Psyllid ID: psy9365

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MPGQFTGSTEVRILTPQELAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEELPPQRKNPYHVQQ
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHcccHHHHHHHHHHccccccccHHHHHHHHcccccccccccccccccccEEEEEcccccEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEccHHHHccccccEEEHHHHHccccccccHHHHHHHHccccccccccccccccEEEEEEEEEccccccccccccccHccccccccc
Coil and Loop (DISEMBL)
mpgqftgstevriltpqelAAGSQAWARKEQFVeaapvsggmgMHLLQKmgwqpgeglgknkegtvqplsldikfdrrglvskeelppqrknpyhvqq
Flexible Loop (DISEMBL)
mpgqftgstevriltpQELAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDrrglvskeelppqrknpyhvqq
Low Complexity Region (SEG)
MPGQFTGSTEVRILTPQELAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEELPPQRKNPYHVQQ
Disordered region (IsUnstruct)
*************************WARKEQFVEAAPVSGGMGMHLLQKMGW**********************************************
Disordered Region (DISOPRED)
*P**************************************GMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRR********************
Disordered Region (DISEMBL)
*********EVRILTPQELAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEELPPQRKNPYHVQQ
Disordered Region (DISPRO)
**GQFTGSTEVRILTPQELAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDR**L******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPGQFTGSTEVRILTPQELAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEELPPQRKNPYHVQQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
P18583	2426	Protein SON OS=Homo sapie	yes	N/A	0.836	0.033	0.614	3e-24
Q9QX47	2444	Protein SON OS=Mus muscul	yes	N/A	0.836	0.033	0.614	3e-24
Q6DGZ0	262	Coiled-coil domain-contai	no	N/A	0.530	0.198	0.442	0.0001
Q28H71	514	Zinc finger CCCH-type wit	no	N/A	0.520	0.099	0.431	0.0007
Q6C233	812	Protein SQS1 OS=Yarrowia	yes	N/A	0.397	0.048	0.461	0.0009

>sp|P18583|SON_HUMAN Protein SON OS=Homo sapiens GN=SON PE=1 SV=4

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 69/83 (83%), Gaps = 1/83 (1%)

Query: 1    MPGQFTGSTEVRILTPQELA-AGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLG 59
            +PGQFTGST V++LT ++LA  G+QAW +K+QF+ AAPV+GGMG  L++KMGW+ GEGLG
Sbjct: 2266 IPGQFTGSTGVQVLTQEQLANTGAQAWIKKDQFLRAAPVTGGMGAVLMRKMGWREGEGLG 2325

Query: 60   KNKEGTVQPLSLDIKFDRRGLVS 82
            KNKEG  +P+ +D K DR+GLV+
Sbjct: 2326 KNKEGNKEPILVDFKTDRKGLVA 2348

RNA-binding protein that acts as a mRNA splicing cofactor by promoting efficient splicing of transcripts that posses weak splice sites. Specifically promotes splicing of many cell-cycle and DNA-repair transcripts that posses weak splice sites, such as TUBG1, KATNB1, TUBGCP2, AURKB, PCNT, AKT1, RAD23A, and FANCG. Probably acts by facilitating the interaction between Serine/arginine-rich proteins such as SRSF2 and the RNA polymerase II. Also binds to DNA; binds to the consensus DNA sequence: 5'-GA[GT]AN[CG][AG]CC-3'. May indirectly repress hepatitis B virus (HBV) core promoter activity and transcription of HBV genes and production of HBV virions.
Homo sapiens (taxid: 9606)

>sp|Q9QX47|SON_MOUSE Protein SON OS=Mus musculus GN=Son PE=1 SV=2

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 69/83 (83%), Gaps = 1/83 (1%)

Query: 1    MPGQFTGSTEVRILTPQELA-AGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLG 59
            +PGQFTGST V++LT ++LA  G+QAW +K+QF+ AAPV+GGMG  L++KMGW+ GEGLG
Sbjct: 2284 IPGQFTGSTGVQVLTQEQLANTGAQAWIKKDQFLRAAPVTGGMGAVLMRKMGWREGEGLG 2343

Query: 60   KNKEGTVQPLSLDIKFDRRGLVS 82
            KNKEG  +P+ +D K DR+GLV+
Sbjct: 2344 KNKEGNKEPILVDFKTDRKGLVA 2366

RNA-binding protein that acts as a mRNA splicing cofactor by promoting efficient splicing of transcripts that posses weak splice sites. Specifically promotes splicing of many cell-cycle and DNA-repair transcripts that posses weak splice sites, such as TUBG1, KATNB1, TUBGCP2, AURKB, PCNT, AKT1, RAD23A, and FANCG. Probably acts by facilitating the interaction between Serine/arginine-rich proteins such as SRSF2 and the RNA polymerase II. Also binds to DNA; binds to the consensus DNA sequence: 5'-GA[GT]AN[CG][AG]CC-3' (By similarity). May also regulate the ghrelin signaling in hypothalamic neuron by acting as a negative regulator of GHSR expression.

Mus musculus (taxid: 10090)

>sp|Q6DGZ0|CCD75_DANRE Coiled-coil domain-containing protein 75 OS=Danio rerio GN=ccdc75 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)

Query: 29  KEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGL 80
           +E  ++++  S   G  LLQKMG++ G+GLGK   G V+P+ L+IK DR G+
Sbjct: 60  REAALQSSIGSQNKGFALLQKMGYKAGQGLGKEGAGRVEPVPLNIKTDRGGI 111

Danio rerio (taxid: 7955)

>sp|Q28H71|ZGPAT_XENTR Zinc finger CCCH-type with G patch domain-containing protein OS=Xenopus tropicalis GN=zgpat PE=2 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%)

Query: 19  LAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPL 69
           L AGS   A   QF      + G+G  LL +MG++ G+GLG+N EG V+P+
Sbjct: 295 LGAGSAGSAHSSQFGGWEAHTRGIGSKLLARMGYEIGKGLGRNAEGRVEPI 345

Transcription repressor that specifically binds the 5'-GGAG[GA]A[GA]A-3' consensus sequence. Represses transcription by recruiting the chromatin multiprotein complex NuRD to target promoters. Negatively regulates expression of EGFR, a gene involved in cell proliferation, survival and migration.

