Psyllid ID: psy928

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MMLKKSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQSSIDSMEFN
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHccEEEcc
Coil and Loop (DISEMBL)
MMLKKSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKtnntlivpsdanniaSMVTQssidsmefn
Flexible Loop (DISEMBL)
MMLKKSPREAVATALLSVAEARAKSLDLVAKALetkdgrsaasLSIAEQYVKAFNELAKTNNTLIVPSDANNIASmvtqssidsmefn
Low Complexity Region (SEG)
MMLKKSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQSSIDSMEFN
Disordered region (IsUnstruct)
**************************DLVA*************LSIAEQYVKAFNELAKTNNTLIV**********************
Disordered Region (DISOPRED)
*****SP***VATALLSVAEARAKSLDLVA**********AASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQSSIDSMEF*
Disordered Region (DISEMBL)
**********VATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQSSIDSMEFN
Disordered Region (DISPRO)
*MLKKSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQSSIDSMEFN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMLKKSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQSSIDSMEFN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
Q9UJZ1	356	Stomatin-like protein 2 O	yes	N/A	0.625	0.154	0.472	2e-08
Q32LL2	356	Stomatin-like protein 2 O	yes	N/A	0.625	0.154	0.472	2e-08
Q99JB2	353	Stomatin-like protein 2 O	yes	N/A	0.625	0.155	0.472	2e-08
Q4FZT0	353	Stomatin-like protein 2 O	yes	N/A	0.625	0.155	0.472	2e-08
O60121	354	Uncharacterized protein C	yes	N/A	0.806	0.200	0.361	2e-05

>sp|Q9UJZ1|STML2_HUMAN Stomatin-like protein 2 OS=Homo sapiens GN=STOML2 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 43/55 (78%)

Query: 26  LDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQS 80
           + ++A AL   +G +AASL++AEQYV AF++LAK +NT+++PS+  ++ SMV Q+
Sbjct: 258 IRILAAALTQHNGDAAASLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQA 312

Homo sapiens (taxid: 9606)

>sp|Q32LL2|STML2_BOVIN Stomatin-like protein 2 OS=Bos taurus GN=STOML2 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 43/55 (78%)

Query: 26  LDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQS 80
           + ++A AL   +G +AASL++AEQYV AF++LAK +NT+++PS+  ++ SMV Q+
Sbjct: 258 IRILAAALTQHNGDAAASLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQA 312

Bos taurus (taxid: 9913)

>sp|Q99JB2|STML2_MOUSE Stomatin-like protein 2 OS=Mus musculus GN=Stoml2 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 44/55 (80%)

Query: 26  LDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQS 80
           + ++A AL   +G +AASL++AEQYV AF++LAK +NT+++PS+ +++ SMV Q+
Sbjct: 258 IRILAGALTQHNGDAAASLTVAEQYVSAFSKLAKDSNTVLLPSNPSDVTSMVAQA 312

Mus musculus (taxid: 10090)

>sp|Q4FZT0|STML2_RAT Stomatin-like protein 2 OS=Rattus norvegicus GN=Stoml2 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 44/55 (80%)

Query: 26  LDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQS 80
           + ++A AL   +G +AASL++AEQYV AF++LAK +NT+++PS+ +++ SMV Q+
Sbjct: 258 IRILAGALTQHNGDAAASLTVAEQYVSAFSKLAKDSNTVLLPSNPSDVTSMVAQA 312

Rattus norvegicus (taxid: 10116)

>sp|O60121|YH77_SCHPO Uncharacterized protein C16G5.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.07c PE=3 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 10  AVATALLSVAEARAKSLDLVAKALETKD-GRSAASLSIAEQYVKAFNELAKTNNTLIVPS 68
           A A A+   A A A  + ++A +++ ++ G  A SL IA+QY+  F +LAK +N++IVP+
Sbjct: 257 AEAQAIREKASATASGIAVLADSIKKQEHGLEAVSLYIAQQYITNFGKLAKASNSMIVPA 316

Query: 69  DANNIASMVTQS 80
             ++++ MV Q+
Sbjct: 317 STSDVSGMVAQA 328

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
328783826	394	PREDICTED: stomatin-like protein 2-like	0.806	0.180	0.619	2e-16
380018763	394	PREDICTED: stomatin-like protein 2-like	0.806	0.180	0.619	2e-16
340729542	389	PREDICTED: stomatin-like protein 2-like	0.806	0.182	0.619	2e-16
350411541	392	PREDICTED: stomatin-like protein 2-like	0.806	0.181	0.619	3e-16
242015766	263	hypothetical protein Phum_PHUM388550 [Pe	0.784	0.262	0.521	3e-15
321478934	359	hypothetical protein DAPPUDRAFT_299792 [	0.784	0.192	0.594	3e-14
389612572	398	similar to CG2970, partial [Papilio xuth	0.784	0.173	0.550	6e-14
193594147	342	PREDICTED: stomatin-like protein 2-like	0.784	0.201	0.565	7e-14
357609159	408	hypothetical protein KGM_00459 [Danaus p	0.784	0.169	0.521	2e-13
449669321	363	PREDICTED: stomatin-like protein 2-like	0.784	0.190	0.521	2e-13

>gi|328783826|ref|XP_395784.2| PREDICTED: stomatin-like protein 2-like isoform 1 [Apis mellifera]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 60/71 (84%)

Query: 10  AVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSD 69
             ATAL+++AEARAKSL LVA AL   D ++AA+ SIAEQYVKAFN+LAK NNTLI+PS+
Sbjct: 266 GTATALVAIAEARAKSLKLVAGALNLTDAKNAAAYSIAEQYVKAFNKLAKVNNTLILPSN 325

Query: 70  ANNIASMVTQS 80
            ++++++VTQ+
Sbjct: 326 VSDVSALVTQA 336

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018763|ref|XP_003693292.1| PREDICTED: stomatin-like protein 2-like [Apis florea]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 60/71 (84%)

