Psyllid ID: psy9276

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580---
Protein Sequence
MEEDPPIQHQEIIEEGLREEEVGLEPDLSKVKEEVIIKMEPEDDVDPEAESLNRRGMPRRTIKKNRYIFDDMFNAGATSPRVNKTPNKTPTKKATPNSKKKKTPTSLVKFSSSSKLQSTLTETPEKFNDSKLKGSKKSRVRCSSPDRNLGQRVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLFNDNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQMFFASVPNDHTNRTGKPEPEAMDANHIDKELEGMLGEYPVELLEQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALAGERGSLATLTKPVSQNTFNK
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEccccccccEEEEEEEEccccEEEEEEccccccEEEEccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHcccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHcccHHHHHHHHHHccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHcHcccccccccccEcccEEEEEEcccccccccEEEEEEcccccEEEEEEcccccccEEEcccHcccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHccccccHHcccccc
Coil and Loop (DISEMBL)
meedppiqhqEIIEEGlreeevglepdlskvkEEVIikmepeddvdpeaeslnrrgmprrtikkNRYIFDdmfnagatsprvnktpnktptkkatpnskkkktptslvkfssssklqstltetpekfndsklkgskksrvrcsspdrnlgqrVGMKLRNllklpkayrFVCYEFfysnidrplfndndfitcMKESFPQLKKYVFSRTEWSMVRRmvgkprrcsssffteERINLERRRNVIRYLqqgkcgdqttvkdipseipiqlVVGTKvtarvrspqdglftGVVDaydtsnntyritfdrqglgtqsipdyevlsndtpetlnRQSFLQMFFAsvpndhtnrtgkpepeamdanHIDKELEGMLGEYPVELLEQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSenmssqlyalspsdlqQETYIAAQEIVDTVNkkngnkivddqpvvSLITDLTALVLQIKTLSHSSRSAYEVEVLNKTMSDIYkklspnnqsvfENCIGVHMEQIKAALAGergslatltkpvsqntfnk
Flexible Loop (DISEMBL)
meedppiqhqeiieeglreeevglepdlskvkeeviikmepeddvdpeaeslnrrgmprrtikknryIFDDMfnagatsprvnktpnktptkkatpnskkkktptslvkfssssklqstltetpekfndsklkgskksrvrcsspdrnlgqrvgmKLRNLLKLPKAYRFVCYEFFYSNIDRPLFNDNDFITCMKESFPQLKKYVFSRTEWSMVRrmvgkprrcsssffteerinlerrrNVIRylqqgkcgdqttvkdipseipiQLVVGTKVTarvrspqdglftgvVDAYDTSNNTYRItfdrqglgtqsIPDYEVLSNDTPETLNRQSFLQMFFASVPNDHTNRTGKPEPEAMDANHIDKELEGMLGEYPVELLEQVVRFKKLlkfkktevyqirdmnseaerrqlygEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQPVVSLITDLTALVLQIKtlshssrsayEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALAGergslatltkpvsqntfnk
Low Complexity Region (SEG)
MEEDPPIQHQeiieeglreeevglePDLSKVKEEVIIKMEPEDDVDPEAESLNRRGMPRRTIKKNRYIFDDMFNAGATSPRVnktpnktptkkatpnskkkktptSLVKFSSSSKLQSTLTETPEKFNDSKLKGSKKSRVRCSSPDRNLGQRVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLFNDNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQMFFASVPNDHTNRTGKPEPEAMDANHIDKELEGMLGEYPVELLEQVVRfkkllkfkkTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALAGERGSLATLTKPVSQNTFNK
Disordered region (IsUnstruct)
*****************************************************************RYIFDDMF*******************************************************************************VGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLFNDNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVL**********QSFLQMFFA**************************LEGMLGEYPVELLEQVVRFKKLLKFKKTEVYQIRDMN****RRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSV*********Y******LQQETYIAAQEIVDTVNKKNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALA********************
Disordered Region (DISOPRED)
**********************************************************************************************************************************************************MKLRNLLKLPKAYRFVCYEFFYSNIDRPLFNDNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQG*C***TTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSF**********************************************QVVRFKKLLKFKKTEVY**************************YAGHILRLEKINKDVNTVLASLSV******************************************************SLITDLTALVLQIKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALAGERGSL**************
Disordered Region (DISEMBL)
********HQEIIEEGLREEEVGLEPDLSKVKEEVIIKMEPEDDVDPEAESLNRRGMPRRTIKKNRYIFDDMFNAGATSPRVN***************************************************************RNLGQRVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLFNDNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQMFFASVPNDHTNRTGKPEPEAMDANHIDKELEGMLGEYPVELLEQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALAGERGSLATLTKP********
Disordered Region (DISPRO)
***DPPIQHQEIIEEGLREEEVGLEPDL*******************************************************************************************************************SPDRNLGQRVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLFNDNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQMFFASVPNDHTNR********************MLGEYPVELLEQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALAGERGSLATLTKP*SQ*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEDPPIQHQEIIEEGLREEEVGLEPDLSKVKEEVIIKMEPEDDVDPEAESLNRRGMPRRTIKKNRYIFDDMFNAGATSPRVNKTPNKTPTKKATPNSKKKKTPTSLVKFSSSSKLQSTLTETPEKFNDSKLKGSKKSRVRCSSPDRNLGQRVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLFNDNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQMFFASVPNDHTNRTGKPEPEAMDANHIDKELEGMLGEYPVELLEQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALAGERGSLATLTKPVSQNTFNK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	583	2.2.26 [Sep-21-2011]
Q8C735	542	Protein lin-9 homolog OS=	yes	N/A	0.710	0.763	0.435	3e-97
Q4R8N2	542	Protein lin-9 homolog OS=	N/A	N/A	0.711	0.765	0.433	5e-97
Q5TKA1	542	Protein lin-9 homolog OS=	yes	N/A	0.710	0.763	0.437	6e-97
Q5RHQ8	543	Protein lin-9 homolog OS=	yes	N/A	0.711	0.764	0.417	3e-92
P30630	644	Protein lin-9 OS=Caenorha	yes	N/A	0.686	0.621	0.313	6e-58
Q6A333	1051	Protein ALWAYS EARLY 2 OS	yes	N/A	0.272	0.151	0.294	1e-11
Q6A331	971	Protein ALWAYS EARLY 1 OS	no	N/A	0.271	0.162	0.297	3e-11
Q6A332	1132	Protein ALWAYS EARLY 3 OS	no	N/A	0.440	0.227	0.242	2e-09

>sp|Q8C735|LIN9_MOUSE Protein lin-9 homolog OS=Mus musculus GN=Lin9 PE=2 SV=2

 Score =  356 bits (913), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 191/439 (43%), Positives = 273/439 (62%), Gaps = 25/439 (5%)

Query: 143 SSPDRNLGQRVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLF-NDNDFITCMKESFPQLK 201
           S+PD+   Q++G +LRNLLKLPKA+++  YE+FYSNID+PLF  DNDF  C+KESFP LK
Sbjct: 95  STPDKKASQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLK 154

Query: 202 KYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPS 261
               +R EW  +RR++GKPRRCSS+FF EER  L+++R  IR LQQ K  D +  KD+P 
Sbjct: 155 TRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVADVSQFKDLPD 214

Query: 262 EIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSN 321
           EIP+ LV+GTKVTAR+R   DGLFTG +DA DT N TYR+TFDR GLGT +IPDYEVLSN
Sbjct: 215 EIPLPLVIGTKVTARLRGIHDGLFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSN 274

Query: 322 DTPETLNRQSFLQ-----MFFASVPNDHTN-------RTGKP----EPEAMDANHIDKEL 365
           +  ET+   +F Q      FF + P  H           G P     P     +  D E 
Sbjct: 275 EPHETMPISAFGQKQRPSRFFMTPPRLHYTPPLQSPITDGDPLLGQSPWRSKVSGSDTE- 333

Query: 366 EGMLGEYPVELLEQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGH 425
              LG +PVE L QV +  K+L  KK  + ++R+MN+EAE+ + Y  P    FQ++YA  
Sbjct: 334 --TLGGFPVEFLIQVTKLSKILMIKKEHIKKLREMNTEAEKLKSYSMPIGIEFQRRYATI 391

Query: 426 ILRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVN 485
           +L LE++NKD+N VL  +     +L+   + +     A  P+D+++     AQEIV   N
Sbjct: 392 VLELEQLNKDLNKVLHKVQQYCYELA-PDQGLQP---ADQPTDMRRRCEEEAQEIVRQAN 447

Query: 486 KKNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSR-SAYEVEVLNKTMSDIYKKLSPNNQ 544
             +G   V+++ +  LI+ LTA++LQIK L+     +++E + L  +++DI   +  +N 
Sbjct: 448 SASGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLTDSLNDIKNTIDASNI 507

Query: 545 SVFENCIGVHMEQIKAALA 563
           S F+N + +H+  I++ L+
Sbjct: 508 SCFQNNVEIHVAHIQSGLS 526

Acts as a tumor suppressor. Inhibits DNA synthesis. Its ability to inhibit oncogenic transformation is mediated through its association with RB1. Plays a role in the expression of genes required for the G1/S transition.
Mus musculus (taxid: 10090)

>sp|Q4R8N2|LIN9_MACFA Protein lin-9 homolog OS=Macaca fascicularis GN=LIN9 PE=2 SV=1

 Score =  355 bits (911), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 190/438 (43%), Positives = 275/438 (62%), Gaps = 23/438 (5%)

Query: 143 SSPDRNLGQRVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLF-NDNDFITCMKESFPQLK 201
           S+PD+   Q++G +LRNLLKLPKA+++  YE+FYSNID+PLF  DNDF  C+KESFP LK
Sbjct: 95  STPDKKASQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLK 154

Query: 202 KYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPS 261
               +R EW  +RR++GKPRRCSS+FF EER  L+++R  IR LQQ K  D +  KD+P 
Sbjct: 155 TRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVADVSQFKDLPD 214

Query: 262 EIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSN 321
           EIP+ LV+GTKVTAR+R   DGLFTG +DA DT N TYR+TFDR GLGT +IPDYEVLSN
Sbjct: 215 EIPLPLVIGTKVTARLRGVHDGLFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSN 274

Query: 322 DTPETLNRQSFLQ-----MFFASVPNDHTNRTGKPEPEAMDANHI------DKELEG--- 367
           +  ET+   +F Q      FF + P  H   T   +   MD + +        ++ G   
Sbjct: 275 EPHETMPIAAFGQKQRPSRFFMTPPRLHY--TPPLQSPIMDNDPLLGQSPWRSKISGSDT 332

Query: 368 -MLGEYPVELLEQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHI 426
             LG +PVE L QV R  K+L  KK  + ++R+MN++AE+ + Y  P    FQ++YA  +
Sbjct: 333 ETLGGFPVEFLIQVTRLSKILMIKKEHIKKLREMNTDAEKLKSYSMPISIEFQRRYATIV 392

Query: 427 LRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNK 486
           L LE++NKD+N VL  +     +L+   + +     A  P+D+++     AQEIV   N 
Sbjct: 393 LELEQLNKDLNKVLHKVQQYCYELA-PDQGLQP---ADQPTDMRRRCEEEAQEIVRHANS 448

Query: 487 KNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSR-SAYEVEVLNKTMSDIYKKLSPNNQS 545
             G   V+++ +  LI+ LTA++LQIK L+     +++E + L  +++DI   +  +N S
Sbjct: 449 STGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLTDSLNDIKSTIDASNIS 508

Query: 546 VFENCIGVHMEQIKAALA 563
            F+N + +H+  I++ L+
Sbjct: 509 CFQNNVEIHVAHIQSGLS 526

Acts as a tumor suppressor. Inhibits DNA synthesis. Its ability to inhibit oncogenic transformation is mediated through its association with RB1. Plays a role in the expression of genes required for the G1/S transition.

Macaca fascicularis (taxid: 9541)

>sp|Q5TKA1|LIN9_HUMAN Protein lin-9 homolog OS=Homo sapiens GN=LIN9 PE=1 SV=1

 Score =  355 bits (910), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 192/439 (43%), Positives = 272/439 (61%), Gaps = 25/439 (5%)

Query: 143 SSPDRNLGQRVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLF-NDNDFITCMKESFPQLK 201
           S+PD+   Q++G +LRNLLKLPKA+++  YE+FYSNID+PLF  DNDF  C+KESFP LK
Sbjct: 95  STPDKKASQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLK 154

Query: 202 KYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPS 261
               +R EW  +RR++GKPRRCSS+FF EER  L+++R  IR LQQ K  D +  KD+P 
Sbjct: 155 TRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVADVSQFKDLPD 214

Query: 262 EIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSN 321
           EIP+ LV+GTKVTAR+R   DGLFTG +DA DT N TYR+TFDR GLGT +IPDYEVLSN
Sbjct: 215 EIPLPLVIGTKVTARLRGVHDGLFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSN 274

Query: 322 DTPETLNRQSFLQ-----MFFASVPNDH-TNRTGKP----------EPEAMDANHIDKEL 365
           +  ET+   +F Q      FF + P  H T     P           P     +  D E 
Sbjct: 275 EPHETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQSPIIDNDPLLGQSPWRSKISGSDTE- 333

Query: 366 EGMLGEYPVELLEQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGH 425
              LG +PVE L QV R  K+L  KK  + ++R+MN+EAE+ + Y  P    FQ++YA  
Sbjct: 334 --TLGGFPVEFLIQVTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATI 391

Query: 426 ILRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVN 485
           +L LE++NKD+N VL  +     +L+   + +     A  P+D+++     AQEIV   N
Sbjct: 392 VLELEQLNKDLNKVLHKVQQYCYELA-PDQGLQP---ADQPTDMRRRCEEEAQEIVRHAN 447

Query: 486 KKNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSR-SAYEVEVLNKTMSDIYKKLSPNNQ 544
              G   V+++ +  LI+ LTA++LQIK L+     +++E + L  +++DI   +  +N 
Sbjct: 448 SSTGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLTDSLNDIKSTIDASNI 507

Query: 545 SVFENCIGVHMEQIKAALA 563
           S F+N + +H+  I++ L+
Sbjct: 508 SCFQNNVEIHVAHIQSGLS 526

Acts as a tumor suppressor. Inhibits DNA synthesis. Its ability to inhibit oncogenic transformation is mediated through its association with RB1. Plays a role in the expression of genes required for the G1/S transition.

Homo sapiens (taxid: 9606)

>sp|Q5RHQ8|LIN9_DANRE Protein lin-9 homolog OS=Danio rerio GN=lin9 PE=2 SV=1

 Score =  340 bits (871), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 184/441 (41%), Positives = 275/441 (62%), Gaps = 26/441 (5%)

Query: 143 SSPDRNLGQRVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLF-NDNDFITCMKESFPQLK 201
           ++PD+ + Q++G++LRNLLKLPKA+++  YE+FYSNIDRPLF  DNDF  C+KESFP LK
Sbjct: 93  ATPDKRVSQKIGLRLRNLLKLPKAHKWCIYEWFYSNIDRPLFEGDNDFCLCLKESFPNLK 152

Query: 202 KYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPS 261
               +R EW  +RR++GKPRRCSS+FF EER+ L+++R  +R LQQ K  D +  KD+P 
Sbjct: 153 TRKLTRVEWGTIRRLMGKPRRCSSAFFAEERMALKQKRQKMRLLQQRKITDMSLCKDLPD 212

Query: 262 EIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSN 321
           EIP+ LV+GTKVTAR+R   DGLFTG +DA DTS  TYR+TFDR GLGT ++PDYEVLSN
Sbjct: 213 EIPLPLVIGTKVTARLRGVHDGLFTGQIDAVDTSAATYRVTFDRNGLGTHTVPDYEVLSN 272

Query: 322 DTPETLNRQSFLQ-------MFFASVPNDHTNRTGKPEPEAMDANHI------DKELEG- 367
           +  ET+   +F Q         F + P    + TG  +   MD + +        +L G 
Sbjct: 273 EPHETMPISAFAQKQRPPRFQNFLTPPRG--SYTGSTQSILMDNDPLFSQSPWRSKLTGT 330

Query: 368 ---MLGEYPVELLEQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAG 424
               LG +PV+ L QV R  K+L  KK  +  +++MN+EAE+ + Y  P     QK+YA 
Sbjct: 331 DGETLGGFPVKFLVQVTRLSKILMIKKEHIKHLKEMNTEAEKLKSYSMPIGLDLQKRYAT 390

Query: 425 HILRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTV 484
            +L LE++NKD+N VL  +     +L+   + M     A  PS+L++     +Q+++   
Sbjct: 391 TVLDLEQLNKDLNKVLHEVQQFCFELA-PDQGMQP---ADQPSELRRRCEEESQDVLRQN 446

Query: 485 NK-KNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSR-SAYEVEVLNKTMSDIYKKLSPN 542
           N   +G   V +  +  LI+ LTAL+LQI+ L+     +++E + L  +++DI   +  +
Sbjct: 447 NTLASGEPRVQNTELTQLISRLTALLLQIRCLAEGGDLNSFEFKSLTDSLNDIKSSIDDS 506

Query: 543 NQSVFENCIGVHMEQIKAALA 563
           N S F++ + +H+  I++ L+
Sbjct: 507 NLSCFQDNVEIHVAHIQSGLS 527

Danio rerio (taxid: 7955)

>sp|P30630|LIN9_CAEEL Protein lin-9 OS=Caenorhabditis elegans GN=lin-9 PE=1 SV=3

 Score =  226 bits (575), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 140/446 (31%), Positives = 247/446 (55%), Gaps = 46/446 (10%)

Query: 156 KLRNLLKLPKAYRFVCYEFFYSNIDRPLFND-NDFITCMKESFPQLKKYVFSRTEWSMVR 214
           KL NLL+  KA ++V  EFFYS ID  +F + N+F T ++ESFP LK +  +R EW  +R
Sbjct: 207 KLYNLLRYKKARQWVMCEFFYSAIDEQIFKEENEFATIIRESFPNLKNWNLTRIEWRSIR 266

Query: 215 RMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTV--KDIPSEIPIQLVVGTK 272
           +++GKPRRCS  FF EER+ LE +R  IR + +G   +  ++  KD+P+++P  +VVG +
Sbjct: 267 KLLGKPRRCSKVFFEEERMYLEEKRMKIRSVYEGSYLNDPSIDLKDLPAKLPRPMVVGNR 326

Query: 273 VTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSF 332
           V AR+R+P DG+++G++DA       +RI FD+  +    + D E+L +   + L+   F
Sbjct: 327 VFARIRNPYDGIYSGIIDAVIPKG--FRIIFDKPDIPPTLVSDTEILLDGKLDLLSIAYF 384

Query: 333 LQM-----------FFASVPNDH-------------TNRTGKPEPEAMDANHIDKELEG- 367
           ++            F A+V +                 R+G P    M  N  D+ L G 
Sbjct: 385 IEQANSKLPSGVRPFVAAVRDSSHPHLVRDVLVSRKIERSGGP---LMGPN--DERLNGK 439

Query: 368 ---MLGEYPVELLEQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAG 424
              M+G +P++ L  +V+  KL+  KK  + Q+ ++N++AE + +  + Y +AFQ+KYA 
Sbjct: 440 NAEMVGNFPLKFLVNLVKLTKLIDIKKGLIRQLNELNADAEIQNMTSDKYSKAFQEKYAK 499

Query: 425 HILRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTV 484
            I+ LE +N++++  +  +  +   +  +S ++S+    + P  ++Q     A   V+  
Sbjct: 500 TIIDLEHVNQNIDINMNGIQDH--HMYFSSNDISTS--NMKPEAVRQMCSQQAGRFVEHC 555

Query: 485 NKKNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNNQ 544
           N+      V++   ++LI  LTA++LQ++T+     SA +++ L   +S+I   + P N 
Sbjct: 556 NQGLN---VENVHALTLIQSLTAVLLQVRTMGTQKISAVDLQSLGDAISEIRTAIHPRNV 612

Query: 545 SVFENCIGVHMEQIKAALAGERGSLA 570
           + F++ + VHM+Q    +  E G+LA
Sbjct: 613 AFFQDYVEVHMKQFHTIML-ESGALA 637

Synthetic multivulva class B (synMuvB) protein. SynMuvB proteins are required to repress the induction of vulval development by Ras signaling and probably act by forming the multiprotein DRM complex that repress transcription. Required for the development of sheath cells in the hermaphrodite gonad and for the development of the male spicule, rays and gonad.

