Psyllid ID: psy9196

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
Protein Sequence
DCTVNLARQFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWLMERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEAKVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYATTNLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTSDTDGDKSSR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHccccEEEEccHHHHHHHHHccccccccccccccEEEEEccccHHHHHHHHHHHcccEEEEEEEEccEEccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEcccHHHHHHHcccccHccHHHcccccEEEEcccHHHHHHHHHHHccccEEEEEEEEcccEccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccc
Coil and Loop (DISEMBL)
dctvnlarQFSRTCVLErrintrrprppcyekalfieiskpkfppnpeyllpsheKCQKARARQWLMERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEAKVDVLLKTlkktpqltLMATIVDNRLLSKTETEMYATTNLATQQALLVQTISSVATSLTSQLNHHSTTLVSYldqhsgtggeggssasealsgsetsggsegeatsneasgesqesakaasssdnqgeatssneasgesqesdsakaasssqsptesapggevskaasatdsqsseaapgdkvtdgketpstsdtdgdkssr
Flexible Loop (DISEMBL)
dctvnlarqfsrtcvlerrintrrprppcyEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWLMERKGLNEENIFQNILAKEILARFEESQMIAIVHrssmlaevnREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEAKVDVLLKtlkktpqltlmativDNRLLSKTETEMYATTNLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAkaasssdnqgeatssneasgesqesDSAKAAsssqsptesapggEVSKAasatdsqsseaapgdkvtdgketpstsdtdgdkssr
Low Complexity Region (SEG)
DCTVNLARQFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWLMERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEAKVDVllktlkktpqltlMATIVDNRLLSKTETEMYATTNLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHsgtggeggssasealsgsetsggsegeatsneasgesqesakaasssDNQGEATSSNEASGesqesdsakaasssqsPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTSDTDGDKSSR
Disordered region (IsUnstruct)
*****LARQFSRTCVLERRINTRRPRPPCYEKALFIEISK********YLL*****CQKARARQWLMERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEAKVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYATTNLATQQALLVQTISSVATSLTSQLNHHSTTLVSY**********************************************************************************************************************************
Disordered Region (DISOPRED)
***VNLARQFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPS*************************QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEAKVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYATTNLATQQALLVQTISSVATSLTSQ*********************************************************************************************************************************************
Disordered Region (DISEMBL)
DCTVNLARQFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWLMERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEAKVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYATTNLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQ*******************************************************************************************************************************
Disordered Region (DISPRO)
DCTVNLARQFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWLMERKG*NEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEAKVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYATTNLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTG**************************************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DCTVNLARQFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWLMERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEAKVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYATTNLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTSDTDGDKSSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	362	2.2.26 [Sep-21-2011]
Q29NV5	253	39S ribosomal protein L10	yes	N/A	0.629	0.901	0.349	3e-31
Q9VPL3	248	39S ribosomal protein L10	yes	N/A	0.599	0.875	0.343	1e-28
Q3MHY7	262	39S ribosomal protein L10	yes	N/A	0.466	0.645	0.286	6e-11
Q3TBW2	262	39S ribosomal protein L10	yes	N/A	0.488	0.675	0.281	2e-10
P0C2C4	263	39S ribosomal protein L10	yes	N/A	0.480	0.661	0.261	7e-09
Q7Z7H8	261	39S ribosomal protein L10	yes	N/A	0.450	0.624	0.260	6e-08
Q5BJB7	252	39S ribosomal protein L10	yes	N/A	0.483	0.694	0.245	3e-05

>sp|Q29NV5|RM10_DROPS 39S ribosomal protein L10, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=mRpL10 PE=3 SV=1

 Score =  136 bits (342), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/246 (34%), Positives = 132/246 (53%), Gaps = 18/246 (7%)

Query: 11  SRTCVLER-----RINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQW 65
           +RT VL+      +IN +RP+ P YE+A  + +++PK+P      LP    C + RA   
Sbjct: 14  TRTPVLQFLRFRGKINIQRPKEPHYERARVVAVTQPKYPE-----LPKARSCFQTRA--- 65

Query: 66  LMERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLD 125
             ER     EN +  I+A+E+      SQ++AI H +S+ A+    V+V   +  +  L 
Sbjct: 66  --ERTKEQLENPYNEIIAREVRNWLNHSQLVAIFHLNSITADEIFRVRVQLHKQNLH-LK 122

Query: 126 RYGRATIEKALTNTKYISIMPLFKVSEAIIVSP-EAKVDVLLKTLKKTPQLTLMATIVDN 184
            YGR  I++A+T T Y +IMPLF  +  I+ SP + ++  LLK  ++ PQ+ L+  IV+ 
Sbjct: 123 SYGRKIIDQAVTGTPYEAIMPLFHSNHCIVFSPNQQQIGALLKITRRVPQMVLLGGIVEK 182

Query: 185 RLLSKTETEMYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEG 243
            LLS+ E   YA   NL   QA LVQT++  A  L   L  H   LV  LD H+   G+ 
Sbjct: 183 TLLSRNELMAYAQMPNLQGAQAQLVQTLNLAAGQLVQHLQTHQANLVQVLDVHAKGNGDT 242

Query: 244 GSSASE 249
            ++ +E
Sbjct: 243 NTNTTE 248

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9VPL3|RM10_DROME 39S ribosomal protein L10, mitochondrial OS=Drosophila melanogaster GN=mRpL10 PE=2 SV=1

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 125/233 (53%), Gaps = 16/233 (6%)

Query: 7   ARQFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWL 66
           A QF R      +IN +RP+ P YE+A  + +++PK+P      LP  + C K RA    
Sbjct: 18  ALQFLR---FRGKINIQRPKAPHYERARVVAVTQPKYPE-----LPKAKSCFKTRA---- 65

Query: 67  MERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDR 126
            ER    +EN +  I+A+E+    + S+++A  H SS+ A+    V+V   +  +  L  
Sbjct: 66  -ERTQQQQENPYNEIIAREVRNWLDHSRLVAFFHLSSITADDIFRVRVQLHKQNLH-LKS 123

Query: 127 YGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA-KVDVLLKTLKKTPQLTLMATIVDNR 185
           YG   IE+A+ NT+Y +I+PLF  +  I+ SP+  K   LL+ +++ PQ+ L+  IV+  
Sbjct: 124 YGSKIIEQAVKNTRYEAIVPLFHSNHCIVFSPDPEKTAALLRIVRRVPQMVLLGGIVEET 183

Query: 186 LLSKTETEMYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHS 237
           +LS+ +   YA    L   QA LVQT+S     L  QL  H  + V  LD H+
Sbjct: 184 MLSRNQLVAYAQMPGLHAVQAQLVQTLSQAPGHLIQQLQAHQNSFVQVLDVHA 236

Drosophila melanogaster (taxid: 7227)

>sp|Q3MHY7|RM10_BOVIN 39S ribosomal protein L10, mitochondrial OS=Bos taurus GN=MRPL10 PE=1 SV=2

 Score = 68.9 bits (167), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 2/171 (1%)

Query: 74  EENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIE 133
           EE     +L +EI A F +++MIA+    +M AE    ++   ++  + M   +    ++
Sbjct: 74  EETGLIRLLRREIAAVFRDNRMIAVCQNVAMSAEDKLLMRHQLRKHKILM-KVFPNQILK 132

Query: 134 KALTNTKYISIMPLFKVSEAIIVSPEAKVDVLLKTLKKTPQLTLMATIVDNRLLSKTETE 193
             L ++KY +++PLF     ++VS E KV  +++ LK  P L L+   +D+ +LS+    
Sbjct: 133 PFLEDSKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKSVPFLPLLGGCIDDTILSRQGFI 192

Query: 194 MYA-TTNLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEG 243
            Y+   +LA  Q  LV  ++ +     S L HH   L + LDQ++    EG
Sbjct: 193 NYSKLPSLALAQGELVGGLTLLTARTHSLLQHHPLQLTALLDQYARQQHEG 243

Bos taurus (taxid: 9913)

>sp|Q3TBW2|RM10_MOUSE 39S ribosomal protein L10, mitochondrial OS=Mus musculus GN=Mrpl10 PE=2 SV=2

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 4/181 (2%)

Query: 74  EENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIE 133
           EE+    +L ++I+A F +++MIA+    ++ AE    ++   ++     +  +    ++
Sbjct: 74  EESGLVRLLRQDIVAVFRDNRMIAVCQNVALSAEDKLLLRHQLRK-HKIFIKVFPSQVLK 132

Query: 134 KALTNTKYISIMPLFKVSEAIIVSPEAKVDVLLKTLKKTPQLTLMATIVDNRLLSKTETE 193
             L N+KY +++PLF     ++VS E KV  +++ LK  P L L+   VD+ +LS+    
Sbjct: 133 PFLENSKYRNLLPLFVGHNLLLVSEEPKVKEMVRVLKSVPFLPLLGGCVDDTILSRQGLV 192

Query: 194 MYA-TTNLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEG--GSSASEA 250
            YA   +L   Q  LV  ++ +       L H    L S LDQ+     EG   +SA+E 
Sbjct: 193 DYAKLPSLDQLQGQLVGGLTHLMAQTRYLLQHQPVQLTSLLDQYVKEQNEGDCATSANEK 252

Query: 251 L 251
           L
Sbjct: 253 L 253

Mus musculus (taxid: 10090)

>sp|P0C2C4|RM10_RAT 39S ribosomal protein L10, mitochondrial OS=Rattus norvegicus GN=Mrpl10 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 2/176 (1%)

Query: 74  EENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIE 133
           EE+    +L ++I A F +++MIA+    ++ AE    ++   ++     +  +    ++
Sbjct: 75  EESGLIRLLRRDIAAVFRDNRMIAVCQNVALSAEDKLLLRHQLRK-HKIFIKVFPSQVLK 133

Query: 134 KALTNTKYISIMPLFKVSEAIIVSPEAKVDVLLKTLKKTPQLTLMATIVDNRLLSKTETE 193
             L ++KY +++PLF     ++VS E KV  +++ LK  P L L+   +D+ +LS+    
Sbjct: 134 PFLEDSKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKSVPFLPLLGGCIDDTILSRQGFV 193

Query: 194 MYA-TTNLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEGGSSAS 248
            YA   +L   Q  LV  ++ +       L H    L S LDQ+     EG  + S
Sbjct: 194 EYAKLPSLDRLQGELVGGLTHLTAQTRYLLQHQPVQLTSLLDQYVRQQHEGDCATS 249

Rattus norvegicus (taxid: 10116)

>sp|Q7Z7H8|RM10_HUMAN 39S ribosomal protein L10, mitochondrial OS=Homo sapiens GN=MRPL10 PE=1 SV=3

 Score = 58.9 bits (141), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 2/165 (1%)

Query: 73  NEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATI 132
            EE     +L +EI A F++++MIA+    ++ AE    ++   ++  + M   +    +
Sbjct: 73  QEEIGLIRLLRREIAAVFQDNRMIAVCQNVALSAEDKLLMRHQLRKHKILM-KVFPNQVL 131

Query: 133 EKALTNTKYISIMPLFKVSEAIIVSPEAKVDVLLKTLKKTPQLTLMATIVDNRLLSKTET 192
           +  L ++KY +++PLF     ++VS E KV  +++ L+  P L L+   +D+ +LS+   
Sbjct: 132 KPFLEDSKYQNLLPLFVGHNMLLVSEEPKVKEMVRILRTVPFLPLLGGCIDDTILSRQGF 191

Query: 193 EMYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQH 236
             Y+   +L   Q  LV  ++ +     S L H    L + LDQ+
Sbjct: 192 INYSKLPSLPLVQGELVGGLTCLTAQTHSLLQHQPLQLTTLLDQY 236

Homo sapiens (taxid: 9606)

>sp|Q5BJB7|RM10_DANRE 39S ribosomal protein L10, mitochondrial OS=Danio rerio GN=mrpl10 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 8/183 (4%)

Query: 74  EENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIE 133
           EE+    +L K++   F+E +MIA+   +++ AE    +K   K+  + +  ++    + 
Sbjct: 70  EESSLAVMLRKDLENLFQEYKMIAVAQNNAISAEDMIHLKHRLKKHAINV--KFFPNQVT 127