Xenopus tropicalis (taxid: 8364)

>sp|Q6C233|SQS1_YARLI Protein SQS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SQS1 PE=3 SV=1

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 42  MGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGL 80
           +G  LLQKMGW  GEGLG    G  +P+   +K  +RG+
Sbjct: 772 IGRLLLQKMGWTTGEGLGAQSRGISEPIIAKVKISKRGI 810

May be involved in splicing.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
332017864	808	Protein SON [Acromyrmex echinatior]	0.877	0.106	0.662	2e-29
345494516	930	PREDICTED: hypothetical protein LOC10011	0.877	0.092	0.697	2e-29
357623380	638	hypothetical protein KGM_22318 [Danaus p	0.897	0.137	0.704	3e-29
242014081	865	conserved hypothetical protein [Pediculu	0.908	0.102	0.617	5e-26
91093789	626	PREDICTED: similar to SON DNA-binding pr	0.857	0.134	0.642	5e-26
195330360	899	GM23818 [Drosophila sechellia] gi|194120	0.948	0.103	0.585	1e-25
195572230	899	GD18627 [Drosophila simulans] gi|1942000	0.948	0.103	0.585	1e-25
24645429	874	CG8273, isoform A [Drosophila melanogast	0.948	0.106	0.585	1e-25
25009833	886	AT18855p [Drosophila melanogaster]	0.948	0.104	0.585	1e-25
193627224	732	PREDICTED: hypothetical protein LOC10016	0.897	0.120	0.602	1e-25

>gi|332017864|gb|EGI58524.1| Protein SON [Acromyrmex echinatior]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 76/86 (88%)

Query: 1   MPGQFTGSTEVRILTPQELAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGK 60
           +PGQFTGST V++LTP EL++G QAWARK+Q V A P+SGGMGM LLQKMGW+PGEGLGK
Sbjct: 628 IPGQFTGSTGVKVLTPAELSSGYQAWARKDQLVSAQPLSGGMGMALLQKMGWRPGEGLGK 687

Query: 61  NKEGTVQPLSLDIKFDRRGLVSKEEL 86
           NKEG ++PL L++K D++GL+S++++
Sbjct: 688 NKEGALEPLQLEVKLDKKGLISEQDI 713

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494516|ref|XP_001601978.2| PREDICTED: hypothetical protein LOC100117848 isoform 1 [Nasonia vitripennis]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 73/86 (84%)

Query: 1   MPGQFTGSTEVRILTPQELAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGK 60
           +PGQFTGST  ++LTP EL +G QAWARK+Q + A PVSGGMGM LLQKMGW+PGEGLGK
Sbjct: 750 IPGQFTGSTGAKVLTPAELNSGHQAWARKDQLLTAQPVSGGMGMALLQKMGWRPGEGLGK 809

Query: 61  NKEGTVQPLSLDIKFDRRGLVSKEEL 86
           NKEGT+ PL L++K D+RGLVS E++
Sbjct: 810 NKEGTLVPLQLEVKLDKRGLVSNEDV 835

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623380|gb|EHJ74558.1| hypothetical protein KGM_22318 [Danaus plexippus]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 71/88 (80%)

Query: 3   GQFTGSTEVRILTPQELAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKNK 62
           GQFTGST   ILTP+ELA+G+QAWA+K+Q V AAPV GGMGMHLLQKMGW PG GLGK  
Sbjct: 464 GQFTGSTGAHILTPRELASGAQAWAKKDQLVRAAPVEGGMGMHLLQKMGWTPGRGLGKEG 523

Query: 63  EGTVQPLSLDIKFDRRGLVSKEELPPQR 90
            G +QPL L++K D RGL SKEE+ PQR
Sbjct: 524 TGALQPLLLEVKLDTRGLTSKEEVKPQR 551

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014081|ref|XP_002427726.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212512167|gb|EEB14988.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 55/89 (61%), Positives = 72/89 (80%)

Query: 3   GQFTGSTEVRILTPQELAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKNK 62
           G FTGST V++L+P EL  G+QAWAR++Q   A PV+GGMGM LLQKMGWQPGEGLGKNK
Sbjct: 682 GAFTGSTGVKVLSPSELCLGAQAWARRDQLKCATPVTGGMGMTLLQKMGWQPGEGLGKNK 741

Query: 63  EGTVQPLSLDIKFDRRGLVSKEELPPQRK 91
           EGT++PL L++K D++GL++ +E    +K
Sbjct: 742 EGTLEPLRLEVKMDKKGLLAPDEFRKGKK 770

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093789|ref|XP_967550.1| PREDICTED: similar to SON DNA-binding protein [Tribolium castaneum]

 Score =  121 bits (303), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 54/84 (64%), Positives = 70/84 (83%)

Query: 2   PGQFTGSTEVRILTPQELAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKN 61
           PGQFTG+T  ++L+  EL++G QAWA+K+Q V A PVSGGMGMHLLQKMGW+PGEGLGK 
Sbjct: 452 PGQFTGTTGAQVLSQAELSSGYQAWAKKDQLVTATPVSGGMGMHLLQKMGWKPGEGLGKE 511

Query: 62  KEGTVQPLSLDIKFDRRGLVSKEE 85
           K G ++PL L++K D++GLV+ EE
Sbjct: 512 KTGALEPLLLEVKLDKKGLVANEE 535

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195330360|ref|XP_002031872.1| GM23818 [Drosophila sechellia] gi|194120815|gb|EDW42858.1| GM23818 [Drosophila sechellia]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 72/94 (76%), Gaps = 1/94 (1%)