Caenorhabditis elegans (taxid: 6239)

>sp|Q6A333|ALY2_ARATH Protein ALWAYS EARLY 2 OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 28/187 (14%)

Query: 156 KLRNLLKLPKAYRFVCYEFFYSNIDRPLFNDNDFITCMKE----SFPQLKKYVFSRTEWS 211
           KL   L  P A R   +E+FYS ID P F+  +F+  +        P+L     +R EWS
Sbjct: 616 KLATSLSFPFARRRCIFEWFYSAIDHPWFSKMEFVDYLNHVGLGHIPRL-----TRLEWS 670

Query: 212 MVRRMVGKPRRCSSSFFTEERINLERRRNVIR-YLQQGKCGDQTTVKDIPSEIPIQLVVG 270
           +++  +G+PRR S  F  EER  L++ R  +R +  + + G +   + +P+++   L VG
Sbjct: 671 VIKSSLGRPRRFSERFLHEEREKLKQYRESVRKHYTELRTGAR---EGLPTDLARPLAVG 727

Query: 271 TKVTA---RVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSND----T 323
            +V A   + R   DG    V       +N   + FD   LG + + D + +  +     
Sbjct: 728 NRVIAIHPKTREIHDGKILTV------DHNKCNVLFD--DLGVELVMDIDCMPLNPLEYM 779

Query: 324 PETLNRQ 330
           PE L RQ
Sbjct: 780 PEGLRRQ 786

Arabidopsis thaliana (taxid: 3702)

>sp|Q6A331|ALY1_ARATH Protein ALWAYS EARLY 1 OS=Arabidopsis thaliana GN=ALY1 PE=2 SV=2

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 82/188 (43%), Gaps = 30/188 (15%)

Query: 156 KLRNLLKLPKAYRFVCYEFFYSNIDRPLFNDNDFITCMKE----SFPQLKKYVFSRTEWS 211
           KL N L  P   R+  YE+FYS ID P F   +F   +        P+L     +R EWS
Sbjct: 540 KLSNCLSYPLVRRWCIYEWFYSAIDYPWFAKMEFTDYLNHVGLGHAPRL-----TRVEWS 594

Query: 212 MVRRMVGKPRRCSSSFFTEERINLERRRNVIR--YLQQGKCGDQTTVKDIPSEIPIQLVV 269
           +++  +G+PRR S  F  +ER  L+  R  +R  Y +   C       D+       L V
Sbjct: 595 VIKSSLGRPRRLSQRFLQDERDKLQEYRESVRKHYTELRGCATGVLHTDLARP----LSV 650

Query: 270 GTKVTA---RVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSND---- 322
           G +V A   + R  +DG    V       +N   + FD   LG + + D + +  +    
Sbjct: 651 GNRVIAIHPKTREIRDGKILTV------DHNKCNVLFDE--LGVELVMDIDCMPLNPLEY 702

Query: 323 TPETLNRQ 330
            PE L RQ
Sbjct: 703 MPEGLRRQ 710

Arabidopsis thaliana (taxid: 3702)

>sp|Q6A332|ALY3_ARATH Protein ALWAYS EARLY 3 OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 137/350 (39%), Gaps = 93/350 (26%)

Query: 165 KAYRFVCYEFFYSNIDRPLFNDNDFITCMKE----SFPQLKKYVFSRTEWSMVRRMVGKP 220
           +A R+  +E+FYS ID P F   +F+  +        P+L     +R EW ++R  +GKP
Sbjct: 598 RARRWCIFEWFYSAIDYPWFARQEFVEYLDHVGLGHVPRL-----TRVEWGVIRSSLGKP 652

Query: 221 RRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARV--- 277
           RR S  F  EE+  L   R+ +R     K  D+     +   +P+ L     V+ RV   
Sbjct: 653 RRFSEQFLKEEKEKLYLYRDSVR-----KHYDELNT-GMREGLPMDLARPLNVSQRVICL 706

Query: 278 ----RSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLS----NDTPETLNR 329
               R   DG      +     +  YRI FD   LG + + D E +      + P +L R
Sbjct: 707 HPKSREIHDG------NVLTVDHCRYRIQFDNPELGVEFVKDTECMPLNPLENMPASLAR 760

Query: 330 ----------------------QSFLQMF---------FASVPNDHTNRTGKPE------ 352
                                 +S L+ +           S PN + + + K E      
Sbjct: 761 HYAFSNYHIQNPIEEKMHERAKESMLEGYPKLSCETGHLLSSPNYNISNSLKQEKVDISS 820

Query: 353 --PEAMDANHIDKELEGML-------------GEYPVELLEQVVRFKKLLKFKKTEVYQI 397
             P+A D   +D+ L   L              E  V+ L ++ R    L  K+  + ++
Sbjct: 821 SNPQAQDG--VDEALALQLFNSQPSSIGQIQAREADVQALSELTR---ALDKKELVLREL 875

Query: 398 RDMNSEAERRQLYGE----PYDRAFQKKYAGHILRLEKINKDVNTVLASL 443
           + MN E    Q  G         +F+K+YA  + +L +IN+ V+  L  L
Sbjct: 876 KCMNDEVVESQKDGHNNALKDSESFKKQYAAVLFQLSEINEQVSLALLGL 925

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	583
357612330	571	aly protein [Danaus plexippus]	0.845	0.863	0.446	1e-119
383853646	623	PREDICTED: protein lin-9 homolog [Megach	0.849	0.794	0.466	1e-117
66504577	623	PREDICTED: protein lin-9 homolog [Apis m	0.854	0.799	0.461	1e-115
189236498	597	PREDICTED: similar to Lin-9 homolog (mLi	0.842	0.822	0.435	1e-115
270005986	579	hypothetical protein TcasGA2_TC008121 [T	0.842	0.848	0.435	1e-114
156549690	631	PREDICTED: protein lin-9 homolog [Nasoni	0.885	0.817	0.450	1e-114
380026339	623	PREDICTED: LOW QUALITY PROTEIN: protein	0.845	0.791	0.455	1e-113
350427413	623	PREDICTED: protein lin-9 homolog [Bombus	0.837	0.783	0.458	1e-113
267844865	570	aly protein [Bombyx mori] gi|262089804|g	0.849	0.868	0.416	1e-112
340710503	622	PREDICTED: LOW QUALITY PROTEIN: protein	0.837	0.784	0.459	1e-112

>gi|357612330|gb|EHJ67923.1| aly protein [Danaus plexippus]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/546 (44%), Positives = 348/546 (63%), Gaps = 53/546 (9%)

Query: 35  VIIKMEPEDDVDPEAESLNRRGMPRRTIKKNRYIF-DDMFNAGATSPRVNKTPNKTPTKK 93
           V  K+ P+       + LN RGMP R  KKNR+IF DD  N   TSP   ++P +TP   
Sbjct: 51  VGTKLPPKPAPSEPVQKLNARGMPARIRKKNRFIFVDDFVN---TSP-PKQSPKRTPKIL 106

Query: 94  ATPNSKKKKTPTSLVKFSSSSKLQSTLTETPEKFNDSKLKGSKKSRVRCS--SPDRNLGQ 151
           A       KTP+      SS+K Q +  +TP        K ++KS  +C   SPDR  GQ
Sbjct: 107 A-------KTPSK----PSSAKKQKSPMKTP--------KHNEKSEEKCGNQSPDRKSGQ 147

Query: 152 RVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLFN-DNDFITCMKESFPQLKKYVFSRTEW 210
           R+GM+LRNLLKLPKA+++VC+E+FYSNID+ LF+ +NDF+ C+KESFPQL     ++ +W
Sbjct: 148 RIGMRLRNLLKLPKAHKWVCFEYFYSNIDKALFDGENDFMICLKESFPQLTNKKLTQVQW 207

Query: 211 SMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVG 270
           + +RRM+GKPRRCS +FF EER  LER+R +IRY+QQ K  D   VKD+PSEIP+QLVVG
Sbjct: 208 AKIRRMMGKPRRCSQAFFAEERKELERKRKLIRYIQQRKNAD-ICVKDLPSEIPMQLVVG 266

Query: 271 TKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQ 330
           TKVTAR+R PQDGLFTG +DA DTSNNTYRITF+R  LGT S+PDYEVLSN+ P+T++  
Sbjct: 267 TKVTARLRKPQDGLFTGCIDAVDTSNNTYRITFERPKLGTHSVPDYEVLSNEPPDTISLS 326

Query: 331 SFLQMF---------FA----SVPNDHTNRTGKPEPEAMDANHIDKELEGMLGEYPVELL 377
           S  Q F         F+    + PN +T++ G P    M    + K+L+  LG YP  LL
Sbjct: 327 SITQKFRPRYVMQEIFSLYQPTFPNKNTSQ-GDP---MMGCTDLTKQLDSHLGSYPFTLL 382

Query: 378 EQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVN 437
           E +V+  K+L+ KK+++ ++++ N EAE+R+ +G+     F++KYA  ++ LE++N D+ 
Sbjct: 383 ELIVKLSKILQAKKSKINKLKEYNCEAEKRKSFGQRMPEDFERKYASVVIDLERMNMDLQ 442

Query: 438 TVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQP 497
             +  + V  ++++       S    L+PS L+++    A  +V+    KN N  + D  
Sbjct: 443 EYINKIQVYCQQIAPG----PSLAAMLAPSHLREKCREEAAILVE----KNNNGSIKDNN 494

Query: 498 VVSLITDLTALVLQIKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQ 557
           ++ LITDLTAL+LQ+K+LS S ++AYE+ VL  TM  I  KL P  Q +F+  + +HM++
Sbjct: 495 IIELITDLTALMLQVKSLSDSDQNAYELSVLQGTMDQIKTKLEPQYQKIFQTHVELHMQR 554

Query: 558 IKAALA 563
           I+  L 
Sbjct: 555 IQMGLG 560

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853646|ref|XP_003702333.1| PREDICTED: protein lin-9 homolog [Megachile rotundata]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/547 (46%), Positives = 338/547 (61%), Gaps = 52/547 (9%)

Query: 52  LNRRGMPRRTIKKNRYIFDDMFNAGATSPRVNKTP----NKTPTKKAT-PNSKKKKTPTS 106
           LNRRGMP R  KKN+  +DD+        R+ K      NK   KK T P+  KK    S
Sbjct: 92  LNRRGMPARIRKKNKLFYDDIL-VNHPHHRIKKDSLHPDNKQSPKKVTRPSPAKKHNRIS 150

Query: 107 LVKFSSSSKLQSTLTETPEKFNDSKLKGSKKSRVRCSSPDRNLGQRVGMKLRNLLKLPKA 166
                +++ L  +LT T       K        ++ SSPDR +GQ++GM+LRNLLKLPKA
Sbjct: 151 NEPKKNNNILTQSLTPTMTPIKQEK---EPDKPMQPSSPDRKIGQKIGMRLRNLLKLPKA 207

Query: 167 YRFVCYEFFYSNIDRPLF-NDNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSS 225
           +++VCYE+FYSNID+ LF  DNDF+ C+KESFPQLK    +R EW  +RRM+GKPRRCS 
Sbjct: 208 HKWVCYEWFYSNIDKTLFEGDNDFMICLKESFPQLKTRKLTRVEWCKIRRMMGKPRRCSQ 267

Query: 226 SFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLF 285
           SFF EER  LER+R  IR LQQ K  D  + KD+P EIP+QLV+GTKVTAR+R PQDGLF
Sbjct: 268 SFFEEERRELERKRQKIRMLQQRKAADINSFKDLPPEIPLQLVIGTKVTARLRKPQDGLF 327

Query: 286 TGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQMFFASVPNDHT 345
           TG +DA DTSNNTYRITF+R GLGT S+PDYEVLSN+ PET++  SF Q F       H 
Sbjct: 328 TGSIDAVDTSNNTYRITFERAGLGTHSVPDYEVLSNEPPETISVASFAQKFRPR----HV 383

Query: 346 NRTGKPEPEAM---------------------DANHIDKELEGMLGEYPVELLEQVVRFK 384
                P P AM                       +HI     G +  YP++LLE +V+  
Sbjct: 384 QYVPSP-PYAMKLMSPRLNSDPLISNASVSLPKKSHIG----GTMNGYPLKLLEFMVKVS 438

Query: 385 KLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLS 444
           K+L  KK ++ ++R+MNSEAE+R+ +GE     F+++YAG ++ LEK+    NT L    
Sbjct: 439 KILSAKKIKIKKLREMNSEAEKRRSFGESLPPDFERRYAGIVVELEKM----NTALQDFL 494

Query: 445 VNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQP--VVSLI 502
            ++++L        S    L+PS L+++     QE  D VN+   N I D +P  +  L+
Sbjct: 495 NDVQELCQEMAPEPSVAAMLAPSHLREK---CRQEAADMVNR--NNVINDKEPGKMTQLV 549

Query: 503 TDLTALVLQIKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAAL 562
           TDLTAL+LQ+K+LS S R+AYE++VL  TM  I  KLSP NQ VF+NC+ +HM+ I+  L
Sbjct: 550 TDLTALMLQVKSLSDSDRNAYELKVLQGTMEQIRSKLSPQNQQVFQNCVEIHMQHIQLGL 609

Query: 563 AGERGSL 569
            G+RG+L
Sbjct: 610 -GQRGAL 615

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66504577|ref|XP_394339.2| PREDICTED: protein lin-9 homolog [Apis mellifera]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 251/544 (46%), Positives = 348/544 (63%), Gaps = 46/544 (8%)

Query: 52  LNRRGMPRRTIKKNRYIFDDMFNAGATSPRVNKTPNK-----TPTKKATPNSKKKKTPTS 106
           LNRRGMP R  KKN+  +DD+        R+ K P+      +P K + P+  KK+T   
Sbjct: 92  LNRRGMPARIRKKNKLFYDDIL-VNHPHHRIKKDPSHPDAKHSPKKVSRPSPAKKQT--- 147

Query: 107 LVKFSSSSKLQSTLTETPEKFNDSKLKGSKKSR--VRCSSPDRNLGQRVGMKLRNLLKLP 164
             K ++  +  + +   P     + +K  K+    ++ SSPDR +GQ++GM+LRNLLKLP
Sbjct: 148 --KITNEPRKNNNILSQPISSTMTPIKQEKEPDKPMQPSSPDRKIGQKIGMRLRNLLKLP 205

Query: 165 KAYRFVCYEFFYSNIDRPLF-NDNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRC 223
           KA+++VCYE+FYSNID+ LF  DNDF+ C+KESFPQLK    +R EW  +RRM+GKPRRC
Sbjct: 206 KAHKWVCYEWFYSNIDKTLFEGDNDFMICLKESFPQLKTRKLTRVEWCKIRRMMGKPRRC 265

Query: 224 SSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDG 283
           S SFF EER  LER+R  IR LQQ K  D  + KD+P EIP+QLV+GTKVTAR+R PQDG
Sbjct: 266 SQSFFEEERRELERKRQKIRMLQQRKAADINSFKDLPPEIPLQLVIGTKVTARLRKPQDG 325

Query: 284 LFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQMF----FAS 339
           LFTG +DA DTSNNTYRITF+R GLGT S+PDYEVLSN+ PET++  SF Q F       
Sbjct: 326 LFTGSIDAVDTSNNTYRITFERAGLGTHSVPDYEVLSNEPPETISVASFAQKFRPRHVQY 385

Query: 340 VPN-DHTNRTGKP----EPEAMDAN-------HIDKELEGMLGEYPVELLEQVVRFKKLL 387
           VP+  +  +   P    +P   +A+       HI     G +  YP++LLE +V+  K+L
Sbjct: 386 VPSPPYAMKLMSPRLNSDPLISNASVSLPKKPHIG----GTMNGYPLKLLEFMVKVNKIL 441

Query: 388 KFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNL 447
             KK ++ ++++MNSEAE+R+ +GEP    F+++YAG ++ LEK+    NT L     ++
Sbjct: 442 AAKKVKIKKLKEMNSEAEKRRSFGEPLPPDFERRYAGIVVELEKM----NTALQDFLNDI 497

Query: 448 KKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQP--VVSLITDL 505
           ++L        S    L+PS L+++     QE  D V +   N I D +P  +  L+TDL
Sbjct: 498 QELCQEMAPEPSVAAMLAPSHLREK---CRQEAADMVAR--NNIINDKEPGKMSQLVTDL 552

Query: 506 TALVLQIKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALAGE 565
           TAL+LQ+K+LS S R+AYE++VL  TM  I  KLSP NQ VF+NC+ +HM+ I+  L G+
Sbjct: 553 TALMLQVKSLSDSDRNAYELKVLQGTMEQIRAKLSPQNQQVFQNCVEIHMQHIQLGL-GQ 611

Query: 566 RGSL 569
           RG+L
Sbjct: 612 RGAL 615

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236498|ref|XP_975203.2| PREDICTED: similar to Lin-9 homolog (mLin-9) (Type I interferon receptor beta chain-associated protein) (TUDOR gene similar 1 protein) [Tribolium castaneum]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/528 (43%), Positives = 338/528 (64%), Gaps = 37/528 (7%)

Query: 52  LNRRGMPRRTIKKNRYIFDDMFNAGATSPRVNKTPNKTPTKKATPNSKKKKTPTSLVKFS 111
           LN RGMP R  KKN+  +DD          VN   ++ P+ K     K K+TP    K +
Sbjct: 76  LNARGMPARIRKKNKLFYDDDI--------VNTPHHRVPSAK-----KMKQTPVKKPKVN 122

Query: 112 SSSKLQSTLTETPEKFNDSKLKGSKK-SRVRCSSPDRNLGQRVGMKLRNLLKLPKAYRFV 170
           + +K   +  ETP++     +K  +  S     SPDR +GQ++G++LRN+LKLPKA+++V
Sbjct: 123 TPTK---SFKETPKRNTPRDVKSPRNISPPPLQSPDRKIGQKIGLRLRNVLKLPKAHKWV 179

Query: 171 CYEFFYSNIDRPLFN-DNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFFT 229
           CYE+FYS+IDR LF+ +NDF  C+KESFP+LK    +R +W+ +RRM+GKPRRCS +FF 
Sbjct: 180 CYEWFYSDIDRCLFSGENDFSICLKESFPELKTRELTRVQWTKIRRMMGKPRRCSQAFFH 239

Query: 230 EERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGVV 289
           EER+ LE++R  IR LQQ K  + ++ KD+P EIP+QLV+GTKVTAR+R PQDGLFTG +
Sbjct: 240 EERLELEKKRKKIRALQQRKATELSSFKDLPPEIPMQLVIGTKVTARLRKPQDGLFTGSI 299

