Psyllid ID: psy9394

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI
Secondary Structure (PSIPRED)
cEEEEEEccccccHHHEEEcccccEEHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccEEEEEEEcccccEEEEEccccEEEEcccccccccHHHHHHHHHccccccccHHHHHHHHccccccEEcccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccHHcHHHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHHHHccccHHHccEEEEcccccHHHHHHHHHHHHHHHHHHccccEEEEcccHHHcccHHcccccccccEEEEEEEccccEEEEEccccEEEEEcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccccccccccccEcccHHHHHHHHHHHHccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHcccEEEcccccHcccHHHHHHHHHHHHHHccccccccccEEEcccccHHcc
Coil and Loop (DISEMBL)
MIILGIesscddsglaLYDTHIKNLRSHVicsqnlvhkeyggvvpelaARTHIQTIIPLLSKLLknsnlelkkidiiaytrgpglpgsllVGSSIACSIalsinkpviginhleghllspflsnnsltfpFIALLVSGGHTQLIKVNSIGNYFllgetlddaagdTFDKIAKMLdlgypggpeislisefgdpniykfprpmlytnnfnfsfSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYnytvfypkkefctdngAMIAFAGAMRiennyksesnyefnikpqwkinki
Flexible Loop (DISEMBL)
miilgiesscddsgLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVvvggvgankqlRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNyksesnyefnikpqwkinki
Low Complexity Region (SEG)
MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPllskllknsnlelkkIDIIAYTRgpglpgsllvgssIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI
Disordered region (IsUnstruct)
**ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKP*******
Disordered Region (DISOPRED)
MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKIN**
Disordered Region (DISEMBL)
MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI
Disordered Region (DISPRO)
MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKIN**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	339	2.2.26 [Sep-21-2011]
A4G2A7	342	Probable tRNA threonylcar	yes	N/A	0.997	0.988	0.602	1e-125
Q1LK37	346	Probable tRNA threonylcar	yes	N/A	0.994	0.973	0.552	1e-114
Q8XX97	347	Probable tRNA threonylcar	yes	N/A	0.997	0.974	0.530	1e-114
Q474C0	344	Probable tRNA threonylcar	yes	N/A	0.994	0.979	0.552	1e-113
B2U928	347	Probable tRNA threonylcar	yes	N/A	0.997	0.974	0.530	1e-113
B3R5H2	344	Probable tRNA threonylcar	yes	N/A	0.994	0.979	0.541	1e-113
Q0K862	344	Probable tRNA threonylcar	yes	N/A	0.994	0.979	0.544	1e-113
B2JP66	341	Probable tRNA threonylcar	yes	N/A	0.997	0.991	0.55	1e-112
Q13RW9	342	Probable tRNA threonylcar	yes	N/A	0.997	0.988	0.548	1e-111
Q1GYU4	339	Probable tRNA threonylcar	yes	N/A	0.988	0.988	0.552	1e-110

>sp|A4G2A7|GCP_HERAR Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Herminiimonas arsenicoxydans GN=gcp PE=3 SV=1

 Score =  448 bits (1152), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 205/340 (60%), Positives = 271/340 (79%), Gaps = 2/340 (0%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           M++LGIESSCD++GLALYDT  + L +H + SQ  +H+EYGGVVPELA+R HI+  IPLL
Sbjct: 1   MLVLGIESSCDETGLALYDTQ-RGLLAHALYSQVKMHEEYGGVVPELASRDHIRRAIPLL 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            ++   S +    ID IAYT+GPGL G+LLVG+S+AC + L+++KPV+GI+HLEGHLLSP
Sbjct: 60  EQVFSESGVAHGAIDAIAYTQGPGLAGALLVGASVACGLGLALDKPVLGIHHLEGHLLSP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L++    FPFIALLVSGGHTQL++V+ IG Y +LGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 120 LLASEPPEFPFIALLVSGGHTQLMRVDGIGQYTMLGETLDDAAGEAFDKSAKLLGLGYPG 179

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
           GP IS ++EFGDP  YK PRPML++ N +FSFSGLKT+VL V+KN   +  +++KANIAR
Sbjct: 180 GPAISRMAEFGDPTAYKLPRPMLHSKNLDFSFSGLKTAVLTVVKNQTTNICEQDKANIAR 239

Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
            F+DAI++VLT KC+ ALK+TG+ +LV+ GGVGAN+QLR+ LN    + ++ VFYP+ EF
Sbjct: 240 AFVDAIVEVLTAKCVTALKHTGLKRLVIAGGVGANQQLRESLNAAAAKKHFKVFYPELEF 299

Query: 301 CTDNGAMIAFAGAMRIE-NNYKSESNYEFNIKPQWKINKI 339
           CTDNGAMIAFAGAMR++ N   ++ +Y FN+KP+W ++ I
Sbjct: 300 CTDNGAMIAFAGAMRLQINPDAAKKDYAFNVKPRWPLDSI 339

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
Herminiimonas arsenicoxydans (taxid: 204773)

>sp|Q1LK37|GCP_RALME Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=gcp PE=3 SV=2

 Score =  410 bits (1055), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 188/340 (55%), Positives = 260/340 (76%), Gaps = 3/340 (0%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           M++LGIESSCD++GLALYDT    L +H + SQ  +H+EYGGVVPELA+R HI+ ++PLL
Sbjct: 1   MLVLGIESSCDETGLALYDTE-AGLLAHALHSQIAMHREYGGVVPELASRDHIRRVLPLL 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            ++L ++      ID IAYT+GPGL G+LLVG+S+A ++  ++  P+IG++HLEGHLLSP
Sbjct: 60  QQVLDDAGRTRADIDAIAYTQGPGLAGALLVGASVANALGFALGVPMIGVHHLEGHLLSP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L++    FPF+ALLVSGGHTQL++V  IG+Y LLGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 120 LLTSAPPPFPFVALLVSGGHTQLMEVKGIGDYKLLGETLDDAAGEAFDKTAKLLGLGYPG 179

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
           GPE+S ++EFG+P  ++ PRPML++ N +FSF+GLKT+VL   + +  ++ ++++AN+AR
Sbjct: 180 GPEVSRLAEFGNPGAFELPRPMLHSGNLDFSFAGLKTAVLTQTRKLS-NACEQDRANLAR 238

Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
            F+DAI+DVL  K  AALK TG  +LVV GGVGAN+QLR++LN + K+    VFYP   F
Sbjct: 239 AFVDAIVDVLAAKSFAALKQTGDKRLVVAGGVGANRQLRERLNEMGKRRKVEVFYPDLAF 298

Query: 301 CTDNGAMIAFAGAMRIENNYK-SESNYEFNIKPQWKINKI 339
           CTDNGAMIAFAGAMR++   + +   Y++ + P+W +  I
Sbjct: 299 CTDNGAMIAFAGAMRLKAAPELARHGYDYGVTPRWDLADI 338

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.

Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) (taxid: 266264)

>sp|Q8XX97|GCP_RALSO Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Ralstonia solanacearum (strain GMI1000) GN=gcp PE=3 SV=1

 Score =  410 bits (1054), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 182/343 (53%), Positives = 261/343 (76%), Gaps = 5/343 (1%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           M++LGIESSCD++G+ALYDT    LR+H + SQ  +H++YGGVVPELA+R HI+ +IPLL
Sbjct: 1   MLVLGIESSCDETGVALYDTD-AGLRAHALYSQIAMHRDYGGVVPELASRDHIRRVIPLL 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
             +L  + +    ID IAYT+GPGL G+LLVG+S+A ++  ++ KP++G++HLEGHLLSP
Sbjct: 60  EDVLAEAGVGRADIDAIAYTKGPGLAGALLVGASVANALGFALGKPLVGVHHLEGHLLSP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L  +   FPF+ALLVSGGHTQL++V+++G Y LLGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 120 LLEADRPAFPFLALLVSGGHTQLMRVDAVGQYTLLGETLDDAAGEAFDKTAKLLGLGYPG 179

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLD---SLKKEKAN 237
           GP +S ++EFG+P  ++ PRPML++ NF+FSF+GLKT+VL  ++ + LD   + ++ +A+
Sbjct: 180 GPAVSRLAEFGNPGAFELPRPMLHSGNFDFSFAGLKTAVLTQVRKLNLDGGEACEQPRAD 239

Query: 238 IARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPK 297
           +AR F+DAI+DVL  K + A +  G+ ++VV GGVGAN+QLR++LN    +    V+YP 
Sbjct: 240 LARAFVDAIVDVLVAKTLRAAREHGLKRIVVAGGVGANRQLRERLNAEGGKRGLRVYYPD 299

Query: 298 KEFCTDNGAMIAFAGAMRIENN-YKSESNYEFNIKPQWKINKI 339
            +FCTDNGAMIAFAGAMR++ +  + +S Y + + P+W +  I
Sbjct: 300 LQFCTDNGAMIAFAGAMRLQADPGQVQSGYGYGVTPRWDLEDI 342

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|Q474C0|GCP_CUPPJ Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=gcp PE=3 SV=1

 Score =  408 bits (1049), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 188/340 (55%), Positives = 256/340 (75%), Gaps = 3/340 (0%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           M++LGIESSCD++GLALYDT    L SH + SQ  +H++YGGVVPELA+R HI+ ++PLL
Sbjct: 1   MLVLGIESSCDETGLALYDTE-AGLLSHALHSQIAMHRDYGGVVPELASRDHIRRVLPLL 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            ++L  +      ID IA+T+GPGL G+LLVG+S+A ++  ++N P++G++HLEGHLLSP
Sbjct: 60  QQVLDEAGRSRADIDAIAFTQGPGLAGALLVGASVANALGFALNVPMVGVHHLEGHLLSP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L+     FPFIALLVSGGHTQL++V  IG+Y LLGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 120 LLTREPPPFPFIALLVSGGHTQLMEVKGIGDYTLLGETLDDAAGEAFDKTAKLLGLGYPG 179

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
           GPE+S ++EFG P  +  PRPML++ N +FSF+GLKT+VL   + +  ++ ++++AN+AR
Sbjct: 180 GPEVSRLAEFGTPGAFDLPRPMLHSGNLDFSFAGLKTAVLTQTRKLA-NTCEQDRANLAR 238

Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
            F+DAI+DVL  K  AALK TG  +LVV GGVGAN+QLR++LN L KQ    V+YP   F
Sbjct: 239 AFVDAIVDVLAAKSFAALKQTGHKRLVVAGGVGANRQLRERLNQLGKQRKIDVYYPDLAF 298

Query: 301 CTDNGAMIAFAGAMRIENNYK-SESNYEFNIKPQWKINKI 339
           CTDNGAMIA AGAMR++     ++ +Y + + P+W +  I
Sbjct: 299 CTDNGAMIALAGAMRLQAAPDLAQHSYGYGVTPRWDLADI 338

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.

Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198)

>sp|B2U928|GCP_RALPJ Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Ralstonia pickettii (strain 12J) GN=gcp PE=3 SV=1

 Score =  408 bits (1049), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 182/343 (53%), Positives = 260/343 (75%), Gaps = 5/343 (1%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           M++LGIESSCD++G+ALYDTH   LR+H + SQ  +H+EYGGVVPELA+R HI+ +IPLL
Sbjct: 1   MLVLGIESSCDETGVALYDTH-SGLRAHALYSQIAMHREYGGVVPELASRDHIRRVIPLL 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            ++L  +      ID IAYT+GPGL G+LLVG+S+A ++A ++ KP++ ++HLEGHLLSP
Sbjct: 60  EEVLGKAGATRADIDAIAYTKGPGLAGALLVGASVANALAFALGKPLVAVHHLEGHLLSP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L  +   FPF+ALLVSGGHTQL++V+++G Y LLGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 120 LLEADRPEFPFLALLVSGGHTQLMRVDAVGQYTLLGETLDDAAGEAFDKTAKLLGLGYPG 179

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKL---DSLKKEKAN 237
           GP +S ++EFG+P ++  PRPML++ NF+FSF+GLKT+VL  ++ + L   ++  + +A+
Sbjct: 180 GPAVSRLAEFGNPGVFDLPRPMLHSGNFDFSFAGLKTAVLTQVRKLNLTDSETCYQPRAD 239

Query: 238 IARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPK 297
           +AR F+DAI++VL  K + A +  G+ ++VV GGVGAN+QLR+ LN   K+    V+YP 
Sbjct: 240 LARAFVDAIVEVLVKKTLRAAREHGLKRIVVAGGVGANRQLREGLNAEGKKRGLRVYYPD 299

Query: 298 KEFCTDNGAMIAFAGAMRIENN-YKSESNYEFNIKPQWKINKI 339
            +FCTDNGAMIAFAGAMR++ +  + +  Y + + P+W +  I
Sbjct: 300 LQFCTDNGAMIAFAGAMRLQADPAQVQDGYGYGVTPRWDLEDI 342

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.

Ralstonia pickettii (strain 12J) (taxid: 402626)

>sp|B3R5H2|GCP_CUPTR Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=gcp PE=3 SV=1

 Score =  408 bits (1048), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 184/340 (54%), Positives = 260/340 (76%), Gaps = 3/340 (0%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           M++LGIESSCD++GLALYDT    L +H + SQ  +H++YGGVVPELA+R HI+ ++PLL
Sbjct: 1   MLVLGIESSCDETGLALYDTG-AGLLAHALHSQIAMHRDYGGVVPELASRDHIRRVLPLL 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            ++L ++    + ID IA+T+GPGL G+LLVG+S+A ++  ++N P++G++HLEGHLLSP
Sbjct: 60  EQVLADAGRTRQDIDAIAFTQGPGLAGALLVGASVANALGFALNVPMVGVHHLEGHLLSP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L+     FPF+ALLVSGGHTQL++V  IG+Y LLGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 120 LLTREPPPFPFVALLVSGGHTQLMEVRGIGDYALLGETLDDAAGEAFDKTAKLLGLGYPG 179

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
           GPE+S ++EFG P  ++ PRPML++ N +FSF+GLKT+VL   + +  ++ ++++AN+AR
Sbjct: 180 GPEVSRLAEFGVPGAFELPRPMLHSGNLDFSFAGLKTAVLTQTRKLA-NTCEQDRANLAR 238

Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
            F+DAI+DVL  K +AAL+ TG  +LVV GGVGAN+QLR++L+ L +Q    V+YP   F
Sbjct: 239 AFVDAIVDVLVAKSMAALRQTGHKRLVVAGGVGANRQLRERLDQLGRQRKLDVYYPDLAF 298

Query: 301 CTDNGAMIAFAGAMRIENNYK-SESNYEFNIKPQWKINKI 339
           CTDNGAMIAFAGAMR++   + +   Y + + P+W +  I
Sbjct: 299 CTDNGAMIAFAGAMRLQAAPELARREYGYGVTPRWDLADI 338

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.

Cupriavidus taiwanensis (strain R1 / LMG 19424) (taxid: 164546)

>sp|Q0K862|GCP_CUPNH Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=gcp PE=3 SV=1

 Score =  407 bits (1047), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 185/340 (54%), Positives = 259/340 (76%), Gaps = 3/340 (0%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           M++LGIESSCD++GLALYDT    L +H + SQ  +H++YGGVVPELA+R HI+ ++PLL
Sbjct: 1   MLVLGIESSCDETGLALYDTG-AGLLAHALHSQIAMHRDYGGVVPELASRDHIRRVLPLL 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            ++L ++    + ID IA+T+GPGL G+LLVG+S+A ++  ++N P++G++HLEGHLLSP
Sbjct: 60  EQVLADAGRTRQDIDAIAFTQGPGLAGALLVGASVANALGFALNVPMVGVHHLEGHLLSP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L+     FPF+ALLVSGGHTQL++V  IG+Y LLGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 120 LLTREPPPFPFVALLVSGGHTQLMEVRGIGDYTLLGETLDDAAGEAFDKTAKLLGLGYPG 179

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
           GPE+S ++EFG P  +  PRPML++ N +FSF+GLKT+VL   + +  ++ ++++AN+AR
Sbjct: 180 GPEVSRLAEFGIPGAFALPRPMLHSGNLDFSFAGLKTAVLTQTRKLA-NTCEQDRANLAR 238

Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
            F+DAI+DVL  K +AALK TG  +LVV GGVGAN+QLR++L+ + KQ    V+YP   F
Sbjct: 239 AFVDAIVDVLAAKSMAALKQTGHKRLVVAGGVGANRQLRERLDQMGKQRKIDVYYPDLAF 298

Query: 301 CTDNGAMIAFAGAMRIENNYK-SESNYEFNIKPQWKINKI 339
           CTDNGAMIAFAGAMR++   + +   Y + + P+W +  I
Sbjct: 299 CTDNGAMIAFAGAMRLQAAPELARHEYGYGVTPRWDLADI 338

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.

Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)

>sp|B2JP66|GCP_BURP8 Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=gcp PE=3 SV=1

 Score =  404 bits (1039), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/340 (55%), Positives = 253/340 (74%), Gaps = 2/340 (0%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           M++LGIESSCD++GLALYDT  + L +H + SQ  +H+EYGGVVPELA+R HI+  +PLL
Sbjct: 1   MLVLGIESSCDETGLALYDTE-RGLLAHALHSQIAMHREYGGVVPELASRDHIRRALPLL 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            ++L+ S      ID IAYT+GPGL G+LLVG+SIA S+A++ NKP IGI+HLEGHLLSP
Sbjct: 60  EEVLERSGAARGDIDAIAYTQGPGLAGALLVGASIANSLAMAWNKPTIGIHHLEGHLLSP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L +    FPF+ALLVSGGHTQL++V  +G Y  LGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 120 LLVDEPPPFPFVALLVSGGHTQLMRVTDVGVYETLGETLDDAAGEAFDKTAKLLGLGYPG 179

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
           GPE+S ++EFG P     PRPML++ + +FSFSGLKT+VL  +K +  +  ++ KA++AR
Sbjct: 180 GPEVSRLAEFGTPGAVVLPRPMLHSGDLDFSFSGLKTAVLTHVKKLGGNVCEQAKADLAR 239

Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
           GF+DA ++VL  K +AALK T + +LVV GGVGAN+QLR+ L+   ++  + V YP    
Sbjct: 240 GFVDAAVEVLAVKSLAALKKTKLKRLVVAGGVGANRQLREALSSAAQKRGFAVHYPDLSL 299

Query: 301 CTDNGAMIAFAGAMRIEN-NYKSESNYEFNIKPQWKINKI 339
           CTDNGAMIA AGA+R++    ++  +Y F +KP+W +  +
Sbjct: 300 CTDNGAMIALAGALRMQRWPAQATDDYAFTVKPRWDLGSL 339

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.

Burkholderia phymatum (strain DSM 17167 / STM815) (taxid: 391038)

>sp|Q13RW9|GCP_BURXL Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Burkholderia xenovorans (strain LB400) GN=gcp PE=3 SV=1

 Score =  402 bits (1034), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/341 (54%), Positives = 256/341 (75%), Gaps = 3/341 (0%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           M++LGIESSCD++GLALYDT  + L +H + SQ  +H+EYGGVVPELA+R HI+  +PLL
Sbjct: 1   MLVLGIESSCDETGLALYDTE-RGLLAHALHSQIAMHREYGGVVPELASRDHIRRALPLL 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            ++++ +      ID IAYT+GPGL G+LLVG+S+A ++A++ +KP IGI+HLEGHLLSP
Sbjct: 60  EEVMERAGTAAGDIDAIAYTQGPGLAGALLVGASVANALAMAWDKPTIGIHHLEGHLLSP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L +    FPF+ALLVSGGHTQL++V  +G Y  LGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 120 LLVDEPPPFPFVALLVSGGHTQLMRVTDVGVYETLGETLDDAAGEAFDKTAKLLGLGYPG 179

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSL-KKEKANIA 239
           GPE+S ++EFG P     PRPML++ + +FSFSGLKT+VL   K +   ++ ++ KA++A
Sbjct: 180 GPEVSRMAEFGTPGAVVLPRPMLHSGDLDFSFSGLKTAVLTHAKKLGGANICEQAKADLA 239

Query: 240 RGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKE 299
           RGF+DA ++VL  K +AALK TG+N+LVV GGVGAN+QLR+ L+   K+ N+ V YP   
Sbjct: 240 RGFVDAAVEVLAAKSLAALKKTGLNRLVVAGGVGANRQLREALSAAAKKRNFYVHYPDLS 299

Query: 300 FCTDNGAMIAFAGAMRIEN-NYKSESNYEFNIKPQWKINKI 339
            CTDNGAMIA AGA+R++    +S  +Y F +KP+W +  +
Sbjct: 300 LCTDNGAMIALAGALRLQRWPDQSGKDYAFTVKPRWDLTSL 340

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.

Burkholderia xenovorans (strain LB400) (taxid: 266265)

>sp|Q1GYU4|GCP_METFK Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=gcp PE=3 SV=1

 Score =  397 bits (1019), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/340 (55%), Positives = 258/340 (75%), Gaps = 5/340 (1%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           M+ILGIESSCD++GLALYDT  + L +H + SQ  +H  YGGVVPELA+R HI+  +PL 
Sbjct: 1   MLILGIESSCDETGLALYDTE-RGLLAHALHSQIDMHAAYGGVVPELASRDHIRRTLPLT 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
             +L+ +   L  +D IAYT+GPGL G+LLVG+SIA S+A S++ P IG++HLEGHLL+P
Sbjct: 60  QHVLEQAGKSLADLDGIAYTQGPGLSGALLVGTSIAESLAFSLDLPTIGVHHLEGHLLAP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L  +   FPF+ALLVSGGHTQL++V++IG+Y LLG+TLDDAAG+ FDK AK+L L YPG
Sbjct: 120 LLEPDPPAFPFVALLVSGGHTQLMRVSAIGDYELLGDTLDDAAGEAFDKTAKLLGLSYPG 179

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKK-EKANIA 239
           GP +S ++  G P   + PRPML + + NFSFSGLKT+VL ++ N   D+L +  +ANIA
Sbjct: 180 GPAVSRLANQGQPGACQLPRPMLNSGDLNFSFSGLKTAVLTLV-NQYGDALDETARANIA 238

Query: 240 RGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKE 299
             F +A+ +VLT KC+AAL+NTG+N+L+V GGVGAN +LR++LN+  K+  Y V YP+ E
Sbjct: 239 YEFQEAVTEVLTKKCMAALRNTGLNQLIVSGGVGANARLRERLNMAAKRRQYQVHYPRLE 298

Query: 300 FCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
           FCTDNGAMIAFAGAMR++  +  + N+ F ++P+W + ++
Sbjct: 299 FCTDNGAMIAFAGAMRMQ--HAKQGNHSFTVRPRWDLAEL 336

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.

Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) (taxid: 265072)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
399017698	343	putative glycoprotease GCP [Herbaspirill	0.997	0.985	0.605	1e-125
427400725	346	glycoprotease/Kae1 family metallohydrola	0.997	0.976	0.601	1e-125
395763832	346	UGMP family protein [Janthinobacterium l	0.997	0.976	0.613	1e-124
134093698	342	DNA-binding/iron metalloprotein/AP endon	0.997	0.988	0.602	1e-123
152981246	352	DNA-binding/iron metalloprotein/AP endon	0.997	0.960	0.597	1e-123
445499122	346	O-sialoglycoprotein endopeptidase Gcp [J	0.997	0.976	0.610	1e-123
340786225	353	endopeptidase [Collimonas fungivorans Te	0.997	0.957	0.576	1e-123
329905902	344	essential endopeptidase [Oxalobacteracea	0.997	0.982	0.594	1e-121
398836349	348	putative glycoprotease GCP [Herbaspirill	0.997	0.971	0.577	1e-120
300310186	354	O-sialoglycoprotein endopeptidase [Herba	0.997	0.954	0.588	1e-117

>gi|399017698|ref|ZP_10719887.1| putative glycoprotease GCP [Herbaspirillum sp. CF444] gi|398102465|gb|EJL92645.1| putative glycoprotease GCP [Herbaspirillum sp. CF444]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 206/340 (60%), Positives = 274/340 (80%), Gaps = 2/340 (0%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           MI+LG+ESSCD++GLALYDT  K L +H + SQ  +H+EYGGVVPELA+R H++  IPLL
Sbjct: 1   MIVLGVESSCDETGLALYDTQ-KGLLAHALHSQIAMHEEYGGVVPELASRDHVRRAIPLL 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            ++ + S +    ID IAYT+GPGL G+LLVG+S+AC +ALS++KPV+G++HLEGHLLSP
Sbjct: 60  RQVFEKSGIARNDIDAIAYTQGPGLAGALLVGASVACGLALSLDKPVVGVHHLEGHLLSP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            LS+N   FPF+ALLVSGGHTQL++V+ +G Y LLGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 120 LLSSNPPQFPFVALLVSGGHTQLMRVDGVGRYELLGETLDDAAGEAFDKSAKLLGLGYPG 179

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
           GP IS ++EFGDP  Y+ PRPML++ NF+FSFSGLKT+VL V+KN   +  +++KANIAR
Sbjct: 180 GPAISRLAEFGDPGAYQLPRPMLHSKNFDFSFSGLKTAVLTVVKNQTTNICEQDKANIAR 239

Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
            F+DAI+DVL  KC+ ALK+TG+ +LV+ GGVGANKQLR+ LN    +  Y VFYP+ EF
Sbjct: 240 AFVDAIVDVLVAKCMNALKHTGMKRLVIAGGVGANKQLREALNAAAAKRRYQVFYPELEF 299

Query: 301 CTDNGAMIAFAGAMRI-ENNYKSESNYEFNIKPQWKINKI 339
           CTDNGAMIAFAGAMR+ E+   ++ +Y F+++P+W ++++
Sbjct: 300 CTDNGAMIAFAGAMRLQEHPEAAKRDYAFSVRPRWPLDEL 339

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|427400725|ref|ZP_18891963.1| glycoprotease/Kae1 family metallohydrolase [Massilia timonae CCUG 45783] gi|425720238|gb|EKU83161.1| glycoprotease/Kae1 family metallohydrolase [Massilia timonae CCUG 45783]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 207/344 (60%), Positives = 277/344 (80%), Gaps = 6/344 (1%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           MI+LG+ESSCD++G ALYDT  + L SH + SQ  +H+EYGGVVPELA+R HI+  IPLL
Sbjct: 1   MIVLGVESSCDETGFALYDTE-RGLLSHALHSQVAMHEEYGGVVPELASRDHIRRAIPLL 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            ++LK ++L    ID IAYT+GPGL G+LLVGSS+ACS+AL+++KPV+G++HLEGHLLSP
Sbjct: 60  DEVLKRADLPASNIDAIAYTQGPGLAGALLVGSSVACSLALALDKPVLGVHHLEGHLLSP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L++    FPF+ALLVSGGHTQL++V+ +G+Y LLGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 120 LLASERPEFPFLALLVSGGHTQLMRVDGVGSYTLLGETLDDAAGEAFDKSAKLLGLGYPG 179

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKN----IKLDSLKKEKA 236
           GP IS ++EFGDP  Y  PRPML++ +FNFSFSGLKT+VL V+KN    +  +  +++KA
Sbjct: 180 GPAISRLAEFGDPTAYTLPRPMLHSKDFNFSFSGLKTAVLTVVKNHEEKVVANICEQDKA 239

Query: 237 NIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYP 296
           NIARGF+DAI+DVLT KC+ A+K+TG+ +LV+ GGVGANKQLR+ LN    +  + V+YP
Sbjct: 240 NIARGFVDAIVDVLTAKCVNAMKHTGLKRLVIAGGVGANKQLRESLNAAAARRKFKVYYP 299

Query: 297 KKEFCTDNGAMIAFAGAMRIENNYK-SESNYEFNIKPQWKINKI 339
           + EFCTDNGAMIAFAGAMR+E N   ++ +Y F ++P+W ++++
Sbjct: 300 ELEFCTDNGAMIAFAGAMRLERNPALAQRDYAFTVRPRWPLDEL 343

Source: Massilia timonae CCUG 45783

Species: Massilia timonae

Genus: Massilia

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|395763832|ref|ZP_10444501.1| UGMP family protein [Janthinobacterium lividum PAMC 25724]

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/344 (61%), Positives = 274/344 (79%), Gaps = 6/344 (1%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           MI+LG+ESSCD++GLALYDT  + L SH + SQ  +H++YGGVVPELA+R HI+  IPLL
Sbjct: 1   MIVLGVESSCDETGLALYDTQ-RGLLSHALYSQVAMHEQYGGVVPELASRDHIRRAIPLL 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            + L  + + L +ID IAYT+GPGL G+LLVGSS+ACS+ L+INKPV+GI+HLEGHLLSP
Sbjct: 60  DETLAKAGISLAEIDAIAYTQGPGLAGALLVGSSVACSLGLAINKPVLGIHHLEGHLLSP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L++    FPFIALLVSGGHTQL++V+ +G Y +LGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 120 LLASEPPEFPFIALLVSGGHTQLMRVDGVGQYTMLGETLDDAAGEAFDKSAKLLGLGYPG 179

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKN----IKLDSLKKEKA 236
           GP IS ++E GDP  YK PRPML++ +FNFSFSGLKT+VL V+KN    I  +  +++KA
Sbjct: 180 GPAISRLAELGDPLAYKLPRPMLHSKDFNFSFSGLKTAVLTVVKNHEEKIIANICEQDKA 239

Query: 237 NIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYP 296
           NIARGF+DAI+DVLT KC+AALK+TG+ +LV+ GGVGAN QLR  LN    +  + V+YP
Sbjct: 240 NIARGFVDAIVDVLTAKCVAALKHTGLKRLVIAGGVGANAQLRASLNAAAAKKRFKVYYP 299

Query: 297 KKEFCTDNGAMIAFAGAMRIE-NNYKSESNYEFNIKPQWKINKI 339
           + EFCTDNGAMIAFAGAMR++ N   ++ +Y FN++P+W ++ I
Sbjct: 300 ELEFCTDNGAMIAFAGAMRLQINPQAAKYDYSFNVRPRWPLDDI 343

Source: Janthinobacterium lividum PAMC 25724

Species: Janthinobacterium lividum

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|134093698|ref|YP_001098773.1| DNA-binding/iron metalloprotein/AP endonuclease [Herminiimonas arsenicoxydans] gi|158513563|sp|A4G2A7.1|GCP_HERAR RecName: Full=Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein gi|133737601|emb|CAL60644.1| putative O-sialoglycoprotein endopeptidase [Herminiimonas arsenicoxydans]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 205/340 (60%), Positives = 271/340 (79%), Gaps = 2/340 (0%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           M++LGIESSCD++GLALYDT  + L +H + SQ  +H+EYGGVVPELA+R HI+  IPLL
Sbjct: 1   MLVLGIESSCDETGLALYDTQ-RGLLAHALYSQVKMHEEYGGVVPELASRDHIRRAIPLL 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            ++   S +    ID IAYT+GPGL G+LLVG+S+AC + L+++KPV+GI+HLEGHLLSP
Sbjct: 60  EQVFSESGVAHGAIDAIAYTQGPGLAGALLVGASVACGLGLALDKPVLGIHHLEGHLLSP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L++    FPFIALLVSGGHTQL++V+ IG Y +LGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 120 LLASEPPEFPFIALLVSGGHTQLMRVDGIGQYTMLGETLDDAAGEAFDKSAKLLGLGYPG 179

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
           GP IS ++EFGDP  YK PRPML++ N +FSFSGLKT+VL V+KN   +  +++KANIAR
Sbjct: 180 GPAISRMAEFGDPTAYKLPRPMLHSKNLDFSFSGLKTAVLTVVKNQTTNICEQDKANIAR 239

Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
            F+DAI++VLT KC+ ALK+TG+ +LV+ GGVGAN+QLR+ LN    + ++ VFYP+ EF
Sbjct: 240 AFVDAIVEVLTAKCVTALKHTGLKRLVIAGGVGANQQLRESLNAAAAKKHFKVFYPELEF 299

Query: 301 CTDNGAMIAFAGAMRIE-NNYKSESNYEFNIKPQWKINKI 339
           CTDNGAMIAFAGAMR++ N   ++ +Y FN+KP+W ++ I
Sbjct: 300 CTDNGAMIAFAGAMRLQINPDAAKKDYAFNVKPRWPLDSI 339

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|152981246|ref|YP_001352168.1| DNA-binding/iron metalloprotein/AP endonuclease [Janthinobacterium sp. Marseille] gi|151281323|gb|ABR89733.1| O-sialoglycoprotein endopeptidase [Janthinobacterium sp. Marseille]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 203/340 (59%), Positives = 271/340 (79%), Gaps = 2/340 (0%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           M++LGIESSCD++GLALYDT  + L +H + SQ  +H+EYGGVVPELA+R HI+  +PLL
Sbjct: 11  MLVLGIESSCDETGLALYDTQ-RGLLAHALYSQVKMHEEYGGVVPELASRDHIRRALPLL 69

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            ++   S ++   ID IAYT+GPGL G+LLVG+S+AC + L+++KPV+GI+HLEGHLLSP
Sbjct: 70  DQVFSESGIQHDAIDAIAYTQGPGLAGALLVGASVACGLGLALDKPVLGIHHLEGHLLSP 129

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L++    FPFIALLVSGGHTQL++V+ +G Y +LGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 130 LLASEPPEFPFIALLVSGGHTQLMRVDGVGQYTMLGETLDDAAGEAFDKSAKLLGLGYPG 189

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
           GP IS ++EFGDP  YK PRPML++ N +FSFSGLKT+VL V+KN   +  +++KANIAR
Sbjct: 190 GPAISRMAEFGDPTAYKLPRPMLHSKNLDFSFSGLKTAVLTVVKNQTTNICEQDKANIAR 249

Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
            F+DAI++VLT KC+ ALK+TG+ +LV+ GGVGAN+QLR  LN    + ++ VFYP+ EF
Sbjct: 250 AFVDAIVEVLTAKCVTALKHTGLKRLVIAGGVGANQQLRASLNAAAAKKHFKVFYPELEF 309

Query: 301 CTDNGAMIAFAGAMRIE-NNYKSESNYEFNIKPQWKINKI 339
           CTDNGAMIAFAGAMR++ N   ++ +Y FN+KP+W ++ I
Sbjct: 310 CTDNGAMIAFAGAMRLQLNPAAAKRDYAFNVKPRWPLDSI 349

Source: Janthinobacterium sp. Marseille

Species: Janthinobacterium sp. Marseille

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|445499122|ref|ZP_21465977.1| O-sialoglycoprotein endopeptidase Gcp [Janthinobacterium sp. HH01] gi|444789117|gb|ELX10665.1| O-sialoglycoprotein endopeptidase Gcp [Janthinobacterium sp. HH01]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/344 (61%), Positives = 274/344 (79%), Gaps = 6/344 (1%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           MI+LG+ESSCD++GLALYDT    L SH + SQ  +H+EYGGVVPELA+R HI+  IPLL
Sbjct: 1   MIVLGVESSCDETGLALYDTQ-HGLLSHALYSQVAMHEEYGGVVPELASRDHIRRAIPLL 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
           ++ L+ +   L  ID IAYT+GPGL G+LLVGSS+ACS+ L+++KPV+G++HLEGHLLSP
Sbjct: 60  TQTLEGAGKSLADIDAIAYTQGPGLAGALLVGSSVACSLGLALDKPVLGVHHLEGHLLSP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L++    FPFIALLVSGGHTQL++V+ +G Y LLGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 120 LLASQPPEFPFIALLVSGGHTQLMRVDGVGQYTLLGETLDDAAGEAFDKSAKLLGLGYPG 179

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKN----IKLDSLKKEKA 236
           GP IS ++EFGDP  YK PRPML+T +FNFSFSGLKT+VL V+KN    +  +  +++KA
Sbjct: 180 GPAISRLAEFGDPLAYKLPRPMLHTKDFNFSFSGLKTAVLTVVKNHEEKVIANICEQDKA 239

Query: 237 NIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYP 296
           NIARGF+DAI+DVLT KC++ALK+TG+ +LV+ GGVGAN QLR  LN    +  + V+YP
Sbjct: 240 NIARGFVDAIVDVLTAKCVSALKHTGLKRLVIAGGVGANSQLRASLNAAAAKKKFKVYYP 299

Query: 297 KKEFCTDNGAMIAFAGAMRIE-NNYKSESNYEFNIKPQWKINKI 339
           + EFCTDNGAMIAFAGAMR+  N   ++ +Y FN++P+W +++I
Sbjct: 300 ELEFCTDNGAMIAFAGAMRLMINPDAAKKDYSFNVRPRWPLDEI 343

Source: Janthinobacterium sp. HH01

Species: Janthinobacterium sp. HH01

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|340786225|ref|YP_004751690.1| endopeptidase [Collimonas fungivorans Ter331] gi|340551492|gb|AEK60867.1| Endopeptidase essential in most Bacteria [Collimonas fungivorans Ter331]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 196/340 (57%), Positives = 275/340 (80%), Gaps = 2/340 (0%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           MI+LG+ESSCD++GLALYDT  + L +H + SQ  +H++YGGVVPELA+R HI+  IPLL
Sbjct: 11  MIVLGVESSCDETGLALYDTE-RGLLAHALYSQVAMHEQYGGVVPELASRDHIRRAIPLL 69

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            ++L  S +  + ID IAYT+GPGL G+LLVG+S+AC + L+++KP++G++HLEGHLLSP
Sbjct: 70  QQVLAESGIARQDIDAIAYTQGPGLAGALLVGASVACGLGLALDKPMLGVHHLEGHLLSP 129

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L+++  +FPF+ALLVSGGHTQL++V+ +G Y LLGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 130 LLASDPPSFPFVALLVSGGHTQLMRVDGVGQYSLLGETLDDAAGEAFDKSAKLLGLGYPG 189

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
           GP IS ++EFGDP++Y+ PRPML++ N +FSFSGLKT+VL ++K    +  +++KANIAR
Sbjct: 190 GPAISRLAEFGDPSVYQLPRPMLHSKNLDFSFSGLKTAVLTLVKKHTTNICEQDKANIAR 249

Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
            F+DA+++VL  KC+AALK TG+ +LV+ GGVGAN+QLR  LN   ++  + V+YP+ EF
Sbjct: 250 AFVDALVEVLLAKCLAALKQTGLKRLVIAGGVGANQQLRSALNAAAEKRRFRVYYPELEF 309

Query: 301 CTDNGAMIAFAGAMRIE-NNYKSESNYEFNIKPQWKINKI 339
           CTDNGAMIAFAGAMR++ N   ++ +Y FN++P+W +N++
Sbjct: 310 CTDNGAMIAFAGAMRLQINPQAAQRSYAFNVRPRWPLNEV 349

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|329905902|ref|ZP_08274283.1| essential endopeptidase [Oxalobacteraceae bacterium IMCC9480] gi|327547433|gb|EGF32256.1| essential endopeptidase [Oxalobacteraceae bacterium IMCC9480]

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 202/340 (59%), Positives = 271/340 (79%), Gaps = 2/340 (0%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           MI+LG+ESSCD++GLALYDT+   L SH + SQ  +H++YGGVVPELA+R HI+  IPLL
Sbjct: 1   MIVLGVESSCDETGLALYDTN-AGLLSHALYSQVAMHEQYGGVVPELASRDHIRRAIPLL 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            ++L  + L   +ID IAYT+GPGL G+LLVG+S+AC + L+++KPV+GI+HLEGHLLSP
Sbjct: 60  EQVLHEAALTRDRIDAIAYTQGPGLAGALLVGASVACGLGLALDKPVLGIHHLEGHLLSP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L+++   FPFIALLVSGGHTQL++V+ +G Y LLGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 120 LLASDPPAFPFIALLVSGGHTQLMRVDGVGRYTLLGETLDDAAGEAFDKSAKLLGLGYPG 179

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
           GP IS ++EFGDP  YK PRPML++ +FNFSFSGLKT+VL V+KN   +  +++KANIAR
Sbjct: 180 GPAISRMAEFGDPLAYKLPRPMLHSKDFNFSFSGLKTAVLTVVKNHPGNVCEQDKANIAR 239

Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
           GF+DA++DVL  K ++ALK+TG+N+LVV GGVGAN+QLR  L+    +  + V+YP+ EF
Sbjct: 240 GFVDAMVDVLVAKSLSALKHTGLNRLVVAGGVGANRQLRAALDAAGLKKRFRVYYPELEF 299

Query: 301 CTDNGAMIAFAGAMRIENNYK-SESNYEFNIKPQWKINKI 339
           CTDNGAMIAFAG +R+  +   +  NY FN++P+W + ++
Sbjct: 300 CTDNGAMIAFAGGLRLAQDPTLAVRNYAFNVRPRWPLAEL 339

Source: Oxalobacteraceae bacterium IMCC9480

Species: Oxalobacteraceae bacterium IMCC9480

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|398836349|ref|ZP_10593686.1| putative glycoprotease GCP [Herbaspirillum sp. YR522] gi|398211983|gb|EJM98594.1| putative glycoprotease GCP [Herbaspirillum sp. YR522]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 198/343 (57%), Positives = 267/343 (77%), Gaps = 5/343 (1%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           MI+LG+ESSCD++GLALYDT  + L +H + SQ  +H+EYGGVVPELA+R HI+  IPLL
Sbjct: 1   MIVLGVESSCDETGLALYDTE-RGLLAHALHSQVAMHQEYGGVVPELASRDHIRRAIPLL 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            + L  + +    ID IAYT+GPGL G+LLVG+S+AC +AL+I++PV+GI+HLEGHLLSP
Sbjct: 60  QQTLAEAGIVKTDIDAIAYTQGPGLAGALLVGASVACGLALAIDRPVLGIHHLEGHLLSP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L++    FPF+ALLVSGGHTQL++V+ +G Y LLGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 120 LLASKPPAFPFVALLVSGGHTQLMRVDGVGRYELLGETLDDAAGEAFDKSAKLLGLGYPG 179

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDS---LKKEKAN 237
           GPEIS ++EFGDP  Y  PRPML+  N +FSFSGLKT+VL V++    +     +++KAN
Sbjct: 180 GPEISRMAEFGDPKAYTLPRPMLHAKNLDFSFSGLKTAVLTVVRQQGANGANICEQDKAN 239

Query: 238 IARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPK 297
           IARGF+DAI++VL  KC+AALK TG+ +LV+ GGVGAN+QLR+ L+ +  +  + VFYP+
Sbjct: 240 IARGFVDAIVEVLVAKCMAALKQTGLKRLVIAGGVGANRQLRQALDAMAAKRRHEVFYPE 299

Query: 298 KEFCTDNGAMIAFAGAMRIENNYKSESN-YEFNIKPQWKINKI 339
            +FCTDNGAMIAFAGAMR+     + +  Y F ++P+W ++++
Sbjct: 300 LQFCTDNGAMIAFAGAMRLRLQPDAATREYGFGVRPRWPLDEL 342

Source: Herbaspirillum sp. YR522

Species: Herbaspirillum sp. YR522

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|300310186|ref|YP_003774278.1| O-sialoglycoprotein endopeptidase [Herbaspirillum seropedicae SmR1] gi|300072971|gb|ADJ62370.1| O-sialoglycoprotein endopeptidase protein [Herbaspirillum seropedicae SmR1]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 200/340 (58%), Positives = 267/340 (78%), Gaps = 2/340 (0%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           M++LG+ESSCD++GLALYDT  + L +H + SQ  +H+EYGGVVPELA+R HI+  IPLL
Sbjct: 1   MLVLGVESSCDETGLALYDTE-RGLLAHALHSQIAMHQEYGGVVPELASRDHIRRAIPLL 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            + L ++ ++ + ID IAYT+GPGL G+LLVG+S+AC + L+++KPV+GI+HLEGHLLSP
Sbjct: 60  RQTLADAQVQAQDIDAIAYTQGPGLAGALLVGASVACGLGLALDKPVLGIHHLEGHLLSP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L++    FPFIALLVSGGHTQL++V+ +G Y LLGETLDDAAG+ FDK AK+L LGYPG
Sbjct: 120 LLASKPPRFPFIALLVSGGHTQLMRVDGVGRYELLGETLDDAAGEAFDKSAKLLGLGYPG 179

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
           GP IS ++EFGDPN Y+ PRPML++ N +FSFSGLKT+VL V+K    +  +++KANIAR
Sbjct: 180 GPAISRLAEFGDPNAYQLPRPMLHSKNLDFSFSGLKTAVLTVVKQQSTNICEQDKANIAR 239

Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
           GF+DAI+DVL  KC+ ALK T + +LV+ GGVGAN QLR  LN    +  Y VFYP+ +F
Sbjct: 240 GFVDAIVDVLVAKCMTALKQTNLKRLVIAGGVGANAQLRAALNAAAAKRRYEVFYPELQF 299

Query: 301 CTDNGAMIAFAGAMRI-ENNYKSESNYEFNIKPQWKINKI 339
           CTDNGAMIAFAGAMR+ E    +   Y F+++P+W ++++
Sbjct: 300 CTDNGAMIAFAGAMRLREEPGAARKQYGFSVRPRWPLDEL 339

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
TIGR_CMR|SO_1289	338	SO_1289 "O-sialoglycoprotein e	0.985	0.988	0.454	4.3e-77
UNIPROTKB|Q88A57	341	gcp "Probable tRNA threonylcar	0.991	0.985	0.445	2.7e-75
TIGR_CMR|CBU_1240	339	CBU_1240 "O-sialoglycoprotein	0.979	0.979	0.436	1.5e-74
UNIPROTKB|P05852	337	tsaD "protein involved in thre	0.985	0.991	0.445	5.1e-74
UNIPROTKB|Q4K4W4	341	gcp "Probable tRNA threonylcar	0.991	0.985	0.434	2.8e-73
TIGR_CMR|CPS_4338	349	CPS_4338 "O-sialoglycoprotein	0.994	0.965	0.426	4.6e-73
TIGR_CMR|CHY_0725	333	CHY_0725 "O-sialoglycoprotein	0.902	0.918	0.423	1.2e-56
TIGR_CMR|GSU_1865	340	GSU_1865 "metalloendopeptidase	0.911	0.908	0.397	1.2e-56
UNIPROTKB|Q0C5X3	365	gcp "Probable tRNA threonylcar	0.985	0.915	0.380	4.8e-55
TIGR_CMR|ECH_0644	349	ECH_0644 "putative metalloendo	0.979	0.951	0.376	7e-54

TIGR_CMR|SO_1289 SO_1289 "O-sialoglycoprotein endopeptidase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 154/339 (45%), Positives = 217/339 (64%)

Query:     1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPXX 60
             M +LGIE+SCD++G+A+YD  +  L SH + SQ  +H +YGGVVPELA+R H++ I+P  
Sbjct:     1 MRVLGIETSCDETGIAVYDDKL-GLLSHALYSQVKLHADYGGVVPELASRDHVRKIVPLI 59

Query:    61 XXXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINKPVIGINHLEGHLLSP 120
                          ID IAYT+             +  S+A + NKP IG++H+EGHLL+P
Sbjct:    60 RQALKNANTDIADIDGIAYTKGPGLIGALLVGACVGRSLAFAWNKPAIGVHHMEGHLLAP 119

Query:   121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
              L  ++  FPF+ALLVSGGH+ L+KV+ IG Y +LGE++DDAAG+ FDK AK++ L YPG
Sbjct:   120 MLEEDAPEFPFVALLVSGGHSMLVKVDGIGLYAVLGESVDDAAGEAFDKTAKLMGLDYPG 179

Query:   181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
             GP ++ ++  G+P  Y+FPRPM      +FSFSGLKT   N I     D  ++ +ANIAR
Sbjct:   180 GPRLAKLAAKGEPAGYQFPRPMTDRPGLDFSFSGLKTFTANTIAAEPDD--EQTRANIAR 237