Query: 134 KALTNTK-YISIMPLFKVSEAIIVSPEAKVDVLLKTLKKTPQLTLMATIVDNRLLSKTET 192
           ++  N+  Y ++ PL      ++ S E KV  +L+ L+  PQ+ L+   ++N L S    
Sbjct: 128 RSFLNSSIYGNMSPLIFGETVLLASKEPKVKEMLQALRHNPQIVLLGACIENTLFSYQGI 187

Query: 193 EMYATT-NLATQQALLVQTISSVATSLTSQLNHH----STTLVSYLDQHSGTGGEGGSSA 247
             Y+   ++A  +  LV  ++ + +   S L+HH    S  L  Y+ Q S    +  +S 
Sbjct: 188 LSYSKLPSIAIIRGELVSGLTMMTSKTVSMLHHHPAHLSALLQQYVKQQSSADTDKDASI 247

Query: 248 SEA 250
            EA
Sbjct: 248 QEA 250


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.306    0.120    0.317 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,242,484
Number of Sequences: 539616
Number of extensions: 4471267
Number of successful extensions: 55461
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 1513
Number of HSP's that attempted gapping in prelim test: 29886
Number of HSP's gapped (non-prelim): 14723
length of query: 362
length of database: 191,569,459
effective HSP length: 119
effective length of query: 243
effective length of database: 127,355,155
effective search space: 30947302665
effective search space used: 30947302665
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
195035279	253	GH11540 [Drosophila grimshawi] gi|193905	0.618	0.885	0.352	1e-29
125987413	253	GA11028 [Drosophila pseudoobscura pseudo	0.629	0.901	0.349	2e-29
195386412	250	GJ24613 [Drosophila virilis] gi|19414835	0.593	0.86	0.359	3e-29
194766415	253	GF20722 [Drosophila ananassae] gi|190617	0.629	0.901	0.349	2e-28
195114440	256	GI17030 [Drosophila mojavensis] gi|19391	0.593	0.839	0.337	7e-28
158299006	250	AGAP009988-PA [Anopheles gambiae str. PE	0.580	0.84	0.375	2e-27
17647667	248	mitochondrial ribosomal protein L10 [Dro	0.599	0.875	0.343	8e-27
195350027	248	GM16723 [Drosophila sechellia] gi|194123	0.599	0.875	0.347	2e-26
195575473	248	GD23008 [Drosophila simulans] gi|1941896	0.599	0.875	0.343	4e-26
194853286	248	GG24703 [Drosophila erecta] gi|190660002	0.599	0.875	0.334	4e-26

>gi|195035279|ref|XP_001989105.1| GH11540 [Drosophila grimshawi] gi|193905105|gb|EDW03972.1| GH11540 [Drosophila grimshawi]

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 135/241 (56%), Gaps = 17/241 (7%)

Query: 19  RINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWLMERKGLNEENIF 78
           +IN +RP+ P YE+A  + +++PK+P  P+ L      C ++RA     +R     EN +
Sbjct: 27  KINIQRPKEPHYERARVVAVTQPKYPEPPKAL-----TCFQSRA-----QRTAAQLENPY 76

Query: 79  QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTN 138
             I+A+E+    + S+++AI H +S+ A+    V+V   +  M  L  YGR  I +A+T 
Sbjct: 77  NAIIAREVRNWLDHSRLVAIFHLNSITADEIFRVRVQLHKQNMH-LKSYGRKIIAQAVTG 135

Query: 139 TKYISIMPLFKVSEAIIVSP-EAKVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYAT 197
           T+Y +IMPLF  +  I+ SP + +V  LL+  +K PQ+ L+  IV+N LLS+ E   +A 
Sbjct: 136 TQYEAIMPLFHSNHCIVFSPDQQRVGALLRLTRKVPQMVLLGGIVENTLLSRNELINFAQ 195

Query: 198 T-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEGGSSASEALSGSET 256
              L + QA LVQT++  A ++  QL  H   LV  LD H+    +GGS A+      ET
Sbjct: 196 LPGLQSAQAQLVQTLNMAAGTVVQQLQAHQCNLVKVLDVHA----KGGSDAAPTTDVKET 251

Query: 257 S 257
           +
Sbjct: 252 N 252

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125987413|ref|XP_001357469.1| GA11028 [Drosophila pseudoobscura pseudoobscura] gi|121995499|sp|Q29NV5.1|RM10_DROPS RecName: Full=39S ribosomal protein L10, mitochondrial; Short=L10mt; Short=MRP-L10; Flags: Precursor gi|54645801|gb|EAL34539.1| GA11028 [Drosophila pseudoobscura pseudoobscura]

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/246 (34%), Positives = 132/246 (53%), Gaps = 18/246 (7%)

Query: 11  SRTCVLER-----RINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQW 65
           +RT VL+      +IN +RP+ P YE+A  + +++PK+P      LP    C + RA   
Sbjct: 14  TRTPVLQFLRFRGKINIQRPKEPHYERARVVAVTQPKYPE-----LPKARSCFQTRA--- 65

Query: 66  LMERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLD 125
             ER     EN +  I+A+E+      SQ++AI H +S+ A+    V+V   +  +  L 
Sbjct: 66  --ERTKEQLENPYNEIIAREVRNWLNHSQLVAIFHLNSITADEIFRVRVQLHKQNLH-LK 122

Query: 126 RYGRATIEKALTNTKYISIMPLFKVSEAIIVSP-EAKVDVLLKTLKKTPQLTLMATIVDN 184
            YGR  I++A+T T Y +IMPLF  +  I+ SP + ++  LLK  ++ PQ+ L+  IV+ 
Sbjct: 123 SYGRKIIDQAVTGTPYEAIMPLFHSNHCIVFSPNQQQIGALLKITRRVPQMVLLGGIVEK 182

Query: 185 RLLSKTETEMYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEG 243
            LLS+ E   YA   NL   QA LVQT++  A  L   L  H   LV  LD H+   G+ 
Sbjct: 183 TLLSRNELMAYAQMPNLQGAQAQLVQTLNLAAGQLVQHLQTHQANLVQVLDVHAKGNGDT 242

Query: 244 GSSASE 249
            ++ +E
Sbjct: 243 NTNTTE 248

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195386412|ref|XP_002051898.1| GJ24613 [Drosophila virilis] gi|194148355|gb|EDW64053.1| GJ24613 [Drosophila virilis]

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 129/231 (55%), Gaps = 16/231 (6%)

Query: 9   QFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWLME 68
           QF R      +IN +RP+ P YE+A  + +++PK+P  P+ L      C ++RA     E
Sbjct: 20  QFVR---FRGKINIQRPKEPHYERARVVAVTQPKYPEPPKAL-----TCFQSRA-----E 66

Query: 69  RKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYG 128
           R G   EN +  I+A+E+    + S+++AI H +S++A+    V+V   +  M  L  YG
Sbjct: 67  RLGTQVENPYNAIIAREVRNWLDHSKLVAIFHLNSIMADELFRVRVQLHKQNMH-LKSYG 125

Query: 129 RATIEKALTNTKYISIMPLFKVSEAIIVSP-EAKVDVLLKTLKKTPQLTLMATIVDNRLL 187
           R  I +A+  T+Y +IMPLF  +  I+ SP + +V  LL+  +K PQ+ L+  IV+N LL
Sbjct: 126 RKIIAQAVAGTQYEAIMPLFHSNHCIVFSPDQHRVAALLRLTRKVPQMVLLGGIVENTLL 185

Query: 188 SKTETEMYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHS 237
           S+ E   +A    L   QA LVQT++  A ++  QL  H   LV  LD H+
Sbjct: 186 SRNELMDFAQMPGLQVAQAQLVQTLNMAAGNVVQQLQAHQCNLVKVLDVHA 236

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194766415|ref|XP_001965320.1| GF20722 [Drosophila ananassae] gi|190617930|gb|EDV33454.1| GF20722 [Drosophila ananassae]

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/246 (34%), Positives = 134/246 (54%), Gaps = 18/246 (7%)

Query: 7   ARQFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWL 66
           A QF R      +IN +RP+ P YE+A  I +++PK+P  P+      + C ++R     
Sbjct: 18  ALQFLR---FRGKINIQRPKAPHYERARVIAVTQPKYPEAPK-----SKTCFQSRT---- 65

Query: 67  MERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDR 126
            ER     EN + +I+A+E+    E SQ++AI H +S+ ++   +V+V   +  +  L  
Sbjct: 66  -ERFQQQVENPYNDIIAREVRNWLEHSQLVAIFHLNSITSDEIFKVRVDLHKQNLH-LKS 123

Query: 127 YGRATIEKALTNTKYISIMPLFKVSEAIIVSP-EAKVDVLLKTLKKTPQLTLMATIVDNR 185
           YGR  I +A+ +T+Y +IMPLF  +  I+ SP + +V  LLK  ++ PQ+ L+  IV+  
Sbjct: 124 YGRKIIGEAVKDTRYEAIMPLFHSNHCIVFSPDQQRVSTLLKITRRVPQMVLLGGIVEKT 183

Query: 186 LLSKTETEMYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEGG 244
           LLS+ E   YA    L   QA LVQT++  A +L  QL  H  + V  LD H+   GE  
Sbjct: 184 LLSRNELMAYAQMPGLQAAQAQLVQTLNQAAGNLVQQLQAHQNSFVQVLDVHA--KGEAK 241

Query: 245 SSASEA 250
            S  E+
Sbjct: 242 DSTQES 247

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195114440|ref|XP_002001775.1| GI17030 [Drosophila mojavensis] gi|193912350|gb|EDW11217.1| GI17030 [Drosophila mojavensis]

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 130/231 (56%), Gaps = 16/231 (6%)

Query: 9   QFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWLME 68
           QF R      +IN +RP+ P YE+A  + +++PK+P  P+ L      C ++RA     +
Sbjct: 20  QFMR---FRGKINIQRPKQPHYERARVMAVTQPKYPEAPKAL-----TCFQSRA-----D 66

Query: 69  RKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYG 128
           R G   EN +  I+A+E+    + S+++AI H +S+ A+    V+V   +  +  L  YG
Sbjct: 67  RTGAQVENPYNAIIAREVRNWLDHSKLVAIFHLNSITADEIFRVRVQLYKQNLH-LKAYG 125

Query: 129 RATIEKALTNTKYISIMPLFKVSEAIIVSP-EAKVDVLLKTLKKTPQLTLMATIVDNRLL 187
           R  I +A+ +++Y +I+PLF  +  I+ SP + +V  LL+  +K PQ+ L+  IV+ +LL
Sbjct: 126 RKIIAQAVADSQYEAILPLFHSNHCIVFSPDQQRVGALLRITRKVPQMVLLGGIVEQKLL 185

Query: 188 SKTETEMYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHS 237
           S+ E   +A    L   QA LVQT++  AT++  QL  H   L+  LD H+
Sbjct: 186 SRNELVHFAQMPGLQAAQAQLVQTLNMAATNVVQQLQAHQCNLIKVLDVHA 236

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158299006|ref|XP_319125.4| AGAP009988-PA [Anopheles gambiae str. PEST] gi|157014161|gb|EAA13853.5| AGAP009988-PA [Anopheles gambiae str. PEST]

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 14/224 (6%)

Query: 19  RINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKA-RARQWLMERKGLNEENI 77
           +IN +RPRPP YE+A  +E+ KP +   PE+  P    C  A RA++  M+ K    +N 
Sbjct: 22  KINIQRPRPPHYERARVLEVIKPYYK-KPEFNAP----CIDAERAKE--MKSK---LDNP 71

Query: 78  FQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALT 137
           ++ I+A+E    FE S ++A VH +S+  E   + +V   R  ++ +  YG++ + KA+ 
Sbjct: 72  YETIIAREARNWFEHSNLVAFVHVNSIKQEDMFKAQVALHRHNVS-VKVYGKSIMRKAVA 130

Query: 138 NTKYISIMPLFKVSEAIIVSPEA-KVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYA 196
           +T++ +I+PLF+   AII SPE  K+  +L  LKKTPQL LM  IV+ RLLSK E   YA
Sbjct: 131 DTRFEAILPLFEAKTAIIFSPEVQKIKQVLSVLKKTPQLVLMGGIVEGRLLSKNEFMAYA 190

Query: 197 TT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGT 239
           T  ++ T +A     + SV   +   L  H + LV+ LD ++ T
Sbjct: 191 TMPDITTVRAQFAAVLDSVGGKIVGDLQCHQSQLVNLLDAYAKT 234

