Psyllid ID: psy9337

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MKQASTKYPYQANGSGQQNVSLSDRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQIINHFPNHYELTNTPTARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELAARRRITTGA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEEEcccccHHHHHHHcccccEEcccccccccEEEccEEEEEcccccccccccccccEEcccccEEEEcccccccccccccEEEEEEEccccccEEEEEcccEEcccccccccccccccccEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEEEEccccEEEEEccHccccEEEcccccccEEEEEccHHHHHcEcccccccccccEEEEcccccEEHccccEEEcccEEEEEEEEEEEccccEEEEEEccccEEEEEEEccccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mkqastkypyqangsgqqnvslsdrqnkiyyctdldksvlinnfekrGWIHVNSVEDDWNFYWAGIQTCRNIFSLELgyrmndnqiinhfpnhyeltntptarrgkkfdLRLYVLVTSFrplkcylfklgfcrfctvkYDKNITELAARRRITTGA
Flexible Loop (DISEMBL)
mkqastkypyqangsgqqnvslsdRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQIINHFpnhyeltntptarrgkkfDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNItelaarrrittga
Low Complexity Region (SEG)
MKQASTKYPYQANGSGQQNVSLSDRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQIINHFPNHYELTNTPTARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELAARRRITTGA
Disordered region (IsUnstruct)
**************************NKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQIINHFPNHYELTNTPTARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELAA********
Disordered Region (DISOPRED)
****************************IYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQIINHFPNHYELTNTPTARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELAARRRITTG*
Disordered Region (DISEMBL)
********************SLSDRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQIINHFPNHYELTNTPTARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELAARRRITTGA
Disordered Region (DISPRO)
***ASTKY*YQAN************QNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQIINHFPNHYELTNTPTARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELAAR*******
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQASTKYPYQANGSGQQNVSLSDRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQIINHFPNHYELTNTPTARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELAARRRITTGA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
O95922	423	Probable tubulin polyglut	yes	N/A	0.442	0.163	0.671	2e-24
Q0VC71	423	Probable tubulin polyglut	yes	N/A	0.442	0.163	0.671	2e-24
Q91V51	423	Probable tubulin polyglut	yes	N/A	0.442	0.163	0.671	4e-24
Q5PPI9	423	Probable tubulin polyglut	yes	N/A	0.442	0.163	0.657	6e-24
Q23SI8	433	Probable alpha-tubulin po	N/A	N/A	0.448	0.161	0.461	2e-14
Q8CHB8	1328	Tubulin polyglutamylase T	no	N/A	0.294	0.034	0.551	7e-07
Q6EEF3	1299	Tubulin polyglutamylase T	N/A	N/A	0.25	0.030	0.545	9e-07
Q5R978	1299	Tubulin polyglutamylase T	no	N/A	0.25	0.030	0.545	1e-06
Q6EMB2	1281	Tubulin polyglutamylase T	no	N/A	0.25	0.030	0.545	1e-06
Q80UG8	1193	Tubulin polyglutamylase T	no	N/A	0.320	0.041	0.46	1e-06

>sp|O95922|TTLL1_HUMAN Probable tubulin polyglutamylase TTLL1 OS=Homo sapiens GN=TTLL1 PE=2 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 59/70 (84%), Gaps = 1/70 (1%)

Query: 28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
          K+ + TD++KSVLINNFEKRGW+ V   ED WNFYW  +QT RN+FS+E GYR++D+QI+
Sbjct: 4  KVKWVTDIEKSVLINNFEKRGWVQVTENED-WNFYWMSVQTIRNVFSVEAGYRLSDDQIV 62

Query: 88 NHFPNHYELT 97
          NHFPNHYELT
Sbjct: 63 NHFPNHYELT 72

Catalytic subunit of the neuronal tubulin polyglutamylase complex. Modifies alpha- and beta-tubulin, generating side chains of glutamate on the gamma-carboxyl groups of specific glutamate residues within the C-terminal tail of alpha- and beta-tubulin.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q0VC71|TTLL1_BOVIN Probable tubulin polyglutamylase TTLL1 OS=Bos taurus GN=TTLL1 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 59/70 (84%), Gaps = 1/70 (1%)

Query: 28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
          K+ + TD++KSVLINNFEKRGW+ V   ED WNFYW  +QT RN+FS+E GYR++D+QI+
Sbjct: 4  KVKWVTDIEKSVLINNFEKRGWVQVTENED-WNFYWMSVQTIRNVFSVETGYRLSDDQIV 62

Query: 88 NHFPNHYELT 97
          NHFPNHYELT
Sbjct: 63 NHFPNHYELT 72

Catalytic subunit of the neuronal tubulin polyglutamylase complex. Modifies alpha- and beta-tubulin, generating side chains of glutamate on the gamma-carboxyl groups of specific glutamate residues within the C-terminal tail of alpha- and beta-tubulin.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q91V51|TTLL1_MOUSE Probable tubulin polyglutamylase TTLL1 OS=Mus musculus GN=Ttll1 PE=1 SV=1

 Score =  110 bits (275), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 59/70 (84%), Gaps = 1/70 (1%)

Query: 28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
          ++ + TD++KSVLINNFEKRGWI V   ED WNFYW  +QT RN+FS+E GYR++D+QI+
Sbjct: 4  RVKWVTDIEKSVLINNFEKRGWIQVTENED-WNFYWMSVQTIRNVFSVETGYRLSDDQIV 62

Query: 88 NHFPNHYELT 97
          NHFPNHYELT
Sbjct: 63 NHFPNHYELT 72

Catalytic subunit of the neuronal tubulin polyglutamylase complex. Modifies alpha- and beta-tubulin, generating side chains of glutamate on the gamma-carboxyl groups of specific glutamate residues within the C-terminal tail of alpha- and beta-tubulin.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5PPI9|TTLL1_RAT Probable tubulin polyglutamylase TTLL1 OS=Rattus norvegicus GN=Ttll1 PE=2 SV=1

 Score =  109 bits (273), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 59/70 (84%), Gaps = 1/70 (1%)