Query: 1   MPGQFTGSTEVRILTPQELAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGK 60
           +PGQFTGST  +++   EL +G Q W RK+Q     PV+GGMGM LLQKMGW+PGEGLG+
Sbjct: 692 LPGQFTGSTGAQVMKAHELNSGPQLWVRKDQMTSTKPVTGGMGMALLQKMGWKPGEGLGR 751

Query: 61  NKEGTVQPLSLDIKFDRRGLVSKEEL-PPQRKNP 93
            K G++QPL LD+K D+RGLVS+++L PPQ + P
Sbjct: 752 CKTGSLQPLLLDVKLDKRGLVSRDDLRPPQTRAP 785

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195572230|ref|XP_002104099.1| GD18627 [Drosophila simulans] gi|194200026|gb|EDX13602.1| GD18627 [Drosophila simulans]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 72/94 (76%), Gaps = 1/94 (1%)

Query: 1   MPGQFTGSTEVRILTPQELAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGK 60
           +PGQFTGST  +++   EL +G Q W RK+Q     PV+GGMGM LLQKMGW+PGEGLG+
Sbjct: 692 LPGQFTGSTGAQVMKAHELNSGPQLWVRKDQMTSTKPVTGGMGMALLQKMGWKPGEGLGR 751

Query: 61  NKEGTVQPLSLDIKFDRRGLVSKEEL-PPQRKNP 93
            K G++QPL LD+K D+RGLVS+++L PPQ + P
Sbjct: 752 CKTGSLQPLLLDVKLDKRGLVSRDDLRPPQTRAP 785

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24645429|ref|NP_649914.1| CG8273, isoform A [Drosophila melanogaster] gi|442618276|ref|NP_001262426.1| CG8273, isoform B [Drosophila melanogaster] gi|7299212|gb|AAF54409.1| CG8273, isoform A [Drosophila melanogaster] gi|440217260|gb|AGB95808.1| CG8273, isoform B [Drosophila melanogaster]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 72/94 (76%), Gaps = 1/94 (1%)

Query: 1   MPGQFTGSTEVRILTPQELAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGK 60
           +PGQFTGST  +++   EL +G Q W RK+Q     PV+GGMGM LLQKMGW+PGEGLG+
Sbjct: 667 LPGQFTGSTGAQVMKAHELNSGPQLWVRKDQMTSTKPVTGGMGMALLQKMGWKPGEGLGR 726

Query: 61  NKEGTVQPLSLDIKFDRRGLVSKEEL-PPQRKNP 93
            K G++QPL LD+K D+RGLVS+++L PPQ + P
Sbjct: 727 CKTGSLQPLLLDVKLDKRGLVSRDDLRPPQMRAP 760

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|25009833|gb|AAN71087.1| AT18855p [Drosophila melanogaster]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 72/94 (76%), Gaps = 1/94 (1%)

Query: 1   MPGQFTGSTEVRILTPQELAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGK 60
           +PGQFTGST  +++   EL +G Q W RK+Q     PV+GGMGM LLQKMGW+PGEGLG+
Sbjct: 679 LPGQFTGSTGAQVMKAHELNSGPQLWVRKDQMTSTKPVTGGMGMALLQKMGWKPGEGLGR 738

Query: 61  NKEGTVQPLSLDIKFDRRGLVSKEEL-PPQRKNP 93
            K G++QPL LD+K D+RGLVS+++L PPQ + P
Sbjct: 739 CKTGSLQPLLLDVKLDKRGLVSRDDLRPPQMRAP 772

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193627224|ref|XP_001952647.1| PREDICTED: hypothetical protein LOC100161769 [Acyrthosiphon pisum]

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/88 (60%), Positives = 71/88 (80%)

Query: 3   GQFTGSTEVRILTPQELAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKNK 62
           GQFTG T  ++LTP EL+AG Q W +K+Q   +APV+ G+G+HLLQKMGW+PGEGLGKN+
Sbjct: 551 GQFTGHTGAKVLTPAELSAGFQTWVKKDQLKNSAPVNSGIGIHLLQKMGWKPGEGLGKNQ 610

Query: 63  EGTVQPLSLDIKFDRRGLVSKEELPPQR 90
            G+++PL LD+K D+RGLV++EEL   R
Sbjct: 611 SGSLEPLLLDVKMDKRGLVAEEELQGSR 638

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
FB|FBgn0037716	886	CG8273 [Drosophila melanogaste	0.948	0.104	0.585	5e-26
UNIPROTKB|E1BX00	484	E1BX00 "Uncharacterized protei	1.0	0.202	0.565	1.3e-25
UNIPROTKB|J3QSZ5	454	SON "Protein SON" [Homo sapien	0.959	0.207	0.557	9.3e-25
UNIPROTKB|H7C1M2	1454	SON "Protein SON" [Homo sapien	0.959	0.064	0.557	1.5e-23
UNIPROTKB|F1MYN8	2136	SON "Uncharacterized protein"	0.959	0.044	0.557	2.4e-23
UNIPROTKB|I3L9C9	2414	SON "Uncharacterized protein"	0.959	0.038	0.557	2.8e-23
UNIPROTKB|E2RRQ0	2415	SON "Uncharacterized protein"	0.959	0.038	0.557	2.8e-23
UNIPROTKB|P18583	2426	SON "Protein SON" [Homo sapien	0.959	0.038	0.557	2.8e-23
UNIPROTKB|E2RRP5	2431	SON "Uncharacterized protein"	0.959	0.038	0.557	2.8e-23
MGI|MGI:98353	2444	Son "Son DNA binding protein"	0.959	0.038	0.557	2.9e-23

FB|FBgn0037716 CG8273 [Drosophila melanogaster (taxid:7227)]

 Score = 305 (112.4 bits), Expect = 5.0e-26, P = 5.0e-26
 Identities = 55/94 (58%), Positives = 72/94 (76%)

Query:     1 MPGQFTGSTEVRILTPQELAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGK 60
             +PGQFTGST  +++   EL +G Q W RK+Q     PV+GGMGM LLQKMGW+PGEGLG+
Sbjct:   679 LPGQFTGSTGAQVMKAHELNSGPQLWVRKDQMTSTKPVTGGMGMALLQKMGWKPGEGLGR 738