Query:   241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
              F +A++D L  KC  ALK TG N+LV+ GGV AN +LR+ L  +       V+YP+ EF
Sbjct:   238 AFEEAVVDTLAIKCRRALKQTGYNRLVIAGGVSANTRLRETLAEMMTSIGGRVYYPRGEF 297

Query:   301 CTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
             CTDNGAMIAFAG  R++     + +     +P+W ++ +
Sbjct:   298 CTDNGAMIAFAGLQRLKAG--QQEDLAVKGQPRWPLDTL 334

GO:0006508 "proteolysis" evidence=ISS

UNIPROTKB|Q88A57 gcp "Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 152/341 (44%), Positives = 214/341 (62%)

Query:     1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPXX 60
             M++LG+E+SCD++G+ALYD+  + L +  + SQ  +H+ YGGVVPELA+R H++ ++P  
Sbjct:     1 MLVLGLETSCDETGVALYDSE-RGLLADALFSQIDLHRAYGGVVPELASRDHVKRMLPLI 59

Query:    61 XXXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINKPVIGINHLEGHLLSP 120
                          ID IAYT               A ++A + + P +G++H+EGHLL+P
Sbjct:    60 RQTLAEADCVATDIDAIAYTAGPGLVGALLVGASCAQALAFAWDIPALGVHHMEGHLLAP 119

Query:   121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
              L  N   FPF+ALLVSGGHTQL++V+ IG Y LLGETLDDAAG+ FDK AKM+ + YPG
Sbjct:   120 MLEENPPQFPFVALLVSGGHTQLVRVDGIGQYELLGETLDDAAGEAFDKTAKMMGMQYPG 179

Query:   181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKL--DSLKKEKANI 238
             GPEIS  +  G P  + FPRPM       FSFSGLKTS LN  +  +   D  ++ + +I
Sbjct:   180 GPEISKAALQGVPGRFVFPRPMTDRPGLAFSFSGLKTSALNTWQQCQSAGDDSEQTRCDI 239

Query:   239 ARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298
             A  F  A+++ LT KC  ALK TG+  LV+ GGV ANK LR  L  +  +    V+Y + 
Sbjct:   240 ALAFQQAVVETLTIKCKRALKQTGLKSLVIAGGVSANKALRVSLESMLGELRGHVYYARP 299

Query:   299 EFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
             EFCTDNGAMIAFAG  R++   K + +   +++ +W + ++
Sbjct:   300 EFCTDNGAMIAFAGCQRLQAGQKEDLS--ISVQARWPMEQL 338

GO:0004222 "metalloendopeptidase activity" evidence=ISS

TIGR_CMR|CBU_1240 CBU_1240 "O-sialoglycoprotein endopeptidase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 147/337 (43%), Positives = 217/337 (64%)

Query:     3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPXXXX 62
             +LG+E+SCD++ +ALYD   + L +H + SQ  +H EYGGVVPELA+R HI+ I+P    
Sbjct:     4 VLGVETSCDETAVALYDGE-RGLLAHRVYSQIAIHAEYGGVVPELASRDHIRKILPLIKA 62

Query:    63 XXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINKPVIGINHLEGHLLSPFL 122
                        ID IAYT+             +A S+A +   PV+G++H+E HL++  L
Sbjct:    63 ALDDAALSKENIDGIAYTKGPGLIGALMVGASVAKSLAYAWRVPVVGVHHMEAHLMALQL 122

Query:   123 SNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGP 182
               +   +PFIALLVSGGHT L+ V   G Y +LGE++DDAAG+ FDK AK+L L YPGGP
Sbjct:   123 EESRPAYPFIALLVSGGHTMLVHVEQPGRYKILGESVDDAAGEAFDKTAKLLGLPYPGGP 182

Query:   183 EISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGF 242
              ++ ++E G+P  + FPRPM+   + NFSFSGLKT  +N  K  +    ++ +A+IA  F
Sbjct:   183 ALARLAEQGEPKRFIFPRPMVNQPHLNFSFSGLKTHAVNCFK--QYGGEEQTRADIACAF 240

Query:   243 LDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCT 302
              +A++D L  KC+ AL+ TGIN LV+VGGV ANK+LR++L  +  +    ++YP++EFCT
Sbjct:   241 ENAVVDTLIIKCLRALEKTGINTLVLVGGVAANKKLRERLGQVAVKRAAQIYYPRQEFCT 300

Query:   303 DNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
             DNGAM+A+ G +R+    K +      +KP+W + ++
Sbjct:   301 DNGAMVAYTGWLRLNAGEKEDKI--IRVKPRWSMAEL 335

GO:0006508 "proteolysis" evidence=ISS

UNIPROTKB|P05852 tsaD "protein involved in threonylcarbamoyladenosine biosynthesis" [Escherichia coli K-12 (taxid:83333)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 151/339 (44%), Positives = 212/339 (62%)

Query:     1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPXX 60
             M +LGIE+SCD++G+A+YD   K L ++ + SQ  +H +YGGVVPELA+R H++  +P  
Sbjct:     1 MRVLGIETSCDETGIAIYDDE-KGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLI 59

Query:    61 XXXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINKPVIGINHLEGHLLSP 120
                          ID +AYT              +  S+A + + P I ++H+EGHLL+P
Sbjct:    60 QAALKESGLTAKDIDAVAYTAGPGLVGALLVGATVGRSLAFAWDVPAIPVHHMEGHLLAP 119

Query:   121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
              L +N   FPF+ALLVSGGHTQLI V  IG Y LLGE++DDAAG+ FDK AK+L L YPG
Sbjct:   120 MLEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDDAAGEAFDKTAKLLGLDYPG 179

Query:   181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
             GP +S ++  G    + FPRPM      +FSFSGLKT   N I++   D   + +A+IAR
Sbjct:   180 GPLLSKMAAQGTAGRFVFPRPMTDRPGLDFSFSGLKTFAANTIRDNGTDD--QTRADIAR 237

Query:   241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
              F DA++D L  KC  AL  TG  +LV+ GGV AN+ LR KL  + K+    VFY + EF
Sbjct:   238 AFEDAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLRAKLAEMMKKRRGEVFYARPEF 297

Query:   301 CTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
             CTDNGAMIA+AG +R +    + ++   +++P+W + ++
Sbjct:   298 CTDNGAMIAYAGMVRFKAG--ATADLGVSVRPRWPLAEL 334

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0070526 "threonylcarbamoyladenosine biosynthetic process" evidence=IMP;IDA

GO:0001948 "glycoprotein binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IDA

GO:0008233 "peptidase activity" evidence=ISS

UNIPROTKB|Q4K4W4 gcp "Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 148/341 (43%), Positives = 211/341 (61%)

Query:     1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPXX 60
             M++LG+E+SCD++G+ALYD+  + L +  + SQ  +H+ YGGVVPELA+R H++ ++P  
Sbjct:     1 MLVLGLETSCDETGVALYDSE-RGLLADALFSQIDLHRAYGGVVPELASRDHVKRMLPLI 59

Query:    61 XXXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINKPVIGINHLEGHLLSP 120
                          ID IAYT               A ++A +   P +G++H+EGHLL+P
Sbjct:    60 RQVLAEADCVPTEIDAIAYTAGPGLVGALLVGASCAQALAFAWGIPALGVHHMEGHLLAP 119

Query:   121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
              L      FPF+ALLVSGGHTQL++V+ IG Y LLGETLDDAAG+ FDK AKM+ L YPG
Sbjct:   120 MLEEQPPQFPFVALLVSGGHTQLVRVDGIGQYELLGETLDDAAGEAFDKTAKMIGLNYPG 179

Query:   181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKL--DSLKKEKANI 238
             GPEI+ ++  G    + FPRPM      +FSFSGLKT  LN  +      D  ++ + +I
Sbjct:   180 GPEIARLATQGVAGRFVFPRPMTDRPGLDFSFSGLKTFALNTWQQCVSAGDDGEQTRCDI 239

Query:   239 ARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298
             +  F  A+++ LT KC  ALK TG+ +LV+ GGV ANK LR  L  +  +    VFY + 
Sbjct:   240 SLAFQQAVVETLTIKCKRALKQTGLKRLVIAGGVSANKALRASLEKMLAEMKGNVFYARP 299

Query:   299 EFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
             EFCTDNGAMIAFAG  R++     + +   +++ +W + ++
Sbjct:   300 EFCTDNGAMIAFAGCQRLQAG--QQESLAISVQARWPMEQL 338

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

TIGR_CMR|CPS_4338 CPS_4338 "O-sialoglycoprotein endopeptidase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
 Identities = 148/347 (42%), Positives = 217/347 (62%)

Query:     1 MIILGIESSCDDSGLALYDTHI----KNLRSHVICSQNLVHKEYGGVVPELAARTHIQTI 56
             M ILGIE+SCD++G+A+YD  +    + + +H + SQ  VH +YGGVVPELA+R H++  
Sbjct:     1 MRILGIETSCDETGIAIYDDGLGDSPEGILAHRLYSQIAVHADYGGVVPELASRDHVRKT 60

Query:    57 IPXXXXXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINKPVIGINHLEGH 116
             IP               +D +AYT              I  S+A     P + ++H+EGH
Sbjct:    61 IPLIKEVLADANLTPKDLDGVAYTAGPGLVGALLVGCSIGRSLAYGWELPAVPVHHMEGH 120

Query:   117 LLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDL 176
             LL+P L ++   FPF+ALLVSGGHT L++V++IG Y LLGE++DDAAG+ FDK AK+L L
Sbjct:   121 LLAPMLEDDVPEFPFVALLVSGGHTMLVRVDAIGEYKLLGESVDDAAGEAFDKTAKLLGL 180

Query:   177 GYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIK----NIKLDSLK 232
              YPGGP +S ++E G+   +K PRPM      +FSFSGLKT+   +++    N+    LK
Sbjct:   181 DYPGGPALSKMAESGEAGRFKLPRPMTDRPGLDFSFSGLKTAAGTLVRKECLNLSDSDLK 240

Query:   233 KEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYT 292
             +  A+IA  F  A++D L  KC  AL+   +++LV+ GGV AN  LR++L I  K+   +
Sbjct:   241 QTHADIANAFQQAVVDTLAIKCKRALQQEKLSRLVIAGGVSANTALREQLAITTKKLGGS 300

Query:   293 VFYPKKEFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
             VFYP+ EFCTDNGAMIA+AG  R++    ++++  F   P+W ++ +
Sbjct:   301 VFYPRPEFCTDNGAMIAYAGLQRLKAG--TDADLTFKANPRWALDSL 345

GO:0006508 "proteolysis" evidence=ISS

TIGR_CMR|CHY_0725 CHY_0725 "O-sialoglycoprotein endopeptidase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 133/314 (42%), Positives = 187/314 (59%)

Query:     2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPXXX 61
             +ILGIE+SCD++ ++L +   K L S ++ SQ  +H+ YGGVVPE+A+R H++ I P   
Sbjct:     4 VILGIETSCDETAVSLVEDGRKVLIS-LLSSQVDLHRLYGGVVPEIASRRHLELIFPLLD 62

Query:    62 XXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINKPVIGINHLEGHLLSPF 121
                         I  +A T              +A S++ ++N P+IG+NH+EGH+ + F
Sbjct:    63 EAFRKFPREK--IAAVAVTYGPGLVGALLVGLSVAKSLSYALNVPLIGVNHMEGHIFANF 120

Query:   122 LSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGG 181
             L + +  FP + L+VSGGHT LI +   G+Y LLGET+DDAAG+ FDK+ ++L+L YP G
Sbjct:   121 LEDANPVFPALVLVVSGGHTDLIFMRGFGDYELLGETIDDAAGECFDKVGRVLNLPYPAG 180

Query:   182 PEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARG 241
             P I  +S+ G P IYKFP   L    +NFSFSGLKT+V  V +  K    K E  +IA  
Sbjct:   181 PVIDRLSKKGKP-IYKFPVARLKEEGYNFSFSGLKTAV-RVFRE-KNPEAKVE--DIAAS 235

Query:   242 FLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFC 301
             F +A++  L      ALK     KL + GGV AN +LR++   L K YN  V +P  ++C
Sbjct:   236 FQEALVRALVENTEKALKECMPAKLYLAGGVAANSRLREEFLNLGKTYNVPVHFPSLQYC 295

Query:   302 TDNGAMIAFAGAMR 315
             TDN AMIA AG  R
Sbjct:   296 TDNAAMIAAAGYHR 309

GO:0006508 "proteolysis" evidence=ISS

TIGR_CMR|GSU_1865 GSU_1865 "metalloendopeptidase, putative, glycoprotease family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 124/312 (39%), Positives = 179/312 (57%)

Query:     1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPXX 60
             M++L IE+SCD++  AL     +++ S V+ SQ   H  YGGVVPE+A+R H++TI    
Sbjct:     1 MLVLAIETSCDETAAALVRDG-RSILSSVVSSQVKDHAVYGGVVPEIASRKHLETIPAVI 59

Query:    61 XXXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINKPVIGINHLEGHLLSP 120
                          ++ +A T+             +A SIA +   P++G+NH+E HL + 
Sbjct:    60 GEALRLADVTLDHVEGVAVTQGPGLAGALLVGLSVAKSIAFARRLPLVGVNHIEAHLAAI 119

Query:   121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
             FL    + +P++AL+VSGGH+ L +V+ IG    LG+TLDDAAG+ FDK+AK+L L YPG
Sbjct:   120 FLERE-VAYPYLALVVSGGHSHLYRVDGIGRCTTLGQTLDDAAGEAFDKVAKLLGLPYPG 178

Query:   181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
             G EI  ++  GDP+   FPRP+L+  +FNFSFSGLKT+VL+ +K   L    K  A+   
Sbjct:   179 GIEIDRLASAGDPDAIAFPRPLLHDGSFNFSFSGLKTAVLSAVKKQGLPE-GKSLADFCA 237

Query:   241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
              F  A+  VL  K   A +  GI+++VV GGV  N  LR+++          +  P    
Sbjct:   238 SFQKAVCHVLVEKTFRAAEAAGIDRVVVAGGVACNSALRREMAHAAAARGVELMIPSPSL 297

Query:   301 CTDNGAMIAFAG 312
             C DN AMIA  G
Sbjct:   298 CGDNAAMIAVPG 309

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

UNIPROTKB|Q0C5X3 gcp "Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 131/344 (38%), Positives = 179/344 (52%)

Query:     1 MIILGIESSCDDSGLAL--YDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIP 58
             + ILGIE+SCD++  A+  Y+     L S VI +Q   H  Y GVVPE+AAR H +    
Sbjct:     8 LTILGIETSCDETAAAVLRYEDGRATLLSDVIRTQLAEHAPYLGVVPEIAARAHAELADL 67

Query:    59 XXXXXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINKPVIGINHLEGHLL 118
                            +D +A T                 +IA +  KP I +NHLEGH L
Sbjct:    68 TVAAAMNASGLSYAELDGVAATAGPGLIGGVLVGLMTGKAIAQAAGKPFIPVNHLEGHAL 127

Query:   119 SPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGY 178
             SP LS +   FP++ LLVSGGH Q + V  +G+Y  LG T+DDA G+ FDK+AK+L LG+
Sbjct:   128 SPRLSEDC-PFPYLLLLVSGGHCQFLDVRGLGDYRRLGSTIDDAVGEAFDKVAKLLGLGF 186

Query:   179 PGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANI 238
             PGGP +  ++  GDP  + FPRP+L     + SF+GLKT+V     N K ++   EKA+I
Sbjct:   187 PGGPAVEALARNGDPKAHDFPRPLLNRPGLDMSFAGLKTAVARASANAKSEA---EKADI 243

Query:   239 ARGFLDAIIDVLTFKCIAALKN----TGINKLVVVGGVGANKQLRKKLNILKKQYNYTVF 294
                F  AI DVL  K   AL+      G  + VV GGV +NK +R  L          + 
Sbjct:   244 CASFQAAICDVLAEKARRALEGFDAGAGDKRFVVAGGVASNKAIRAALETAATAQGARLI 303

Query:   295 YPKKEFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINK 338
              P    CTDN AMIA AGA  +            + +P+W +++
Sbjct:   304 APPLRHCTDNAAMIALAGAEHLAAGLCETDGLASSARPRWPLDE 347

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

TIGR_CMR|ECH_0644 ECH_0644 "putative metalloendopeptidase, glycoprotease family" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 129/343 (37%), Positives = 185/343 (53%)

Query:     2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPXXX 61
             I+LGIE+SCD++ +A+ +++ K + SH I SQ   H  YGGVVPE+A+R HI  +     
Sbjct:     6 IVLGIETSCDETAVAIVNSN-KEVLSHKILSQQ-EHAAYGGVVPEIASRAHINYLYELVG 63

Query:    62 XXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINKPVIGINHLEGHLLSPF 121
                         ID IA T              +A +I+    KP+I INHLE H L   
Sbjct:    64 SCIEESQLCFNDIDAIAVTAGPGLIGGLIVGIMMAKAISSVTGKPIIEINHLEAHALIIR 123

Query:   122 LSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGG 181
             +    + FPF+ L++SGGH Q +    +  Y+ LG +LDD+ G+ FDK+A+ML+LGYPGG
Sbjct:   124 MFYE-IDFPFLLLIMSGGHCQFLVAYDVRCYYKLGSSLDDSLGEVFDKVARMLNLGYPGG 182

Query:   182 PEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARG 241
             P I   S  GD   +  PR +      +FSFSGLKT+V N+I   K  +  +   NI+  
Sbjct:   183 PIIEEKSLLGDSGSFTLPRALTNRPGCDFSFSGLKTAVRNIIAGQKCIN-HELVCNISAS 241

Query:   242 FLDAIIDVLTFK---CIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYP 296
             F D + D+L  +    I   K+    INKLVV GGV ANK LR ++++      + + YP
Sbjct:   242 FQDCVGDILVNRINNAIVMSKDIDHRINKLVVTGGVAANKLLRNRMSVCANDNGFEILYP 301

Query:   297 KKEFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
               + CTDNG MI +AG   +   Y S  N  F  + +W +  +
Sbjct:   302 PSKLCTDNGVMIGWAGIENLAKGYVS--NLNFFPRARWPLENL 342

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7NUE3	GCP_CHRVO	No assigned EC number	0.5145	0.9823	0.9765	yes	N/A
B2U928	GCP_RALPJ	No assigned EC number	0.5306	0.9970	0.9740	yes	N/A
Q8P494	GCP_XANCP	No assigned EC number	0.4824	0.9882	0.9463	yes	N/A
Q3JKA5	GCP_BURP1	No assigned EC number	0.5362	0.9970	0.9768	yes	N/A
Q8PFV1	GCP_XANAC	No assigned EC number	0.4853	0.9882	0.9517	yes	N/A
B2FK06	GCP_STRMK	No assigned EC number	0.4824	0.9882	0.9824	yes	N/A
A0AYZ2	GCP_BURCH	No assigned EC number	0.5391	0.9970	0.9768	yes	N/A
Q0K862	GCP_CUPNH	No assigned EC number	0.5441	0.9941	0.9796	yes	N/A
Q8XX97	GCP_RALSO	No assigned EC number	0.5306	0.9970	0.9740	yes	N/A
Q62DT7	GCP_BURMA	No assigned EC number	0.5362	0.9970	0.9768	yes	N/A
Q0AJ91	GCP_NITEC	No assigned EC number	0.5249	0.9911	0.9940	yes	N/A
Q4UPU5	GCP_XANC8	No assigned EC number	0.4824	0.9882	0.9463	yes	N/A
C1DB12	GCP_LARHH	No assigned EC number	0.5116	0.9882	0.9710	yes	N/A
A4SZK1	GCP_POLSQ	No assigned EC number	0.5240	0.9911	0.9411	yes	N/A
B0U4B5	GCP_XYLFM	No assigned EC number	0.4853	0.9882	0.9626	yes	N/A
Q87B17	GCP_XYLFT	No assigned EC number	0.4853	0.9882	0.9626	yes	N/A
Q3BNE2	GCP_XANC5	No assigned EC number	0.4896	0.9793	0.9405	yes	N/A
Q474C0	GCP_CUPPJ	No assigned EC number	0.5529	0.9941	0.9796	yes	N/A
Q13RW9	GCP_BURXL	No assigned EC number	0.5483	0.9970	0.9883	yes	N/A
B2JP66	GCP_BURP8	No assigned EC number	0.55	0.9970	0.9912	yes	N/A
B2I7X4	GCP_XYLF2	No assigned EC number	0.4853	0.9882	0.9626	yes	N/A
Q0BAL6	GCP_BURCM	No assigned EC number	0.5449	0.9970	0.9768	yes	N/A
A4JLT6	GCP_BURVG	No assigned EC number	0.5420	0.9970	0.9768	yes	N/A
Q393P6	GCP_BURS3	No assigned EC number	0.5333	0.9970	0.9768	yes	N/A
Q2T7N3	GCP_BURTA	No assigned EC number	0.5333	0.9970	0.9768	yes	N/A
B4EN31	GCP_BURCJ	No assigned EC number	0.5304	0.9970	0.9768	yes	N/A
A1VM52	GCP_POLNA	No assigned EC number	0.5043	0.9941	0.9466	yes	N/A
Q63JF6	GCP_BURPS	No assigned EC number	0.5362	0.9970	0.9768	yes	N/A
A4G2A7	GCP_HERAR	No assigned EC number	0.6029	0.9970	0.9883	yes	N/A
B0RXI2	GCP_XANCB	No assigned EC number	0.4824	0.9882	0.9463	yes	N/A
A1W9P4	GCP_ACISJ	No assigned EC number	0.4970	0.9970	0.9684	yes	N/A
Q2Y7B6	GCP_NITMU	No assigned EC number	0.5364	0.9823	0.9596	yes	N/A
Q9PG67	GCP_XYLFA	No assigned EC number	0.4853	0.9882	0.9626	yes	N/A
B3R5H2	GCP_CUPTR	No assigned EC number	0.5411	0.9941	0.9796	yes	N/A
A1KAI4	GCP_AZOSB	No assigned EC number	0.5014	0.9941	0.9825	yes	N/A
Q1LK37	GCP_RALME	No assigned EC number	0.5529	0.9941	0.9739	yes	N/A
C5CT30	GCP_VARPS	No assigned EC number	0.5072	0.9970	0.9602	yes	N/A
B1K3S7	GCP_BURCC	No assigned EC number	0.5391	0.9970	0.9768	yes	N/A
B1Z1G4	GCP_BURA4	No assigned EC number	0.5449	0.9970	0.9768	yes	N/A
B1XVZ2	GCP_POLNS	No assigned EC number	0.5170	0.9941	0.9439	yes	N/A
A3P7W1	GCP_BURP0	No assigned EC number	0.5362	0.9970	0.9768	yes	N/A
Q1GYU4	GCP_METFK	No assigned EC number	0.5529	0.9882	0.9882	yes	N/A
Q47IP4	GCP_DECAR	No assigned EC number	0.5411	0.9941	0.9796	yes	N/A
B4SHI9	GCP_STRM5	No assigned EC number	0.4853	0.9882	0.9824	yes	N/A
A9ANA0	GCP_BURM1	No assigned EC number	0.5346	0.9941	0.9739	yes	N/A
Q0HSD5	GCP_SHESR	No assigned EC number	0.4955	0.9852	0.9881	yes	N/A
Q82XN2	GCP_NITEU	No assigned EC number	0.5117	0.9911	0.9970	yes	N/A
Q1BLY9	GCP_BURCA	No assigned EC number	0.5391	0.9970	0.9768	yes	N/A
Q5QY46	GCP_IDILO	No assigned EC number	0.5073	0.9852	0.9709	yes	N/A
A1TP41	GCP_ACIAC	No assigned EC number	0.5043	0.9941	0.9683	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24	0.921
3rd Layer	3.4.24.57	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	339
PRK09604	332	PRK09604, PRK09604, UGMP family protein; Validated	0.0
TIGR03723	314	TIGR03723, T6A_YgjD, tRNA threonylcarbamoyl adenos	1e-177
COG0533	342	COG0533, QRI7, Metal-dependent proteases with poss	1e-163
TIGR00329	305	TIGR00329, gcp_kae1, metallohydrolase, glycoprotea	1e-130
pfam00814	271	pfam00814, Peptidase_M22, Glycoprotease family	1e-107
TIGR03722	322	TIGR03722, arch_KAE1, universal archaeal protein K	5e-62
PRK14878	323	PRK14878, PRK14878, UGMP family protein; Provision	2e-56
PRK09605	535	PRK09605, PRK09605, bifunctional UGMP family prote	1e-55
PTZ00340	345	PTZ00340, PTZ00340, O-sialoglycoprotein endopeptid	2e-42
TIGR03725	202	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenos	1e-11
COG1214	220	COG1214, COG1214, Inactive homolog of metal-depend	6e-11
COG0068	750	COG0068, HypF, Hydrogenase maturation factor [Post	8e-09
TIGR00143	711	TIGR00143, hypF, [NiFe] hydrogenase maturation pro	0.003