Query: 28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
          ++ + TD++KSVLINNFEKRGW+ V   ED WNFYW  +QT RN+FS+E GYR++D+QI+
Sbjct: 4  RVKWVTDIEKSVLINNFEKRGWVQVTENED-WNFYWMSVQTIRNVFSVETGYRLSDDQIV 62

Query: 88 NHFPNHYELT 97
          NHFPNHYELT
Sbjct: 63 NHFPNHYELT 72

Catalytic subunit of the neuronal tubulin polyglutamylase complex. Modifies alpha- and beta-tubulin, generating side chains of glutamate on the gamma-carboxyl groups of specific glutamate residues within the C-terminal tail of alpha- and beta-tubulin.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q23SI8|TTLL1_TETTS Probable alpha-tubulin polyglutamylase Ttll1 OS=Tetrahymena thermophila (strain SB210) GN=Ttll1 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 50/91 (54%), Gaps = 21/91 (23%)

Query: 28 KIYYCTDLDKSVLINNFEKRGWIHV-NSVEDDWNFYWAGIQTCRNIFS------------ 74
          K+ Y TD DK VL +NF  RGW    +  +DDWN YWA +   RNIF+            
Sbjct: 5  KLKYKTDFDKCVLTDNFAARGWTRCGDKDDDDWNIYWATVWNVRNIFNPKSDSQVVSKSD 64

Query: 75 --------LELGYRMNDNQIINHFPNHYELT 97
                   +LG R+ND QIINHFPNHYELT
Sbjct: 65 FLFLQKNLQKLGIRLNDMQIINHFPNHYELT 95

Probable tubulin polyglutamylase with a strong preference for alpha-tubulin. Modifies alpha-tubulin, generating side chains of glutamate on the gamma-carboxyl groups of specific glutamate residues within the C-terminal tail of alpha-tubulin.

Tetrahymena thermophila (strain SB210) (taxid: 312017)

EC: 6

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8CHB8|TTLL5_MOUSE Tubulin polyglutamylase TTLL5 OS=Mus musculus GN=Ttll5 PE=2 SV=3

 Score = 53.1 bits (126), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 98  NTPTARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYD---KNI 143
           N P      KFD+RLYVLVTS+ PL  YL++ G  RF TV+YD   KNI
Sbjct: 212 NNPLLIDDFKFDVRLYVLVTSYDPLVIYLYEEGLARFATVRYDQGSKNI 260

Polyglutamylase which preferentially modifies alpha-tubulin. Involved in the side-chain initiation step of the polyglutamylation reaction rather than in the elongation step. Increases the effects of NCOA2 in glucocorticoid receptor-mediated repression and induction and in androgen receptor-mediated induction.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q6EEF3|TTLL5_CHLAE Tubulin polyglutamylase TTLL5 OS=Chlorocebus aethiops GN=TTLL5 PE=2 SV=2

 Score = 52.8 bits (125), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 30/44 (68%)

Query: 98  NTPTARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDK 141
           N P      KFD+RLYVLVTS+ PL  YL++ G  RF TV+YD+
Sbjct: 212 NNPLLIDDFKFDVRLYVLVTSYDPLVIYLYEEGLARFATVRYDQ 255

Polyglutamylase which preferentially modifies alpha-tubulin. Involved in the side-chain initiation step of the polyglutamylation reaction rather than in the elongation step. Increases the effects of NCOA2 in glucocorticoid receptor-mediated repression and induction and in androgen receptor-mediated induction.

Chlorocebus aethiops (taxid: 9534)

EC: 6

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5R978|TTLL5_PONAB Tubulin polyglutamylase TTLL5 OS=Pongo abelii GN=TTLL5 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 30/44 (68%)

Query: 98  NTPTARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDK 141
           N P      KFD+RLYVLVTS+ PL  YL++ G  RF TV+YD+
Sbjct: 212 NNPLLIDDFKFDVRLYVLVTSYDPLVIYLYEEGLARFATVRYDQ 255

Polyglutamylase which preferentially modifies alpha-tubulin. Involved in the side-chain initiation step of the polyglutamylation reaction rather than in the elongation step. Increases the effects of NCOA2 in glucocorticoid receptor-mediated repression and induction and in androgen receptor-mediated induction.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q6EMB2|TTLL5_HUMAN Tubulin polyglutamylase TTLL5 OS=Homo sapiens GN=TTLL5 PE=1 SV=3

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 30/44 (68%)

Query: 98  NTPTARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDK 141
           N P      KFD+RLYVLVTS+ PL  YL++ G  RF TV+YD+
Sbjct: 212 NNPLLIDDFKFDVRLYVLVTSYDPLVIYLYEEGLARFATVRYDQ 255

Polyglutamylase which preferentially modifies alpha-tubulin. Involved in the side-chain initiation step of the polyglutamylation reaction rather than in the elongation step (By similarity). Increases the effects of NCOA2 in glucocorticoid receptor-mediated repression and induction and in androgen receptor-mediated induction.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q80UG8|TTLL4_MOUSE Tubulin polyglutamylase TTLL4 OS=Mus musculus GN=Ttll4 PE=2 SV=3

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 31/50 (62%)

Query: 100 PTARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELAAR 149
           P    G KFDLR+YV VTS+ PL+ YLF  G  RF + KY  ++  L+ +
Sbjct: 750 PYLISGSKFDLRIYVYVTSYDPLRIYLFSDGLVRFASCKYSPSMKSLSNK 799

Polyglutamylase which preferentially modifies beta-tubulin and nucleosome assembly proteins NAP1 and NAP2. Involved in the side-chain initiation step of the polyglutamylation reaction rather than in the elongation step.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
195125235	498	GI12743 [Drosophila mojavensis] gi|19391	0.544	0.170	0.674	9e-29
194747507	448	GF25086 [Drosophila ananassae] gi|190623	0.538	0.187	0.674	3e-27
195428998	507	GK16596 [Drosophila willistoni] gi|19415	0.442	0.136	0.771	6e-27
307212492	408	Probable tubulin polyglutamylase TTLL1 [	0.455	0.174	0.75	6e-27
198463016	480	GA16777 [Drosophila pseudoobscura pseudo	0.442	0.143	0.771	7e-27
195491842	487	GE21463 [Drosophila yakuba] gi|194179838	0.442	0.141	0.771	7e-27
195587832	487	GD13857 [Drosophila simulans] gi|1941956	0.442	0.141	0.771	8e-27
157108872	436	hypothetical protein AaeL_AAEL005148 [Ae	0.493	0.176	0.705	8e-27
24657931	487	CG32238 [Drosophila melanogaster] gi|729	0.442	0.141	0.771	8e-27
195167958	480	GL17911 [Drosophila persimilis] gi|19410	0.442	0.143	0.771	8e-27

