9193          97 GVYSVQSLFTDDDDAEHL  114 (128)
Q Consensus        97 G~Y~a~s~f~DdD~~~~l  114 (128)
                      |+|.++.++.|+|+..+.
T Consensus        99 g~y~v~~~l~d~~~~~i~  116 (122)
T cd00917          99 GKYTVSARAYTKDDEEIT  116 (122)
T ss_pred             ceEEEEEEEECCCCCEEE
Confidence            899999999998775543

These proteins belong to the ML domain family.

>PF07504 FTP: Fungalysin/Thermolysin Propeptide Motif; InterPro: IPR011096 The FTP domain is found in the propeptide region of bacterial and fungal metallopeptidases belonging to MEROPS peptidase families M4 and M36 respectively

Probab=81.62  E-value=4.1  Score=24.85  Aligned_cols=35  Identities=20%  Similarity=0.181  Sum_probs=24.8

Q ss_pred             EEEEEEEEEEcCCCceeEEEEEeeecceeEeeccccee
Q psy9193          33 VYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMV   70 (128)
Q Consensus        33 ~Ysvk~~F~ddd~v~~L~y~q~~Vkr~Gi~Vdk~~~mi   70 (128)
                      .|++....+|..+..+.+|.|.+   .||+|.-.+..+
T Consensus         1 ~l~~~~~~~d~~G~~~vr~qQ~~---~GvpV~g~~~~v   35 (51)
T PF07504_consen    1 DLKVTSVTTDKNGKTHVRYQQYY---NGVPVYGGELIV   35 (51)
T ss_dssp             -EEEEEEEE-TTSEEEEEEEEEE---TTEEB-S--EEE
T ss_pred             CcEEEEEEECCCCCEEEEEEEEE---CCEEEeCCEEEE
Confidence            36778888888778999999986   899987766544

In bacteria the FTP domain is N-terminal to this entry, the PepSY domain; in fungi the M36 peptidases do not contain the PepSY domain. Propeptide swapping experiments have shown that the propeptides of the M4 and M36 families are not functionally interchangeable []. The function of the propeptide in M36 peptidases has not been described, but it is likely, as in other related peptidases, to have targeting, chaperone activity and to inhibit peptidase activity, so as to prevent premature activation [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding; PDB: 3NQY_A 3NQZ_A.

>PF05351 GMP_PDE_delta: GMP-PDE, delta subunit; InterPro: IPR008015 GMP-PDE delta subunit was originally identified as a fourth subunit of rod-specific cGMP phosphodiesterase (PDE) (3

Probab=80.38  E-value=3.7  Score=31.84  Aligned_cols=81  Identities=17%  Similarity=0.242  Sum_probs=57.0

Q ss_pred             ceEEEEEEEEEEEEE-cCCCceeEEEEEeeecceeEeecccceeeeeCCCCC---CeeecCC--CCCCCccceeeeee--
Q psy9193          28 MLARGVYSVQSLFTD-DDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLE---LQSYTTP--PEDAPSGMLARGVY--   99 (128)
Q Consensus        28 ~l~rg~Ysvk~~F~d-dd~v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e---~y~~~~~--~eeaPsG~laRG~Y--   99 (128)
                      +|-.-+=..++.|.+ ++.+.+++.+|. ++=+|-.+..=..-.|==-|++.   .+.+.+|  .+..|.-|| .|.|  
T Consensus        57 ~L~~k~V~~~i~Fsvg~~pv~nFRmier-hyF~~~llk~~dF~FGFcIP~S~NTwE~iye~p~l~~~l~~~mi-~gp~et  134 (157)
T PF05351_consen   57 FLKLKTVGREIEFSVGDEPVNNFRMIER-HYFRDQLLKSFDFEFGFCIPNSTNTWEHIYEFPPLSQMLPAEMI-SGPYET  134 (157)
T ss_dssp             GGG-SEEEEEEEEEE-SS-ECCEEEEEE-EEETTEEEEEEEEEEEEE-TTCEEEEEEEEEB--CSCCHHHHHH-CTTTTE
T ss_pred             HhcchhheEEEEEEECceeccccEeeEe-eeecCceeeEEEeeeeeEcCCCccceeEEEEcCCCCchhHHHHH-cCCCcc
Confidence            343355678999999 666999999999 59888888888888887779964   4555565  334444444 4766  


Q ss_pred             eeEEEEEeCCC
Q psy9193         100 SVQSLFTDDDD  110 (128)
Q Consensus       100 ~a~s~f~DdD~  110 (128)
                      ..-|.|.+||+
T Consensus       135 ~sdSfyfv~~~  145 (157)
T PF05351_consen  135 KSDSFYFVDDK  145 (157)
T ss_dssp             EEEEEEEETTE
T ss_pred             eEEEEEEeCCE
Confidence            57778888887