Query: 10  AVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSD 69
             ATAL+++AEARAKSL LVA AL   D ++AA+ SIAEQYVKAFN+LAK NNTLI+PS+
Sbjct: 266 GTATALVAIAEARAKSLKLVAGALNLTDAKNAAAYSIAEQYVKAFNKLAKVNNTLILPSN 325

Query: 70  ANNIASMVTQS 80
            ++++++VTQ+
Sbjct: 326 VSDVSALVTQA 336

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729542|ref|XP_003403059.1| PREDICTED: stomatin-like protein 2-like [Bombus terrestris]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 59/71 (83%)

Query: 10  AVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSD 69
             A AL+++AEARAKSL LVA AL   D ++AA+ SIAEQYVKAFN+LAK NNTLI+PS+
Sbjct: 261 GTAQALVAIAEARAKSLKLVANALNITDAKNAAAYSIAEQYVKAFNKLAKVNNTLILPSN 320

Query: 70  ANNIASMVTQS 80
            ++++S+VTQ+
Sbjct: 321 VSDVSSLVTQA 331

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411541|ref|XP_003489382.1| PREDICTED: stomatin-like protein 2-like [Bombus impatiens]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 59/71 (83%)

Query: 10  AVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSD 69
             A AL+++AEARAKSL LVA AL   D ++AA+ SIAEQYVKAFN+LAK NNTLI+PS+
Sbjct: 264 GTAQALVAIAEARAKSLKLVANALNMTDAKNAAAYSIAEQYVKAFNKLAKVNNTLILPSN 323

Query: 70  ANNIASMVTQS 80
            ++++S+VTQ+
Sbjct: 324 VSDVSSLVTQA 334

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015766|ref|XP_002428518.1| hypothetical protein Phum_PHUM388550 [Pediculus humanus corporis] gi|212513152|gb|EEB15780.1| hypothetical protein Phum_PHUM388550 [Pediculus humanus corporis]

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 60/69 (86%)

Query: 12  ATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDAN 71
           ATALL++AEA+A+ L+++AK+L+  DG++AA+L++A+QYV AFN+LA+  NTLI+PS+ N
Sbjct: 148 ATALLAIAEAKARGLEVIAKSLQCPDGKNAAALNVAQQYVSAFNQLAQKGNTLIIPSNVN 207

Query: 72  NIASMVTQS 80
           +++ +V Q+
Sbjct: 208 DVSQVVAQA 216

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321478934|gb|EFX89890.1| hypothetical protein DAPPUDRAFT_299792 [Daphnia pulex]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 54/69 (78%)

Query: 12  ATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDAN 71
           A  LLS A+ARAKSL+L++ ALE K G +AASL++AE YV AF +LAKTNNTLI+P+  N
Sbjct: 244 AQGLLSRAQARAKSLELLSAALENKHGMNAASLNVAELYVAAFQQLAKTNNTLILPATCN 303

Query: 72  NIASMVTQS 80
           ++  MV Q+
Sbjct: 304 DVTQMVGQA 312

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389612572|dbj|BAM19716.1| similar to CG2970, partial [Papilio xuthus]

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 58/69 (84%)

Query: 12  ATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDAN 71
           A A+++VA+ARA+ L L+A AL  +D + AASL++AEQYV AFN+LA+TNNTLI+P++A 
Sbjct: 253 AQAMIAVADARARGLKLLAGALAQQDSKYAASLTLAEQYVAAFNKLARTNNTLILPANAG 312

Query: 72  NIASMVTQS 80
           +++S+V Q+
Sbjct: 313 DVSSLVGQA 321

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193594147|ref|XP_001944404.1| PREDICTED: stomatin-like protein 2-like [Acyrthosiphon pisum]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 57/69 (82%)

Query: 12  ATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDAN 71
           A ALL+VAEA+AK + L+A AL+  DG +AASL +AE YV+AF +LAK+ NT+I+PS+ +
Sbjct: 252 ANALLAVAEAKAKGIRLIADALKQTDGYNAASLKVAESYVEAFGKLAKSTNTVIIPSNTS 311

Query: 72  NIASMVTQS 80
           +++SMVTQ+
Sbjct: 312 DVSSMVTQA 320

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357609159|gb|EHJ66325.1| hypothetical protein KGM_00459 [Danaus plexippus]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 57/69 (82%)

Query: 12  ATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDAN 71
           A A+L+VA+ARAK L ++ +AL   D + AA+L++AEQYV AFN+LA+TNNTLI+P++A 
Sbjct: 254 AQAMLAVADARAKGLTIIGQALAQTDSKHAAALTLAEQYVSAFNKLARTNNTLILPANAG 313

Query: 72  NIASMVTQS 80
           +++++V Q+
Sbjct: 314 DVSNLVAQA 322

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449669321|ref|XP_002167831.2| PREDICTED: stomatin-like protein 2-like [Hydra magnipapillata]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 58/69 (84%)

Query: 12  ATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDAN 71
           A ALL+ A+ARA+++ +++ AL    G  AA+LS+AEQY++AF++LAKT+NT+I+P++AN
Sbjct: 227 ANALLATAKARAEAITMISNALNQASGNQAAALSVAEQYIQAFSQLAKTSNTVIIPANAN 286