>gi|195125235|ref|XP_002007087.1| GI12743 [Drosophila mojavensis] gi|193918696|gb|EDW17563.1| GI12743 [Drosophila mojavensis]

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 72/86 (83%), Gaps = 1/86 (1%)

Query: 12  ANGSGQQNVSLSDRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRN 71
           +N +G   V+ S  + KI +CTDLDKSVL+NNFEKRGW  VN  +DDW+FYWAG+QTCRN
Sbjct: 69  SNAAGGAGVASSHERIKIGFCTDLDKSVLVNNFEKRGWNQVNG-DDDWHFYWAGVQTCRN 127

Query: 72  IFSLELGYRMNDNQIINHFPNHYELT 97
           IFS++ GYRM+DNQ+INHFPNHYEL+
Sbjct: 128 IFSVDSGYRMHDNQMINHFPNHYELS 153

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194747507|ref|XP_001956193.1| GF25086 [Drosophila ananassae] gi|190623475|gb|EDV38999.1| GF25086 [Drosophila ananassae]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%), Gaps = 2/86 (2%)

Query: 12  ANGSGQQNVSLSDRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRN 71
           AN  G       D+  KI +CTDLDKSVL+NNFEKRGW  VN  +DDW+FYWAG+QTCRN
Sbjct: 22  ANSGGASGGQGHDKL-KIGFCTDLDKSVLVNNFEKRGWHQVNG-DDDWHFYWAGVQTCRN 79

Query: 72  IFSLELGYRMNDNQIINHFPNHYELT 97
           IFS++ GYRM+DNQ+INHFPNHYEL+
Sbjct: 80  IFSVDSGYRMHDNQMINHFPNHYELS 105

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195428998|ref|XP_002062551.1| GK16596 [Drosophila willistoni] gi|194158636|gb|EDW73537.1| GK16596 [Drosophila willistoni]

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 64/70 (91%), Gaps = 1/70 (1%)

Query: 28  KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
           KI +CTDLDKSVL+NNFEKRGW  VN  +DDW+FYWAG+QTCRNIFS++ GYRM+DNQ+I
Sbjct: 96  KIGFCTDLDKSVLVNNFEKRGWHQVNG-DDDWHFYWAGVQTCRNIFSVDSGYRMHDNQMI 154

Query: 88  NHFPNHYELT 97
           NHFPNHYEL+
Sbjct: 155 NHFPNHYELS 164

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212492|gb|EFN88223.1| Probable tubulin polyglutamylase TTLL1 [Harpegnathos saltator]

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 63/72 (87%), Gaps = 1/72 (1%)

Query: 26 QNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQ 85
          + KI +CTD+DKSV+++NFEKRGW  V   EDDWNFYWA IQ+CRNIFS+E GYRM+DNQ
Sbjct: 3  RTKITFCTDVDKSVIVHNFEKRGWTQVGP-EDDWNFYWAAIQSCRNIFSIETGYRMDDNQ 61

Query: 86 IINHFPNHYELT 97
          IINHFPNHYELT
Sbjct: 62 IINHFPNHYELT 73

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198463016|ref|XP_001352654.2| GA16777 [Drosophila pseudoobscura pseudoobscura] gi|198151077|gb|EAL30152.2| GA16777 [Drosophila pseudoobscura pseudoobscura]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 64/70 (91%), Gaps = 1/70 (1%)

Query: 28  KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
           KI +CTDLDKSVL+NNFEKRGW  VN  +DDW+FYWAG+QTCRNIFS++ GYRM+DNQ+I
Sbjct: 69  KIGFCTDLDKSVLVNNFEKRGWHQVNG-DDDWHFYWAGVQTCRNIFSVDSGYRMHDNQMI 127

Query: 88  NHFPNHYELT 97
           NHFPNHYEL+
Sbjct: 128 NHFPNHYELS 137

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195491842|ref|XP_002093737.1| GE21463 [Drosophila yakuba] gi|194179838|gb|EDW93449.1| GE21463 [Drosophila yakuba]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 64/70 (91%), Gaps = 1/70 (1%)

Query: 28  KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
           KI +CTDLDKSVL+NNFEKRGW  VN  +DDW+FYWAG+QTCRNIFS++ GYRM+DNQ+I
Sbjct: 75  KIGFCTDLDKSVLVNNFEKRGWHQVNG-DDDWHFYWAGVQTCRNIFSVDSGYRMHDNQMI 133

Query: 88  NHFPNHYELT 97
           NHFPNHYEL+
Sbjct: 134 NHFPNHYELS 143

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195587832|ref|XP_002083665.1| GD13857 [Drosophila simulans] gi|194195674|gb|EDX09250.1| GD13857 [Drosophila simulans]

 Score =  125 bits (313), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 64/70 (91%), Gaps = 1/70 (1%)

Query: 28  KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
           KI +CTDLDKSVL+NNFEKRGW  VN  +DDW+FYWAG+QTCRNIFS++ GYRM+DNQ+I
Sbjct: 75  KIGFCTDLDKSVLVNNFEKRGWHQVNG-DDDWHFYWAGVQTCRNIFSVDSGYRMHDNQMI 133

Query: 88  NHFPNHYELT 97
           NHFPNHYEL+
Sbjct: 134 NHFPNHYELS 143

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157108872|ref|XP_001650424.1| hypothetical protein AaeL_AAEL005148 [Aedes aegypti] gi|108879202|gb|EAT43427.1| AAEL005148-PA [Aedes aegypti]

 Score =  125 bits (313), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 66/78 (84%), Gaps = 1/78 (1%)

Query: 20 VSLSDRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGY 79
          ++    + KI +CTDLDKSVLINNFEKRGW+ V S +DDWNFYWAG  TCRNIFS++ GY
Sbjct: 20 IAAGHERMKICFCTDLDKSVLINNFEKRGWVQV-SADDDWNFYWAGTGTCRNIFSVDSGY 78