1.4.35 from EC). The precise function of PDE delta subunit in the rod specific GMP-PDE complex is unclear. In addition, PDE delta subunit is not confined to photoreceptor cells but is widely distributed in different tissues. PDE delta subunit is thought to be a specific soluble transport factor for certain prenylated proteins and Arl2-GTP a regulator of PDE-mediated transport [].; PDB: 3RBQ_B 3GQQ_C 3T5I_A 3T5G_B 1KSG_B 1KSJ_B 1KSH_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	128
1fso_A	139	Crystal Structure Of Truncated Human Rhogdi Quadrup		5e-19
1cc0_E	204	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		1e-18
1ft0_A	139	Crystal Structure Of Truncated Human Rhogdi K113a M		2e-18
1fst_A	182	Crystal Structure Of Truncated Human Rhogdi Triple		2e-18
4f38_B	204	Crystal Structure Of Geranylgeranylated Rhoa In Com		3e-18
1doa_B	219	Structure Of The Rho Family Gtp-Binding Protein Cdc		3e-18
1ajw_A	145	Structure Of Rhogdi: A C-Terminal Binding Domain Ta		4e-18
1kmt_A	141	Crystal Structure Of Rhogdi Glu(154,155)ala Mutant		5e-18
1qvy_A	139	Crystal Structure Of Rhogdi K(199,200)r Double Muta		6e-18
2jhz_A	138	Crystal Structure Of Rhogdi E155s, E157s Mutant Len		8e-18
1ft3_A	139	Crystal Structure Of Truncated Rhogdi K141a Mutant		8e-18
2jhw_A	138	Crystal Structure Of Rhogdi E155a, E157a Mutant Len		1e-17
2bxw_A	141	Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mut		1e-17
2jhx_A	138	Crystal Structure Of Rhogdi E155h, E157h Mutant Len		3e-17
2jhu_A	138	Crystal Structure Of Rhogdi E154a,E155a Mutant Leng		8e-17
2jht_A	138	Crystal Structure Of Rhogdi K135t,K138t,K141t Mutan		1e-16
2jhs_A	138	Crystal Structure Of Rhogdi K135h,K138h,K141h Mutan		2e-16
2ji0_A	138	Crystal Structure Of Rhogdi K138y, K141y Mutant Len		2e-16
1ds6_B	180	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-16
1rho_A	145	Structure Of Rho Guanine Nucleotide Dissociation In		2e-16

>pdb|1FSO|A Chain A, Crystal Structure Of Truncated Human Rhogdi Quadruple Mutant Length = 139

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 47/67 (70%)
Query: 62  AVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFE 121
           A+D   +MVGSY P  E   + TP E+AP GMLARG YS++S FTDDD  +HL WEW F 
Sbjct: 73  AIDATDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNFT 132
Query: 122 IKKSWKD 128
           IKK WKD
Sbjct: 133 IKKDWKD 139

>pdb|1CC0|E Chain E, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 204

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 46/66 (69%)
Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P  E   + TP E+AP GMLARG YS++S FTDDD  +HL WEW   I
Sbjct: 139 IDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 198
Query: 123 KKSWKD 128
           KK WKD
Sbjct: 199 KKDWKD 204

>pdb|1FT0|A Chain A, Crystal Structure Of Truncated Human Rhogdi K113a Mutant Length = 139

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 46/66 (69%)
Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P  E   + TP E+AP GMLARG YS++S FTDDD  +HL WEW   I
Sbjct: 74  IDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 133
Query: 123 KKSWKD 128
           KK WKD
Sbjct: 134 KKDWKD 139

>pdb|1FST|A Chain A, Crystal Structure Of Truncated Human Rhogdi Triple Mutant Length = 182

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 46/67 (68%)
Query: 62  AVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFE 121
           A+D   +MVGSY P  E   + TP E+AP GMLARG YS++S FTDDD  +HL WEW   
Sbjct: 116 AIDATDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLT 175
Query: 122 IKKSWKD 128
           IKK WKD
Sbjct: 176 IKKDWKD 182

>pdb|4F38|B Chain B, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 204

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 46/66 (69%)
Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P  E   + TP E+AP GMLARG Y+++S FTDDD  +HL WEW   I
Sbjct: 139 IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTI 198
Query: 123 KKSWKD 128
           KK WKD
Sbjct: 199 KKEWKD 204

>pdb|1DOA|B Chain B, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 219

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 46/66 (69%)
Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P  E   + TP E+AP GMLARG Y+++S FTDDD  +HL WEW   I
Sbjct: 154 IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTI 213
Query: 123 KKSWKD 128
           KK WKD
Sbjct: 214 KKEWKD 219

>pdb|1AJW|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets An N-Terminal Inhibitory Peptide To Gtpases, Nmr, 20 Structures Length = 145

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 46/66 (69%)
Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P  E   + TP E+AP GMLARG Y+++S FTDDD  +HL WEW   I
Sbjct: 80  IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTI 139
Query: 123 KKSWKD 128
           KK WKD
Sbjct: 140 KKEWKD 145