Query: 72  NIASMVTQS 80
           N++SMV Q+
Sbjct: 287 NVSSMVAQA 295

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
ZFIN|ZDB-GENE-040426-1139	355	stoml2 "stomatin (EPB72)-like	0.784	0.194	0.536	1.6e-14
FB|FBgn0034936	369	CG2970 [Drosophila melanogaste	0.784	0.186	0.521	6.5e-14
UNIPROTKB|B4E1K7	311	STOML2 "cDNA FLJ61039, highly	0.784	0.221	0.463	3.7e-12
UNIPROTKB|A5PJA6	356	STOML2 "Stomatin (EPB72)-like	0.784	0.193	0.463	5.7e-12
UNIPROTKB|Q32LL2	356	STOML2 "Stomatin-like protein	0.784	0.193	0.463	5.7e-12
UNIPROTKB|E2RKS8	356	PIGO "Uncharacterized protein"	0.784	0.193	0.463	5.7e-12
UNIPROTKB|Q9UJZ1	356	STOML2 "Stomatin-like protein	0.784	0.193	0.463	5.7e-12
UNIPROTKB|F1SIH5	356	STOML2 "Uncharacterized protei	0.784	0.193	0.463	5.7e-12
MGI|MGI:1913842	353	Stoml2 "stomatin (Epb7.2)-like	0.784	0.195	0.463	7.2e-12
RGD|1308285	353	Stoml2 "stomatin (Epb7.2)-like	0.784	0.195	0.463	7.2e-12

ZFIN|ZDB-GENE-040426-1139 stoml2 "stomatin (EPB72)-like 2" [Danio rerio (taxid:7955)]

 Score = 190 (71.9 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 37/69 (53%), Positives = 59/69 (85%)

Query:    12 ATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDAN 71
             A A+L+ AEA+AK++ L+++AL  ++G +AASLS+AEQYV AF++LAK +NT+++PS+  
Sbjct:   249 ANAVLAKAEAKAKAIRLLSEALTQQNGNAAASLSVAEQYVSAFSKLAKESNTILLPSNTG 308

Query:    72 NIASMVTQS 80
             +I+SMVTQ+
Sbjct:   309 DISSMVTQA 317

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0034936 CG2970 [Drosophila melanogaster (taxid:7227)]

 Score = 185 (70.2 bits), Expect = 6.5e-14, P = 6.5e-14
 Identities = 36/69 (52%), Positives = 55/69 (79%)

Query:    12 ATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDAN 71
             A A+++VA+ARA+SL  +AK+L   DG++AASL++AEQY+ AF +LAKTNNT+I+PS+  
Sbjct:   252 AAAIIAVADARARSLLAIAKSLSHLDGQNAASLTLAEQYIGAFKKLAKTNNTMILPSNPG 311

Query:    72 NIASMVTQS 80
             ++   V Q+
Sbjct:   312 DVNGFVAQA 320

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|B4E1K7 STOML2 "cDNA FLJ61039, highly similar to Stomatin-like protein 2" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 32/69 (46%), Positives = 56/69 (81%)

Query:    12 ATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDAN 71
             A+A+L+ A+A+A+++ ++A AL   +G +AASL++AEQYV AF++LAK +NT+++PS+  
Sbjct:   199 ASAVLAKAKAKAEAIRILAAALTQHNGDAAASLTVAEQYVSAFSKLAKDSNTILLPSNPG 258

Query:    72 NIASMVTQS 80
             ++ SMV Q+
Sbjct:   259 DVTSMVAQA 267

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|A5PJA6 STOML2 "Stomatin (EPB72)-like 2" [Bos taurus (taxid:9913)]

 Score = 167 (63.8 bits), Expect = 5.7e-12, P = 5.7e-12
 Identities = 32/69 (46%), Positives = 56/69 (81%)

Query:    12 ATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDAN 71
             A+A+L+ A+A+A+++ ++A AL   +G +AASL++AEQYV AF++LAK +NT+++PS+  
Sbjct:   244 ASAVLAKAKAKAEAIRILAAALTQHNGDAAASLTVAEQYVSAFSKLAKDSNTILLPSNPG 303

Query:    72 NIASMVTQS 80
             ++ SMV Q+
Sbjct:   304 DVTSMVAQA 312

GO:0008180 "signalosome" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|Q32LL2 STOML2 "Stomatin-like protein 2" [Bos taurus (taxid:9913)]

 Score = 167 (63.8 bits), Expect = 5.7e-12, P = 5.7e-12
 Identities = 32/69 (46%), Positives = 56/69 (81%)

Query:    12 ATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDAN 71
             A+A+L+ A+A+A+++ ++A AL   +G +AASL++AEQYV AF++LAK +NT+++PS+  
Sbjct:   244 ASAVLAKAKAKAEAIRILAAALTQHNGDAAASLTVAEQYVSAFSKLAKDSNTILLPSNPG 303

Query:    72 NIASMVTQS 80
             ++ SMV Q+
Sbjct:   304 DVTSMVAQA 312

GO:0042101 "T cell receptor complex" evidence=ISS

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0015629 "actin cytoskeleton" evidence=ISS

GO:0005758 "mitochondrial intermembrane space" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0001772 "immunological synapse" evidence=ISS

GO:1990046 "stress-induced mitochondrial fusion" evidence=ISS

GO:0035710 "CD4-positive, alpha-beta T cell activation" evidence=ISS

GO:0034982 "mitochondrial protein processing" evidence=ISS

GO:0032623 "interleukin-2 production" evidence=ISS

GO:0010876 "lipid localization" evidence=ISS

GO:0045121 "membrane raft" evidence=ISS

GO:1901612 "cardiolipin binding" evidence=ISS

GO:1900210 "positive regulation of cardiolipin metabolic process" evidence=ISS

GO:0090297 "positive regulation of mitochondrial DNA replication" evidence=ISS

GO:0051259 "protein oligomerization" evidence=ISS

GO:0050852 "T cell receptor signaling pathway" evidence=ISS

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=ISS

GO:0010918 "positive regulation of mitochondrial membrane potential" evidence=ISS

GO:0007005 "mitochondrion organization" evidence=ISS

GO:0006874 "cellular calcium ion homeostasis" evidence=ISS

GO:0006851 "mitochondrial calcium ion transport" evidence=ISS

UNIPROTKB|E2RKS8 PIGO "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 167 (63.8 bits), Expect = 5.7e-12, P = 5.7e-12
 Identities = 32/69 (46%), Positives = 56/69 (81%)