Query: 80 RMNDNQIINHFPNHYELT 97
          RM+DNQ+INHFPNHYEL+
Sbjct: 79 RMHDNQLINHFPNHYELS 96

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24657931|ref|NP_729025.1| CG32238 [Drosophila melanogaster] gi|7292526|gb|AAF47928.1| CG32238 [Drosophila melanogaster] gi|108383566|gb|ABF85744.1| IP12417p [Drosophila melanogaster]

 Score =  125 bits (313), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 64/70 (91%), Gaps = 1/70 (1%)

Query: 28  KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
           KI +CTDLDKSVL+NNFEKRGW  VN  +DDW+FYWAG+QTCRNIFS++ GYRM+DNQ+I
Sbjct: 75  KIGFCTDLDKSVLVNNFEKRGWHQVNG-DDDWHFYWAGVQTCRNIFSVDSGYRMHDNQMI 133

Query: 88  NHFPNHYELT 97
           NHFPNHYEL+
Sbjct: 134 NHFPNHYELS 143

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195167958|ref|XP_002024799.1| GL17911 [Drosophila persimilis] gi|194108229|gb|EDW30272.1| GL17911 [Drosophila persimilis]

 Score =  125 bits (313), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 64/70 (91%), Gaps = 1/70 (1%)

Query: 28  KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
           KI +CTDLDKSVL+NNFEKRGW  VN  +DDW+FYWAG+QTCRNIFS++ GYRM+DNQ+I
Sbjct: 69  KIGFCTDLDKSVLVNNFEKRGWHQVNG-DDDWHFYWAGVQTCRNIFSVDSGYRMHDNQMI 127

Query: 88  NHFPNHYELT 97
           NHFPNHYEL+
Sbjct: 128 NHFPNHYELS 137

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
FB|FBgn0052238	487	CG32238 [Drosophila melanogast	0.538	0.172	0.658	1.1e-47
UNIPROTKB|F1NZA9	427	TTLL1 "Uncharacterized protein	0.442	0.161	0.671	9.1e-43
UNIPROTKB|Q0VC71	423	TTLL1 "Probable tubulin polygl	0.442	0.163	0.671	1.6e-42
UNIPROTKB|E2RTA4	423	TTLL1 "Uncharacterized protein	0.442	0.163	0.671	1.6e-42
UNIPROTKB|O95922	423	TTLL1 "Probable tubulin polygl	0.442	0.163	0.671	1.6e-42
MGI|MGI:2443047	423	Ttll1 "tubulin tyrosine ligase	0.442	0.163	0.671	2.9e-42
RGD|1309124	423	Ttll1 "tubulin tyrosine ligase	0.442	0.163	0.657	3.9e-42
UNIPROTKB|Q5PPI9	423	Ttll1 "Probable tubulin polygl	0.442	0.163	0.657	3.9e-42
UNIPROTKB|F1SJR6	423	TTLL1 "Uncharacterized protein	0.442	0.163	0.671	3.9e-42
ZFIN|ZDB-GENE-040426-1326	423	ttll1 "tubulin tyrosine ligase	0.442	0.163	0.657	9.4e-42

FB|FBgn0052238 CG32238 [Drosophila melanogaster (taxid:7227)]

 Score = 322 (118.4 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
 Identities = 56/85 (65%), Positives = 69/85 (81%)

Query:    13 NGSGQQNVSLSDRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNI 72
             +G G    +    + KI +CTDLDKSVL+NNFEKRGW  VN  +DDW+FYWAG+QTCRNI
Sbjct:    60 SGGGASGGAQGHDKLKIGFCTDLDKSVLVNNFEKRGWHQVNG-DDDWHFYWAGVQTCRNI 118

Query:    73 FSLELGYRMNDNQIINHFPNHYELT 97
             FS++ GYRM+DNQ+INHFPNHYEL+
Sbjct:   119 FSVDSGYRMHDNQMINHFPNHYELS 143

GO:0004835 "tubulin-tyrosine ligase activity" evidence=ISS

GO:0018166 "C-terminal protein-tyrosinylation" evidence=ISS

UNIPROTKB|F1NZA9 TTLL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 282 (104.3 bits), Expect = 9.1e-43, Sum P(2) = 9.1e-43
 Identities = 47/70 (67%), Positives = 60/70 (85%)

Query:    28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
             K+ + TD++KSVLINNFEKRGWI V +  +DWNFYW  +QT RN+FS+E GYR++D+QI+
Sbjct:     8 KVKWVTDIEKSVLINNFEKRGWIQV-AENEDWNFYWMSVQTIRNVFSVETGYRLSDDQIV 66

Query:    88 NHFPNHYELT 97
             NHFPNHYELT
Sbjct:    67 NHFPNHYELT 76

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA

GO:0003351 "epithelial cilium movement" evidence=IEA

GO:0018095 "protein polyglutamylation" evidence=IEA

GO:0035083 "cilium axoneme assembly" evidence=IEA

GO:0043064 "flagellum organization" evidence=IEA

UNIPROTKB|Q0VC71 TTLL1 "Probable tubulin polyglutamylase TTLL1" [Bos taurus (taxid:9913)]

 Score = 282 (104.3 bits), Expect = 1.6e-42, Sum P(2) = 1.6e-42
 Identities = 47/70 (67%), Positives = 59/70 (84%)

Query:    28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
             K+ + TD++KSVLINNFEKRGW+ V   ED WNFYW  +QT RN+FS+E GYR++D+QI+
Sbjct:     4 KVKWVTDIEKSVLINNFEKRGWVQVTENED-WNFYWMSVQTIRNVFSVETGYRLSDDQIV 62

Query:    88 NHFPNHYELT 97
             NHFPNHYELT
Sbjct:    63 NHFPNHYELT 72

GO:0043064 "flagellum organization" evidence=IEA

GO:0035083 "cilium axoneme assembly" evidence=IEA

GO:0018095 "protein polyglutamylation" evidence=IEA

GO:0003351 "epithelial cilium movement" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA

UNIPROTKB|E2RTA4 TTLL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 282 (104.3 bits), Expect = 1.6e-42, Sum P(2) = 1.6e-42
 Identities = 47/70 (67%), Positives = 59/70 (84%)

Query:    28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
             K+ + TD++KSVLINNFEKRGW+ V   ED WNFYW  +QT RN+FS+E GYR++D+QI+
Sbjct:     4 KVKWVTDIEKSVLINNFEKRGWVQVTENED-WNFYWMSVQTIRNVFSVETGYRLSDDQIV 62

Query:    88 NHFPNHYELT 97
             NHFPNHYELT
Sbjct:    63 NHFPNHYELT 72

GO:0043064 "flagellum organization" evidence=IEA

GO:0035083 "cilium axoneme assembly" evidence=IEA

GO:0018095 "protein polyglutamylation" evidence=IEA

GO:0003351 "epithelial cilium movement" evidence=IEA

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA

UNIPROTKB|O95922 TTLL1 "Probable tubulin polyglutamylase TTLL1" [Homo sapiens (taxid:9606)]

 Score = 282 (104.3 bits), Expect = 1.6e-42, Sum P(2) = 1.6e-42
 Identities = 47/70 (67%), Positives = 59/70 (84%)

Query:    28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
             K+ + TD++KSVLINNFEKRGW+ V   ED WNFYW  +QT RN+FS+E GYR++D+QI+
Sbjct:     4 KVKWVTDIEKSVLINNFEKRGWVQVTENED-WNFYWMSVQTIRNVFSVEAGYRLSDDQIV 62

Query:    88 NHFPNHYELT 97
             NHFPNHYELT
Sbjct:    63 NHFPNHYELT 72

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0003351 "epithelial cilium movement" evidence=IEA

GO:0035083 "cilium axoneme assembly" evidence=IEA

GO:0043064 "flagellum organization" evidence=IEA

GO:0018095 "protein polyglutamylation" evidence=TAS

GO:0070740 "tubulin-glutamic acid ligase activity" evidence=TAS

MGI|MGI:2443047 Ttll1 "tubulin tyrosine ligase-like 1" [Mus musculus (taxid:10090)]

 Score = 280 (103.6 bits), Expect = 2.9e-42, Sum P(2) = 2.9e-42
 Identities = 47/70 (67%), Positives = 59/70 (84%)

Query:    28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
             ++ + TD++KSVLINNFEKRGWI V   ED WNFYW  +QT RN+FS+E GYR++D+QI+
Sbjct:     4 RVKWVTDIEKSVLINNFEKRGWIQVTENED-WNFYWMSVQTIRNVFSVETGYRLSDDQIV 62

Query:    88 NHFPNHYELT 97
             NHFPNHYELT
Sbjct:    63 NHFPNHYELT 72

GO:0003351 "epithelial cilium movement" evidence=IMP

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0018095 "protein polyglutamylation" evidence=IMP

GO:0035083 "cilium axoneme assembly" evidence=IMP

GO:0043064 "flagellum organization" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=IMP

RGD|1309124 Ttll1 "tubulin tyrosine ligase-like family, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 279 (103.3 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
 Identities = 46/70 (65%), Positives = 59/70 (84%)

Query:    28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
             ++ + TD++KSVLINNFEKRGW+ V   ED WNFYW  +QT RN+FS+E GYR++D+QI+
Sbjct:     4 RVKWVTDIEKSVLINNFEKRGWVQVTENED-WNFYWMSVQTIRNVFSVETGYRLSDDQIV 62

Query:    88 NHFPNHYELT 97
             NHFPNHYELT
Sbjct:    63 NHFPNHYELT 72

GO:0003351 "epithelial cilium movement" evidence=IEA;ISO

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0018095 "protein polyglutamylation" evidence=IEA;ISO

GO:0035083 "cilium axoneme assembly" evidence=IEA;ISO

GO:0043064 "flagellum organization" evidence=IEA;ISO

GO:0060271 "cilium morphogenesis" evidence=ISO

UNIPROTKB|Q5PPI9 Ttll1 "Probable tubulin polyglutamylase TTLL1" [Rattus norvegicus (taxid:10116)]

 Score = 279 (103.3 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
 Identities = 46/70 (65%), Positives = 59/70 (84%)

Query:    28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
             ++ + TD++KSVLINNFEKRGW+ V   ED WNFYW  +QT RN+FS+E GYR++D+QI+
Sbjct:     4 RVKWVTDIEKSVLINNFEKRGWVQVTENED-WNFYWMSVQTIRNVFSVETGYRLSDDQIV 62

Query:    88 NHFPNHYELT 97
             NHFPNHYELT
Sbjct:    63 NHFPNHYELT 72

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA

UNIPROTKB|F1SJR6 TTLL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 283 (104.7 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
 Identities = 47/70 (67%), Positives = 59/70 (84%)

Query:    28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
             K+ + TD++KSVLINNFEKRGW+ V   ED WNFYW  +QT RN+FS+E GYR++D+QI+
Sbjct:     4 KVKWVTDIEKSVLINNFEKRGWVQVTESED-WNFYWMSVQTIRNVFSVETGYRLSDDQIV 62

Query:    88 NHFPNHYELT 97
             NHFPNHYELT
Sbjct:    63 NHFPNHYELT 72

GO:0043064 "flagellum organization" evidence=IEA

GO:0035083 "cilium axoneme assembly" evidence=IEA

GO:0018095 "protein polyglutamylation" evidence=IEA

GO:0003351 "epithelial cilium movement" evidence=IEA

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1326 ttll1 "tubulin tyrosine ligase-like family, member 1" [Danio rerio (taxid:7955)]

 Score = 272 (100.8 bits), Expect = 9.4e-42, Sum P(2) = 9.4e-42
 Identities = 46/70 (65%), Positives = 57/70 (81%)

Query:    28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
             K+ + TD++KSVLINNFEKRGWI V   ED WNFYW  IQT R +FS++ GYR+ D+Q++
Sbjct:     4 KVKWVTDIEKSVLINNFEKRGWIQVTDSED-WNFYWMSIQTIRTVFSVDTGYRLTDDQMV 62