>pdb|1KMT|A Chain A, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant Length = 141

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 45/66 (68%)
Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P      + TP E+AP GMLARG YS++S FTDDD  +HL WEW   I
Sbjct: 76  IDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 135
Query: 123 KKSWKD 128
           KK WKD
Sbjct: 136 KKDWKD 141

>pdb|1QVY|A Chain A, Crystal Structure Of Rhogdi K(199,200)r Double Mutant Length = 139

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 46/66 (69%)
Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P  E   + TP E+AP GMLARG YS++S FTDDD  +HL WEW   I
Sbjct: 74  IDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 133
Query: 123 KKSWKD 128
           ++ WKD
Sbjct: 134 RRDWKD 139

>pdb|2JHZ|A Chain A, Crystal Structure Of Rhogdi E155s, E157s Mutant Length = 138

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 45/64 (70%)
Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P  E  S+ TP E+AP GMLARG YS++S FTDDD  +HL WEW   I
Sbjct: 75  IDKTDYMVGSYGPRAESYSFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 134
Query: 123 KKSW 126
           KK W
Sbjct: 135 KKDW 138

>pdb|1FT3|A Chain A, Crystal Structure Of Truncated Rhogdi K141a Mutant Length = 139

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 45/66 (68%)
Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +D   +MVGSY P  E   + TP E+AP GMLARG YS++S FTDDD  +HL WEW   I
Sbjct: 74  IDATDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 133
Query: 123 KKSWKD 128
           KK WKD
Sbjct: 134 KKDWKD 139

>pdb|2JHW|A Chain A, Crystal Structure Of Rhogdi E155a, E157a Mutant Length = 138

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 45/64 (70%)
Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P  E  ++ TP E+AP GMLARG YS++S FTDDD  +HL WEW   I
Sbjct: 75  IDKTDYMVGSYGPRAEAYAFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 134
Query: 123 KKSW 126
           KK W
Sbjct: 135 KKDW 138

>pdb|2BXW|A Chain A, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant Length = 141

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 45/66 (68%)
Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +D   +MVGSY P  E   + TP E+AP GMLARG YS++S FTDDD  +HL WEW   I
Sbjct: 76  IDYTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 135
Query: 123 KKSWKD 128
           KK WKD
Sbjct: 136 KKDWKD 141

>pdb|2JHX|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant Length = 138

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 44/64 (68%)
Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P  E   + TP E+AP GMLARG YS++S FTDDD  +HL WEW   I
Sbjct: 75  IDKTDYMVGSYGPRAEHYHFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 134
Query: 123 KKSW 126
           KK W
Sbjct: 135 KKDW 138

>pdb|2JHU|A Chain A, Crystal Structure Of Rhogdi E154a,E155a Mutant Length = 138

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 43/64 (67%)
Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P      + TP E+AP GMLARG YS++S FTDDD  +HL WEW   I
Sbjct: 75  IDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 134
Query: 123 KKSW 126
           KK W
Sbjct: 135 KKDW 138

>pdb|2JHT|A Chain A, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant Length = 138

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 62  AVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFE 121
            +D   +MVGSY P  E   + TP E+AP GMLARG YS++S FTDDD  +HL WEW   
Sbjct: 74  TIDTTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLT 133
Query: 122 IKKSW 126
           IKK W
Sbjct: 134 IKKDW 138

>pdb|2JHS|A Chain A, Crystal Structure Of Rhogdi K135h,K138h,K141h Mutant Length = 138

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 43/64 (67%)
Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +D   +MVGSY P  E   + TP E+AP GMLARG YS++S FTDDD  +HL WEW   I
Sbjct: 75  IDHTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 134
Query: 123 KKSW 126
           KK W
Sbjct: 135 KKDW 138

>pdb|2JI0|A Chain A, Crystal Structure Of Rhogdi K138y, K141y Mutant Length = 138

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 43/64 (67%)
Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +D   +MVGSY P  E   + TP E+AP GMLARG YS++S FTDDD  +HL WEW   I
Sbjct: 75  IDYTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 134
Query: 123 KKSW 126
           KK W
Sbjct: 135 KKDW 138

>pdb|1DS6|B Chain B, Crystal Structure Of A Rac-Rhogdi Complex Length = 180

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 41/64 (64%)
Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           VDK   MVGSY P  E   + TP E+AP GMLARG Y  +S FTDDD  +HL WEW   I
Sbjct: 115 VDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSI 174
Query: 123 KKSW 126
           KK W
Sbjct: 175 KKEW 178

>pdb|1RHO|A Chain A, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor Length = 145

