Psyllid ID: psy9357

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
METNAPQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIKKTAQKVKDEL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHccccEEEEcccccHHHHHHHHHcccEEEEccccEEEEEEEEEcccccccccccccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHccccHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHccccEEEEEccccccEEEEEEcccccEEEccccHHHHHHHHHHHHccccccEccccccccccccHccc
Coil and Loop (DISEMBL)
metnapqclgyrneygvateelcfPSVETVVRQLKRVVREHGQIKYIFVATdnnnlneplkEAFKrteirivpsdqsphvDLAILSQANHFIGNCISSFTAFVKRhrdvkglpssfwafpikkTAQKVKDEL
Flexible Loop (DISEMBL)
metnapqclgYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYifvatdnnnlnePLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKglpssfwafpikktaqkvkdel
Low Complexity Region (SEG)
METNAPQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIKKTAQKVKDEL
Disordered region (IsUnstruct)
*******CLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIK**********
Disordered Region (DISOPRED)
**TNAPQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPI***********
Disordered Region (DISEMBL)
METNAPQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIKKT********
Disordered Region (DISPRO)
*****PQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFW**PI***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METNAPQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIKKTAQKVKDEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q9V6X7	402	GDP-fucose protein O-fuco	yes	N/A	0.893	0.293	0.511	5e-31
Q6EV69	388	GDP-fucose protein O-fuco	yes	N/A	0.939	0.319	0.403	6e-19
Q9H488	388	GDP-fucose protein O-fuco	yes	N/A	0.939	0.319	0.403	6e-19
Q6EV70	395	GDP-fucose protein O-fuco	yes	N/A	0.939	0.313	0.387	2e-18
P83337	392	GDP-fucose protein O-fuco	yes	N/A	0.939	0.316	0.395	6e-17
Q91ZW2	393	GDP-fucose protein O-fuco	yes	N/A	0.931	0.312	0.384	9e-17
Q18014	389	GDP-fucose protein O-fuco	yes	N/A	0.856	0.290	0.377	5e-14

>sp|Q9V6X7|OFUT1_DROME GDP-fucose protein O-fucosyltransferase 1 OS=Drosophila melanogaster GN=O-fut1 PE=1 SV=1

 Score =  132 bits (332), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/127 (51%), Positives = 85/127 (66%), Gaps = 9/127 (7%)

Query: 5   APQCLGYRNEYGVATEELCFPSVETVVRQLKRVVRE------HGQIKYIFVATDNNNLNE 58
           +PQCLGY+NE G    ELC PS E ++RQLKR ++         +IK +FVA+D+N++  
Sbjct: 266 SPQCLGYKNERGALYPELCMPSKEAIIRQLKRTIKNVRQTQPDNEIKSVFVASDSNHMIG 325

Query: 59  PLKEAFKRTEIRI--VPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSF 116
            L  A  R  I +  +P D  P++DLAIL Q+NHFIGNCISS++AF KR RDV G PS F
Sbjct: 326 ELNTALSRMGISVHKLPED-DPYLDLAILGQSNHFIGNCISSYSAFEKRERDVHGFPSYF 384

Query: 117 WAFPIKK 123
           W FP +K
Sbjct: 385 WGFPKEK 391

Catalyzes the reaction that attaches fucose through an O-glycosidic linkage to a conserved serine or threonine residue in EGF domains. Plays a crucial role in Notch signaling; essential for the interaction of Notch with its ligand Delta, and for the ability of Fringe to modulate this interaction.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 2EC: 1

>sp|Q6EV69|OFUT1_PANTR GDP-fucose protein O-fucosyltransferase 1 OS=Pan troglodytes GN=POFUT1 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 5/129 (3%)

Query: 5   APQCLGY-RNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEA 63
           +PQC+GY R+     T  +C P ++ + R +K  VR     + ++VATD+ +    L++ 
Sbjct: 264 SPQCVGYSRSTAAPLTMTMCLPDLKEIQRAVKLWVRSL-DAQSVYVATDSESYVPELQQL 322

Query: 64  FKRTEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIKK 123
           FK     +    +   VDL IL QA+HFIGNC+SSFTAFVKR RD++G PSSF+      
Sbjct: 323 FKGKVKVVSLKPEVAQVDLYILGQADHFIGNCVSSFTAFVKRERDLQGRPSSFFGM---D 379

Query: 124 TAQKVKDEL 132
              K++DE 
Sbjct: 380 RPPKLRDEF 388

Catalyzes the reaction that attaches fucose through an O-glycosidic linkage to a conserved serine or threonine residue in EGF domains. Plays a crucial role in Notch signaling.

Pan troglodytes (taxid: 9598)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 1

>sp|Q9H488|OFUT1_HUMAN GDP-fucose protein O-fucosyltransferase 1 OS=Homo sapiens GN=POFUT1 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 5/129 (3%)

Query: 5   APQCLGY-RNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEA 63
           +PQC+GY R+     T  +C P ++ + R +K  VR     + ++VATD+ +    L++ 
Sbjct: 264 SPQCVGYSRSTAAPLTMTMCLPDLKEIQRAVKLWVRSL-DAQSVYVATDSESYVPELQQL 322

Query: 64  FKRTEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIKK 123
           FK     +    +   VDL IL QA+HFIGNC+SSFTAFVKR RD++G PSSF+      
Sbjct: 323 FKGKVKVVSLKPEVAQVDLYILGQADHFIGNCVSSFTAFVKRERDLQGRPSSFFGM---D 379

Query: 124 TAQKVKDEL 132
              K++DE 
Sbjct: 380 RPPKLRDEF 388

Catalyzes the reaction that attaches fucose through an O-glycosidic linkage to a conserved serine or threonine residue in EGF domains. Plays a crucial role in Notch signaling.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 1

>sp|Q6EV70|OFUT1_RAT GDP-fucose protein O-fucosyltransferase 1 OS=Rattus norvegicus GN=Pofut1 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 5/129 (3%)

Query: 5   APQCLGY-RNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEA 63
           +PQC+GY R+     T  +C P ++ + R +K  VR     + +++ATD+ +    +++ 
Sbjct: 271 SPQCVGYSRSTATPLTTTMCLPDLKEIQRAVKLWVRAL-DARSVYIATDSESYVSEIQQL 329

Query: 64  FKRTEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIKK 123
           FK     +    +   +DL IL QA+HFIGNC+SSFTAFVKR RD+ G PSSF  F + +
Sbjct: 330 FKEKVKVVSLKPEVAQIDLYILGQADHFIGNCVSSFTAFVKRERDLHGRPSSF--FGMDR 387

Query: 124 TAQKVKDEL 132
            +Q ++DE 
Sbjct: 388 PSQ-LRDEF 395

Catalyzes the reaction that attaches fucose through an O-glycosidic linkage to a conserved serine or threonine residue in EGF domains. Plays a crucial role in Notch signaling.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 1

>sp|P83337|OFUT1_CRIGR GDP-fucose protein O-fucosyltransferase 1 OS=Cricetulus griseus GN=POFUT1 PE=1 SV=2

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 5/129 (3%)

Query: 5   APQCLGY-RNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEA 63
           +PQC+GY R+     T  +C P +  + R +K  VR     + I++ATD+ +    +++ 
Sbjct: 268 SPQCVGYSRSTATPLTMTMCLPDLNEIQRAVKLWVRAL-NARSIYIATDSESYVPEIQQL 326

Query: 64  FKRTEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIKK 123
           FK     +    +   VDL IL QA+HFIGNC+SSFTAFVKR RD+ G  SSF  F + +
Sbjct: 327 FKEKVKVVSLKPEVAQVDLYILGQADHFIGNCVSSFTAFVKRERDLHGRQSSF--FGMDR 384

Query: 124 TAQKVKDEL 132
            +Q  +DE 
Sbjct: 385 PSQP-RDEF 392

Catalyzes the reaction that attaches fucose through an O-glycosidic linkage to a conserved serine or threonine residue in EGF domains. Plays a crucial role in Notch signaling.

Cricetulus griseus (taxid: 10029)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 1

>sp|Q91ZW2|OFUT1_MOUSE GDP-fucose protein O-fucosyltransferase 1 OS=Mus musculus GN=Pofut1 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 80/130 (61%), Gaps = 7/130 (5%)

Query: 5   APQCLGY-RNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEA 63
           +PQC+GY R+     T  +C P ++ + R +   VR     + +++ATD+ +    +++ 
Sbjct: 269 SPQCVGYSRSTATPLTMTMCLPDLKEIQRAVTLWVRAL-NARSVYIATDSESYVSEIQQL 327

Query: 64  FKRTEIRIVP-SDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIK 122
           FK  ++R+V    +   +DL IL QA+HFIGNC+SSFTAFVKR RD+ G  SSF  F + 
Sbjct: 328 FK-DKVRVVSLKPEVAQIDLYILGQADHFIGNCVSSFTAFVKRERDLHGRQSSF--FGMD 384

Query: 123 KTAQKVKDEL 132
           + +Q ++DE 
Sbjct: 385 RPSQ-LRDEF 393

Catalyzes the reaction that attaches fucose through an O-glycosidic linkage to a conserved serine or threonine residue in EGF domains. Plays a crucial role in Notch signaling.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 1

>sp|Q18014|OFUT1_CAEEL GDP-fucose protein O-fucosyltransferase 1 OS=Caenorhabditis elegans GN=C15C7.7 PE=1 SV=5

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 14/127 (11%)

Query: 3   TNAP-----QCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLN 57
           TN P     QCLG  +  G  T+E+C PS + ++ Q+   V   G  K +FVA+D +++ 
Sbjct: 256 TNRPLFASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGA-KSVFVASDKDHMI 314

Query: 58  EPLKEAFKRTEI---RIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKG--- 111
           + + EA K  EI   R  P D   +  LAI+ +A+ F+GNC+S+F+  VKR RD  G   
Sbjct: 315 DEINEALKPYEIEAHRQEPDDM--YTSLAIMGRADLFVGNCVSTFSHIVKRERDHAGQSP 372

Query: 112 LPSSFWA 118
            PS+F+ 
Sbjct: 373 RPSAFFG 379

Catalyzes the reaction that attaches fucose through an O-glycosidic linkage to a conserved serine or threonine residue in EGF domains. Plays a crucial role in Notch signaling.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
328716208	381	PREDICTED: GDP-fucose protein O-fucosylt	0.969	0.335	0.595	5e-38
270006951	353	hypothetical protein TcasGA2_TC013385 [T	0.969	0.362	0.570	2e-36
312382302	440	hypothetical protein AND_05077 [Anophele	0.954	0.286	0.563	2e-36
91083247	389	PREDICTED: similar to O-fucosyltransfera	0.969	0.329	0.570	3e-36
242006086	351	GDP-fucose protein O-fucosyltransferase	0.962	0.361	0.573	4e-36
383857044	383	PREDICTED: GDP-fucose protein O-fucosylt	0.962	0.331	0.534	3e-35
158287220	399	AGAP011338-PA [Anopheles gambiae str. PE	0.954	0.315	0.541	3e-35
345492153	383	PREDICTED: GDP-fucose protein O-fucosylt	0.962	0.331	0.554	5e-35
350417690	383	PREDICTED: GDP-fucose protein O-fucosylt	0.962	0.331	0.534	6e-35
340712307	383	PREDICTED: GDP-fucose protein O-fucosylt	0.962	0.331	0.534	6e-35

>gi|328716208|ref|XP_003245866.1| PREDICTED: GDP-fucose protein O-fucosyltransferase 1-like [Acyrthosiphon pisum]

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 78/131 (59%), Positives = 103/131 (78%), Gaps = 3/131 (2%)

Query: 4   NAPQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQ-IKYIFVATDNNNLNEPLKE 62
           +APQCLGYRNEYG ATEELC+P+ ETVV+QLKR++R++G+ I  +FVA+DNN+L   L  
Sbjct: 252 SAPQCLGYRNEYGKATEELCYPTFETVVKQLKRLIRKYGKDISTVFVASDNNHLIPELSH 311

Query: 63  AFKRTEIRIVPSDQ-SPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPI 121
           A    +++ V  D+ +PHVDLAIL +A++FIGNCISSF+AFVKR RD  GLP+ FWAFP+
Sbjct: 312 ALSSFDLKTVKYDRDNPHVDLAILGKADYFIGNCISSFSAFVKRERDSNGLPNEFWAFPV 371

Query: 122 KKTAQKVKDEL 132
            +   + KDEL
Sbjct: 372 NQKNNQ-KDEL 381

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006951|gb|EFA03399.1| hypothetical protein TcasGA2_TC013385 [Tribolium castaneum]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 101/135 (74%), Gaps = 7/135 (5%)

Query: 5   APQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQ--IKYIFVATDNNNLNEPLKE 62
           APQCLGYRNE G AT E+C PS  T+++QLKR++++  +  I+ +FV++D+N++ E L +
Sbjct: 219 APQCLGYRNEKGKATPEMCLPSKHTIIKQLKRLIKQSSENPIRAVFVSSDSNHMIEELND 278

Query: 63  AFKRTEIRIVPSD-QSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPI 121
           A KR +IR    D   PH+DLAI+ +AN FIGNCISSF+AFVKR RD KG PSSFWAFP 
Sbjct: 279 ALKRAKIRAFKLDANDPHLDLAIMGRANFFIGNCISSFSAFVKRERDAKGFPSSFWAFPP 338

Query: 122 KKTAQK----VKDEL 132
           +K+A K    VKDEL
Sbjct: 339 EKSAGKKEAQVKDEL 353

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312382302|gb|EFR27809.1| hypothetical protein AND_05077 [Anopheles darlingi]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 97/133 (72%), Gaps = 7/133 (5%)

Query: 4   NAPQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQ------IKYIFVATDNNNLN 57
           ++PQCLGYRNE+G  T E+C PS +T+VRQLKR ++ H +      I+ +FVA+D+N++ 
Sbjct: 297 SSPQCLGYRNEHGQLTAEMCMPSKDTIVRQLKRRIKLHRETAPDNPIRAVFVASDSNHMV 356

Query: 58  EPLKEAFKRTEIRIV-PSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSF 116
             L EA +R E+ +V   D  PH+DLAIL +ANHFIGNCISS+TAFVKR RD KG PSSF
Sbjct: 357 TELNEALRRMEVTVVRHPDTDPHLDLAILGRANHFIGNCISSYTAFVKRERDSKGFPSSF 416

Query: 117 WAFPIKKTAQKVK 129
           WAFP +K   K K
Sbjct: 417 WAFPTEKPTSKPK 429

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083247|ref|XP_973990.1| PREDICTED: similar to O-fucosyltransferase, putative [Tribolium castaneum]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 101/135 (74%), Gaps = 7/135 (5%)

Query: 5   APQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQ--IKYIFVATDNNNLNEPLKE 62
           APQCLGYRNE G AT E+C PS  T+++QLKR++++  +  I+ +FV++D+N++ E L +
Sbjct: 255 APQCLGYRNEKGKATPEMCLPSKHTIIKQLKRLIKQSSENPIRAVFVSSDSNHMIEELND 314