Query: 290 DAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQMF--------FASVP 341
           DA DTSNNTYRITF+RQGLGT S+PDYEVLSN+ PETL+  SF   F        +A+  
Sbjct: 300 DAVDTSNNTYRITFERQGLGTHSVPDYEVLSNEPPETLSLSSFQNKFRPWNGITTYAAKI 359

Query: 342 NDHTNRTGKPEPEAMDANHIDKEL----EGMLGEYPVELLEQVVRFKKLLKFKKTEVYQI 397
           + +TN   K +P  +  + I+K +    EG +G YP +LLE++V   K+L  K+T++ ++
Sbjct: 360 SPYTNLKFKKDP-LLSGSMINKPIFPQEEGRIGGYPTKLLEKMVLITKILSVKRTKISEL 418

Query: 398 RDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSENM 457
           + MN++AE+   +       FQ+ YA  ++ LEK+N D+   L  +    ++++      
Sbjct: 419 KGMNAKAEKFNSFHSEIPEEFQRNYACILIDLEKLNHDLQLYLDDVQALCQEIAPE---- 474

Query: 458 SSQLYALSPSDLQQETYIAAQEIVDTVNK--KNGNKIVDDQPVVSLITDLTALVLQIKTL 515
            S    L+PS L+++    A EIV   N         V ++ ++ LITDLTAL+LQ+K+L
Sbjct: 475 PSVAAMLAPSHLREKCREEAAEIVQRQNSIISADKDPVKNKSILELITDLTALMLQVKSL 534

Query: 516 SHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALA 563
           + S ++AYE++VL  TM  I +KL+P+NQ VF+N + +HM+ I+  L 
Sbjct: 535 ADSDQNAYELQVLQGTMEQIKRKLTPSNQLVFQNSVEIHMKHIQVGLG 582

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005986|gb|EFA02434.1| hypothetical protein TcasGA2_TC008121 [Tribolium castaneum]

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/528 (43%), Positives = 338/528 (64%), Gaps = 37/528 (7%)

Query: 52  LNRRGMPRRTIKKNRYIFDDMFNAGATSPRVNKTPNKTPTKKATPNSKKKKTPTSLVKFS 111
           LN RGMP R  KKN+  +DD          VN   ++ P+ K     K K+TP    K +
Sbjct: 58  LNARGMPARIRKKNKLFYDDDI--------VNTPHHRVPSAK-----KMKQTPVKKPKVN 104

Query: 112 SSSKLQSTLTETPEKFNDSKLKGSKK-SRVRCSSPDRNLGQRVGMKLRNLLKLPKAYRFV 170
           + +K   +  ETP++     +K  +  S     SPDR +GQ++G++LRN+LKLPKA+++V
Sbjct: 105 TPTK---SFKETPKRNTPRDVKSPRNISPPPLQSPDRKIGQKIGLRLRNVLKLPKAHKWV 161

Query: 171 CYEFFYSNIDRPLFN-DNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFFT 229
           CYE+FYS+IDR LF+ +NDF  C+KESFP+LK    +R +W+ +RRM+GKPRRCS +FF 
Sbjct: 162 CYEWFYSDIDRCLFSGENDFSICLKESFPELKTRELTRVQWTKIRRMMGKPRRCSQAFFH 221

Query: 230 EERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGVV 289
           EER+ LE++R  IR LQQ K  + ++ KD+P EIP+QLV+GTKVTAR+R PQDGLFTG +
Sbjct: 222 EERLELEKKRKKIRALQQRKATELSSFKDLPPEIPMQLVIGTKVTARLRKPQDGLFTGSI 281

Query: 290 DAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQMF--------FASVP 341
           DA DTSNNTYRITF+RQGLGT S+PDYEVLSN+ PETL+  SF   F        +A+  
Sbjct: 282 DAVDTSNNTYRITFERQGLGTHSVPDYEVLSNEPPETLSLSSFQNKFRPWNGITTYAAKI 341

Query: 342 NDHTNRTGKPEPEAMDANHIDKEL----EGMLGEYPVELLEQVVRFKKLLKFKKTEVYQI 397
           + +TN   K +P  +  + I+K +    EG +G YP +LLE++V   K+L  K+T++ ++
Sbjct: 342 SPYTNLKFKKDP-LLSGSMINKPIFPQEEGRIGGYPTKLLEKMVLITKILSVKRTKISEL 400

Query: 398 RDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSENM 457
           + MN++AE+   +       FQ+ YA  ++ LEK+N D+   L  +    ++++      
Sbjct: 401 KGMNAKAEKFNSFHSEIPEEFQRNYACILIDLEKLNHDLQLYLDDVQALCQEIAPE---- 456

Query: 458 SSQLYALSPSDLQQETYIAAQEIVDTVNK--KNGNKIVDDQPVVSLITDLTALVLQIKTL 515
            S    L+PS L+++    A EIV   N         V ++ ++ LITDLTAL+LQ+K+L
Sbjct: 457 PSVAAMLAPSHLREKCREEAAEIVQRQNSIISADKDPVKNKSILELITDLTALMLQVKSL 516

Query: 516 SHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALA 563
           + S ++AYE++VL  TM  I +KL+P+NQ VF+N + +HM+ I+  L 
Sbjct: 517 ADSDQNAYELQVLQGTMEQIKRKLTPSNQLVFQNSVEIHMKHIQVGLG 564

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156549690|ref|XP_001605183.1| PREDICTED: protein lin-9 homolog [Nasonia vitripennis]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 246/546 (45%), Positives = 339/546 (62%), Gaps = 30/546 (5%)

Query: 52  LNRRGMPRRTIKKNRYIFDDMFNAGATSPRVNKTPNKTPTK---KATPNSKKKKTPTSLV 108
           LNRRGMP R  KKN+  +DD+        RV K P+ TP K   K  P     K    +V
Sbjct: 99  LNRRGMPARIRKKNKLFYDDIL-VNHPHHRVKKDPDSTPVKPSPKKIPRPSPAKKQAKVV 157

Query: 109 KFSSSSKLQSTLTETPEKFNDSKLKGSKKSRVRCSSPDRNLGQRVGMKLRNLLKLPKAYR 168
                  + +  T   +     K + ++K     SSPDR +GQ++GM+LRNLLKLPKA++
Sbjct: 158 HHEPKRSVSTPSTPVSKPIKIEKPQTAEKQPQAPSSPDRKIGQKIGMRLRNLLKLPKAHK 217

Query: 169 FVCYEFFYSNIDRPLFN-DNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSF 227
           +VCYE+FYSNID+ LF+ DNDF+ C+KESFPQLK    +R EW  +RRM+GKPRRCS +F
Sbjct: 218 WVCYEWFYSNIDKTLFDGDNDFMICLKESFPQLKSRKLTRVEWCKIRRMMGKPRRCSQAF 277

Query: 228 FTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTG 287
           F EER  LER+R  IR LQQ K  D    KD+P EIP+QLV+GTKVTAR+R PQDGLFTG
Sbjct: 278 FEEERRELERKRQKIRMLQQRKAADAQVFKDLPPEIPLQLVIGTKVTARLRKPQDGLFTG 337

Query: 288 VVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQMF----FASVPN- 342
            +DA DTSNNTYRITF+R GLGT S+PDYEVLSN+ PET++  SF   F       VP+ 
Sbjct: 338 SIDAVDTSNNTYRITFERAGLGTHSVPDYEVLSNEPPETISVASFTHKFRPRHVQYVPSP 397

Query: 343 DHTNRTGKP----EPEAMDANHIDK-ELEGMLGEYPVELLEQVVRFKKLLKFKKTEVYQI 397
            +  +   P    +P   +A    K  + G +  YPV  LE +V+  K+L  KK  + ++
Sbjct: 398 AYAMKLASPRLNNDPLISNATIAKKTHVGGTMNGYPVTFLENIVKVSKILSIKKINIKKL 457

Query: 398 RDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSENM 457
           ++MNSEAE+R+  GE +   F++KYAG ++ L+K+N D+  +L  +     +++      
Sbjct: 458 KEMNSEAEKRRSVGENFPPDFERKYAGIVVELDKMNTDLQELLNDVQGTCHEIAPE---- 513

Query: 458 SSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQP--VVSLITDLTALVLQIKTL 515
           +S    L+PS L+++     QE  D V K +   I D+ P  +  L+TDLTAL+LQ+K L
Sbjct: 514 ASITAMLTPSHLREK---CRQEAADMVAKNHA--INDNAPTNMNQLVTDLTALMLQVKYL 568

Query: 516 SHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALAGERGSLATLTKP 575
           S S R+AYE++VL  TM  I  KL+P+NQ VF+NC+ +HM+ I+  L    G +  LT  
Sbjct: 569 SDSDRNAYELKVLQGTMEQIRSKLTPSNQQVFQNCVEIHMQHIQLGL----GQIGALTPF 624

Query: 576 VSQNTF 581
           ++Q  +
Sbjct: 625 MAQKMY 630

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026339|ref|XP_003696909.1| PREDICTED: LOW QUALITY PROTEIN: protein lin-9 homolog [Apis florea]

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 250/549 (45%), Positives = 341/549 (62%), Gaps = 56/549 (10%)

Query: 52  LNRRGMPRRTIKKNRYIFDDMFNAGATSPRVNKTPNK-----TPTKKATPNSKKKKTPTS 106
           LNRRGMP R  KK    +DD+        R+ K P+      +P K + P+  KK+T   
Sbjct: 92  LNRRGMPARIRKKIXLFYDDIL-VNHPHHRIKKDPSHPDAKHSPKKVSRPSPAKKQT--- 147

Query: 107 LVKFSSSSKLQSTLTETPEKFNDSKLKGSKKSR--VRCSSPDRNLGQRVGMKLRNLLKLP 164
             K ++  +  + +   P     + +K  K+    ++ SSPDR +GQ++GM+LRNLLKLP
Sbjct: 148 --KITNEPRKNNNILSQPISSTMTPIKQEKEPDKPMQPSSPDRKIGQKIGMRLRNLLKLP 205

Query: 165 KAYRFVCYEFFYSNIDRPLF-NDNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRC 223
           KA+++VCYE+FYSNID+ LF  DNDF+ C+KESFPQLK    +R EW  +RRM+GKPRRC
Sbjct: 206 KAHKWVCYEWFYSNIDKTLFEGDNDFMICLKESFPQLKTRKLTRVEWCKIRRMMGKPRRC 265

Query: 224 SSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDG 283
           S SFF EER  LER+R  IR LQQ K  D  + KD+P EIP+QLV+GTKVTAR+R PQDG
Sbjct: 266 SQSFFEEERRELERKRQKIRMLQQRKAADINSFKDLPPEIPLQLVIGTKVTARLRKPQDG 325

Query: 284 LFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQMFFASVPND 343
           LFTG +DA DTSNNTYRITF+R GLGT S+PDYEVLSN+ PET++  SF Q F       
Sbjct: 326 LFTGSIDAVDTSNNTYRITFERAGLGTHSVPDYEVLSNEPPETISVASFAQKFRPR---- 381

Query: 344 HTNRTGKPEPEAM---------------------DANHIDKELEGMLGEYPVELLEQVVR 382
           H      P P AM                       +HI     G +  YP++LLE +V+
Sbjct: 382 HVQYVPSP-PYAMKLMSPRLNSDPLISNASVSLPKKSHIG----GTMNGYPLKLLEFMVK 436

Query: 383 FKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLAS 442
             K+L  KK ++ ++++MNSEAE+R+ +GEP    F+++YAG ++ LEK+    NT L  
Sbjct: 437 VNKILAAKKVKIKKLKEMNSEAEKRRSFGEPLPPDFERRYAGIVVELEKM----NTALQD 492

Query: 443 LSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQP--VVS 500
              ++++L        S    L+PS L+++     QE  D V +   N I D +P  +  
Sbjct: 493 FLNDIQELCQEMAPEPSVAAMLAPSHLREK---CRQEAADMVAR--NNIINDKEPGKMSQ 547

Query: 501 LITDLTALVLQIKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKA 560
           L+TDLTAL+LQ+K+LS S R+AYE++VL  TM  I  KLSP NQ VF+NC+ +HM+ I+ 
Sbjct: 548 LVTDLTALMLQVKSLSDSDRNAYELKVLQGTMEQIRAKLSPQNQQVFQNCVEIHMQHIQL 607

Query: 561 ALAGERGSL 569
            L G+RG+L
Sbjct: 608 GL-GQRGAL 615

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350427413|ref|XP_003494750.1| PREDICTED: protein lin-9 homolog [Bombus impatiens]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 254/554 (45%), Positives = 342/554 (61%), Gaps = 66/554 (11%)

Query: 52  LNRRGMPRRTIKKNRYIFDDMFNAGATSPRVNKTPNKTPTKKATPNSKKKKTPTSLVKFS 111
           LNRRGMP R  KKN+  +DD+        R+ K P+   TK    +S KK      V   
Sbjct: 92  LNRRGMPARIRKKNKLFYDDIL-VNHPHHRIKKDPSHPDTK----HSPKK------VSRP 140

Query: 112 SSSKLQSTLTETPEKFND-------SKLKGSKKSR-----VRCSSPDRNLGQRVGMKLRN 159
           S +K Q+ +T  P K N+       S +   K+ +     +  SSPDR +GQ++GM+LRN
Sbjct: 141 SPAKKQNRITNEPRKNNNILSQPVSSTMTPIKQEKEPDKPMPPSSPDRKIGQKIGMRLRN 200

Query: 160 LLKLPKAYRFVCYEFFYSNIDRPLF-NDNDFITCMKESFPQLKKYVFSRTEWSMVRRMVG 218
           LLKLPKA+++VCYE+FYSNID+ LF  DNDF+ C+KESFPQLK    +R EW  +RRM+G
Sbjct: 201 LLKLPKAHKWVCYEWFYSNIDKTLFEGDNDFMICLKESFPQLKTRKLTRVEWCKIRRMMG 260

Query: 219 KPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVR 278
           KPRRCS SFF EER  LER+R  IR LQQ K  D  + KD+P EIP+QLV+GTKVTAR+R
Sbjct: 261 KPRRCSQSFFEEERRELERKRQKIRMLQQRKAADINSFKDLPPEIPLQLVIGTKVTARLR 320

Query: 279 SPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQMFFA 338
            PQDGLFTG +DA DTSNNTYRITF+R GLGT S+PDYEVLSN+ PET++  SF Q F  
Sbjct: 321 KPQDGLFTGSIDAVDTSNNTYRITFERAGLGTHSVPDYEVLSNEPPETISVASFAQKFRP 380

Query: 339 SVPNDHTNRTGKPEPEAM---------------------DANHIDKELEGMLGEYPVELL 377
                H      P P AM                       +HI     G +  YP++LL
Sbjct: 381 R----HVQYVPSP-PYAMKLMSPRLNSDPLISNASVSLPKKSHIG----GTMNGYPLKLL 431

Query: 378 EQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVN 437
           E +V+  K+L  KK ++ ++++MNSEAE+R+ +GE     F++KYAG ++ LEK+    N
Sbjct: 432 EFMVKVNKILAAKKVKIKKLKEMNSEAEKRRSFGELLPPDFERKYAGIVVELEKM----N 487

Query: 438 TVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQP 497
           T L     ++++L        S    L+PS L+++     QE  D + + N   + D +P
Sbjct: 488 TALQDFLNDVQELCQEMAPEPSVAAMLAPSHLREK---CRQEAADMIARHNS--VNDREP 542

Query: 498 --VVSLITDLTALVLQIKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHM 555
             +  L+TDLTAL+LQ+K+LS S R+AYE++VL  TM  I  KLSP NQ VF+NC+ +HM
Sbjct: 543 GKMSQLVTDLTALMLQVKSLSDSDRNAYELKVLQGTMEQIRAKLSPQNQQVFQNCVEIHM 602

Query: 556 EQIKAALAGERGSL 569
           + I+  L G+RG+L
Sbjct: 603 QHIQLGL-GQRGAL 615

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|267844865|ref|NP_001161185.1| aly protein [Bombyx mori] gi|262089804|gb|ACY24884.1| Aly [Bombyx mori]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/543 (41%), Positives = 326/543 (60%), Gaps = 48/543 (8%)

Query: 35  VIIKMEPEDDVDPEAESLNRRGMPRRTIKKNRYIF-DDMFNAGATSPRVNKTP---NKTP 90
           V  K+ P+       + LN RGMP R  KKNR+IF DD  N         KTP   NKTP
Sbjct: 52  VGTKLPPKPAPSEPVQKLNARGMPARIRKKNRFIFVDDFVNTSPPRQSPKKTPKILNKTP 111

Query: 91  TKKATPNSKKKKTPTSLVKFSSSSKLQSTLTETPEKFNDSKLKGSKKSRVRCSSPDRNLG 150
            K   P++KK+K+P  + K +                     +  K   V     D   G
Sbjct: 112 NK--PPSAKKQKSPIKVQKATE--------------------RNDKVDSVGIQMQDNKSG 149

Query: 151 QRVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLFN-DNDFITCMKESFPQLKKYVFSRTE 209
            R+GM+LRNLLKLPKA+++VC+E+FYSNID+ LF+ +NDF+ C+KESFPQL     +RT+
Sbjct: 150 HRIGMRLRNLLKLPKAHKWVCFEYFYSNIDKVLFDGENDFMICLKESFPQLTNRKLTRTQ 209

Query: 210 WSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVV 269
           WS +RRM+GKPRRCS +FF EER  LER+R +IRY+QQ K  D   VKD+P+EIP+QLVV
Sbjct: 210 WSKIRRMMGKPRRCSQAFFDEERKELERKRRLIRYVQQQKSAD-VCVKDLPTEIPMQLVV 268

Query: 270 GTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNR 329
           GTKVTAR+R PQDGLFTG +DA DTSNNTYRITF+R  LGT S+PDYEVLSN+ P+T+  
Sbjct: 269 GTKVTARLRRPQDGLFTGCIDAVDTSNNTYRITFERPKLGTHSVPDYEVLSNEPPDTICL 328

Query: 330 QSFLQMF---------FASVPNDHTNRTGKPEPEAMDANHIDKELEGMLGEYPVELLEQV 380
            S  Q F          +       N  G P    +  + +  +   ++G YP   LE +
Sbjct: 329 TSITQRFRPRKVIQDLLSLYSPIQKNSQGDP---LIGCSDLANQANSVIGSYPFRFLELI 385

Query: 381 VRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVL 440
           V+ ++LL  KK+++ ++++ N  AE+R+ +G+     F++KYA  ++ LE++N D+   +
Sbjct: 386 VKLRRLLNAKKSKINKLKEYNCMAEKRKSFGQRMPEDFERKYAAVVIELERMNMDLQGYI 445

Query: 441 ASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQPVVS 500
             +  + ++++            L+PS L+ + +  A  +V+    KN N ++ D  V+ 
Sbjct: 446 NEIQHHCQQIAPG----PCLAAMLAPSQLRDKCHEEASVLVE----KNNNGVIQDPSVLD 497

Query: 501 LITDLTALVLQIKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKA 560
           L+TDLTAL+LQ+++LS S ++AYE+ VL  TM  I  KL P    +F+N + +HM +I+ 
Sbjct: 498 LVTDLTALMLQVRSLSDSDQNAYELSVLQGTMDQIKMKLKPQYHRLFQNNVEIHMHKIQM 557

Query: 561 ALA 563
            L 
Sbjct: 558 GLG 560

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710503|ref|XP_003393827.1| PREDICTED: LOW QUALITY PROTEIN: protein lin-9 homolog [Bombus terrestris]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/553 (45%), Positives = 340/553 (61%), Gaps = 65/553 (11%)