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  + VGSY P  E   + TP E+AP G LARG YS++S FTDDD  +HL WEW   I
Sbjct: 81  IDKTDYXVGSYGPRAEEYEFLTPVEEAPKGXLARGSYSIKSRFTDDDKTDHLSWEWNLTI 140
Query: 123 KKSWK 127
           KK WK
Sbjct: 141 KKDWK 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	128
1kmt_A	141	RHO GDP-dissociation inhibitor 1; immunoglobulin f	5e-32
1kmt_A	141	RHO GDP-dissociation inhibitor 1; immunoglobulin f	1e-19
1ds6_B	180	RHO GDP-dissociation inhibitor 2; beta sandwhich,	2e-30
1ds6_B	180	RHO GDP-dissociation inhibitor 2; beta sandwhich,	3e-18
1doa_B	219	RHO GDI 1, protein (GDP-dissociation inhibitor 1);	2e-29
1doa_B	219	RHO GDI 1, protein (GDP-dissociation inhibitor 1);	1e-17

>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A Length = 141

 Score =  109 bits (273), Expect = 5e-32
 Identities = 38/66 (57%), Positives = 45/66 (68%)

Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P      + TP E+AP GMLARG YS++S FTDDD  +HL WEW   I
Sbjct: 76  IDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 135

Query: 123 KKSWKD 128
           KK WKD
Sbjct: 136 KKDWKD 141

>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A Length = 141

 Score = 77.6 bits (191), Expect = 1e-19
 Identities = 28/51 (54%), Positives = 34/51 (66%)

Query: 1   MVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
             +MVGSY P      + TP E+AP GMLARG YS++S FTDDD  +HL W
Sbjct: 79  TDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 129

>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A Length = 180

 Score =  106 bits (266), Expect = 2e-30
 Identities = 37/66 (56%), Positives = 42/66 (63%)

Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           VDK   MVGSY P  E   + TP E+AP GMLARG Y  +S FTDDD  +HL WEW   I
Sbjct: 115 VDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSI 174

Query: 123 KKSWKD 128
           KK W +
Sbjct: 175 KKEWGE 180

>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A Length = 180

 Score = 75.0 bits (184), Expect = 3e-18
 Identities = 28/51 (54%), Positives = 32/51 (62%)

Query: 1   MVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
              MVGSY P  E   + TP E+AP GMLARG Y  +S FTDDD  +HL W
Sbjct: 118 ATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSW 168

>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E* Length = 219

 Score =  105 bits (262), Expect = 2e-29
 Identities = 38/66 (57%), Positives = 46/66 (69%)

Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P  E   + TP E+AP GMLARG Y+++S FTDDD  +HL WEW   I
Sbjct: 154 IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTI 213

Query: 123 KKSWKD 128
           KK WKD
Sbjct: 214 KKEWKD 219

>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E* Length = 219

 Score = 74.4 bits (182), Expect = 1e-17
 Identities = 28/49 (57%), Positives = 35/49 (71%)

Query: 3   HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
           +MVGSY P  E   + TP E+AP GMLARG Y+++S FTDDD  +HL W
Sbjct: 159 YMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSW 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
1kmt_A	141	RHO GDP-dissociation inhibitor 1; immunoglobulin f	100.0
1ds6_B	180	RHO GDP-dissociation inhibitor 2; beta sandwhich,	100.0
1doa_B	219	RHO GDI 1, protein (GDP-dissociation inhibitor 1);	100.0
1kmt_A	141	RHO GDP-dissociation inhibitor 1; immunoglobulin f	99.82
1ds6_B	180	RHO GDP-dissociation inhibitor 2; beta sandwhich,	99.79
1doa_B	219	RHO GDI 1, protein (GDP-dissociation inhibitor 1);	99.78
3t5g_B	152	Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic	90.58

>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A

Probab=100.00  E-value=5.2e-47  Score=284.26  Aligned_cols=102  Identities=40%  Similarity=0.706  Sum_probs=95.0

Q ss_pred             ccceE----EEEEEEEEEEEEcCC-CceeEEEEEeeecceeEeecccceeeeeCCCCCCeeecCCCCCCCccceeeeeee
Q psy9193          26 SGMLA----RGVYSVQSLFTDDDD-AEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYS  100 (128)
Q Consensus        26 sG~l~----rg~Ysvk~~F~ddd~-v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~  100 (128)
                      +...+    .+.|+++++|+|+++ ++||+|+|+ |||+||+||++++|||||+|++++|+++||+|||||||||||+|+
T Consensus        35 k~~~f~iKEG~~Y~iki~F~V~~eivsGLkY~q~-v~r~Gi~Vdk~~~mlGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~  113 (141)
T 1kmt_A           35 KKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQH-TYRKGVKIDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYS  113 (141)
T ss_dssp             GGCCEEEETTCEEEEEEEEEECSSCEEEEEEEEE-EEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEE
T ss_pred             ccCceEccCCcEEEEEEEEEEccccccCcEEEEE-EEECCEEECcceEeeeccCCCCCcceecCCCccCCceeEEeeeee
Confidence            44544    389999999999966 799999999 699999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeCCCCcEEEEEeceeeecCCCC
Q psy9193         101 VQSLFTDDDDAEHLKWEWTFEIKKSWKD  128 (128)
Q Consensus       101 a~s~f~DdD~~~~l~~ew~feI~K~W~~  128 (128)
                      |+|+|+|||+++||+|+|+|+|+|+|+|
T Consensus       114 a~s~F~DDD~~~hl~~~w~feI~KdW~~  141 (141)
T 1kmt_A          114 IKSRFTDDDKTDHLSWEWNLTIKKDWKD  141 (141)
T ss_dssp             EEEEEECTTCCCSEEEEEEEEEESCC--
T ss_pred             eeEEEEcCCCcEEEEEEEeEEEecCCCC
Confidence            9999999999999999999999999986