>gnl|CDD|236585 PRK09604, PRK09604, UGMP family protein; Validated

 Score =  509 bits (1313), Expect = 0.0
 Identities = 179/339 (52%), Positives = 238/339 (70%), Gaps = 10/339 (2%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           M+ILGIE+SCD++ +A+ D   + L S+V+ SQ  +H  YGGVVPELA+R H++ I+PL+
Sbjct: 1   MLILGIETSCDETSVAVVDDG-RGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLI 59

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            + LK + L L+ ID IA T GPGL G+LLVG S A ++AL++NKP+IG+NHLEGHLL+P
Sbjct: 60  EEALKEAGLTLEDIDAIAVTAGPGLVGALLVGVSFAKALALALNKPLIGVNHLEGHLLAP 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
           FL      FPF+ALLVSGGHTQL+ V  IG+Y LLGETLDDAAG+ FDK+AK+L LGYPG
Sbjct: 120 FLEEE-PEFPFLALLVSGGHTQLVLVKGIGDYELLGETLDDAAGEAFDKVAKLLGLGYPG 178

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
           GP I  +++ GDP+ +KFPRPM      +FSFSGLKT+VLN I+  +       KA+IA 
Sbjct: 179 GPAIDKLAKQGDPDAFKFPRPMDR-PGLDFSFSGLKTAVLNTIEKSEQT-----KADIAA 232

Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
            F  A++DVL  K   ALK TG+  LVV GGV AN  LR++L  L K+    VF P  + 
Sbjct: 233 SFQAAVVDVLVIKTKRALKQTGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKL 292

Query: 301 CTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
           CTDN AMIA AG  R++    S+   + N +P+W ++++
Sbjct: 293 CTDNAAMIAAAGYERLKAGEFSD--LDLNARPRWPLDEL 329

Length = 332

>gnl|CDD|234330 TIGR03723, T6A_YgjD, tRNA threonylcarbamoyl adenosine modification protein YgjD

 Score =  493 bits (1273), Expect = e-177
 Identities = 174/315 (55%), Positives = 228/315 (72%), Gaps = 1/315 (0%)

Query: 3   ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSK 62
           ILGIE+SCD++ +A+ D   K L S+V+ SQ  +H  YGGVVPELA+R H++ I PL+ +
Sbjct: 1   ILGIETSCDETAVAIVDDG-KGLLSNVVASQIELHARYGGVVPELASRAHLENIPPLIEE 59

Query: 63  LLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFL 122
            L  + L L  ID IA T GPGL G+LLVG S A ++AL++NKP+IG+NHLEGHLL+PFL
Sbjct: 60  ALAEAGLTLSDIDAIAVTAGPGLIGALLVGVSFAKALALALNKPLIGVNHLEGHLLAPFL 119

Query: 123 SNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGP 182
            +  L FPF+ALLVSGGHTQL+ V  +G+Y LLGETLDDAAG+ FDK+A++L LGYPGGP
Sbjct: 120 EDKPLEFPFLALLVSGGHTQLVLVKGVGDYELLGETLDDAAGEAFDKVARLLGLGYPGGP 179

Query: 183 EISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGF 242
            I  +++ GDP  +KFPRPM      +FSFSGLKT+VLN+I+ +K    + +KA+IA  F
Sbjct: 180 AIDKLAKEGDPKAFKFPRPMTGRPGLDFSFSGLKTAVLNLIEKLKQKGEELDKADIAASF 239

Query: 243 LDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCT 302
             A++DVL  K   ALK+TG+  LVV GGV AN +LR++L  L ++    VF P  E CT
Sbjct: 240 QAAVVDVLVEKTKRALKDTGLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCT 299

Query: 303 DNGAMIAFAGAMRIE 317
           DN AMIA AG  R++
Sbjct: 300 DNAAMIAAAGYERLK 314

This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas (which lack a cell wall). A reasonable hypothesis is that virulence-related activities after export are secondary to a bacterial domain-wide unknown function [Protein synthesis, tRNA and rRNA base modification]. Length = 314

>gnl|CDD|223607 COG0533, QRI7, Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]

 Score =  457 bits (1179), Expect = e-163
 Identities = 167/341 (48%), Positives = 238/341 (69%), Gaps = 6/341 (1%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           MIILGIE+SCD++G+A+ D     + ++V+ SQ  +H  YGGVVPELA+R H++ I PL+
Sbjct: 1   MIILGIETSCDETGVAIVDEE--KILANVVASQIELHARYGGVVPELASRHHVENIPPLI 58

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            + L  + + L+ ID IA T GPGL G+LLVG++ A ++AL++NKP+I +NHLEGH+ + 
Sbjct: 59  EEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALNKPLIPVNHLEGHIEAA 118

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L    L FP +ALLVSGGHTQLI V  IG Y +LGETLDDAAG+ FDK+A++L LGYPG
Sbjct: 119 RLETG-LAFPPVALLVSGGHTQLIAVRGIGRYEVLGETLDDAAGEAFDKVARLLGLGYPG 177

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKE--KANI 238
           GP I  +++ GDP+ ++FPRPM+   N +FSFSGLKT+VL ++K +K      E  K +I
Sbjct: 178 GPAIEKLAKKGDPDAFEFPRPMVKGKNLDFSFSGLKTAVLRLLKKLKQKEELNEEDKEDI 237

Query: 239 ARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298
           A  F +A+ D+L  K   ALK+TG  +LV+ GGV AN +LR+ L  + K+    V+ P  
Sbjct: 238 AASFQEAVFDMLVEKTERALKHTGKKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPL 297

Query: 299 EFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
           E CTDN AMIA+AG +R +      S  + N++P+W+++++
Sbjct: 298 ELCTDNAAMIAYAGLLRYKAGR-FISPLDVNVRPRWRLDEV 337

Length = 342

>gnl|CDD|129429 TIGR00329, gcp_kae1, metallohydrolase, glycoprotease/Kae1 family

 Score =  372 bits (958), Expect = e-130
 Identities = 158/306 (51%), Positives = 216/306 (70%), Gaps = 1/306 (0%)

Query: 4   LGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKL 63
           LGIE+SCDD+G+A+ D    N+ +++  SQ  +H +YGGVVPE A+R H + I PLL + 
Sbjct: 1   LGIETSCDDTGVAIVDEE-GNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERA 59

Query: 64  LKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLS 123
           L  SN++  +ID+IAYT+GPGL GSL VG++ A S+ALS++KP+IG+NHL GH+ +P L 
Sbjct: 60  LIESNVDKSEIDLIAYTQGPGLGGSLRVGATFARSLALSLDKPLIGVNHLLGHIYAPRLD 119

Query: 124 NNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPE 183
            N L FPF++LLVSGGHTQ+I V  IG+Y +LGETLDDA G+ FDK+A++L LGYPGGP+
Sbjct: 120 TNILQFPFVSLLVSGGHTQIIAVKGIGDYEVLGETLDDAVGEAFDKVARLLGLGYPGGPK 179

Query: 184 ISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFL 243
           I  +++ GD   + FP P       +FSFSGLKT+ L  I+ +K +  +  K +IA  F 
Sbjct: 180 IEELAKKGDKLPFYFPLPYTVKPMLDFSFSGLKTAALRKIEKLKKNLNEATKEDIAYSFQ 239

Query: 244 DAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTD 303
           +   D L  K   ALK+TG  +LV+VGGV ANK+LR+ L  L ++ N   +YP  EFC+D
Sbjct: 240 ETAFDHLIEKTKRALKDTGPKELVLVGGVSANKRLREMLETLCQELNVEFYYPPLEFCSD 299

Query: 304 NGAMIA 309
           NGAMIA
Sbjct: 300 NGAMIA 305

This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 305

>gnl|CDD|216132 pfam00814, Peptidase_M22, Glycoprotease family

 Score =  314 bits (806), Expect = e-107
 Identities = 133/287 (46%), Positives = 186/287 (64%), Gaps = 16/287 (5%)

Query: 24  NLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGP 83
            + ++VI SQ  +H  YGGVVPELA+R H + ++PL+ + L  + L L+ +D IA T GP
Sbjct: 1   EILANVILSQKDLHAPYGGVVPELASRHHSERLLPLIEEALAEAGLSLEDLDAIAVTAGP 60

Query: 84  GLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQL 143
           GL   L VG++ A  +AL+++KP++G+NHLE H L+  L    L FP + LLVSGGHTQ+
Sbjct: 61  GLFTGLRVGATFAKGLALALDKPLVGVNHLEAHALAARLETG-LEFP-VVLLVSGGHTQV 118

Query: 144 IKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPML 203
                 G Y +LGETLDDAAG+ FDK+A++L L YPGGP I  +++ G    ++FPRP  
Sbjct: 119 YAAKD-GRYEILGETLDDAAGEAFDKVARLLGLPYPGGPAIEKLAKEGA---FEFPRPK- 173

Query: 204 YTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGI 263
                +FSFSGLKT+VL +I+       K+ K +IA  F +A+ D L  K   ALK  G 
Sbjct: 174 ---GMDFSFSGLKTAVLRLIEK------KEPKEDIAASFQEAVFDHLAEKTERALKLPGA 224

Query: 264 NKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF 310
            +LV++GGV ANK+LR+ L  +  +    +F P  E+CTDNGAMIA+
Sbjct: 225 KELVILGGVAANKRLREALTEMAVETGVKLFAPPLEYCTDNGAMIAW 271

The Peptidase M22 proteins are part of the HSP70-actin superfamily. The region represented here is an insert into the fold and is not found in the rest of the family (beyond the Peptidase M22 family). Included in this family are the Rhizobial NodU proteins and the HypF regulator. This region also contains the histidine dyad believed to coordinate the metal ion and hence provide catalytic activity. Interestingly the histidines are not well conserved, and there is a lack of experimental evidence to support peptidase activity as a general property of this family. There also appear to be instances of this domain outside of the HSP70-actin superfamily. Length = 271

>gnl|CDD|234329 TIGR03722, arch_KAE1, universal archaeal protein Kae1

 Score =  200 bits (510), Expect = 5e-62
 Identities = 106/346 (30%), Positives = 177/346 (51%), Gaps = 38/346 (10%)

Query: 4   LGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKL 63
           LGIE +    G+ + D+  + L      S   V ++ GG+ P  AA  H +    L+ + 
Sbjct: 1   LGIEGTAHTFGVGIVDSDGEIL---ANVSDTYVPEK-GGIHPREAAEHHAEVAPKLIKEA 56

Query: 64  LKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLS 123
           L+ + + ++ ID +A+++GPGL   L VG++ A ++AL +NKP++G+NH   H     + 
Sbjct: 57  LEEAGISIEDIDAVAFSQGPGLGPCLRVGATAARALALKLNKPLVGVNHCVAH-----IE 111

Query: 124 NNSLTFPF---IALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
              LT      + L VSGG+TQ+I   + G Y + GETLD   G+  DK A+ + LG+PG
Sbjct: 112 IGRLTTGAKDPVVLYVSGGNTQVIAYRN-GRYRVFGETLDIGLGNALDKFAREVGLGHPG 170

Query: 181 GPEISLISEFGDPNIYKFPRPMLYT-NNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIA 239
           GP+I  ++E G     K    + YT    + SFSGL T+ L   K            ++ 
Sbjct: 171 GPKIEELAEKG-----KEYIELPYTVKGMDLSFSGLLTAALRAYK------KGARLEDVC 219

Query: 240 RGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKE 299
               +    +L      AL +TG  ++++VGGV AN++LR+ L ++ +      + P  E
Sbjct: 220 YSLQETAFAMLVEVTERALAHTGKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPE 279

Query: 300 FCTDNGAMIAFAGAMRIENNYKS------ESNYEFNIKPQWKINKI 339
           +  DNGAMIA+ G +     YK       E +    ++ +W+ +++
Sbjct: 280 YAGDNGAMIAYTGLL----MYKHGVTIPVEESR---VRQRWRTDEV 318

This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica [DNA metabolism, DNA replication, recombination, and repair]. Length = 322

>gnl|CDD|184878 PRK14878, PRK14878, UGMP family protein; Provisional

 Score =  185 bits (472), Expect = 2e-56
 Identities = 105/342 (30%), Positives = 173/342 (50%), Gaps = 31/342 (9%)

Query: 4   LGIESSCDDSGLAL--YDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLS 61
           LGIES+    G+ +   D  + N+R   +        E GG+ P  AA+ H +    LL 
Sbjct: 1   LGIESTAHTLGVGIVKEDKVLANVRDTYV-------PEKGGIHPREAAQHHAEVAPELLR 53

Query: 62  KLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPF 121
           K L+ + + ++ ID +A ++GPGL  +L VG++ A ++AL  NKP++ +NH   H     
Sbjct: 54  KALEKAGISIEDIDAVAVSQGPGLGPALRVGATAARALALKYNKPLVPVNHCIAH----- 108

Query: 122 LSNNSLTFPF---IALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGY 178
           +    LT      + L VSGG+TQ +     G Y + GETLD A G+  D  A+ + L  
Sbjct: 109 IEIGRLTTGAKDPVVLYVSGGNTQ-VLAFRGGRYRVFGETLDIAIGNALDTFAREVGLAP 167

Query: 179 PGGPEISLISEFGDPNIYKFPRPMLYT-NNFNFSFSGLKTSVLNVIKNIKLDSLKKEKAN 237
           PGGP I   +E G+    + P    Y     + SFSGL T+ L      +L   K+   +
Sbjct: 168 PGGPAIEKCAEKGE-KYIELP----YVVKGQDLSFSGLLTAAL------RLYKGKERLED 216

Query: 238 IARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPK 297
           +     +    +L      AL +TG  ++++VGGV AN++LR+KL I+ +      +   
Sbjct: 217 VCYSLRETAFAMLVEVTERALAHTGKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVP 276

Query: 298 KEFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
            E+  DNGAMIA+ G +  ++         F ++ +W+++++
Sbjct: 277 PEYAGDNGAMIAYTGLLAYKHGVTIPPEESF-VRQRWRLDEV 317

Length = 323

>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family protein/serine/threonine protein kinase; Validated

 Score =  189 bits (482), Expect = 1e-55
 Identities = 101/324 (31%), Positives = 167/324 (51%), Gaps = 29/324 (8%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           MI+LGIE +   +   + D+    L      S        GG+ P  AA  H + I  ++
Sbjct: 1   MIVLGIEGTAWKTSAGIVDSDGDVL---FNESDPYK-PPSGGIHPREAAEHHAEAIPKVI 56

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGH---- 116
            + L+ + L+ + ID++A+++GPGL   L V ++ A ++ALS++ P+IG+NH   H    
Sbjct: 57  KEALEEAGLKPEDIDLVAFSQGPGLGPCLRVVATAARALALSLDVPLIGVNHCVAHVEIG 116

Query: 117 -LLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLD 175
            L +          P + L VSGG+TQ++   + G Y + GETLD   G+  DK A+ + 
Sbjct: 117 RLTTGAED------P-VTLYVSGGNTQVLAYLN-GRYRVFGETLDIGVGNALDKFARHVG 168

Query: 176 LGYPGGPEISLISEFGDPNIYKFPRPMLYT-NNFNFSFSGLKTSVLNVIKNIKLDSLKKE 234
           L +PGGP+I  +++ G   I   P    Y     +FSFSGL T+          D+  + 
Sbjct: 169 LPHPGGPKIEKLAKDGKKYI-DLP----YVVKGMDFSFSGLLTAAKR-----AYDA-GEP 217

Query: 235 KANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVF 294
             ++     +    +LT     AL +TG +++++VGGV AN +LR+ L  + ++     +
Sbjct: 218 LEDVCYSLQETAFAMLTEVTERALAHTGKDEVLLVGGVAANNRLREMLKEMCEERGADFY 277

Query: 295 YPKKEFCTDNGAMIAFAGAMRIEN 318
            P+  FC DNGAMIA+ G +  + 
Sbjct: 278 VPEPRFCGDNGAMIAWLGLLMYKA 301

Length = 535

>gnl|CDD|240369 PTZ00340, PTZ00340, O-sialoglycoprotein endopeptidase-like protein; Provisional

 Score =  149 bits (379), Expect = 2e-42
 Identities = 93/330 (28%), Positives = 167/330 (50%), Gaps = 31/330 (9%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYG----GVVPELAARTHIQTI 56
            + LGIE S +  G+ +            I S N+          G +P   A+ H + I
Sbjct: 1   FLALGIEGSANKLGVGIVT------SDGEILS-NVRETYITPPGTGFLPRETAQHHREHI 53

Query: 57  IPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGH 116
           + L+ + L+ + +    I +I YT+GPG+   L VG+ +A +++L   KP++G+NH   H
Sbjct: 54  LSLVKEALEEAKITPSDISLICYTKGPGMGAPLSVGAVVARTLSLLWGKPLVGVNHCVAH 113

Query: 117 L-LSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLD 175
           + +   ++      P + L VSGG+TQ+I   S   Y + GET+D A G+  D+ A++L+
Sbjct: 114 IEMGRLVT--GAENP-VVLYVSGGNTQVIAY-SEHRYRIFGETIDIAVGNCLDRFARLLN 169

Query: 176 L-GYPG-GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIK-LDSLK 232
           L   P  G  I  +++ G  N+ + P         + SFSG+ T + +++++ +  D + 
Sbjct: 170 LSNDPAPGYNIEQLAKKGK-NLIELPYV---VKGMDMSFSGILTYIEDLVEHPQFKDVVS 225

Query: 233 KEKANIARGFLDAIIDVL---TFKCIA-----ALKNTGINKLVVVGGVGANKQLRKKLNI 284
           +        F D +   L    F  +      A+ + G N++++VGGVG N +L++ +  
Sbjct: 226 EIVPPEEEFFTDDLCFSLQETIFAMLVEVTERAMSHCGSNEVLIVGGVGCNLRLQEMMQQ 285

Query: 285 LKKQYNYTVFYPKKEFCTDNGAMIAFAGAM 314
           + K+    +F   + +C DNGAMIA+AG +
Sbjct: 286 MAKERGGKLFAMDERYCIDNGAMIAYAGLL 315

Length = 345

>gnl|CDD|234332 TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 23/115 (20%)

Query: 3   ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSK 62
           IL I++S +   +AL D     + +  I               E A R H + ++P++ +
Sbjct: 1   ILAIDTSTEALSVALLDD--GEILAERI---------------EEAGRNHSEILLPMIEE 43

Query: 63  LLKNSNLELKKIDIIAYTRGPGLPGS---LLVGSSIACSIALSINKPVIGINHLE 114
           LL  + L L+ +D IA   G   PGS   L +G + A  +AL++  P++G++ LE
Sbjct: 44  LLAEAGLSLQDLDAIAVGVG---PGSFTGLRIGLATAKGLALALGIPLVGVSSLE 95

This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI [Protein synthesis, tRNA and rRNA base modification]. Length = 202

>gnl|CDD|224135 COG1214, COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 60.9 bits (148), Expect = 6e-11
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 15/114 (13%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           M IL I++S     +ALY      + +                  E   R H + ++P++
Sbjct: 1   MKILAIDTSTSALSVALYLADDGKVLAEHT---------------EKLKRNHAERLMPMI 45

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLE 114
            +LLK + L L+ +D IA  +GPG    L +G + A  +AL++N P++G++ LE
Sbjct: 46  DELLKEAGLSLQDLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVGVSSLE 99

Length = 220

>gnl|CDD|223146 COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 21/165 (12%)

Query: 163 AGDTFDKIAKMLDL----GYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTS 218
            G  FD +A +L +     Y G   ++L +   D +            ++ +        
Sbjct: 597 IGRVFDAVAALLGICETRTYEGEAAMALEA-LADQSD---------GVDYPYEIKNEDNQ 646

Query: 219 VL---NVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGAN 275
           VL    +I  +  D LK E   IA  F +A+ +      +   K  GINK+V+ GGV  N
Sbjct: 647 VLDLKELILGVLEDLLKDEPEKIATKFHNALAEGFAELAVELAKKYGINKVVLSGGVFQN 706

Query: 276 KQLRKKL-NILKKQYNYTVFYPKKEFCTDNGAMI--AFAGAMRIE 317
           + L ++L   LKK+  +   + ++    D G  +  A A A+ + 
Sbjct: 707 RLLLERLAKYLKKE-GFRFLFHQEVPAGDGGISLGQAVAAALELI 750

Length = 750

>gnl|CDD|232844 TIGR00143, hypF, [NiFe] hydrogenase maturation protein HypF

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 15/149 (10%)

Query: 164 GDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVI 223
           G  FD +A  L L           +  G+  I      +      N+ F  +K  VL+ +
Sbjct: 564 GRLFDAVAAALGL-------CGERTYEGEAAIALEALALRSDGIANYPFE-IKNKVLD-L 614

Query: 224 KNIKLDSLKK-----EKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQL 278
           K      L+      +++ IA      +   L     A     GI+K+V+ GGV  N+ L
Sbjct: 615 KEFYQRFLEDLLVGEDRSKIAHIAHKFVASGLVEIATAIAVPFGIHKIVISGGVFYNRLL 674

Query: 279 RKKLNILKKQYNYTVFYPKKEFCTDNGAM 307
            ++L    K   +   +  +     +G +
Sbjct: 675 LERLAKYLKGLGFQFLFH-RHLPPGDGGI 702

A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression [Protein fate, Protein modification and repair]. Length = 711