Query:    61 NKEGTVQPLSLDIKFDRRGLVSKEEL-PPQRKNP 93
              K G++QPL LD+K D+RGLVS+++L PPQ + P
Sbjct:   739 CKTGSLQPLLLDVKLDKRGLVSRDDLRPPQMRAP 772

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS

UNIPROTKB|E1BX00 E1BX00 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 294 (108.6 bits), Expect = 1.3e-25, P = 1.3e-25
 Identities = 56/99 (56%), Positives = 74/99 (74%)

Query:     1 MPGQFTGSTEVRILTPQELA-AGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLG 59
             +PGQFTGST  +IL+  EL  +G QAW RK+QF+ AAPV+GGMG  L++KMGW+ GEGLG
Sbjct:   292 IPGQFTGSTGAQILSSDELTNSGPQAWIRKDQFLRAAPVTGGMGAQLMRKMGWREGEGLG 351

Query:    60 KNKEGTVQPLSLDIKFDRRGLVSKEELPPQRKNPYHVQQ 98
             KNKEG+V+P+ +D K DR+GLV+  E   +R   Y V +
Sbjct:   352 KNKEGSVEPIMVDFKTDRKGLVAVGEKAQKRSGHYVVMK 390

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043484 "regulation of RNA splicing" evidence=IEA

GO:0050733 "RS domain binding" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

UNIPROTKB|J3QSZ5 SON "Protein SON" [Homo sapiens (taxid:9606)]

 Score = 285 (105.4 bits), Expect = 9.3e-25, P = 9.3e-25
 Identities = 53/95 (55%), Positives = 73/95 (76%)

Query:     1 MPGQFTGSTEVRILTPQELA-AGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLG 59
             +PGQFTGST V++LT ++LA  G+QAW +K+QF+ AAPV+GGMG  L++KMGW+ GEGLG
Sbjct:   294 IPGQFTGSTGVQVLTQEQLANTGAQAWIKKDQFLRAAPVTGGMGAVLMRKMGWREGEGLG 353

Query:    60 KNKEGTVQPLSLDIKFDRRGLVSKEELPPQRKNPY 94
             KNKEG  +P+ +D K DR+GLV+  E   +R   +
Sbjct:   354 KNKEGNKEPILVDFKTDRKGLVAVGERAQKRSGNF 388

GO:0003725 "double-stranded RNA binding" evidence=IEA

UNIPROTKB|H7C1M2 SON "Protein SON" [Homo sapiens (taxid:9606)]

 Score = 285 (105.4 bits), Expect = 1.5e-23, P = 1.5e-23
 Identities = 53/95 (55%), Positives = 73/95 (76%)

Query:     1 MPGQFTGSTEVRILTPQELA-AGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLG 59
             +PGQFTGST V++LT ++LA  G+QAW +K+QF+ AAPV+GGMG  L++KMGW+ GEGLG
Sbjct:  1261 IPGQFTGSTGVQVLTQEQLANTGAQAWIKKDQFLRAAPVTGGMGAVLMRKMGWREGEGLG 1320

Query:    60 KNKEGTVQPLSLDIKFDRRGLVSKEELPPQRKNPY 94
             KNKEG  +P+ +D K DR+GLV+  E   +R   +
Sbjct:  1321 KNKEGNKEPILVDFKTDRKGLVAVGERAQKRSGNF 1355

GO:0003725 "double-stranded RNA binding" evidence=IEA

UNIPROTKB|F1MYN8 SON "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 285 (105.4 bits), Expect = 2.4e-23, P = 2.4e-23
 Identities = 53/95 (55%), Positives = 73/95 (76%)

Query:     1 MPGQFTGSTEVRILTPQELA-AGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLG 59
             +PGQFTGST V++LT ++LA  G+QAW +K+QF+ AAPV+GGMG  L++KMGW+ GEGLG
Sbjct:  1943 IPGQFTGSTGVQVLTQEQLANTGAQAWIKKDQFLRAAPVTGGMGAVLMRKMGWKEGEGLG 2002

Query:    60 KNKEGTVQPLSLDIKFDRRGLVSKEELPPQRKNPY 94
             KNKEG  +P+ +D K DR+GLV+  E   +R   +
Sbjct:  2003 KNKEGNKEPILVDFKTDRKGLVAVGERAQKRSGNF 2037

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0050733 "RS domain binding" evidence=IEA

GO:0043484 "regulation of RNA splicing" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

UNIPROTKB|I3L9C9 SON "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 285 (105.4 bits), Expect = 2.8e-23, P = 2.8e-23
 Identities = 53/95 (55%), Positives = 73/95 (76%)

Query:     1 MPGQFTGSTEVRILTPQELA-AGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLG 59
             +PGQFTGST V++LT ++LA  G+QAW +K+QF+ AAPV+GGMG  L++KMGW+ GEGLG
Sbjct:  2254 IPGQFTGSTGVQVLTQEQLANTGAQAWIKKDQFLRAAPVTGGMGAVLMRKMGWREGEGLG 2313

Query:    60 KNKEGTVQPLSLDIKFDRRGLVSKEELPPQRKNPY 94
             KNKEG  +P+ +D K DR+GLV+  E   +R   +
Sbjct:  2314 KNKEGNKEPILVDFKTDRKGLVAVGERAQKRSGNF 2348

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0050733 "RS domain binding" evidence=IEA

GO:0043484 "regulation of RNA splicing" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

UNIPROTKB|E2RRQ0 SON "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 285 (105.4 bits), Expect = 2.8e-23, P = 2.8e-23
 Identities = 53/95 (55%), Positives = 73/95 (76%)

Query:     1 MPGQFTGSTEVRILTPQELA-AGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLG 59
             +PGQFTGST V++LT ++LA  G+QAW +K+QF+ AAPV+GGMG  L++KMGW+ GEGLG
Sbjct:  2255 IPGQFTGSTGVQVLTQEQLANTGAQAWIKKDQFLRAAPVTGGMGAVLMRKMGWREGEGLG 2314