Query:    12 ATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDAN 71
             A+A+L+ A+A+A+++ ++A AL   +G +AASL++AEQYV AF++LAK +NT+++PS+  
Sbjct:   244 ASAVLAKAKAKAEAIRILAAALTQHNGDAAASLTVAEQYVSAFSKLAKDSNTILLPSNPG 303

Query:    72 NIASMVTQS 80
             ++ SMV Q+
Sbjct:   304 DVTSMVAQA 312

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q9UJZ1 STOML2 "Stomatin-like protein 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 5.7e-12, P = 5.7e-12
 Identities = 32/69 (46%), Positives = 56/69 (81%)

Query:    12 ATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDAN 71
             A+A+L+ A+A+A+++ ++A AL   +G +AASL++AEQYV AF++LAK +NT+++PS+  
Sbjct:   244 ASAVLAKAKAKAEAIRILAAALTQHNGDAAASLTVAEQYVSAFSKLAKDSNTILLPSNPG 303

Query:    72 NIASMVTQS 80
             ++ SMV Q+
Sbjct:   304 DVTSMVAQA 312

GO:0010876 "lipid localization" evidence=ISS

GO:0032623 "interleukin-2 production" evidence=ISS

GO:0034982 "mitochondrial protein processing" evidence=ISS

GO:0035710 "CD4-positive, alpha-beta T cell activation" evidence=ISS

GO:1990046 "stress-induced mitochondrial fusion" evidence=ISS

GO:0008180 "signalosome" evidence=IDA

GO:0042101 "T cell receptor complex" evidence=IDA

GO:0045121 "membrane raft" evidence=IDA

GO:0050852 "T cell receptor signaling pathway" evidence=IMP

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006874 "cellular calcium ion homeostasis" evidence=IMP

GO:0006851 "mitochondrial calcium ion transport" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0051259 "protein oligomerization" evidence=IDA

GO:0010918 "positive regulation of mitochondrial membrane potential" evidence=IMP

GO:0007005 "mitochondrion organization" evidence=IMP

GO:1900210 "positive regulation of cardiolipin metabolic process" evidence=IMP

GO:0090297 "positive regulation of mitochondrial DNA replication" evidence=IMP

GO:1901612 "cardiolipin binding" evidence=IDA

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IMP

GO:0019897 "extrinsic to plasma membrane" evidence=IDA

GO:0001772 "immunological synapse" evidence=IDA

GO:0005102 "receptor binding" evidence=TAS

GO:0005856 "cytoskeleton" evidence=TAS

UNIPROTKB|F1SIH5 STOML2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 167 (63.8 bits), Expect = 5.7e-12, P = 5.7e-12
 Identities = 32/69 (46%), Positives = 56/69 (81%)

Query:    12 ATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDAN 71
             A+A+L+ A+A+A+++ ++A AL   +G +AASL++AEQYV AF++LAK +NT+++PS+  
Sbjct:   244 ASAVLAKAKAKAEAIRILAAALTQHNGDAAASLTVAEQYVSAFSKLAKDSNTILLPSNPG 303

Query:    72 NIASMVTQS 80
             ++ SMV Q+
Sbjct:   304 DVTSMVAQA 312

GO:0008180 "signalosome" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

MGI|MGI:1913842 Stoml2 "stomatin (Epb7.2)-like 2" [Mus musculus (taxid:10090)]

 Score = 166 (63.5 bits), Expect = 7.2e-12, P = 7.2e-12
 Identities = 32/69 (46%), Positives = 57/69 (82%)

Query:    12 ATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDAN 71
             A+A+L+ A+A+A+++ ++A AL   +G +AASL++AEQYV AF++LAK +NT+++PS+ +
Sbjct:   244 ASAVLAKAKAKAEAIRILAGALTQHNGDAAASLTVAEQYVSAFSKLAKDSNTVLLPSNPS 303

Query:    72 NIASMVTQS 80
             ++ SMV Q+
Sbjct:   304 DVTSMVAQA 312

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA

GO:0005758 "mitochondrial intermembrane space" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006851 "mitochondrial calcium ion transport" evidence=ISO

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0010918 "positive regulation of mitochondrial membrane potential" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=ISO

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=ISO

GO:0045121 "membrane raft" evidence=ISO

GO:0050852 "T cell receptor signaling pathway" evidence=ISO

GO:0051259 "protein oligomerization" evidence=ISO

GO:0090297 "positive regulation of mitochondrial DNA replication" evidence=ISO

GO:1900210 "positive regulation of cardiolipin metabolic process" evidence=ISO

GO:1901612 "cardiolipin binding" evidence=ISO

RGD|1308285 Stoml2 "stomatin (Epb7.2)-like 2" [Rattus norvegicus (taxid:10116)]

 Score = 166 (63.5 bits), Expect = 7.2e-12, P = 7.2e-12
 Identities = 32/69 (46%), Positives = 57/69 (82%)

Query:    12 ATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDAN 71
             A+A+L+ A+A+A+++ ++A AL   +G +AASL++AEQYV AF++LAK +NT+++PS+ +
Sbjct:   244 ASAVLAKAKAKAEAIRILAGALTQHNGDAAASLTVAEQYVSAFSKLAKDSNTVLLPSNPS 303

Query:    72 NIASMVTQS 80
             ++ SMV Q+
Sbjct:   304 DVTSMVAQA 312

GO:0001772 "immunological synapse" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO;ISS

GO:0005758 "mitochondrial intermembrane space" evidence=ISO;ISS

GO:0006851 "mitochondrial calcium ion transport" evidence=ISO;ISS

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO;ISS

GO:0007005 "mitochondrion organization" evidence=ISO;ISS

GO:0008180 "signalosome" evidence=IEA;ISO

GO:0010876 "lipid localization" evidence=ISS

GO:0010918 "positive regulation of mitochondrial membrane potential" evidence=ISO;ISS