Query: 63  AFKRTEIRIVPSD-QSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPI 121
           A KR +IR    D   PH+DLAI+ +AN FIGNCISSF+AFVKR RD KG PSSFWAFP 
Sbjct: 315 ALKRAKIRAFKLDANDPHLDLAIMGRANFFIGNCISSFSAFVKRERDAKGFPSSFWAFPP 374

Query: 122 KKTAQK----VKDEL 132
           +K+A K    VKDEL
Sbjct: 375 EKSAGKKEAQVKDEL 389

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006086|ref|XP_002423887.1| GDP-fucose protein O-fucosyltransferase 1 precursor, putative [Pediculus humanus corporis] gi|212507133|gb|EEB11149.1| GDP-fucose protein O-fucosyltransferase 1 precursor, putative [Pediculus humanus corporis]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 100/129 (77%), Gaps = 2/129 (1%)

Query: 5   APQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAF 64
           APQC+GY+NE+G AT E+C PS +T+++Q+KRV++   +   +FVA+DNN +   L EA 
Sbjct: 224 APQCVGYQNEFGTATPEMCMPSSKTIIKQIKRVLKTVKEPGAVFVASDNNYMLSELSEAL 283

Query: 65  KRTEIRIVP-SDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIKK 123
           KR E+++      +PHV+LAIL+Q+NHFIGNCISSF+AFVKR RDVKGL SSFWAFP +K
Sbjct: 284 KRFEVKVTNLQPPNPHVELAILAQSNHFIGNCISSFSAFVKRERDVKGLKSSFWAFPTEK 343

Query: 124 TAQKVKDEL 132
             +K+ DEL
Sbjct: 344 K-KKIHDEL 351

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857044|ref|XP_003704016.1| PREDICTED: GDP-fucose protein O-fucosyltransferase 1-like [Megachile rotundata]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 92/129 (71%), Gaps = 2/129 (1%)

Query: 5   APQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAF 64
           APQCLGYRNE G AT  +C P+ + +VR LKRV+R    IK +FVA+DNN + E L +A 
Sbjct: 253 APQCLGYRNERGKATSAMCLPTFDLIVRHLKRVIRNGNDIKSVFVASDNNYMIEELTKAL 312

Query: 65  KRTEIRIVPSDQ--SPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIK 122
            R E+ +   DQ  SPH+DLAIL +AN+FIGNCISSF+AFV R R++KG P+ FW FP +
Sbjct: 313 ARMEVPVFKQDQPASPHLDLAILGRANYFIGNCISSFSAFVAREREIKGYPTFFWGFPTE 372

Query: 123 KTAQKVKDE 131
           +++  +  E
Sbjct: 373 RSSASIMHE 381

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158287220|ref|XP_309312.4| AGAP011338-PA [Anopheles gambiae str. PEST] gi|75911308|gb|ABA29466.1| protein O-fucosyltransferase 1 [Anopheles gambiae] gi|157019546|gb|EAA05278.4| AGAP011338-PA [Anopheles gambiae str. PEST]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/133 (54%), Positives = 97/133 (72%), Gaps = 7/133 (5%)

Query: 4   NAPQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQ------IKYIFVATDNNNLN 57
           ++PQCLGYRNE+G  T ELC P  +T++RQLKR ++ H +      I+ +FVA+D+N++ 
Sbjct: 256 SSPQCLGYRNEHGQLTAELCMPGRDTIIRQLKRQIKLHREAAPDNPIRAVFVASDSNHML 315

Query: 58  EPLKEAFKRTEIRIV-PSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSF 116
             L +A KR ++ +V   D +PH+DLAIL +ANHFIGNCISS++AFVKR RD  G PSSF
Sbjct: 316 GELNDALKRMDVTVVRHPDGNPHLDLAILGRANHFIGNCISSYSAFVKRERDANGFPSSF 375

Query: 117 WAFPIKKTAQKVK 129
           WAFP +K   KVK
Sbjct: 376 WAFPPEKPGAKVK 388

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492153|ref|XP_001602191.2| PREDICTED: GDP-fucose protein O-fucosyltransferase 1-like [Nasonia vitripennis]

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/128 (55%), Positives = 93/128 (72%), Gaps = 1/128 (0%)

Query: 5   APQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAF 64
           APQCLGYRNE G AT+ +C PS E +VR LKRV+R    IK +FVA+DNN +   L +A 
Sbjct: 254 APQCLGYRNERGKATKTMCLPSFEVIVRHLKRVIRNGKDIKSVFVASDNNYMIPELTKAL 313

Query: 65  KRTEIRIVPSDQ-SPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIKK 123
           +R +I++   ++ SPH+DLAIL +AN+FIGNCISSF+AFV R R+VKG P+ FW FP ++
Sbjct: 314 ERMDIKVFKQEENSPHLDLAILGRANYFIGNCISSFSAFVAREREVKGYPTYFWGFPPER 373

Query: 124 TAQKVKDE 131
           T   V  E
Sbjct: 374 TLSSVTHE 381

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417690|ref|XP_003491546.1| PREDICTED: GDP-fucose protein O-fucosyltransferase 1-like [Bombus impatiens]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 91/129 (70%), Gaps = 2/129 (1%)

Query: 5   APQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAF 64
           APQCLGYRNE G AT  +C PS + +VR LKRV+R    IK +FVA+DNN + E L +A 
Sbjct: 253 APQCLGYRNERGKATSAMCLPSFDLIVRHLKRVIRNGNDIKSVFVASDNNYMIEELTKAL 312

Query: 65  KRTEIRIVPSDQ--SPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIK 122
            R E+ +   D   SPH+DLAIL +AN+FIGNCISSF+AFV R R++KG P+ FW FP +
Sbjct: 313 ARMEVPVFKQDSPASPHLDLAILGRANYFIGNCISSFSAFVAREREIKGYPTFFWGFPSE 372

Query: 123 KTAQKVKDE 131
           +++  +  E
Sbjct: 373 RSSSSITHE 381

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712307|ref|XP_003394703.1| PREDICTED: GDP-fucose protein O-fucosyltransferase 1-like [Bombus terrestris]

 Score =  151 bits (382), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 91/129 (70%), Gaps = 2/129 (1%)

Query: 5   APQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAF 64
           APQCLGYRNE G AT  +C PS + +VR LKRV+R    IK +FVA+DNN + E L +A 
Sbjct: 253 APQCLGYRNERGKATSAMCLPSFDLIVRHLKRVIRNGNDIKSVFVASDNNYMIEELTKAL 312

Query: 65  KRTEIRIVPSDQ--SPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIK 122
            R E+ +   D   SPH+DLAIL +AN+FIGNCISSF+AFV R R++KG P+ FW FP +
Sbjct: 313 ARMEVPVFKQDSPASPHLDLAILGRANYFIGNCISSFSAFVAREREIKGYPTFFWGFPSE 372

Query: 123 KTAQKVKDE 131
           +++  +  E
Sbjct: 373 RSSSSITHE 381

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
FB|FBgn0033901	402	O-fut1 "O-fucosyltransferase 1	0.962	0.315	0.492	2.1e-29
UNIPROTKB|B4DUV4	177	POFUT1 "GDP-fucose protein O-f	0.924	0.689	0.410	1.5e-19
UNIPROTKB|Q9H488	388	POFUT1 "GDP-fucose protein O-f	0.924	0.314	0.410	3.2e-19
UNIPROTKB|Q6EV69	388	POFUT1 "GDP-fucose protein O-f	0.924	0.314	0.410	3.2e-19
RGD|1303001	395	Pofut1 "protein O-fucosyltrans	0.924	0.308	0.395	6e-19
UNIPROTKB|Q8AWB4	380	POFUT1 "Uncharacterized protei	0.840	0.292	0.426	8.3e-19
ZFIN|ZDB-GENE-040303-2	395	pofut1 "protein O-fucosyltrans	0.886	0.296	0.390	2.9e-18
UNIPROTKB|Q7YRE7	391	pofut1 "Uncharacterized protei	0.924	0.312	0.395	5.9e-18
UNIPROTKB|P83337	392	POFUT1 "GDP-fucose protein O-f	0.924	0.311	0.403	1e-17
UNIPROTKB|F1PVL7	391	POFUT1 "Uncharacterized protei	0.924	0.312	0.403	1.3e-17

FB|FBgn0033901 O-fut1 "O-fucosyltransferase 1" [Drosophila melanogaster (taxid:7227)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 68/138 (49%), Positives = 90/138 (65%)

Query:     5 APQCLGYRNEYGVATEELCFPSVETVVRQLKRVVRE------HGQIKYIFVATDNNNLNE 58
             +PQCLGY+NE G    ELC PS E ++RQLKR ++         +IK +FVA+D+N++  
Sbjct:   266 SPQCLGYKNERGALYPELCMPSKEAIIRQLKRTIKNVRQTQPDNEIKSVFVASDSNHMIG 325

Query:    59 PLKEAFKRTEIRI--VPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSF 116
              L  A  R  I +  +P D  P++DLAIL Q+NHFIGNCISS++AF KR RDV G PS F
Sbjct:   326 ELNTALSRMGISVHKLPEDD-PYLDLAILGQSNHFIGNCISSYSAFEKRERDVHGFPSYF 384

Query:   117 WAFPIKKTAQ--KVKDEL 132
             W FP +K  +   V +EL
Sbjct:   385 WGFPKEKDRKHTNVHEEL 402

GO:0008417 "fucosyltransferase activity" evidence=ISS;NAS;IDA

GO:0030173 "integral to Golgi membrane" evidence=ISS

GO:0006493 "protein O-linked glycosylation" evidence=ISS

GO:0007399 "nervous system development" evidence=IMP

GO:0008593 "regulation of Notch signaling pathway" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030163 "protein catabolic process" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0005112 "Notch binding" evidence=IDA

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IMP

GO:0006897 "endocytosis" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|B4DUV4 POFUT1 "GDP-fucose protein O-fucosyltransferase 1" [Homo sapiens (taxid:9606)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 53/129 (41%), Positives = 80/129 (62%)

Query:     5 APQCLGY-RNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEA 63
             +PQC+GY R+     T  +C P ++ + R +K  VR     + ++VATD+ +    L++ 
Sbjct:    53 SPQCVGYSRSTAAPLTMTMCLPDLKEIQRAVKLWVRSL-DAQSVYVATDSESYVPELQQL 111

Query:    64 FKRTEIRIVP-SDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIK 122
             FK  ++++V    +   VDL IL QA+HFIGNC+SSFTAFVKR RD++G PSSF+     
Sbjct:   112 FKG-KVKVVSLKPEVAQVDLYILGQADHFIGNCVSSFTAFVKRERDLQGRPSSFFGMD-- 168

Query:   123 KTAQKVKDE 131
                 K++DE
Sbjct:   169 -RPPKLRDE 176

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

UNIPROTKB|Q9H488 POFUT1 "GDP-fucose protein O-fucosyltransferase 1" [Homo sapiens (taxid:9606)]

 Score = 233 (87.1 bits), Expect = 3.2e-19, P = 3.2e-19
 Identities = 53/129 (41%), Positives = 80/129 (62%)

Query:     5 APQCLGY-RNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEA 63
             +PQC+GY R+     T  +C P ++ + R +K  VR     + ++VATD+ +    L++ 
Sbjct:   264 SPQCVGYSRSTAAPLTMTMCLPDLKEIQRAVKLWVRSL-DAQSVYVATDSESYVPELQQL 322

Query:    64 FKRTEIRIVP-SDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIK 122
             FK  ++++V    +   VDL IL QA+HFIGNC+SSFTAFVKR RD++G PSSF+     
Sbjct:   323 FKG-KVKVVSLKPEVAQVDLYILGQADHFIGNCVSSFTAFVKRERDLQGRPSSFFGMD-- 379

Query:   123 KTAQKVKDE 131
                 K++DE
Sbjct:   380 -RPPKLRDE 387

GO:0006004 "fucose metabolic process" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0008417 "fucosyltransferase activity" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006493 "protein O-linked glycosylation" evidence=IDA

GO:0046922 "peptide-O-fucosyltransferase activity" evidence=IDA;TAS

GO:0016266 "O-glycan processing" evidence=TAS

GO:0009790 "embryo development" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0036066 "protein O-linked fucosylation" evidence=IDA

GO:0007219 "Notch signaling pathway" evidence=NAS;TAS

UNIPROTKB|Q6EV69 POFUT1 "GDP-fucose protein O-fucosyltransferase 1" [Pan troglodytes (taxid:9598)]

 Score = 233 (87.1 bits), Expect = 3.2e-19, P = 3.2e-19
 Identities = 53/129 (41%), Positives = 80/129 (62%)

Query:     5 APQCLGY-RNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEA 63
             +PQC+GY R+     T  +C P ++ + R +K  VR     + ++VATD+ +    L++ 
Sbjct:   264 SPQCVGYSRSTAAPLTMTMCLPDLKEIQRAVKLWVRSL-DAQSVYVATDSESYVPELQQL 322

Query:    64 FKRTEIRIVP-SDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIK 122
             FK  ++++V    +   VDL IL QA+HFIGNC+SSFTAFVKR RD++G PSSF+     
Sbjct:   323 FKG-KVKVVSLKPEVAQVDLYILGQADHFIGNCVSSFTAFVKRERDLQGRPSSFFGMD-- 379

Query:   123 KTAQKVKDE 131
                 K++DE
Sbjct:   380 -RPPKLRDE 387

GO:0006493 "protein O-linked glycosylation" evidence=ISS

GO:0008417 "fucosyltransferase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

RGD|1303001 Pofut1 "protein O-fucosyltransferase 1" [Rattus norvegicus (taxid:10116)]

 Score = 231 (86.4 bits), Expect = 6.0e-19, P = 6.0e-19
 Identities = 51/129 (39%), Positives = 82/129 (63%)

Query:     5 APQCLGY-RNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEA 63
             +PQC+GY R+     T  +C P ++ + R +K  VR     + +++ATD+ +    +++ 
Sbjct:   271 SPQCVGYSRSTATPLTTTMCLPDLKEIQRAVKLWVRAL-DARSVYIATDSESYVSEIQQL 329

Query:    64 FKRTEIRIVP-SDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIK 122
             FK  ++++V    +   +DL IL QA+HFIGNC+SSFTAFVKR RD+ G PSSF  F + 
Sbjct:   330 FKE-KVKVVSLKPEVAQIDLYILGQADHFIGNCVSSFTAFVKRERDLHGRPSSF--FGMD 386

Query:   123 KTAQKVKDE 131
             + +Q ++DE
Sbjct:   387 RPSQ-LRDE 394

GO:0001525 "angiogenesis" evidence=IEA;ISO

GO:0001756 "somitogenesis" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA

GO:0006004 "fucose metabolic process" evidence=IEA

GO:0006493 "protein O-linked glycosylation" evidence=ISO;ISS

GO:0007219 "Notch signaling pathway" evidence=IEA;ISO

GO:0007399 "nervous system development" evidence=IEA;ISO

GO:0007507 "heart development" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008417 "fucosyltransferase activity" evidence=ISO;ISS