Query:    60 KNKEGTVQPLSLDIKFDRRGLVSKEELPPQRKNPY 94
             KNKEG  +P+ +D K DR+GLV+  E   +R   +
Sbjct:  2315 KNKEGNKEPILVDFKTDRKGLVAVGERAQKRSGNF 2349

GO:0003725 "double-stranded RNA binding" evidence=IEA

UNIPROTKB|P18583 SON "Protein SON" [Homo sapiens (taxid:9606)]

 Score = 285 (105.4 bits), Expect = 2.8e-23, P = 2.8e-23
 Identities = 53/95 (55%), Positives = 73/95 (76%)

Query:     1 MPGQFTGSTEVRILTPQELA-AGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLG 59
             +PGQFTGST V++LT ++LA  G+QAW +K+QF+ AAPV+GGMG  L++KMGW+ GEGLG
Sbjct:  2266 IPGQFTGSTGVQVLTQEQLANTGAQAWIKKDQFLRAAPVTGGMGAVLMRKMGWREGEGLG 2325

Query:    60 KNKEGTVQPLSLDIKFDRRGLVSKEELPPQRKNPY 94
             KNKEG  +P+ +D K DR+GLV+  E   +R   +
Sbjct:  2326 KNKEGNKEPILVDFKTDRKGLVAVGERAQKRSGNF 2360

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0050733 "RS domain binding" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

GO:0003676 "nucleic acid binding" evidence=TAS

GO:0016607 "nuclear speck" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0006397 "mRNA processing" evidence=IDA

GO:0043484 "regulation of RNA splicing" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000910 "cytokinesis" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|E2RRP5 SON "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 285 (105.4 bits), Expect = 2.8e-23, P = 2.8e-23
 Identities = 53/95 (55%), Positives = 73/95 (76%)

Query:     1 MPGQFTGSTEVRILTPQELA-AGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLG 59
             +PGQFTGST V++LT ++LA  G+QAW +K+QF+ AAPV+GGMG  L++KMGW+ GEGLG
Sbjct:  2271 IPGQFTGSTGVQVLTQEQLANTGAQAWIKKDQFLRAAPVTGGMGAVLMRKMGWREGEGLG 2330

Query:    60 KNKEGTVQPLSLDIKFDRRGLVSKEELPPQRKNPY 94
             KNKEG  +P+ +D K DR+GLV+  E   +R   +
Sbjct:  2331 KNKEGNKEPILVDFKTDRKGLVAVGERAQKRSGNF 2365

GO:0003725 "double-stranded RNA binding" evidence=IEA

MGI|MGI:98353 Son "Son DNA binding protein" [Mus musculus (taxid:10090)]

 Score = 285 (105.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 53/95 (55%), Positives = 73/95 (76%)

Query:     1 MPGQFTGSTEVRILTPQELA-AGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLG 59
             +PGQFTGST V++LT ++LA  G+QAW +K+QF+ AAPV+GGMG  L++KMGW+ GEGLG
Sbjct:  2284 IPGQFTGSTGVQVLTQEQLANTGAQAWIKKDQFLRAAPVTGGMGAVLMRKMGWREGEGLG 2343

Query:    60 KNKEGTVQPLSLDIKFDRRGLVSKEELPPQRKNPY 94
             KNKEG  +P+ +D K DR+GLV+  E   +R   +
Sbjct:  2344 KNKEGNKEPILVDFKTDRKGLVAVGERAQKRSGNF 2378

GO:0000226 "microtubule cytoskeleton organization" evidence=ISO

GO:0000910 "cytokinesis" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISO

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016607 "nuclear speck" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043484 "regulation of RNA splicing" evidence=ISO

GO:0050733 "RS domain binding" evidence=IPI

GO:0051726 "regulation of cell cycle" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9QX47	SON_MOUSE	No assigned EC number	0.6144	0.8367	0.0335	yes	N/A
P18583	SON_HUMAN	No assigned EC number	0.6144	0.8367	0.0338	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	98
pfam01585	45	pfam01585, G-patch, G-patch domain	1e-12
smart00443	47	smart00443, G_patch, glycine rich nucleic binding	2e-11
pfam12656	79	pfam12656, G-patch_2, DExH-box splicing factor bin	2e-06

>gnl|CDD|144978 pfam01585, G-patch, G-patch domain

 Score = 56.4 bits (137), Expect = 1e-12
 Identities = 22/42 (52%), Positives = 31/42 (73%)

Query: 40 GGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLV 81
            +G  LLQKMGW+PG+GLGKN++G  +P+   I+ DR+GL 
Sbjct: 2  SNIGFKLLQKMGWKPGQGLGKNEQGITEPIEAKIRPDRKGLG 43

This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines. Length = 45

>gnl|CDD|197727 smart00443, G_patch, glycine rich nucleic binding domain

 Score = 53.7 bits (130), Expect = 2e-11
 Identities = 23/44 (52%), Positives = 34/44 (77%)

Query: 37 PVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGL 80
            +  +G  LL+KMGW+ G+GLGKN++G V+P+S +IK DR+GL
Sbjct: 1  ISTSNIGAKLLRKMGWKEGQGLGKNEQGIVEPISAEIKKDRKGL 44

A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins. Length = 47

>gnl|CDD|221692 pfam12656, G-patch_2, DExH-box splicing factor binding site

 Score = 41.6 bits (98), Expect = 2e-06
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 5/45 (11%)

Query: 34 EAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRR 78
          EA PV    G  LL+ MGW+ G+G+GKN +G V+P     +  RR
Sbjct: 26 EAVPVEE-FGAALLRGMGWKEGQGIGKNNKGDVKP----KEPKRR 65