GO:0015629 "actin cytoskeleton" evidence=ISO;ISS

GO:0016020 "membrane" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=ISO;ISS

GO:0032623 "interleukin-2 production" evidence=ISS

GO:0034982 "mitochondrial protein processing" evidence=ISS

GO:0035710 "CD4-positive, alpha-beta T cell activation" evidence=ISS

GO:0042101 "T cell receptor complex" evidence=ISO;ISS

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=ISO;ISS

GO:0045121 "membrane raft" evidence=ISO;ISS

GO:0050852 "T cell receptor signaling pathway" evidence=ISO;ISS

GO:0051259 "protein oligomerization" evidence=ISO;ISS

GO:0090297 "positive regulation of mitochondrial DNA replication" evidence=ISO;ISS

GO:1900210 "positive regulation of cardiolipin metabolic process" evidence=ISO;ISS

GO:1901612 "cardiolipin binding" evidence=ISO;ISS

GO:1990046 "stress-induced mitochondrial fusion" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
KOG2620|consensus	301		99.66
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	99.26
PRK11029	334	FtsH protease regulator HflC; Provisional	98.14
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	98.01
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	97.91
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	97.78
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	97.65
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	97.32
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	96.73
PRK10930	419	FtsH protease regulator HflK; Provisional	96.51
KOG3090|consensus	290		96.2
KOG2621|consensus	288		95.16
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	93.07
KOG2620|consensus	301		92.0
KOG3083|consensus	271		89.05
COG2268	548	Uncharacterized protein conserved in bacteria [Fun	88.41
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	87.83
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	86.25
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	83.87
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	83.33
PRK11029	334	FtsH protease regulator HflC; Provisional	82.15
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	80.22

>KOG2620|consensus

Probab=99.66  E-value=2.5e-16  Score=115.58  Aligned_cols=87  Identities=31%  Similarity=0.405  Sum_probs=81.6

Q ss_pred             cchhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHhhccCCeEEecCCchhHHHHHHHHH
Q psy928            2 MLKKSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQSS   81 (88)
Q Consensus         2 ~~~il~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~la~~~ntivlP~~~~~~~g~~~~~~   81 (88)
                      ++++..|.|++++++..|++++.++.++...+.+.+|.+|.+|.+++|||.+|+++++.+||+|+|++++++.+++++++
T Consensus       207 ~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~~~~g~~aasl~~a~qyIgaf~~lak~sntv~lP~~pg~v~~mvaQa~  286 (301)
T KOG2620|consen  207 RQRQNIADGEAEAILAFADAVAGTSAKLVMDLKQEGGVEAASLFDAEQYIGAFGKLAKKSNTVFLPHGPGDVRDMVAQAL  286 (301)
T ss_pred             HHHHHHHhhHHHHHHHHhhcccchHHHHHHHHHHhcchhhHHHHHHHHHHHhhhhhcccCceEEecCCCCcHHHHHHHHH
Confidence            57788889999999999999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcC
Q psy928           82 IDSMEFN   88 (88)
Q Consensus        82 ~~~~~~~   88 (88)
                      .+|+.++
T Consensus       287 ~~~~~~s  293 (301)
T KOG2620|consen  287 NGYKQLS  293 (301)
T ss_pred             HHHHhhh
Confidence            9998764

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.26  E-value=3.6e-11  Score=87.14  Aligned_cols=76  Identities=14%  Similarity=0.239  Sum_probs=54.7

Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHhhccCCe-EEecCCchhHHHHHHHH
Q psy928            5 KSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNT-LIVPSDANNIASMVTQS   80 (88)
Q Consensus         5 il~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~la~~~nt-ivlP~~~~~~~g~~~~~   80 (88)
                      +++|||+|++++..|++.++.+..+.++.....++++.+|++..+|+++++++++++|+ +|+|++..++.+++.++
T Consensus       185 ~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~~~~kviv~p~~~~~~~~~~~~~  261 (262)
T cd03407         185 RLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGRSSSTVVFRPHGPGGAQDIYAQI  261 (262)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhCCCCEEEecCCCccHHHHHHhc
Confidence            44455555555555555555555555554333456788899999999999999987765 89999999999988764

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=98.14  E-value=1.3e-05  Score=60.68  Aligned_cols=60  Identities=17%  Similarity=0.236  Sum_probs=48.5

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHhhccCC-eEEecCCc
Q psy928            6 SPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNN-TLIVPSDA   70 (88)
Q Consensus         6 l~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~la~~~n-tivlP~~~   70 (88)
                      +.|+|++++.+++|+|+|++++.+++++...     -.+....+|+++++++.++++ ++|+|.+.
T Consensus       260 ~~AeA~~~a~i~~aegeA~a~~~~~~a~~~~-----p~~~~~~~~lea~~~~~~~~~~~~vl~~~~  320 (334)
T PRK11029        260 TLAEAERQGRIMRGEGDAEAAKLFADAFSQD-----PDFYAFIRSLRAYENSFSGNQDVMVLSPDS  320 (334)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHhcCCCcEEEECCCh
Confidence            3477888888888999999999999998741     246678899999999998664 58899884

>TIGR01932 hflC HflC protein

Probab=98.01  E-value=2.5e-05  Score=58.36  Aligned_cols=59  Identities=19%  Similarity=0.197  Sum_probs=44.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHhhccCC-eEEecCCc
Q psy928            7 PREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNN-TLIVPSDA   70 (88)
Q Consensus         7 ~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~la~~~n-tivlP~~~   70 (88)
                      .|||++++.+.+|+|+|++++.+++++...  +   .+.--.+|+++++++.++++ ++|+|.+.
T Consensus       251 ~aeA~a~a~~~~Aegea~a~~~~~~a~~~~--p---~~~~~~~~le~~~~~~~~~~~~~vl~~~~  310 (317)
T TIGR01932       251 LSEAYRTARIIKGEGDAEAAKIYSDAYGKD--P---EFYSFWRSLEAYEKSFKDNQDEKVLSTDS  310 (317)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHccC--H---HHHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence            455667778888888888899888888742  2   33445799999999998776 58888773