GO:0016020 "membrane" evidence=ISO;ISS

GO:0036066 "protein O-linked fucosylation" evidence=ISO

GO:0046922 "peptide-O-fucosyltransferase activity" evidence=IEA;ISO

UNIPROTKB|Q8AWB4 POFUT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 229 (85.7 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 49/115 (42%), Positives = 75/115 (65%)

Query:     5 APQCLGYRNEYGVA-TEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEA 63
             +PQC+GY     V  T ++C P ++ + R LK  V++    K I++ATD+    + +++ 
Sbjct:   256 SPQCVGYDRSTAVPLTMDMCLPDLKEIKRALKVWVKKT-VAKSIYIATDSEPYTKEIQQF 314

Query:    64 FKRTEIRIVP-SDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFW 117
             F+  +I++V    +   +DL IL Q++HFIGNC+SSFTAFVKR RDV G PSSF+
Sbjct:   315 FQG-KIKVVSLQPEVAQIDLYILGQSDHFIGNCVSSFTAFVKRERDVHGKPSSFF 368

GO:0001525 "angiogenesis" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0036066 "protein O-linked fucosylation" evidence=IEA

GO:0008417 "fucosyltransferase activity" evidence=ISS

ZFIN|ZDB-GENE-040303-2 pofut1 "protein O-fucosyltransferase 1" [Danio rerio (taxid:7955)]

 Score = 225 (84.3 bits), Expect = 2.9e-18, P = 2.9e-18
 Identities = 48/123 (39%), Positives = 78/123 (63%)

Query:     5 APQCLGYRNEYGVA-TEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEA 63
             +PQC+GY  +  +  T  +C P +  + R +K  V+  G  + +++ATD+ +    +++ 
Sbjct:   269 SPQCVGYDRQTALPLTMNMCLPDLTEIRRAVKLWVKNTGA-QSVYIATDSESHTTEIQKL 327

Query:    64 FKRTEIRIVP-SDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWA--FP 120
             FK  ++++V     +  VDL IL QA+HFIGNC+SSF+AFVKR R++ G PSSF+   +P
Sbjct:   328 FKG-KVKVVSLQPDTAQVDLYILGQADHFIGNCVSSFSAFVKRERNIHGRPSSFFGLDYP 386

Query:   121 IKK 123
              KK
Sbjct:   387 GKK 389

GO:0046922 "peptide-O-fucosyltransferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|Q7YRE7 pofut1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 222 (83.2 bits), Expect = 5.9e-18, P = 5.9e-18
 Identities = 51/129 (39%), Positives = 80/129 (62%)

Query:     5 APQCLGY-RNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEA 63
             +PQC+GY R+     T  +C P ++ + R LK  V      + +++ATD+ +    +++ 
Sbjct:   267 SPQCVGYSRHTTAPLTMTMCLPDLKEIRRALKLWVTALNA-QSVYIATDSESYLPEIQQL 325

Query:    64 FKRTEIRIVP-SDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIK 122
             FK  ++++V    +   +DL IL QA+HFIGNC+SSFTAFVKR RD+ G PSSF  F + 
Sbjct:   326 FKG-KVKVVSLKPEVAQIDLYILGQADHFIGNCVSSFTAFVKRERDLHGRPSSF--FGMD 382

Query:   123 KTAQKVKDE 131
             +  Q ++DE
Sbjct:   383 RPPQ-LRDE 390

GO:0008417 "fucosyltransferase activity" evidence=ISS

GO:0006493 "protein O-linked glycosylation" evidence=ISS

GO:0036066 "protein O-linked fucosylation" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

UNIPROTKB|P83337 POFUT1 "GDP-fucose protein O-fucosyltransferase 1" [Cricetulus griseus (taxid:10029)]

 Score = 220 (82.5 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 52/129 (40%), Positives = 79/129 (61%)

Query:     5 APQCLGY-RNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEA 63
             +PQC+GY R+     T  +C P +  + R +K  VR     + I++ATD+ +    +++ 
Sbjct:   268 SPQCVGYSRSTATPLTMTMCLPDLNEIQRAVKLWVRALNA-RSIYIATDSESYVPEIQQL 326

Query:    64 FKRTEIRIVP-SDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIK 122
             FK  ++++V    +   VDL IL QA+HFIGNC+SSFTAFVKR RD+ G  SSF  F + 
Sbjct:   327 FKE-KVKVVSLKPEVAQVDLYILGQADHFIGNCVSSFTAFVKRERDLHGRQSSF--FGMD 383

Query:   123 KTAQKVKDE 131
             + +Q  +DE
Sbjct:   384 RPSQP-RDE 391

GO:0006486 "protein glycosylation" evidence=IDA

GO:0016740 "transferase activity" evidence=IDA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IDA

GO:0036066 "protein O-linked fucosylation" evidence=IDA

GO:0046922 "peptide-O-fucosyltransferase activity" evidence=IDA

UNIPROTKB|F1PVL7 POFUT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 219 (82.2 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 52/129 (40%), Positives = 80/129 (62%)

Query:     5 APQCLGY-RNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEA 63
             +PQC+GY R+     T  +C P ++ + R +K  V E    + +++ATD+ +    ++E 
Sbjct:   267 SPQCVGYSRSTAAPLTMTMCLPDLKEIRRAVKLWV-EALNAQSVYIATDSESYVPEIQEL 325

Query:    64 FKRTEIRIVP-SDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIK 122
             FK  ++++V        +DL IL QA+HFIGNC+SSFTAFVKR RD++G  SSF  F + 
Sbjct:   326 FKG-KVKVVSLKPDVAQIDLYILGQADHFIGNCVSSFTAFVKRERDLQGRLSSF--FGMD 382

Query:   123 KTAQKVKDE 131
             K  Q ++DE
Sbjct:   383 KPPQ-LRDE 390

GO:0036066 "protein O-linked fucosylation" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008417 "fucosyltransferase activity" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9V6X7	OFUT1_DROME	2, ., 4, ., 1, ., 2, 2, 1	0.5118	0.8939	0.2935	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	132
cd11302	347	cd11302, O-FucT-1, GDP-fucose protein O-fucosyltra	3e-58
pfam10250	315	pfam10250, O-FucT, GDP-fucose protein O-fucosyltra	1e-22
cd11296	206	cd11296, O-FucT_like, GDP-fucose protein O-fucosyl	8e-16
cd11298	374	cd11298, O-FucT-2, GDP-fucose protein O-fucosyltra	3e-07
cd11548	287	cd11548, NodZ_like, Alpha 1,6-fucosyltransferase s	0.001

>gnl|CDD|211388 cd11302, O-FucT-1, GDP-fucose protein O-fucosyltransferase 1

 Score =  183 bits (466), Expect = 3e-58
 Identities = 63/117 (53%), Positives = 88/117 (75%), Gaps = 2/117 (1%)

Query: 5   APQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAF 64
           +PQCLGY NE G  T+E+C PS E +++Q+KR V++    K +F+ATDN+++ E LK+A 
Sbjct: 232 SPQCLGYGNERGTLTKEMCLPSKEEILKQVKRAVKKIK-AKSVFIATDNDHMIEELKKAL 290

Query: 65  KRTEIRIVPSDQS-PHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFP 120
           K  ++++V  D   P +DLAIL +A+HFIGNC+SSF+AFVKR RDV GLPSSF+ F 
Sbjct: 291 KSLKVKVVHLDPDEPQIDLAILGKADHFIGNCVSSFSAFVKRERDVAGLPSSFFGFN 347

The protein O-fucosyltransferase 1 (Ofut1 or O-FucT-1) adds O-fucose to EGF (epidermal growth factor-like) repeats. The O-fucsosylation of the Notch receptor signaling protein is dependent on this enzyme, which requires GDP-fucose as a substrate. O-fucose residues added to the target of O-FucT-1 may be further elongated by other glycosyltransferases. On top of O-fucosylation, O-FucT-1 may have other functions such as the regulation of the Notch receptor exit from the ER. Six highly conserved cysteines are present in O-FucT-1, which is a soluble ER protein, as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and C. elegans. Both features are characteristic of several glycosyltransferase families. The membrane-bound pre-protein is released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese. O-FucT-1 is similar to family 1 glycosyltransferases (GT1). Length = 347

>gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase

 Score = 89.7 bits (223), Expect = 1e-22
 Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 14/125 (11%)

Query: 2   ETNAPQCLGYRNEYGVA-TEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNE-- 58
              +P+C+GY+         E C P     V  L R +        +++ATD     E  
Sbjct: 189 LLASPRCVGYKRIDSEELRREGCCPLTPEEVGLLLRALGFPKD-TSVYIATDEIYGRELE 247

Query: 59  PLKEAFKR----------TEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRD 108
           PLK  F             E+          +D  I   A+ FIG C S+F+AFVKR R 
Sbjct: 248 PLKAEFPNLVTKESLASKEELAPFKGGGLAALDYIICLHADVFIGTCGSTFSAFVKRERR 307

Query: 109 VKGLP 113
             G P
Sbjct: 308 YLGFP 312

This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present in O-FucT-1 as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and C. elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese. Length = 315

>gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins

 Score = 70.1 bits (172), Expect = 8e-16
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 19/122 (15%)

Query: 8   CLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRT 67
              +  ++     E C  S E +  ++K ++ E   +K ++VATD  +  E L+E  ++ 
Sbjct: 87  ECCHLAKWMGEYLEECLLSAEEIAEKIKELMAERK-LKVVYVATDEADR-EELREELRKA 144

Query: 68  EIRIV-----------------PSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVK 110
            IR+V                  +     VD  I S+A+ FIG   S+F++ V   R  +
Sbjct: 145 GIRVVTKDDLLEDAELLELEKLDNYLLSLVDQEICSRADVFIGTGFSTFSSNVALLRRWR 204

Query: 111 GL 112
           G 
Sbjct: 205 GK 206

O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 206

>gnl|CDD|211384 cd11298, O-FucT-2, GDP-fucose protein O-fucosyltransferase 2

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 14/102 (13%)

Query: 25  PSVETVVRQLKRVVREHGQIKYIFVATDNNN--LNEPLKEAFKRTEI-RIVPSDQSPH-- 79
           PS++   +Q+  ++++   +K +F+ATD     L E LK+  K+ ++ R  P+ +     
Sbjct: 265 PSLKGAAKQILNLMKKLK-LKKVFIATDAKKEELEE-LKKLLKKLKVVRYEPTLEELEKL 322

Query: 80  -------VDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPS 114
                  +D  I + A +FIG   S+F+  ++  R++ G P 
Sbjct: 323 KDGGVAIIDQWICAHARYFIGTKESTFSFRIQEEREILGFPP 364

O-FucT-2 adds O-fucose to thrombospondin type 1 repeats (TSRs), and appears conserved in bilateria. The O-fucosylation of TSRs appears to play a role in regulating secretion of metalloproteases of the ADAMTS superfamily. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 374

>gnl|CDD|211389 cd11548, NodZ_like, Alpha 1,6-fucosyltransferase similar to Bradyrhizobium NodZ

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 19/90 (21%)

Query: 27  VETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPH------- 79
           +  VV  L++ V  H     IF+ATD+  + + LK  F    + + P +  PH       
Sbjct: 188 LHRVVDALRKKVALHKDAT-IFLATDSAEVKDELKRLFPD--VVVTPKEFPPHGERSASD 244

Query: 80  ---------VDLAILSQANHFIGNCISSFT 100
                    +D+ +L++ +H IG+  S+F+
Sbjct: 245 GLEGAEDALIDMYLLARCDHLIGSRFSTFS 274

Bradyrhizobium NodZ is an alpha 1,6-fucosyltransferase involved in the biosynthesis of the nodulation factor, a lipo-chitooligosaccharide formed by three-to-six beta-1,4-linked N-acetyl-d-glucosamine (GlcNAc) residues and a fatty acid acyl group attached to the nitrogen atom at the non-reducing end. NodZ transfers L-fucose from the GDP-beta-L-fucose donor to the reducing residue of the chitin oligosaccharide backbone, before the attachment of a fatty acid group. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 287

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
KOG3849|consensus	386		100.0
PF10250	351	O-FucT: GDP-fucose protein O-fucosyltransferase; I	99.87
PF05830	321	NodZ: Nodulation protein Z (NodZ); InterPro: IPR00	97.17
PF01531	298	Glyco_transf_11: Glycosyl transferase family 11; I	95.95
PRK07561	859	DNA topoisomerase I subunit omega; Validated	94.41
PF03254	476	XG_FTase: Xyloglucan fucosyltransferase; InterPro:	90.49
PRK09860	383	putative alcohol dehydrogenase; Provisional	89.9
COG2984	322	ABC-type uncharacterized transport system, peripla	88.49
KOG3705|consensus	580		88.03
PRK08780	780	DNA topoisomerase I; Provisional	87.69
PRK07283	98	hypothetical protein; Provisional	85.9
PRK06599	675	DNA topoisomerase I; Validated	85.53
cd06334	351	PBP1_ABC_ligand_binding_like_1 Type I periplasmic	85.18
PF08821	107	CGGC: CGGC domain; InterPro: IPR014925 Proteins in	84.86
cd08192	370	Fe-ADH7 Iron-containing alcohol dehydrogenases-lik	84.52
cd08193	376	HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyze	84.0
cd08185	380	Fe-ADH1 Iron-containing alcohol dehydrogenases-lik	83.75
PRK06683	82	hypothetical protein; Provisional	83.72
cd06382	327	PBP1_iGluR_Kainate N-terminal leucine/isoleucine/v	82.72
cd08181	357	PPD-like 1,3-propanediol dehydrogenase-like (PPD).	82.67
cd06337	357	PBP1_ABC_ligand_binding_like_4 Type I periplasmic	82.34
PRK10624	382	L-1,2-propanediol oxidoreductase; Provisional	82.3
PF02348	217	CTP_transf_3: Cytidylyltransferase; InterPro: IPR0	81.95
COG1454	377	EutG Alcohol dehydrogenase, class IV [Energy produ	81.78
cd06379	377	PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/	81.09
cd06336	347	PBP1_ABC_ligand_binding_like_3 Type I periplasmic	81.03
cd08191	386	HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyz	80.84
cd06349	340	PBP1_ABC_ligand_binding_like_14 Type I periplasmic	80.82
PRK15454	395	ethanol dehydrogenase EutG; Provisional	80.57
PRK13600	84	putative ribosomal protein L7Ae-like; Provisional	80.43
cd08188	377	Fe-ADH4 Iron-containing alcohol dehydrogenases-lik	80.42
TIGR02638	379	lactal_redase lactaldehyde reductase. This clade o	80.39
cd08189	374	Fe-ADH5 Iron-containing alcohol dehydrogenases-lik	80.21
cd06346	312	PBP1_ABC_ligand_binding_like_11 Type I periplasmic	80.2