>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A

Probab=100.00  E-value=2.4e-45  Score=284.59  Aligned_cols=96  Identities=46%  Similarity=0.794  Sum_probs=92.8

Q ss_pred             EEEEEEEEEEEcCC-CceeEEEEEeeecceeEeecccceeeeeCCCCCCeeecCCCCCCCccceeeeeeeeEEEEEeCCC
Q psy9193          32 GVYSVQSLFTDDDD-AEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDD  110 (128)
Q Consensus        32 g~Ysvk~~F~ddd~-v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~f~DdD~  110 (128)
                      +.|+++++|+|+++ ++||+|+|+ |||+||+||++++|||||+|++++|+++||+|||||||||||+|+|+|+|+|||+
T Consensus        84 s~Y~iki~F~V~~eivsGLkY~q~-v~r~Gi~Vdk~~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~skF~DDD~  162 (180)
T 1ds6_B           84 SEYRVKIHFKVNRDIVSGLKYVQH-TYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDK  162 (180)
T ss_dssp             CEEEEEEEECCCSSCEEEEEEEEE-EEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTC
T ss_pred             cEEEEEEEEEEecccccCcEEEEE-EEECCEEECCceEeeeccCCCCCceeecCCCccCCcceeeeeeeeeeEEEEcCCC
Confidence            79999999999965 799999999 6999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEeceeeecCCCC
Q psy9193         111 AEHLKWEWTFEIKKSWKD  128 (128)
Q Consensus       111 ~~~l~~ew~feI~K~W~~  128 (128)
                      ++||+|+|+|+|+|+|+|
T Consensus       163 ~~hl~~~wsfeI~KdW~~  180 (180)
T 1ds6_B          163 QDHLSWEWNLSIKKEWGE  180 (180)
T ss_dssp             CCCEEEEEEEEEESSCC-
T ss_pred             ceEEEEEEEEEEeeCCCC
Confidence            999999999999999986

>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*

Probab=100.00  E-value=1.1e-44  Score=287.76  Aligned_cols=102  Identities=40%  Similarity=0.702  Sum_probs=96.6

Q ss_pred             ccceE----EEEEEEEEEEEEcCC-CceeEEEEEeeecceeEeecccceeeeeCCCCCCeeecCCCCCCCccceeeeeee
Q psy9193          26 SGMLA----RGVYSVQSLFTDDDD-AEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYS  100 (128)
Q Consensus        26 sG~l~----rg~Ysvk~~F~ddd~-v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~  100 (128)
                      +...+    .+.|+++++|+|+++ ++||+|+|+ |||+||+||++++|||||+|++++|+++||+|||||||||||+|+
T Consensus       113 k~~~F~IKEGs~Y~lki~FkV~~eIVsGLkY~q~-VkR~GI~Vdk~~~MlGSY~P~~e~y~~~~p~EeAPSGmLARG~Y~  191 (219)
T 1doa_B          113 KKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQH-TYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYN  191 (219)
T ss_dssp             GGCCEEEETTCEEEEEEEECBCSSCEEEEEEEEE-EEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCTTSCCSEEE
T ss_pred             cCCCEEecCCCEEEEEEEEEEecceecCcEEEEE-EEECCeEECCcceeeeccCCCCCcccccCCCccCCccceeeeeee
Confidence            55555    389999999999966 799999999 699999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeCCCCcEEEEEeceeeecCCCC
Q psy9193         101 VQSLFTDDDDAEHLKWEWTFEIKKSWKD  128 (128)
Q Consensus       101 a~s~f~DdD~~~~l~~ew~feI~K~W~~  128 (128)
                      |+|+|+|||+++||+|+|+|+|+|+|+|
T Consensus       192 akSkF~DDD~~~hL~~eWsfeI~KdW~~  219 (219)
T 1doa_B          192 IKSRFTDDDRTDHLSWEWNLTIKKEWKD  219 (219)
T ss_dssp             EEEEEECTTCCCCEEEEEEEEEESSTTC
T ss_pred             eeEEEEeCCCceEEEEEEEEEEecCCCC
Confidence            9999999999999999999999999986