Query: 52  LNRRGMPRRTIKKNRYIFDDMFNAGATSPRVNKTPNKTPTKKATPNSKKKKTPTSLVKFS 111
           LNRRGMP R  KKN+  +DD+        R+ K P+   TK    +S KK      V   
Sbjct: 92  LNRRGMPARIRKKNKLFYDDIL-VNHPHHRIKKDPSHPDTK----HSPKK------VSRP 140

Query: 112 SSSKLQSTLTETPEKFN------DSKLKGSKKSR-----VRCSSPDRNLGQRVGMKLRNL 160
           S +K Q+ +T  P K N       S +   K+ +     +  SSPDR +GQ++GM+LRNL
Sbjct: 141 SPAKKQNRITNEPRKNNILSQPVSSTMTPIKQEKEPDKPMPPSSPDRKIGQKIGMRLRNL 200

Query: 161 LKLPKAYRFVCYEFFYSNIDRPLF-NDNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGK 219
           LKLPKA+++VCYE+FYSNID+ LF  DNDF+ C+KESFPQLK    +R EW  +RRM+GK
Sbjct: 201 LKLPKAHKWVCYEWFYSNIDKTLFEGDNDFMICLKESFPQLKTRKLTRVEWCKIRRMMGK 260

Query: 220 PRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRS 279
           PRRCS SFF EER  LER+R  IR LQQ K  D  + KD+P EIP+QLV+GTKVTAR+R 
Sbjct: 261 PRRCSQSFFEEERRELERKRQKIRMLQQRKAADINSFKDLPPEIPLQLVIGTKVTARLRK 320

Query: 280 PQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQMFFAS 339
           PQDGLFTG +DA DTSNNTYRITF+R GLGT S+PDYEVLSN+ PET++  SF Q F   
Sbjct: 321 PQDGLFTGSIDAVDTSNNTYRITFERAGLGTHSVPDYEVLSNEPPETISVASFAQKFRPR 380

Query: 340 VPNDHTNRTGKPEPEAM---------------------DANHIDKELEGMLGEYPVELLE 378
               H      P P AM                       +HI     G +  YP++LLE
Sbjct: 381 ----HVQYVPSP-PYAMKLMSPRLNSDPLISNASVSLPKKSHIG----GTMNGYPLKLLE 431

Query: 379 QVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNT 438
            +V+  K+L  KK +  ++++MNSEAE+R+ +GE     F++KYAG ++ LEK+    NT
Sbjct: 432 FMVKVNKILAAKKVKXKKLKEMNSEAEKRRSFGELLPPDFERKYAGIVVELEKM----NT 487

Query: 439 VLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQP- 497
            L     ++++L        S    L+PS L+++     QE  D + + N   + D +P 
Sbjct: 488 ALQDFLNDVQELCQEMAPEPSVAAMLAPSHLREK---CRQEAADMIARHNS--VNDREPG 542

Query: 498 -VVSLITDLTALVLQIKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHME 556
            +  L+TDLTAL+LQ+K+LS S R+AYE++VL  TM  I  KLSP NQ VF+NC+ +HM+
Sbjct: 543 KMSQLVTDLTALMLQVKSLSDSDRNAYELKVLQGTMEQIRAKLSPQNQQVFQNCVEIHMQ 602

Query: 557 QIKAALAGERGSL 569
            I+  L G+RG+L
Sbjct: 603 HIQLGL-GQRGAL 614

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	583
UNIPROTKB|F1MIQ3	541	LOC534587 "Uncharacterized pro	0.775	0.835	0.412	7.7e-87
UNIPROTKB|H0Y322	613	LIN9 "Protein lin-9 homolog" [	0.777	0.738	0.410	1.3e-86
UNIPROTKB|Q5TKA1	542	LIN9 "Protein lin-9 homolog" [	0.777	0.835	0.410	1.3e-86
UNIPROTKB|Q5ZMF8	450	LIN9 "Uncharacterized protein"	0.723	0.937	0.433	2e-86
MGI|MGI:1919818	542	Lin9 "lin-9 homolog (C. elegan	0.777	0.835	0.408	2.6e-86
RGD|1591104	552	Lin9 "lin-9 homolog (C. elegan	0.777	0.820	0.408	2.6e-86
UNIPROTKB|F1PWI7	490	LIN9 "Uncharacterized protein"	0.777	0.924	0.408	3.3e-86
ZFIN|ZDB-GENE-030131-1747	543	lin9 "lin-9 homolog (C. elegan	0.723	0.777	0.406	8.2e-85
UNIPROTKB|C9J5J4	489	LIN9 "Protein lin-9 homolog" [	0.723	0.862	0.420	8.2e-83
FB|FBgn0023509	986	mip130 "Myb-interacting protei	0.349	0.206	0.480	1.5e-61

UNIPROTKB|F1MIQ3 LOC534587 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
 Identities = 196/475 (41%), Positives = 285/475 (60%)

Query:   110 FSSSSKLQSTLTETPEKFNDSKLKGSKKSRVRCSSPDRNLGQRVGMKLRNLLKLPKAYRF 169
             FS     Q   T +P++ N       +K     S+PD+   Q++G +LRNLLKLPKA+++
Sbjct:    64 FSDEDDRQIN-TRSPKR-NQRVAMVPQKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKW 121

Query:   170 VCYEFFYSNIDRPLFN-DNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFF 228
               YE+FYSNID+PLF  DNDF  C+KESFP LK    +R EW  +RR++GKPRRCSS+FF
Sbjct:   122 CIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFF 181

Query:   229 TEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGV 288
              EER  L+++R  IR LQQ K  D +  KD+P EIP+ LV+GTKVTAR+R   DGLFTG 
Sbjct:   182 EEERSALKQKRQKIRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVTARLRGVHDGLFTGQ 241

Query:   289 VDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQM----FFASVPNDH 344
             +DA DT N TYR+TFDR GLGT +IPDYEVLSN+  ET+   +F Q     FF + P  H
Sbjct:   242 IDAVDTLNATYRVTFDRAGLGTHTIPDYEVLSNEPHETMPIAAFGQQRPSRFFMTPPRLH 301

Query:   345 -TNRTGKP----EPEAMDANHIDKELEGM----LGEYPVELLEQVVRXXXXXXXXXTEVY 395
              T     P    +P  +  +    ++ G     LG +PVE L QV R           + 
Sbjct:   302 YTPPLQSPIHDNDP-LLGQSPWRSKISGSDTETLGGFPVEFLIQVTRLSKILMIKKEHIK 360

Query:   396 QIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSE 455
             ++R+MN+EAE+ + Y  P    FQ++YA  +L LE++NKD+N VL  +     +L+   +
Sbjct:   361 KLREMNTEAEKLKSYSMPIGIEFQRRYATIVLELEQLNKDLNKVLHKVQQYCYELA-PDQ 419

Query:   456 NMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQPVVSLITDLTALVLQIKTL 515
              +     A  P+D+++     AQEIV   N   G   V+++ +  LI+ LTA++LQIK L
Sbjct:   420 GLQP---ADQPTDMRRRCEEEAQEIVRHANSSTGQPCVENENLTDLISRLTAILLQIKCL 476

Query:   516 SHSSR-SAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALAGERGSL 569
             +     +++E + L  +++DI   +  +N S F+N + +H+  I++ L+ + G+L
Sbjct:   477 AEGGDLNSFEFKSLTDSLNDIKSTIDASNISCFQNNVEIHVAHIQSGLS-QMGNL 530

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|H0Y322 LIN9 "Protein lin-9 homolog" [Homo sapiens (taxid:9606)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 195/475 (41%), Positives = 283/475 (59%)

Query:   110 FSSSSKLQSTLTETPEKFNDSKLKGSKKSRVRCSSPDRNLGQRVGMKLRNLLKLPKAYRF 169
             FS     Q   T +P++ N       +K     S+PD+   Q++G +LRNLLKLPKA+++
Sbjct:   135 FSDEDDRQIN-TRSPKR-NQRVAMVPQKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKW 192

Query:   170 VCYEFFYSNIDRPLFN-DNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFF 228
               YE+FYSNID+PLF  DNDF  C+KESFP LK    +R EW  +RR++GKPRRCSS+FF
Sbjct:   193 CIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFF 252

Query:   229 TEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGV 288
              EER  L+++R  IR LQQ K  D +  KD+P EIP+ LV+GTKVTAR+R   DGLFTG 
Sbjct:   253 EEERSALKQKRQKIRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVTARLRGVHDGLFTGQ 312

Query:   289 VDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQM-----FFASVPND 343
             +DA DT N TYR+TFDR GLGT +IPDYEVLSN+  ET+   +F Q      FF + P  
Sbjct:   313 IDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNEPHETMPIAAFGQKQRPSRFFMTPPRL 372

Query:   344 H-TNRTGKP---EPEAMDANHIDKELEGM----LGEYPVELLEQVVRXXXXXXXXXTEVY 395
             H T     P       +  +    ++ G     LG +PVE L QV R           + 
Sbjct:   373 HYTPPLQSPIIDNDPLLGQSPWRSKISGSDTETLGGFPVEFLIQVTRLSKILMIKKEHIK 432

Query:   396 QIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSE 455
             ++R+MN+EAE+ + Y  P    FQ++YA  +L LE++NKD+N VL  +     +L+   +
Sbjct:   433 KLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKDLNKVLHKVQQYCYELA-PDQ 491

Query:   456 NMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQPVVSLITDLTALVLQIKTL 515
              +     A  P+D+++     AQEIV   N   G   V+++ +  LI+ LTA++LQIK L
Sbjct:   492 GLQP---ADQPTDMRRRCEEEAQEIVRHANSSTGQPCVENENLTDLISRLTAILLQIKCL 548

Query:   516 SHSSR-SAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALAGERGSL 569
             +     +++E + L  +++DI   +  +N S F+N + +H+  I++ L+ + G+L
Sbjct:   549 AEGGDLNSFEFKSLTDSLNDIKSTIDASNISCFQNNVEIHVAHIQSGLS-QMGNL 602

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q5TKA1 LIN9 "Protein lin-9 homolog" [Homo sapiens (taxid:9606)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 195/475 (41%), Positives = 283/475 (59%)

Query:   110 FSSSSKLQSTLTETPEKFNDSKLKGSKKSRVRCSSPDRNLGQRVGMKLRNLLKLPKAYRF 169
             FS     Q   T +P++ N       +K     S+PD+   Q++G +LRNLLKLPKA+++
Sbjct:    64 FSDEDDRQIN-TRSPKR-NQRVAMVPQKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKW 121

Query:   170 VCYEFFYSNIDRPLFN-DNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFF 228
               YE+FYSNID+PLF  DNDF  C+KESFP LK    +R EW  +RR++GKPRRCSS+FF
Sbjct:   122 CIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFF 181

Query:   229 TEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGV 288
              EER  L+++R  IR LQQ K  D +  KD+P EIP+ LV+GTKVTAR+R   DGLFTG 
Sbjct:   182 EEERSALKQKRQKIRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVTARLRGVHDGLFTGQ 241

Query:   289 VDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQM-----FFASVPND 343
             +DA DT N TYR+TFDR GLGT +IPDYEVLSN+  ET+   +F Q      FF + P  
Sbjct:   242 IDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNEPHETMPIAAFGQKQRPSRFFMTPPRL 301

Query:   344 H-TNRTGKP---EPEAMDANHIDKELEGM----LGEYPVELLEQVVRXXXXXXXXXTEVY 395
             H T     P       +  +    ++ G     LG +PVE L QV R           + 
Sbjct:   302 HYTPPLQSPIIDNDPLLGQSPWRSKISGSDTETLGGFPVEFLIQVTRLSKILMIKKEHIK 361

Query:   396 QIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSE 455
             ++R+MN+EAE+ + Y  P    FQ++YA  +L LE++NKD+N VL  +     +L+   +
Sbjct:   362 KLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKDLNKVLHKVQQYCYELA-PDQ 420

Query:   456 NMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQPVVSLITDLTALVLQIKTL 515
              +     A  P+D+++     AQEIV   N   G   V+++ +  LI+ LTA++LQIK L
Sbjct:   421 GLQP---ADQPTDMRRRCEEEAQEIVRHANSSTGQPCVENENLTDLISRLTAILLQIKCL 477

Query:   516 SHSSR-SAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALAGERGSL 569
             +     +++E + L  +++DI   +  +N S F+N + +H+  I++ L+ + G+L
Sbjct:   478 AEGGDLNSFEFKSLTDSLNDIKSTIDASNISCFQNNVEIHVAHIQSGLS-QMGNL 531

GO:0006260 "DNA replication" evidence=IEA

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q5ZMF8 LIN9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 192/443 (43%), Positives = 274/443 (61%)

Query:   143 SSPDRNLGQRVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLFN-DNDFITCMKESFPQLK 201
             S+PD+   Q++G++LRNLLKLPKA+++  YE+FYSNID+PLF  DNDF  C+KESFP LK
Sbjct:     2 STPDKKASQKIGLRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLK 61

Query:   202 KYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPS 261
                 +R EW  +RR++GKPRRCSS+FF EER  L+++R  IR LQQ K  D +  KD+P 
Sbjct:    62 TRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVADISQFKDLPD 121

Query:   262 EIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSN 321
             EIP+ LV+GTKVTAR+R   DGLFTG ++A DT N TYR+TFDR GLGTQ+IPDYEVLSN
Sbjct:   122 EIPLPLVIGTKVTARLRGVHDGLFTGQIEAVDTLNATYRVTFDRAGLGTQTIPDYEVLSN 181

Query:   322 DTPETLNRQSFLQM-----FFASVPNDH-TNRTGKP----EP---EAMDANHIDKELEGM 368
             +  ET+   +F Q      FF + P  H T     P    +P   ++   N I       
Sbjct:   182 EPHETMPIAAFGQKQRPSRFFMTPPRLHYTPSLQSPITDSDPLLGQSSWKNKISGTDSET 241

Query:   369 LGEYPVELLEQVVRXXXXXXXXXTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHILR 428
             LG +PVE L QV R           + Q+R+MN+EAE+ + Y  P    FQ++YA  +L 
Sbjct:   242 LGGFPVEFLIQVTRLSKILMIKKEHIKQLREMNTEAEKLKSYSMPISIEFQRRYATIVLD 301

Query:   429 LEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNKKN 488
             LE++NKD+N VL  +     +L+   + +     A  P+DL++     AQEIV   N   
Sbjct:   302 LEQLNKDLNKVLHKVQQYCYELA-PDQGLQP---ADQPTDLRRRCEEEAQEIVRQANSST 357

Query:   489 -GNKIVDDQPVVSLITDLTALVLQIKTLSHSSR-SAYEVEVLNKTMSDIYKKLSPNNQSV 546
              G   V+ + +  LI+ LTA++LQIK L+     +++E + L  +++DI   +  +N S 
Sbjct:   358 TGQLCVESENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLTDSLNDIKNSIDSSNISC 417

Query:   547 FENCIGVHMEQIKAALAGERGSL 569
             F+N + +H+  I++ L+ + G+L
Sbjct:   418 FQNNVEIHVAHIQSGLS-QMGNL 439

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1919818 Lin9 "lin-9 homolog (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
 Identities = 194/475 (40%), Positives = 286/475 (60%)

Query:   110 FSSSSKLQSTLTETPEKFNDSKLKGSKKSRVRCSSPDRNLGQRVGMKLRNLLKLPKAYRF 169
             FS     Q   T++P++ N       +K     S+PD+   Q++G +LRNLLKLPKA+++
Sbjct:    64 FSDEDDRQIN-TKSPKR-NQRVAMIPQKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKW 121

Query:   170 VCYEFFYSNIDRPLFN-DNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFF 228
               YE+FYSNID+PLF  DNDF  C+KESFP LK    +R EW  +RR++GKPRRCSS+FF
Sbjct:   122 CIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFF 181

Query:   229 TEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGV 288
              EER  L+++R  IR LQQ K  D +  KD+P EIP+ LV+GTKVTAR+R   DGLFTG 
Sbjct:   182 EEERSALKQKRQKIRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVTARLRGIHDGLFTGQ 241

Query:   289 VDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQM-----FFASVPND 343
             +DA DT N TYR+TFDR GLGT +IPDYEVLSN+  ET+   +F Q      FF + P  
Sbjct:   242 IDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNEPHETMPISAFGQKQRPSRFFMTPPRL 301

Query:   344 H-TNRTGKPEPEA---MDANHIDKELEGM----LGEYPVELLEQVVRXXXXXXXXXTEVY 395
             H T     P  +    +  +    ++ G     LG +PVE L QV +           + 
Sbjct:   302 HYTPPLQSPITDGDPLLGQSPWRSKVSGSDTETLGGFPVEFLIQVTKLSKILMIKKEHIK 361

Query:   396 QIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSE 455
             ++R+MN+EAE+ + Y  P    FQ++YA  +L LE++NKD+N VL  +     +L+   +
Sbjct:   362 KLREMNTEAEKLKSYSMPIGIEFQRRYATIVLELEQLNKDLNKVLHKVQQYCYELA-PDQ 420

Query:   456 NMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQPVVSLITDLTALVLQIKTL 515
              +     A  P+D+++     AQEIV   N  +G   V+++ +  LI+ LTA++LQIK L
Sbjct:   421 GLQP---ADQPTDMRRRCEEEAQEIVRQANSASGQPCVENENLTDLISRLTAILLQIKCL 477

Query:   516 SHSSR-SAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALAGERGSL 569
             +     +++E + L  +++DI   +  +N S F+N + +H+  I++ L+ + G+L
Sbjct:   478 AEGGDLNSFEFKSLTDSLNDIKNTIDASNISCFQNNVEIHVAHIQSGLS-QMGNL 531

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

RGD|1591104 Lin9 "lin-9 homolog (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
 Identities = 194/475 (40%), Positives = 286/475 (60%)

Query:   110 FSSSSKLQSTLTETPEKFNDSKLKGSKKSRVRCSSPDRNLGQRVGMKLRNLLKLPKAYRF 169
             FS     Q   T++P++ N       +K     S+PD+   Q++G +LRNLLKLPKA+++
Sbjct:    74 FSDEDDRQIN-TKSPKR-NQRVAMIPQKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKW 131

Query:   170 VCYEFFYSNIDRPLFN-DNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFF 228
               YE+FYSNID+PLF  DNDF  C+KESFP LK    +R EW  +RR++GKPRRCSS+FF
Sbjct:   132 CIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFF 191

Query:   229 TEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGV 288
              EER  L+++R  IR LQQ K  D +  KD+P EIP+ LV+GTKVTAR+R   DGLFTG 
Sbjct:   192 EEERSALKQKRQKIRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVTARLRGIHDGLFTGQ 251

Query:   289 VDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQM-----FFASVPND 343
             +DA DT N TYR+TFDR GLGT +IPDYEVLSN+  ET+   +F Q      FF + P  
Sbjct:   252 IDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNEPHETMPIAAFGQKQRPSRFFMTPPRL 311

Query:   344 H-TNRTGKPEPEA---MDANHIDKELEGM----LGEYPVELLEQVVRXXXXXXXXXTEVY 395
             H T     P  +    +  +    ++ G     LG +PVE L QV +           + 
Sbjct:   312 HYTPPLQSPITDGDPLLGQSPWRSKISGSDTETLGGFPVEFLIQVTKLSKILMIKKEHIK 371