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	339
COG0533	342	QRI7 Metal-dependent proteases with possible chape	100.0
PRK09604	332	UGMP family protein; Validated	100.0
PTZ00340	345	O-sialoglycoprotein endopeptidase-like protein; Pr	100.0
TIGR03723	314	bact_gcp putative glycoprotease GCP. This model re	100.0
TIGR00329	305	gcp_kae1 metallohydrolase, glycoprotease/Kae1 fami	100.0
PRK14878	323	UGMP family protein; Provisional	100.0
TIGR03722	322	arch_KAE1 universal archaeal protein Kae1. This fa	100.0
PRK09605	535	bifunctional UGMP family protein/serine/threonine	100.0
KOG2707|consensus	405		100.0
PF00814	268	Peptidase_M22: Glycoprotease family; InterPro: IPR	100.0
KOG2708|consensus	336		100.0
COG2192	555	Predicted carbamoyl transferase, NodU family [Post	100.0
TIGR00143	711	hypF [NiFe] hydrogenase maturation protein HypF. A	100.0
COG0068	750	HypF Hydrogenase maturation factor [Posttranslatio	100.0
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	99.92
PF02543	360	CmcH_NodU: Carbamoyltransferase; InterPro: IPR0036	99.92
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	99.91
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	99.91
COG1924	396	Activator of 2-hydroxyglutaryl-CoA dehydratase (HS	99.9
TIGR03725	202	bact_YeaZ universal bacterial protein YeaZ. This f	99.85
COG1214	220	Inactive homolog of metal-dependent proteases, put	99.84
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	99.83
TIGR02259	432	benz_CoA_red_A benzoyl-CoA reductase, bcr type, su	99.8
PRK13317	277	pantothenate kinase; Provisional	99.67
TIGR00555	279	panK_eukar pantothenate kinase, eukaryotic/staphyl	99.16
PF01869	271	BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In	98.71
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	98.07
PRK03011	358	butyrate kinase; Provisional	97.98
PF03702	364	UPF0075: Uncharacterised protein family (UPF0075);	97.7
PLN02920	398	pantothenate kinase 1	97.64
PRK09585	365	anmK anhydro-N-acetylmuramic acid kinase; Reviewed	97.61
COG2971	301	Predicted N-acetylglucosamine kinase [Carbohydrate	97.49
TIGR02707	351	butyr_kinase butyrate kinase. This model represent	97.31
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	97.21
PF02782	198	FGGY_C: FGGY family of carbohydrate kinases, C-ter	97.21
PRK00976	326	hypothetical protein; Provisional	96.98
COG1940	314	NagC Transcriptional regulator/sugar kinase [Trans	96.92
COG2377	371	Predicted molecular chaperone distantly related to	96.87
PLN02902	876	pantothenate kinase	96.83
PF03630	341	Fumble: Fumble ; InterPro: IPR004567 Pantothenate	96.81
TIGR00744	318	ROK_glcA_fam ROK family protein (putative glucokin	96.33
PRK05082	291	N-acetylmannosamine kinase; Provisional	96.3
PRK09557	301	fructokinase; Reviewed	96.19
PF00370	245	FGGY_N: FGGY family of carbohydrate kinases, N-ter	95.96
smart00732	99	YqgFc Likely ribonuclease with RNase H fold. YqgF	95.86
PRK00047	498	glpK glycerol kinase; Provisional	95.79
TIGR01312	481	XylB D-xylulose kinase. D-xylulose kinase (XylB) g	95.75
PTZ00294	504	glycerol kinase-like protein; Provisional	95.69
PRK13310	303	N-acetyl-D-glucosamine kinase; Provisional	95.63
PRK15027	484	xylulokinase; Provisional	95.4
PRK09698	302	D-allose kinase; Provisional	95.35
TIGR01311	493	glycerol_kin glycerol kinase. This model describes	95.32
TIGR01314	505	gntK_FGGY gluconate kinase, FGGY type. Gluconate i	95.28
PRK10331	470	L-fuculokinase; Provisional	95.26
PRK10640	471	rhaB rhamnulokinase; Provisional	95.18
KOG2201|consensus	371		95.17
COG3426	358	Butyrate kinase [Energy production and conversion]	94.97
TIGR02628	465	fuculo_kin_coli L-fuculokinase. Members of this fa	94.82
PRK05183	616	hscA chaperone protein HscA; Provisional	94.81
PTZ00297	1452	pantothenate kinase; Provisional	94.65
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	94.42
PRK10939	520	autoinducer-2 (AI-2) kinase; Provisional	94.34
PLN02295	512	glycerol kinase	94.29
PRK04123	548	ribulokinase; Provisional	94.21
TIGR02627	454	rhamnulo_kin rhamnulokinase. This model describes	94.04
TIGR01234	536	L-ribulokinase L-ribulokinase. This enzyme catalyz	93.89
PLN02295	512	glycerol kinase	93.84
COG0554	499	GlpK Glycerol kinase [Energy production and conver	93.83
COG0554	499	GlpK Glycerol kinase [Energy production and conver	93.67
KOG2517|consensus	516		93.67
TIGR01315	541	5C_CHO_kinase FGGY-family pentulose kinase. This m	93.58
PRK13410	668	molecular chaperone DnaK; Provisional	93.55
TIGR01315	541	5C_CHO_kinase FGGY-family pentulose kinase. This m	93.39
PRK00039	164	ruvC Holliday junction resolvase; Reviewed	93.33
PTZ00294	504	glycerol kinase-like protein; Provisional	93.19
PRK10939	520	autoinducer-2 (AI-2) kinase; Provisional	93.1
PRK00047	498	glpK glycerol kinase; Provisional	93.05
COG1070	502	XylB Sugar (pentulose and hexulose) kinases [Carbo	92.96
PLN02669	556	xylulokinase	92.87
PRK01433	595	hscA chaperone protein HscA; Provisional	92.74
TIGR01311	493	glycerol_kin glycerol kinase. This model describes	92.5
COG1070	502	XylB Sugar (pentulose and hexulose) kinases [Carbo	92.49
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	92.33
PF03652	135	UPF0081: Uncharacterised protein family (UPF0081);	92.26
PRK04123	548	ribulokinase; Provisional	91.91
COG0443	579	DnaK Molecular chaperone [Posttranslational modifi	91.8
COG5146	342	PanK Pantothenate kinase, acetyl-CoA regulated [Co	91.65
PRK00109	138	Holliday junction resolvase-like protein; Reviewed	91.44
TIGR01234	536	L-ribulokinase L-ribulokinase. This enzyme catalyz	91.29
PRK15027	484	xylulokinase; Provisional	90.39
TIGR01312	481	XylB D-xylulose kinase. D-xylulose kinase (XylB) g	90.25
TIGR01314	505	gntK_FGGY gluconate kinase, FGGY type. Gluconate i	89.81
PLN02669	556	xylulokinase	89.33
PRK10331	470	L-fuculokinase; Provisional	89.32
TIGR02628	465	fuculo_kin_coli L-fuculokinase. Members of this fa	88.74
COG0816	141	Predicted endonuclease involved in recombination (	88.48
PRK13321	256	pantothenate kinase; Reviewed	88.06
PRK13318	258	pantothenate kinase; Reviewed	86.94
PTZ00400	663	DnaK-type molecular chaperone; Provisional	86.75
cd00529	154	RuvC_resolvase Holliday junction resolvases (HJRs)	86.69
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	86.6
PRK13311	256	N-acetyl-D-glucosamine kinase; Provisional	86.29
COG4020	332	Uncharacterized protein conserved in archaea [Func	85.92
PRK13331	251	pantothenate kinase; Reviewed	85.47
CHL00094	621	dnaK heat shock protein 70	85.46
PRK13928	336	rod shape-determining protein Mbl; Provisional	85.34
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	84.82
PRK13324	258	pantothenate kinase; Reviewed	84.45
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	84.24
COG1548	330	Predicted transcriptional regulator/sugar kinase [	83.91
PF05378	176	Hydant_A_N: Hydantoinase/oxoprolinase N-terminal r	83.51
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	83.28
PRK13927	334	rod shape-determining protein MreB; Provisional	83.03
PRK13411	653	molecular chaperone DnaK; Provisional	82.48
PF11215	138	DUF3010: Protein of unknown function (DUF3010); In	82.05
PLN03184	673	chloroplast Hsp70; Provisional	81.67
PRK13930	335	rod shape-determining protein MreB; Provisional	81.64
PRK07157	400	acetate kinase; Provisional	81.35
PRK13929	335	rod-share determining protein MreBH; Provisional	80.95
PF07318	343	DUF1464: Protein of unknown function (DUF1464); In	80.88
COG1069	544	AraB Ribulose kinase [Energy production and conver	80.78

>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.9e-72  Score=510.97  Aligned_cols=335  Identities=49%  Similarity=0.861  Sum_probs=312.9

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |++|||||||+++++++++++ + |++..+.+|++.|.+|+|++|+.++++|.+.++..++++|+++|++++|||.||++
T Consensus         1 m~iLGIEtScDeT~vaIv~~~-~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T   78 (342)
T COG0533           1 MIILGIETSCDETGVAIVDEE-K-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVT   78 (342)
T ss_pred             CeEEEEEcccccceeEEEecc-C-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEe
Confidence            899999999999999999999 4 99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccC
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLD  160 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~  160 (339)
                      .|||...+|+||..+||+||..+++|+++|+|+.+|+++++++.+. .+|+++++++||||+++.+++.+++++++++.|
T Consensus        79 ~gPGL~gaL~VG~~~Ak~LA~a~~kPli~VnH~~gHi~a~~l~~~~-~~p~v~LlVSGGHTqli~~~~~g~y~ilGeTlD  157 (342)
T COG0533          79 AGPGLGGALLVGATAAKALALALNKPLIPVNHLEGHIEAARLETGL-AFPPVALLVSGGHTQLIAVRGIGRYEVLGETLD  157 (342)
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhCCCEeecchHHHHHHHHHhccCC-CCCcEEEEEecCceEEEEEcCCCcEEEEeeech
Confidence            9999999999999999999999999999999999999999998763 479999999999999999998899999999999


Q ss_pred             CcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhcc--ccccccHHHH
Q psy9394         161 DAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKL--DSLKKEKANI  238 (339)
Q Consensus       161 ~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~di  238 (339)
                      .++|..||++|++||++||||+.+|.+|..|++..+.||+|+...++++||||||+|++.+.+++...  +....+++||
T Consensus       158 dA~Gea~DKvAR~lGL~yPGGp~Ie~lA~~G~~~~~~fP~~~~~~~~~DfSFSGLkTa~~~~~~~~~~~~~~~~~d~~di  237 (342)
T COG0533         158 DAAGEAFDKVARLLGLGYPGGPAIEKLAKKGDPDAFEFPRPMVKGKNLDFSFSGLKTAVLRLLKKLKQKEELNEEDKEDI  237 (342)
T ss_pred             hhhhHHHHHHHHHhCCCCCCcHHHHHHHhcCCCCceeCCccccCCCCcceehHhHHHHHHHHHHhcccccccchhhHHHH
Confidence            99999999999999999999999999999998767888887655556899999999999999886532  1223457889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHh
Q psy9394         239 ARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIEN  318 (339)
Q Consensus       239 Aa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~  318 (339)
                      |++||+++.+.|++.++|+.++++.+.++++|||++|+.|++++.++....|+++|+||..+|+|||+|||++++.++++
T Consensus       238 a~sfQ~av~~~L~~kt~rAl~~~~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~~lCtDNaaMIA~ag~~~~~~  317 (342)
T COG0533         238 AASFQEAVFDMLVEKTERALKHTGKKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPLELCTDNAAMIAYAGLLRYKA  317 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCChHhccchHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             cCCCCCCcccccccCCCCCCC
Q psy9394         319 NYKSESNYEFNIKPQWKINKI  339 (339)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~  339 (339)
                      |.+.++ .+++++|||+++++
T Consensus       318 g~~~~~-~~~~~~~r~~~~~~  337 (342)
T COG0533         318 GRFISP-LDVNVRPRWRLDEV  337 (342)
T ss_pred             CCCCCC-cccccCCCCchhhc
Confidence            987652 89999999999974

>PRK09604 UGMP family protein; Validated

Probab=100.00  E-value=6.5e-68  Score=498.79  Aligned_cols=329  Identities=54%  Similarity=0.928  Sum_probs=301.9

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |+|||||||++++++||++++ ++++++.+.++.+.+++|+|..|+.+.++|.+.++++++++|+++|++++|||.|+|+
T Consensus         1 m~iLgIdTS~~~~sval~~~~-~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~did~iavt   79 (332)
T PRK09604          1 MLILGIETSCDETSVAVVDDG-RGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLEDIDAIAVT   79 (332)
T ss_pred             CeEEEEEccccceEEEEEECC-CcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEe
Confidence            999999999999999999876 5799888777777788999999999999999999999999999999999999999999


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccC
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLD  160 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~  160 (339)
                      .|||+|||+|+|+.+||+|+..+++|+++|+||++|++++++.+++ ++|++++++|||++.++.+.+.+++++++++.+
T Consensus        80 ~GPG~~tglrvg~~~Ak~La~~~~ipl~~v~h~~~ha~~a~~~s~~-~~~~lvl~vsGG~s~~~~~~~~~~~~~l~~t~d  158 (332)
T PRK09604         80 AGPGLVGALLVGVSFAKALALALNKPLIGVNHLEGHLLAPFLEEEP-EFPFLALLVSGGHTQLVLVKGIGDYELLGETLD  158 (332)
T ss_pred             cCCCcHHhHHHHHHHHHHHHHHhCCCEEeecCHHHHHHhhhhccCC-CCCEEEEEecCCccEEEEEcCCCcEEEccccCC
Confidence            9999999999999999999999999999999999999999999987 368999999999999998887789999999889


Q ss_pred             CcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHH
Q psy9394         161 DAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR  240 (339)
Q Consensus       161 ~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa  240 (339)
                      .|+|.+||+++++||+.+++|+++|+||+||++..+++|.++ ..++++|+|+++++.+.++++..     ..++.+||+
T Consensus       159 ~slG~~yd~~t~~LG~~~~~g~kvmgLA~~g~~~~~~~~~~~-~~~~~~~sfsg~~~~~~~~~~~~-----~~~~~~iA~  232 (332)
T PRK09604        159 DAAGEAFDKVAKLLGLGYPGGPAIDKLAKQGDPDAFKFPRPM-DRPGLDFSFSGLKTAVLNTIEKS-----EQTKADIAA  232 (332)
T ss_pred             chhhHHHHHHHHHcCCCCCCcHHHHHHHHhCCCCeEeCCccc-cCCCccEecCcHHHHHHHHHHhc-----CCCHHHHHH
Confidence            999999999999999999999999999999987545566555 32467899999988777766531     245899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       241 ~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      ++|+++++.++++++++.+++++++||++||||+|+.++++|.+.++++++++|+||+.||||||+|||++++.+++.|.
T Consensus       233 s~q~~l~~~l~~~~~~~~~~~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g~  312 (332)
T PRK09604        233 SFQAAVVDVLVIKTKRALKQTGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAGE  312 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999889999999999999999999999999999997


Q ss_pred             CCCCCcccccccCCCCCCC
Q psy9394         321 KSESNYEFNIKPQWKINKI  339 (339)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~  339 (339)
                      .++  .++.++|||+++++
T Consensus       313 ~~~--~~~~~~~~~~~~~~  329 (332)
T PRK09604        313 FSD--LDLNARPRWPLDEL  329 (332)
T ss_pred             CCC--CccccCCCCCcccc
Confidence            766  67999999999875

>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional

Probab=100.00  E-value=6.4e-67  Score=486.75  Aligned_cols=326  Identities=28%  Similarity=0.511  Sum_probs=296.0

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccC-CccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYG-GVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAY   79 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~-G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~   79 (339)
                      |+||||||||+++|+||++++ ++++++.+.+|.   .+|+ |++|+.+.+.|.+.++++++++|+++|++++|||.|+|
T Consensus         1 ~~iLgIETScd~tsvAl~~~~-~~il~~~~~sq~---~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iav   76 (345)
T PTZ00340          1 FLALGIEGSANKLGVGIVTSD-GEILSNVRETYI---TPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDISLICY   76 (345)
T ss_pred             CeEEEEEccchhhEEEEEECC-CcEEEEEEeecc---ccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence            899999999999999999864 469988877774   6788 99999999999999999999999999999999999999


Q ss_pred             eCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeecc
Q psy9394          80 TRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETL  159 (339)
Q Consensus        80 ~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~  159 (339)
                      +.|||+||+||||+.+||+|+..+++|+++|+|+++|++++++.++. ++| ++++++||||+++. .+.+++++++++.
T Consensus        77 t~GPGl~~~LrVG~~~Ak~LA~a~~~PligV~HlegHi~a~~l~~~~-~~P-l~LlVSGGhT~l~~-~~~~~~~ilG~T~  153 (345)
T PTZ00340         77 TKGPGMGAPLSVGAVVARTLSLLWGKPLVGVNHCVAHIEMGRLVTGA-ENP-VVLYVSGGNTQVIA-YSEHRYRIFGETI  153 (345)
T ss_pred             ecCCCcHhhHHHHHHHHHHHHHHcCCCEeecchHHHHHHHHhhccCC-CCC-eEEEEeCCceEEEE-ecCCeEEEEEeec
Confidence            99999999999999999999999999999999999999999997764 478 99999999999998 5668999999999


Q ss_pred             CCcchhhhHHHHhHcCCC-CC-cHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhcc-----c---
Q psy9394         160 DDAAGDTFDKIAKMLDLG-YP-GGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKL-----D---  229 (339)
Q Consensus       160 ~~s~G~~~d~va~~LG~~-~~-gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~-----~---  229 (339)
                      |.++|+.||+++++||++ || ||+.+|.+|..|++ .+.+|.++   ++++|||+|++|++.+++++.+.     +   
T Consensus       154 Dda~Gea~DKvar~LGL~~yp~gGp~iE~lA~~g~~-~~~~P~~~---~~~dfSFSGlkTav~~~i~~~~~~~~~~~~~~  229 (345)
T PTZ00340        154 DIAVGNCLDRFARLLNLSNDPAPGYNIEQLAKKGKN-LIELPYVV---KGMDMSFSGILTYIEDLVEHPQFKDVVSEIVP  229 (345)
T ss_pred             ccchhHHHHHHHHHhCCCCCCCChHHHHHHHhhCCC-ccCCCCCC---CCCcEECccHHHHHHHHHHhcccccccccccc
Confidence            999999999999999999 78 99999999988854 56677765   46899999999999998875321     0   


Q ss_pred             c-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHH
Q psy9394         230 S-LKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMI  308 (339)
Q Consensus       230 ~-~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~ai  308 (339)
                      + ....+.|||++||+++++.|++.++++.++++.++|+++|||+.|+.|+++|.+.++++++++|+||+.+|+|||+||
T Consensus       230 ~~~~~~~~diaasfq~~v~~~L~~k~~~a~~~~~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~~~~ctDNaaMI  309 (345)
T PTZ00340        230 PEEEFFTDDLCFSLQETIFAMLVEVTERAMSHCGSNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMDERYCIDNGAMI  309 (345)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCChHhhhhhHHHH
Confidence            0 023478999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCcc-cccccCCCCCCC
Q psy9394         309 AFAGAMRIENNYKSESNYE-FNIKPQWKINKI  339 (339)
Q Consensus       309 G~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  339 (339)
                      |++++.+++.|.+++  ++ ++++|+|+++++
T Consensus       310 a~~g~~~~~~g~~~~--~~~~~~~~~~~l~~~  339 (345)
T PTZ00340        310 AYAGLLEYLSGGFTP--LKDATVTQRFRTDEV  339 (345)
T ss_pred             HHHHHHHHHcCCCCC--hhhcccccCCcccee
Confidence            999999999998888  55 899999999874

>TIGR03723 bact_gcp putative glycoprotease GCP

Probab=100.00  E-value=2.9e-63  Score=463.57  Aligned_cols=313  Identities=55%  Similarity=0.910  Sum_probs=281.1

Q ss_pred             EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCC
Q psy9394           3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRG   82 (339)
Q Consensus         3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~g   82 (339)
                      ||+||||++++++||++++ ++++++.+.+++++|++|+|++|+.+.++|.+.++++++++|+++|++++|||.|+|+.|
T Consensus         1 iLaIdTs~~~~sval~~~~-~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~G   79 (314)
T TIGR03723         1 ILGIETSCDETAVAIVDDG-KGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAG   79 (314)
T ss_pred             CEEEECcccceEEEEEECC-ceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence            6999999999999999977 348888887777789999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccC-CCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccCC
Q psy9394          83 PGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSN-NSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDD  161 (339)
Q Consensus        83 PG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s-~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~  161 (339)
                      ||+|||+|+|+.+||+|+..+++|+++|+||++|++++++.+ ++ .+|++++++|||++.++...+.+++++++++.+.
T Consensus        80 PGsftglrig~~~Ak~la~~~~~p~~~v~h~~aha~~a~~~s~~~-~~~~lvL~vdgg~s~~~~~~~~~~~~~l~~t~d~  158 (314)
T TIGR03723        80 PGLIGALLVGVSFAKALALALNKPLIGVNHLEGHLLAPFLEDKPL-EFPFLALLVSGGHTQLVLVKGVGDYELLGETLDD  158 (314)
T ss_pred             CChHHhHHHHHHHHHHHHHHhCCCEEecccHHHHHHhhhhccCCC-CCCEEEEEEeCCCcEEEEEecCCeEEEeeccCCc
Confidence            999999999999999999999999999999999999999986 54 4688999999999998888878899999998899


Q ss_pred             cchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHH
Q psy9394         162 AAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARG  241 (339)
Q Consensus       162 s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~  241 (339)
                      |+|.+||+++++||+++++|+++|+||+|+++..+++|.++....+++|+|+++++.+.++++..........+.+||++
T Consensus       159 SlG~~yd~vt~~LG~~~~~g~kvmgLA~~g~~~~~~~~~~~~~~~~~~~sfsg~~~~~~~~~~~~~~~~~~~~~~~iA~~  238 (314)
T TIGR03723       159 AAGEAFDKVARLLGLGYPGGPAIDKLAKEGDPKAFKFPRPMTGRPGLDFSFSGLKTAVLNLIEKLKQKGEELDKADIAAS  238 (314)
T ss_pred             hhhHHHHHHHHHcCCCCCCcHHHHHHHhhCCCCEeECChhhccCCCCCEecccHHHHHHHHHHhcccCccccCHHHHHHH
Confidence            99999999999999999999999999999987545556555433456899999988777776643111112457899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHH
Q psy9394         242 FLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIE  317 (339)
Q Consensus       242 ~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~  317 (339)
                      +|.++++.++++++++.+++++++||++||||+|+.++++|.+.+++.++++|+||..||||||+|||++++.+++
T Consensus       239 ~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~ag~~~~~  314 (314)
T TIGR03723       239 FQAAVVDVLVEKTKRALKKTGLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAAGYERLK  314 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999998889999999999999999999999998764

This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas

>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family

Probab=100.00  E-value=7.2e-63  Score=459.96  Aligned_cols=305  Identities=52%  Similarity=0.857  Sum_probs=272.8

Q ss_pred             EEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCC
Q psy9394           4 LGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGP   83 (339)
Q Consensus         4 Lgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gP   83 (339)
                      ||||||++++++||++++ ++++++.+.++.+.|.+|+|+.|+.+.+.|.+.++++++++|+++|++++|||.|+++.||
T Consensus         1 LaidTs~~~~sval~~~~-~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GP   79 (305)
T TIGR00329         1 LGIETSCDDTGVAIVDEE-GNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGP   79 (305)
T ss_pred             CEEecCccceEEEEEECC-CcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence            699999999999999972 2699998888888899999999999999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccCCcc
Q psy9394          84 GLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAA  163 (339)
Q Consensus        84 G~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~  163 (339)
                      |+|||+|+|+.+||+|+..+++|+++|+||++|++++++.++-..+|++++++|||++.++..++.+++++++++.+.|+
T Consensus        80 G~~tglrvg~~~Ak~la~~~~~p~~~v~hl~~ha~~a~~~s~~~~~~~l~l~vsGG~t~l~~~~~~~~~~~l~~t~d~S~  159 (305)
T TIGR00329        80 GLGGSLRVGATFARSLALSLDKPLIGVNHLLGHIYAPRLDTNILQFPFVSLLVSGGHTQIIAVKGIGDYEVLGETLDDAV  159 (305)
T ss_pred             CchhhHHHHHHHHHHHHHHhCCCEeecccHHHHHHHhhhhcCCCCCCcEEEEEcCCceEEEEEeCCCcEEEeeeecCchh
Confidence            99999999999999999999999999999999999999987722379999999999999999987779999999999999


Q ss_pred             hhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHH
Q psy9394         164 GDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFL  243 (339)
Q Consensus       164 G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q  243 (339)
                      ||+||+++++||+.||||++||++|.++++..++++.++.....++|+|+++++++.+.+.+........++.+||++||
T Consensus       160 GrlfD~va~lLGl~y~g~~~iE~lA~~~~~~~~~~~~~~~~~~~~~~s~sgl~~~~~~~~~~~~~~~~~~~~~~iAasfq  239 (305)
T TIGR00329       160 GEAFDKVARLLGLGYPGGPKIEELAKKGDKLPFYFPLPYTVKPMLDFSFSGLKTAALRKIEKLKKNLNEATKEDIAYSFQ  239 (305)
T ss_pred             hHHHHHHHHHcCCCCCChHHHHHHHhhCCCccccCCCccccCCCCcEEchHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence            99999999999999999999999999887644555555443334579999998877765554211111245799999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHH
Q psy9394         244 DAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIA  309 (339)
Q Consensus       244 ~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG  309 (339)
                      +++++.++++++++.+++++++||++||||+|+.|+++|.+.+++.++++|+||+.||||||+|||
T Consensus       240 ~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~DnGiMIa  305 (305)
T TIGR00329       240 ETAFDHLIEKTKRALKDTGPKELVLVGGVSANKRLREMLETLCQELNVEFYYPPLEFCSDNGAMIA  305 (305)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCccHHhcC
Confidence            999999999999999999999999999999999999999999988899999999999999999986

This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.