>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A

Probab=99.82  E-value=3.8e-21  Score=143.93  Aligned_cols=54  Identities=52%  Similarity=0.851  Sum_probs=52.2

Q ss_pred             cceeeecCCCCCCCcccCCCCCCCccceEEEEEEEEEEEEEcCCCceeEEEEEe
Q psy9193           2 VHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLI   55 (128)
Q Consensus         2 ~~m~Gsy~P~~~~~~~~~p~eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~   55 (128)
                      ++|||||+|++|+|++++|+|||||||||||+|+++++|+|||+.+||.|.|.+
T Consensus        80 ~~mlGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~F~DDD~~~hl~~~w~f  133 (141)
T 1kmt_A           80 DYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNL  133 (141)
T ss_dssp             EEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCSEEEEEEE
T ss_pred             eEeeeccCCCCCcceecCCCccCCceeEEeeeeeeeEEEEcCCCcEEEEEEEeE
Confidence            589999999999999999999999999999999999999999999999999985

>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A

Probab=99.79  E-value=2.7e-20  Score=144.11  Aligned_cols=54  Identities=52%  Similarity=0.867  Sum_probs=52.2

Q ss_pred             cceeeecCCCCCCCcccCCCCCCCccceEEEEEEEEEEEEEcCCCceeEEEEEe
Q psy9193           2 VHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLI   55 (128)
Q Consensus         2 ~~m~Gsy~P~~~~~~~~~p~eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~   55 (128)
                      ++|||||+|++++|++++|+|||||||||||+|+++++|+|||+.+||.|.|.+
T Consensus       119 ~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~skF~DDD~~~hl~~~wsf  172 (180)
T 1ds6_B          119 TFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNL  172 (180)
T ss_dssp             EEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCCEEEEEEE
T ss_pred             eEeeeccCCCCCceeecCCCccCCcceeeeeeeeeeEEEEcCCCceEEEEEEEE
Confidence            589999999999999999999999999999999999999999999999999985

>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*

Probab=99.78  E-value=7.4e-20  Score=145.30  Aligned_cols=54  Identities=52%  Similarity=0.847  Sum_probs=52.3

Q ss_pred             cceeeecCCCCCCCcccCCCCCCCccceEEEEEEEEEEEEEcCCCceeEEEEEe
Q psy9193           2 VHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLI   55 (128)
Q Consensus         2 ~~m~Gsy~P~~~~~~~~~p~eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~   55 (128)
                      ++|||||+|++++|++++|+|||||||||||+|+++++|+|||+.+||.|.|.+
T Consensus       158 ~~MlGSY~P~~e~y~~~~p~EeAPSGmLARG~Y~akSkF~DDD~~~hL~~eWsf  211 (219)
T 1doa_B          158 DYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNL  211 (219)
T ss_dssp             EEEEEEECCCSSCEEEECCCEECCCTTSCCSEEEEEEEEECTTCCCCEEEEEEE
T ss_pred             ceeeeccCCCCCcccccCCCccCCccceeeeeeeeeEEEEeCCCceEEEEEEEE
Confidence            589999999999999999999999999999999999999999999999999985

>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B*

Probab=90.58  E-value=1  Score=33.73  Aligned_cols=89  Identities=16%  Similarity=0.173  Sum_probs=66.1

Q ss_pred             CCccceEEEEEEEEEEEEEcCCCceeEEEEEeeecceeEeecccceeeeeCCCCC---CeeecCCCCC-CCccceeeeee
Q psy9193          24 APSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLE---LQSYTTPPED-APSGMLARGVY   99 (128)
Q Consensus        24 aPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e---~y~~~~~~ee-aPsG~laRG~Y   99 (128)
                      .|..+|-.-+=..++.|.+++.+.+++.+|. ++=+|-.+..-..-.|==.|+..   .+.+.+|++. .=+--+.-|.-
T Consensus        51 fp~~~L~~~~V~~~i~Fs~~epi~nFRmier-hyf~~~lle~~dF~FGF~IP~StNTWe~i~E~~~~~~mlpa~~lsGnv  129 (152)
T 3t5g_B           51 VPKKILKCKAVSRELNFSSTEQMEKFRLEQK-VYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNV  129 (152)
T ss_dssp             ECGGGGGCSEEEEEEEEEESSCEEEEEEEEE-EEETTEEEEEEEEEEEEECTTEEEEEEEEEEBCCGGGSCCHHHHTTTE
T ss_pred             cCHHHhcchhheEEEEEeccccccccEEEEE-EEEcCceeeeEeeeeeeEcCCCCcccceEEEcCCccccCCHhHcCCcE
Confidence            4666666667778999999888999999999 59888888888888888789964   3444454331 22223345999