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>TIGR01933 hflK HflK protein

Probab=97.91  E-value=6.6e-05  Score=54.08  Aligned_cols=60  Identities=5%  Similarity=0.112  Sum_probs=45.6

Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHhhccCCe-EEecCC
Q psy928            5 KSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNT-LIVPSD   69 (88)
Q Consensus         5 il~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~la~~~nt-ivlP~~   69 (88)
                      +..|||.+++++..|+|+|+++..+.++....  +   .+....+|+++++++.++.++ ++++.+
T Consensus       191 ~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~--p---~~~~~~~~le~~~~~~~~~~~~~~~~~~  251 (261)
T TIGR01933       191 IEEARGYKERRINRAKGDVARFTKLLAEYKKA--P---DVTRERLYLETMEKVLSNTRKVLLDDKK  251 (261)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhC--h---HHHHHHHHHHHHHHHHccCCeEEEECCC
Confidence            46777778888888888889988888888642  2   344567799999999876665 777655

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=0.00011  Score=53.62  Aligned_cols=69  Identities=29%  Similarity=0.441  Sum_probs=45.0

Q ss_pred             cchhhHHHHHHHHHHHHHHH----------HHHHHHHHhhcCcchhhHHHHHHHHHHHHHHhhccC--CeEEecCCchh-
Q psy928            6 SPREAVATALLSVAEARAKS----------LDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTN--NTLIVPSDANN-   72 (88)
Q Consensus         6 l~AegeAeai~~~AeA~Aea----------i~~i~~al~~~~g~~a~~l~la~qyi~al~~la~~~--ntivlP~~~~~-   72 (88)
                      ++|+|++++..+.++|.+++          ++.++++..   ..+++.+.+.++|++.+.+.++++  +++++|.+..+ 
T Consensus       205 ~~a~g~~~a~~i~aea~~~a~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~p~~~~~~  281 (291)
T COG0330         205 LRAEGEAEAAIILAEAEAEAEVIARAEADAAKIIAAALR---EAPAAPQALAQRYLEELLEIALAGNSKVVVVPNSAGGA  281 (291)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhhccHHHHHHHhhcc---cccchhHHHHHHHHHHHHHHhhCCCCeEEEecCCccch
Confidence            45555666666666666666          333333332   335567789999999999999874  34899998766 


Q ss_pred             HHHHH
Q psy928           73 IASMV   77 (88)
Q Consensus        73 ~~g~~   77 (88)
                      +.+++
T Consensus       282 ~~~~~  286 (291)
T COG0330         282 ILGLL  286 (291)
T ss_pred             hhhhh
Confidence            34443

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=97.65  E-value=0.00024  Score=49.42  Aligned_cols=63  Identities=19%  Similarity=0.249  Sum_probs=50.5

Q ss_pred             chhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHhhccCCe-EEecC
Q psy928            3 LKKSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNT-LIVPS   68 (88)
Q Consensus         3 ~~il~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~la~~~nt-ivlP~   68 (88)
                      +....|+.++++.+..|++++++....+++..+... +  ...++.+|++.++.++++.++ +++|.
T Consensus       151 ~~~~~A~~~~~a~i~~A~ge~~a~~~~aea~~~~~~-~--~~~~~~~~~e~~~~~~~~~~~~~~~~~  214 (215)
T cd03403         151 AKQAEAEREKRAKIIEAEGERQAAILLAEAAKQAAI-N--PAALQLRELETLEEIAKEAASTVVFPA  214 (215)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcc-C--HHHHHHHHHHHHHHHHhccCCeEEeeC
Confidence            445678999999999999999999999999876321 1  234688999999999999987 55554

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=97.32  E-value=0.00069  Score=48.01  Aligned_cols=47  Identities=17%  Similarity=0.087  Sum_probs=37.8

Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHH
Q psy928            5 KSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNE   56 (88)
Q Consensus         5 il~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~   56 (88)
                      +..|||+|++++++|+|+|+++++++++++..  +   .+....+|+++++.
T Consensus       194 ~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~--p---~~~~~~~~l~~~~~  240 (242)
T cd03405         194 VILAEAYREAQEIRGEGDAEAARIYAEAYGKD--P---EFYAFYRSLEAYRN  240 (242)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--H---HHHHHHHHHHHHHh
Confidence            56889999999999999999999999999752  2   34456788988874

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=96.73  E-value=0.0055  Score=44.16  Aligned_cols=48  Identities=13%  Similarity=0.240  Sum_probs=30.7

Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHh
Q psy928            5 KSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNEL   57 (88)
Q Consensus         5 il~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~l   57 (88)
                      +..|+|++++++..|+|++++++.+.++.+..  +   ...+...|+++|.++
T Consensus       218 ~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~~--~---~~~~~~~~~~~~~~~  265 (266)
T cd03404         218 IQEAEAYKEEVIAEAQGEAARFESLLAEYKKA--P---DVTRERLYLETMEEV  265 (266)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC--h---HHHHHHHHHHHHHHh
Confidence            34455555666666666666777777777641  2   234677799998875

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=96.51  E-value=0.012  Score=45.96  Aligned_cols=21  Identities=10%  Similarity=0.365  Sum_probs=15.8