>KOG3849|consensus

Probab=100.00  E-value=7.8e-52  Score=344.61  Aligned_cols=127  Identities=46%  Similarity=0.736  Sum_probs=124.2

Q ss_pred             ccCCcccccccCCccccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CCchHHH
Q psy9357           3 TNAPQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQSPHVD   81 (132)
Q Consensus         3 ~~spqC~g~~~e~~~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~~~~vD   81 (132)
                      ||||||+||.++.+.+|+++|.||+++|++||+++++.++++++||||||++||++||+++|++++++|+++ ||++++|
T Consensus       259 fASpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~dakSVfVAsDs~hmi~Eln~aL~~~~i~vh~l~pdd~y~d  338 (386)
T KOG3849|consen  259 FASPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIGDAKSVFVASDSDHMIDELNEALKPYEIEVHRLEPDDMYTD  338 (386)
T ss_pred             ccChhhccccccccccchhhhCccHHHHHHHHHHHHhhhcccceEEEeccchhhhHHHHHhhcccceeEEecCcccchhh
Confidence            899999999999999999999999999999999999999679999999999999999999999999999999 8999999


Q ss_pred             HHHHhhcCeeeecceeecchhhhhhhhcCCCCCCcccCCCCccccccccCC
Q psy9357          82 LAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIKKTAQKVKDEL  132 (132)
Q Consensus        82 l~Il~~A~~FIGNcvSSFTa~V~reR~~~G~ps~F~g~~~~~~~~~~~~el  132 (132)
                      |+|+|||||||||||||||+|||||||..|+||.|||++.+.   +.|+||
T Consensus       339 LaIlGqadhFiGNCvSsfsafvKRERD~~GrPS~FfG~dr~~---k~h~el  386 (386)
T KOG3849|consen  339 LAILGQADHFIGNCVSSFSAFVKRERDHAGRPSAFFGIDRPV---KRHIEL  386 (386)
T ss_pred             hhhhcccchhhhhhHHHHHHHHhhhhcccCCcchhcccCCCc---cccccC
Confidence            999999999999999999999999999999999999999988   899997

>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats

Probab=99.87  E-value=1.1e-22  Score=166.27  Aligned_cols=111  Identities=28%  Similarity=0.483  Sum_probs=76.9

Q ss_pred             CccCCcccccccCCc-cccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhcc----CCcEEE
Q psy9357           2 ETNAPQCLGYRNEYG-VATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKR----TEIRIV   72 (132)
Q Consensus         2 ~~~spqC~g~~~e~~-~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~----~~~~vv   72 (132)
                      .|+++||.+....+. ..+..+|+|+.++++.+|++++... +.+.||||||..    ..++.|++.|+.    ..+...
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~-~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~  298 (351)
T PF10250_consen  220 LLASPRCWGKKSINPEKKRRNGCCPSTPQEAKQILRALGKN-NTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSH  298 (351)
T ss_dssp             -TTTHHHH-GGGTT-----HHHHS--HHHHHHHHHHHHHHH-T-SEEEEEESS-----------HHHHHHHHGGGT--EE
T ss_pred             HHHHhHhhccccccchhhhhcCCCCChHHHHHHHHHHhccC-CCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCH
Confidence            589999998744443 7888999999999999999999998 999999999983    245666666653    222222


Q ss_pred             e-C-----CCchHHHHHHHhhcCeeeecceeecchhhhhhhhcCCCC
Q psy9357          73 P-S-----DQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLP  113 (132)
Q Consensus        73 ~-l-----~~~~~vDl~Il~~A~~FIGNcvSSFTa~V~reR~~~G~p  113 (132)
                      . +     ...++||++||++|++|||||.||||++|.++|..+|+|
T Consensus       299 ~~~~~~~~~~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~  345 (351)
T PF10250_consen  299 EELEPLNDDQLAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKP  345 (351)
T ss_dssp             --S-----S--HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred             HHhhhccccchhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCC
Confidence            2 2     228999999999999999999999999999999999987

Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.

>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation

Probab=97.17  E-value=0.00053  Score=58.52  Aligned_cols=60  Identities=25%  Similarity=0.390  Sum_probs=41.8

Q ss_pred             CcEEEEecCCcccHHHHHHhhccCCcEEEe---------C--CC-------chHHHHHHHhhcCeeee-cceeecchhhh
Q psy9357          44 IKYIFVATDNNNLNEPLKEAFKRTEIRIVP---------S--DQ-------SPHVDLAILSQANHFIG-NCISSFTAFVK  104 (132)
Q Consensus        44 lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~---------l--~~-------~~~vDl~Il~~A~~FIG-NcvSSFTa~V~  104 (132)
                      -..||||||+..-++++++.|+.. +.+.+         |  ++       .+-|||++|++.||.|- .--|+||.-..
T Consensus       214 ~~~IFLATDSaeVid~fr~~FPdi-iti~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~LLSrCD~LIr~~ptS~Fsr~as  292 (321)
T PF05830_consen  214 PVRIFLATDSAEVIDQFRKKFPDI-ITIPKQFPASQAGPLHSAAVGIEGGESALIDMYLLSRCDYLIRFPPTSAFSRYAS  292 (321)
T ss_dssp             -EEEEEEES-HHHHHHHHHHSTTE-E----------------HHHHHHHHHHHHHHHHHHTTSSEEEEESTT-GGGHHHH
T ss_pred             CeeEEEecCcHHHHHHHHHHCCCe-EEcccccCCCCCCcCcccccccchHHHHHHHHHHHHhCCeEEEcCCCchhhhHHH
Confidence            356999999999999999999741 12211         1  11       67899999999999994 77777875443

NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.

>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=95.95  E-value=0.054  Score=44.70  Aligned_cols=80  Identities=18%  Similarity=0.203  Sum_probs=56.2

Q ss_pred             cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccC-CcEEEeCCCchHHHHHHHhhcCeeeecceeecch
Q psy9357          23 CFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRT-EIRIVPSDQSPHVDLAILSQANHFIGNCISSFTA  101 (132)
Q Consensus        23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~-~~~vv~l~~~~~vDl~Il~~A~~FIGNcvSSFTa  101 (132)
                      -..+.+=..+.|....++. +--.+||-||..+|..+.   |... +..++..+..+..||+++++++|+|+.- ||||-
T Consensus       186 ~~~~~~Yy~~Ai~~i~~~~-~~~~f~ifSDD~~w~k~~---l~~~~~~~~~~~~~~~~~Dl~lms~C~~~Iisn-STFsw  260 (298)
T PF01531_consen  186 GICDKDYYKKAIEYIREKV-KNPKFFIFSDDIEWCKEN---LKFSNGDVYFSGNNSPYEDLYLMSQCKHFIISN-STFSW  260 (298)
T ss_pred             CCCCHHHHHHHHHHHHHhC-CCCEEEEEcCCHHHHHHH---HhhcCCcEEEECCCCHHHHHHHHHhCCcEEECC-ChHHH
Confidence            4556666667777776666 556788899988787642   3221 2223333568999999999999999995 99997


Q ss_pred             hhhhhh
Q psy9357         102 FVKRHR  107 (132)
Q Consensus       102 ~V~reR  107 (132)
                      -..-.-
T Consensus       261 W~a~L~  266 (298)
T PF01531_consen  261 WAAYLS  266 (298)
T ss_pred             HHHHHC
Confidence            766554

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane

>PRK07561 DNA topoisomerase I subunit omega; Validated

Probab=94.41  E-value=0.09  Score=49.75  Aligned_cols=94  Identities=22%  Similarity=0.422  Sum_probs=62.1

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhccC--CcEEEeC-----------------CCchHH
Q psy9357          24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKRT--EIRIVPS-----------------DQSPHV   80 (132)
Q Consensus        24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~~--~~~vv~l-----------------~~~~~v   80 (132)
                      .|+.+.+++.|+++++   ++..||+|||.+.+    .-+|.+.|...  .++.+.+                 .+..-+
T Consensus        70 ~~~k~~~~~~lk~~~k---~ad~iilAtD~DREGE~I~~~i~~~l~~~~~~v~Ri~f~~iT~~aI~~A~~n~~~~~~~l~  146 (859)
T PRK07561         70 LPGKEKVVSELKKAAK---DADELYLATDPDREGEAIAWHLLEVLGGDDVPVKRVVFNEITKNAIQEAFENPRELDINLV  146 (859)
T ss_pred             CccHHHHHHHHHHHHh---cCCEEEECCCCCccchHHHHHHHHHhCCCCCCeEEEEEccCCHHHHHHHHhCcccCCHHHH
Confidence            4778889999999886   56899999999873    33466666522  2333321                 113444


Q ss_pred             HHHHHhhc-Ceeeecceee---------cch----------hhhhhhhcCCC-CCCcccCC
Q psy9357          81 DLAILSQA-NHFIGNCISS---------FTA----------FVKRHRDVKGL-PSSFWAFP  120 (132)
Q Consensus        81 Dl~Il~~A-~~FIGNcvSS---------FTa----------~V~reR~~~G~-ps~F~g~~  120 (132)
                      |-..++|. |..||=-+|-         +|+          -|.|||++..| |..||.+.
T Consensus       147 ~A~~aRr~lD~lvG~~lS~~l~~~~~~~lSaGRVQsp~L~lIv~Re~eI~~F~p~~yw~i~  207 (859)
T PRK07561        147 NAQQARRFLDRLVGYMVSPLLWKKIARGLSAGRVQSVAVRLIVEREREIEAFVPEEYWDIH  207 (859)
T ss_pred             HHHHHHHHHHHHhhhhcCHHHHHhhccCCCcccchhhhhHHHHHHHHHHHhcCCCccEEEE
Confidence            55555554 7777776663         222          34899999997 78999874

>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants

Probab=90.49  E-value=0.44  Score=42.91  Aligned_cols=64  Identities=13%  Similarity=0.207  Sum_probs=51.3

Q ss_pred             CCcEEEEecCCcccHHHHHHhhccC----C--cEEEeC--------CC-----chHHHHHHHhhcCeeeecceeecchhh
Q psy9357          43 QIKYIFVATDNNNLNEPLKEAFKRT----E--IRIVPS--------DQ-----SPHVDLAILSQANHFIGNCISSFTAFV  103 (132)
Q Consensus        43 ~lk~VfIaTD~~~~~~eLk~~l~~~----~--~~vv~l--------~~-----~~~vDl~Il~~A~~FIGNcvSSFTa~V  103 (132)
                      +.++|+|++....+-++|+...-+.    |  |.|+..        .+     .|-+|||+|+-+|+.|=+.+|||-.-.
T Consensus       353 ~~kaVlVtSL~~~yye~lr~~Y~~~~t~tGe~V~V~QpShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVTS~~STFGYVA  432 (476)
T PF03254_consen  353 KSKAVLVTSLYSEYYEKLRNMYWEHPTVTGEVVGVHQPSHEEYQQFGDNMHNQKALAEMYLLSLSDVLVTSGWSTFGYVA  432 (476)
T ss_pred             ceEEEEEEeCCHHHHHHHHHHHhcCCCcCCcEEEEECCCCcccccccccchHHHHHHHHHHHHhccceEecCCCCchhHH
Confidence            7789999999999999999988643    2  344431        11     688999999999999999999999877


Q ss_pred             hhh
Q psy9357         104 KRH  106 (132)
Q Consensus       104 ~re  106 (132)
                      +=.
T Consensus       433 qgL  435 (476)
T PF03254_consen  433 QGL  435 (476)
T ss_pred             Hhh
Confidence            543

Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane

>PRK09860 putative alcohol dehydrogenase; Provisional

Probab=89.90  E-value=1.3  Score=37.90  Aligned_cols=67  Identities=12%  Similarity=0.117  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeeec
Q psy9357          29 TVVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIGN   94 (132)
Q Consensus        29 ~I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIGN   94 (132)
                      ..++++...++++ +.++++|-||..    .+++++++.|++.++.++.+      |.    ...++++--.++|..||=
T Consensus        17 g~~~~l~~~~~~~-g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~Iiai   95 (383)
T PRK09860         17 DSLTDAMNMMADY-GFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISL   95 (383)
T ss_pred             CHHHHHHHHHHhc-CCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEe
Confidence            4667788888888 899999999863    37899999999877765543      22    345555557789999976


Q ss_pred             ce
Q psy9357          95 CI   96 (132)
Q Consensus        95 cv   96 (132)
                      |-
T Consensus        96 GG   97 (383)
T PRK09860         96 GG   97 (383)
T ss_pred             CC
Confidence            65

>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]

Probab=88.49  E-value=2  Score=37.09  Aligned_cols=80  Identities=16%  Similarity=0.264  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHhCCCcEE-EE-ecCC--c-ccHHHHHHhhccCCcEEEeC-----CCchHHHHHHHhhcCeeeecc---
Q psy9357          29 TVVRQLKRVVREHGQIKYI-FV-ATDN--N-NLNEPLKEAFKRTEIRIVPS-----DQSPHVDLAILSQANHFIGNC---   95 (132)
Q Consensus        29 ~I~~~ik~~~~~~~~lk~V-fI-aTD~--~-~~~~eLk~~l~~~~~~vv~l-----~~~~~vDl~Il~~A~~FIGNc---   95 (132)
                      .+.+++...-+-.+++|+| ++ .++.  + ..++||++.++..|++|+..     .|.+..=..+.++.|++.+.+   
T Consensus       144 ~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~  223 (322)
T COG2984         144 PVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNL  223 (322)
T ss_pred             hHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchH
Confidence            3445554444444689998 33 4432  2 37999999999999999986     458888888889999999966   


Q ss_pred             -eeecchhhhhhhh
Q psy9357          96 -ISSFTAFVKRHRD  108 (132)
Q Consensus        96 -vSSFTa~V~reR~  108 (132)
                       +|.+++.++.-+.
T Consensus       224 i~s~~~~l~~~a~~  237 (322)
T COG2984         224 IVSAIESLLQVANK  237 (322)
T ss_pred             HHHHHHHHHHHHHH
Confidence             6778887765543

>KOG3705|consensus

Probab=88.03  E-value=0.25  Score=44.40  Aligned_cols=82  Identities=17%  Similarity=0.275  Sum_probs=55.8

Q ss_pred             CCCHHHHHHHHHHHHHHh-----CCCcEEEEecCCcccHHHHHHhhccCCcEEEe---------C----CC----chHHH
Q psy9357          24 FPSVETVVRQLKRVVREH-----GQIKYIFVATDNNNLNEPLKEAFKRTEIRIVP---------S----DQ----SPHVD   81 (132)
Q Consensus        24 ~Ps~~~I~~~ik~~~~~~-----~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~---------l----~~----~~~vD   81 (132)
                      +-++++-..-+..+-+-+     +..|.||+|||-+.-++|-|...+.+  +|+.         +    .|    .-++|
T Consensus       381 fH~~eEYM~~vE~~f~~le~rg~~~~rRiflAsDDp~vv~EAk~kYPnY--e~igd~eia~~A~l~nRYTd~sL~GvIlD  458 (580)
T KOG3705|consen  381 FHALEEYMEWVEIWFKVLEKRGKPLERRIFLASDDPTVVPEAKNKYPNY--EVIGDTEIAKTAQLNNRYTDASLMGVILD  458 (580)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCCchhheEEEecCCchhchHhhccCCCc--EEeccHHHHHHhhccccchhhhhhheeee
Confidence            344555555555444433     36799999999999999988877653  3331         2    22    67899