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17647667|ref|NP_523440.1| mitochondrial ribosomal protein L10 [Drosophila melanogaster] gi|74870265|sp|Q9VPL3.1|RM10_DROME RecName: Full=39S ribosomal protein L10, mitochondrial; Short=L10mt; Short=MRP-L10; Flags: Precursor gi|7296242|gb|AAF51533.1| mitochondrial ribosomal protein L10 [Drosophila melanogaster] gi|16768412|gb|AAL28425.1| GM04029p [Drosophila melanogaster] gi|21064427|gb|AAM29443.1| RE27758p [Drosophila melanogaster] gi|220942770|gb|ACL83928.1| mRpL10-PA [synthetic construct] gi|220952988|gb|ACL89037.1| mRpL10-PA [synthetic construct]

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 125/233 (53%), Gaps = 16/233 (6%)

Query: 7   ARQFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWL 66
           A QF R      +IN +RP+ P YE+A  + +++PK+P      LP  + C K RA    
Sbjct: 18  ALQFLR---FRGKINIQRPKAPHYERARVVAVTQPKYPE-----LPKAKSCFKTRA---- 65

Query: 67  MERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDR 126
            ER    +EN +  I+A+E+    + S+++A  H SS+ A+    V+V   +  +  L  
Sbjct: 66  -ERTQQQQENPYNEIIAREVRNWLDHSRLVAFFHLSSITADDIFRVRVQLHKQNLH-LKS 123

Query: 127 YGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA-KVDVLLKTLKKTPQLTLMATIVDNR 185
           YG   IE+A+ NT+Y +I+PLF  +  I+ SP+  K   LL+ +++ PQ+ L+  IV+  
Sbjct: 124 YGSKIIEQAVKNTRYEAIVPLFHSNHCIVFSPDPEKTAALLRIVRRVPQMVLLGGIVEET 183

Query: 186 LLSKTETEMYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHS 237
           +LS+ +   YA    L   QA LVQT+S     L  QL  H  + V  LD H+
Sbjct: 184 MLSRNQLVAYAQMPGLHAVQAQLVQTLSQAPGHLIQQLQAHQNSFVQVLDVHA 236

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195350027|ref|XP_002041543.1| GM16723 [Drosophila sechellia] gi|194123316|gb|EDW45359.1| GM16723 [Drosophila sechellia]

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 124/233 (53%), Gaps = 16/233 (6%)

Query: 7   ARQFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWL 66
           A QF R      +IN +RP+ P YE+A  + +++PK P      LP  + C K RA    
Sbjct: 18  ALQFLR---FRGKINIQRPKAPHYERARVVAVTQPKHPE-----LPKAKSCFKTRA---- 65

Query: 67  MERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDR 126
            ER    +EN +  I+A+E+    + S+++A  H SS+ A+    V+V   +  +  L  
Sbjct: 66  -ERTQQQQENPYNEIIAREVRNWLDHSRLVAFFHLSSITADDIFRVRVQLHKQNLH-LKS 123

Query: 127 YGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA-KVDVLLKTLKKTPQLTLMATIVDNR 185
           YG   IE+A+ NT+Y +I+PLF  +  I+ SP   K   LL+ +++ PQ+ L+  IV+  
Sbjct: 124 YGSKIIEQAVKNTRYEAIVPLFHSNHCIVFSPNPEKTAALLRIVRRVPQMVLLGGIVEET 183

Query: 186 LLSKTETEMYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHS 237
           +LS+ E   YA   +L   QA LVQT+S     L  QL  H  + V  LD H+
Sbjct: 184 MLSRNELVAYAQMPSLHAAQAQLVQTLSQAPGHLIQQLQAHQNSFVQVLDVHA 236

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195575473|ref|XP_002077602.1| GD23008 [Drosophila simulans] gi|194189611|gb|EDX03187.1| GD23008 [Drosophila simulans]

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 123/233 (52%), Gaps = 16/233 (6%)

Query: 7   ARQFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWL 66
           A QF R      +IN +RP+ P YE+A  + +++PK P      LP  + C K RA    
Sbjct: 18  ALQFLR---FRGKINIQRPKAPHYERARVVAVTQPKHPE-----LPKAKSCFKTRA---- 65

Query: 67  MERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDR 126
            ER    +EN +  I+A+E+    + S+++A  H +S+ A+    V+V   +  +  L  
Sbjct: 66  -ERTQQQQENPYNEIIAREVRNWLDHSRLVAFFHLNSITADDIFRVRVQLHKQNLH-LKS 123

Query: 127 YGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA-KVDVLLKTLKKTPQLTLMATIVDNR 185
           YG   IE+A+ NT+Y +I+PLF  +  I+ SP   K   LL+ +++ PQ+ L+  IV+  
Sbjct: 124 YGSKIIEQAVKNTRYEAIVPLFHSNHCIVFSPNPEKTAALLRIVRRVPQMVLLGGIVEET 183

Query: 186 LLSKTETEMYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHS 237
           +LS+ E   YA    L   QA LVQT+S     L  QL  H  + V  LD H+
Sbjct: 184 MLSRNELVAYAQMPGLQAAQAQLVQTLSQAPGHLIQQLQAHQNSFVQVLDVHA 236

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194853286|ref|XP_001968135.1| GG24703 [Drosophila erecta] gi|190660002|gb|EDV57194.1| GG24703 [Drosophila erecta]

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 125/233 (53%), Gaps = 16/233 (6%)

Query: 7   ARQFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWL 66
           A QF R      +IN +RP+ P YE+A  + +++PK+P      LP  + C K RA    
Sbjct: 18  ALQFLR---FRGKINIQRPKAPHYERARVVAVTQPKYPE-----LPKAKSCFKTRA---- 65

Query: 67  MERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDR 126
            ER    +EN +  I+A+E+    E S+++A  H +S+ A+    V+V   +  +  L  
Sbjct: 66  -ERTKQQQENPYNEIIAREVRNWLEHSRLVAFFHLNSITADDIFRVRVQLHKQNLH-LKS 123

Query: 127 YGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA-KVDVLLKTLKKTPQLTLMATIVDNR 185
           YG   IE+A+ NT+Y +I+PLF  +  I+ SP+  K   LL+ +++ PQ+ L+  IV+  
Sbjct: 124 YGSKIIEQAVKNTQYEAILPLFHSNHCIVFSPDTQKTAALLRIVRRVPQMVLLGGIVEET 183

Query: 186 LLSKTETEMYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHS 237
           +L++ +   YA    L   QA LVQT++     L  QL  H  + V  LD H+
Sbjct: 184 MLNRNQFVAYAQMPGLHAAQAQLVQTLNQAPGHLIQQLQAHQNSFVQVLDVHA 236

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
UNIPROTKB|Q29NV5	253	mRpL10 "39S ribosomal protein	0.571	0.818	0.336	2.6e-24
FB|FBgn0031231	248	mRpL10 "mitochondrial ribosoma	0.596	0.870	0.323	1.8e-23
UNIPROTKB|Q3MHY7	262	MRPL10 "39S ribosomal protein	0.447	0.618	0.256	4.6e-06
UNIPROTKB|H9L0I5	258	MRPL10 "Uncharacterized protei	0.513	0.720	0.205	1.3e-05
UNIPROTKB|F1RWJ0	262	MRPL10 "Uncharacterized protei	0.447	0.618	0.243	5.2e-05
MGI|MGI:1333801	262	Mrpl10 "mitochondrial ribosoma	0.447	0.618	0.243	5.2e-05
UNIPROTKB|Q7Z7H8	261	MRPL10 "39S ribosomal protein	0.428	0.593	0.235	0.00026
RGD|1588626	263	Mrpl10 "mitochondrial ribosoma	0.447	0.615	0.231	0.00045

UNIPROTKB|Q29NV5 mRpL10 "39S ribosomal protein L10, mitochondrial" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 74/220 (33%), Positives = 110/220 (50%)

Query:    19 RINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWLMERKGLNEENIF 78
             +IN +RP+ P YE+A  + +++PK+P      LP    C + RA     ER     EN +
Sbjct:    27 KINIQRPKEPHYERARVVAVTQPKYPE-----LPKARSCFQTRA-----ERTKEQLENPY 76

Query:    79 QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTN 138
               I+A+E+      SQ++AI H +S+ A+    V+V   +  +  L  YGR  I++A+T 
Sbjct:    77 NEIIAREVRNWLNHSQLVAIFHLNSITADEIFRVRVQLHKQNLH-LKSYGRKIIDQAVTG 135

Query:   139 TKYISIMPLFKVSEAIIVSP-EAKVDVXXXXXXXXXXXXXMATIVDNRLLSKTETEMYAT 197
             T Y +IMPLF  +  I+ SP + ++               +  IV+  LLS+ E   YA 
Sbjct:   136 TPYEAIMPLFHSNHCIVFSPNQQQIGALLKITRRVPQMVLLGGIVEKTLLSRNELMAYAQ 195

Query:   198 T-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQH 236
               NL   QA LVQT++  A  L   L  H   LV  LD H
Sbjct:   196 MPNLQGAQAQLVQTLNLAAGQLVQHLQTHQANLVQVLDVH 235

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=ISS

FB|FBgn0031231 mRpL10 "mitochondrial ribosomal protein L10" [Drosophila melanogaster (taxid:7227)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 75/232 (32%), Positives = 114/232 (49%)

Query:     7 ARQFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWL 66
             A QF R      +IN +RP+ P YE+A  + +++PK+P      LP  + C K RA    
Sbjct:    18 ALQFLR---FRGKINIQRPKAPHYERARVVAVTQPKYPE-----LPKAKSCFKTRA---- 65

Query:    67 MERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDR 126
              ER    +EN +  I+A+E+    + S+++A  H SS+ A+    V+V   +  +  L  
Sbjct:    66 -ERTQQQQENPYNEIIAREVRNWLDHSRLVAFFHLSSITADDIFRVRVQLHKQNLH-LKS 123

Query:   127 YGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA-KVDVXXXXXXXXXXXXXMATIVDNR 185
             YG   IE+A+ NT+Y +I+PLF  +  I+ SP+  K                +  IV+  
Sbjct:   124 YGSKIIEQAVKNTRYEAIVPLFHSNHCIVFSPDPEKTAALLRIVRRVPQMVLLGGIVEET 183

Query:   186 LLSKTETEMYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQH 236
             +LS+ +   YA    L   QA LVQT+S     L  QL  H  + V  LD H
Sbjct:   184 MLSRNQLVAYAQMPGLHAVQAQLVQTLSQAPGHLIQQLQAHQNSFVQVLDVH 235

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=ISS

UNIPROTKB|Q3MHY7 MRPL10 "39S ribosomal protein L10, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 129 (50.5 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 42/164 (25%), Positives = 76/164 (46%)

Query:    74 EENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIE 133
             EE     +L +EI A F +++MIA+    +M AE    ++   ++  + M   +    ++
Sbjct:    74 EETGLIRLLRREIAAVFRDNRMIAVCQNVAMSAEDKLLMRHQLRKHKILM-KVFPNQILK 132

Query:   134 KALTNTKYISIMPLFKVSEAIIVSPEAKVDVXXXXXXXXXXXXXMATIVDNRLLSKTETE 193
               L ++KY +++PLF     ++VS E KV               +   +D+ +LS+    
Sbjct:   133 PFLEDSKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKSVPFLPLLGGCIDDTILSRQGFI 192

Query:   194 MYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQH 236
              Y+   +LA  Q  LV  ++ +     S L HH   L + LDQ+
Sbjct:   193 NYSKLPSLALAQGELVGGLTLLTARTHSLLQHHPLQLTALLDQY 236

GO:0003735 "structural constituent of ribosome" evidence=IDA

GO:0006412 "translation" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|H9L0I5 MRPL10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 125 (49.1 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 39/190 (20%), Positives = 86/190 (45%)

Query:    48 EYLLPSHEKCQKARARQWLMERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAE 107
             EY+ P     ++  A +  +E +   EE  +  +L +++   F +++MIA+   +SM  E
Sbjct:    46 EYIAPRPAVPERCLAPRRKVEEE--EEEYGYARLLRQQVEEAFRDNRMIAVCQYNSMPGE 103

Query:   108 VNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEAKVDVXXX 167
                 ++   ++  + +        +   L+ ++Y +++PLF     ++VSPE K      
Sbjct:   104 DMVLMRHYLRKHNIEVKFVLNEI-VRPVLSQSRYKNLLPLFVSRNILLVSPETKAKEMLR 162