Q ss_pred             HHHHHHHHHhhccCCeEEecC
Q psy928           48 EQYVKAFNELAKTNNTLIVPS   68 (88)
Q Consensus        48 ~qyi~al~~la~~~ntivlP~   68 (88)
                      .-|+|++.++..+.+.+|+..
T Consensus       325 RlYletme~vl~~~~kvivd~  345 (419)
T PRK10930        325 RLYIETMEKVLGHTRKVLVND  345 (419)
T ss_pred             HHHHHHHHHHHccCCEEEEeC
Confidence            459999999988766555533

>KOG3090|consensus

Probab=96.20  E-value=0.01  Score=43.68  Aligned_cols=59  Identities=24%  Similarity=0.313  Sum_probs=45.1

Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHh----hccCCeEEecCC
Q psy928            5 KSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNEL----AKTNNTLIVPSD   69 (88)
Q Consensus         5 il~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~l----a~~~ntivlP~~   69 (88)
                      +-+|+-+++..+..||++|++-++|++++++.  +.-    +..+-|++-.++    ++++|.++++++
T Consensus       211 VekA~qek~~~ivrAqGEaksAqliGeAi~nn--~~f----i~Lrki~aAr~IA~tia~S~NkvyL~~~  273 (290)
T KOG3090|consen  211 VEKAEQEKQSAIVRAQGEAKSAQLIGEAIKNN--PAF----ITLRKIEAAREIAQTIASSANKVYLSSD  273 (290)
T ss_pred             hHHHHHhhhhhhhhhccchHHHHHHHHHHhCC--ccc----eeehhHHHHHHHHHHHhcCCCeEEeccc
Confidence            34788889999999999999999999999973  122    344556665544    567788999887

>KOG2621|consensus

Probab=95.16  E-value=0.048  Score=40.89  Aligned_cols=63  Identities=22%  Similarity=0.342  Sum_probs=46.8

Q ss_pred             hhcchhhHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhhHHHHHHHHHHHHHHhhccCC-eEEecCCc
Q psy928            4 KKSPREAVATALLSVAEARAKSLDLVAKALET-KDGRSAASLSIAEQYVKAFNELAKTNN-TLIVPSDA   70 (88)
Q Consensus         4 ~il~AegeAeai~~~AeA~Aeai~~i~~al~~-~~g~~a~~l~la~qyi~al~~la~~~n-tivlP~~~   70 (88)
                      ...+|..||.+..+.||++..+.+.+.++-.. ..++.+++|    +|+..+..++.+.| |+++|-..
T Consensus       210 aeAeA~reA~Akviaaege~~as~al~~aa~v~~~sp~alqL----ryLqtl~sia~e~~~tivfP~p~  274 (288)
T KOG2621|consen  210 AEAEATREARAKVIAAEGEKKASEALKEAADVISESPIALQL----RYLQTLNSIAAEKNSTIVFPLPI  274 (288)
T ss_pred             chhhhhhhhhhhHHHHHhhhHHHHHHHHhhccccCCchhhhh----hhhhcchhhhcCCCCCcccCCCH
Confidence            34556667888889999999888887776543 244566655    89999999988775 69999553

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=93.07  E-value=0.13  Score=37.32  Aligned_cols=31  Identities=23%  Similarity=0.097  Sum_probs=21.6

Q ss_pred             hhcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy928            4 KKSPREAVATALLSVAEARAKSLDLVAKALE   34 (88)
Q Consensus         4 ~il~AegeAeai~~~AeA~Aeai~~i~~al~   34 (88)
                      .|.+|+|++++.++.|+|.|++....+++..
T Consensus       173 ~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~  203 (262)
T cd03407         173 DIKAAEADAEAKRLQGVGAAEQRQAIADGLR  203 (262)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            4566777777777777777777777666654

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>KOG2620|consensus

Probab=92.00  E-value=0.27  Score=36.92  Aligned_cols=15  Identities=7%  Similarity=-0.015  Sum_probs=9.2

Q ss_pred             HHHHHHHHHhhccCC
Q psy928           48 EQYVKAFNELAKTNN   62 (88)
Q Consensus        48 ~qyi~al~~la~~~n   62 (88)
                      .+|.++.+.++..++
T Consensus       247 asl~~a~qyIgaf~~  261 (301)
T KOG2620|consen  247 ASLFDAEQYIGAFGK  261 (301)
T ss_pred             HHHHHHHHHHHhhhh
Confidence            566666666655443

>KOG3083|consensus

Probab=89.05  E-value=0.35  Score=35.64  Aligned_cols=59  Identities=24%  Similarity=0.335  Sum_probs=41.8

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHH----HhhccCCeEEecCC
Q psy928            6 SPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFN----ELAKTNNTLIVPSD   69 (88)
Q Consensus         6 l~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~----~la~~~ntivlP~~   69 (88)
                      -+||-++++-++.||+++++-++|++++...| .--    +-.+-+|+-+    .|+.+.|..++|+.
T Consensus       201 eKAeQqk~aavIsAEGds~aA~li~~sla~aG-~gL----ielrrlEAa~dia~~Ls~s~nv~YLp~g  263 (271)
T KOG3083|consen  201 EKAEQQKKAAVISAEGDSKAAELIANSLATAG-DGL----IELRRLEAAEDIAYQLSRSRNVTYLPAG  263 (271)
T ss_pred             HHHhhhhhhheeecccchHHHHHHHHHHhhcC-Cce----eeehhhhhHHHHHHHHhcCCCceeccCC
Confidence            45777778888899999999999999998753 112    2224455544    45667788899955

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.41  E-value=1.4  Score=35.95  Aligned_cols=54  Identities=24%  Similarity=0.281  Sum_probs=37.1

Q ss_pred             hhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHhhc
Q psy928            4 KKSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAK   59 (88)
Q Consensus         4 ~il~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~la~   59 (88)
                      ++.+..++|++++.+++|+|++++.+++++...+...+..  +...-+++|..+++
T Consensus       418 ~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~a~--~~~~~vq~Lp~~~~  471 (548)
T COG2268         418 QAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAAE--LFKALVQALPEVAE  471 (548)
T ss_pred             HHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHHHH
Confidence            4556778899999999999999999999998743221211  12244566665554