Q ss_pred             HHHHhhcCeeeecceeecchhh----hhhhhcCC
Q psy9357          82 LAILSQANHFIGNCISSFTAFV----KRHRDVKG  111 (132)
Q Consensus        82 l~Il~~A~~FIGNcvSSFTa~V----~reR~~~G  111 (132)
                      ..||+++||.+.    |||+.|    ++.+.-.|
T Consensus       459 Ih~LS~~d~LVC----TFSSQVCRvaYEimQt~~  488 (580)
T KOG3705|consen  459 IHILSKVDYLVC----TFSSQVCRVAYEIMQTSG  488 (580)
T ss_pred             eeeecccceEEE----echHHHHHHHHHHHhccC
Confidence            999999999975    577766    44555555

>PRK08780 DNA topoisomerase I; Provisional

Probab=87.69  E-value=1.6  Score=41.24  Aligned_cols=94  Identities=18%  Similarity=0.332  Sum_probs=56.5

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhcc------CCcEEEe------------C--C---C
Q psy9357          24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKR------TEIRIVP------------S--D---Q   76 (132)
Q Consensus        24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~------~~~~vv~------------l--~---~   76 (132)
                      .|+...+++.|+..++   ++..||+|||++.+    --+|-+.|..      ..++.+.            +  +   +
T Consensus        57 ~~~k~~~~~~lk~~~k---~ad~vilAtD~DREGE~Ia~~i~~~l~~~~~~~~~~v~Ri~f~eiT~~aI~~A~~n~r~~d  133 (780)
T PRK08780         57 IDKNEKHVEAIAKAAK---SADDLYLATDPDREGEAISWHLAEILKERGLLKDKPMQRVVFTEITPRAIKEAMAKPRDIA  133 (780)
T ss_pred             cCchHHHHHHHHHHHH---hCCEEEECCCCCcccHHHHHHHHHHhcccccCCCCceEEEEEccCCHHHHHHHHhCCCcCc
Confidence            4666778888888886   56899999999873    2235555631      1232222            1  1   1


Q ss_pred             chHHHHHHHhh-cCeeeeccee---------ec----------chhhhhhhhcCCC-CCCcccCC
Q psy9357          77 SPHVDLAILSQ-ANHFIGNCIS---------SF----------TAFVKRHRDVKGL-PSSFWAFP  120 (132)
Q Consensus        77 ~~~vDl~Il~~-A~~FIGNcvS---------SF----------Ta~V~reR~~~G~-ps~F~g~~  120 (132)
                      ..-+|-..++| +|..||=-+|         .+          .--|.|||++..| |..||.+.
T Consensus       134 ~~l~~A~~aRr~lD~lvG~~lSr~l~~~~~~~lSaGRVQspaL~lIveRE~eI~~F~p~~yw~i~  198 (780)
T PRK08780        134 SDLVDAQQARRALDYLVGFNLSPLLWRKIQRGLSAGRVQSPALRMIVEREEEIEAFIAREYWSIE  198 (780)
T ss_pred             HhHHHHHHHHHHHHHhcCeeecHHHHHhhCCCCcccccHHHHHHHHHHHHHHHHhCCCcceEEEE
Confidence            22233333332 3566776655         12          2245899999997 78999763

>PRK07283 hypothetical protein; Provisional

Probab=85.90  E-value=3.1  Score=29.34  Aligned_cols=67  Identities=12%  Similarity=0.224  Sum_probs=45.5

Q ss_pred             HHHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeCCCchHHHHHHHhhcCeeeecceeecc
Q psy9357          32 RQLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIGNCISSFT  100 (132)
Q Consensus        32 ~~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l~~~~~vDl~Il~~A~~FIGNcvSSFT  100 (132)
                      +++.+.+++- +++-||+|+|+++ ..+.+...-...++.++...+...+.+++.. ....||=.-.-|+
T Consensus        24 ~~v~~aik~g-k~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~eLG~a~Gk-~~~vvai~d~g~a   91 (98)
T PRK07283         24 ELVVKAIQSG-QAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTLELSAAVGK-PRKVLAVTDAGFS   91 (98)
T ss_pred             HHHHHHHHcC-CccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCC-CceEEEEeChhHH
Confidence            4566666665 8999999999886 4666767655567888776666777777775 3555554433343

>PRK06599 DNA topoisomerase I; Validated

Probab=85.53  E-value=1.7  Score=40.14  Aligned_cols=39  Identities=23%  Similarity=0.349  Sum_probs=29.4

Q ss_pred             cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhh
Q psy9357          23 CFPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAF   64 (132)
Q Consensus        23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l   64 (132)
                      ..|+.+.+++.|+.+++   ++..|+||||++.+    ..++-+++
T Consensus        56 ~~~~~~~~~~~ik~l~~---~~d~iiiAtD~DrEGE~I~~~i~~~~   98 (675)
T PRK06599         56 IIEGKEKVVDALKKAAK---KADAVYLATDPDREGEAIAWHIAEVL   98 (675)
T ss_pred             ECCcHHHHHHHHHHHHh---hCCEEEECCCCCcchHHHHHHHHHHH
Confidence            45777888888888886   56899999999873    33466666

>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=85.18  E-value=8.7  Score=31.76  Aligned_cols=97  Identities=15%  Similarity=0.091  Sum_probs=66.8

Q ss_pred             ccCCCHHHHHHHHHHHHHHhC----CCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC-------CC-chHHHHHHH
Q psy9357          22 LCFPSVETVVRQLKRVVREHG----QIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS-------DQ-SPHVDLAIL   85 (132)
Q Consensus        22 ~C~Ps~~~I~~~ik~~~~~~~----~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l-------~~-~~~vDl~Il   85 (132)
                      +..|+.......+-+++.+..    +.++|+|..+++.    ..+.++++|++.|++++..       .| .++|..+-.
T Consensus       114 r~~~~~~~~~~~l~~~~~~~~~~~~~~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~  193 (351)
T cd06334         114 PVGPTYSDQARALVQYIAEQEGGKLKGKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRR  193 (351)
T ss_pred             eCCCCHHHHHHHHHHHHHHhcccCCCCCeEEEEeCCCccchhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHH
Confidence            445777777777777776652    3899999985554    4677888888889988753       23 788999999


Q ss_pred             hhcCeeeecceeecchhhhhhhhcCCCCCCccc
Q psy9357          86 SQANHFIGNCISSFTAFVKRHRDVKGLPSSFWA  118 (132)
Q Consensus        86 ~~A~~FIGNcvSSFTa~V~reR~~~G~ps~F~g  118 (132)
                      +.+|..+-......+..+.++=...|++..|.+
T Consensus       194 ~~pd~V~~~~~~~~~~~~~~~~~~~G~~~~~~~  226 (351)
T cd06334         194 SGPDYVILWGWGVMNPVAIKEAKRVGLDDKFIG  226 (351)
T ss_pred             cCCCEEEEecccchHHHHHHHHHHcCCCceEEE
Confidence            999998766666555544443333466544443

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region

Probab=84.86  E-value=2.4  Score=30.74  Aligned_cols=45  Identities=18%  Similarity=0.340  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHhCCCcEEEEec---CCc-----ccHHHHHHhhccC-CcEEEe
Q psy9357          27 VETVVRQLKRVVREHGQIKYIFVAT---DNN-----NLNEPLKEAFKRT-EIRIVP   73 (132)
Q Consensus        27 ~~~I~~~ik~~~~~~~~lk~VfIaT---D~~-----~~~~eLk~~l~~~-~~~vv~   73 (132)
                      -+.++.+++.+. +. ++..|+++|   +.+     +++++|++.+++. |++||.
T Consensus        51 g~~~~~~~~~l~-~~-~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV~  104 (107)
T PF08821_consen   51 GRKLVRRIKKLK-KN-GADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVVE  104 (107)
T ss_pred             hhHHHHHHHHHH-HC-CCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEee
Confidence            678888888887 44 899999999   433     5899999999876 888873

The region has many conserved cysteines and histidines suggestive of a zinc binding function.

>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway

Probab=84.52  E-value=4.1  Score=34.38  Aligned_cols=70  Identities=13%  Similarity=0.050  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhccCCcEEEeC------CCc----hHHHHHHHhhcCeeeec
Q psy9357          29 TVVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKRTEIRIVPS------DQS----PHVDLAILSQANHFIGN   94 (132)
Q Consensus        29 ~I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l------~~~----~~vDl~Il~~A~~FIGN   94 (132)
                      ..++++.+.++++ +.++++|-||..    .+.+++++.|+..++++..+      |..    ..++++=-.++|..||=
T Consensus        10 g~~~~l~~~l~~~-g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIai   88 (370)
T cd08192          10 GAIKELPAECAEL-GIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAF   88 (370)
T ss_pred             CHHHHHHHHHHHc-CCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence            3567787888887 889999999854    26899999998767655432      333    34444446778999877


Q ss_pred             ceeec
Q psy9357          95 CISSF   99 (132)
Q Consensus        95 cvSSF   99 (132)
                      |--|-
T Consensus        89 GGGSv   93 (370)
T cd08192          89 GGGSA   93 (370)
T ss_pred             CCchH
Confidence            65443

NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm

>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor

Probab=84.00  E-value=4.5  Score=34.27  Aligned_cols=71  Identities=21%  Similarity=0.219  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeeec
Q psy9357          29 TVVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIGN   94 (132)
Q Consensus        29 ~I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIGN   94 (132)
                      ..++++...++++ +.++++|-||..    .++++++..|++.++++..+      |.    ...++++--.++|..||=
T Consensus        12 g~l~~l~~~l~~~-~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIai   90 (376)
T cd08193          12 GSLARLGELLAAL-GAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGF   90 (376)
T ss_pred             CHHHHHHHHHHHc-CCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence            4567777888887 889999999864    26899999998777655432      33    345555556788999887


Q ss_pred             ceeecc
Q psy9357          95 CISSFT  100 (132)
Q Consensus        95 cvSSFT  100 (132)
                      |-=|--
T Consensus        91 GGGs~i   96 (376)
T cd08193          91 GGGSSM   96 (376)
T ss_pred             CCchHH
Confidence            655543

5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.

>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like

Probab=83.75  E-value=4.1  Score=34.55  Aligned_cols=70  Identities=16%  Similarity=0.115  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEecCCcc-----cHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeee
Q psy9357          29 TVVRQLKRVVREHGQIKYIFVATDNNN-----LNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIG   93 (132)
Q Consensus        29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~-----~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIG   93 (132)
                      ..++++.+.+++. + ++++|-||...     .++++++.|++.++++..+      |.    ...++++--.++|..||
T Consensus        12 g~l~~l~~~~~~~-g-~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~Iia   89 (380)
T cd08185          12 GKLNELGEEALKP-G-KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVG   89 (380)
T ss_pred             CHHHHHHHHHHhc-C-CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            4566777777776 6 89999998643     6789999998877665543      23    34445555668999997


Q ss_pred             cceeecc
Q psy9357          94 NCISSFT  100 (132)
Q Consensus        94 NcvSSFT  100 (132)
                      =|--|--
T Consensus        90 vGGGS~i   96 (380)
T cd08185          90 LGGGSSM   96 (380)
T ss_pred             eCCccHH
Confidence            7664443

Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.

>PRK06683 hypothetical protein; Provisional

Probab=83.72  E-value=3.3  Score=28.55  Aligned_cols=43  Identities=12%  Similarity=0.202  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhCCCcEEEEecCCccc-HHHHHHhhccCCcEEEeCC
Q psy9357          32 RQLKRVVREHGQIKYIFVATDNNNL-NEPLKEAFKRTEIRIVPSD   75 (132)
Q Consensus        32 ~~ik~~~~~~~~lk~VfIaTD~~~~-~~eLk~~l~~~~~~vv~l~   75 (132)
                      +++.+.+++. +++-||||.|.++. .+.+..+=+..++.++..+
T Consensus        17 ~~v~kaik~g-kaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~   60 (82)
T PRK06683         17 KRTLEAIKNG-IVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE   60 (82)
T ss_pred             HHHHHHHHcC-CeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence            3444555554 89999999998875 5555555556678777654

>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors

Probab=82.72  E-value=8.3  Score=30.84  Aligned_cols=94  Identities=18%  Similarity=0.194  Sum_probs=66.5

Q ss_pred             cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCc---EEE--eC-C--C-chHHHHHHHhhcCee
Q psy9357          21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEI---RIV--PS-D--Q-SPHVDLAILSQANHF   91 (132)
Q Consensus        21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~---~vv--~l-~--~-~~~vDl~Il~~A~~F   91 (132)
                      -.+.|+.....+.+-++++.. +.++|+|..|.+.+...|+++|++.+.   .|+  .. +  | .+++..+-...+|.+
T Consensus       107 fr~~p~~~~~~~a~~~~~~~~-~w~~vavl~~~~~~~~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i~~~~~d~v  185 (327)
T cd06382         107 INLYPSNADLSRAYADIVKSF-NWKSFTIIYESAEGLLRLQELLQAFGISGITITVRQLDDDLDYRPLLKEIKNSGDNRI  185 (327)
T ss_pred             EEeCCCHHHHHHHHHHHHHhc-CCcEEEEEecChHHHHHHHHHHHhhccCCCeEEEEEccCCccHHHHHHHHHhcCceEE
Confidence            456788888888888888887 899999999888898999999986553   232  23 2  2 667777777788888


Q ss_pred             eecceeecchhhhhhhhcCCCCCC
Q psy9357          92 IGNCISSFTAFVKRHRDVKGLPSS  115 (132)
Q Consensus        92 IGNcvSSFTa~V~reR~~~G~ps~  115 (132)
                      |-.|...=...+-++=...|+...
T Consensus       186 v~~~~~~~~~~~~~qa~~~g~~~~  209 (327)
T cd06382         186 IIDCSADILIELLKQAQQVGMMSE  209 (327)
T ss_pred             EEECCHHHHHHHHHHHHHhCcccc
Confidence            877765555555444344565443

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri

>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD)

Probab=82.67  E-value=6.4  Score=33.21  Aligned_cols=73  Identities=15%  Similarity=0.064  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEecCCcc-----cHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeee
Q psy9357          29 TVVRQLKRVVREHGQIKYIFVATDNNN-----LNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIG   93 (132)
Q Consensus        29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~-----~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIG   93 (132)
                      ..++++.+.+++. + ++++|-||...     +++++++.|+..++++..+      |.    ...+|++--..+|..||
T Consensus        12 g~l~~l~~~~~~~-g-~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa   89 (357)
T cd08181          12 NCVEKHGEELAAL-G-KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIG   89 (357)
T ss_pred             CHHHHHHHHHHHc-C-CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence            3566777777777 6 89999998653     5689999998777655432      32    35566666778899998


Q ss_pred             cceeecchhh
Q psy9357          94 NCISSFTAFV  103 (132)
Q Consensus        94 NcvSSFTa~V  103 (132)
                      =|-=|--.-.
T Consensus        90 vGGGSviD~a   99 (357)
T cd08181          90 IGGGSPLDAA   99 (357)
T ss_pred             eCCchHHHHH
Confidence            7655544333

1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.