Yeast Spp2, a G-patch protein and spliceosome component, interacts with the ATP-dependent DExH-box splicing factor Prp2. As this interaction involves the G-patch sequence in Spp2 and is required for the recruitment of Prp2 to the spliceosome before the first catalytic step of splicing, it is proposed that Spp2 might be an accessory factor that confers spliceosome specificity on Prp2. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
PF01585	45	G-patch: G-patch domain; InterPro: IPR000467 The D	99.69
smart00443	47	G_patch glycine rich nucleic binding domain. A pre	99.58
KOG2809|consensus	326		99.3
KOG0965|consensus	988		99.16
KOG2184|consensus	767		99.12
PF12656	77	G-patch_2: DExH-box splicing factor binding site	98.96
KOG2384|consensus	223		98.89
KOG2185|consensus	486		98.88
KOG3673|consensus	845		98.64
KOG1996|consensus	378		98.46
KOG1994|consensus	268		98.28
KOG0154|consensus	573		98.25
KOG4315|consensus	455		97.74
KOG4368|consensus	757		97.2
KOG2138|consensus	883		96.95
KOG1994|consensus	268		95.32

>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function

Probab=99.69  E-value=2.9e-17  Score=96.40  Aligned_cols=45  Identities=44%  Similarity=0.982  Sum_probs=43.0

Q ss_pred             CCcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeec
Q psy9365          39 SGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSK   83 (98)
Q Consensus        39 ~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~   83 (98)
                      +++||++||++|||++|+|||++.+||++||++..+.++.|||++
T Consensus         1 t~~~g~~lm~kmGw~~G~GLGk~~~G~~~pi~~~~~~~~~GlG~~   45 (45)
T PF01585_consen    1 TSSIGFKLMKKMGWKPGQGLGKNGQGIAEPIEVKKKKDRKGLGAE   45 (45)
T ss_pred             CCcHHHHHHHHCCCCCCcCCCcCCccCCcceEEeeEcCCccccCC
Confidence            479999999999999999999999999999999999999999974

This domain has seven highly conserved glycines. A multiple alignment of a small subset of D111/G-patch domains is shown in Fig. 2b of [].; GO: 0003676 nucleic acid binding, 0005622 intracellular

>smart00443 G_patch glycine rich nucleic binding domain

Probab=99.58  E-value=2.6e-15  Score=88.08  Aligned_cols=46  Identities=50%  Similarity=0.983  Sum_probs=43.3

Q ss_pred             CCCcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeec
Q psy9365          38 VSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSK   83 (98)
Q Consensus        38 ~~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~   83 (98)
                      +++++|++||.+|||++|+|||++.+|+++||++..+.++.|||+.
T Consensus         2 ~~~~~g~~~l~~mGw~~G~GLG~~~~g~~~pi~~~~~~~~~GlG~~   47 (47)
T smart00443        2 STSNIGYKLLRKMGWKEGQGLGKNEQGIVEPISAEIKKDRKGLGAE   47 (47)
T ss_pred             CcccHHHHHHHHcCCCCCCcCCCCCCcCccceeEeeccCCcCcCCC
Confidence            4679999999999999999999999999999999999999999973

A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.

>KOG2809|consensus

Probab=99.30  E-value=1.2e-12  Score=103.45  Aligned_cols=63  Identities=33%  Similarity=0.568  Sum_probs=55.0

Q ss_pred             HHHHHhhhhhhcCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeecCCC
Q psy9365          24 QAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEEL   86 (98)
Q Consensus        24 ~a~~kr~~~~~~~~~~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~~~~   86 (98)
                      |.|.--.+...|.++.+.||++||.+|||.+|.|||++.||++.||.|.++.+..|||++...
T Consensus        10 qk~~~dp~n~~w~nd~~~fg~KlLekmGW~eG~GLG~~~qG~~~~IKvs~K~d~~GLGa~~~n   72 (326)
T KOG2809|consen   10 QKIAVDPRNTAWSNDDSRFGKKLLEKMGWSEGDGLGKNEQGITDPIKVSLKNDTLGLGADKNN   72 (326)
T ss_pred             cccccCCccchhcccchHHHHHHHHHcCCccCCcccccccCCccceEEEeccCCcccCccccc
Confidence            444444555667778899999999999999999999999999999999999999999998665

>KOG0965|consensus

Probab=99.16  E-value=1.9e-11  Score=105.13  Aligned_cols=83  Identities=28%  Similarity=0.439  Sum_probs=63.9

Q ss_pred             ccccccCCHHHHh----hchHHHHHh----hhhhhcCCCCCcHHHHHHHhcCCCCCCCCCCCCCCcccccee-eeecCCc
Q psy9365           8 STEVRILTPQELA----AGSQAWARK----EQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSL-DIKFDRR   78 (98)
Q Consensus         8 ~~~~~~~~~~~l~----~g~~a~~kr----~~~~~~~~~~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~-~~k~~~~   78 (98)
                      -+.-.|+..+||+    ++.....+|    ..+....+...|+|++||+||||++|+|||..++||.+||.+ ..+.++.
T Consensus       866 HhiGDflPpeEL~KFme~~~a~k~~rkpd~sdyke~KLt~dNiGfQMLqKMGWKEGeGLGS~gkGI~dPVnkg~~~~~g~  945 (988)
T KOG0965|consen  866 HHIGDFLPPEELAKFMERGRAMKKKRKPDDSDYKEQKLTDDNIGFQMLQKMGWKEGEGLGSLGKGIRDPVNKGAAGSLGW  945 (988)
T ss_pred             cccCCcCCHHHHHHHHHhhhhhhhccCCChHHHHHhhccccchHHHHHHHhCccccccccccCcccccchhhcccccCCc
Confidence            4667899999999    333322222    234455667899999999999999999999999999999987 6778899


Q ss_pred             eeeecCCCCCCC
Q psy9365          79 GLVSKEELPPQR   90 (98)
Q Consensus        79 GLG~~~~~~~~~   90 (98)
                      |+|.+.....+.
T Consensus       946 G~G~s~pael~p  957 (988)
T KOG0965|consen  946 GWGGSQPAELQP  957 (988)
T ss_pred             ccccCCccccCc
Confidence            999876654443