Query:   168 XXXXXXXXXXMATIVDNRLLSKTETEMYATT-NLATQQALLVQTISSVATSLTSQLNHHS 226
                       +   +D+ +LS+   E +A   +L T +   + T++ + +   S L H +
Sbjct:   163 VLKGVPQVNLLGACIDDTILSRQGVENFAKLPSLETSRGQTLGTLALLPSQTCSMLQHAA 222

Query:   227 TTLVSYLDQH 236
               L + L+ H
Sbjct:   223 AHLAALLEGH 232

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1RWJ0 MRPL10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 120 (47.3 bits), Expect = 5.2e-05, P = 5.2e-05
 Identities = 40/164 (24%), Positives = 74/164 (45%)

Query:    74 EENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIE 133
             EE     +L +EI A F +++MIA+    ++ AE    ++   ++  + M   +    ++
Sbjct:    74 EETGLVRLLRREIAAVFRDNRMIAVCQHVALSAEDKLLLRHQLRKHKILM-KIFPNQVLK 132

Query:   134 KALTNTKYISIMPLFKVSEAIIVSPEAKVDVXXXXXXXXXXXXXMATIVDNRLLSKTETE 193
               L  +KY +++PLF     ++VS E KV               +   +D+ +LS+    
Sbjct:   133 PFLEESKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKGIPFLPLLGGCIDDTILSRQGFI 192

Query:   194 MYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQH 236
              Y+   +LA  Q  LV  ++ +     S L H    L + LDQ+
Sbjct:   193 NYSKLPSLALVQGELVGGLTFLTAQTYSMLQHQPRQLTALLDQY 236

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

MGI|MGI:1333801 Mrpl10 "mitochondrial ribosomal protein L10" [Mus musculus (taxid:10090)]

 Score = 120 (47.3 bits), Expect = 5.2e-05, P = 5.2e-05
 Identities = 40/164 (24%), Positives = 75/164 (45%)

Query:    74 EENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIE 133
             EE+    +L ++I+A F +++MIA+    ++ AE    ++   ++  +  +  +    ++
Sbjct:    74 EESGLVRLLRQDIVAVFRDNRMIAVCQNVALSAEDKLLLRHQLRKHKI-FIKVFPSQVLK 132

Query:   134 KALTNTKYISIMPLFKVSEAIIVSPEAKVDVXXXXXXXXXXXXXMATIVDNRLLSKTETE 193
               L N+KY +++PLF     ++VS E KV               +   VD+ +LS+    
Sbjct:   133 PFLENSKYRNLLPLFVGHNLLLVSEEPKVKEMVRVLKSVPFLPLLGGCVDDTILSRQGLV 192

Query:   194 MYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQH 236
              YA   +L   Q  LV  ++ +       L H    L S LDQ+
Sbjct:   193 DYAKLPSLDQLQGQLVGGLTHLMAQTRYLLQHQPVQLTSLLDQY 236

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0005840 "ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|Q7Z7H8 MRPL10 "39S ribosomal protein L10, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 114 (45.2 bits), Expect = 0.00026, P = 0.00026
 Identities = 37/157 (23%), Positives = 73/157 (46%)

Query:    81 ILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTK 140
             +L +EI A F++++MIA+    ++ AE    ++   ++  + M   +    ++  L ++K
Sbjct:    81 LLRREIAAVFQDNRMIAVCQNVALSAEDKLLMRHQLRKHKILM-KVFPNQVLKPFLEDSK 139

Query:   141 YISIMPLFKVSEAIIVSPEAKVDVXXXXXXXXXXXXXMATIVDNRLLSKTETEMYATT-N 199
             Y +++PLF     ++VS E KV               +   +D+ +LS+     Y+   +
Sbjct:   140 YQNLLPLFVGHNMLLVSEEPKVKEMVRILRTVPFLPLLGGCIDDTILSRQGFINYSKLPS 199

Query:   200 LATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQH 236
             L   Q  LV  ++ +     S L H    L + LDQ+
Sbjct:   200 LPLVQGELVGGLTCLTAQTHSLLQHQPLQLTTLLDQY 236

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

RGD|1588626 Mrpl10 "mitochondrial ribosomal protein L10" [Rattus norvegicus (taxid:10116)]

 Score = 112 (44.5 bits), Expect = 0.00045, P = 0.00045
 Identities = 38/164 (23%), Positives = 74/164 (45%)

Query:    74 EENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIE 133
             EE+    +L ++I A F +++MIA+    ++ AE    ++   ++  +  +  +    ++
Sbjct:    75 EESGLIRLLRRDIAAVFRDNRMIAVCQNVALSAEDKLLLRHQLRKHKI-FIKVFPSQVLK 133

Query:   134 KALTNTKYISIMPLFKVSEAIIVSPEAKVDVXXXXXXXXXXXXXMATIVDNRLLSKTETE 193
               L ++KY +++PLF     ++VS E KV               +   +D+ +LS+    
Sbjct:   134 PFLEDSKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKSVPFLPLLGGCIDDTILSRQGFV 193

Query:   194 MYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQH 236
              YA   +L   Q  LV  ++ +       L H    L S LDQ+
Sbjct:   194 EYAKLPSLDRLQGELVGGLTHLTAQTRYLLQHQPVQLTSLLDQY 237


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.125   0.342    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      362       286   0.00086  115 3  11 23  0.43    34
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  178 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.23u 0.09s 22.32t   Elapsed:  00:00:20
  Total cpu time:  22.23u 0.09s 22.32t   Elapsed:  00:00:20
  Start:  Thu Aug 15 11:28:10 2013   End:  Thu Aug 15 11:28:30 2013

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISO

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q29NV5	RM10_DROPS	No assigned EC number	0.3495	0.6298	0.9011	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	362
cd05797	157	cd05797, Ribosomal_L10, Ribosomal protein L10 fami	1e-10
cd00379	155	cd00379, Ribosomal_L10_P0, Ribosomal protein L10 f	6e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-04
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	0.001
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	0.001
PHA03169	413	PHA03169, PHA03169, hypothetical protein; Provisio	0.002
PRK00099	172	PRK00099, rplJ, 50S ribosomal protein L10; Reviewe	0.002
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	0.003
PHA03325	418	PHA03325, PHA03325, nuclear-egress-membrane-like p	0.003
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.004

>gnl|CDD|240223 cd05797, Ribosomal_L10, Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 19/159 (11%)

Query: 81  ILAKEILARFEESQMIAIVHRSSM-LAEVN------REVKVVFKRVGMTMLDRYGRATIE 133
            +  E+  + +E++ + +     + +A++       RE  V  K V  T+         +
Sbjct: 7   EIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLA--------K 58

Query: 134 KALTNTKYISIMPLFKVSEAIIVSPEAKVD---VLLKTLKKTPQLTLMATIVDNRLLSKT 190
           +AL  T +  +  L K   AI  S E  V    VL    K+  +L +   +V+ ++L   
Sbjct: 59  RALEGTGFEDLDDLLKGPTAIAFSEEDPVAAAKVLKDFAKENKKLEIKGGVVEGKVLDAE 118

Query: 191 ETEMYAT-TNLATQQALLVQTISSVATSLTSQLNHHSTT 228
           E +  A   +     A L+  + + AT L   LN  ++ 
Sbjct: 119 EVKALAKLPSREELLAQLLGLLQAPATKLVRVLNAPASK 157

L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These bacteria and eukaryotic sequences have no additional C-terminal domain, present in other eukaryotic and archaeal orthologs. Length = 157

>gnl|CDD|238222 cd00379, Ribosomal_L10_P0, Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins

 Score = 51.0 bits (123), Expect = 6e-08
 Identities = 29/152 (19%), Positives = 60/152 (39%), Gaps = 7/152 (4%)

Query: 82  LAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRAT-IEKALTNTK 140
           L +E+    ++ + + +V    +      E++   +  G  +  + G+ T + +AL  T 
Sbjct: 6   LVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKL--KVGKNTLMRRALKGTG 63

Query: 141 YISIMPLFKVSEAIIVSPEAKVDV--LLKTLKKT-PQLTLMATIVDNRLLSKTETEMYAT 197
           +  + PL K   A+  + E  V+V  +LK   K   +L     +V  ++L        A 
Sbjct: 64  FEELKPLLKGPTALAFTNEDPVEVAKVLKDFAKENKKLFAKGGVVAGKVLDPAGVTALAK 123

Query: 198 T-NLATQQALLVQTISSVATSLTSQLNHHSTT 228
             +     A+L+  + +    L   LN     
Sbjct: 124 LPSREELLAMLIGLLKAPIAKLARLLNALGIG 155

In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 155

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 16/148 (10%)

Query: 231 SYLDQHSGTGGEG---------GSSASEALSGSETSGGSEGEATSNEASGESQESAKAAS 281
           S      G G E           +  +     S  +G S     ++ +S   + S   + 
Sbjct: 241 SSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSP 300

Query: 282 SSDNQGEATSSNEASGE---SQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAA 338
           SS   G A SS  AS     S+ES S+  +SSS+S   +A     S + S + S+    A
Sbjct: 301 SSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPA 360

Query: 339 PGD----KVTDGKETPSTSDTDGDKSSR 362
                  +    +   S + + G  + R
Sbjct: 361 DPSSPRKRPRPSRAPSSPAASAGRPTRR 388

Length = 1352

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 22/129 (17%), Positives = 37/129 (28%), Gaps = 12/129 (9%)

Query: 237 SGTGGEGGSSASEALSGSETSGG--------SEGEATSNEASGESQESAKAASSSDNQGE 288
           S T    GS+   A   S  +          S     S  +     E A   S + +  +
Sbjct: 102 SPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQ 161

Query: 289 ATSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQS---SEAAPGDKVTD 345
             SS       ++S       +S+   +S    +     S+   QS       P      
Sbjct: 162 QPSS-FLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQ 220

Query: 346 GKETPSTSD 354
              +P+T  
Sbjct: 221 QAPSPNTQQ 229

Length = 413

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 20/122 (16%), Positives = 35/122 (28%)

Query: 237 SGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEAS 296
           +       +SA   +   E +   +          E  +   A S          S  A 
Sbjct: 304 AAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAV 363

Query: 297 GESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTSDTD 356
            E+ E+D  +      +    A     ++AASA   + +  A         E P  +   
Sbjct: 364 EETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423

Query: 357 GD 358
            D
Sbjct: 424 PD 425

Length = 460

>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 16/112 (14%), Positives = 29/112 (25%), Gaps = 6/112 (5%)

Query: 236 HSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQ-----GEAT 290
           HS              +  E+   S  +  S+      ++S +      ++         
Sbjct: 134 HSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPP 193

Query: 291 SSNEASGESQESDSAKAASSSQSPT-ESAPGGEVSKAASATDSQSSEAAPGD 341
            S   +               QSPT + AP     +A    D  +     G 
Sbjct: 194 QSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGP 245

Length = 413

>gnl|CDD|234632 PRK00099, rplJ, 50S ribosomal protein L10; Reviewed

 Score = 37.8 bits (89), Expect = 0.002
 Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 27/168 (16%)

Query: 85  EILARFEESQMIAIVHRSSM-LAEVN------REVKVVFKRVGMTMLDRYGRATIEKALT 137
           E+  + +++Q   +     + +A++       RE  V +K V  T+  R        AL 
Sbjct: 12  ELAEKLKKAQSAVVADYRGLTVAQMTELRKKLREAGVEYKVVKNTLARR--------ALE 63

Query: 138 NTKYISIMPLFKVSEAIIVSPE-----AKVDVLLKTLKKTPQLTLMATIVDNRLLSKTET 192
            T +  +  L K   AI  S E     AKV  L    K   +L +    ++ ++L   E 
Sbjct: 64  GTGFEGLDDLLKGPTAIAFSYEDPVAAAKV--LKDFAKDNKKLEIKGGAIEGKVLDAEEV 121

Query: 193 EMYATTNLATQQ---ALLVQTISSVATSLTSQLNHHSTTLVSYLDQHS 237
           +  A   L +++   A L+  + + AT L   LN   + L   L   +
Sbjct: 122 KALAK--LPSREELLAKLLGVLQAPATKLAGVLNAPPSKLARVLKALA 167

Length = 172

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 11/118 (9%)

Query: 245 SSASEALSGSETSGGSEGEATSN---EASGESQESAKAASSSDNQGEATSSNEASGESQE 301
           S    A    E++   E  + ++   E  G+    A AA   D +  + +  E +  + E
Sbjct: 348 SVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASE 407