Query:    88 NHFPNHYELT 97
             NHFPNHYELT
Sbjct:    63 NHFPNHYELT 72

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O95922	TTLL1_HUMAN	6, ., -, ., -, ., -	0.6714	0.4423	0.1631	yes	N/A
Q91V51	TTLL1_MOUSE	6, ., -, ., -, ., -	0.6714	0.4423	0.1631	yes	N/A
Q5PPI9	TTLL1_RAT	6, ., -, ., -, ., -	0.6571	0.4423	0.1631	yes	N/A
Q0VC71	TTLL1_BOVIN	6, ., -, ., -, ., -	0.6714	0.4423	0.1631	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	156
pfam03133	291	pfam03133, TTL, Tubulin-tyrosine ligase family	6e-15

>gnl|CDD|217380 pfam03133, TTL, Tubulin-tyrosine ligase family

 Score = 69.7 bits (171), Expect = 6e-15
 Identities = 22/42 (52%), Positives = 33/42 (78%)

Query: 105 GKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITEL 146
           G+KFD+RLYVLVTS  PL+ Y+++ G  RF +VKY  ++++L
Sbjct: 114 GRKFDIRLYVLVTSVNPLRVYVYREGLLRFASVKYSPSVSDL 155

Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyzes the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis. Bacterial homologs of TTL are predicted to form peptide tags. Some of these are fused to a 2-oxoglutarate Fe(II)-dependent dioxygenase domain. Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
KOG2156|consensus	662		99.97
PF03133	292	TTL: Tubulin-tyrosine ligase family; InterPro: IPR	99.91
KOG2157|consensus	497		99.91
KOG2158|consensus	565		99.79
KOG2155|consensus	631		99.74

>KOG2156|consensus

Probab=99.97  E-value=2.1e-32  Score=243.22  Aligned_cols=144  Identities=28%  Similarity=0.433  Sum_probs=124.9

Q ss_pred             CcccccccCCCccccccC--CCCCcceEEE-eCCChhHHHHHhhcCCcEEecCCCCCeEEEeccccccccccchhccccC
Q psy9337           5 STKYPYQANGSGQQNVSL--SDRQNKIYYC-TDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRM   81 (156)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~--~~~~~~ir~~-t~~~~~vV~~~l~~~Gw~~v~~~~~dWnv~W~~~~~~~~~f~~~~~~~l   81 (156)
                      +.--||-.-+|-...|..  |+..+.++|+ |+....+|+++|.+.||++++ ..++|..+|+......      ..+.+
T Consensus       171 p~VpP~i~f~s~~~k~~k~p~~~~~vl~w~~t~~~p~vv~~vl~~sgfkivk-~n~dw~g~Wg~h~ksp------~fr~i  243 (662)
T KOG2156|consen  171 PRVPPTILFDSSADKVPKPPPPLHAVLKWKPTEVMPKVVRQVLANSGFKIVK-VNDDWMGVWGHHLKSP------SFRAI  243 (662)
T ss_pred             CCCCCeeeeccccccCCCCChhHHHHhccCCcchhHHHHHHHHHhcccEEec-ccchHHHHhhhhcCCc------hhhhh
Confidence            334566555666666773  3344568888 678888999999999999999 8899999999976421      34578


Q ss_pred             CccchhccCCeeeeecC---------------------------------------------------------------
Q psy9337          82 NDNQIINHFPNHYELTN---------------------------------------------------------------   98 (156)
Q Consensus        82 ~~~QkVNHFP~~~~ltr---------------------------------------------------------------   98 (156)
                      ++||+||||||++.|+|                                                               
T Consensus       244 r~HQkvNH~PGsF~IGRKD~lW~~~~~~~~rf~~kef~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv  323 (662)
T KOG2156|consen  244 RSHQKVNHFPGSFRIGRKDRLWRNILRNQVRFGKKEFGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRV  323 (662)
T ss_pred             hhhhhhccCCCccccccchHHHHHHHHHHHHhcccccCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEe
Confidence            99999999999999998                                                               


Q ss_pred             --------------------cCeeeeccccceeEEEEEccccccEEEEecCcEEeeccCCCCCCCCCccCceeeecc
Q psy9337          99 --------------------TPTARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELAARRRITTG  155 (156)
Q Consensus        99 --------------------~plLi~g~KFDlR~yvlvts~~Pl~~y~~~~g~~Rf~~~~y~~~~~~~~~~~~HlTn  155 (156)
                                          +|+||+|-|||+|+||+|||++|||||+|.+|++|||+++|++...++.|+||||||
T Consensus       324 ~~kw~q~pk~rpLvvQ~yieRP~ling~KFDlrlYv~vts~nPLRIy~y~dgL~RFasvkYsp~~a~~~dKymhltn  400 (662)
T KOG2156|consen  324 INKWSQFPKDRPLVVQKYIERPLLINGSKFDLRLYVVVTSVNPLRIYIYNDGLVRFASVKYSPFDANNVDKYMHLTN  400 (662)
T ss_pred             ccchhhCCCcccHHHHHHhhcceeecCcceeEEEEEEEeecCceEEEEeccceeeeccccCCcccccccceeEEecc
Confidence                                999999999999999999999999999999999999999999988899999999998

>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed

Probab=99.91  E-value=2e-25  Score=185.50  Aligned_cols=58  Identities=45%  Similarity=0.805  Sum_probs=27.9

Q ss_pred             cCeeeeccccceeEEEEEccccccEEEEecCcEEeeccCCCCCCCCCccCceeeeccC
Q psy9337          99 TPTARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELAARRRITTGA  156 (156)
Q Consensus        99 ~plLi~g~KFDlR~yvlvts~~Pl~~y~~~~g~~Rf~~~~y~~~~~~~~~~~~HlTn~  156 (156)
                      |||||+|+|||||+||||+|.+||+||+|++|++|||+++|+....++.+.++||||.
T Consensus       109 ~PlLi~grKFDlR~yvlvts~~pl~vy~y~~g~vR~~~~~Y~~~~~~~~~~~~HlTN~  166 (292)
T PF03133_consen  109 NPLLIDGRKFDLRVYVLVTSLNPLRVYLYKEGYVRFASEPYDPDLDDLSDRFAHLTNY  166 (292)
T ss_dssp             SB--BTTB-EEEEEEEEE-T--T--EEEES--EEEE-SS-------------------
T ss_pred             CCeEEeeeeEEEEEEEEEeeccceeeeeccCceEEeccceeecccccccccccccccc
Confidence            9999999999999999999999999999999999999999995445899999999994

This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.