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=87.83  E-value=0.86  Score=32.71  Aligned_cols=31  Identities=23%  Similarity=0.173  Sum_probs=21.0

Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy928            5 KSPREAVATALLSVAEARAKSLDLVAKALET   35 (88)
Q Consensus         5 il~AegeAeai~~~AeA~Aeai~~i~~al~~   35 (88)
                      +.+||+++++++..|+++|+++...+++..+
T Consensus       196 ~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~  226 (266)
T cd03404         196 INEAEAYANEVVPKARGEAARIIQEAEAYKE  226 (266)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            4556666677777777777777777666554

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=86.25  E-value=2.8  Score=30.40  Aligned_cols=32  Identities=25%  Similarity=0.155  Sum_probs=27.9

Q ss_pred             hhcchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy928            4 KKSPREAVATALLSVAEARAKSLDLVAKALET   35 (88)
Q Consensus         4 ~il~AegeAeai~~~AeA~Aeai~~i~~al~~   35 (88)
                      .|++|||++++.++.|+|++++-.+++++...
T Consensus       192 ~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~  223 (291)
T COG0330         192 EILEAEGEAQAAILRAEGEAEAAIILAEAEAE  223 (291)
T ss_pred             HHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence            57899999999999999999999999888753

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=83.87  E-value=2.2  Score=30.03  Aligned_cols=29  Identities=21%  Similarity=0.069  Sum_probs=18.1

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy928            6 SPREAVATALLSVAEARAKSLDLVAKALE   34 (88)
Q Consensus         6 l~AegeAeai~~~AeA~Aeai~~i~~al~   34 (88)
                      .+|||++++.+..++|+++++...+++..
T Consensus       173 ~~ae~~~~a~~~~aea~~~~~~~~Aea~a  201 (242)
T cd03405         173 FRAEGEEEAERIRADADRERTVILAEAYR  201 (242)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666666666666666555544

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>TIGR01933 hflK HflK protein

Probab=83.33  E-value=2  Score=30.84  Aligned_cols=30  Identities=20%  Similarity=0.175  Sum_probs=18.4

Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy928            5 KSPREAVATALLSVAEARAKSLDLVAKALE   34 (88)
Q Consensus         5 il~AegeAeai~~~AeA~Aeai~~i~~al~   34 (88)
                      +++|||+++.++..|+++++.+...+++..
T Consensus       169 ~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~  198 (261)
T TIGR01933       169 INEAEAYANEVVPKARGDAQRIIEEARGYK  198 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666666666555555443

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=82.15  E-value=4  Score=31.13  Aligned_cols=30  Identities=17%  Similarity=0.006  Sum_probs=23.2

Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy928            5 KSPREAVATALLSVAEARAKSLDLVAKALE   34 (88)
Q Consensus         5 il~AegeAeai~~~AeA~Aeai~~i~~al~   34 (88)
                      +++|||++++..+.++|+.++.+..+++-.
T Consensus       237 ~~~aege~~a~~~~a~A~~e~~~~~AeA~~  266 (334)
T PRK11029        237 RHRSQGQEEAEKLRATADYEVTRTLAEAER  266 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            567888888888888888888777777654

>TIGR01932 hflC HflC protein

Probab=80.22  E-value=4.9  Score=30.07  Aligned_cols=30  Identities=10%  Similarity=0.058  Sum_probs=23.6

Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy928            5 KSPREAVATALLSVAEARAKSLDLVAKALE   34 (88)
Q Consensus         5 il~AegeAeai~~~AeA~Aeai~~i~~al~   34 (88)
                      ..++||++++..+.++|++++...++++-.
T Consensus       227 ~~r~ege~~a~~i~a~A~~e~~~~~aeA~a  256 (317)
T TIGR01932       227 MHRSQGEEKAEEILGKAEYEVRKILSEAYR  256 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788888888888888888888877754

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	88
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.9 bits (87), Expect = 1e-04
 Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 24/103 (23%)

Query: 1   MMLKKSPREAVAT---------ALLSVAEARAKSLDLV-AKALETKDGRSAASLSIAEQY 50
              +  PRE + T           +    A   +   V    L T    S   L  AE  
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 51  VKAFNELAKTNNTLIVPSDANNIASMVTQ------SSIDSMEF 87
            K F+ L+      + P  A +I +++           D M  
Sbjct: 373 -KMFDRLS------VFPPSA-HIPTILLSLIWFDVIKSDVMVV 407

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	97.46

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}

Probab=97.46  E-value=7e-05  Score=50.55  Aligned_cols=57  Identities=16%  Similarity=0.242  Sum_probs=35.9

Q ss_pred             chhcchhhHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhhHHHHHHHHHHHHHHhhccCCe
Q psy928            3 LKKSPREAVATALLSVAEARAKSLDLVAKALET-KDGRSAASLSIAEQYVKAFNELAKTNNT   63 (88)
Q Consensus         3 ~~il~AegeAeai~~~AeA~Aeai~~i~~al~~-~~g~~a~~l~la~qyi~al~~la~~~nt   63 (88)
                      ++..+||.++++.+..|+|++++.+.++++... ..++.+    |..+||+++.++++++|+
T Consensus       123 ~~~~~Aere~~A~i~~Aege~~a~~~~a~a~~~~~~~~~~----l~lr~le~~~~ia~~~~~  180 (188)
T 3bk6_A          123 ARQAEAERERRARITLAEAERQAAEKLREAAEIISEHPMA----LQLRTLQTISDVAGDKSN  180 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTH----HHHHHTTC----------
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCHHH----HHHHHHHHHHHHhcCCCC
Confidence            445678899999999999999999999988643 122344    455899999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00