>KOG2184|consensus

Probab=99.12  E-value=4e-11  Score=103.08  Aligned_cols=57  Identities=35%  Similarity=0.619  Sum_probs=51.7

Q ss_pred             hcCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeecCCCCCCC
Q psy9365          34 EAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEELPPQR   90 (98)
Q Consensus        34 ~~~~~~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~~~~~~~~   90 (98)
                      .+..++.+||.|||++|||++|+|||++.|||++||++.+++.+.|+|+-......+
T Consensus       110 ~~e~~t~gig~Kll~kMGYkpG~GLGkn~qGIv~Pieaq~Rp~rgg~Gay~~e~~~s  166 (767)
T KOG2184|consen  110 DFEKGTKGIGAKLLEKMGYKPGKGLGKNAQGIVAPIEAQLRPGRGGLGAYGFETEAS  166 (767)
T ss_pred             hhhhcccchhHHHHHHcCCccccccCccccccccHHhcccCccCccccccccccccc
Confidence            456678999999999999999999999999999999999999999999987766654

>PF12656 G-patch_2: DExH-box splicing factor binding site

Probab=98.96  E-value=6.7e-10  Score=71.85  Aligned_cols=46  Identities=41%  Similarity=0.749  Sum_probs=43.5

Q ss_pred             CcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeecCC
Q psy9365          40 GGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEE   85 (98)
Q Consensus        40 ~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~~~   85 (98)
                      ..||..||+-|||++++++|++.++.+.|+....|..+.|||+...
T Consensus        30 e~FG~AlLRGMGW~~~~~~g~~~~~~~~~~~~~~Rp~~lGLGA~~~   75 (77)
T PF12656_consen   30 EEFGAALLRGMGWKPGEGIGKNKKKSVKPVEPKRRPKGLGLGAKPA   75 (77)
T ss_pred             HHHHHHHHHHcCCCCCCCCCCCcccccCcccccccccCcCCCcCCC
Confidence            4799999999999999999999999999999999999999999764

>KOG2384|consensus

Probab=98.89  E-value=7.3e-10  Score=83.28  Aligned_cols=57  Identities=30%  Similarity=0.568  Sum_probs=50.7

Q ss_pred             CCCCcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeecCCCCCCCCCCCc
Q psy9365          37 PVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEELPPQRKNPYH   95 (98)
Q Consensus        37 ~~~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~~~~~~~~~~~~~   95 (98)
                      +..+|+|+++|.+.||.++.|||.+.+|+..||.+.++.++.|||++..  +.+..+|.
T Consensus       125 i~pks~GyrLl~~~GW~pe~GLGp~~~Grr~PvrTvlkkdr~GLG~e~~--~~rVthfg  181 (223)
T KOG2384|consen  125 IKPKSLGYRLLSQYGWSPEAGLGPENQGRRAPVRTVLKKDRIGLGTEID--QPRVTHFG  181 (223)
T ss_pred             CCCCCchHHHHHhcCCCcccCCCccccCcccchhHHHhhcccccchhhc--cccccccc
Confidence            3468999999999999999999999999999999999999999999877  55555554

>KOG2185|consensus

Probab=98.88  E-value=2.4e-10  Score=93.13  Aligned_cols=59  Identities=29%  Similarity=0.443  Sum_probs=50.9

Q ss_pred             hhhhhcCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeecCCCCC
Q psy9365          30 EQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEELPP   88 (98)
Q Consensus        30 ~~~~~~~~~~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~~~~~~   88 (98)
                      ..+..|+.++-+||.|||.||||..|.|||++++||++||.+.+-+.+..|..+.+.++
T Consensus       287 ~~fakWe~hTRGIgsKLM~kMGY~~G~GLG~~g~GiV~pI~a~vlp~grSLDecme~kq  345 (486)
T KOG2185|consen  287 ALFAKWENHTRGIGSKLMAKMGYREGMGLGVSGQGIVNPILAKVLPAGRSLDECMEEKQ  345 (486)
T ss_pred             HHHhhhccccchHHHHHHHHhchhhccccCcCCCccccchhhhhccCCCCHHHHHHHHH
Confidence            45667888899999999999999999999999999999999999888877776654433

>KOG3673|consensus

Probab=98.64  E-value=1.2e-08  Score=86.47  Aligned_cols=51  Identities=31%  Similarity=0.508  Sum_probs=46.2

Q ss_pred             CCcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeecCCCCCC
Q psy9365          39 SGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEELPPQ   89 (98)
Q Consensus        39 ~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~~~~~~~   89 (98)
                      .+++..+||.|||++.|+||||.+||+.+||.+.....|.|||.......+
T Consensus        82 y~~va~~lMakMG~~~geGLGK~~QGr~epi~as~Q~GRrGlGl~l~~~~~  132 (845)
T KOG3673|consen   82 YLTVAERLMAKMGHKAGEGLGKHGQGRSEPIAASTQRGRRGLGLNLKATAR  132 (845)
T ss_pred             cchHHHHHHHHhCccccccccccCCCccchhhhhhhccccccCccchhhhh
Confidence            678999999999999999999999999999999999999999988644333

>KOG1996|consensus

Probab=98.46  E-value=1.2e-07  Score=75.27  Aligned_cols=39  Identities=33%  Similarity=0.655  Sum_probs=36.1

Q ss_pred             cHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCce
Q psy9365          41 GMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRG   79 (98)
Q Consensus        41 ~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~G   79 (98)
                      .++++||+||||++|+||||++||+..++.++....|.|
T Consensus       213 tvA~~im~k~G~keGqGLGKsEQGlsTalsveKT~~rgG  251 (378)
T KOG1996|consen  213 TVAHKIMQKYGFKEGQGLGKSEQGLSTALSVEKTSKRGG  251 (378)
T ss_pred             hHHHHHHHHhCcccccCcCccccccccceeeeeccccCc
Confidence            467999999999999999999999999999988877877

>KOG1994|consensus

Probab=98.28  E-value=3.6e-07  Score=70.17  Aligned_cols=54  Identities=30%  Similarity=0.532  Sum_probs=49.0