>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=82.34  E-value=7.4  Score=31.91  Aligned_cols=88  Identities=17%  Similarity=0.144  Sum_probs=59.3

Q ss_pred             CCCHHHHHHHHHHHHHHhCC-CcEEEEecCCcccHH-------HHHHhhccCCcEEEe---C----CC-chHHHHHHHhh
Q psy9357          24 FPSVETVVRQLKRVVREHGQ-IKYIFVATDNNNLNE-------PLKEAFKRTEIRIVP---S----DQ-SPHVDLAILSQ   87 (132)
Q Consensus        24 ~Ps~~~I~~~ik~~~~~~~~-lk~VfIaTD~~~~~~-------eLk~~l~~~~~~vv~---l----~~-~~~vDl~Il~~   87 (132)
                      .++..++.+.+-..++.. + .++|++..+++.|=.       ++.++|++.|++++.   +    .| .++|..+.-+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~-~~~k~v~ii~~~~~~g~~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~ik~a~  203 (357)
T cd06337         125 FWGAEDVVATYVGMWKQL-ETNKKVGILYPNDPDGNAFADPVIGLPAALADAGYKLVDPGRFEPGTDDFSSQINAFKREG  203 (357)
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCceEEEEeecCchhHHHHHhhhcccHHHHhCCcEEecccccCCCCCcHHHHHHHHHhcC
Confidence            345556666766666665 6 899999986665432       233556667888874   2    23 78999999999


Q ss_pred             cCeeeecceeecchh-hhhhhhcCCCC
Q psy9357          88 ANHFIGNCISSFTAF-VKRHRDVKGLP  113 (132)
Q Consensus        88 A~~FIGNcvSSFTa~-V~reR~~~G~p  113 (132)
                      +|..++.+.....+. ++..|+ .|+.
T Consensus       204 pD~v~~~~~~~~~~~~~~~~~~-~G~~  229 (357)
T cd06337         204 VDIVTGFAIPPDFATFWRQAAQ-AGFK  229 (357)
T ss_pred             CCEEEeCCCccHHHHHHHHHHH-CCCC
Confidence            999998877765554 444455 3543

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>PRK10624 L-1,2-propanediol oxidoreductase; Provisional

Probab=82.30  E-value=5.3  Score=34.03  Aligned_cols=67  Identities=13%  Similarity=0.128  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeeec
Q psy9357          29 TVVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIGN   94 (132)
Q Consensus        29 ~I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIGN   94 (132)
                      ..+++|...++++ +.++++|-||..    .+.+++++.|++.++++..+      |.    ...++++--.++|..||=
T Consensus        16 g~l~~l~~~~~~~-g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIai   94 (382)
T PRK10624         16 GAIGALTDEVKRR-GFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAI   94 (382)
T ss_pred             CHHHHHHHHHHhc-CCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence            4677888888888 889999999864    27889999998777655433      32    234455556689999876


Q ss_pred             ce
Q psy9357          95 CI   96 (132)
Q Consensus        95 cv   96 (132)
                      |-
T Consensus        95 GG   96 (382)
T PRK10624         95 GG   96 (382)
T ss_pred             CC
Confidence            55

>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2

Probab=81.95  E-value=9.7  Score=28.80  Aligned_cols=41  Identities=17%  Similarity=0.268  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEe
Q psy9357          28 ETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVP   73 (132)
Q Consensus        28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~   73 (132)
                      .-|...|+++.+.- .+..|+||||..+..+.    +++.|+.|+.
T Consensus        25 pLi~~~i~~a~~s~-~~d~IvVaTd~~~i~~~----~~~~g~~v~~   65 (217)
T PF02348_consen   25 PLIEYVIERAKQSK-LIDEIVVATDDEEIDDI----AEEYGAKVIF   65 (217)
T ss_dssp             EHHHHHHHHHHHTT-TTSEEEEEESSHHHHHH----HHHTTSEEEE
T ss_pred             cHHHHHHHHHHhCC-CCCeEEEeCCCHHHHHH----HHHcCCeeEE
Confidence            34555566655554 78999999999654443    3334444444

7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....

>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]

Probab=81.78  E-value=5.6  Score=34.80  Aligned_cols=70  Identities=14%  Similarity=0.130  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhccCCcEEEeC----CC------chHHHHHHHhhcCeeeec
Q psy9357          29 TVVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKRTEIRIVPS----DQ------SPHVDLAILSQANHFIGN   94 (132)
Q Consensus        29 ~I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l----~~------~~~vDl~Il~~A~~FIGN   94 (132)
                      ..++.+.+.++.+ +.++++|-||..    .+++++.+.|+..++++...    |+      ...+..+--.+.|..||=
T Consensus        15 g~l~~l~~~~~~~-g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIal   93 (377)
T COG1454          15 GSLKELGEEVKRL-GAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIAL   93 (377)
T ss_pred             ChHHHHHHHHHhc-CCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence            3567788888888 999999999975    48999999999888654443    32      455566667788999886


Q ss_pred             ceeec
Q psy9357          95 CISSF   99 (132)
Q Consensus        95 cvSSF   99 (132)
                      |-=|-
T Consensus        94 GGGS~   98 (377)
T COG1454          94 GGGSV   98 (377)
T ss_pred             CCccH
Confidence            65443

>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor

Probab=81.09  E-value=9.2  Score=31.53  Aligned_cols=92  Identities=8%  Similarity=0.111  Sum_probs=64.7

Q ss_pred             ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCc----EEEe---C-CC----chHHHHHHH
Q psy9357          22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEI----RIVP---S-DQ----SPHVDLAIL   85 (132)
Q Consensus        22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~----~vv~---l-~~----~~~vDl~Il   85 (132)
                      +..|+.....+.+-+.++.+ +.++|.|..+.+.    ..+.+++++++.|+    +++.   + +.    .+.+..+--
T Consensus       133 R~~psd~~~~~a~~~~l~~~-~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~d~~~~l~~ik~  211 (377)
T cd06379         133 RTVPPYSHQADVWLEMLRSF-KWNKVILLVSDDHEGRAAQKRFETLLEEREIEFKIKVEKVVEFEPGEKNVTSLLQEAKE  211 (377)
T ss_pred             EecCCHHHHHHHHHHHHHHc-CCeEEEEEEEcCcchhHHHHHHHHHHHhcCCccceeeeEEEecCCchhhHHHHHHHHhh
Confidence            45577777777777788888 9999999997666    57888899988887    7664   3 22    455555556


Q ss_pred             hhcCeeeecceeecchhhhhhhhcCCCCC
Q psy9357          86 SQANHFIGNCISSFTAFVKRHRDVKGLPS  114 (132)
Q Consensus        86 ~~A~~FIGNcvSSFTa~V~reR~~~G~ps  114 (132)
                      ..+|++|.-|-..=...+-++=..+|+.+
T Consensus       212 ~~~~vIvl~~~~~~~~~l~~qa~~~g~~~  240 (377)
T cd06379         212 LTSRVILLSASEDDAAVIYRNAGMLNMTG  240 (377)
T ss_pred             cCCeEEEEEcCHHHHHHHHHHHHHcCCCC
Confidence            78999998776665555544434445543

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore

>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=81.03  E-value=12  Score=30.50  Aligned_cols=94  Identities=15%  Similarity=0.154  Sum_probs=60.9

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC-------CC-chHHHHHHHhhcCee
Q psy9357          24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS-------DQ-SPHVDLAILSQANHF   91 (132)
Q Consensus        24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l-------~~-~~~vDl~Il~~A~~F   91 (132)
                      -|+-....+.+-.++++. +.++|+|..+...    ..+.++++|++.|++++..       .| .+++..+.-+.+|..
T Consensus       119 ~~~~~~~~~~~~~~~~~~-~~~~v~il~~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i~~~~~d~v  197 (347)
T cd06336         119 PPIYNVYGVPFLAYAKKP-GGKKVALLGPNDAYGQPWVAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAEKPDVI  197 (347)
T ss_pred             cCCchhHHHHHHHHHhhc-CCceEEEEccCCchhHHHHHHHHHHHHHcCCEEeeecccCCCCcchHHHHHHHHhcCCCEE
Confidence            355555555566666655 7899999884444    4666778888888888742       23 788888888889988


Q ss_pred             eecceee--cchhhhhhhhcCCCCCCcccC
Q psy9357          92 IGNCISS--FTAFVKRHRDVKGLPSSFWAF  119 (132)
Q Consensus        92 IGNcvSS--FTa~V~reR~~~G~ps~F~g~  119 (132)
                      +-.+...  ...+++..|. .|+...++++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~  226 (347)
T cd06336         198 FLGGPSPAPAALVIKQARE-LGFKGGFLSC  226 (347)
T ss_pred             EEcCCCchHHHHHHHHHHH-cCCCccEEec
Confidence            7655544  4455555554 4654444443

This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate

Probab=80.84  E-value=6.4  Score=33.58  Aligned_cols=67  Identities=18%  Similarity=0.148  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhccCCcEEEeC----CC------chHHHHHHHhhcCeeeecc
Q psy9357          30 VVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKRTEIRIVPS----DQ------SPHVDLAILSQANHFIGNC   95 (132)
Q Consensus        30 I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l----~~------~~~vDl~Il~~A~~FIGNc   95 (132)
                      .++++...++.+ + ++++|-||..    .+++++.+.|++.++++..+    ++      ...++++.-.++|..||=|
T Consensus        10 ~l~~l~~~~~~~-g-~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiG   87 (386)
T cd08191          10 QRRQLPRLAARL-G-SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLG   87 (386)
T ss_pred             HHHHHHHHHHHc-C-CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeC
Confidence            457777788887 7 8999999864    47889999998777665543    11      3445666667889998766


Q ss_pred             eee
Q psy9357          96 ISS   98 (132)
Q Consensus        96 vSS   98 (132)
                      -=|
T Consensus        88 GGS   90 (386)
T cd08191          88 GGS   90 (386)
T ss_pred             Cch
Confidence            544

6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.

>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems

Probab=80.82  E-value=24  Score=28.33  Aligned_cols=88  Identities=10%  Similarity=0.033  Sum_probs=58.9

Q ss_pred             ccccCCCHHHHHHHHHHHH-HHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC-------CC-chHHHHHHHh
Q psy9357          20 EELCFPSVETVVRQLKRVV-REHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS-------DQ-SPHVDLAILS   86 (132)
Q Consensus        20 ~~~C~Ps~~~I~~~ik~~~-~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l-------~~-~~~vDl~Il~   86 (132)
                      .-.+-|+...-...+-+++ +.. +.++|+|..+...    ..+.++++|++.|++++..       .| .+++..+...
T Consensus       111 ~f~~~~~~~~~~~~~~~~~~~~~-~~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~  189 (340)
T cd06349         111 IFRNSTSQAIEAPLLADYAVKDL-GFKKVAILSVNTDWGRTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDA  189 (340)
T ss_pred             EEEccCCcHHHHHHHHHHHHHHc-CCcEEEEEecCChHhHHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhc
Confidence            3445666666666666664 555 7899999884444    4667778887778888741       22 6888888888


Q ss_pred             hcCeeeecceee-cchhhhhhhh
Q psy9357          87 QANHFIGNCISS-FTAFVKRHRD  108 (132)
Q Consensus        87 ~A~~FIGNcvSS-FTa~V~reR~  108 (132)
                      .+|++|..+... ...+++..++
T Consensus       190 ~~d~v~~~~~~~~~~~~~~~~~~  212 (340)
T cd06349         190 NPDAIILISYYNDGAPIARQARA  212 (340)
T ss_pred             CCCEEEEccccchHHHHHHHHHH
Confidence            899887666543 4445555554

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>PRK15454 ethanol dehydrogenase EutG; Provisional

Probab=80.57  E-value=7.1  Score=33.66  Aligned_cols=76  Identities=17%  Similarity=0.114  Sum_probs=53.4

Q ss_pred             ccCCC----HHHHHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhccCCcEEEeC------CCchHHHHH----
Q psy9357          22 LCFPS----VETVVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKRTEIRIVPS------DQSPHVDLA----   83 (132)
Q Consensus        22 ~C~Ps----~~~I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l------~~~~~vDl~----   83 (132)
                      .+.|+    =...++++-..++++ +.+.++|-||..    .+++++.+.|++.+++++.+      |....|+-.    
T Consensus        24 f~~P~~i~fG~g~~~~l~~~~~~~-g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~  102 (395)
T PRK15454         24 FSVPPVTLCGPGAVSSCGQQAQTR-GLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQL  102 (395)
T ss_pred             eecCCeEEECcCHHHHHHHHHHhc-CCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHH
Confidence            45565    246778888888888 899999999853    46899999999878765543      223334443    


Q ss_pred             HHhhcCeeeecceee
Q psy9357          84 ILSQANHFIGNCISS   98 (132)
Q Consensus        84 Il~~A~~FIGNcvSS   98 (132)
                      =-.++|..||=|--|
T Consensus       103 r~~~~D~IiavGGGS  117 (395)
T PRK15454        103 RESGCDGVIAFGGGS  117 (395)
T ss_pred             HhcCcCEEEEeCChH
Confidence            357889998866544

>PRK13600 putative ribosomal protein L7Ae-like; Provisional

Probab=80.43  E-value=3.9  Score=28.67  Aligned_cols=42  Identities=10%  Similarity=0.190  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhCCCcEEEEecCCccc-HHHHHHhhccCCcEEEeC
Q psy9357          32 RQLKRVVREHGQIKYIFVATDNNNL-NEPLKEAFKRTEIRIVPS   74 (132)
Q Consensus        32 ~~ik~~~~~~~~lk~VfIaTD~~~~-~~eLk~~l~~~~~~vv~l   74 (132)
                      +|..+.+++. .++-||||-|.+++ +..|..+-++.++.++..
T Consensus        19 kqt~Kai~kg-~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V   61 (84)
T PRK13600         19 KETLKALKKD-QVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFF   61 (84)
T ss_pred             HHHHHHHhcC-CceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            3444555554 89999999998874 666666666667777765

>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like

Probab=80.42  E-value=7  Score=33.20  Aligned_cols=68  Identities=12%  Similarity=0.130  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC------CCch----HHHHHHHhhcCeeeec
Q psy9357          29 TVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS------DQSP----HVDLAILSQANHFIGN   94 (132)
Q Consensus        29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l------~~~~----~vDl~Il~~A~~FIGN   94 (132)
                      ..++++...++++ +.++++|-||..-    +.+++++.|+..++.+..+      |...    .++++--.++|..||=
T Consensus        14 g~l~~l~~~l~~~-g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIai   92 (377)
T cd08188          14 GALKLAGRYARRL-GAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAV   92 (377)
T ss_pred             CHHHHHHHHHHHc-CCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence            4567788888888 8899999998542    6889999998766655432      3333    3444446688999876


Q ss_pred             cee
Q psy9357          95 CIS   97 (132)
Q Consensus        95 cvS   97 (132)
                      |-=
T Consensus        93 GGG   95 (377)
T cd08188          93 GGG   95 (377)
T ss_pred             CCc
Confidence            543

Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.