>PRK14878 UGMP family protein; Provisional

Probab=100.00  E-value=3e-62  Score=458.70  Aligned_cols=317  Identities=32%  Similarity=0.535  Sum_probs=282.9

Q ss_pred             EEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCC
Q psy9394           4 LGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGP   83 (339)
Q Consensus         4 Lgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gP   83 (339)
                      ||||||++++++||++++  +++++++.++   |.+|+|..|+.+.++|.+.++.+++++|+++|++++|||.|+++.||
T Consensus         1 l~iets~~~~s~al~~~~--~i~~~~~~~~---~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gP   75 (323)
T PRK14878          1 LGIESTAHTLGVGIVKED--KVLANVRDTY---VPEKGGIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGP   75 (323)
T ss_pred             CEEecCCcccEEEEEECC--EEEEEEEEec---ccCcCCcCccHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence            699999999999999977  5888765443   88999999999999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccCCcc
Q psy9394          84 GLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAA  163 (339)
Q Consensus        84 G~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~  163 (339)
                      |++|++|+|..+||+|+..+++|+++|+||++|++++++.+++ ++| +++++|||++.++..+ .+++++++++.+.|+
T Consensus        76 G~~~~lrvg~~~Ak~la~~~~~p~~~v~h~~~Ha~sa~~~s~~-~~~-l~l~vsGg~t~i~~~~-~~~~~~~~~t~d~s~  152 (323)
T PRK14878         76 GLGPALRVGATAARALALKYNKPLVPVNHCIAHIEIGRLTTGA-KDP-VVLYVSGGNTQVLAFR-GGRYRVFGETLDIAI  152 (323)
T ss_pred             CcccchHHHHHHHHHHHHHhCCCccccchHHHHHHhhhhcCCC-CCC-EEEEEEcCCeEEEEEe-CCeEEEeeeecCcch
Confidence            9999999999999999999999999999999999999999987 466 8999999999998887 568999999999999


Q ss_pred             hhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHH
Q psy9394         164 GDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFL  243 (339)
Q Consensus       164 G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q  243 (339)
                      ||+||++|++||+.++|++.+|.+|..+++ .+.+|.++.   +++++|+++++++.+.+.+.      .+..+||++||
T Consensus       153 Gr~fD~vA~~LGl~~~G~~~lE~~a~~~~~-~~~~p~~~~---~~~~~fsgl~~~v~~~i~~~------~~~~diAa~fq  222 (323)
T PRK14878        153 GNALDTFAREVGLAPPGGPAIEKCAEKGEK-YIELPYVVK---GQDLSFSGLLTAALRLYKGK------ERLEDVCYSLR  222 (323)
T ss_pred             hHHHHHHHHHcCCCCCChhHHHHHHhhCCC-cCcCCccCc---CCCCcchHHHHHHHHHHHcC------CCHHHHHHHHH
Confidence            999999999999999999999999876643 233454432   34688999988777666432      45689999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcCCCC
Q psy9394         244 DAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNYKSE  323 (339)
Q Consensus       244 ~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~~~~  323 (339)
                      +++++.++++++++.+++++++||++||||+|+.+++++.+.+++.++++|+||..||||||+|||++++.+++.+.+.+
T Consensus       223 ~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D~GimIA~~g~~~~~~~~~~~  302 (323)
T PRK14878        223 ETAFAMLVEVTERALAHTGKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMIAYTGLLAYKHGVTIP  302 (323)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCchHHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999998889999999999999999999999999888887665


Q ss_pred             CCcccccccCCCCCCC
Q psy9394         324 SNYEFNIKPQWKINKI  339 (339)
Q Consensus       324 ~~~~~~~~~~~~~~~~  339 (339)
                      . .+.++.|+|+++++
T Consensus       303 ~-~~~~~~~~~~~~~~  317 (323)
T PRK14878        303 P-EESFVRQRWRLDEV  317 (323)
T ss_pred             h-hhccccCCCccccc
Confidence            2 34889999999874

>TIGR03722 arch_KAE1 universal archaeal protein Kae1

Probab=100.00  E-value=4.8e-62  Score=457.91  Aligned_cols=318  Identities=32%  Similarity=0.568  Sum_probs=280.0

Q ss_pred             EEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCC
Q psy9394           4 LGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGP   83 (339)
Q Consensus         4 Lgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gP   83 (339)
                      ||||||++++|+||++++ ++|++.++.++   |++|+|..|+.+.+.|.+.++.++++||+++|+++.|||.|+++.||
T Consensus         1 Lgiets~~~~s~al~~~~-~~i~~~~~~~~---~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gP   76 (322)
T TIGR03722         1 LGIEGTAHTFGVGIVDED-GEILANVSDTY---VPEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGP   76 (322)
T ss_pred             CEEeccccceEEEEEECC-CeEEEEEEeec---ccCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence            799999999999999955 36887665443   78899999999999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccCCcc
Q psy9394          84 GLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAA  163 (339)
Q Consensus        84 G~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~  163 (339)
                      |++|++|+|..+||+|+..+++|+++|+||+||++++++.+++ ++| +++++|||++.++..+ .+++++++++.+.|+
T Consensus        77 g~~~~l~vg~~~ak~la~~~~~p~~~v~h~~aHa~sa~~~s~~-~~~-lvL~vsGg~t~l~~~~-~~~~~~l~~t~d~s~  153 (322)
T TIGR03722        77 GLGPCLRVGATAARALALKLNKPLVGVNHCVAHIEIGRLTTGA-KDP-VVLYVSGGNTQVIAYR-NGRYRVFGETLDIGL  153 (322)
T ss_pred             chHHhHHHHHHHHHHHHHHhCCCeechhhHHHHHHhhhccCCC-CCC-eEEEEeCCceEEEEEe-CCeEEEEEEeccccc
Confidence            9999999999999999999999999999999999999999987 467 9999999999998887 468999999989999


Q ss_pred             hhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHH
Q psy9394         164 GDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFL  243 (339)
Q Consensus       164 G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q  243 (339)
                      ||+||++|++||+.++||+++|.+|..++. .+++|+++   .+++++|+++++++.+.+.+.      .++.|||++||
T Consensus       154 GrlfDava~~LGl~~~G~~~le~la~~~~~-~~~~~~~~---~~~~~~fs~l~~~~~~~~~~~------~~~~diAasfq  223 (322)
T TIGR03722       154 GNALDKFAREVGLGHPGGPKIEELAEKGKE-YIELPYTV---KGMDLSFSGLLTAALRAYKKG------ARLEDVCYSLQ  223 (322)
T ss_pred             hHHHHHHHHHhCCCCCChHHHHHHHhcCCC-cccCCccC---CCCcCchHHHHHHHHHHHHcC------CCHHHHHHHHH
Confidence            999999999999998899999999877643 23344433   223578888877666665432      45799999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcCCCC
Q psy9394         244 DAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNYKSE  323 (339)
Q Consensus       244 ~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~~~~  323 (339)
                      +++++.++++++++.+++++++|||+||||+|+.+|++|.+.+++.++++|+||+.||||||+|||++++..++.+...+
T Consensus       224 ~~l~~~l~~~a~~~~~~~g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig~~g~~~~~~~~~~~  303 (322)
T TIGR03722       224 ETAFAMLVEVTERALAHTGKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIAYTGLLMYKHGVTIP  303 (322)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999998889999999999999999999998988877776654


Q ss_pred             CCcccccccCCCCCCC
Q psy9394         324 SNYEFNIKPQWKINKI  339 (339)
Q Consensus       324 ~~~~~~~~~~~~~~~~  339 (339)
                      . .+.++.|+|+++++
T Consensus       304 ~-~~~~~~~~~~~~~~  318 (322)
T TIGR03722       304 V-EESRVRQRWRTDEV  318 (322)
T ss_pred             h-hhccccCCCccccc
Confidence            2 34789999999874

This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=100.00  E-value=2e-60  Score=476.70  Aligned_cols=320  Identities=30%  Similarity=0.521  Sum_probs=285.2

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |+||||||||+++|+||++++ ++++++.+.+   +|++|+|++|+.+.++|.+.++++++++|+++|+++.|||.|||+
T Consensus         1 m~il~iets~~~~s~a~~~~~-~~~~~~~~~~---~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~   76 (535)
T PRK09605          1 MIVLGIEGTAWKTSAGIVDSD-GDVLFNESDP---YKPPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDLVAFS   76 (535)
T ss_pred             CEEEEEEccccceEEEEEeCC-CcEEEEEEee---ccCCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEC
Confidence            999999999999999999964 3688876543   689999999999999999999999999999999999999999999


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccC
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLD  160 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~  160 (339)
                      .|||++|+||+|+.+||+|+..+++|+++|+||+||++++++.+++ ++| +++++|||++.++..++ +++++++++.+
T Consensus        77 ~gPg~~~~l~vg~~~ak~la~~~~~~~~~v~h~~aH~~~a~~~~~~-~~~-l~l~vsGg~t~~~~~~~-~~~~~l~~t~d  153 (535)
T PRK09605         77 QGPGLGPCLRVVATAARALALSLDVPLIGVNHCVAHVEIGRLTTGA-EDP-VTLYVSGGNTQVLAYLN-GRYRVFGETLD  153 (535)
T ss_pred             CCCCcHhhHHHHHHHHHHHHHHhCCCeecccHHHHHHHHhhhccCC-CCC-eEEEEecCCeEEEEEcC-CeEEEEEeecc
Confidence            9999999999999999999999999999999999999999999887 467 99999999999998887 78999999999


Q ss_pred             CcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHH
Q psy9394         161 DAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR  240 (339)
Q Consensus       161 ~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa  240 (339)
                      .|+|++||++|++||+.++|++++|++|.++++ .+.+|.++   ..++|+|+++.+++.+.+.+.      .+..+||+
T Consensus       154 ~S~G~~fD~va~~Lg~~~~g~~~le~lA~~~~~-~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~------~~~~~iA~  223 (535)
T PRK09605        154 IGVGNALDKFARHVGLPHPGGPKIEKLAKDGKK-YIDLPYVV---KGMDFSFSGLLTAAKRAYDAG------EPLEDVCY  223 (535)
T ss_pred             hhhhHHHHHHHHHhCCCCCCCHHHHHHHhcCCC-cccCCCcC---CCCCEeehHHHHHHHHHHHcC------CCHHHHHH
Confidence            999999999999999999999999999998865 33445443   234688999977766655432      35689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       241 ~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      +||+++++.++++++++.+++|+++||++||||+|+.++++|.+++++.++++|+||+.||||||+|||++++.++..+.
T Consensus       224 ~~q~~l~~~l~~~~~~~~~~~g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g~  303 (535)
T PRK09605        224 SLQETAFAMLTEVTERALAHTGKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAGD  303 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999988889999999999999999999999998887776


Q ss_pred             CCCCCcccccccCCCCCC
Q psy9394         321 KSESNYEFNIKPQWKINK  338 (339)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~  338 (339)
                      ..+. .+....|+|+.++
T Consensus       304 ~~~~-~~~~~~p~~~~~e  320 (535)
T PRK09605        304 TLDI-EDTRVNPNFRTDE  320 (535)
T ss_pred             CCCc-ccccccCCCcccc
Confidence            4442 3577888888764

>KOG2707|consensus

Probab=100.00  E-value=1.4e-57  Score=410.39  Aligned_cols=336  Identities=37%  Similarity=0.594  Sum_probs=301.8

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      ++|||+|||+|+++|+++.- ++++++++.+|..+|.+|||+.|..+...|.+.+..+++++|+++|.+++|+|+|||+.
T Consensus        33 ~VLgIETSCDDTavaVVd~~-~~~~~~~i~~~t~~~~~yGGI~P~~a~~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~  111 (405)
T KOG2707|consen   33 KVLGIETSCDDTAVAVVDEF-SHVLSSEIYSRTEIHRQYGGIIPTVAQLLHRENIPRLIQRALDAAGLSPKDLDAIAVTR  111 (405)
T ss_pred             eeeeEecccCcceeeeeccc-ccccchhhhhhhHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHcCCCcccceeEEEec
Confidence            38999999999999999876 67999988888889999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccCC
Q psy9394          82 GPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDD  161 (339)
Q Consensus        82 gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~  161 (339)
                      |||.--+|++|+++|+++|..+++|+++|.|++|||++++.+.+..+||+++++++|||+.+....+.+++++++++.|.
T Consensus       112 gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~~v~FPFl~lLvSGGH~llvla~~~~~~~llg~TvDi  191 (405)
T KOG2707|consen  112 GPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDDSVRFPFLALLVSGGHTLLVLANGVGDHELLGQTVDI  191 (405)
T ss_pred             CCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccCCcCCceeeEeeeCCceEEEEeccccceeeeeccccc
Confidence            99999999999999999999999999999999999999999875557999999999999999999999999999999999


Q ss_pred             cchhhhHHHHhHcCCC------CCcHHHHHhccccCCC-CcccCCCccccCCCeeeecchHHHHHHHHHHhhcc-ccccc
Q psy9394         162 AAGDTFDKIAKMLDLG------YPGGPEISLISEFGDP-NIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKL-DSLKK  233 (339)
Q Consensus       162 s~G~~~d~va~~LG~~------~~gg~~le~lA~~g~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~  233 (339)
                      +.|+.+|++++.||+.      +++|+++|.+|..++. ..+++|.|+....+|+|+|+++++...+++.+... ++...
T Consensus       192 ApGe~lDK~ar~Lgl~~~~e~~~~~g~aie~la~~~s~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s  271 (405)
T KOG2707|consen  192 APGEALDKCARRLGLLGHPEDARSGGKAIEHLANRASADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLS  271 (405)
T ss_pred             chHHHHHHHHHHhcCCCCccchhhhhhHHHHHHhccCccccccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchh
Confidence            9999999999999994      3478899999987764 46778888888888999999999999988876532 22345


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHH
Q psy9394         234 EKANIARGFLDAIIDVLTFKCIAALKNTG-----INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMI  308 (339)
Q Consensus       234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~-----~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~ai  308 (339)
                      ...||||++|+++++++.+.+.++.+...     .+.+|++||||.|.+++.+|.....+.+...+.||+..|.|||+||
T Consensus       272 ~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~Pp~~lCsDNgiMI  351 (405)
T KOG2707|consen  272 EIADFAASLQRTVFRHISSKTHRAIKSLLLQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSIKPPPSLCSDNGIMI  351 (405)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEcCCccchHHHHHHHHHHHHhhCCccccCChhhcCCcchhh
Confidence            78999999999999999999999887753     4689999999999999999999888888888889888999999999


Q ss_pred             HHHHHHHHHhcC-CCC-CC-cccccccCCCCCC
Q psy9394         309 AFAGAMRIENNY-KSE-SN-YEFNIKPQWKINK  338 (339)
Q Consensus       309 G~a~~~~~~~~~-~~~-~~-~~~~~~~~~~~~~  338 (339)
                      ||.+.+++++|. .+. ++ ..+..+|+|++.+
T Consensus       352 aw~Gie~l~~~r~~~~~~D~~~ir~~p~~~l~~  384 (405)
T KOG2707|consen  352 AWTGIEMLRNGRELTSIPDIEPIRARPDNGLLE  384 (405)
T ss_pred             hhHHHHHHhccccCCCccccchhhccCCCCccc
Confidence            999999999996 333 32 3478889998875

>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=1.5e-47  Score=350.41  Aligned_cols=268  Identities=49%  Similarity=0.811  Sum_probs=227.8

Q ss_pred             ceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCCchhHHHHHHHHHHHHhc
Q psy9394          24 NLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSI  103 (339)
Q Consensus        24 ~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~t~lr~g~~~ak~la~~~  103 (339)
                      +|+++.+.+|.++|.+|||++|+.+.++|.+.++++++++|++++++++|||.|+|+.|||+|||+|+|+++||+|+..+
T Consensus         1 ~vl~~~~~sq~~~~~~~gGv~P~~a~r~H~~~L~~~i~~~l~~~~~~~~did~iavt~GPGsftgLrvG~~~Ak~La~~~   80 (268)
T PF00814_consen    1 KVLSNVIASQIEIHAQYGGVVPEIASRQHSENLPPLIEELLKEAGISLSDIDAIAVTRGPGSFTGLRVGLSFAKGLALAL   80 (268)
T ss_dssp             -EEEEEEEE--E---TTSSSSHCCHHHHHHHHHHHHHHHHHHHHTS-GGGESEEEEEEESS-HHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEEeeccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence            47888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccCCcchhhhHHHHhHcCCCCCcHHH
Q psy9394         104 NKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPE  183 (339)
Q Consensus       104 ~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~G~~~d~va~~LG~~~~gg~~  183 (339)
                      ++|+++|+|+++|+++++..++. ++| +++++||++++++...+ +.++.++.+.+.+.|..+|+++++||+.++++++
T Consensus        81 ~~Pli~v~~l~a~a~~~~~~~~~-~~P-~~~~isa~~~~vy~~~~-~~~~~~~~t~d~~~ge~~dk~~~~l~l~~~~g~~  157 (268)
T PF00814_consen   81 NIPLIGVSHLEAHALSARLSEGL-KFP-LVLLISAGHTEVYLAEG-GDYEILGETLDDAIGEAFDKVARLLGLPYPGGPA  157 (268)
T ss_dssp             T--EEEEEHHHHHHHHHHHHHTE-ESE-EEEEEECSTCEEEEEET-TEEEEECCBSSSCHHHHHHHHHHHTT--SSHHHH
T ss_pred             CCCeEeeccHHHHHHhHhhhccc-cCc-eEEEEECCCccEEEEEe-eEEEeeccccccccHHHHhhHHHHhccccccCcH
Confidence            99999999999999999866442 368 99999999999999987 8899999999999999999999999999999999


Q ss_pred             HHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy9394         184 ISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGI  263 (339)
Q Consensus       184 le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~  263 (339)
                      +|.+|..+  ..+++|.++.   +++|+|+|+++++.+.++        .  .+||+++|+++.+.+.+.+.++.+..+.
T Consensus       158 le~la~~~--~~~~~p~~~~---~~~~sFsG~~t~~~~~i~--------~--~~iA~s~q~~~~~~l~~~~~~a~~~~~~  222 (268)
T PF00814_consen  158 LEKLASEG--EAFKFPRPLK---NCDFSFSGLKTAVYRLIE--------K--ADIAASFQEAIADHLAKKAPRALEKPRA  222 (268)
T ss_dssp             HHHHHCT---S------SEE---TTEEEEHHHHHHHHHHHH--------T--HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhC--Ccceecccee---eeeEEEEcccHHHHHHhh--------h--hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999887  3566776653   378999999988877764        1  9999999999999999999999999999


Q ss_pred             CeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394         264 NKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF  310 (339)
Q Consensus       264 ~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~  310 (339)
                      +.|+++|||+.|+.+++.+.+...+ ++++++||+.+|.||++||||
T Consensus       223 ~~lv~~GGVaaN~~lr~~l~~~~~~-~~~~~~p~~~y~~Dnaamiaw  268 (268)
T PF00814_consen  223 KSLVVSGGVAANKYLREGLRKLCSE-GIKLFFPPPRYCTDNAAMIAW  268 (268)
T ss_dssp             SEEEEESGGGGHHHHHHHHHHHHHH-TSEEE---HHHCSS-HHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHc-CCEEEcCCHHHcchhHHHhCc
Confidence            9999999999999999999998888 899999998899999999997

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....