Q ss_pred             eeEEEEEeCCCCcE
Q psy9193         100 SVQSLFTDDDDAEH  113 (128)
Q Consensus       100 ~a~s~f~DdD~~~~  113 (128)
                      .+..+|+|+|.-..
T Consensus       130 ~IeT~f~d~d~li~  143 (152)
T 3t5g_B          130 IIETKFFDDDLLVS  143 (152)
T ss_dssp             EEEEEEEETTEEEE
T ss_pred             EEEEEEecCCEEEE
Confidence            99999999998433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	128
d1kmta_	138	b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, Rh	5e-33
d1kmta_	138	b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, Rh	7e-22
d1ds6b_	179	b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, Rh	1e-32
d1ds6b_	179	b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, Rh	1e-21

>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (277), Expect = 5e-33
 Identities = 36/64 (56%), Positives = 43/64 (67%)

Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P      + TP E+AP GMLARG YS++S FTDDD  +HL WEW   I
Sbjct: 75  IDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 134

Query: 123 KKSW 126
           KK W
Sbjct: 135 KKDW 138

>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (203), Expect = 7e-22
 Identities = 28/51 (54%), Positives = 34/51 (66%)

Query: 1   MVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
             +MVGSY P      + TP E+AP GMLARG YS++S FTDDD  +HL W
Sbjct: 78  TDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128

>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Length = 179

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (278), Expect = 1e-32
 Identities = 37/64 (57%), Positives = 41/64 (64%)

Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           VDK   MVGSY P  E   + TP E+AP GMLARG Y  +S FTDDD  +HL WEW   I
Sbjct: 115 VDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSI 174

Query: 123 KKSW 126
           KK W
Sbjct: 175 KKEW 178

>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Length = 179

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (204), Expect = 1e-21
 Identities = 28/51 (54%), Positives = 32/51 (62%)

Query: 1   MVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
              MVGSY P  E   + TP E+AP GMLARG Y  +S FTDDD  +HL W
Sbjct: 118 ATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSW 168

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d1kmta_	138	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	100.0
d1ds6b_	179	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	100.0
d1kmta_	138	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	99.8
d1ds6b_	179	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	99.78
d1kshb_	149	GMP-PDE delta {Human (Homo sapiens) [TaxId: 9606]}	93.17

>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-45  Score=274.78  Aligned_cols=94  Identities=41%  Similarity=0.764  Sum_probs=92.1

Q ss_pred             EEEEEEEEEEEcCC-CceeEEEEEeeecceeEeecccceeeeeCCCCCCeeecCCCCCCCccceeeeeeeeEEEEEeCCC
Q psy9193          32 GVYSVQSLFTDDDD-AEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDD  110 (128)
Q Consensus        32 g~Ysvk~~F~ddd~-v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~f~DdD~  110 (128)
                      .+|+++++|+|+++ ++||+|.|+ |||+||+||++++|||||+|+.|+|+++||+|||||||||||+|+|+|+|+|||+
T Consensus        44 s~Y~i~i~F~V~~eivsGLky~q~-v~r~Gi~Vdk~~~mvGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~s~f~Ddd~  122 (138)
T d1kmta_          44 VEYRIKISFRVNREIVSGMKYIQH-TYRKGVKIDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDK  122 (138)
T ss_dssp             CEEEEEEEEEECSSCEEEEEEEEE-EEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTC
T ss_pred             CEEEEEEEEEEccccccCcEEEEE-EEECCEEEcceeEeeeccCCCCCcEEEeCCCccCCceEEEeeeeeEEEEEEcCCC
Confidence            79999999999966 899999999 6999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEeceeeecCC
Q psy9193         111 AEHLKWEWTFEIKKSW  126 (128)
Q Consensus       111 ~~~l~~ew~feI~K~W  126 (128)
                      ++||+|+|+|+|+|||
T Consensus       123 ~~~l~~~w~feI~KdW  138 (138)
T d1kmta_         123 TDHLSWEWNLTIKKDW  138 (138)
T ss_dssp             CCSEEEEEEEEEESCC
T ss_pred             cEEEEEEEEEEEecCC
Confidence            9999999999999999

>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-44  Score=278.16  Aligned_cols=95  Identities=46%  Similarity=0.792  Sum_probs=92.6

Q ss_pred             EEEEEEEEEEEcCC-CceeEEEEEeeecceeEeecccceeeeeCCCCCCeeecCCCCCCCccceeeeeeeeEEEEEeCCC
Q psy9193          32 GVYSVQSLFTDDDD-AEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDD  110 (128)
Q Consensus        32 g~Ysvk~~F~ddd~-v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~f~DdD~  110 (128)
                      ++|+++++|+|+++ ++||+|.|+ |||+||+||++++|||||+|++|+|+++||+|||||||||||+|+|+|+|+|||+
T Consensus        84 s~Y~i~i~F~V~~eivsGLkY~q~-vkr~Gi~Vdk~~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~s~F~DDD~  162 (179)
T d1ds6b_          84 SEYRVKIHFKVNRDIVSGLKYVQH-TYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDK  162 (179)
T ss_dssp             CEEEEEEEECCCSSCEEEEEEEEE-EEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTC
T ss_pred             CEEEEEEEEEEecccccCcEEEEE-EEECCEEEcceeEeeeccCCCCCceeEeCCCccCCceeEEeecceEEEEEEcCCC
Confidence            79999999999977 799999999 6999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEeceeeecCCC
Q psy9193         111 AEHLKWEWTFEIKKSWK  127 (128)
Q Consensus       111 ~~~l~~ew~feI~K~W~  127 (128)
                      ++||+|+|+|+|+|+|-
T Consensus       163 ~~~l~~~w~feI~KdW~  179 (179)
T d1ds6b_         163 QDHLSWEWNLSIKKEWG  179 (179)
T ss_dssp             CCCEEEEEEEEEESSCC
T ss_pred             cEEEEEEEEEEEecCcC
Confidence            99999999999999994