>TIGR02638 lactal_redase lactaldehyde reductase

Probab=80.39  E-value=6.8  Score=33.30  Aligned_cols=69  Identities=16%  Similarity=0.118  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC------CCc----hHHHHHHHhhcCeeeec
Q psy9357          29 TVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS------DQS----PHVDLAILSQANHFIGN   94 (132)
Q Consensus        29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l------~~~----~~vDl~Il~~A~~FIGN   94 (132)
                      ..++++.+.++++ +.++++|-||..-    +.+++++.|++.+++++.+      |..    ..++++--.++|..||=
T Consensus        15 g~l~~l~~~l~~~-g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~Iiai   93 (379)
T TIGR02638        15 GAIEDIVDEVKRR-GFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAI   93 (379)
T ss_pred             CHHHHHHHHHHhc-CCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence            5677788888888 8899999998642    6789999998777665543      222    34444555678999876


Q ss_pred             ceee
Q psy9357          95 CISS   98 (132)
Q Consensus        95 cvSS   98 (132)
                      |-=|
T Consensus        94 GGGS   97 (379)
T TIGR02638        94 GGGS   97 (379)
T ss_pred             CChH
Confidence            6533

This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.

>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like

Probab=80.21  E-value=7.3  Score=33.01  Aligned_cols=69  Identities=16%  Similarity=0.155  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeeec
Q psy9357          29 TVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIGN   94 (132)
Q Consensus        29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIGN   94 (132)
                      ..+++|.+.++++ +.++++|-||..-    .++++++.|+..++.+..+      |.    ...++++--.++|..||=
T Consensus        12 g~l~~l~~~l~~~-g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIai   90 (374)
T cd08189          12 GSLAQLPAAISQL-GVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAV   90 (374)
T ss_pred             CHHHHHHHHHHhc-CCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence            4567788888888 8899999998642    5789999998777655443      32    344555556789999876


Q ss_pred             ceee
Q psy9357          95 CISS   98 (132)
Q Consensus        95 cvSS   98 (132)
                      |--|
T Consensus        91 GGGS   94 (374)
T cd08189          91 GGGS   94 (374)
T ss_pred             CCcc
Confidence            5533

Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.

>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=80.20  E-value=15  Score=29.28  Aligned_cols=94  Identities=17%  Similarity=0.182  Sum_probs=63.6

Q ss_pred             ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC---C----C-chHHHHHHHhhcC
Q psy9357          22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS---D----Q-SPHVDLAILSQAN   89 (132)
Q Consensus        22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l---~----~-~~~vDl~Il~~A~   89 (132)
                      +..|+.....+.+-+++.+. +.++|.|.++.+.    ..+.+++++++.|++|+..   +    | .++|..+.-+.+|
T Consensus       116 r~~~~~~~~~~~l~~~~~~~-~~~~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd  194 (312)
T cd06346         116 RTAPSDALQGQALAQLAAER-GYKSVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPD  194 (312)
T ss_pred             EecCCcHHHHHHHHHHHHHc-CCCeEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCC
Confidence            34566666677777777776 7899999885554    3667788888889988752   1    2 6788888888899


Q ss_pred             eeeecceee-cchhhhhhhhcCCCCCCcc
Q psy9357          90 HFIGNCISS-FTAFVKRHRDVKGLPSSFW  117 (132)
Q Consensus        90 ~FIGNcvSS-FTa~V~reR~~~G~ps~F~  117 (132)
                      ..|..+... ...+++..|+ .|++..+.
T Consensus       195 ~v~~~~~~~~~~~~~~~~~~-~G~~~~~~  222 (312)
T cd06346         195 ALVVIGYPETGSGILRSAYE-QGLFDKFL  222 (312)
T ss_pred             EEEEecccchHHHHHHHHHH-cCCCCceE
Confidence            777665544 4445555554 46543343

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
3zy2_A	362	Crystal Structure Of Pofut1 In Complex With Gdp (Hi		4e-15
4ap5_A	408	Crystal Structure Of Human Pofut2 Length = 408		6e-04
4ap6_A	422	Crystal Structure Of Human Pofut2 E54a Mutant In Co		7e-04

>pdb|3ZY2|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp (High Resolution Dataset) Length = 362

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Query: 7   QCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKR 66
           QCLG  +  G  T+E+C PS + ++ Q+   V   G  K +FVA+D +++ + + EA K 
Sbjct: 244 QCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGA-KSVFVASDKDHMIDEINEALKP 302
Query: 67  TEI---RIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGL---PSSFWA 118
            EI   R  P D   +  LAI+ +A+ F+GNC+S+F+  VKR RD  G    PS+F+ 
Sbjct: 303 YEIEAHRQEPDDM--YTSLAIMGRADLFVGNCVSTFSHIVKRERDHAGQSPRPSAFFG 358

>pdb|4AP5|A Chain A, Crystal Structure Of Human Pofut2 Length = 408

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 25  PSVETVVRQLKRVVREHGQIKYIFVATDN-----NNLNEPLKEAFK----RTEIRIVPSD 75
           PS+E  VR+++ +++ H ++  +FVATD        L + L E  +      E+ +    
Sbjct: 286 PSLEGAVRKIRSLMKTH-RLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDG 344
Query: 76  QSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGL 112
               +D  I + A  FIG  +S+F+  +   R++ GL
Sbjct: 345 GVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGL 381

>pdb|4AP6|A Chain A, Crystal Structure Of Human Pofut2 E54a Mutant In Complex With Gdp- Fucose Length = 422

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 25  PSVETVVRQLKRVVREHGQIKYIFVATDN-----NNLNEPLKEAFK----RTEIRIVPSD 75
           PS+E  VR+++ +++ H ++  +FVATD        L + L E  +      E+ +    
Sbjct: 300 PSLEGAVRKIRSLMKTH-RLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDG 358
Query: 76  QSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGL 112
               +D  I + A  FIG  +S+F+  +   R++ GL
Sbjct: 359 GVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGL 395

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
3zy2_A	362	Putative GDP-fucose protein O-fucosyltransferase;	1e-40
4ap5_A	408	GDP-fucose protein O-fucosyltransferase 2; GT-B, G	2e-27

>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* Length = 362

 Score =  137 bits (346), Expect = 1e-40
 Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 5/120 (4%)

Query: 5   APQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAF 64
           + QCLG  +  G  T+E+C PS + ++ Q+   V   G  K +FVA+D +++ + + EA 
Sbjct: 242 SEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIG-AKSVFVASDKDHMIDEINEAL 300

Query: 65  KRTEIRIV-PSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGL---PSSFWAFP 120
           K  EI          +  LAI+ +A+ F+GNC+S+F+  VKR RD  G    PS+F+   
Sbjct: 301 KPYEIEAHRQEPDDMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAGQSPRPSAFFGIR 360

>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* Length = 408

 Score =  103 bits (257), Expect = 2e-27
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 12/126 (9%)

Query: 6   PQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLN-EPLKEAF 64
              +  R +  +       PS+E  VR+++ +++ H  +  +FVATD      E LK+  
Sbjct: 267 YLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHR-LDKVFVATDAVRKEYEELKKLL 325

Query: 65  KRT--------EIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSS- 115
                      E+ +        +D  I + A  FIG  +S+F+  +   R++ GL    
Sbjct: 326 PEMVRFEPTWEELELYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKT 385

Query: 116 -FWAFP 120
            +  F 
Sbjct: 386 TYNRFC 391

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
3zy2_A	362	Putative GDP-fucose protein O-fucosyltransferase;	100.0
4ap5_A	408	GDP-fucose protein O-fucosyltransferase 2; GT-B, G	99.95
2hhc_A	330	NODZ, nodulation fucosyltransferase NODZ; glycosyl	98.77
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	97.95
4f11_A	433	Gamma-aminobutyric acid type B receptor subunit 2;	87.79
3h6g_A	395	Glutamate receptor, ionotropic kainate 2; membrane	87.19
3bfj_A	387	1,3-propanediol oxidoreductase; opportunistic path	83.13
3om0_A	393	Glutamate receptor, ionotropic kainate 5; membrane	82.02

>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*

Probab=100.00  E-value=4.8e-50  Score=339.10  Aligned_cols=117  Identities=35%  Similarity=0.612  Sum_probs=114.2

Q ss_pred             ccCCcccccccCCccccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CCchHHH
Q psy9357           3 TNAPQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQSPHVD   81 (132)
Q Consensus         3 ~~spqC~g~~~e~~~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~~~~vD   81 (132)
                      |+||||+||+++++++|++||+||+++|+++|+++++++ ++++||||||+++|++||+++|++++++||++ |++|+||
T Consensus       240 faSPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~-~lksVFIATDa~~~~~ELk~~L~~~~v~vv~~~pe~a~ID  318 (362)
T 3zy2_A          240 FASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSI-GAKSVFVASDKDHMIDEINEALKPYEIEAHRQEPDDMYTS  318 (362)
T ss_dssp             TTTHHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHH-TCSEEEEEESSCCCHHHHHHHHGGGTCCEECCSSCCHHHH
T ss_pred             ccCCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHHhhccCceEEEeCCchhHHH
Confidence            799999999999999999999999999999999999999 99999999999999999999999889999999 8999999


Q ss_pred             HHHHhhcCeeeecceeecchhhhhhhhcCC---CCCCcccCC
Q psy9357          82 LAILSQANHFIGNCISSFTAFVKRHRDVKG---LPSSFWAFP  120 (132)
Q Consensus        82 l~Il~~A~~FIGNcvSSFTa~V~reR~~~G---~ps~F~g~~  120 (132)
                      |+||+|||||||||+||||+||+|||+++|   +||+||||+
T Consensus       319 ~~I~~~A~~FIGN~~SSFSa~I~rERdi~G~~~~ps~Ffg~~  360 (362)
T 3zy2_A          319 LAIMGRADLFVGNCVSTFSHIVKRERDHAGQSPRPSAFFGIR  360 (362)
T ss_dssp             HHHHHHSSEEEECTTCHHHHHHHHHHHHSSSSCCCEEETTC-
T ss_pred             HHHHHhCCEeecCccccccHHHHHHHHhcCCCCCCccccCCC
Confidence            999999999999999999999999999999   999999997

>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*

Probab=99.95  E-value=2.9e-29  Score=210.49  Aligned_cols=113  Identities=25%  Similarity=0.356  Sum_probs=99.4

Q ss_pred             cCCcccccccCCccccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeC-C------
Q psy9357           4 NAPQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPS-D------   75 (132)
Q Consensus         4 ~spqC~g~~~e~~~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l-~------   75 (132)
                      .+.+|++.++.....+.++|+||+++|+++|+++++++ +++.||||||+.+ ++++|+++|...    +.+ +      
T Consensus       265 ~~y~~~H~Rr~d~~~~~~~~~ps~~~~~~~i~~~~~~~-~~~~VyiATD~~~~~~~~l~~~~~~~----~~~~~~~~~~~  339 (408)
T 4ap5_A          265 GPYLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTH-RLDKVFVATDAVRKEYEELKKLLPEM----VRFEPTWEELE  339 (408)
T ss_dssp             EEEEEEEECCTTTTTTTCSSSCCHHHHHHHHHHHHHHH-TCSCEEEEECCCHHHHHHHHHHCTTE----ECCCCCHHHHH
T ss_pred             CCccccccccccchhhhhccCCCHHHHHHHHHHHHHhc-CCCEEEEeCCCchhHHHHHHHhCCCc----EEecCcchhhh
Confidence            34578888888888999999999999999999999999 9999999999765 689999999642    221 1      


Q ss_pred             ---C--chHHHHHHHhhcCeeeecceeecchhhhhhhhcCCCC--CCcccCCC
Q psy9357          76 ---Q--SPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLP--SSFWAFPI  121 (132)
Q Consensus        76 ---~--~~~vDl~Il~~A~~FIGNcvSSFTa~V~reR~~~G~p--s~F~g~~~  121 (132)
                         +  .++|||+||+||++|||||+||||++|+|||+++|||  ||||+|..
T Consensus       340 ~~~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~~~t~~~~c~  392 (408)
T 4ap5_A          340 LYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCG  392 (408)
T ss_dssp             HHHHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCGGGTSCBCCC
T ss_pred             ccCcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCCCccccccCC
Confidence               1  5889999999999999999999999999999999999  89999963

>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*

Probab=98.77  E-value=2.2e-09  Score=86.77  Aligned_cols=84  Identities=15%  Similarity=0.239  Sum_probs=62.9

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhC-CCcEEEEecCCcccHHHHHHhhccCC---cEEEe------------C--CCchHHH
Q psy9357          20 EELCFPSVETVVRQLKRVVREHG-QIKYIFVATDNNNLNEPLKEAFKRTE---IRIVP------------S--DQSPHVD   81 (132)
Q Consensus        20 ~~~C~Ps~~~I~~~ik~~~~~~~-~lk~VfIaTD~~~~~~eLk~~l~~~~---~~vv~------------l--~~~~~vD   81 (132)
                      .++|.| ++.+.+.|++...+.+ +.++|||+||...++++|++.+...-   ..++.            .  ...+.+|
T Consensus       192 ~~~~~~-l~~~~~~i~~~~~~~~~~~~~vfvaSDd~~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~D  270 (330)
T 2hhc_A          192 ADSELA-LHQVCMAIRKAKALSYPKPVKVFLCTDSAQVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALID  270 (330)
T ss_dssp             HHHHHH-HHHHHHHHHHHHTSCCSSCEEEEEEESCHHHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHHH
T ss_pred             HHHhHH-HHHHHHHHHHHHhccCcCceEEEEEeCCHHHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHHH
Confidence            345666 8888888888777652 35899999999999999999886410   01100            0  1158899


Q ss_pred             HHHHhhcCeee--ecceeecchhhhh
Q psy9357          82 LAILSQANHFI--GNCISSFTAFVKR  105 (132)
Q Consensus        82 l~Il~~A~~FI--GNcvSSFTa~V~r  105 (132)
                      |++|+++||+|  |+ .||||...+.
T Consensus       271 m~LLS~cd~~I~~~~-~STFs~~aa~  295 (330)
T 2hhc_A          271 MYLLARCATVIRFPP-TSAFTRYARL  295 (330)
T ss_dssp             HHHHTTCSEEEEEST-TCGGGHHHHH
T ss_pred             HHHHHcCCeeEECCC-CCCHHHHHHH
Confidence            99999999999  77 9999999874