Query: 302 SDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTSDTDGDK 359
              A   +  + P ++AP         A   + + A PGD   +        D    +
Sbjct: 408 ---AHDETEPEVPEKAAP-----IPDPAKPDELAVAGPGDDPAEPDGIRRQDDFSSRR 457

Length = 460

>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein; Provisional

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 8/121 (6%)

Query: 234 DQHSGTGGEGGSSA-SEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSS 292
            +HS       S               +  E      + E++E A+ A+S+ ++G +++ 
Sbjct: 299 SEHSDPEPLPASLPPPPVRRPRVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQ 358

Query: 293 NEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPST 352
           N+ SG +    S  AASS     E    G      +     S    P   VT   E PS 
Sbjct: 359 NKDSGSTGPGSSLAAASS---FLEDDDFGSPPLDLTT----SLRHMPSPSVTSAPEPPSI 411

Query: 353 S 353
            
Sbjct: 412 P 412

Length = 418

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 5/122 (4%)

Query: 237 SGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEAS 296
                     +S     S +S   E   + + +S  S  +  +  +S +   +  S+ +S
Sbjct: 269 IWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSS 328

Query: 297 GESQESDSAKAASS-----SQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPS 351
             S    S  AA S     S+SP+ S P      ++     + S A      + G+ T  
Sbjct: 329 TSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRR 388

Query: 352 TS 353
            +
Sbjct: 389 RA 390

Length = 1352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	362
KOG4241|consensus	245		100.0
PRK00099	172	rplJ 50S ribosomal protein L10; Reviewed	100.0
cd05797	157	Ribosomal_L10 Ribosomal protein L10 family, L10 su	100.0
COG0244	175	RplJ Ribosomal protein L10 [Translation, ribosomal	100.0
cd00379	155	Ribosomal_L10_P0 Ribosomal protein L10 family; com	99.97
PF00466	100	Ribosomal_L10: Ribosomal protein L10; InterPro: IP	99.81
cd05796	163	Ribosomal_P0_like Ribosomal protein L10 family, P0	99.52
cd05795	175	Ribosomal_P0_L10e Ribosomal protein L10 family, P0	99.52
PRK04019	330	rplP0 acidic ribosomal protein P0; Validated	99.49
PTZ00135	310	60S acidic ribosomal protein P0; Provisional	99.38
PTZ00240	323	60S ribosomal protein P0; Provisional	98.61
KOG0816|consensus	223		97.01
KOG0815|consensus	245		96.61

>KOG4241|consensus

Probab=100.00  E-value=1.2e-45  Score=340.01  Aligned_cols=228  Identities=23%  Similarity=0.255  Sum_probs=211.5

Q ss_pred             hhhheeeeeeccc-ccccCCCCCchhHHHHHHhhCCCCCCCCCCCCCChhhhhhhHHHHHHHhhhcccccchHHHHHHHH
Q psy9196           7 ARQFSRTCVLERR-INTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWLMERKGLNEENIFQNILAKE   85 (362)
Q Consensus         7 ~~~~~~~~VR~g~-~ni~rpr~pHfeR~kl~AVteP~yppp~~~~~p~~e~C~~~~~~~~~e~~e~~~e~npy~~iLv~E   85 (362)
                      +|--+.|.+|+|. ++++|++.+||+|++++|||+  |+||..   +.++-|.++.+++       ++++++|..++.+|
T Consensus        14 ~r~pslq~~R~~~k~~~rr~~~~h~~r~~~~aVt~--~ipP~l---~k~~sc~ksert~-------~q~e~~l~~~~~re   81 (245)
T KOG4241|consen   14 VRSPSLQYPRPTPKHFKRRLFEAHLKRELPPAVTM--CIPPGL---IKRESCGKSERTK-------EQSEVELALSNLRE   81 (245)
T ss_pred             ccCccccccccCchhhhhcchhhhcccccCccccc--ccCCCC---ccccccCCCCCCc-------chhhhhHHHHHHHH
Confidence            4677899999996 666666667999999999999  555554   3348899986555       88999999999999


Q ss_pred             HHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc-hHHH
Q psy9196          86 ILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA-KVDV  164 (362)
Q Consensus        86 l~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep-~aK~  164 (362)
                      +..||+++++++|||+..++++|++..|++||++|++ ||.|+|.|++.++++|+|++|.|+|+|.+||+|++|+ ++|.
T Consensus        82 ~~~v~~~~R~~Avcq~~~v~a~d~~~~r~QLrk~ni~-~ksygnkIlk~~~~~t~y~~l~plfvgnh~ill~~d~~kik~  160 (245)
T KOG4241|consen   82 DWMVREEFRVMAVCQFLPVPARDLWFARNQLRKKNIE-FKSYGNKILKKIFDKTPYSSLNPLFVGNHAILLAKDISKIKS  160 (245)
T ss_pred             HHHHHhhhhheeeeecccCcHHHHHHHHHHHHhccch-hhhchHHHHHHHHhcCchhhhhhheeccceEEEcCChHHHHH
Confidence            9999999999999999999999999999999999999 9999999999999999999999999999999999997 9999


Q ss_pred             HHHHHhhCCCeEEEEEEEcCeecCHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCC
Q psy9196         165 LLKTLKKTPQLTLMATIVDNRLLSKTETEMYAT-TNLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEG  243 (362)
Q Consensus       165 llkf~Kk~pkL~LkGGiVEGkvLs~~eI~~LAk-PSlEeL~AqLvg~LqsPasqLvs~Lqa~~~~Lv~vLdq~~kqq~e~  243 (362)
                      |+.++++.|.+.++||+|++++++++++.+||| ||++.++|+||+.|....++|...|+.+++++..+||.|++.+.++
T Consensus       161 ~lri~r~vP~~~llgG~I~dtvlsRnqlv~yaklpsL~~vqa~lvQ~l~qq~~~l~~ql~~~qr~~~svld~h~k~~~~~  240 (245)
T KOG4241|consen  161 ILRITRKVPLVMLLGGRIVDTVLSRNQLVEYAKLPSLEDVQAHLVQLLGQQVAQLTIQLDTVQRHLPSVLDSHIKTNQEA  240 (245)
T ss_pred             HHHHHhhcchheecccchHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhHHHHHHHHHHHHhccchHhhccCCCCccc
Confidence            999999999999999999999999999999999 9999999999999999999999999999999999999999998876


Q ss_pred             CCCc
Q psy9196         244 GSSA  247 (362)
Q Consensus       244 ~~~~  247 (362)
                      ...+
T Consensus       241 ~~Pk  244 (245)
T KOG4241|consen  241 KKPK  244 (245)
T ss_pred             cCCC
Confidence            5443

>PRK00099 rplJ 50S ribosomal protein L10; Reviewed

Probab=100.00  E-value=1.2e-39  Score=291.48  Aligned_cols=164  Identities=17%  Similarity=0.216  Sum_probs=157.5

Q ss_pred             hHHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEE
Q psy9196          77 IFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIV  156 (362)
Q Consensus        77 py~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIaf  156 (362)
                      .-+..++++|+++|+++++++|++|+||+++++++||++||++|+. |+|+||||+++|+++++|+.|.++|+|+|+|+|
T Consensus         4 ~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~-~~V~KNtL~~~Al~~~~~~~l~~~l~G~~al~f   82 (172)
T PRK00099          4 EEKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLREAGVE-YKVVKNTLARRALEGTGFEGLDDLLKGPTAIAF   82 (172)
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCE-EEEehhHHHHHHHhcCCchhhhhhCcCCeEEEE
Confidence            3466799999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             cC-Cc--hHHHHHHHHhhCCCeEEEEEEEcCeecCHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy9196         157 SP-EA--KVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYAT-TNLATQQALLVQTISSVATSLTSQLNHHSTTLVSY  232 (362)
Q Consensus       157 S~-ep--~aK~llkf~Kk~pkL~LkGGiVEGkvLs~~eI~~LAk-PSlEeL~AqLvg~LqsPasqLvs~Lqa~~~~Lv~v  232 (362)
                      ++ ||  .+|.+.+|.|++|++.|+||++||++|+.++|++||+ ||+++|++||+|+|++|+++|+++|++++++|+++
T Consensus        83 s~~d~~~~~k~l~~f~K~~~~~~l~gg~~eg~~l~~~~i~~la~LPs~~el~a~l~~~l~~p~~~l~~~L~~~~~~l~~~  162 (172)
T PRK00099         83 SYEDPVAAAKVLKDFAKDNKKLEIKGGAIEGKVLDAEEVKALAKLPSREELLAKLLGVLQAPATKLAGVLNAPPSKLARV  162 (172)
T ss_pred             eCCChHHHHHHHHHHHhhCcCceEEEEEECCEEcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            95 45  6788889999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHhccC
Q psy9196         233 LDQHSGTGG  241 (362)
Q Consensus       233 Ldq~~kqq~  241 (362)
                      |+++.++++
T Consensus       163 L~~~~~~~~  171 (172)
T PRK00099        163 LKALAEKKE  171 (172)
T ss_pred             HHHHHHhhc
Confidence            999999874

>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10

Probab=100.00  E-value=3.8e-37  Score=270.82  Aligned_cols=150  Identities=19%  Similarity=0.263  Sum_probs=144.1

Q ss_pred             hHHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEE
Q psy9196          77 IFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIV  156 (362)
Q Consensus        77 py~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIaf  156 (362)
                      ..+..++++|+++|+++++++|+||+||+++++++||++||++|++ |+|+||||+|+|+++++|+.|.++|+|||+++|
T Consensus         3 ~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~-~~V~KNtL~~~Al~~t~~~~l~~~l~G~~al~f   81 (157)
T cd05797           3 EKKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELREAGVK-LKVVKNTLAKRALEGTGFEDLDDLLKGPTAIAF   81 (157)
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCE-EEEehhHHHHHHHhcCCchhhHhhCcCCEEEEE
Confidence            4567899999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             cCC-c--hHHHHHHHHhhCCCeEEEEEEEcCeecCHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy9196         157 SPE-A--KVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYAT-TNLATQQALLVQTISSVATSLTSQLNHHST  227 (362)
Q Consensus       157 S~e-p--~aK~llkf~Kk~pkL~LkGGiVEGkvLs~~eI~~LAk-PSlEeL~AqLvg~LqsPasqLvs~Lqa~~~  227 (362)
                      +++ |  .+|.+.+|.|+++++.|+||++||++|+.++|++||+ ||+|+|++||+|+|++|+++|+++|+++++
T Consensus        82 ~~~d~~~~~k~l~~f~k~~~~~~~~gg~~eg~~l~~~~v~~la~LPs~e~l~a~l~~~l~~p~~~l~~~L~~~~~  156 (157)
T cd05797          82 SEEDPVAAAKVLKDFAKENKKLEIKGGVVEGKVLDAEEVKALAKLPSREELLAQLLGLLQAPATKLVRVLNAPAS  156 (157)
T ss_pred             eCCChHHHHHHHHHHHHhCCCcEEEEEEECCEecCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            976 5  6788899999999999999999999999999999999 999999999999999999999999998864

L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in

>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.6e-32  Score=248.46  Aligned_cols=164  Identities=17%  Similarity=0.190  Sum_probs=157.2