Query:   396 QIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSE 455
             ++R+MN+EAE+ + Y  P    FQ++YA  +L LE++NKD+N VL  +     +L+   +
Sbjct:   372 KLREMNTEAEKLKSYSMPIGIEFQRRYATIVLELEQLNKDLNKVLHKVQQYCYELA-PDQ 430

Query:   456 NMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQPVVSLITDLTALVLQIKTL 515
              +     A  P+D+++     AQEIV   N  +G   V+++ +  LI+ LTA++LQIK L
Sbjct:   431 GLQP---ADQPTDMRRRCEEEAQEIVRQANSASGQPCVENENLTDLISRLTAILLQIKCL 487

Query:   516 SHSSR-SAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALAGERGSL 569
             +     +++E + L  +++DI   +  +N S F+N + +H+  I++ L+ + G+L
Sbjct:   488 AEGGDLNSFEFKSLTDSLNDIKNTIDASNISCFQNNVEIHVAHIQSGLS-QMGNL 541

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1PWI7 LIN9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 194/475 (40%), Positives = 284/475 (59%)

Query:   110 FSSSSKLQSTLTETPEKFNDSKLKGSKKSRVRCSSPDRNLGQRVGMKLRNLLKLPKAYRF 169
             FS     Q   T +P++ N       +K     S+PD+   Q++G +LRNLLKLPKA+++
Sbjct:    12 FSDEDDRQIN-TRSPKR-NQRVAMVPQKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKW 69

Query:   170 VCYEFFYSNIDRPLFN-DNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFF 228
               YE+FYSNID+PLF  DNDF  C+KESFP LK    +R EW  +RR++GKPRRCSS+FF
Sbjct:    70 CIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFF 129

Query:   229 TEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGV 288
              EER  L+++R  IR LQQ K  D +  KD+P EIP+ LV+GTKVTAR+R   DGLFTG 
Sbjct:   130 EEERSALKQKRQKIRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVTARLRGVHDGLFTGQ 189

Query:   289 VDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQM-----FFASVPND 343
             +DA DT N TYR+TFDR GLGT +IPDYEVLSN+  ET+   +F Q      FF + P  
Sbjct:   190 IDAVDTFNATYRVTFDRAGLGTHTIPDYEVLSNEPHETMPIAAFGQKQRPSRFFMTPPRL 249

Query:   344 H-TNRTGKPEPE---AMDANHIDKELEGM----LGEYPVELLEQVVRXXXXXXXXXTEVY 395
             H T     P  +    +  +    ++ G     LG +PVE L QV +           + 
Sbjct:   250 HYTPPLQSPITDNDPLLGQSPWRSKISGSDTETLGGFPVEFLIQVTKLSKILMIKKEHIK 309

Query:   396 QIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSE 455
             ++R+MN+EAE+ + Y  P    FQ++YA  +L LE++NKD+N VL  +     +L+   +
Sbjct:   310 KLREMNTEAEKLKSYSMPIGIEFQRRYATIVLELEQLNKDLNKVLHKVQQYCYELA-PDQ 368

Query:   456 NMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQPVVSLITDLTALVLQIKTL 515
              +     A  P+D+++     AQEIV   N   G   V+++ +  LI+ LTA++LQIK L
Sbjct:   369 GLQP---ADQPTDMRRRCEEEAQEIVRHANSSTGQPCVENENLTDLISRLTAILLQIKCL 425

Query:   516 SHSSR-SAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALAGERGSL 569
             +     +++E + L  +++DI   +  +N S F+N + +H+  I++ L+ + G+L
Sbjct:   426 AEGGDLNSFEFKSLTDSLNDIKSTIDASNISCFQNNVEIHVAHIQSGLS-QMGNL 479

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-030131-1747 lin9 "lin-9 homolog (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 818 (293.0 bits), Expect = 8.2e-85, Sum P(2) = 8.2e-85
 Identities = 181/445 (40%), Positives = 273/445 (61%)

Query:   143 SSPDRNLGQRVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLFN-DNDFITCMKESFPQLK 201
             ++PD+ + Q++G++LRNLLKLPKA+++  YE+FYSNIDRPLF  DNDF  C+KESFP LK
Sbjct:    93 ATPDKRVSQKIGLRLRNLLKLPKAHKWCIYEWFYSNIDRPLFEGDNDFCLCLKESFPNLK 152

Query:   202 KYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPS 261
                 +R EW  +RR++GKPRRCSS+FF EER+ L+++R  +R LQQ K  D +  KD+P 
Sbjct:   153 TRKLTRVEWGTIRRLMGKPRRCSSAFFAEERMALKQKRQKMRLLQQRKITDMSLCKDLPD 212

Query:   262 EIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSN 321
             EIP+ LV+GTKVTAR+R   DGLFTG +DA DTS  TYR+TFDR GLGT ++PDYEVLSN
Sbjct:   213 EIPLPLVIGTKVTARLRGVHDGLFTGQIDAVDTSAATYRVTFDRNGLGTHTVPDYEVLSN 272

Query:   322 DTPETLNRQSFLQM-----FFASVPNDHTNRTGKPEPEAMDANHIDKE------LEGM-- 368
             +  ET+   +F Q      F   +     + TG  +   MD + +  +      L G   
Sbjct:   273 EPHETMPISAFAQKQRPPRFQNFLTPPRGSYTGSTQSILMDNDPLFSQSPWRSKLTGTDG 332

Query:   369 --LGEYPVELLEQVVRXXXXXXXXXTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHI 426
               LG +PV+ L QV R           +  +++MN+EAE+ + Y  P     QK+YA  +
Sbjct:   333 ETLGGFPVKFLVQVTRLSKILMIKKEHIKHLKEMNTEAEKLKSYSMPIGLDLQKRYATTV 392

Query:   427 LRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNK 486
             L LE++NKD+N VL  +     +L+   + M     A  PS+L++     +Q+++   N 
Sbjct:   393 LDLEQLNKDLNKVLHEVQQFCFELA-PDQGMQP---ADQPSELRRRCEEESQDVLRQNNT 448

Query:   487 -KNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSR-SAYEVEVLNKTMSDIYKKLSPNNQ 544
               +G   V +  +  LI+ LTAL+LQI+ L+     +++E + L  +++DI   +  +N 
Sbjct:   449 LASGEPRVQNTELTQLISRLTALLLQIRCLAEGGDLNSFEFKSLTDSLNDIKSSIDDSNL 508

Query:   545 SVFENCIGVHMEQIKAALAGERGSL 569
             S F++ + +H+  I++ L+ + G+L
Sbjct:   509 SCFQDNVEIHVAHIQSGLS-QLGNL 532

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|C9J5J4 LIN9 "Protein lin-9 homolog" [Homo sapiens (taxid:9606)]

 Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
 Identities = 186/442 (42%), Positives = 265/442 (59%)

Query:   118 STLTETPE-KFNDSKLKGSKKSRVRCSSPDRNLGQRVGMKLRNLLKLPKAYRFVCYEFFY 176
             S+L +TP  K  ++      K     S+PD+   Q++G +LRNLLKLPKA+++  YE+FY
Sbjct:    50 SSLQKTPVWKGRNTSSAVEMKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKWCIYEWFY 109

Query:   177 SNIDRPLFN-DNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINL 235
             SNID+PLF  DNDF  C+KESFP LK    +R EW  +RR++GKPRRCSS+FF EER  L
Sbjct:   110 SNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSAL 169

Query:   236 ERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTS 295
             +++R  IR LQQ K  D +  KD+P EIP+ LV+GTKVTAR+R   DGLFTG +DA DT 
Sbjct:   170 KQKRQKIRLLQQRKVADVSQFKDLPDEIPLPLVIGTKVTARLRGVHDGLFTGQIDAVDTL 229

Query:   296 NNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQM-----FFASVPNDH-TNRTG 349
             N TYR+TFDR GLGT +IPDYEVLSN+  ET+   +F Q      FF + P  H T    
Sbjct:   230 NATYRVTFDRTGLGTHTIPDYEVLSNEPHETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQ 289

Query:   350 KP---EPEAMDANHIDKELEGM----LGEYPVELLEQVVRXXXXXXXXXTEVYQIRDMNS 402
              P       +  +    ++ G     LG +PVE L QV R           + ++R+MN+
Sbjct:   290 SPIIDNDPLLGQSPWRSKISGSDTETLGGFPVEFLIQVTRLSKILMIKKEHIKKLREMNT 349

Query:   403 EAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLY 462
             EAE+ + Y  P    FQ++YA  +L LE++NKD+N VL  +     +L+   + +     
Sbjct:   350 EAEKLKSYSMPISIEFQRRYATIVLELEQLNKDLNKVLHKVQQYCYELA-PDQGLQP--- 405

Query:   463 ALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSR-S 521
             A  P+D+++     AQEIV   N   G   V+++ +  LI+ LTA++LQIK L+     +
Sbjct:   406 ADQPTDMRRRCEEEAQEIVRHANSSTGQPCVENENLTDLISRLTAILLQIKCLAEGGDLN 465

Query:   522 AYEVEVLNKTMSDIYKKLSPNN 543
             ++E + L  +++DI   +  +N
Sbjct:   466 SFEFKSLTDSLNDIKSTIDASN 487

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

FB|FBgn0023509 mip130 "Myb-interacting protein 130" [Drosophila melanogaster (taxid:7227)]

 Score = 492 (178.3 bits), Expect = 1.5e-61, Sum P(3) = 1.5e-61
 Identities = 101/210 (48%), Positives = 143/210 (68%)

Query:   146 DRNLGQRVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLFNDND-FITCMKESFPQLKKYV 204
             ++ LGQ +G++LRNLLKLPKA+++   E+FYS +D+PLF   D F+  + E  P+L    
Sbjct:   282 NKRLGQSIGLRLRNLLKLPKAHKWAIAEWFYSYVDKPLFECRDEFMNHVNELAPRLGTRS 341

Query:   205 FSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGD----QTTVKDIP 260
               R EW  +RR +G+PRRCS+ FF+EER  L+R+R VIR LQ  K G+     + + D+P
Sbjct:   342 LIRHEWVNIRRRMGRPRRCSAKFFSEERKELDRKRQVIRTLQSRKPGEFKDSVSMLSDMP 401

Query:   261 SEIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLS 320
              +IP+ L +GTKVTAR+RSPQDG+F G V AYD+ N  YR+TF+R GLGT +IPDYE++S
Sbjct:   402 EKIPMTLPLGTKVTARLRSPQDGIFAGTVAAYDSLNAMYRVTFERIGLGTHAIPDYEIVS 461

Query:   321 NDTPETLNRQSFLQMFFASVPNDH-TNRTG 349
              +  E L   SF + F  ++ + + TN  G
Sbjct:   462 ENFHEMLPLHSFTKDFRPNLMSIYQTNNLG 491

GO:0005634 "nucleus" evidence=ISS;NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0031523 "Myb complex" evidence=IDA

GO:0007307 "eggshell chorion gene amplification" evidence=IC

GO:0003677 "DNA binding" evidence=IDA

GO:0000785 "chromatin" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0005700 "polytene chromosome" evidence=IDA

GO:0051297 "centrosome organization" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RHQ8	LIN9_DANRE	No assigned EC number	0.4172	0.7118	0.7642	yes	N/A
Q5TKA1	LIN9_HUMAN	No assigned EC number	0.4373	0.7101	0.7638	yes	N/A
Q8C735	LIN9_MOUSE	No assigned EC number	0.4350	0.7101	0.7638	yes	N/A
P30630	LIN9_CAEEL	No assigned EC number	0.3139	0.6861	0.6211	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	583
pfam06584	109	pfam06584, DIRP, DIRP	1e-35

>gnl|CDD|148285 pfam06584, DIRP, DIRP

 Score =  129 bits (325), Expect = 1e-35
 Identities = 51/109 (46%), Positives = 69/109 (63%), Gaps = 4/109 (3%)

Query: 175 FYSNIDRPLFNDNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFFTEERIN 234
           FYS ID+P F DNDF+  ++E FP L     +R EW ++RR +GKPRR S++F  EER  
Sbjct: 1   FYSAIDKPWFEDNDFVRYLREHFPLLHTRRLTRAEWRLIRRSMGKPRRFSAAFLKEEREK 60

Query: 235 LERRRNVIRYLQQGKCGDQTT----VKDIPSEIPIQLVVGTKVTARVRS 279
           LER+R  IR LQQ K   +      ++D+P ++P+ L VG KVTAR   
Sbjct: 61  LERKREKIRQLQQLKLHYKELNVGLLEDLPKDVPLPLAVGQKVTARHPR 109

DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related pathway, which is encoded by multiple eukaryotic genomes and is present in proteins including lin-9 of Caenorhabditis elegans, aly of fruit fly and mustard weed. Studies of lin-9 and aly of fruit fly proteins containing DIRP suggest that this domain might be involved in development. Aly, lin-9, act in parallel to, or downstream of, activation of MAPK by the RTK-Ras signalling pathway. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	583
PF06584	109	DIRP: DIRP; InterPro: IPR010561 DIRP (Domain in Rb	100.0
KOG1019|consensus	837		100.0
KOG1019|consensus	837		99.78
PF09465	55	LBR_tudor: Lamin-B receptor of TUDOR domain; Inter	92.09
PF15057	124	DUF4537: Domain of unknown function (DUF4537)	91.17
smart00333	57	TUDOR Tudor domain. Domain of unknown function pre	90.54
smart00743	61	Agenet Tudor-like domain present in plant sequence	87.46
PF15057	124	DUF4537: Domain of unknown function (DUF4537)	86.98
PF07039	130	DUF1325: SGF29 tudor-like domain; InterPro: IPR010	85.92

>PF06584 DIRP: DIRP; InterPro: IPR010561 DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related pathway, which is encoded by multiple eukaryotic genomes and is present in proteins including lin-9 of Caenorhabditis elegans, aly of Drosophila melanogaster and mustard weed

Probab=100.00  E-value=6.4e-44  Score=318.39  Aligned_cols=105  Identities=55%  Similarity=0.935  Sum_probs=101.5

Q ss_pred             ccccCCccccccchHHHHHHHhCCCCcccccchhHHHHHHhhhCCCCCCChhhHHHHHHHHHHHHHHHHHHhhccCCC--
Q psy9276         175 FYSNIDRPLFNDNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGD--  252 (583)
Q Consensus       175 FYS~IDkp~F~~nEF~~~L~e~fP~l~trkLtR~EW~~IRr~mGKPRRfS~aFl~eER~kLe~~R~~IR~lqq~~~~d--  252 (583)
                      |||+||+|||..|||++||+++||+++|++|||+||+.|||+||||||||++||+|||++||+||++||++|++++++  
T Consensus         1 FYS~iDk~~f~~neF~~~L~e~~p~l~t~~ltR~eW~~IRr~mGKPRRfS~aF~~eER~~Le~~R~~iR~lQ~~~~~~~~   80 (109)
T PF06584_consen    1 FYSFIDKPLFEDNEFQECLRESFPLLKTRKLTRVEWQKIRRSMGKPRRFSPAFLEEEREELERKRQKIRQLQQRKFHDTE   80 (109)
T ss_pred             CCccccHHHHhhhHHHHHHHHhCCcccCCccCHHHHHHHHHHcCCCCcCcHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999876  


Q ss_pred             --CCccCCCCCCCCccccCCCEEEEEecC
Q psy9276         253 --QTTVKDIPSEIPIQLVVGTKVTARVRS  279 (583)
Q Consensus       253 --~~~~~~LP~~IP~PL~VG~kV~Arl~~  279 (583)
                        ...+++||++||+||+|||||||+||+
T Consensus        81 ~~~~~~~~lP~~iP~pL~vG~kV~arl~~  109 (109)
T PF06584_consen   81 LNSDLLEDLPDEIPLPLSVGTKVTARLPK  109 (109)
T ss_pred             cchhhhhcCchhcCCcCCCCCEEEEecCC
Confidence              556899999999999999999999984

Studies of lin-9 and aly of fruit fly proteins containing DIRP suggest that this domain might be involved in development. Aly, lin-9, act in parallel to, or downstream of, activation of MAPK by the RTK-Ras signalling pathway.

>KOG1019|consensus

Probab=100.00  E-value=8.6e-40  Score=363.01  Aligned_cols=409  Identities=19%  Similarity=0.152  Sum_probs=320.2

Q ss_pred             chhhhHHHHHHHHhhcCccccccceeecccccCCccccc-cchHHHHHHHhCCCCcccccchhHHHHHHhhhCCCCCCCh
Q psy9276         147 RNLGQRVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLFN-DNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSS  225 (583)
Q Consensus       147 ~~~~q~~g~rL~n~Lk~pka~RW~~~EwFYS~IDkp~F~-~nEF~~~L~e~fP~l~trkLtR~EW~~IRr~mGKPRRfS~  225 (583)
                      +...+..|.+++|+++++.+|+|+|+|||||..|++.|. ..+|++..++.+|.+ ++-+.|+.|+.+|+- ||+||||.
T Consensus       145 ~~~D~~eg~~l~n~~~s~~~~~~~~~q~~~~~~~k~~~~~~~~~~~~~aed~~~~-s~~n~r~~~ql~r~~-~ksRr~~~  222 (837)
T KOG1019|consen  145 KRSDFDEGLRLTNEAKSLSGHLWFFKQFRTSQADKPTLKQFLVYKNQTAEDAPTL-SRPNIRALWQLDRRD-GKSRRGSA  222 (837)
T ss_pred             ccccccccccchhhhccccchHHHHHHHHhhhhccccchhhhHHHhhhhhhhhhc-cchhhhhhhhhhccc-ccchhccc
Confidence            667789999999999999999999999999999999999 999999999999998 999999999999999 99999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcc-CC---CCCccCCCCCCCCccccCCCEEEEEecCCCCcc-eeeEEEEEeCCCCeeE
Q psy9276         226 SFFTEERINLERRRNVIRYLQQGK-CG---DQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGL-FTGVVDAYDTSNNTYR  300 (583)
Q Consensus       226 aFl~eER~kLe~~R~~IR~lqq~~-~~---d~~~~~~LP~~IP~PL~VG~kV~Arl~~~~~gL-~~G~Vlavd~~~~~Yr  300 (583)
                      -||.+|+.++..+|..++..|++. +.   +.+.++.+|.+||.||.-+++|+++|....++. -.|+|+-++. ..+|.
T Consensus       223 ~~f~~e~~E~~~~~~~~~~~~sr~~~~~~~nss~~~~~~~~i~~~l~~~~~~Ss~L~~~er~~~~~~kv~~~e~-ae~sy  301 (837)
T KOG1019|consen  223 PFFREELSEQIPKRERIKTSQSREKFSKLKNSSMLRIGPRSIPKPLGKPDRVSSLLMDMERMGLEEAKVVKDEL-AEGSY  301 (837)
T ss_pred             hhhHhHHhhhhHHHHhhhhhhhhcccCCCCchHHhhhhhhhcccccccCccchhhhhchhhcccccceeEeech-hhhhh
Confidence            999999999999999888766653 32   444579999999999999999999998877775 4555555555 56666