>KOG2157|consensus

Probab=99.91  E-value=5.5e-25  Score=196.73  Aligned_cols=126  Identities=38%  Similarity=0.675  Sum_probs=108.0

Q ss_pred             CCcceEEEeCCChhH-HHHHhhcCCcEEecCCCCCeEEEeccccccccccchhccccCCcc-chhccCCeeeeecC----
Q psy9337          25 RQNKIYYCTDLDKSV-LINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDN-QIINHFPNHYELTN----   98 (156)
Q Consensus        25 ~~~~ir~~t~~~~~v-V~~~l~~~Gw~~v~~~~~dWnv~W~~~~~~~~~f~~~~~~~l~~~-QkVNHFP~~~~ltr----   98 (156)
                      .+.+|.|+|+...+. |.+.+.+.||..+..+.++|+|+|+..+.+...+     ..+.++ |++||||++.+|+|    
T Consensus        72 ~k~~i~y~~~~~~~~~i~~~~~~~G~l~~~~~~~~~~f~w~~~~~~~~~~-----~~~~p~~~~~~~~p~~~~L~rkd~l  146 (497)
T KOG2157|consen   72 GKHKIKYRTQEKEPKLLNNFLNREGWLQFTESAEDWNFYWRGYEGIDFDF-----SWLAPYNQVVNHFPRRKELTRKDLL  146 (497)
T ss_pred             CCCceEEEecccchHHHHHHHhhcceeeecccccceEEEEeccccccHHH-----hhhcchhhhhhccccHHHhhhhHHh
Confidence            445799999866555 5555566699998877889999999976544332     246676 99999999999998    


Q ss_pred             --------------------------------------------------------------------------------
Q psy9337          99 --------------------------------------------------------------------------------   98 (156)
Q Consensus        99 --------------------------------------------------------------------------------   98 (156)
                                                                                                      
T Consensus       147 ~~~i~r~~~~~e~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~v~e~~~~~~~~~wIvKP~~~srg~GI~~~~~l~~l~~  226 (497)
T KOG2157|consen  147 MKLIKRYLALLERSRLPKAQLEDYILLDYVETTFVLLDEYKKLVEEYEEDSERSWWIVKPASKSRGRGIFLFNTLSDLQA  226 (497)
T ss_pred             hhhHHHHHHhccccccchhhcccceeecccchhhhhhhHHHHHHHHHHhccccceEEeccccccccceeEEecchhhhhh
Confidence                                                                                            


Q ss_pred             ------------------------cCeeeeccccceeEEEEEccccccEEEEecCcEEeeccCCCCCCCCCccCceeeec
Q psy9337          99 ------------------------TPTARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELAARRRITT  154 (156)
Q Consensus        99 ------------------------~plLi~g~KFDlR~yvlvts~~Pl~~y~~~~g~~Rf~~~~y~~~~~~~~~~~~HlT  154 (156)
                                              +||||+|+|||||+||+|++++||.+|+|++|++|||+++|++ ..|+.|.++|||
T Consensus       227 ~~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~~~pl~~y~yreg~lRf~t~~y~~-~~nl~n~~~HLt  305 (497)
T KOG2157|consen  227 IVDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTHFDPLLLYRYREGFLRFSTEPYGP-LVNLQNMSVHLT  305 (497)
T ss_pred             hhhcccccccccccccceeeeeccCccccCCceeeeeEEEEeecccchhheeeccceEEEEeccCcc-hhhhcccchhhh
Confidence                                    9999999999999999999999999999999999999999997 679999999999


Q ss_pred             cC
Q psy9337         155 GA  156 (156)
Q Consensus       155 n~  156 (156)
                      |.
T Consensus       306 N~  307 (497)
T KOG2157|consen  306 NV  307 (497)
T ss_pred             cc
Confidence            94

>KOG2158|consensus

Probab=99.79  E-value=4.4e-21  Score=169.36  Aligned_cols=57  Identities=32%  Similarity=0.461  Sum_probs=55.3

Q ss_pred             cCeee-eccccceeEEEEEccccccEEEEecCcEEeeccCCCCCCC-CCccCceeeecc
Q psy9337          99 TPTAR-RGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNI-TELAARRRITTG  155 (156)
Q Consensus        99 ~plLi-~g~KFDlR~yvlvts~~Pl~~y~~~~g~~Rf~~~~y~~~~-~~~~~~~~HlTn  155 (156)
                      .|||| |+.|||+|+|.+++|++||+||++++|++||||++|..++ .|+.+.||||||
T Consensus       265 ~pLli~dkyKfd~rvy~likSvdPlsIfva~eGlaRFcTeky~ePts~n~~~lymhlTn  323 (565)
T KOG2158|consen  265 YPLLISDKYKFDQRVYSLIKSVDPLSIFVASEGLARFCTEKYIEPTSANRSHLYMHLTN  323 (565)
T ss_pred             ccccccccceeeeeeeeeeeccCcceEEEeccchhhhhhccccCCCcccHHHHHHHHHH
Confidence            99999 9999999999999999999999999999999999999876 699999999998

>KOG2155|consensus

Probab=99.74  E-value=9.5e-19  Score=154.35  Aligned_cols=120  Identities=24%  Similarity=0.299  Sum_probs=109.8

Q ss_pred             CcceEEEeCCChhHHHHHhhcCCcEEecCCCCCeEEEeccccccccccchhccccCCccchhccCCeeeeecC-------
Q psy9337          26 QNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQIINHFPNHYELTN-------   98 (156)
Q Consensus        26 ~~~ir~~t~~~~~vV~~~l~~~Gw~~v~~~~~dWnv~W~~~~~~~~~f~~~~~~~l~~~QkVNHFP~~~~ltr-------   98 (156)
                      +++|+++||..  +|.+.|.+..|+.++ +..|.|++|..++.    -|++++....|.|.||+||.+..||-       
T Consensus       303 g~~~kVYtD~~--Qv~e~Lt~p~f~~t~-~~kdADilw~~~hf----~Dykkls~e~p~~~iNQFPfE~cltvKd~LA~~  375 (631)
T KOG2155|consen  303 GRKIKVYTDDT--QVTEHLTNPKFEYTD-DIKDADILWMIKHF----HDYKKLSEENPCGMINQFPFESCLTVKDLLAAC  375 (631)
T ss_pred             CceeEEEcCcH--HHHHhccCCceEecc-CccccceeeehhhH----HHHHHHhccCCcceeccCchHHHHHHHHHHHHH
Confidence            45799999988  899999999999999 89999999999873    23456678899999999999988874       