Q ss_pred             hHHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEE
Q psy9196          77 IFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIV  156 (362)
Q Consensus        77 py~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIaf  156 (362)
                      ..+..++++|++.|+++++++|+||+||++.++++||++||..|+. |+|+||||+++|+++++++.|.++|+|||+|+|
T Consensus         6 e~K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~~g~~-lkV~KNtL~~rAl~~~~~e~l~~~l~Gp~ai~f   84 (175)
T COG0244           6 EWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAK-LKVVKNTLLRRALEEAGLEGLDDLLKGPTAIAF   84 (175)
T ss_pred             HHHHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHhCCcE-EEEEhhHHHHHHHHhcchhhHHHhccCCeEEEE
Confidence            5677899999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             cC-Cc--hHHHHHHHHhhC-CCeEEEEEEEcCeecCHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy9196         157 SP-EA--KVDVLLKTLKKT-PQLTLMATIVDNRLLSKTETEMYAT-TNLATQQALLVQTISSVATSLTSQLNHHSTTLVS  231 (362)
Q Consensus       157 S~-ep--~aK~llkf~Kk~-pkL~LkGGiVEGkvLs~~eI~~LAk-PSlEeL~AqLvg~LqsPasqLvs~Lqa~~~~Lv~  231 (362)
                      ++ ||  .+|.+.+|.|.+ +.+.++||++||..++..+++++++ |++++++++++|.|++|.+++++.|++.+..+.+
T Consensus        85 s~~dp~~~~K~~~~f~k~~~~~~~~~~~~~eg~~l~~~~v~~~aklp~~~el~~~l~g~~~ap~~~~~~~L~a~~~~~~~  164 (175)
T COG0244          85 SNEDPVAAAKLLKDFAKEAGDKAPIKGGVPEGKVLGAAEVIALAKLPSKEELVVMLLGVLQAPATKLLRALKAVPDKVGL  164 (175)
T ss_pred             ecCCHHHHHHHHHHHhhhhcccceEEEEEecCcccCHHHHHHHhcCCcHHHHHHHHHHhhHhhHHHHHHHHhccHHHHhh
Confidence            96 56  688899999996 9999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             HHHHHHhccC
Q psy9196         232 YLDQHSGTGG  241 (362)
Q Consensus       232 vLdq~~kqq~  241 (362)
                      .+.++.+++.
T Consensus       165 ~~~a~~~~g~  174 (175)
T COG0244         165 KLLAAYEKGV  174 (175)
T ss_pred             HHHHhhccCC
Confidence            9999887653

>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins

Probab=99.97  E-value=5.7e-31  Score=228.99  Aligned_cols=148  Identities=18%  Similarity=0.238  Sum_probs=141.3

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcC
Q psy9196          79 QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSP  158 (362)
Q Consensus        79 ~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~  158 (362)
                      +..++++++++|+++++++|+||+||+++++.+||++|++.|++ ++|+||+||++||++++|+++.++|+|+++|+|++
T Consensus         3 K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~-~~v~KNtl~~~Al~~t~~~~~~~~l~G~~~~~f~~   81 (155)
T cd00379           3 KEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAK-LKVGKNTLMRRALKGTGFEELKPLLKGPTALAFTN   81 (155)
T ss_pred             hHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCE-EEEEehHHHHHHHcCCCccchhhhCcCCEEEEEeC
Confidence            56799999999999999999999999999999999999999999 99999999999999999999999999999999997


Q ss_pred             C-c--hHHHHHHHHhhCCCeEEEEEEEcCeecCHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy9196         159 E-A--KVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYAT-TNLATQQALLVQTISSVATSLTSQLNHHST  227 (362)
Q Consensus       159 e-p--~aK~llkf~Kk~pkL~LkGGiVEGkvLs~~eI~~LAk-PSlEeL~AqLvg~LqsPasqLvs~Lqa~~~  227 (362)
                      + |  ..|.+.+|.+.++++.++||+++|++++++++..|++ |++++++++++++|++|+.++++.|++++.
T Consensus        82 ~~~~~~~k~~~~~~k~~~~~~~k~g~~~~~v~~~~~~~~l~~lp~~~~~~~~~v~~l~~~~~~l~~~L~~~~~  154 (155)
T cd00379          82 EDPVEVAKVLKDFAKENKKLFAKGGVVAGKVLDPAGVTALAKLPSREELLAMLIGLLKAPIAKLARLLNALGI  154 (155)
T ss_pred             CChHHHHHHHHHHHHhCCCceEEEEEEcCEecCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            6 4  5778889999999999999999999999999999999 999999999999999999999999988653

In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho

>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.81  E-value=1.7e-19  Score=147.38  Aligned_cols=93  Identities=23%  Similarity=0.311  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCC-CCcCccccceEEE
Q psy9196          77 IFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYI-SIMPLFKVSEAII  155 (362)
Q Consensus        77 py~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e-~L~plF~GpTAIa  155 (362)
                      .-+..++++|+++|+++++++|++|+||++.++++||++||.+|+. ++|+||+|+++|+++++++ .|.++|+|+|+++
T Consensus         4 ~~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~-~~v~KN~l~~~Al~~~~~~~~l~~~l~G~~~~i   82 (100)
T PF00466_consen    4 EKKEEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKKGGK-FKVVKNTLMKKALKNTGFEEALSPLLKGPTALI   82 (100)
T ss_dssp             HHHHHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHHTEE-EEECSHHHHHHHHHHHHTSSSSSCCTSSSEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcCcE-EEEecHHHHHHHHhcCccccCccccccCCEEEE
Confidence            4467799999999999999999999999999999999999999999 9999999999999999999 9999999999999


Q ss_pred             EcCCc---hHHHHHHHHh
Q psy9196         156 VSPEA---KVDVLLKTLK  170 (362)
Q Consensus       156 fS~ep---~aK~llkf~K  170 (362)
                      |++++   .+|.+.+|.|
T Consensus        83 f~~~d~~~~~k~l~~~~K  100 (100)
T PF00466_consen   83 FSNEDPFEIAKILKKFAK  100 (100)
T ss_dssp             EESSSHHHHHHHHHHSTT
T ss_pred             EECCCHHHHHHHHHHhcC
Confidence            99653   4555555543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....

>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4)

Probab=99.52  E-value=2.5e-14  Score=128.03  Aligned_cols=87  Identities=11%  Similarity=0.144  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCC-------CCCCcCccccc
Q psy9196          79 QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTK-------YISIMPLFKVS  151 (362)
Q Consensus        79 ~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~-------~e~L~plF~Gp  151 (362)
                      +..++++|++.|++++.++|++|.||++.++++||+.||..  . |+|+|||||++||++++       ++.|.++|+|+
T Consensus         3 K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~~--~-~~v~KNtl~~~Al~~~~~~~~~~~~~~L~~~l~G~   79 (163)
T cd05796           3 KQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKDS--R-FFFGKNKVMQVALGRTPEDEYKPNLHKLSKYLKGQ   79 (163)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcCC--E-EEEEchHHHHHHHhhCccccccccHHHHHHHhCCC
Confidence            56699999999999999999999999999999999999975  8 99999999999999886       66799999999


Q ss_pred             eEEEEcCC-c-h-HHHHHHH
Q psy9196         152 EAIIVSPE-A-K-VDVLLKT  168 (362)
Q Consensus       152 TAIafS~e-p-~-aK~llkf  168 (362)
                      ++|+|+++ | . ++.+.+|
T Consensus        80 ~~lift~~dp~~v~k~l~~~   99 (163)
T cd05796          80 VGLLFTNEPPEEVIEYFDSY   99 (163)
T ss_pred             EEEEEECCCHHHHHHHHHHc
Confidence            99999975 4 3 3444444

MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS

>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

Probab=99.52  E-value=3e-14  Score=128.88  Aligned_cols=88  Identities=11%  Similarity=0.164  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCC-----CCCCcCccccceE
Q psy9196          79 QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTK-----YISIMPLFKVSEA  153 (362)
Q Consensus        79 ~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~-----~e~L~plF~GpTA  153 (362)
                      +..++++|++.|++++.++|++|.||++.++.+||+.||.. +. |+|+||+||++||++++     ++.|.++|+|+++
T Consensus         3 K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~-~~-~~v~KNtL~~~Al~~~~~~~~~~~~L~~~l~G~~~   80 (175)
T cd05795           3 KKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGK-AE-ILMGKNTLIRRALRNLGDENPELEKLLPYLKGNVG   80 (175)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhCC-CE-EEEechHHHHHHHHhcccccccHHHHHHHhcCCEE
Confidence            56699999999999999999999999999999999999985 78 99999999999999987     5678899999999


Q ss_pred             EEEcCC-c-h-HHHHHHH
Q psy9196         154 IIVSPE-A-K-VDVLLKT  168 (362)
Q Consensus       154 IafS~e-p-~-aK~llkf  168 (362)
                      ++|+++ | . +|.+.+|
T Consensus        81 liFt~~dp~~v~k~l~~~   98 (175)
T cd05795          81 FIFTNGDPFEIRKILEEN   98 (175)
T ss_pred             EEEECCCHHHHHHHHHHc
Confidence            999975 4 3 4444444

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.

>PRK04019 rplP0 acidic ribosomal protein P0; Validated

Probab=99.49  E-value=9e-14  Score=137.05  Aligned_cols=90  Identities=16%  Similarity=0.178  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCC---CCCCcCccccceE
Q psy9196          77 IFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTK---YISIMPLFKVSEA  153 (362)
Q Consensus        77 py~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~---~e~L~plF~GpTA  153 (362)
                      ..+..++++|++.|++++.++|++|.||++.++++||+.||.. +. |+|+|||||++||++++   ++.|.++|+|+++
T Consensus         6 e~K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~~-~~-~~v~KNtL~~~Al~~~~~~~~~~L~~~l~G~~a   83 (330)
T PRK04019          6 EWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRGK-AE-LKVSKNTLIKRALEEAGEEDLEKLEDYLEGQVA   83 (330)
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHcC-CE-EEEEehHHHHHHHHhcCcccHHHHHhhccCCEE
Confidence            4577799999999999999999999999999999999999986 88 99999999999999999   8899999999999


Q ss_pred             EEEcCC-c-h-HHHHHHH
Q psy9196         154 IIVSPE-A-K-VDVLLKT  168 (362)
Q Consensus       154 IafS~e-p-~-aK~llkf  168 (362)
                      |+|+++ | . .|.+.+|
T Consensus        84 lift~~dp~~v~k~l~~~  101 (330)
T PRK04019         84 LIFTNMNPFKLYKLLEKS  101 (330)
T ss_pred             EEEECCCHHHHHHHHHHc
Confidence            999975 4 3 4444443

>PTZ00135 60S acidic ribosomal protein P0; Provisional

Probab=99.38  E-value=1.6e-12  Score=127.56  Aligned_cols=89  Identities=15%  Similarity=0.199  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcC-----CCCCCcCccccceE
Q psy9196          79 QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNT-----KYISIMPLFKVSEA  153 (362)
Q Consensus        79 ~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T-----~~e~L~plF~GpTA  153 (362)
                      +..++++|++.|++++.++|++|.||++.++++||+.||.. .. |+|.||||||+||+++     +++.|.++|+|+++
T Consensus        10 K~~~v~~l~e~l~~y~~v~vv~~~nv~s~ql~~iR~~LR~~-a~-~~vgKNTL~r~AL~~~~~~~~~l~~L~~~LkG~~g   87 (310)
T PTZ00135         10 KKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGK-AE-LLMGKNTLIRKALKQRLEELPELEKLLPHVKGNVG   87 (310)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcC-CE-EEEEehHHHHHHHhhCcccccChHHHHhhccCCEE
Confidence            67799999999999999999999999999999999999985 68 9999999999999987     47789999999999


Q ss_pred             EEEcCC-c-h-HHHHHHHH
Q psy9196         154 IIVSPE-A-K-VDVLLKTL  169 (362)
Q Consensus       154 IafS~e-p-~-aK~llkf~  169 (362)
                      ++|+++ + . .+.+.+|.
T Consensus        88 liFTn~dp~ev~k~l~~~k  106 (310)
T PTZ00135         88 FVFTKDDLFEVKPVILENK  106 (310)
T ss_pred             EEEECCCHHHHHHHHHHcC
Confidence            999965 4 3 44555554

>PTZ00240 60S ribosomal protein P0; Provisional

Probab=98.61  E-value=1.8e-07  Score=92.76  Aligned_cols=87  Identities=7%  Similarity=0.129  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCC-------CCC-------
Q psy9196          79 QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKY-------ISI-------  144 (362)
Q Consensus        79 ~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~-------e~L-------  144 (362)
                      +..++++|++.|++.+.|+|+++.++...++.++|+.||... . +.+-||||||+||..+..       +.|       
T Consensus         8 K~~~v~~l~~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lrg~a-~-~~~GKNtlm~~AL~~~~~~~~~~~~~~ll~~~~~~   85 (323)
T PTZ00240          8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKA-E-FVMGKKTLQAKIVEKRAQAKKASAEAKLFNDQCEE   85 (323)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEecCCCcHHHHHHHHHhhCCc-E-EEEecHHHHHHHHhhccccccchhHHHHhhhhccc
Confidence            667999999999999999999999999999999999999544 7 899999999999997765       345       