Q ss_pred             EEecCCCCceeeecCcccccCCCcccchhhhhhhhhc----------cC-----------CCCC-------------CCC
Q psy9276         301 ITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQMFF----------AS-----------VPND-------------HTN  346 (583)
Q Consensus       301 V~Fdr~~lgv~~VpD~evms~~~~e~l~lssi~~~~~----------~s-----------p~~~-------------sp~  346 (583)
                      |.|   +||....||+++.|..+...+...+.....-          ++           |..+             +..
T Consensus       302 ~~d---~~~~~~~~ae~~~s~~p~~~l~S~~~t~~~~~~s~~i~d~~ss~~~iv~~~~~~~~~nv~~~ke~L~~~l~a~~  378 (837)
T KOG1019|consen  302 LDD---GLDALKLPAEESVSMLPGNRLESESSTHYKEERSGIIMDVNSSGFEIVETSPHIPKNNVSDTKELLDGKLRALS  378 (837)
T ss_pred             hhh---hhhhhccchhhcccccccccchhhcccccccccccceeccCcCCceeeccCcCCccccchhhhhhhhhhhhhhh
Confidence            777   9999999999999999988887665544331          00           0000             000


Q ss_pred             ----CCC---------------------CCCCCcccccchhhhhhhccC---CccHHHHH--H-------------HHHH
Q psy9276         347 ----RTG---------------------KPEPEAMDANHIDKELEGMLG---EYPVELLE--Q-------------VVRF  383 (583)
Q Consensus       347 ----~~~---------------------dPl~g~~~~~~~~~~~~~~iG---~~p~~lL~--~-------------lv~L  383 (583)
                          ...                     +++++.|..  ..+.+++..+   ++....++  +             +.++
T Consensus       379 ~~k~k~~k~~s~d~~~v~~~il~~ls~~~~~~v~D~e--t~~ei~q~~S~~~~~~~~~~e~~s~v~~~r~~~~~a~~q~~  456 (837)
T KOG1019|consen  379 KRKIKPSKPLSTDGVRVSVAILMDLSRKRKLLVLDVE--TPKEISQSKSRNRGESTERLEKKSLVKGRRYSAVPANLQRL  456 (837)
T ss_pred             hhcccccccccCCCccchhHHhhhhcccCcccccccc--chhhhhcccccccccchhhhhhhhhhhhhhhhhhhHHHHHh
Confidence                000                     111111110  0011111111   23333444  3             4555


Q ss_pred             HHHHHHHHHHHHHHHhhcHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhccccccccccccc
Q psy9276         384 KKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYA  463 (583)
Q Consensus       384 sKlL~~Ke~lV~~L~~MN~EAE~~~s~g~~~~e~FQrrYA~vvi~Le~vN~~L~~~L~~Lq~~~~~la~~~~~~~~~~~~  463 (583)
                      .+.+..+..++.++...+..+......-..+...||++||-+++++++.|..++..|.+.+.+..+++++    ...+.+
T Consensus       457 t~~i~~~~~l~~d~~~~~~d~~~~~~q~s~~~~~~~~Qk~~n~rd~elk~a~~e~~~~~e~~h~~~~s~n----~~Sq~~  532 (837)
T KOG1019|consen  457 TKKIGEESRLTRDKKELGADADIQPRQVSKSGPAFQEQKAPNIRDIELKNALQEKALSGEQDHHMYFSRN----DLSQSE  532 (837)
T ss_pred             hhhccchhhhhhhhhhcccccccccchhcccchhhhhhhcchhHHHHHHhHHHHHHhhcccchhhhcccc----chhHHH
Confidence            5555555555555555554444433333346788999999999999999999999999999999999999    888899


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHhhcCCcccCcchHHHHHHHHHHHHHHHhhcCcCCCchhhHHHHHHHHHHHH-hcCCCC
Q psy9276         464 LSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSRSAYEVEVLNKTMSDIY-KKLSPN  542 (583)
Q Consensus       464 ~~ps~lre~Cr~~A~e~~~~v~~~n~~~v~~~~~~~~LI~~LttLLlq~~~Lg~~~~na~e~~vL~d~l~eIk-~~l~p~  542 (583)
                      +-|.+.|+.|..+|   ..+|+++|.+...+...+.-++...|..|.+++--|....++.+..+|.+||.+++ ..+.++
T Consensus       533 l~~~~kre~c~~~~---~~~vd~i~~~~~~~~~~l~~~k~~~Td~L~~v~lg~~p~~s~V~~~vl~~~lqeprs~~~~~~  609 (837)
T KOG1019|consen  533 LLPKAKREECSSQA---GRTVDHINEGFYSANPHLGFLKMEFTDYLNHVRLGGTPRLSAVEWSVLKSSLQEPRSTRILQE  609 (837)
T ss_pred             hcchhHHHhhhccC---chhHHHHHhHHhhcCcchhHHHhhhhhhhhccccccccchhhhhHHHHHHHhhcchhhhhhhh
Confidence            99999999999999   99999999987655444888899999999999988888878888899999999999 555999


Q ss_pred             hHHHHhHHHHHHHHHHHHhhhhcccCCcC
Q psy9276         543 NQSVFENCIGVHMEQIKAALAGERGSLAT  571 (583)
Q Consensus       543 N~~~Fq~~Veih~~~i~~~l~~~~~~l~~  571 (583)
                      |.+.||.+||+|++|++..+ +..|++.+
T Consensus       610 er~~lq~yvE~~~k~~~~l~-s~~~~~~~  637 (837)
T KOG1019|consen  610 EREKLQDYVESVRKTYHELR-SEAGELLG  637 (837)
T ss_pred             HHHHHHHHHHhhhcchhhhh-cccccccc
Confidence            99999999999999999999 88777654

>KOG1019|consensus

Probab=99.78  E-value=1.1e-19  Score=203.63  Aligned_cols=230  Identities=17%  Similarity=0.154  Sum_probs=197.6

Q ss_pred             CCCCchhhhHH--HHHHHHhhcCccccccceeecccccCCccccccchHHHHHHHhCCCCcccccchhHHHHHHhhhCCC
Q psy9276         143 SSPDRNLGQRV--GMKLRNLLKLPKAYRFVCYEFFYSNIDRPLFNDNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKP  220 (583)
Q Consensus       143 ~~pd~~~~q~~--g~rL~n~Lk~pka~RW~~~EwFYS~IDkp~F~~nEF~~~L~e~fP~l~trkLtR~EW~~IRr~mGKP  220 (583)
                      -++..-+.+.|  ...+.+|+.++-..+||++||||+++|.+||..-+|..||.+ .++.++.++++++|.+|-.++|.|
T Consensus       523 ~s~n~~Sq~~l~~~~kre~c~~~~~~~vd~i~~~~~~~~~~l~~~k~~~Td~L~~-v~lg~~p~~s~V~~~vl~~~lqep  601 (837)
T KOG1019|consen  523 FSRNDLSQSELLPKAKREECSSQAGRTVDHINEGFYSANPHLGFLKMEFTDYLNH-VRLGGTPRLSAVEWSVLKSSLQEP  601 (837)
T ss_pred             ccccchhHHHhcchhHHHhhhccCchhHHHHHhHHhhcCcchhHHHhhhhhhhhc-cccccccchhhhhHHHHHHHhhcc
Confidence            35555555555  357899999999999999999999999999999999999986 688899999999999999999999


Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCCCCCCccccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeE
Q psy9276         221 RRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYR  300 (583)
Q Consensus       221 RRfS~aFl~eER~kLe~~R~~IR~lqq~~~~d~~~~~~LP~~IP~PL~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~Yr  300 (583)
                      |  |..|..+||++|+.|++.+|.++.....  .....++.+..+|+.||    |.||.+ +++|+|.|+++|+  +.|-
T Consensus       602 r--s~~~~~~er~~lq~yvE~~~k~~~~l~s--~~~~~~~t~~~r~~d~~----~s~p~t-~e~~d~~~~~~~~--n~~~  670 (837)
T KOG1019|consen  602 R--STRILQEEREKLQDYVESVRKTYHELRS--EAGELLGTDLARKLDVG----ASHPKT-REIHDGKILTVDH--NKCN  670 (837)
T ss_pred             h--hhhhhhhHHHHHHHHHHhhhcchhhhhc--cccccccchhccccccc----cCCcch-hhhhhhhhhhccc--ccCc
Confidence            9  9999999999999999999998764221  23578899999999999    999997 7999999999998  6899


Q ss_pred             EEecCCCCceeeecCcccccCCCcccchhhhhhhhhccCCCCCCCCCCCCCCCCcccccchhhhhhhccCCccHHHHHHH
Q psy9276         301 ITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQMFFASVPNDHTNRTGKPEPEAMDANHIDKELEGMLGEYPVELLEQV  380 (583)
Q Consensus       301 V~Fdr~~lgv~~VpD~evms~~~~e~l~lssi~~~~~~sp~~~sp~~~~dPl~g~~~~~~~~~~~~~~iG~~p~~lL~~l  380 (583)
                      |-||  .+|++.|||.+||++++                                                         
T Consensus       671 ~~~~--~~~a~~~~~q~~~~ln~---------------------------------------------------------  691 (837)
T KOG1019|consen  671 VLFD--KLGAELVMDQDCMPLNP---------------------------------------------------------  691 (837)
T ss_pred             cchh--hhcccccchhhccccCh---------------------------------------------------------
Confidence            9998  67799999999988743                                                         


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcHHHHHHhhcCCC---C-CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q psy9276         381 VRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEP---Y-DRAFQKKYAGHILRLEKINKDVNTVLASLSVNLK  448 (583)
Q Consensus       381 v~LsKlL~~Ke~lV~~L~~MN~EAE~~~s~g~~---~-~e~FQrrYA~vvi~Le~vN~~L~~~L~~Lq~~~~  448 (583)
                           ++++++.+..+|..||++.++.++.|..   + .+-|+..|+.+..++...|..+...|.+..++..
T Consensus       692 -----~~dk~e~~~r~~d~~~~~~~e~q~~g~~na~~~s~~~~~~~~~v~fq~~~~~d~~~~~L~g~~q~~~  758 (837)
T KOG1019|consen  692 -----LEDKPEGLRRQIDKCLEKEKEAQLGGHENAGYSSLFRPDELENVEFQMNQQLDPEEPHLDGKVQHNT  758 (837)
T ss_pred             -----hhhhhhhhhhhhhHHHHHHHHHHhCCCCCcCchhhcCchhHHHHHHHHHhccCchhhhhhhhhhccc
Confidence                 3345666777788889888888887753   2 3889999999999999999999999988888654

>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane

Probab=92.09  E-value=0.72  Score=37.77  Aligned_cols=40  Identities=23%  Similarity=0.516  Sum_probs=31.4

Q ss_pred             ccccCCCEEEEEecCCCCcc-eeeEEEEEeCCCCeeEEEecCC
Q psy9276         265 IQLVVGTKVTARVRSPQDGL-FTGVVDAYDTSNNTYRITFDRQ  306 (583)
Q Consensus       265 ~PL~VG~kV~Arl~~~~~gL-~~G~Vlavd~~~~~YrV~Fdr~  306 (583)
                      +-+..|.+|.++-|.  +.+ |.|.|+++|.....|.|+|+-.
T Consensus         4 ~k~~~Ge~V~~rWP~--s~lYYe~kV~~~d~~~~~y~V~Y~DG   44 (55)
T PF09465_consen    4 RKFAIGEVVMVRWPG--SSLYYEGKVLSYDSKSDRYTVLYEDG   44 (55)
T ss_dssp             SSS-SS-EEEEE-TT--TS-EEEEEEEEEETTTTEEEEEETTS
T ss_pred             ccccCCCEEEEECCC--CCcEEEEEEEEecccCceEEEEEcCC
Confidence            557899999999876  455 5999999999999999999863

It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.

>PF15057 DUF4537: Domain of unknown function (DUF4537)

Probab=91.17  E-value=0.46  Score=44.03  Aligned_cols=49  Identities=31%  Similarity=0.547  Sum_probs=38.2

Q ss_pred             CCEEEEEecCCCCcc-eeeEEEEEeCCCCeeEEEecCCCCceeeecCcccccCCC
Q psy9276         270 GTKVTARVRSPQDGL-FTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDT  323 (583)
Q Consensus       270 G~kV~Arl~~~~~gL-~~G~Vlavd~~~~~YrV~Fdr~~lgv~~VpD~evms~~~  323 (583)
                      ||+|+||...  ||+ |.|+|...- ...+|.|.|+...  +..|+..++++...
T Consensus         1 g~~VlAR~~~--DG~YY~GtV~~~~-~~~~~lV~f~~~~--~~~v~~~~iI~~~~   50 (124)
T PF15057_consen    1 GQKVLARREE--DGFYYPGTVKKCV-SSGQFLVEFDDGD--TQEVPISDIIALSD   50 (124)
T ss_pred             CCeEEEeeCC--CCcEEeEEEEEcc-CCCEEEEEECCCC--EEEeChHHeEEccC
Confidence            8999999753  775 999999876 6789999995443  67777777766653

>smart00333 TUDOR Tudor domain

Probab=90.54  E-value=0.9  Score=35.31  Aligned_cols=49  Identities=22%  Similarity=0.386  Sum_probs=36.7

Q ss_pred             cccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCCCCceeeecCccc
Q psy9276         266 QLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEV  318 (583)
Q Consensus       266 PL~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~~lgv~~VpD~ev  318 (583)
                      ++.+|+.|.|+. . ...-|.|+|+.++.. ..|.|.|.--| ..+.|+=.++
T Consensus         2 ~~~~G~~~~a~~-~-d~~wyra~I~~~~~~-~~~~V~f~D~G-~~~~v~~~~l   50 (57)
T smart00333        2 TFKVGDKVAARW-E-DGEWYRARIIKVDGE-QLYEVFFIDYG-NEEVVPPSDL   50 (57)
T ss_pred             CCCCCCEEEEEe-C-CCCEEEEEEEEECCC-CEEEEEEECCC-ccEEEeHHHe
Confidence            468999999997 3 456899999999986 89999998644 1344443333

Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=87.46  E-value=1.7  Score=34.53  Aligned_cols=38  Identities=16%  Similarity=0.294  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecC
Q psy9276         266 QLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDR  305 (583)
Q Consensus       266 PL~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr  305 (583)
                      -+.+|+.|-|+.+. .++-+.|+|+.++. ++.|.|.|+.
T Consensus         2 ~~~~G~~Ve~~~~~-~~~W~~a~V~~~~~-~~~~~V~~~~   39 (61)
T smart00743        2 DFKKGDRVEVFSKE-EDSWWEAVVTKVLG-DGKYLVRYLT   39 (61)
T ss_pred             CcCCCCEEEEEECC-CCEEEEEEEEEECC-CCEEEEEECC
Confidence            36899999999865 57889999999987 5789999987

Domain in plant sequences with possible chromatin-associated functions.

>PF15057 DUF4537: Domain of unknown function (DUF4537)

Probab=86.98  E-value=1.1  Score=41.65  Aligned_cols=56  Identities=27%  Similarity=0.239  Sum_probs=42.4

Q ss_pred             CccccCCCEEEEEecCCCCcceeeEEEEE----eCCCCeeEEEecCCCCceeeecCcccccC
Q psy9276         264 PIQLVVGTKVTARVRSPQDGLFTGVVDAY----DTSNNTYRITFDRQGLGTQSIPDYEVLSN  321 (583)
Q Consensus       264 P~PL~VG~kV~Arl~~~~~gL~~G~Vlav----d~~~~~YrV~Fdr~~lgv~~VpD~evms~  321 (583)
                      -.||.+|++|+|.++.....-..|+|++.    ...+..|.|.|-...  ...||.-+|.-+
T Consensus        53 ~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f~ng~--~~~vp~~~~~~I  112 (124)
T PF15057_consen   53 RHSLQVGDKVLAPWEPDDCRYGPGTVIAGPERRASEDKEYTVRFYNGK--TAKVPRGEVIWI  112 (124)
T ss_pred             cCcCCCCCEEEEecCcCCCEEeCEEEEECccccccCCceEEEEEECCC--CCccchhhEEEC
Confidence            67999999999998654445667999963    445689999998766  566777666544

>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes

Probab=85.92  E-value=1.8  Score=40.55  Aligned_cols=53  Identities=19%  Similarity=0.306  Sum_probs=35.3

Q ss_pred             ccccCCCEEEEEecCCCCcceeeEEEEE-eCCCCeeEEEecCCCCc--eeeecCccc
Q psy9276         265 IQLVVGTKVTARVRSPQDGLFTGVVDAY-DTSNNTYRITFDRQGLG--TQSIPDYEV  318 (583)
Q Consensus       265 ~PL~VG~kV~Arl~~~~~gL~~G~Vlav-d~~~~~YrV~Fdr~~lg--v~~VpD~ev  318 (583)
                      .-+..|++|+|+-|.| ..+|.|+|.+. ......|++.|+-.+-.  .+.||.--|
T Consensus        70 ~~f~~g~~VLAlYP~T-T~FY~A~V~~~p~~~~~~y~l~Fedd~~~~~~~~V~~r~V  125 (130)
T PF07039_consen   70 AEFPKGTKVLALYPDT-TCFYPATVVSPPKKKSGEYKLKFEDDEDADGYREVPQRYV  125 (130)
T ss_dssp             GS--TT-EEEEE-TTS-SEEEEEEEEEE-SSTTS-EEEEECTTTSTTSBEEE-GGGE
T ss_pred             hhCCCCCEEEEECCCC-ceEEEEEEEeCCCCCCCcEEEEEeCCCCcCCcEEEccceE
Confidence            5578999999999996 59999999987 23567999999976632  255554433

It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	583
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 6e-08
 Identities = 75/477 (15%), Positives = 125/477 (26%), Gaps = 165/477 (34%)

Query: 116 LQSTLTETPEKFNDSKLKGSKKSRVR------CSSPDRNLGQRVGMKLR-NLLKLPKAYR 168
            +S L++  E+ +   +     S          S  +  + + V   LR N   L    +
Sbjct: 42  PKSILSK--EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 169 FVC------YEFFYSNIDRPLFNDNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRR 222
                       +    DR L+NDN       + F    KY  SR +         K R+
Sbjct: 100 TEQRQPSMMTRMYIEQRDR-LYNDN-------QVFA---KYNVSRLQ------PYLKLRQ 142

Query: 223 CSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQD 282
                       L   +NV+     G  G      D+     +Q  +  K+         
Sbjct: 143 ALL--------ELRPAKNVLIDGVLG-SGKTWVALDVCLSYKVQCKMDFKI--------- 184

Query: 283 GLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQMFFASVPN 342
                           + +                    ++PET+     LQ     +  
Sbjct: 185 ----------------FWLNLKNC---------------NSPETVLEM--LQKLLYQIDP 211

Query: 343 DHTNRTGKPEPEAMDANHIDKELEGMLGE--YPVELLEQV---VRFKKLLK-FK---KTE 393
           + T+R+       +  + I  EL  +L    Y   LL  V   V+  K    F    K  
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNLSCKIL 269

Query: 394 V----YQIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKK 449
           +     Q+ D  S A    +  + +                             S+ LK 
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-------------------VKSLLLKY 310

Query: 450 LSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQP-VVSLITDLTAL 508
           L               P DL +E        V T N           P  +S+I    A 
Sbjct: 311 LDC------------RPQDLPRE--------VLTTN-----------PRRLSII----AE 335

Query: 509 VLQ-----IKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNN-QSVFENCIGVHMEQIK 559
            ++          H        + L   +      L P   + +F+    V      
Sbjct: 336 SIRDGLATWDNWKH-----VNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAH 386