Q ss_pred             CCCcHHHHHHHhcCCCCCCCCCCCCCC---ccccceeeeecCCceeeecCCCCCCCC
Q psy9365          38 VSGGMGMHLLQKMGWQPGEGLGKNKEG---TVQPLSLDIKFDRRGLVSKEELPPQRK   91 (98)
Q Consensus        38 ~~~~~G~kmL~kmGw~~G~GLGk~~qG---i~~PI~~~~k~~~~GLG~~~~~~~~~~   91 (98)
                      -..++|+.+|.+|||++|.-||+...+   +++||.+.++..+.|+|.+....+.+.
T Consensus        79 ~~e~~gf~lm~~Mg~kpg~~lgkq~e~~~~r~epI~~dI~~~r~g~G~ed~~~~~~~  135 (268)
T KOG1994|consen   79 RAEKPGFSLMNDMGMKPGRFLGKQSEMKNKRLEPIWYDIQVAREGMGDEDLYNPGED  135 (268)
T ss_pred             cccCcChHHHHHhCCCccchhccccccccccccceeehHHHHhhccCcccccccccc
Confidence            378999999999999999999999999   999999999999999999877666554

>KOG0154|consensus

Probab=98.25  E-value=6.4e-07  Score=74.69  Aligned_cols=50  Identities=34%  Similarity=0.636  Sum_probs=47.1

Q ss_pred             hcCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeec
Q psy9365          34 EAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSK   83 (98)
Q Consensus        34 ~~~~~~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~   83 (98)
                      ..++.++|+|.+||++|||.+|+|||+..+|+.+||+...+..+.|||+.
T Consensus       506 ~~~~~~sn~~~~~l~~~gw~~g~Glg~~~~g~~~~~e~~~~~~~~~lg~~  555 (573)
T KOG0154|consen  506 EPPIDTSNVGNRMLQSMGWKEGSGLGKKNQGIKEPIEAEGRDRGAGLGAK  555 (573)
T ss_pred             cccCCCCccchhhhhccCcccccccccccCCCcccccccccccCCCCCcc
Confidence            44567899999999999999999999999999999999999999999998

>KOG4315|consensus

Probab=97.74  E-value=2.4e-05  Score=64.32  Aligned_cols=49  Identities=37%  Similarity=0.714  Sum_probs=40.0

Q ss_pred             CcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeecCCCCCC
Q psy9365          40 GGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEELPPQ   89 (98)
Q Consensus        40 ~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~~~~~~~   89 (98)
                      ..||..||+-|||++|.|+|++.|+ +.+....+++...|||+....++.
T Consensus       154 e~FGlAmLrG~GWkpg~gigk~~q~-v~~~~~~~rpkglGLGa~~~~~~~  202 (455)
T KOG4315|consen  154 EGFGLAMLRGMGWKPGPGIGKNKQD-VKIKEPFLRPKGLGLGADPALKPK  202 (455)
T ss_pred             hHHHHHHHhcCCCCCCCCcCcCCcc-ccccccccCCCCcccCCCcccccc
Confidence            5799999999999999999999555 444445789999999999665543

>KOG4368|consensus

Probab=97.20  E-value=0.00022  Score=61.04  Aligned_cols=47  Identities=30%  Similarity=0.573  Sum_probs=39.4

Q ss_pred             CCCCcHHHHHHHhcCCCCCCCCCCCCCCcccccee-eeec---CCceeeecC
Q psy9365          37 PVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSL-DIKF---DRRGLVSKE   84 (98)
Q Consensus        37 ~~~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~-~~k~---~~~GLG~~~   84 (98)
                      +.++|+|.+||.||||. |.|||..++||.+||.. .++.   -.+|+|+..
T Consensus       684 lse~NKGhQml~KMGWs-G~GLGak~qGI~DPiSGGEVRdR~E~yKGvG~~l  734 (757)
T KOG4368|consen  684 LGEENKGHQMLVKMGWS-GSGLGAKEQGIQDPISGGEVRDRWEQYKGVGVAL  734 (757)
T ss_pred             cccccchhhhHhhcCcc-cCCcccccccccCcccCccccchhhhhcccCccc
Confidence            46899999999999999 99999999999999965 3443   367888765

>KOG2138|consensus

Probab=96.95  E-value=0.00052  Score=59.77  Aligned_cols=23  Identities=52%  Similarity=1.230  Sum_probs=21.0

Q ss_pred             CCCCcHHHHHHHhcCCCCCCCCC
Q psy9365          37 PVSGGMGMHLLQKMGWQPGEGLG   59 (98)
Q Consensus        37 ~~~~~~G~kmL~kmGw~~G~GLG   59 (98)
                      ++..+||.+||.+|||++|+|+|
T Consensus       145 Pvs~sIgvrlLrsMGWr~GqgIg  167 (883)
T KOG2138|consen  145 PVSDSIGVRLLRSMGWREGQGIG  167 (883)
T ss_pred             hhhhhHHHHHHHHhcCccCCCcC
Confidence            34688999999999999999999

>KOG1994|consensus

Probab=95.32  E-value=0.0068  Score=46.89  Aligned_cols=46  Identities=22%  Similarity=0.470  Sum_probs=42.1

Q ss_pred             CcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeecCC
Q psy9365          40 GGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEE   85 (98)
Q Consensus        40 ~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~~~   85 (98)
                      ..++++||.-|||+++.-||.+..-+.+|+++-.+..+.||+++..
T Consensus        38 ~r~e~k~~~n~~~~e~r~l~~~e~~~ee~~~~la~~~~~~i~~e~~   83 (268)
T KOG1994|consen   38 MRREYKMMENMGYKEGRTLGSNESALEEPIKVLANTKRRGIRAEKP   83 (268)
T ss_pred             hhhHHHHHHhcCCCCCCccchhhhhhcchHHHhhhhccccccccCc
Confidence            4578899999999999999999999999999999999999988754

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00