Q ss_pred             cCccccceEEEEcCCc--hHHHHHH
Q psy9196         145 MPLFKVSEAIIVSPEA--KVDVLLK  167 (362)
Q Consensus       145 ~plF~GpTAIafS~ep--~aK~llk  167 (362)
                      .++++|+++++|++++  .++.+++
T Consensus        86 ~~~l~GnvgliFTn~~p~ev~~~l~  110 (323)
T PTZ00240         86 KNLLSGNTGLIFTNNEVQEITSVLD  110 (323)
T ss_pred             cccccCCEEEEEeCCCHHHHHHHHH
Confidence            3899999999999764  5665554

>KOG0816|consensus

Probab=97.01  E-value=0.0034  Score=59.21  Aligned_cols=80  Identities=14%  Similarity=0.165  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCC-------CCCcCcccc
Q psy9196          78 FQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKY-------ISIMPLFKV  150 (362)
Q Consensus        78 y~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~-------e~L~plF~G  150 (362)
                      .++.|+++|++-++..+.++|++..+|.-.-+.++|.+++  |.. |-.-||.+|..||-.++-       ..+..+++|
T Consensus        22 ~K~~i~~~ir~~vd~Y~~v~Vf~~~nMRn~~lk~iR~~~k--~sr-~f~GknKVm~vaLG~~~~dE~~~~l~klskll~G   98 (223)
T KOG0816|consen   22 KKEAIVEEIREAVDKYPYVFVFEVPNMRNTTLKEIRQDFK--NSR-FFFGKNKVMQVALGRSREDEYKENLYKLSKLLKG   98 (223)
T ss_pred             HHHHHHHHHHHHHhhCCeEEEEEcCCcchHHHHHHHHHhh--ccc-eecchhhHHHHHhcCCchhhHHHHHHHhhhhccC
Confidence            4667999999999999999999999999999999999999  888 889999999999998873       346778999


Q ss_pred             ceEEEEcCCc
Q psy9196         151 SEAIIVSPEA  160 (362)
Q Consensus       151 pTAIafS~ep  160 (362)
                      .+.++|.+.+
T Consensus        99 ~~GLlFTd~~  108 (223)
T KOG0816|consen   99 SVGLLFTDMS  108 (223)
T ss_pred             ceEEEecCCC
Confidence            9999999753

>KOG0815|consensus

Probab=96.61  E-value=0.0062  Score=58.21  Aligned_cols=79  Identities=9%  Similarity=0.124  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCC-----CCCCcCccccceEE
Q psy9196          80 NILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTK-----YISIMPLFKVSEAI  154 (362)
Q Consensus        80 ~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~-----~e~L~plF~GpTAI  154 (362)
                      ...-..+++.|++..-++++.-......+|..+|++||-.- . +-.-||+++|+|+.+..     ++.++|++.|++.+
T Consensus        11 ~~y~~K~~~L~~~y~~~~~v~~dnv~s~ql~~ir~~lrg~a-~-vlmgkntm~rrair~~~~~~~~~~~llp~~~g~vgf   88 (245)
T KOG0815|consen   11 AVYFTKLRQLFEEYPKCFVVGADNVGSTQLQNIRKQLRGDA-V-VLMGKNTMMRRAIRGHLENNPALEKLLPVVKGNVGF   88 (245)
T ss_pred             HHHHHHHHHHHHhcCceEEEeecchhhHHHHHHHHHhcCce-e-eeechhHHHHHHHHhccCCcHHHHhhccceeeceeE
Confidence            34556778899999999999999999999999999999644 4 68899999999998654     46799999999999


Q ss_pred             EEcCCc
Q psy9196         155 IVSPEA  160 (362)
Q Consensus       155 afS~ep  160 (362)
                      +|.+++
T Consensus        89 vftk~~   94 (245)
T KOG0815|consen   89 VFTKGD   94 (245)
T ss_pred             EEEecc
Confidence            999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	362
2j01_J	173	50S ribosomal protein L10; ribosome, tRNA, paromom	100.0
1zav_A	180	50S ribosomal protein L10; ribosome structure and	100.0
3sgf_H	165	50S ribosomal protein L10; typeii release factor b	100.0
3a1y_G	284	Acidic ribosomal protein P0; stalk, helix SPIN, ri	99.7
1vq8_G	348	Acidic ribosomal protein P0 homolog; ribosome 50S,	99.65
3jsy_A	213	Acidic ribosomal protein P0 homolog; ribonucleopro	99.59
3j21_k	339	Acidic ribosomal protein P0 homolog; archaea, arch	99.55
3u5i_q	312	A0, L10E, 60S acidic ribosomal protein P0; transla	99.54
2zkr_g	317	60S acidic ribosomal protein P0; protein-RNA compl	99.5
3iz5_s	319	60S acidic ribosomal protein P0 (L10P); eukaryotic	99.49

>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A

Probab=100.00  E-value=1.3e-40  Score=299.39  Aligned_cols=164  Identities=16%  Similarity=0.208  Sum_probs=157.2

Q ss_pred             hHHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHc---CCeeEEEechhHHHHHHhcCCCCCCcCccccceE
Q psy9196          77 IFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRV---GMTMLDRYGRATIEKALTNTKYISIMPLFKVSEA  153 (362)
Q Consensus        77 py~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~---gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTA  153 (362)
                      .-+..++++|+++|+++++++|+||+||+++++++||++||++   |+. |+|+||||+++|+++++|++|.++|+|||+
T Consensus         6 ~~K~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~~~~g~~-~~V~KNtL~~~Al~~~~~~~L~~~l~G~~a   84 (180)
T 1zav_A            6 QQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGAR-FRVVKNTLLNLALKNAEYEGYEEFLKGPTA   84 (180)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEE-EEEECHHHHHHHHHHTTCCSCGGGCSSSEE
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcccCCeE-EEEehHHHHHHHHccCChhhHHHhCcCCEE
Confidence            3467799999999999999999999999999999999999999   999 999999999999999999999999999999


Q ss_pred             EEEcC--Cc--hHHHHHHHHhhC--CCeEEEEEEEcCeecCHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy9196         154 IIVSP--EA--KVDVLLKTLKKT--PQLTLMATIVDNRLLSKTETEMYAT-TNLATQQALLVQTISSVATSLTSQLNHHS  226 (362)
Q Consensus       154 IafS~--ep--~aK~llkf~Kk~--pkL~LkGGiVEGkvLs~~eI~~LAk-PSlEeL~AqLvg~LqsPasqLvs~Lqa~~  226 (362)
                      |+|++  ||  .+|.+.+|.|++  ++|.|+||++||++|+.++|++||+ ||+|+|++||+|+|++|+++++++|++++
T Consensus        85 ~~fs~~~dp~~~ak~l~~f~k~~~~~~l~ikgg~~eg~~~~~~~v~~la~LPs~eel~a~l~g~l~ap~~~l~~~l~~~~  164 (180)
T 1zav_A           85 VLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSGIL  164 (180)
T ss_dssp             EEEESSSCTHHHHHHHHHHHHHTTCCGGGEEEEEETTEEEEHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCHHHHHHHHHHHHHhCCCCCeEEEEEEECCEEcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99995  55  578888999999  9999999999999999999999999 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccC
Q psy9196         227 TTLVSYLDQHSGTGG  241 (362)
Q Consensus       227 ~~Lv~vLdq~~kqq~  241 (362)
                      ++|+++|++|.+|++
T Consensus       165 ~~l~~~l~a~~~k~~  179 (180)
T 1zav_A          165 RNLVYVLNAIKEKKS  179 (180)
T ss_dssp             HHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999999875

>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*

Probab=100.00  E-value=1.7e-39  Score=289.20  Aligned_cols=153  Identities=12%  Similarity=0.164  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcC
Q psy9196          79 QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSP  158 (362)
Q Consensus        79 ~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~  158 (362)
                      +..++++|+++|+++++++|+||+||+++++++||++||++|++ |+|+||||+++|+++++|++|.++|+|||+|+|++
T Consensus         8 K~~~V~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~g~~-~~V~KNtL~~~Al~~~~~~~L~~~l~G~tai~fs~   86 (165)
T 3sgf_H            8 KQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVY-MRVVRNTLLRRAVEGTPFECLKDAFVGPTLIAYSM   86 (165)
T ss_dssp             HHHHHHHHHHHHSCSCEEECCCTTCCHHHHHHHTTTTTSSCCSS-EECCCCTTTTTTTTTCTTTCTTCSTTCCSCCCEEE
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHHcCcE-EEEECcHHHHHHHhcCCcchhHHhCcCCEEEEEeC
Confidence            45699999999999999999999999999999999999999999 99999999999999999999999999999999994


Q ss_pred             -Cc--hHHHHHHHHhhCCCeEEEEEEEcCeecCHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9196         159 -EA--KVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYAT-TNLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLD  234 (362)
Q Consensus       159 -ep--~aK~llkf~Kk~pkL~LkGGiVEGkvLs~~eI~~LAk-PSlEeL~AqLvg~LqsPasqLvs~Lqa~~~~Lv~vLd  234 (362)
                       ||  .+|.+.+|.|++++|.|+||++||++|+.++|++||+ ||+|+|++||+|+|++|++          .+|+++|+
T Consensus        87 ~dp~~~aK~l~~f~K~~~~l~ikgg~~eg~~~~~~~v~~la~LPs~eel~a~l~g~l~ap~~----------~~l~~~l~  156 (165)
T 3sgf_H           87 EHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASA----------GKLVRTLA  156 (165)
T ss_dssp             ECSSCSHHHHHHHHHHGGGSSSCCTTCCCCTTTTCCCCCCCTTTTTTCTHHHHTTTTTTTST----------TTTTTTTT
T ss_pred             CCHHHHHHHHHHHHHhCCCcEEEEEEEcCEEeCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH----------HHHHHHHH
Confidence             56  6888999999999999999999999999999999999 9999999999999999987          15666777


Q ss_pred             HHHhccCC
Q psy9196         235 QHSGTGGE  242 (362)
Q Consensus       235 q~~kqq~e  242 (362)
                      ++.+|+++
T Consensus       157 a~~~~k~~  164 (165)
T 3sgf_H          157 AVRDAKEA  164 (165)
T ss_dssp             SGGGTCC-
T ss_pred             HHHHhhcc
Confidence            78888754

>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}

Probab=99.70  E-value=6.8e-18  Score=161.49  Aligned_cols=114  Identities=16%  Similarity=0.158  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCC-------CCCCcCccccc
Q psy9196          79 QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTK-------YISIMPLFKVS  151 (362)
Q Consensus        79 ~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~-------~e~L~plF~Gp  151 (362)
                      +..++++|+++|++++.++|++|+||++.++++||++||+.|+. |+|+||||||+|+++++       |+.|.++|+|+
T Consensus         8 K~~~v~el~~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~-~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~~l~G~   86 (284)
T 3a1y_G            8 KKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGL-LRVSRNTLIELAIKKAAKELGKPELEKLVEYIDRG   86 (284)
T ss_dssp             TTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEE-EEECSSSSCCHHHHHHHTTCSCSSTTSSSCCCCTT
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcE-EEEeHHHHHHHHHhhCccccccccHHHHhhhcCCC
Confidence            44599999999999999999999999999999999999999999 99999999999999987       99999999999


Q ss_pred             eEEEEcCC-c--hHHHHHHHHhhCCCeEEEEEEEcCeecCHHHHHHh
Q psy9196         152 EAIIVSPE-A--KVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMY  195 (362)
Q Consensus       152 TAIafS~e-p--~aK~llkf~Kk~pkL~LkGGiVEGkvLs~~eI~~L  195 (362)
                      ++|+|+++ |  .+|.+.+|.  .+.+...|++.+..+.-+.+-..+
T Consensus        87 ~al~Ft~~dp~~vak~l~~f~--~~~~ar~Gaia~~dv~ip~g~~~~  131 (284)
T 3a1y_G           87 AGILVTNMNPFKLYKFLQQNR--QPAPAKPGAVVPKDVVVPAGPTPL  131 (284)
T ss_dssp             EEEEEESSCHHHHHHHHHHCC--CC----------------------
T ss_pred             EEEEEECCCHHHHHHHHHHhc--chhhhhcCCccceeEEecCCCCCC
Confidence            99999965 4  345555543  578899999999999888776444

>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...