>KOG2708|consensus

Probab=100.00  E-value=9e-45  Score=310.54  Aligned_cols=327  Identities=27%  Similarity=0.472  Sum_probs=293.6

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |+.||++.|.+...+.++.++  ++++..|.+.+  .+|-.|.+|....++|...+..+++..|++++++.+|||.|+++
T Consensus         2 ~ialG~EGSANKlGvGiv~~~--~iLaN~R~TYi--tPPG~GFlP~~TA~HHr~~il~Lv~~al~ea~v~~~diD~icyT   77 (336)
T KOG2708|consen    2 MIALGLEGSANKLGVGIVRDG--KILANPRHTYI--TPPGEGFLPRDTARHHRAWILGLVKQALEEAGVTSDDIDCICYT   77 (336)
T ss_pred             ceEEecccccccceeeEEecc--eeecCcccccc--CCCCCCCCcchhHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEc
Confidence            678999999999999999999  79999887764  35556999999999999999999999999999999999999999


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccC
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLD  160 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~  160 (339)
                      .|||....|-+....|+.++.-|++|+++|+|..+|+...+.-.+- +.| +++.++||.++++...+ .++++++.+.+
T Consensus        78 KGPGmgaPL~~vaivaRtlsllw~kPlv~VNHCigHIEMGR~iTgA-~nP-vvLYvSGGNTQvIAYse-~rYrIFGETlD  154 (336)
T KOG2708|consen   78 KGPGMGAPLSVVAIVARTLSLLWNKPLVGVNHCIGHIEMGREITGA-QNP-VVLYVSGGNTQVIAYSE-KRYRIFGETLD  154 (336)
T ss_pred             CCCCCCCchhhHHHHHHHHHHHhCCCcccchhhhhhhhhcceeccC-CCC-EEEEEeCCceEEEEEcc-ceeeeecceeh
Confidence            9999988899988899999999999999999999999998876653 356 78899999999998875 79999999999


Q ss_pred             CcchhhhHHHHhHcCCCCC--cHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHH
Q psy9394         161 DAAGDTFDKIAKMLDLGYP--GGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANI  238 (339)
Q Consensus       161 ~s~G~~~d~va~~LG~~~~--gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~di  238 (339)
                      .++|..+|.+|+.|.++.+  .|+.+|++|..|+. ..++|+.   +++++.+|+++.+.+..+.++..+...+..++|+
T Consensus       155 IAvGNClDRFAR~lklsN~PsPGynieq~AK~gk~-~ieLPY~---VKGMDvSfSGiLs~ie~~a~~~~~~~~~~t~~DL  230 (336)
T KOG2708|consen  155 IAVGNCLDRFARVLKLSNDPSPGYNIEQLAKKGKN-YIELPYT---VKGMDVSFSGILSYIEDLAEELLKPSSEVTKEDL  230 (336)
T ss_pred             hhhhhhHHHHHHHhcCCCCCCCCcCHHHHHHhccc-eeeccee---eeccccchHHHHHHHHHHHhhhhcccccccHHHH
Confidence            9999999999999999743  47789999999875 5677875   3577899999988877777665333345689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHh
Q psy9394         239 ARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIEN  318 (339)
Q Consensus       239 Aa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~  318 (339)
                      ++|+|++++.+++++.+|+....+.+.|.+.|||.+|..|.+++..+.+++|-++|-.+..+|-|||+||+|+++.++++
T Consensus       231 CySLQEtvFamLVEiTERAMAh~~s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~MIA~aG~l~~~~  310 (336)
T KOG2708|consen  231 CYSLQETVFAMLVEITERAMAHCGSKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGVMIAQAGLLMFRS  310 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCchHHHHhHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcccccccCCCCCCC
Q psy9394         319 NYKSESNYEFNIKPQWKINKI  339 (339)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~  339 (339)
                      |..+|+ -+.++.+|+++||.
T Consensus       311 G~~~~~-~es~vTQr~RTDeV  330 (336)
T KOG2708|consen  311 GARTPL-SESTVTQRYRTDEV  330 (336)
T ss_pred             CCcccc-ccceeeeeeeccce
Confidence            999996 68999999999974

>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.7e-38  Score=300.32  Aligned_cols=294  Identities=18%  Similarity=0.192  Sum_probs=211.9

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeE---EEEeeecccccccCCccchHHHHHHHHHHH-HHHHHHHHhCCCCCCCcCE
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRS---HVICSQNLVHKEYGGVVPELAARTHIQTII-PLLSKLLKNSNLELKKIDI   76 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~---~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~-~~i~~~l~~~~i~~~did~   76 (339)
                      |+||||..+.||.++||++||  +|++   +||++|                +||...+| ..+++||+.+++.+.|||.
T Consensus         1 m~ILGis~~~HD~aaaLv~Dg--~iVaAv~EERftR----------------~K~~~~fP~~sv~~~L~~~~~~~~dVD~   62 (555)
T COG2192           1 MYILGISDGYHDAAAALVRDG--EIVAAVEEERFTR----------------KKHDAGFPEQSVDYCLRLAGIELTDVDA   62 (555)
T ss_pred             CEEEEeccCCCCcceEEEeCC--eEEEEehhhhhch----------------hccccCCchHHHHHHHhhccCCcccccE
Confidence            899999998899999999988  6887   467776                45555555 6899999999999999999


Q ss_pred             EEEeCCCCCCchhHHHHH-----------------HHHHHH-------HhcCCCEEeecchhHHhhhccccCCCCCCcEE
Q psy9394          77 IAYTRGPGLPGSLLVGSS-----------------IACSIA-------LSINKPVIGINHLEGHLLSPFLSNNSLTFPFI  132 (339)
Q Consensus        77 ia~~~gPG~~t~lr~g~~-----------------~ak~la-------~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~  132 (339)
                      |++..-|+.. --|+...                 +.+..+       ..+..++..+.||.|||+|++++|||.  +++
T Consensus        63 va~~~~~~~~-~~r~~~~yl~~~~~~~~~~~~k~~l~~~~~~l~~~~~~~~~~kv~~~eHH~aHAasAf~~SpF~--~a~  139 (555)
T COG2192          63 VAVAGKPSAK-FRRILAGYLKRKPELFGKLLLKKLLKRLLAELDQFFGKGLPVKVLFVEHHLAHAASAFFTSPFE--EAL  139 (555)
T ss_pred             EEEcCCcHHH-HHHHHHHHhhhccccccchhhHHHHHHHHHHhhhhccccCccceeechHHHHHHHHHhcCCCcc--cce
Confidence            9998656421 1121111                 111111       234567899999999999999999994  588


Q ss_pred             EEEEeCC---eeEEEEecCCcceEEeee-ccCCcchhhhHHHHhHcCCC-CCcHHHHHhccccCCCCcccCCC--ccccC
Q psy9394         133 ALLVSGG---HTQLIKVNSIGNYFLLGE-TLDDAAGDTFDKIAKMLDLG-YPGGPEISLISEFGDPNIYKFPR--PMLYT  205 (339)
Q Consensus       133 ~l~~dGg---~~~~~~~~~~~~~~~~~~-~~~~s~G~~~d~va~~LG~~-~~gg~~le~lA~~g~~~~~~~~~--~l~~~  205 (339)
                      ++++||.   .+..+.....+++..+.+ ...+|+|.||.++|.+|||+ .+++.++|+||+||++. |....  .+...
T Consensus       140 vl~iDg~Gd~~s~~~~~~~~~~~~~i~~~~~~~SLG~fY~~~T~~lGf~~n~~EgKvMgLAaYG~p~-y~~~~~d~l~~~  218 (555)
T COG2192         140 VLTIDGAGDGLSTSVWHGRNGQLTPIAQSRGIDSLGLFYAAFTELLGFKPNSDEGKVMGLAAYGDPN-YDLSLLDLLREK  218 (555)
T ss_pred             EEEEeccCCceEEEEEeccCCeeEEEEeecCcchHHHHHHHHHHHhCCCCCCCCccEEEeeccCCcc-cchHHHHHHhhc
Confidence            9999984   233333333366666654 45779999999999999997 56788999999999985 32110  01110


Q ss_pred             CCe--eeecchHH--HH--HHHHHHh---h-ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhh
Q psy9394         206 NNF--NFSFSGLK--TS--VLNVIKN---I-KLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGAN  275 (339)
Q Consensus       206 ~~~--~~~~~~l~--~~--~~~~~~~---~-~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N  275 (339)
                      .+.  .+...-.+  ..  ..+++..   . ......+.+.|||+++|..+++.+.++.+.+.+++++.+||++||||+|
T Consensus       219 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g~~~L~~AGGVAlN  298 (555)
T COG2192         219 EDGLFVINGELLKRLARLGTFSLLGALKRRLPESPSTERAADIAASAQAYLEELVLEMLRYLREETGEDNLALAGGVALN  298 (555)
T ss_pred             cccceeccHHHHHhccccceeccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceEEccceeee
Confidence            000  11100000  00  0001111   0 0123466889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCc-EEEccCCCCCChhHHHHHHHHHHHHHhcCC
Q psy9394         276 KQLRKKLNILKKQYNY-TVFYPKKEFCTDNGAMIAFAGAMRIENNYK  321 (339)
Q Consensus       276 ~~l~~~l~~~l~~~~~-~v~~~~~~~~~D~G~aiG~a~~~~~~~~~~  321 (339)
                      |++|.++.+.   ..+ +|||||  ++||+|.|+|+|++.+.+.+..
T Consensus       299 v~~N~~~l~~---~~f~dlfV~P--a~gD~G~AvGAAl~~~~~~~~~  340 (555)
T COG2192         299 VKANGKLLRR---GLFEDLFVQP--AMGDAGLAVGAALAVKRELGGA  340 (555)
T ss_pred             eeehHhHhhc---ccCceeEecC--CCCCcchHHHHHHHHHHHhcCC
Confidence            9999777664   234 899999  8999999999999987776653

>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF

Probab=100.00  E-value=3.1e-35  Score=298.85  Aligned_cols=253  Identities=18%  Similarity=0.220  Sum_probs=199.1

Q ss_pred             ccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHH
Q psy9394          37 HKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGH  116 (339)
Q Consensus        37 ~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aH  116 (339)
                      -++|+||+.+..+.++++.....+..+++   +   +++.|+||.||+|+|.         .++..+++|++.||||+||
T Consensus       385 ~S~~iGDl~~~~~~~~~~~~~~~~~~l~~---~---~p~~i~~D~HP~y~st---------~~a~~~~~~~~~vQHH~AH  449 (711)
T TIGR00143       385 LSQHIGDLSVYETYKFFKEALNFFLRIYD---F---EPQDIVCDLHPQYNTT---------QYAEELSLPVLRVQHHHAH  449 (711)
T ss_pred             EcCcccCcCCHHHHHHHHHHHHHHHHHHC---C---CCCEEEEeCCCCchhH---------HHHHHcCCCeeeeeHHHHH
Confidence            35799999999999888888878877777   6   7999999999999853         3566679999999999999


Q ss_pred             hhhccccCCCCCCcEEEEEEeCC---------eeEEEEecCC---------------------------------cc---
Q psy9394         117 LLSPFLSNNSLTFPFIALLVSGG---------HTQLIKVNSI---------------------------------GN---  151 (339)
Q Consensus       117 a~s~~~~s~~~~~~~~~l~~dGg---------~~~~~~~~~~---------------------------------~~---  151 (339)
                      +++++.+++..+.|+++++|||.         ..+++..+..                                 .+   
T Consensus       450 ~~a~mae~~l~~~~~lg~~~DGtGyG~Dg~iWGGE~l~~~~~~~~R~~hl~~~~l~GGd~a~~~p~R~a~~~l~~~~~~~  529 (711)
T TIGR00143       450 ALAVMADAGVLEEAVIGITWDGVGYGEDGKIWGGECLLIDLGRIERLGRLEEFWLLGGDLATKYPLRILLSILLKHDLND  529 (711)
T ss_pred             HHHHHHhcCCCcCCeEEEEEeCCccCCCCCeeeeEEEEEeCCceEEEeccccccCCChhHHHHHHHHHHHHHHHhCcccc
Confidence            99999999751359999999972         1233332210                                 00   


Q ss_pred             ----eEE------------------eeeccCCcchhhhHHHHhHcCC----CCCcHHHH--HhccccCCCCcccCCCccc
Q psy9394         152 ----YFL------------------LGETLDDAAGDTFDKIAKMLDL----GYPGGPEI--SLISEFGDPNIYKFPRPML  203 (339)
Q Consensus       152 ----~~~------------------~~~~~~~s~G~~~d~va~~LG~----~~~gg~~l--e~lA~~g~~~~~~~~~~l~  203 (339)
                          ++.                  ++.+.++|+|||||++|++||+    +|||++.|  |.+|...... +.+|+.+.
T Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~tSS~GRlFDaVAalLGl~~~~syEGqAa~~LE~lA~~s~~~-v~~~~~i~  608 (711)
T TIGR00143       530 FLKRYQKYFKQEKELSVLQQALEKKINAPLTTSTGRLFDAVAAALGLCGERTYEGEAAIALEALALRSDGI-ANYPFEIK  608 (711)
T ss_pred             cchhhhhcCcchHHHHHHHHHHHhCCCCcccCCCCcHHHHHHHHcCCCcccccchhhHHHHHHHHhcCCCc-cccCcccc
Confidence                000                  1235689999999999999999    46776655  7777544321 12344432


Q ss_pred             cCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHH
Q psy9394         204 YTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLN  283 (339)
Q Consensus       204 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~  283 (339)
                         +.+++++++..++.+.+.+.      .++.+||++||+++++.++++++++.++++.++|+|+||||+|+.|++.|.
T Consensus       609 ---~~~id~~~l~~~ii~~l~~g------~~~~~IAa~fh~tla~~L~~~a~~~~~~~g~~~VvLSGGVfqN~~L~~~L~  679 (711)
T TIGR00143       609 ---NKVLDLKEFYQRFLEDLLVG------EDRSKIAHIAHKFVASGLVEIATAIAVPFGIHKIVISGGVFYNRLLLERLA  679 (711)
T ss_pred             ---CCccCHHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccHHHHHHHHHHHH
Confidence               22578888866666555433      578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCcEEEccCCCCCChhHHHHHHHHHH
Q psy9394         284 ILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM  314 (339)
Q Consensus       284 ~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~  314 (339)
                      +.+++.|+++|+|++.||||||+|+||+.+.
T Consensus       680 ~~L~~~g~~v~~p~~~p~nDgGislGQa~~a  710 (711)
T TIGR00143       680 KYLKGLGFQFLFHRHLPPGDGGISLGQAVAA  710 (711)
T ss_pred             HHHHhCCCEEEccCCCCCCHHHHHHHHHHHh
Confidence            9998889999999999999999999998764

A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.

>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-32  Score=268.47  Aligned_cols=267  Identities=20%  Similarity=0.323  Sum_probs=199.0

Q ss_pred             ceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCCchhHH
Q psy9394          12 DSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLV   91 (339)
Q Consensus        12 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~t~lr~   91 (339)
                      +..+||.+.+  +.+          -++|+||+.+....++++.....+.++++   +   +.|.|+||.||.|.|.   
T Consensus       407 knTf~l~k~~--~~~----------lSQ~iGdls~~~t~~~~~ea~~~~~~~~~---~---~pd~i~cDlHP~y~tt---  465 (750)
T COG0068         407 KNTFCLLKGG--KAY----------LSQHIGDLSNLETLEFFREALRHFLKIYD---F---EPDYIVCDLHPNYNTT---  465 (750)
T ss_pred             cceEEEEECC--eEe----------eccccCcchhhhHHHHHHHHHHHHHHHhc---C---CCceEEEecCcccchh---
Confidence            3456777766  332          24589999998777666655555554444   7   4499999999999863   


Q ss_pred             HHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCC-CCcEEEEEEeCC----e-----eEEEEecC-------------
Q psy9394          92 GSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSL-TFPFIALLVSGG----H-----TQLIKVNS-------------  148 (339)
Q Consensus        92 g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~-~~~~~~l~~dGg----~-----~~~~~~~~-------------  148 (339)
                            .+|..++.|++.||||+||+++++.+++.+ .++++++.+||-    +     .+++..+.             
T Consensus       466 ------~~A~e~~~~~~~VqHH~AH~~a~mae~~~~~~~~vi~ia~DG~GyG~dGk~WGGE~l~~d~~~~erlahl~~~~  539 (750)
T COG0068         466 ------KYAEEFALPLLQVQHHHAHALAVMAEHGLPLDEKVIGIALDGVGYGEDGKVWGGEFLVIDYKEYERLAHLEYVD  539 (750)
T ss_pred             ------hHHHhhcccceeehhhHHHHHHHHhccCCCCCCceEEEEecCccccccCceecceEEeeccHhhhhhccCcccc
Confidence                  355555689999999999999999998742 247999999972    1     22222210             


Q ss_pred             --Ccc---------------------------------eEE--------eeeccCCcchhhhHHHHhHcCC----CCCcH
Q psy9394         149 --IGN---------------------------------YFL--------LGETLDDAAGDTFDKIAKMLDL----GYPGG  181 (339)
Q Consensus       149 --~~~---------------------------------~~~--------~~~~~~~s~G~~~d~va~~LG~----~~~gg  181 (339)
                        .++                                 +.+        ++.+.++|+||+||++|.+||+    +||||
T Consensus       540 L~GGd~Aik~P~R~~ls~l~~~~~~~~k~~~~~~~e~~~~~l~~~~e~gin~p~tSS~GRlfDAvaalLgi~~~~tYEGE  619 (750)
T COG0068         540 LPGGDLAIKYPLRMALSILLRFFLKLIKNYNEKYGELELKVLAQALEKGINAPLTSSIGRVFDAVAALLGICETRTYEGE  619 (750)
T ss_pred             cCCCchhhhchHHHHHHHHHHhhhHHHHhhchhhhhhhHHHHHHHHHhccCccccccccHHHHHHHHHhhhhceeeeccc
Confidence              000                                 000        1346789999999999999999    68998


Q ss_pred             HHH--HhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9394         182 PEI--SLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALK  259 (339)
Q Consensus       182 ~~l--e~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~  259 (339)
                      ++|  |.+|......  .+|+++..+++.+++++.+   +..+++..    ....+.+||+.||.++++.+.+++..+.+
T Consensus       620 ~A~~LEa~a~~~~~~--~~~~~~~~~~~~vld~~~~---~~~~l~~~----~~~~~~~iA~~fh~~la~~~~e~~~~~a~  690 (750)
T COG0068         620 AAMALEALADQSDGV--DYPYEIKNEDNQVLDLKEL---ILGVLEDL----LKDEPEKIATKFHNALAEGFAELAVELAK  690 (750)
T ss_pred             hhhhHHHHhhhcccC--cccceeccCCccEeeHHHH---HHHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877  7777653222  2354443322223554444   45555432    13678999999999999999999999999


Q ss_pred             HhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHH
Q psy9394         260 NTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM  314 (339)
Q Consensus       260 ~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~  314 (339)
                      ++|++.|++|||||+|+.+.+.+.+.+++.|++++.|...|+||+|+++||+...
T Consensus       691 ~~gi~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~~DggIslGQ~v~~  745 (750)
T COG0068         691 KYGINKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPAGDGGISLGQAVAA  745 (750)
T ss_pred             hcCccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCCCCCceeHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999876

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=99.92  E-value=1.5e-23  Score=190.81  Aligned_cols=251  Identities=14%  Similarity=0.152  Sum_probs=177.8

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |+.+|||.++.+++++|++++  +++.......        |.       ...+...+.++.++++.|++..|++.+++|
T Consensus        32 m~~~GIDiGStt~K~Vlld~~--~i~~~~~~~t--------g~-------~~~~~a~~~l~~~l~~~g~~~~~v~~~~~T   94 (293)
T TIGR03192        32 IITCGIDVGSVSSQAVLVCDG--ELYGYNSMRT--------GN-------NSPDSAKNALQGIMDKIGMKLEDINYVVGT   94 (293)
T ss_pred             cEEEEEEeCchhEEEEEEeCC--EEEEEEeecC--------CC-------CHHHHHHHHHHHHHHHcCCcccceEEEEEE
Confidence            889999999999999999977  6765433211        11       122445678889999999988889988765


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEE--eeec
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFL--LGET  158 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~--~~~~  158 (339)
                       |.|.     ..+.++       +   ..++++.||+.++.+..|-  .--.++.+.|.+++++.+.+++++..  +++.
T Consensus        95 -GyGr-----~~~~~a-------~---~~v~EItaha~Ga~~~~pp--~v~tIIDIGGQDsK~I~~d~~G~v~dF~MNdk  156 (293)
T TIGR03192        95 -GYGR-----VNVPFA-------H---KAITEIACHARGANYMGGN--AVRTILDMGGQDCKAIHCDEKGKVTNFLMNDK  156 (293)
T ss_pred             -Ccch-----hhcchh-------h---cceeeHHHHHHHHHHhcCC--CCCEEEEeCCCceEEEEEcCCCcEeeeeecCc
Confidence             6662     212111       1   1478999999999887530  11245555677999999866565443  4678


Q ss_pred             cCCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCe-eeecchHHHHHHHHHHhhccccccccHHH
Q psy9394         159 LDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNF-NFSFSGLKTSVLNVIKNIKLDSLKKEKAN  237 (339)
Q Consensus       159 ~~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~d  237 (339)
                      |+..+|+|+|.+++.||++.+   ++..+|......    |.++.  +.| +|.    +|++.++++++      .+++|
T Consensus       157 CAAGTGrFLE~~A~~Lgi~le---el~~~a~~~~~~----p~~Is--s~CtVFA----eSevi~l~~~G------~~~ed  217 (293)
T TIGR03192       157 CAAGTGRGMEVISDLMQIPIA---DLGPRSFDVETE----PEAVS--SICVVFA----KSEALGLLKAG------YTKNM  217 (293)
T ss_pred             ccccccHHHHHHHHHcCCCHH---HHHHHHHhcCCC----CCCcC--CcceEec----cHhHHHHHHCC------CCHHH
Confidence            999999999999999999865   454455232211    34443  467 664    88899999876      79999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEE-ccCCCCCChhHHHHHHHHHH
Q psy9394         238 IARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVF-YPKKEFCTDNGAMIAFAGAM  314 (339)
Q Consensus       238 iAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~-~~~~~~~~D~G~aiG~a~~~  314 (339)
                      |++++++++++.+..++++..   -.++|+|+|||+.|..+.+.+.+.|   +.+++ +|+.  +. ---|+|+|.+.
T Consensus       218 I~aGl~~sia~rv~~~~~~~~---i~~~v~~~GGva~N~~l~~al~~~L---g~~v~~~p~~--p~-~~GAlGAAL~A  286 (293)
T TIGR03192       218 VIAAYCQAMAERVVSLLERIG---VEEGFFITGGIAKNPGVVKRIERIL---GIKAVDTKID--SQ-IAGALGAALFG  286 (293)
T ss_pred             HHHHHHHHHHHHHHHHhcccC---CCCCEEEECcccccHHHHHHHHHHh---CCCceeCCCC--cc-HHHHHHHHHHH
Confidence            999999999999988877541   2358999999999999999999987   56666 3431  11 12345666655

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []

Probab=99.92  E-value=6.8e-24  Score=201.30  Aligned_cols=197  Identities=18%  Similarity=0.209  Sum_probs=122.7

Q ss_pred             hhccccCCCCCCcE-EEEEEeCCe----eEEEEecCCcceEEee-eccC---CcchhhhHHHHhHcCCCC-CcHHHHHhc
Q psy9394         118 LSPFLSNNSLTFPF-IALLVSGGH----TQLIKVNSIGNYFLLG-ETLD---DAAGDTFDKIAKMLDLGY-PGGPEISLI  187 (339)
Q Consensus       118 ~s~~~~s~~~~~~~-~~l~~dGg~----~~~~~~~~~~~~~~~~-~~~~---~s~G~~~d~va~~LG~~~-~gg~~le~l  187 (339)
                      +|+++.|+|.  .. +++++||+.    +.++... .++++.+. ...+   .|+|.||.+++.+||+.. +++.++|+|
T Consensus         1 aSaf~~S~F~--~a~~vlv~DG~Gd~~s~~~~~~~-~~~~~~~~~~~~~~s~~slG~~Y~~~T~~lGf~~~~~egKvMGL   77 (360)
T PF02543_consen    1 ASAFYPSPFD--EACAVLVIDGGGDGESTSIYHAR-GGEIERIRESSYPHSGNSLGYFYEAITEYLGFKPNSDEGKVMGL   77 (360)
T ss_dssp             HHHHTTTS-S--EE-EEEEESS-SSSEEEEEEEEE-TTEEEE--EEEEEGG-G-HHHHHHHHHHHTTS-TT--HHHHHHH
T ss_pred             CcccCcCCCC--cCeEEEEEECCCCCcceEEEEec-CCEEEEeeeecCCchHHHHHHHHHHHHHhcCCCCCCcccceeee
Confidence            4788999984  56 899999852    3344443 45666542 2233   459999999999999964 478899999


Q ss_pred             cccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhh-------c----cccccccHHHHHHHHHHHHHHHHHHHHHH
Q psy9394         188 SEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNI-------K----LDSLKKEKANIARGFLDAIIDVLTFKCIA  256 (339)
Q Consensus       188 A~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~-------~----~~~~~~~~~diAa~~q~~l~~~l~~~~~~  256 (339)
                      |+||++... +.-.+...........-............       .    .....+.+.|+|+++|..+|+.+++++++
T Consensus        78 A~YG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlAa~~Q~~~E~~v~~~~~~  156 (360)
T PF02543_consen   78 AAYGKPPDR-FDELLEELFSLNFDGDFDFRQKIPFLSTSLLRFIDFFARSPEEPLTQRHADLAASAQKVLEEIVLHLVRH  156 (360)
T ss_dssp             HTTS--S-T-TTTTEEEETTEEEETTSHHHHHHHHHSSS----EEEETTTCEEEEESS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCchH-HHHHHHHHhccccCCCeeeeccccccccchhhhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            999954211 11111100011111000001111111110       0    01124678999999999999999999999


Q ss_pred             HHHHhCCCe-EEEEcchhhhHHHHHHHHHHHHhCCc-EEEccCCCCCChhHHHHHHHHHHHHHhcCCCC
Q psy9394         257 ALKNTGINK-LVVVGGVGANKQLRKKLNILKKQYNY-TVFYPKKEFCTDNGAMIAFAGAMRIENNYKSE  323 (339)
Q Consensus       257 ~~~~~~~~~-v~laGGVa~N~~l~~~l~~~l~~~~~-~v~~~~~~~~~D~G~aiG~a~~~~~~~~~~~~  323 (339)
                      +.+++++++ ||++||||+||++|++|.+.   .++ ++||||  .|||+|++||++.+...+.+...+
T Consensus       157 ~~~~~g~~~~L~laGGvaLN~~~N~~l~~~---~~~~~v~V~P--a~gD~G~aiGaA~~~~~~~~~~~~  220 (360)
T PF02543_consen  157 LLERTGIDNNLCLAGGVALNCKANGRLLEE---PGFDNVFVPP--AAGDAGLAIGAALYAWHELGGRRP  220 (360)
T ss_dssp             HHHHHT--SEEEEESGGGG-HHHHHHHHTS---TT-SEEE--T--TTSGGGHHHHHHHHHHHHTT----
T ss_pred             HHHHhCCCCeEEEechHHHHHHHHHHHHhc---CCCCeEEECC--CCCCcchHHHHHHHHHHHhcCCCC
Confidence            999999877 99999999999999999874   356 799999  899999999999999888776555