>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.5e-21  Score=140.24  Aligned_cols=54  Identities=52%  Similarity=0.851  Sum_probs=52.2

Q ss_pred             cceeeecCCCCCCCcccCCCCCCCccceEEEEEEEEEEEEEcCCCceeEEEEEe
Q psy9193           2 VHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLI   55 (128)
Q Consensus         2 ~~m~Gsy~P~~~~~~~~~p~eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~   55 (128)
                      .+|||||+|++|+|++++|+||||+||||||+|+++++|+|||+.+||.|.|.+
T Consensus        79 ~~mvGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~s~f~Ddd~~~~l~~~w~f  132 (138)
T d1kmta_          79 DYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNL  132 (138)
T ss_dssp             EEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCSEEEEEEE
T ss_pred             eEeeeccCCCCCcEEEeCCCccCCceEEEeeeeeEEEEEEcCCCcEEEEEEEEE
Confidence            589999999999999999999999999999999999999999999999999975

>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.3e-20  Score=141.72  Aligned_cols=54  Identities=52%  Similarity=0.867  Sum_probs=52.1

Q ss_pred             cceeeecCCCCCCCcccCCCCCCCccceEEEEEEEEEEEEEcCCCceeEEEEEe
Q psy9193           2 VHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLI   55 (128)
Q Consensus         2 ~~m~Gsy~P~~~~~~~~~p~eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~   55 (128)
                      .+|||||+|++|+|++++|+||||+||||||+|+++++|+|||+.+||.|.|.+
T Consensus       119 ~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~s~F~DDD~~~~l~~~w~f  172 (179)
T d1ds6b_         119 TFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNL  172 (179)
T ss_dssp             EEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCCEEEEEEE
T ss_pred             eEeeeccCCCCCceeEeCCCccCCceeEEeecceEEEEEEcCCCcEEEEEEEEE
Confidence            589999999999999999999999999999999999999999999999999875

>d1kshb_ b.1.18.8 (B:) GMP-PDE delta {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: GMP-PDE delta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.076  Score=38.00  Aligned_cols=84  Identities=17%  Similarity=0.217  Sum_probs=63.9

Q ss_pred             CccceEEEEEEEEEEEEEcCCCceeEEEEEeeecceeEeecccceeeeeCCCCC---CeeecCC--CCCCCccceeeeee
Q psy9193          25 PSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLE---LQSYTTP--PEDAPSGMLARGVY   99 (128)
Q Consensus        25 PsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e---~y~~~~~--~eeaPsG~laRG~Y   99 (128)
                      |.-+|-.-.=+..+.|.+++.+.+++.+|. ++=+|-.+..=+.-.|==-|+..   .+.+.+|  .+..|.-||+ |.-
T Consensus        49 p~~~L~~k~V~~~i~Fs~~e~i~~Frmier-hyfr~~lle~~dFeFGF~IP~S~NTwe~iye~p~~~~~~~~~~l~-g~~  126 (149)
T d1kshb_          49 PKKILKCKAVSRELNFSSTEQMEKFRLEQK-VYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLT-GNV  126 (149)
T ss_dssp             CGGGGGCSCEEEEEEEEESSCEEEEEEEEE-EEETTEEEEEEEEEEEEECTTEEEEEEEEEC-------CCSTTTT-TSE
T ss_pred             CHHHhccceeceEEEEecCcccccceEEEE-EeecCceeeEEEeeeeeEecCCCcchhheeecCCccccchHHHhc-CCe
Confidence            445555555678899999988999999999 59899999999999997779963   3455555  4578888888 677


Q ss_pred             eeEEEEEeCCC
Q psy9193         100 SVQSLFTDDDD  110 (128)
Q Consensus       100 ~a~s~f~DdD~  110 (128)
                      ...|.|.|||+
T Consensus       127 ~~dt~yf~~d~  137 (149)
T d1kshb_         127 IIETKFFDDDL  137 (149)
T ss_dssp             EEEEEEEETTE
T ss_pred             EEEEEEEECCE
Confidence            88899999987