Q ss_pred             ------------------------------------------------------------------------------cC
Q psy9337          99 ------------------------------------------------------------------------------TP  100 (156)
Q Consensus        99 ------------------------------------------------------------------------------~p  100 (156)
                                                                                                    +|
T Consensus       376 a~r~~g~~~Wlq~TyNL~TqLpqFv~~fq~Rer~g~~N~WI~KPWNlAR~~Dt~vT~~L~~IIRm~EtgPKiv~kYIe~P  455 (631)
T KOG2155|consen  376 AMRDPGKNDWLQLTYNLNTQLPQFVARFQNRERNGQHNVWIVKPWNLARGMDTTVTEDLNQIIRMIETGPKIVCKYIERP  455 (631)
T ss_pred             HhhcCCCCcccccccccccchHHHHHHHHHHHhcCcCceEEechhhhhhcccchhhhhHHHHHHHHhcCchHHHHhcCCc
Confidence                                                                                          99


Q ss_pred             eeeeccccceeEEEEEccccccEEEEecCcEEeeccCCCCCCCCCccCceeeec
Q psy9337         101 TARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELAARRRITT  154 (156)
Q Consensus       101 lLi~g~KFDlR~yvlvts~~Pl~~y~~~~g~~Rf~~~~y~~~~~~~~~~~~HlT  154 (156)
                      +|..|-|||||.-|++.|++||++|||+..++||++.+|.++  |+.++..|+|
T Consensus       456 ~LFr~gKFDlRYiVllrsi~Pl~~yvy~~FWiRfsnn~fsL~--~f~dyEtHFT  507 (631)
T KOG2155|consen  456 LLFRNGKFDLRYIVLLRSIAPLTAYVYNRFWIRFSNNEFSLS--NFEDYETHFT  507 (631)
T ss_pred             ceeecCccceEEEEEEccccchhhhheeheeeeecCCccchh--hhhhhhhhhh
Confidence            999888999999999999999999999999999999999988  9999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
3tig_A	380	TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si	1e-10
3tig_A	380	TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si	3e-09

>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Length = 380

 Score = 57.7 bits (139), Expect = 1e-10
 Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 3/54 (5%)

Query: 45 EKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQIINHFPNHYELTN 98
              W  +      +N           +    LG+     Q++N++    +L  
Sbjct: 26 ASGQWKRLKRDNPKFNLMLG---ERNRLPFGRLGHEPGLVQLVNYYRGADKLCR 76

>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Length = 380

 Score = 53.5 bits (128), Expect = 3e-09
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 105 GKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKN 142
            +KFD+R +VLV +      YL++ G  R  +  Y   
Sbjct: 199 HRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDT 234

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
3tig_A	380	TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si	99.96

>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*

Probab=99.96  E-value=2.3e-30  Score=224.17  Aligned_cols=113  Identities=18%  Similarity=0.260  Sum_probs=81.8

Q ss_pred             CChhHHHHHhhcCC-cEEecCCCCCeEEEeccccccccccchhccccC-CccchhccCCeeeeecC--------------
Q psy9337          35 LDKSVLINNFEKRG-WIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRM-NDNQIINHFPNHYELTN--------------   98 (156)
Q Consensus        35 ~~~~vV~~~l~~~G-w~~v~~~~~dWnv~W~~~~~~~~~f~~~~~~~l-~~~QkVNHFP~~~~ltr--------------   98 (156)
                      ....+|+++|+++| |+++.++..+|||+|++....    +..++.+. .++|+||||||+++|||              
T Consensus        15 svy~~V~~vL~~~g~w~ev~~~~~~~dl~W~~~~~~----p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~~~   90 (380)
T 3tig_A           15 TVYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRL----PFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPEL   90 (380)
T ss_dssp             HHHHHHHHHHHHTTSEEECCTTCSCCSEEECCSSSC----CGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCHHH
T ss_pred             cHHHHHHHHHHhcCCeEEeCCCCCceeEEEecCCCC----CHHHhccCCCcceEEeecCCcccccccHHHHHHHHHhhhc
Confidence            34468999999999 999986788999999997631    22233333 67899999999987776              


Q ss_pred             --------------------------------------------------------------------------------
Q psy9337          99 --------------------------------------------------------------------------------   98 (156)
Q Consensus        99 --------------------------------------------------------------------------------   98 (156)
                                                                                                      
T Consensus        91 ~~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~srG~GI~l~~~~~  170 (380)
T 3tig_A           91 TETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDAT  170 (380)
T ss_dssp             HTTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESCC----CCBCCSCSH
T ss_pred             ccccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCccCCCCCEEEeCCHH
Confidence                                                                                            


Q ss_pred             --------------------cCeee--eccccceeEEEEEccccccEEEEecCcEEeeccCCCCCCCCCccCceeeecc
Q psy9337          99 --------------------TPTAR--RGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELAARRRITTG  155 (156)
Q Consensus        99 --------------------~plLi--~g~KFDlR~yvlvts~~Pl~~y~~~~g~~Rf~~~~y~~~~~~~~~~~~HlTn  155 (156)
                                          |||||  +|+|||||+||||+|  ||++|+|++|++|||+++|+++  +++|.++||||
T Consensus       171 ~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~y~~g~~Rfa~~~y~~~--~~~~~~~HLTN  245 (380)
T 3tig_A          171 ELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDT--NFQDMTSHLTN  245 (380)
T ss_dssp             HHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEECSCCEEEECC-------------------
T ss_pred             HHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEEEcCCEEEecCCCcCcc--chhhhhhhccc
Confidence                                89999  999999999999999  9999999999999999999976  89999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00