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	583
4hcz_A	58	PHD finger protein 1; protein-peptide complex, tud	95.6
2e5p_A	68	Protein PHF1, PHD finger protein 1; tudor domain,	94.1
2m0o_A	79	PHD finger protein 1; tudor domain, H3K36ME3 bindi	93.91
3p8d_A	67	Medulloblastoma antigen MU-MB-50.72; tudor domain,	93.67
4a4f_A	64	SurviVal of motor neuron-related-splicing factor;	93.61
2qqr_A	118	JMJC domain-containing histone demethylation prote	93.61
2l8d_A	66	Lamin-B receptor; DNA binding protein; NMR {Gallus	93.59
3qii_A	85	PHD finger protein 20; tudor domain, structural ge	93.39
2equ_A	74	PHD finger protein 20-like 1; tudor domain, struct	93.36
1mhn_A	59	SurviVal motor neuron protein; SMN, SMA, spinal mu	93.22
2dig_A	68	Lamin-B receptor; tudor domain, integral nuclear e	93.14
2e5q_A	63	PHD finger protein 19; tudor domain, isoform B, st	92.51
1g5v_A	88	SurviVal motor neuron protein 1; mRNA processing,	92.22
2xk0_A	69	Polycomb protein PCL; transcription, aromatic CAGE	92.1
2eqj_A	66	Metal-response element-binding transcription facto	92.09
2xdp_A	123	Lysine-specific demethylase 4C; oxidoreductase, hi	91.84
2ldm_A	81	Uncharacterized protein; PHF20, tudor domain, epig	89.95
3mea_A	180	SAGA-associated factor 29 homolog; structural geno	89.33
2d9t_A	78	Tudor domain-containing protein 3; structural geno	86.8
3pnw_C	77	Tudor domain-containing protein 3; FAB, structural	86.64
3s6w_A	54	Tudor domain-containing protein 3; methylated argi	86.43
3mp6_A	522	MBP, SGF29, maltose-binding periplasmic protein, l	85.28
3sd4_A	69	PHD finger protein 20; tudor domain, transcription	84.59
2eqm_A	88	PHD finger protein 20-like 1; structural genomics,	83.45
3dlm_A	213	Histone-lysine N-methyltransferase setdb1; setdb1_	83.25
1ssf_A	156	Transformation related protein 53 binding protein	83.16
2g3r_A	123	Tumor suppressor P53-binding protein 1; tandem tud	82.77
3oa6_A	110	MALE-specific lethal 3 homolog; chromodomain, MSL3	82.07

>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}

Probab=95.60  E-value=0.021  Score=45.80  Aligned_cols=38  Identities=29%  Similarity=0.531  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEecCCCCc-ceeeEEEEEeCCCCeeEEEecCCC
Q psy9276         267 LVVGTKVTARVRSPQDG-LFTGVVDAYDTSNNTYRITFDRQG  307 (583)
Q Consensus       267 L~VG~kV~Arl~~~~~g-L~~G~Vlavd~~~~~YrV~Fdr~~  307 (583)
                      |.+|+.|+|+..   || .|.|+|..|+....+|.|+|+-..
T Consensus         4 f~~GedVLarws---DG~fYlGtI~~V~~~~~~clV~F~D~s   42 (58)
T 4hcz_A            4 LWEGQDVLARWT---DGLLYLGTIKKVDSAREVCLVQFEDDS   42 (58)
T ss_dssp             CCTTCEEEEECT---TSCEEEEEEEEEETTTTEEEEEETTSC
T ss_pred             cccCCEEEEEec---CCCEEeEEEEEEecCCCEEEEEEcCCC
Confidence            679999999864   55 699999999999889999998654

>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.10  E-value=0.086  Score=43.37  Aligned_cols=40  Identities=28%  Similarity=0.495  Sum_probs=33.7

Q ss_pred             ccccCCCEEEEEecCCCCc-ceeeEEEEEeCCCCeeEEEecCCC
Q psy9276         265 IQLVVGTKVTARVRSPQDG-LFTGVVDAYDTSNNTYRITFDRQG  307 (583)
Q Consensus       265 ~PL~VG~kV~Arl~~~~~g-L~~G~Vlavd~~~~~YrV~Fdr~~  307 (583)
                      .-|.+|+-|+|+..   || +|.|+|..|+....+|.|+|.-..
T Consensus         8 ~~f~eGqdVLarWs---DGlfYlGtV~kV~~~~~~ClV~FeD~s   48 (68)
T 2e5p_A            8 PRLWEGQDVLARWT---DGLLYLGTIKKVDSAREVCLVQFEDDS   48 (68)
T ss_dssp             CCCCTTCEEEEECT---TSSEEEEEEEEEETTTTEEEEEETTTE
T ss_pred             cccccCCEEEEEec---CCcEEEeEEEEEecCCcEEEEEEccCC
Confidence            35789999999873   56 599999999998899999997543

>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}

Probab=93.91  E-value=0.063  Score=45.25  Aligned_cols=40  Identities=28%  Similarity=0.495  Sum_probs=34.4

Q ss_pred             ccccCCCEEEEEecCCCCc-ceeeEEEEEeCCCCeeEEEecCCC
Q psy9276         265 IQLVVGTKVTARVRSPQDG-LFTGVVDAYDTSNNTYRITFDRQG  307 (583)
Q Consensus       265 ~PL~VG~kV~Arl~~~~~g-L~~G~Vlavd~~~~~YrV~Fdr~~  307 (583)
                      .-+.+|+-|+|+..   || +|.|+|..|+....+|.|+|+-..
T Consensus        25 ~~f~eGeDVLarws---DGlfYLGTI~kV~~~~e~ClV~F~D~S   65 (79)
T 2m0o_A           25 PRLWEGQDVLARWT---DGLLYLGTIKKVDSAREVCLVQFEDDS   65 (79)
T ss_dssp             CCCCTTCEEEBCCT---TSCCCEEEEEEEETTTTEEEEEETTSC
T ss_pred             ceeccCCEEEEEec---CCCEEeEEEEEeccCCCEEEEEEcCCC
Confidence            35899999999763   66 599999999999999999998654

>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}

Probab=93.67  E-value=0.13  Score=42.26  Aligned_cols=51  Identities=20%  Similarity=0.326  Sum_probs=37.7

Q ss_pred             CCccccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCCCCceeeecCccc
Q psy9276         263 IPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEV  318 (583)
Q Consensus       263 IP~PL~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~~lgv~~VpD~ev  318 (583)
                      +|.-+.+|.+|.|+-  .....|.|+|.+++.. .+|.|+|+- + -++.|.-.+|
T Consensus         3 ~~~~~~vGd~vmArW--~D~~yYpA~I~si~~~-~~Y~V~F~d-G-~~etvk~~~i   53 (67)
T 3p8d_A            3 MSSEFQINEQVLACW--SDCRFYPAKVTAVNKD-GTYTVKFYD-G-VVQTVKHIHV   53 (67)
T ss_dssp             --CCCCTTCEEEEEC--TTSCEEEEEEEEECTT-SEEEEEETT-S-CEEEEEGGGE
T ss_pred             cCcccccCCEEEEEc--CCCCEeeEEEEEECCC-CeEEEEEeC-C-ceEEEeHHHc
Confidence            356789999999996  3345799999999875 689999987 3 2455554444

>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*

Probab=93.61  E-value=0.3  Score=38.88  Aligned_cols=53  Identities=26%  Similarity=0.348  Sum_probs=41.7

Q ss_pred             ccccCCCEEEEEecCCCCc-ceeeEEEEEeCCCCeeEEEecCCCCc-eeeecCcccccC
Q psy9276         265 IQLVVGTKVTARVRSPQDG-LFTGVVDAYDTSNNTYRITFDRQGLG-TQSIPDYEVLSN  321 (583)
Q Consensus       265 ~PL~VG~kV~Arl~~~~~g-L~~G~Vlavd~~~~~YrV~Fdr~~lg-v~~VpD~evms~  321 (583)
                      ..+.+|+.+.|+...  || .|.++|.+++..+..|.|.|.-  .| .+.|+=.++.++
T Consensus         7 ~~~~vGd~c~A~~s~--Dg~wYrA~I~~v~~~~~~~~V~fvd--YGn~e~V~~~~Lrpl   61 (64)
T 4a4f_A            7 HSWKVGDKCMAVWSE--DGQCYEAEIEEIDEENGTAAITFAG--YGNAEVTPLLNLKPV   61 (64)
T ss_dssp             SCCCTTCEEEEECTT--TSSEEEEEEEEEETTTTEEEEEETT--TTEEEEEEGGGEECC
T ss_pred             CCCCCCCEEEEEECC--CCCEEEEEEEEEcCCCCEEEEEEEe--cCCEEEEeHHHcEeC
Confidence            467899999999853  45 7999999999877899999984  44 677766666554

>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*

Probab=93.61  E-value=0.048  Score=49.26  Aligned_cols=40  Identities=20%  Similarity=0.375  Sum_probs=34.2

Q ss_pred             ccccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCCC
Q psy9276         265 IQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQG  307 (583)
Q Consensus       265 ~PL~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~~  307 (583)
                      .++.+|++|+|.|+  ....|.|+|.+.... ..|.|.||-..
T Consensus         4 ~~v~vGq~V~akh~--ngryy~~~V~~~~~~-~~y~V~F~DgS   43 (118)
T 2qqr_A            4 QSITAGQKVISKHK--NGRFYQCEVVRLTTE-TFYEVNFDDGS   43 (118)
T ss_dssp             SCCCTTCEEEEECT--TSSEEEEEEEEEEEE-EEEEEEETTSC
T ss_pred             ceeccCCEEEEECC--CCCEEeEEEEEEeeE-EEEEEEcCCCC
Confidence            57899999999987  367899999998765 79999999654

>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}

Probab=93.59  E-value=0.24  Score=40.56  Aligned_cols=55  Identities=15%  Similarity=0.265  Sum_probs=43.6

Q ss_pred             CccccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCCCCceeeecCcccccC
Q psy9276         264 PIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSN  321 (583)
Q Consensus       264 P~PL~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~~lgv~~VpD~evms~  321 (583)
                      |.-+.||..|.||-++. .+.|.+.|.++|..+..|.|.|-. | -++.++--||=|.
T Consensus         7 ~~~~~vgd~VmaRW~Gd-~~yYparI~Si~s~~~~Y~V~fKd-g-T~e~L~~kDIkp~   61 (66)
T 2l8d_A            7 NRKYADGEVVMGRWPGS-VLYYEVQVTSYDDASHLYTVKYKD-G-TELALKESDIRLQ   61 (66)
T ss_dssp             SSSSCSSCEEEEECTTS-SCEEEEEEEEEETTTTEEEEEETT-S-CEEEEEGGGEECS
T ss_pred             ceEeecCCEEEEEcCCC-ccceEEEEEEeccCCceEEEEecC-C-CEEeechhccccc
Confidence            56689999999999774 678999999999999999999987 3 2455555555433

>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}

Probab=93.39  E-value=0.14  Score=43.99  Aligned_cols=52  Identities=19%  Similarity=0.270  Sum_probs=37.1

Q ss_pred             CCCccccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCCCCceeeecCccc
Q psy9276         262 EIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEV  318 (583)
Q Consensus       262 ~IP~PL~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~~lgv~~VpD~ev  318 (583)
                      +=|..+.||.+|.|+-  .....|.|+|.+|+.. .+|.|+|+- | -++.|.-.+|
T Consensus        17 ~~~~~f~vGd~VlArW--~D~~yYPAkI~sV~~~-~~YtV~F~D-G-~~etvk~~~I   68 (85)
T 3qii_A           17 GGSSEFQINEQVLACW--SDCRFYPAKVTAVNKD-GTYTVKFYD-G-VVQTVKHIHV   68 (85)
T ss_dssp             ----CCCTTCEEEEEC--TTSCEEEEEEEEECTT-SEEEEEETT-S-CEEEEEGGGE
T ss_pred             cCCcccccCCEEEEEe--CCCCEeeEEEEEECCC-CeEEEEEeC-C-CeEEecHHHc
Confidence            4467889999999997  3345799999999875 689999987 2 1455544444

>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.36  E-value=0.21  Score=41.47  Aligned_cols=54  Identities=13%  Similarity=0.238  Sum_probs=41.9

Q ss_pred             CccccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCCCCceeeecCcccccCC
Q psy9276         264 PIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSND  322 (583)
Q Consensus       264 P~PL~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~~lgv~~VpD~evms~~  322 (583)
                      +..+.||+.|.|+..  ....|.|+|.+++.. .+|.|.|+--  -.+.|+-.+|-|..
T Consensus         7 ~~~~kvGd~clA~ws--Dg~~Y~A~I~~v~~~-~~~~V~f~Dy--n~e~v~~~~lrplp   60 (74)
T 2equ_A            7 GFDFKAGEEVLARWT--DCRYYPAKIEAINKE-GTFTVQFYDG--VIRCLKRMHIKAMP   60 (74)
T ss_dssp             CCCCCTTCEEEEECS--SSSEEEEEEEEESTT-SSEEEEETTS--CEEEECGGGEECCC
T ss_pred             CCCCCCCCEEEEECC--CCCEEEEEEEEECCC-CEEEEEEecC--CeEEecHHHCeeCC
Confidence            356789999999974  345799999999864 6899999854  57777777765553

>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*

Probab=93.22  E-value=0.35  Score=37.78  Aligned_cols=53  Identities=21%  Similarity=0.323  Sum_probs=41.0

Q ss_pred             cccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCCCCc-eeeecCcccccC
Q psy9276         266 QLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLG-TQSIPDYEVLSN  321 (583)
Q Consensus       266 PL~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~~lg-v~~VpD~evms~  321 (583)
                      .+.+|+.|.|+... ....|.++|.+++..+.+|.|.|.  +.| .+.|+=.++.+.
T Consensus         3 ~~~~G~~c~A~~s~-Dg~wYrA~I~~i~~~~~~~~V~f~--DYGn~e~v~~~~Lr~~   56 (59)
T 1mhn_A            3 QWKVGDKCSAIWSE-DGCIYPATIASIDFKRETCVVVYT--GYGNREEQNLSDLLSP   56 (59)
T ss_dssp             CCCTTCEEEEECTT-TSCEEEEEEEEEETTTTEEEEEET--TTTEEEEEEGGGCBCT
T ss_pred             cCCcCCEEEEEECC-CCCEEEEEEEEEcCCCCEEEEEEE--cCCCEEEEcHHHeeCC
Confidence            46899999998753 234799999999987789999996  455 677776666554

>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=93.14  E-value=0.22  Score=40.99  Aligned_cols=52  Identities=12%  Similarity=0.261  Sum_probs=41.8

Q ss_pred             CccccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCCCCceeeecCccc
Q psy9276         264 PIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEV  318 (583)
Q Consensus       264 P~PL~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~~lgv~~VpD~ev  318 (583)
                      |.-+.||..|.||-+.. ...|.+.|.+++..+.-|.|.|-. + -++.++--||
T Consensus        10 ~~~f~vgd~VmaRW~Gd-~~yYparItSits~~~~Y~VkfKd-g-T~e~L~~kDI   61 (68)
T 2dig_A           10 SRKFADGEVVRGRWPGS-SLYYEVEILSHDSTSQLYTVKYKD-G-TELELKENDI   61 (68)
T ss_dssp             CCSSCSSCEEEEECTTT-CCEEEEEEEEEETTTTEEEEECTT-S-CEEEEETTTE
T ss_pred             ceEeecCCEEEEEccCC-ccceEEEEEEeccCCceEEEEecC-C-CEEEechhcc
Confidence            56789999999999864 678999999999999999999987 2 1455444443

>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.51  E-value=0.14  Score=41.66  Aligned_cols=40  Identities=25%  Similarity=0.424  Sum_probs=33.7

Q ss_pred             ccccCCCEEEEEecCCCCc-ceeeEEEEEeCCCCeeEEEecCCC
Q psy9276         265 IQLVVGTKVTARVRSPQDG-LFTGVVDAYDTSNNTYRITFDRQG  307 (583)
Q Consensus       265 ~PL~VG~kV~Arl~~~~~g-L~~G~Vlavd~~~~~YrV~Fdr~~  307 (583)
                      .-|.+|+-|+|+..   || +|.|+|..|+....+|.|+|.-..
T Consensus         6 ~~f~eGqdVLarWs---DGlfYlgtV~kV~~~~~~ClV~FeD~s   46 (63)
T 2e5q_A            6 SGLTEGQYVLCRWT---DGLYYLGKIKRVSSSKQSCLVTFEDNS   46 (63)
T ss_dssp             CCCCTTCEEEEECT---TSCEEEEEECCCCSTTSEEEEEETTSC
T ss_pred             cceecCCEEEEEec---CCCEEEEEEEEEecCCCEEEEEEccCc
Confidence            45789999999863   56 599999999998889999997554

>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=92.22  E-value=0.45  Score=40.68  Aligned_cols=54  Identities=20%  Similarity=0.305  Sum_probs=42.2

Q ss_pred             ccccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCCCCc-eeeecCcccccC
Q psy9276         265 IQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLG-TQSIPDYEVLSN  321 (583)
Q Consensus       265 ~PL~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~~lg-v~~VpD~evms~  321 (583)
                      .++.||+.|.|+... ....|.++|.+++..+.+|.|.|.  +.| .+.|+=.++.|.
T Consensus         9 ~~~kvGd~C~A~ys~-Dg~wYrA~I~~i~~~~~~~~V~fi--DYGN~E~V~~~~Lrp~   63 (88)
T 1g5v_A            9 QQWKVGDKCSAIWSE-DGCIYPATIASIDFKRETCVVVYT--GYGNREEQNLSDLLSP   63 (88)
T ss_dssp             CCCCSSCEEEEECTT-TCCEEEEEEEEEETTTTEEEEEET--TTCCEEEEEGGGCBCC
T ss_pred             CCCCCCCEEEEEECC-CCCEEEEEEEEecCCCCEEEEEEe--cCCCEEEEcHHHcccC
Confidence            357899999999753 234699999999987789999995  555 677776666665

>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}

Probab=92.10  E-value=0.25  Score=40.83  Aligned_cols=39  Identities=21%  Similarity=0.478  Sum_probs=30.4

Q ss_pred             ccccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCCC
Q psy9276         265 IQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQG  307 (583)
Q Consensus       265 ~PL~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~~  307 (583)
                      --+.+|+-|+|+..  ...+|.|+|  ||....+|.|+|+-..
T Consensus        14 ~~~~~geDVL~rw~--DG~fYLGtI--Vd~~~~~ClV~FeD~S   52 (69)
T 2xk0_A           14 VTYALQEDVFIKCN--DGRFYLGTI--IDQTSDQYLIRFDDQS   52 (69)
T ss_dssp             CCCCTTCEEEEECT--TSCEEEEEE--EEECSSCEEEEETTCC
T ss_pred             cccccCCeEEEEec--CCCEEEEEE--EecCCceEEEEecCCc
Confidence            34789999999853  234699999  5666789999998665

>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}

Probab=92.09  E-value=0.27  Score=40.33  Aligned_cols=40  Identities=23%  Similarity=0.424  Sum_probs=33.9

Q ss_pred             CccccCCCEEEEEecCCCCc-ceeeEEEEEeCCCCeeEEEecCC
Q psy9276         264 PIQLVVGTKVTARVRSPQDG-LFTGVVDAYDTSNNTYRITFDRQ  306 (583)
Q Consensus       264 P~PL~VG~kV~Arl~~~~~g-L~~G~Vlavd~~~~~YrV~Fdr~  306 (583)
                      +.-+.+|+-|.|+.   .|| .|.|+|..|+....+|.|+|.-.
T Consensus        11 ~~~f~vGddVLA~w---tDGl~Y~gtI~~V~~~~gtC~V~F~D~   51 (66)
T 2eqj_A           11 ACKFEEGQDVLARW---SDGLFYLGTIKKINILKQSCFIIFEDS   51 (66)
T ss_dssp             CCCSCTTCEEEEEC---TTSCEEEEEEEEEETTTTEEEEEETTT
T ss_pred             cccccCCCEEEEEE---ccCcEEEeEEEEEccCCcEEEEEEccC
Confidence            34689999999986   366 59999999999889999999743