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=97.95  E-value=4.4e-05  Score=66.93  Aligned_cols=89  Identities=17%  Similarity=0.230  Sum_probs=70.0

Q ss_pred             cccCCCHHHHHHHHHHHHHHh-----CCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-------------C----Cch
Q psy9357          21 ELCFPSVETVVRQLKRVVREH-----GQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-------------D----QSP   78 (132)
Q Consensus        21 ~~C~Ps~~~I~~~ik~~~~~~-----~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-------------~----~~~   78 (132)
                      ++-+-++++..+.+..++..+     +....||||||.+..++++++.++  +++++.-             .    ..+
T Consensus       311 E~~~~~~~~Y~~~v~~~~~~l~~~~~~~~~~ifLATDDp~v~~e~k~~~p--~~~~~~d~~~~~~a~~~~R~s~~~l~~~  388 (526)
T 2de0_X          311 EAAFHPIEEYMVHVEEHFQLLARRMQVDKKRVYLATDDPSLLKEAKTKYP--NYEFISDNSISWSAGLHNRYTENSLRGV  388 (526)
T ss_dssp             CCCSCSHHHHHHHHHHHHHHHHTTSCCSSCEEEEEESCHHHHHHHHHHCT--TSEEECCCCSSCSSGGGGGTCCTHHHHH
T ss_pred             ccccCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEcCCHHHHHHHHHhCC--CCEEecCcccccccCccccccHHHHHHH
Confidence            455566788888888777633     367999999999999999987665  3444421             1    158


Q ss_pred             HHHHHHHhhcCeeeecceeecchhhhhhhhcCC
Q psy9357          79 HVDLAILSQANHFIGNCISSFTAFVKRHRDVKG  111 (132)
Q Consensus        79 ~vDl~Il~~A~~FIGNcvSSFTa~V~reR~~~G  111 (132)
                      .+||++|+++|+|||+--|+|+..+...|...+
T Consensus       389 l~DL~lLs~cd~~Vgt~sS~~srla~~l~~~~~  421 (526)
T 2de0_X          389 ILDIHFLSQADFLVCTFSSQVCRVAYEIMQTLH  421 (526)
T ss_dssp             HHHHHHHHHSSEEEECTTSHHHHHHHHHHTTSS
T ss_pred             HHHHHHHhcCCeeecCCCCHHHHHHHHHhcCcC
Confidence            999999999999999999999999998887665

>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*

Probab=87.79  E-value=1.5  Score=34.83  Aligned_cols=91  Identities=14%  Similarity=0.116  Sum_probs=64.9

Q ss_pred             ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC----CC-chHHHHHHHhhcCeee
Q psy9357          22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS----DQ-SPHVDLAILSQANHFI   92 (132)
Q Consensus        22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l----~~-~~~vDl~Il~~A~~FI   92 (132)
                      +-.|+.....+.+-++++.. +.++|+|..+.+.    ..+.++++|++.|++|+..    ++ .+++..+--..||++|
T Consensus       133 r~~~~~~~~~~~~~~~~~~~-g~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~d~~~~l~~i~~~~~~vii  211 (433)
T 4f11_A          133 RTVPSDNAVNPAILKLLKHY-QWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKGNDVRIIL  211 (433)
T ss_dssp             ESSCCGGGHHHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHSSSSSCEEEEEEEESSCCHHHHHHHHHTTCCEEE
T ss_pred             EecCchHHHHHHHHHHHHHc-CCcEEEEEEecchhhHHHHHHHHHHHHHcCceEEEEeccCcCHHHHHHHHhhCCCeEEE
Confidence            34577777778888888887 9999999884443    4677888888888887752    34 7888888889999999


Q ss_pred             ecceeecchhhhhhhhcCCCC
Q psy9357          93 GNCISSFTAFVKRHRDVKGLP  113 (132)
Q Consensus        93 GNcvSSFTa~V~reR~~~G~p  113 (132)
                      ..|...-...+-++=...|+.
T Consensus       212 ~~~~~~~~~~~~~~a~~~g~~  232 (433)
T 4f11_A          212 GQFDQNMAAKVFCCAYEENMY  232 (433)
T ss_dssp             EECCHHHHHHHHHHHHHTTCC
T ss_pred             EeCcHHHHHHHHHHHHHcCCC
Confidence            877665544444433334543

>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*

Probab=87.19  E-value=3.1  Score=32.57  Aligned_cols=94  Identities=17%  Similarity=0.198  Sum_probs=65.1

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcEEEe--CC----C-chHHHHHHHhhcC
Q psy9357          20 EELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIRIVP--SD----Q-SPHVDLAILSQAN   89 (132)
Q Consensus        20 ~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~vv~--l~----~-~~~vDl~Il~~A~   89 (132)
                      .-+..|+.....+.+-++++.. +.++|.|..|.+.   .++.+++.+++.|++|+.  ++    + .+++..+--..+|
T Consensus       115 ~~r~~~~~~~~~~~~~~~~~~~-g~~~v~ii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~i~~~~~~  193 (395)
T 3h6g_A          115 YVSLYPDFSSLSRAILDLVQFF-KWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEF  193 (395)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHT-TCSEEEEEESSTHHHHHTHHHHTGGGTSSCEEEEEECCSSGGGGHHHHHHHHHTTCC
T ss_pred             EEEecCCHHHHHHHHHHHHHHC-CCeEEEEEEEChhHHHHHHHHHHhhhcCCceEEEEEeCCCchhHHHHHHHHhhcCCe
Confidence            3455688887788888888888 9999999987553   467788888877877654  32    2 5677777778899


Q ss_pred             eeeecceeecchhhhhhhhcCCCCC
Q psy9357          90 HFIGNCISSFTAFVKRHRDVKGLPS  114 (132)
Q Consensus        90 ~FIGNcvSSFTa~V~reR~~~G~ps  114 (132)
                      ++|--|...-...+-++=...|+..
T Consensus       194 vi~~~~~~~~~~~~~~qa~~~gl~~  218 (395)
T 3h6g_A          194 HVIFDCSHEMAAGILKQALAMGMMT  218 (395)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             EEEEECCHHHHHHHHHHHHHccccC
Confidence            8877666554444444333456543

>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}

Probab=83.13  E-value=2.1  Score=34.92  Aligned_cols=65  Identities=8%  Similarity=-0.001  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHhCCCcEEEEecCCc---c---cHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeee
Q psy9357          30 VVRQLKRVVREHGQIKYIFVATDNN---N---LNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIG   93 (132)
Q Consensus        30 I~~~ik~~~~~~~~lk~VfIaTD~~---~---~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIG   93 (132)
                      .++++.+.++++ +.++++|-||..   .   +.+++.+.|+..+++++.+      |.    ...++++.-.++|..||
T Consensus        20 ~~~~l~~~l~~~-g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIa   98 (387)
T 3bfj_A           20 AISVVGERCQLL-GGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVT   98 (387)
T ss_dssp             GGGGHHHHHHHT-TCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHHc-CCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence            345566666777 789999999864   2   7899999998878776543      22    45566666778899986


Q ss_pred             cc
Q psy9357          94 NC   95 (132)
Q Consensus        94 Nc   95 (132)
                      =|
T Consensus        99 vG  100 (387)
T 3bfj_A           99 VG  100 (387)
T ss_dssp             EE
T ss_pred             eC
Confidence            54

>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A

Probab=82.02  E-value=5.4  Score=31.23  Aligned_cols=91  Identities=14%  Similarity=0.159  Sum_probs=62.5

Q ss_pred             ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhcc---CCcEEE--eC---CC-chHHHHHHHhhcCeee
Q psy9357          22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKR---TEIRIV--PS---DQ-SPHVDLAILSQANHFI   92 (132)
Q Consensus        22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~---~~~~vv--~l---~~-~~~vDl~Il~~A~~FI   92 (132)
                      +..|+.....+.+-++++.. +.++|.|..+.+.+...|+++++.   .++.|+  ..   .| .+++..+--..+|++|
T Consensus       118 r~~p~~~~~~~~~~~~~~~~-g~~~vaii~~~~~~g~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i~~~~~~vii  196 (393)
T 3om0_A          118 SLYPSNEDVSLAVSRILKSF-NYPSASLICAKAECLLRLEELVRGFLISKETLSVRMLDDSRDPTPLLKEIRDDKVSTII  196 (393)
T ss_dssp             ESSCCHHHHHHHHHHHHHHT-TSCCEEEEESSTTHHHHTHHHHHHHHHSSSCEEEEECC-CCCSHHHHHHHHHHTCSEEE
T ss_pred             EecCCHHHHHHHHHHHHHhC-CCcEEEEEEeCchHHHHHHHHHHhhhccCCeEEEEecCCCCCHHHHHHHHHhcCCeEEE
Confidence            45688887788888888887 999999999777776667666653   455443  23   23 6788888888999888


Q ss_pred             ecceeecchhhhhhhhcCCCC
Q psy9357          93 GNCISSFTAFVKRHRDVKGLP  113 (132)
Q Consensus        93 GNcvSSFTa~V~reR~~~G~p  113 (132)
                      --|...-...+.++=...|+.
T Consensus       197 ~~~~~~~~~~~~~~a~~~g~~  217 (393)
T 3om0_A          197 IDANASISHLVLRKASELGMT  217 (393)
T ss_dssp             EESCHHHHHHHHHHHHHTTTT
T ss_pred             EECCHHHHHHHHHHHHHcCcc
Confidence            766655555444443345654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1rrma_	385	Lactaldehyde reductase FucO {Escherichia coli [Tax	87.96
d1vlja_	398	NADH-dependent butanol dehydrogenase A (TM0820) {T	86.82
d1usga_	346	Leucine-binding protein {Escherichia coli [TaxId:	81.58

>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Lactaldehyde reductase FucO
species: Escherichia coli [TaxId: 562]

Probab=87.96  E-value=0.23  Score=38.60  Aligned_cols=70  Identities=13%  Similarity=0.078  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhccCCcEEEeC----CC------chHHHHHHHhhcCeeeec
Q psy9357          29 TVVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKRTEIRIVPS----DQ------SPHVDLAILSQANHFIGN   94 (132)
Q Consensus        29 ~I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l----~~------~~~vDl~Il~~A~~FIGN   94 (132)
                      ..+++|...++++ +.|+++|-||..    ..++++++.|+..++++..+    ++      ...++++--..+|..||=
T Consensus        16 g~l~~l~~~l~~~-G~k~~Livt~~~~~~~g~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~v~~~~~~~~~~~~D~Iiai   94 (385)
T d1rrma_          16 GAVGALTDEVKRR-GYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAI   94 (385)
T ss_dssp             TGGGGHHHHHHHH-TCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CHHHHHHHHHHHc-CCCEEEEEECcchhhCcHHHHHHHHHHHcCCeEEEEcCccCCCCHHHHHHHhhhhhccCCCEEEec
Confidence            3467788888898 999999999854    35789999999888766543    22      455666667789999986


Q ss_pred             ceeec
Q psy9357          95 CISSF   99 (132)
Q Consensus        95 cvSSF   99 (132)
                      |-=|-
T Consensus        95 GGGS~   99 (385)
T d1rrma_          95 GGGSP   99 (385)
T ss_dssp             ESHHH
T ss_pred             CCCch
Confidence            54443

>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: NADH-dependent butanol dehydrogenase A (TM0820)
species: Thermotoga maritima [TaxId: 2336]

Probab=86.82  E-value=0.53  Score=36.67  Aligned_cols=77  Identities=12%  Similarity=0.176  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHhCCCcEEEEecCCcc-----cHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeeec
Q psy9357          30 VVRQLKRVVREHGQIKYIFVATDNNN-----LNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIGN   94 (132)
Q Consensus        30 I~~~ik~~~~~~~~lk~VfIaTD~~~-----~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIGN   94 (132)
                      .+++|.++++++ +.++|+|-||...     ++++|++.|++.++.++.+      |.    ...++++--..+|..||=
T Consensus        21 ~~~~l~~~l~~~-g~~rvliVt~~~~~~~~g~~~~l~~~L~~~gi~~~~f~~v~~~pt~~~v~~~~~~~~~~~~D~IIav   99 (398)
T d1vlja_          21 TIPKIGEEIKNA-GIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGV   99 (398)
T ss_dssp             CGGGHHHHHHHT-TCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHHHHhc-CCCeEEEEECCcHHHHhhHHHHHHHHHHhcCCeEEEEcCccCCCCHHHHHHHhhhcccccCceEEec
Confidence            356688888888 8999998887542     5799999999888876643      22    455666666889999987


Q ss_pred             ceeecchhhhhhh
Q psy9357          95 CISSFTAFVKRHR  107 (132)
Q Consensus        95 cvSSFTa~V~reR  107 (132)
                      |--|--.-.|--.
T Consensus       100 GGGs~iD~aK~ia  112 (398)
T d1vlja_         100 GGGSVVDSAKAVA  112 (398)
T ss_dssp             ESHHHHHHHHHHH
T ss_pred             CCcchhhHHHHHH
Confidence            6655544444333

>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Leucine-binding protein
species: Escherichia coli [TaxId: 562]

Probab=81.58  E-value=2.7  Score=29.92  Aligned_cols=97  Identities=10%  Similarity=0.043  Sum_probs=65.5

Q ss_pred             ccCCCHHHHHHHHHHH-HHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---C----CC-chHHHHHHHhhc
Q psy9357          22 LCFPSVETVVRQLKRV-VREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---S----DQ-SPHVDLAILSQA   88 (132)
Q Consensus        22 ~C~Ps~~~I~~~ik~~-~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l----~~-~~~vDl~Il~~A   88 (132)
                      ...|+.......+..+ .+.. +.++|.|..+.+.    +.+.++++++..+++++.   +    ++ .+++..+--..+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~i~~~~~~~g~~~~~~~~~~~~~~g~~i~~~~~~~~~~~d~~~~~~~i~~~~~  194 (346)
T d1usga_         116 RTAGLDSSQGPTAAKYILETV-KPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENI  194 (346)
T ss_dssp             ECSCCGGGHHHHHHHHHHHTT-CCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTC
T ss_pred             cccccchhHHHHHHhhhhhcc-ccceeEEecCchhhhHHHHHHHhhhhhcccceEEEEEecCccccchhhHHHHhhccCC
Confidence            3345555555555554 5555 7888999886654    467778888888877764   2    22 678888888888


Q ss_pred             CeeeecceeecchhhhhhhhcCCCCCCcccC
Q psy9357          89 NHFIGNCISSFTAFVKRHRDVKGLPSSFWAF  119 (132)
Q Consensus        89 ~~FIGNcvSSFTa~V~reR~~~G~ps~F~g~  119 (132)
                      |+.+--+.......+.++-...|+...|.+.
T Consensus       195 d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~  225 (346)
T d1usga_         195 DFVYYGGYYPEMGQMLRQARSVGLKTQFMGP  225 (346)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred             CEEEEeccchhhhheeeccccccccceEEee
Confidence            8887777676666666666667776655554