Probab=99.65  E-value=2.9e-17  Score=161.71  Aligned_cols=119  Identities=9%  Similarity=0.088  Sum_probs=26.7

Q ss_pred             cchHHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCC--CCCCcCccccce
Q psy9196          75 ENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTK--YISIMPLFKVSE  152 (362)
Q Consensus        75 ~npy~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~--~e~L~plF~GpT  152 (362)
                      ....+..++++|++.|++++.++|++|+||++.++++||++||+. +. |+|+||||||+|+++++  |+.|.++|+|||
T Consensus        12 ~~e~K~~~V~eL~e~l~~~~~v~vvdy~GLtv~ql~~LR~~lR~~-~~-~~V~KNTL~r~Al~~~~~~le~L~~~LkG~t   89 (348)
T 1vq8_G           12 IPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGT-AE-LRVSRNTLLERALDDVDDGLEDLNGYITGQV   89 (348)
T ss_dssp             CCHHHHHHHHHHHHHHHC-----------------------------------CHHHHHHHHTC----------------
T ss_pred             cHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHHhc-ce-EEEeHHHHHHHHHHhCCcchHHHHHhccCCE
Confidence            446788899999999999999999999999999999999999998 89 99999999999999999  899999999999


Q ss_pred             EEEEcCC-c--hHHHHHHHHhhCCCeEEEEEEEcCeecCHHHHHHhcC
Q psy9196         153 AIIVSPE-A--KVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYAT  197 (362)
Q Consensus       153 AIafS~e-p--~aK~llkf~Kk~pkL~LkGGiVEGkvLs~~eI~~LAk  197 (362)
                      +|+|+++ |  .+|.+.+|.+  +.+...|++.++.++-+.+...+.-
T Consensus        90 al~Ft~~Dp~~vaK~l~~f~~--~~pAr~GaiAp~dV~IpaG~t~~~P  135 (348)
T 1vq8_G           90 GLIGTDDNPFSLFQELEASKT--PAPIGAGEVAPNDIVIPEGDTGVDP  135 (348)
T ss_dssp             ------------------------------------------------
T ss_pred             EEEEeCCCHHHHHHHHHHhcc--cchhhcCCcCCceEEeCCCCCCCCC
Confidence            9999964 5  5577777754  5667899999999999988866644

>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}

Probab=99.59  E-value=1.8e-15  Score=139.57  Aligned_cols=89  Identities=18%  Similarity=0.199  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcC-------CCCCCcCcccc
Q psy9196          78 FQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNT-------KYISIMPLFKV  150 (362)
Q Consensus        78 y~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T-------~~e~L~plF~G  150 (362)
                      .+..++++|++.|++++.++|++|.||+++++++||++||.. .. |+|+||||||+|++++       +|+.|.++|+|
T Consensus         4 ~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~-~~-~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G   81 (213)
T 3jsy_A            4 WKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDK-VK-LRMSRNTLIIRALKEAAEELNNPKLAELANYVER   81 (213)
T ss_dssp             HHHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTTT-EE-EEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCS
T ss_pred             HHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCC-CE-EEEEeHHHHHHHHhhchhhhcccchhHHHHhCcC
Confidence            355699999999999999999999999999999999999976 48 9999999999999999       89999999999


Q ss_pred             ceEEEEcCCc--h-HHHHHHH
Q psy9196         151 SEAIIVSPEA--K-VDVLLKT  168 (362)
Q Consensus       151 pTAIafS~ep--~-aK~llkf  168 (362)
                      +++|+|++++  . ++.+.++
T Consensus        82 ~~~l~Ft~~dp~~v~k~l~~~  102 (213)
T 3jsy_A           82 GAAILVTDMNPFKLYKLLEEN  102 (213)
T ss_dssp             SEEEEEESSCHHHHHHHHHHS
T ss_pred             CeEEEEeCCCHHHHHHHHHHc
Confidence            9999999764  3 3444444

>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.55  E-value=3.2e-15  Score=146.58  Aligned_cols=88  Identities=16%  Similarity=0.157  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcC-------CCCCCcCccccce
Q psy9196          80 NILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNT-------KYISIMPLFKVSE  152 (362)
Q Consensus        80 ~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T-------~~e~L~plF~GpT  152 (362)
                      ..++++|++.|++++.++|++|.||++.++++||++||..|+. |+|+||||||+|++++       +|+.|.++|+|++
T Consensus         9 ~~~v~el~e~l~~~~~v~v~~~~gl~v~ql~~lR~~lr~~g~~-~~v~KNtL~r~Al~~~~~~e~~~~l~~L~~~L~G~~   87 (339)
T 3j21_k            9 KKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGL-LRVSRNTLIELAIKKVAQELGKPELEKLINYIEGGA   87 (339)
T ss_dssp             TTHHHHHHHHHHHSSEEEEEECTTCCTTHHHHHHHHHHHTTEE-EECCHHHHSCHHHHHHHSSCCCSSSSSSSCCCCTTE
T ss_pred             HHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCeE-EEEEhHHHHHHHHhcChhhhccccHHHHHHHhcCCe
Confidence            3489999999999999999999999999999999999999999 9999999999999988       6899999999999


Q ss_pred             EEEEcCC-c--hHHHHHHH
Q psy9196         153 AIIVSPE-A--KVDVLLKT  168 (362)
Q Consensus       153 AIafS~e-p--~aK~llkf  168 (362)
                      +|+|+++ |  .+|.|.+|
T Consensus        88 ~l~Ft~~dp~~v~k~l~~~  106 (339)
T 3j21_k           88 GILVTTMNPFKLYKFLQQN  106 (339)
T ss_dssp             EEEEESSCHHHHHHHHHHS
T ss_pred             EEEEECCCHHHHHHHHHHc
Confidence            9999975 4  34444444

>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8

Probab=99.54  E-value=1.7e-14  Score=140.20  Aligned_cols=111  Identities=9%  Similarity=0.160  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhc-----CCCCCCcCccccce
Q psy9196          78 FQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTN-----TKYISIMPLFKVSE  152 (362)
Q Consensus        78 y~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~-----T~~e~L~plF~GpT  152 (362)
                      -+..++++|++.|++++.++|++|.||++.++++||++||+.+ . |+|+||||||+|+++     ++|+.|.++|+|++
T Consensus         7 ~K~~~v~el~e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~~~-~-~~V~KNTL~r~Al~~~~~~~~~le~L~~~L~G~~   84 (312)
T 3u5i_q            7 KKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRA-V-VLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKGNV   84 (312)
T ss_dssp             HHHHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHSSSC-E-EEECCHHHHHHHHHTTSSSSCGGGGTGGGCCSSE
T ss_pred             HHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHhcCc-e-EEEeehHHHHHHHhhCcccccChHHHHHhccCCE
Confidence            3566999999999999999999999999999999999999887 6 889999999999999     57899999999999


Q ss_pred             EEEEcCCc--h-HHHHHHHHhhCCCeEEEEEEEcCeecCHHHH
Q psy9196         153 AIIVSPEA--K-VDVLLKTLKKTPQLTLMATIVDNRLLSKTET  192 (362)
Q Consensus       153 AIafS~ep--~-aK~llkf~Kk~pkL~LkGGiVEGkvLs~~eI  192 (362)
                      +|+|++++  . +|.|.+|.  .+..-..|.+..-.+.=+.+-
T Consensus        85 gl~Ft~~dp~~v~k~l~~~k--~~~pAr~GaiAp~dV~Ip~G~  125 (312)
T 3u5i_q           85 GFVFTNEPLTEIKNVIVSNR--VAAPARAGAVAPEDIWVRAVN  125 (312)
T ss_dssp             EEEEESSCHHHHHHHHHTSS--CCC------------------
T ss_pred             EEEEECCCHHHHHHHHHhcc--CcccccCCCcCCceEEECCCC
Confidence            99999764  2 23333332  245566777777666555444

>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.50  E-value=1.6e-15  Score=147.60  Aligned_cols=108  Identities=11%  Similarity=0.153  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcC-----CCCCCcCccccce
Q psy9196          78 FQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNT-----KYISIMPLFKVSE  152 (362)
Q Consensus        78 y~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T-----~~e~L~plF~GpT  152 (362)
                      .+..++++|++.|++++.++|++|.||++.++++||++||.. +. |+|+||||||+||+++     +|+.|.++|+|++
T Consensus         9 ~K~~~V~eL~e~l~~~~~v~vvd~~gl~v~ql~~LR~~lR~~-~~-~~V~KNTL~r~Al~~~~~~~~~~e~L~~~L~G~~   86 (317)
T 2zkr_g            9 WKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGK-AV-VLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNV   86 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhcC-cE-EEEEeHHHHHHHHhhCcccccchhhhhhccCCCE
Confidence            355699999999999999999999999999999999999987 68 9999999999999999     8999999999999


Q ss_pred             EEEEcCC-c--hHHHHHHHHhhCCCeEEEEEEEcCeecCH
Q psy9196         153 AIIVSPE-A--KVDVLLKTLKKTPQLTLMATIVDNRLLSK  189 (362)
Q Consensus       153 AIafS~e-p--~aK~llkf~Kk~pkL~LkGGiVEGkvLs~  189 (362)
                      +|+|+++ |  .+|.+.+|..  +.....|.+....++=+
T Consensus        87 al~Ft~~Dp~~vaK~l~~f~~--~~pAr~GaiAp~dV~Ip  124 (317)
T 2zkr_g           87 GFVFTKEDLTEIRDMLLANKV--PAAARAGAIAPCEVTVP  124 (317)
T ss_dssp             ----------------------------------------
T ss_pred             EEEEECCCHHHHHHHHHHhCc--cchhccCCcCCceEEeC
Confidence            9999965 4  4566666643  33344555555544433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	362
d1zava1	177	Ribosomal protein L10 {Thermotoga maritima [TaxId:	100.0

>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein L10-like
family: Ribosomal protein L10-like
domain: Ribosomal protein L10
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.5e-40  Score=292.04  Aligned_cols=163  Identities=17%  Similarity=0.210  Sum_probs=154.4

Q ss_pred             hHHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHc---CCeeEEEechhHHHHHHhcCCCCCCcCccccceE
Q psy9196          77 IFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRV---GMTMLDRYGRATIEKALTNTKYISIMPLFKVSEA  153 (362)
Q Consensus        77 py~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~---gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTA  153 (362)
                      .-+..++++|+++|+++.+++|+||+||+|.|+++||++||++   |++ |+|+||||+|+|+++|+|+++.++|.|+++
T Consensus         5 ~~K~~~v~~l~~~l~~s~~vv~~~y~gLtv~e~~~LR~~lre~~~~g~~-~kV~KNtL~k~Al~~t~~~~l~~~l~g~~a   83 (177)
T d1zava1           5 QQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGAR-FRVVKNTLLNLALKNAEYEGYEEFLKGPTA   83 (177)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEE-EEEECHHHHHHHHHHTTCCSCGGGCSSSEE
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHHHhccCCeE-EEEechHHHHHHHhcCCcchhhHHHhhccc
Confidence            4567799999999999999999999999999999999999985   999 999999999999999999999999999999


Q ss_pred             EEEc-C-Cc--hHHHHHHHHhhCCC--eEEEEEEEcCeecCHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy9196         154 IIVS-P-EA--KVDVLLKTLKKTPQ--LTLMATIVDNRLLSKTETEMYAT-TNLATQQALLVQTISSVATSLTSQLNHHS  226 (362)
Q Consensus       154 IafS-~-ep--~aK~llkf~Kk~pk--L~LkGGiVEGkvLs~~eI~~LAk-PSlEeL~AqLvg~LqsPasqLvs~Lqa~~  226 (362)
                      ++|+ . ||  .+|.+.+|.|.++.  +.|+||++||++++.++|++||+ ||+|+|++||+|+|++|+++|+++|++++
T Consensus        84 ~~~~~~~d~~~~aK~l~~f~k~~k~~~~~i~gg~~eg~~l~~~~i~~la~LPs~eel~a~l~~~L~ap~~~l~~~L~~~~  163 (177)
T d1zava1          84 VLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSGIL  163 (177)
T ss_dssp             EEEESSSCTHHHHHHHHHHHHHTTCCGGGEEEEEETTEEEEHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeecCCchhhhhHHHHHhhhccccccceeEEEecCcccCHHHHHHHhcCCCHHHHHHHHHHHHHhHHHHHHHHHHhHH
Confidence            9996 3 45  78999999997654  89999999999999999999999 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q psy9196         227 TTLVSYLDQHSGTG  240 (362)
Q Consensus       227 ~~Lv~vLdq~~kqq  240 (362)
                      ++|+++|+++.+|+
T Consensus       164 ~~l~~~L~a~~~kk  177 (177)
T d1zava1         164 RNLVYVLNAIKEKK  177 (177)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999875