>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}

Probab=91.84  E-value=0.047  Score=49.65  Aligned_cols=42  Identities=21%  Similarity=0.357  Sum_probs=35.5

Q ss_pred             CccccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCCCC
Q psy9276         264 PIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGL  308 (583)
Q Consensus       264 P~PL~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~~l  308 (583)
                      +.++.+|++|+|.|+.  ..+|.|+|.+... ...|.|.||-...
T Consensus         4 ~~~v~vGq~V~ak~~n--gryy~~~V~~~~~-~~~y~V~F~DgS~   45 (123)
T 2xdp_A            4 EKVISVGQTVITKHRN--TRYYSCRVMAVTS-QTFYEVMFDDGSF   45 (123)
T ss_dssp             CCCCCTTCCCCCCCCC--CCCCCCEEEEEEE-EEEEEEEETTSCE
T ss_pred             ccccccCCEEEEECCC--CcEEeEEEEEEee-EEEEEEEcCCCCc
Confidence            5789999999999863  6789999999886 5799999996653

>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}

Probab=89.95  E-value=0.049  Score=46.25  Aligned_cols=54  Identities=19%  Similarity=0.314  Sum_probs=41.1

Q ss_pred             CCccccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCCCCceeeecCcccccC
Q psy9276         263 IPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSN  321 (583)
Q Consensus       263 IP~PL~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~~lgv~~VpD~evms~  321 (583)
                      +|..+.+|++|.|+..  ....|.|+|.+++.. .+|.|.|+- | -.+.|+=.+|-|.
T Consensus         3 ~~~~~kvGd~clAkws--Dg~wY~A~I~~v~~~-~~y~V~F~D-G-n~E~V~~s~LrPl   56 (81)
T 2ldm_A            3 MSSEFQINEQVLASWS--DSRFYPAKVTAVNKD-GTYTVKFYD-G-VVQTVKHIHVKAF   56 (81)
Confidence            4677899999999865  456899999999854 589999986 4 3566665555444

>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A

Probab=89.33  E-value=0.57  Score=45.03  Aligned_cols=41  Identities=12%  Similarity=0.214  Sum_probs=34.4

Q ss_pred             cccCCCEEEEEecCCCCcceeeEEEEEeCC-CCeeEEEecCCC
Q psy9276         266 QLVVGTKVTARVRSPQDGLFTGVVDAYDTS-NNTYRITFDRQG  307 (583)
Q Consensus       266 PL~VG~kV~Arl~~~~~gL~~G~Vlavd~~-~~~YrV~Fdr~~  307 (583)
                      -+..|++|+|+-|.| .-+|.++|.+.... ...|+|.||-.+
T Consensus       116 ~f~~G~~VLAlYP~T-T~FY~A~V~~~p~~~~~~y~L~FEdde  157 (180)
T 3mea_A          116 LFQKEQLVLALYPQT-TCFYRALIHAPPQRPQDDYSVLFEDTS  157 (180)
T ss_dssp             SCCTTCEEEEECTTS-SEEEEEEEEECCSSTTCCEEEEEBCTT
T ss_pred             cCCCCCEEEEeCCCC-ceeeEEEEecCCCCCCCcEEEEEcCCC
Confidence            489999999999996 58999999987442 268999999765

>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1

Probab=86.80  E-value=2  Score=35.52  Aligned_cols=54  Identities=15%  Similarity=0.150  Sum_probs=41.2

Q ss_pred             ccccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCCCCc-eeeecCcccccC
Q psy9276         265 IQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLG-TQSIPDYEVLSN  321 (583)
Q Consensus       265 ~PL~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~~lg-v~~VpD~evms~  321 (583)
                      ....+|+.|.|+... ....|.++|++++..+.+|.|.|.  +.| ++.|+=.++.++
T Consensus         8 ~~~~~G~~c~A~~s~-Dg~wYRA~I~~i~~~~~~~~V~fi--DYGN~e~V~~~~Lr~l   62 (78)
T 2d9t_A            8 KVWKPGDECFALYWE-DNKFYRAEVEALHSSGMTAVVKFT--DYGNYEEVLLSNIKPV   62 (78)
T ss_dssp             CCCCTTCEEEEECTT-TCCEEEEEEEEECSSSSEEEEEET--TTTEEEEEEGGGEEEC
T ss_pred             cCCCcCCEEEEEECC-CCCEEEEEEEEEeCCCCEEEEEEE--cCCCeEEEcHHHeEeC
Confidence            356899999998753 245799999999876789999995  555 677766666555

>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}

Probab=86.64  E-value=1.7  Score=35.91  Aligned_cols=54  Identities=17%  Similarity=0.114  Sum_probs=41.2

Q ss_pred             ccccCCCEEEEEecCCCCc-ceeeEEEEEeCCCCeeEEEecCCCCceeeecCcccccC
Q psy9276         265 IQLVVGTKVTARVRSPQDG-LFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSN  321 (583)
Q Consensus       265 ~PL~VG~kV~Arl~~~~~g-L~~G~Vlavd~~~~~YrV~Fdr~~lgv~~VpD~evms~  321 (583)
                      ..+.+|+.|.|+...  || .|.|+|.+++..+.+|.|.|.-=|. ++.|+=.++.++
T Consensus        16 ~~~kvGd~C~A~ys~--Dg~wYRA~I~~i~~~~~~~~V~fvDYGN-~e~V~~~~Lr~l   70 (77)
T 3pnw_C           16 KMWKPGDECFALYWE--DNKFYRAEVEALHSSGMTAVVKFIDYGN-YEEVLLSNIKPI   70 (77)
T ss_dssp             TTCCTTCEEEEEETT--TTEEEEEEEEEECTTSSEEEEEETTTCC-EEEEEGGGEECC
T ss_pred             CCCCcCCEEEEEECC--CCCEEEEEEEEEeCCCCEEEEEEEcCCC-eEEEeHHHeEEC
Confidence            346899999999843  55 6999999999877899999985442 677766666554

>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*

Probab=86.43  E-value=1.9  Score=32.83  Aligned_cols=51  Identities=16%  Similarity=0.158  Sum_probs=36.0

Q ss_pred             ccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCCCCceeeecCcccc
Q psy9276         267 LVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVL  319 (583)
Q Consensus       267 L~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~~lgv~~VpD~evm  319 (583)
                      ..+|+.+.|+... ...-|.|+|++++..+.+|.|.|.-=| ..+.||=.++-
T Consensus         2 wk~G~~c~A~~s~-Dg~wYrA~I~~i~~~~~~~~V~fvDYG-n~e~v~~~~lr   52 (54)
T 3s6w_A            2 WKPGDECFALYWE-DNKFYRAEVEALHSSGMTAVVKFIDYG-NYEEVLLSNIK   52 (54)
T ss_dssp             CCTTCEEEEEETT-TTEEEEEEEEEC--CCSEEEEEETTTC-CEEEEEGGGEE
T ss_pred             CCCCCEEEEEECC-CCCEEEEEEEEEeCCCCEEEEEEEccC-CeEEEeHHHEE
Confidence            4799999999853 234799999999887789999997433 25666544443

>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*

Probab=85.28  E-value=0.76  Score=48.82  Aligned_cols=39  Identities=28%  Similarity=0.411  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCCC
Q psy9276         267 LVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQG  307 (583)
Q Consensus       267 L~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~~  307 (583)
                      +++|++|+|+-|.+ -.+|.++|.+.- ....|+|+|+-.+
T Consensus       458 ~~~~~~v~a~~p~t-t~fy~a~v~~~~-~~~~~~~~f~~~~  496 (522)
T 3mp6_A          458 YPPGTKVLARYPET-TTFYPAIVIGTK-RDGTCRLRFDGEE  496 (522)
T ss_dssp             CCTTCEEEEECTTC-SEEEEEEEEEEC-TTSCEEEEETTC-
T ss_pred             CCCCCEEEEECCCC-cceEeEEEecCC-CCCeEEEEecCCC
Confidence            99999999999996 589999999964 4568999999654

>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A

Probab=84.59  E-value=2.1  Score=34.48  Aligned_cols=43  Identities=23%  Similarity=0.345  Sum_probs=34.8

Q ss_pred             CCCccccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCC
Q psy9276         262 EIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQ  306 (583)
Q Consensus       262 ~IP~PL~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~  306 (583)
                      .-+..|.||.||-|+-+.  .-.|.++|..||..+..++|.||.-
T Consensus         8 ~~~~~F~vGmkLEa~d~~--~p~~~AtV~~v~~~~~~~~VhfdGw   50 (69)
T 3sd4_A            8 RRGISFEVGAQLEARDRL--KNWYPAHIEDIDYEEGKVLIHFKRW   50 (69)
T ss_dssp             CTTCCCSTTCEEEEECTT--SCEEEEEEEEEETTTTEEEEEETTS
T ss_pred             CCCCCcCCCCEEEEEECC--CCccccEEEEEeccCCEEEEEeCCC
Confidence            345679999999998754  2249999999988889999999843

>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A

Probab=83.45  E-value=4.4  Score=34.44  Aligned_cols=49  Identities=16%  Similarity=0.289  Sum_probs=39.6

Q ss_pred             CCCCCCCCccccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCCC
Q psy9276         257 KDIPSEIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQG  307 (583)
Q Consensus       257 ~~LP~~IP~PL~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~~  307 (583)
                      +.-|..-+..|.||.||-|+.+.  .-.+...|..++.....|+|.||.=.
T Consensus        10 ~~~~~~~~~~F~vGmkLEA~D~~--~~~~~a~i~~v~~~~~~v~VHfdGW~   58 (88)
T 2eqm_A           10 KKPPNRPGITFEIGARLEALDYL--QKWYPSRIEKIDYEEGKMLVHFERWS   58 (88)
T ss_dssp             TSCCSCSSCCCCSSCEEEEECTT--SCEEEEEEEEEETTTTEEEEEESSST
T ss_pred             cCCCCCCcCcCCCCCEEEEEcCC--CCeeEEEEEEEeccCCEEEEEECCCC
Confidence            45566667889999999998753  23589999999988899999999654

>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}

Probab=83.25  E-value=2.1  Score=42.13  Aligned_cols=70  Identities=23%  Similarity=0.364  Sum_probs=46.6

Q ss_pred             cccCCCEEEEEecC-CCCcceeeEEEEEeCC--CCeeEEEecCCCCceeeecCcccccC-----CCcccc---hhhhhhh
Q psy9276         266 QLVVGTKVTARVRS-PQDGLFTGVVDAYDTS--NNTYRITFDRQGLGTQSIPDYEVLSN-----DTPETL---NRQSFLQ  334 (583)
Q Consensus       266 PL~VG~kV~Arl~~-~~~gL~~G~Vlavd~~--~~~YrV~Fdr~~lgv~~VpD~evms~-----~~~e~l---~lssi~~  334 (583)
                      -|.||+||+|.... ....+|.|.|...+..  ...|.|-||-..  ...|+--+|+..     +.=+-+   +.+.|++
T Consensus        68 ~l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~--~~Yv~~~~V~~Vc~~s~~vW~di~~~~~r~FIk  145 (213)
T 3dlm_A           68 KLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGY--ASYVTQSELYPICRPLKKTWEDIEDISCRDFIE  145 (213)
T ss_dssp             GCCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTSC--EEEECGGGEEEBSSCCSSGGGGCSCHHHHHHHH
T ss_pred             EEeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCCC--cceecCceEEEEEEcccchhhhcCcchhHHHHH
Confidence            47899999999854 2346999999977653  457899999766  455544444322     111223   3578888


Q ss_pred             hhc
Q psy9276         335 MFF  337 (583)
Q Consensus       335 ~~~  337 (583)
                      +|+
T Consensus       146 ~YL  148 (213)
T 3dlm_A          146 EYV  148 (213)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            885

>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1

Probab=83.16  E-value=1.4  Score=41.45  Aligned_cols=48  Identities=23%  Similarity=0.333  Sum_probs=35.8

Q ss_pred             cCCCEEEEEecCCCCcce-eeEEEEEeCCCCeeEEEecCCCCceeeecCccc
Q psy9276         268 VVGTKVTARVRSPQDGLF-TGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEV  318 (583)
Q Consensus       268 ~VG~kV~Arl~~~~~gL~-~G~Vlavd~~~~~YrV~Fdr~~lgv~~VpD~ev  318 (583)
                      .+|.+|+|+-.  .++-| .|+|..+ ..++.|.|.||-..--+...+|+-|
T Consensus        10 ~iG~rVfArWs--d~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k~v~~~divv   58 (156)
T 1ssf_A           10 FVGLRVVAKWS--SNGYFYSGKITRD-VGAGKYKLLFDDGYECDVLGKDILL   58 (156)
T ss_dssp             STTCEEEECSS--CSSEEEEEEEEEC-CTTTEEEEECTTSCEEEEETTTEEE
T ss_pred             hhccEEEEEcC--CCCcccccEEEEe-ccCCEEEEEEcCCCeeEeeccceEE
Confidence            48999999865  45655 9999996 6788999999987643344355543

>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A

Probab=82.77  E-value=2.1  Score=38.85  Aligned_cols=37  Identities=24%  Similarity=0.499  Sum_probs=31.0

Q ss_pred             cCCCEEEEEecCCCC-cceeeEEEEEeCCCCeeEEEecCCC
Q psy9276         268 VVGTKVTARVRSPQD-GLFTGVVDAYDTSNNTYRITFDRQG  307 (583)
Q Consensus       268 ~VG~kV~Arl~~~~~-gL~~G~Vlavd~~~~~YrV~Fdr~~  307 (583)
                      .+|.+|+|+..  .+ ..|.|+|.. +..++.|+|.||-..
T Consensus         6 ~~G~rV~AkWs--dn~~yYpG~V~~-~~~~~ky~V~FdDg~   43 (123)
T 2g3r_A            6 FVGLRVVAKWS--SNGYFYSGKITR-DVGAGKYKLLFDDGY   43 (123)
T ss_dssp             CTTCEEEEECT--TTCCEEEEEEEE-EEETTEEEEEETTSC
T ss_pred             ccceEEEEEec--cCCcCcccEEEE-eccCCeEEEEEcCCC
Confidence            38999999975  46 489999998 477889999999765

>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*

Probab=82.07  E-value=1.4  Score=39.32  Aligned_cols=59  Identities=17%  Similarity=0.239  Sum_probs=42.3

Q ss_pred             CCccccCCCEEEEEecCCCC--cceeeEEEEEeCCCC-------eeEEEecCCCCc-eeeecCcccccC
Q psy9276         263 IPIQLVVGTKVTARVRSPQD--GLFTGVVDAYDTSNN-------TYRITFDRQGLG-TQSIPDYEVLSN  321 (583)
Q Consensus       263 IP~PL~VG~kV~Arl~~~~~--gL~~G~Vlavd~~~~-------~YrV~Fdr~~lg-v~~VpD~evms~  321 (583)
                      ....+.+|.+|+++|+.+..  -||.+.|+.+....+       .|.|-|.-=.-. -+.||...|+..
T Consensus        16 ~k~~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drllk~   84 (110)
T 3oa6_A           16 MKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRD   84 (110)
T ss_dssp             --CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEEEC
T ss_pred             CCcccCCCCEEEEEecCCCCCcccEEEEEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhhhcC
Confidence            34679999999999977543  489999998864322       499999633322 478888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	583
d1mhna_	59	Survival motor neuron protein 1, smn {Human (Homo	91.13
d2qqra1	59	Jumonji domain-containing protein 2A {Human (Homo	90.63
d2d9ta1	60	Tudor domain-containing protein 3, TDRD3 {Mouse (M	89.89

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=0.38  Score=35.93  Aligned_cols=52  Identities=25%  Similarity=0.408  Sum_probs=40.9

Q ss_pred             cccCCCEEEEEecCCCCc-ceeeEEEEEeCCCCeeEEEecCCCCc-eeeecCcccccC
Q psy9276         266 QLVVGTKVTARVRSPQDG-LFTGVVDAYDTSNNTYRITFDRQGLG-TQSIPDYEVLSN  321 (583)
Q Consensus       266 PL~VG~kV~Arl~~~~~g-L~~G~Vlavd~~~~~YrV~Fdr~~lg-v~~VpD~evms~  321 (583)
                      ...||+.+.|+...  || .|.|+|.+++..++.|.|.|.  +.| ++.|+=.++.|.
T Consensus         3 ~wkvG~~C~A~~s~--Dg~wYRA~I~~v~~~~~~~~V~fv--DYGn~e~V~~~~l~~~   56 (59)
T d1mhna_           3 QWKVGDKCSAIWSE--DGCIYPATIASIDFKRETCVVVYT--GYGNREEQNLSDLLSP   56 (59)
T ss_dssp             CCCTTCEEEEECTT--TSCEEEEEEEEEETTTTEEEEEET--TTTEEEEEEGGGCBCT
T ss_pred             cCCcCCEEEEEECC--CCCEEEEEEEEEcCCCCEEEEEEE--eCCCEEEEEHHHCcCC
Confidence            35799999998743  55 899999999988889999997  444 677776666543

>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Jumonji domain-containing protein 2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.63  E-value=0.13  Score=39.33  Aligned_cols=38  Identities=21%  Similarity=0.411  Sum_probs=31.6

Q ss_pred             ccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCCC
Q psy9276         267 LVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQG  307 (583)
Q Consensus       267 L~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~~  307 (583)
                      +.+||+|+|.|..  .-.|.+.|..+..+ .-|-|.||-..
T Consensus         3 i~~Gq~VI~KhkN--gryY~c~V~~~~~q-tfyeV~FdDgS   40 (59)
T d2qqra1           3 ITAGQKVISKHKN--GRFYQCEVVRLTTE-TFYEVNFDDGS   40 (59)
T ss_dssp             CCTTCEEEEECTT--SSEEEEEEEEEEEE-EEEEEEETTSC
T ss_pred             cccccEEEEEccC--CcEEEEEEEEeeeE-EEEEEEecCCC
Confidence            6899999999974  46899999988654 68999998765

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.89  E-value=0.43  Score=35.58  Aligned_cols=54  Identities=15%  Similarity=0.167  Sum_probs=40.4

Q ss_pred             ccCCCEEEEEecCCCCcceeeEEEEEeCCCCeeEEEecCCCCceeeecCcccccCC
Q psy9276         267 LVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSND  322 (583)
Q Consensus       267 L~VG~kV~Arl~~~~~gL~~G~Vlavd~~~~~YrV~Fdr~~lgv~~VpD~evms~~  322 (583)
                      ..||+.+.|+... ....|.|.|++++..++.|.|.|.-=| ..+.||=.++.++.
T Consensus         3 wkvG~~c~A~~~~-D~~wYRA~I~~i~~~~~~~~V~fvDYG-n~e~v~~~~lr~l~   56 (60)
T d2d9ta1           3 WKPGDECFALYWE-DNKFYRAEVEALHSSGMTAVVKFTDYG-NYEEVLLSNIKPVQ   56 (60)
T ss_dssp             CCTTCEEEEECTT-TCCEEEEEEEEECSSSSEEEEEETTTT-EEEEEEGGGEEECC
T ss_pred             cCcCCEEEEEECC-CCCEEEEEEEEEcCCCCEEEEEEECCC-CEEEEcHHHcCcCC
Confidence            3699999998643 235799999999988889999998433 16777666665553