The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=99.91  E-value=2.9e-22  Score=180.19  Aligned_cols=239  Identities=17%  Similarity=0.201  Sum_probs=170.0

Q ss_pred             EEEEEecCCCceeEEEEEC-CCCce-eEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394           2 IILGIESSCDDSGLALYDT-HIKNL-RSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAY   79 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~-~~~~i-~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~   79 (339)
                      +.+|||.+|..++++|+++ + +++ +......+      ..+       .+..+.....++++++++|++..+++.++.
T Consensus         2 ~~~GIDiGStttK~Vlid~~~-~~~~~~~~~~~~------~~~-------~~~~~~~~~~l~~~~~~~g~~~~~i~~i~~   67 (262)
T TIGR02261         2 ITAGIDIGTGAIKTVLFEVDG-DKEECLAKRNDR------IRQ-------RDPFKLAEDAYDDLLEEAGLAAADVAYCAT   67 (262)
T ss_pred             eEEEEEcCcccEEEEEEecCC-CeeEEEEEEEec------CCC-------CCHHHHHHHHHHHHHHHcCCChhheEEEEE
Confidence            5789999999999999995 4 222 11111111      101       122344567889999999998889999887


Q ss_pred             eCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEE--eee
Q psy9394          80 TRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFL--LGE  157 (339)
Q Consensus        80 ~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~--~~~  157 (339)
                      | |+|..            +....+    .+++..||+.++.+..|-   --.++.+.|.+++++.+++.+.+.-  +++
T Consensus        68 T-GYGR~------------~~~a~~----~vtEIt~ha~GA~~~~p~---~~tIiDIGGQD~K~I~~~~~G~v~~f~MNd  127 (262)
T TIGR02261        68 T-GEGES------------LAFHTG----HFYSMTTHARGAIYLNPE---ARAVLDIGALHGRAIRMDERGKVEAYKMTS  127 (262)
T ss_pred             E-CCchh------------hhhhcC----CeeEEeHHHHHHHHHCCC---CCEEEEeCCCceEEEEEcCCCcEeeEEecC
Confidence            5 66632            111111    357899999999987652   2255555677999999876665543  467


Q ss_pred             ccCCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCe-eeecchHHHHHHHHHHhhccccccccHH
Q psy9394         158 TLDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNF-NFSFSGLKTSVLNVIKNIKLDSLKKEKA  236 (339)
Q Consensus       158 ~~~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~  236 (339)
                      .|+.++|+|++.+++.||++.+   ++..+|...+.     |.++.  +.| +|.    ++++.++++++      .+++
T Consensus       128 kCAAGTG~FLe~~A~~L~i~le---el~~~a~~~~~-----~~~is--s~CtVFa----eSevi~~~~~G------~~~e  187 (262)
T TIGR02261       128 QCASGSGQFLENIARYLGIAQD---EIGSLSQQADN-----PEKVS--GICAVLA----ETDVINMVSRG------ISAP  187 (262)
T ss_pred             cccccccHHHHHHHHHhCCCHH---HHHHHHhcCCC-----CCCcC--CCceEEc----hhhHHHHHHCC------CCHH
Confidence            8899999999999999999876   45555554432     44443  467 664    88899998876      7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEcc
Q psy9394         237 NIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYP  296 (339)
Q Consensus       237 diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~  296 (339)
                      ||++++++++++.+..++++...  ..++|+|+|||+.|..+.+.|.+.+.....++.++
T Consensus       188 dI~aGl~~sia~r~~~~~~~~~~--~~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~  245 (262)
T TIGR02261       188 NILKGIHESMADRLAKLLKSLGA--LDGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAE  245 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCC--CCCcEEEECcccccHHHHHHHHHHhccCCcceEec
Confidence            99999999999999888876621  12469999999999999999999885333344443

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=99.91  E-value=4.7e-22  Score=187.52  Aligned_cols=240  Identities=17%  Similarity=0.205  Sum_probs=175.3

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |+.+|||.++..+++++++++  +++..... +            +   ....+....+++++|+++|++..|++.++.|
T Consensus       144 g~~lGIDiGSTttK~Vl~dd~--~Ii~~~~~-~------------t---~~~~~~a~~~l~~~l~~~Gl~~~di~~i~~T  205 (404)
T TIGR03286       144 GLTLGIDSGSTTTKAVVMEDN--EVIGTGWV-P------------T---TKVIESAEEAVERALEEAGVSLEDVEAIGTT  205 (404)
T ss_pred             CEEEEEEcChhheeeEEEcCC--eEEEEEEe-e------------c---ccHHHHHHHHHHHHHHHcCCCccceeEEEee
Confidence            578999999999999999866  68764321 1            1   1234556678999999999988899999876


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceE--Eeeec
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYF--LLGET  158 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~--~~~~~  158 (339)
                       |.|.           ..+....+.+.+ ++.+.||+.++.+..+.......++.+.|.+++.+.++ ++.+.  .+++.
T Consensus       206 -GyGR-----------~~i~~~~~ad~i-v~EItaha~GA~~L~p~~~~v~TIIDIGGQDsK~I~l~-~G~v~dF~MNdk  271 (404)
T TIGR03286       206 -GYGR-----------FTIGEHFGADLI-QEELTVNSKGAVYLADKQEGPATVIDIGGMDNKAISVW-DGIPDNFTMGGI  271 (404)
T ss_pred             -eecH-----------HHHhhhcCCCce-EEEEhhHHHHHHHhcccCCCCcEEEEeCCCceEEEEEc-CCceeeEEEcCc
Confidence             6552           223322333432 78899999998887542112234555556789999985 46554  35678


Q ss_pred             cCCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCe-eeecchHHHHHHHHHHhhccccccccHHH
Q psy9394         159 LDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNF-NFSFSGLKTSVLNVIKNIKLDSLKKEKAN  237 (339)
Q Consensus       159 ~~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~d  237 (339)
                      |..++|+|++.+++.||++++   .+..+|..++..    |.++.  +.| +|.    ++++.++++++      .+++|
T Consensus       272 CAAGTGrFLE~~A~~Lgi~ie---El~~lA~~~~~~----pv~Is--S~CtVFa----eSevIsll~~G------~~~eD  332 (404)
T TIGR03286       272 CAGASGRFLEMTAKRLGVDIT---ELGKLALKGMPE----KVRMN--SYCIVFG----IQDLVTALAEG------ASPED  332 (404)
T ss_pred             ccccCcHHHHHHHHHhCCCHH---HHHHHHHhCCCC----CCCcc--Ccccccc----cHhHHHHHHCC------CCHHH
Confidence            888899999999999999876   566677666421    33443  456 554    67788888765      78999


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHhCC-CeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC
Q psy9394         238 IARGFLDAIIDVLTF-KCIAALKNTGI-NKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK  298 (339)
Q Consensus       238 iAa~~q~~l~~~l~~-~~~~~~~~~~~-~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~  298 (339)
                      |++++++++++.+.. +++    +.++ ++|+|+|||++|..+.+.+.+++   +.++++|+.
T Consensus       333 IaAGl~~SIa~rv~~~l~~----~~~i~~~VvftGGva~N~gvv~ale~~L---g~~iivPe~  388 (404)
T TIGR03286       333 VAAAACHSVAEQVYEQQLQ----EIDVREPVILVGGTSLIEGLVKALGDLL---GIEVVVPEY  388 (404)
T ss_pred             HHHHHHHHHHHHHHHHHhh----cCCCCCcEEEECChhhhHHHHHHHHHHh---CCcEEECCc
Confidence            999999999999885 344    3354 46999999999999999999987   678999874

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]

Probab=99.90  E-value=1e-21  Score=180.98  Aligned_cols=237  Identities=19%  Similarity=0.268  Sum_probs=173.8

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |.+||||.+|.+++++|++|+ + ++....+...+      | .|         .....+++.|++.+.+..+|+.+++|
T Consensus       135 ~~~LGID~GSTtTK~VLm~d~-~-~I~~~~~~~t~------g-~p---------~~~~~l~~~le~l~~~~~~I~~~~~T  196 (396)
T COG1924         135 MYTLGIDSGSTTTKAVLMEDG-K-EILYGFYVSTK------G-RP---------IAEKALKEALEELGEKLEEILGLGVT  196 (396)
T ss_pred             cEEEEEecCCcceeEEEEeCC-C-eEEEEEEEcCC------C-Ch---------hHHHHHHHHHHHcccChheeeeeeee
Confidence            789999999999999999999 4 44432222111      1 01         13467888999999988899999887


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceE--Eeeec
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYF--LLGET  158 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~--~~~~~  158 (339)
                       |.|..           .+...++... .++++.||+.++.+..|-  .. .++.+.|.+++++.+++ +.+.  .+++.
T Consensus       197 -GYGR~-----------~v~~~~~aD~-~~~Ei~ah~kgA~~f~p~--~d-tIiDIGGQD~K~i~i~d-G~v~df~mN~~  259 (396)
T COG1924         197 -GYGRN-----------LVGAALGADK-VVVEISAHAKGARYFAPD--VD-TVIDIGGQDSKVIKLED-GKVDDFTMNDK  259 (396)
T ss_pred             -cccHH-----------HhhhhhcCCc-ceeeeehhHHHHHHhCCC--Cc-EEEEecCcceeEEEEeC-CeeeeeEeccc
Confidence             66633           1222222222 467888999999987652  23 55666677999999984 5333  25778


Q ss_pred             cCCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCe-eeecchHHHHHHHHHHhhccccccccHHH
Q psy9394         159 LDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNF-NFSFSGLKTSVLNVIKNIKLDSLKKEKAN  237 (339)
Q Consensus       159 ~~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~d  237 (339)
                      |+.+.|||++.+|+.||++.+   ++..+|..+++     |..+  .+.| +|.    ++++++.++++      .+.+|
T Consensus       260 CAAGtGrFLE~~A~~Lgv~v~---E~~~~A~~~~~-----~v~i--~S~CaVF~----eSevi~~~~~G------~~~Ed  319 (396)
T COG1924         260 CAAGTGRFLEVIARRLGVDVE---ELGKLALKATP-----PVKI--NSRCAVFA----ESEVISALAEG------ASPED  319 (396)
T ss_pred             cccccchHHHHHHHHhCCCHH---HHHHHHhcCCC-----Cccc--CCeeEEEe----hHHHHHHHHcC------CCHHH
Confidence            999999999999999999987   56677776654     3333  3567 564    66777777765      78999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC
Q psy9394         238 IARGFLDAIIDVLTFKCIAALKNTGIN-KLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK  298 (339)
Q Consensus       238 iAa~~q~~l~~~l~~~~~~~~~~~~~~-~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~  298 (339)
                      |++++++++++.+...   ..++..++ .|+|.|||+.|..+.+.+.+.+   +.+|++||.
T Consensus       320 I~AGl~~Sv~~~v~~~---~~~~~~i~~~iv~~GGva~n~av~~ale~~l---g~~V~vP~~  375 (396)
T COG1924         320 ILAGLAYSVAENVAEK---VIKRVDIEEPIVLQGGVALNKAVVRALEDLL---GRKVIVPPY  375 (396)
T ss_pred             HHHHHHHHHHHHHHHH---HhhccCCCCCEEEECcchhhHHHHHHHHHHh---CCeeecCCc
Confidence            9999999999988762   23344555 4999999999999999999887   789999984

>TIGR03725 bact_YeaZ universal bacterial protein YeaZ

Probab=99.85  E-value=1.5e-20  Score=165.51  Aligned_cols=121  Identities=25%  Similarity=0.397  Sum_probs=102.5

Q ss_pred             EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCC
Q psy9394           3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRG   82 (339)
Q Consensus         3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~g   82 (339)
                      +|+||||+..+++||++++  +++++....               ..++|++.+.++++++|+++|++++|+|.|+|+.|
T Consensus         1 iLaidTs~~~~sval~~~~--~~~~~~~~~---------------~~~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~~G   63 (202)
T TIGR03725         1 ILAIDTSTEALSVALLDDG--EILAERSEE---------------AGRNHSEILLPMIEELLAEAGLSLQDLDAIAVGVG   63 (202)
T ss_pred             CEEEECCCcceEEEEEECC--EEEEEEeeh---------------hhHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence            6899999999999999977  687754321               24789999999999999999999999999999999


Q ss_pred             CCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEE
Q psy9394          83 PGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIK  145 (339)
Q Consensus        83 PG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~  145 (339)
                      ||+|||+|+|+++||+|+..+++|+++|+|+++.|......     ...+.+++|.+..++|.
T Consensus        64 PGSfTGlRig~~~akgla~~~~~p~~~vssL~~lA~~~~~~-----~~~v~~~idArr~~vy~  121 (202)
T TIGR03725        64 PGSFTGLRIGLATAKGLALALGIPLVGVSSLEALAAQAPAG-----KGPVLVAIDARRGEVYW  121 (202)
T ss_pred             CChHHhHHHHHHHHHHHHHHhCCCEEecCHHHHHHhhCccC-----CCeEEEEEEcCCCCEEE
Confidence            99999999999999999999999999999999998764211     23355667877555554

This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.

>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.5e-20  Score=166.81  Aligned_cols=126  Identities=27%  Similarity=0.444  Sum_probs=105.0

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |++|+||||+..+++|++..+.++++.+....               ..++|.+.++++++.+|.++|++++|+|.|+|+
T Consensus         1 m~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~~---------------~~r~hse~l~~~i~~ll~~~~~~~~dld~iav~   65 (220)
T COG1214           1 MKILAIDTSTSALSVALYLADDGKVLAEHTEK---------------LKRNHAERLMPMIDELLKEAGLSLQDLDAIAVA   65 (220)
T ss_pred             CcEEEEEcChhhhhhheeecCCCcEEEEEEEe---------------ccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEc
Confidence            89999999999999999877112677654321               237899999999999999999999999999999


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEE
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIK  145 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~  145 (339)
                      .|||+|||+|||+.+||+|+..+++|+++|+++++.|.. ....+   ...+.+.+|.+..++|.
T Consensus        66 ~GPGSFTGlRIG~~~AkgLA~~l~iplvgvssL~~~A~~-~~~~~---~~~v~v~idArr~~vY~  126 (220)
T COG1214          66 KGPGSFTGLRIGVAFAKGLALALNIPLVGVSSLEALAQG-GAEKN---AGFVLVAIDARRGEVYW  126 (220)
T ss_pred             cCCCcccchhhHHHHHHHHHHHcCCCEEEeCHHHHHHHh-hhccC---CCceEEEEeccccceEe
Confidence            999999999999999999999999999999999999987 33322   34456667877666555

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=99.83  E-value=1.2e-18  Score=158.22  Aligned_cols=243  Identities=19%  Similarity=0.231  Sum_probs=175.7

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      +++|||.++..+++++++++  ++++......                ...++.+...+.+++++.++++.++..|+++ 
T Consensus         1 ~~lGIDiGtts~K~vl~d~g--~il~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~~i~~i~~T-   61 (248)
T TIGR00241         1 ISLGIDSGSTTTKMVLMEDG--KVIGYKWLDT----------------TPVIEETARAILEALKEAGIGLEPIDKIVAT-   61 (248)
T ss_pred             CEEEEEcChhheEEEEEcCC--EEEEEEEecC----------------CCCHHHHHHHHHHHHHHcCCChhheeEEEEE-
Confidence            37899999999999999855  7887643211                1234455678888899999988899999887 


Q ss_pred             CCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEE--eeecc
Q psy9394          82 GPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFL--LGETL  159 (339)
Q Consensus        82 gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~--~~~~~  159 (339)
                      |.|...           +.. .+ +  .+++..||+.++.+..|.  -. .++.+.|.+++++.++ .+++.-  ++..|
T Consensus        62 g~~~~~-----------v~~-~~-~--~~~ei~~~~~g~~~~~~~--~~-~vidiGgqd~k~i~~~-~g~~~~~~~n~~c  122 (248)
T TIGR00241        62 GYGRHK-----------VGF-AD-K--IVTEISCHGKGANYLAPE--AR-GVIDIGGQDSKVIKID-DGKVDDFTMNDKC  122 (248)
T ss_pred             CCCccc-----------ccc-cC-C--ceEEhhHHHHHHHHHCCC--CC-EEEEecCCeeEEEEEC-CCcEeeeeecCcc
Confidence            333211           111 12 2  478999999999887662  22 4555556789999998 465543  45678


Q ss_pred             CCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCe-eeecchHHHHHHHHHHhhccccccccHHHH
Q psy9394         160 DDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNF-NFSFSGLKTSVLNVIKNIKLDSLKKEKANI  238 (339)
Q Consensus       160 ~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~di  238 (339)
                      ..+.|+|++.+++.||++++   +++.++..+..     |.++.  ..| +|.    ++++.+.+.+.      .+++||
T Consensus       123 a~Gtg~f~e~~a~~l~~~~~---e~~~~~~~~~~-----~~~~~--~~c~vf~----~s~vi~~l~~g------~~~~di  182 (248)
T TIGR00241       123 AAGTGRFLEVTARRLGVSVE---ELGSLAEKADR-----KAKIS--SMCTVFA----ESELISLLAAG------VKKEDI  182 (248)
T ss_pred             cccccHHHHHHHHHcCCCHH---HHHHHHhcCCC-----CCCcC--CEeEEEe----chhHHHHHHCC------CCHHHH
Confidence            88999999999999999876   45556555432     33332  457 665    67777777654      688999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHH
Q psy9394         239 ARGFLDAIIDVLTFKCIAALKNTGIN-KLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAG  312 (339)
Q Consensus       239 Aa~~q~~l~~~l~~~~~~~~~~~~~~-~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~  312 (339)
                      ++++++.++..+.+++.+.    +.+ +|+++||++.|..+.+.+.+.+   +.++++|+..   ....++|+|.
T Consensus       183 ~~~~~~~va~~i~~~~~~~----~~~~~Vvl~GGva~n~~l~~~l~~~l---g~~v~~~~~~---~~~~AlGaAl  247 (248)
T TIGR00241       183 LAGVYESIAERVAEMLQRL----KIEAPIVFTGGVSKNKGLVKALEKKL---GMKVITPPEP---QIVGAVGAAL  247 (248)
T ss_pred             HHHHHHHHHHHHHHHHhhc----CCCCCEEEECccccCHHHHHHHHHHh---CCcEEcCCCc---cHHHHHHHHh
Confidence            9999999999998876543    455 8999999999999999999887   6788888731   1245666664

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A

Probab=99.80  E-value=5e-18  Score=158.58  Aligned_cols=165  Identities=17%  Similarity=0.169  Sum_probs=129.1

Q ss_pred             eecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceE--EeeeccCCcchhhhHHHHhHcCCCCCcHHHHHh
Q psy9394         109 GINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYF--LLGETLDDAAGDTFDKIAKMLDLGYPGGPEISL  186 (339)
Q Consensus       109 ~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~--~~~~~~~~s~G~~~d~va~~LG~~~~gg~~le~  186 (339)
                      .++++.||+.++.+..|-   --.++.+.|.+++++.+++++.+.  .+++.|+.++|+|++.+++.||++.+   .+..
T Consensus       250 vitEItcHA~GA~~l~P~---vrTIIDIGGQDsK~I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~Lgi~le---El~~  323 (432)
T TIGR02259       250 IRSEILCHGLGAHLMYPG---TRTVLDIGGQDTKGIQIDDHGIVENFQMNDRCAAGCGRYLGYIADEMNMGLH---ELGP  323 (432)
T ss_pred             eeeeHHHHHHHHHHHCCC---CCEEEEeCCCceEEEEEcCCCcEeeeeecCcccccchHHHHHHHHHcCCCHH---HHHH
Confidence            458999999999988652   225555567799999998767655  35678999999999999999999875   4555


Q ss_pred             ccccCCCCcccCCCccccCCCe-eeecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q psy9394         187 ISEFGDPNIYKFPRPMLYTNNF-NFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINK  265 (339)
Q Consensus       187 lA~~g~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~  265 (339)
                      +|..++.     |.++.  +.| +|.    +|++.++++++      .+++||++++++++++.+..++.+...  -.++
T Consensus       324 lA~~a~~-----pv~IS--S~CtVFA----ESEVIslla~G------~~reDIaAGL~~SIA~Rv~s~l~r~~~--i~~~  384 (432)
T TIGR02259       324 LAMKSSK-----PARIN--STCTVFA----GAELRDRLALG------DKREDILAGLHRAIILRAISIISRSGG--ITDQ  384 (432)
T ss_pred             HHhcCCC-----CCCcC--CcceEEe----hHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHhcccC--CCCC
Confidence            6655442     44543  567 675    88899999876      799999999999999999998876532  2358


Q ss_pred             EEEEcchhhhHHHHHHHHHHHHhC--CcEEEccCC
Q psy9394         266 LVVVGGVGANKQLRKKLNILKKQY--NYTVFYPKK  298 (339)
Q Consensus       266 v~laGGVa~N~~l~~~l~~~l~~~--~~~v~~~~~  298 (339)
                      |+|+|||+.|..+.+.|.+.+...  +.++++|+.
T Consensus       385 VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~  419 (432)
T TIGR02259       385 FTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPD  419 (432)
T ss_pred             EEEECCccccHHHHHHHHHHHccccCCCeEecCCC
Confidence            999999999999999999988532  357888874

This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).

>PRK13317 pantothenate kinase; Provisional

Probab=99.67  E-value=2.5e-14  Score=131.30  Aligned_cols=252  Identities=18%  Similarity=0.221  Sum_probs=163.0

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |+.+|||.++..+++|+++++ +++.+.. +.                 .+..+    .+...+.    +..++..|++|
T Consensus         2 ~~~iGIDiGstt~K~v~~~~~-~~~~~~~-~~-----------------~~~~~----~~~~~l~----~~~~~~~i~~T   54 (277)
T PRK13317          2 EMKIGIDAGGTLTKIVYLEEK-KQRTFKT-EY-----------------SAEGK----KVIDWLI----NLQDIEKICLT   54 (277)
T ss_pred             CceEEEEeCcccEEEEEEcCC-CeEEEEe-ec-----------------cHHHH----HHHHHhh----ccCCceEEEEE
Confidence            367999999999999999887 4444322 11                 11112    2222222    23578888888


Q ss_pred             CCCCCCchhHHHHHHHHHHHH--hcCCCEEeecchhHHhhhccccC-----CCCCCcEEEEEEeCCeeEEEEecCCcceE
Q psy9394          81 RGPGLPGSLLVGSSIACSIAL--SINKPVIGINHLEGHLLSPFLSN-----NSLTFPFIALLVSGGHTQLIKVNSIGNYF  153 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~--~~~~p~~~v~h~~aHa~s~~~~s-----~~~~~~~~~l~~dGg~~~~~~~~~~~~~~  153 (339)
                       |-|.           ..++.  ..++|++.++++.||+.++.+..     +.  .|++. +.-|.+.++..+.+. ..+
T Consensus        55 -G~g~-----------~~~~~~~~~~~~~~~v~E~~a~~~g~~~l~~~~~~~~--~~~~i-~~iG~g~si~~~~g~-~~~  118 (277)
T PRK13317         55 -GGKA-----------GYLQQLLNYGYPIAEFVEFEATGLGVRYLLKEEGHDL--NDYIF-TNIGTGTSIHYVDGN-SQR  118 (277)
T ss_pred             -Ccch-----------hhhhHHHhcCCCeeeeHHHHHHHHHHHHHHHhcCCCC--CcEEE-EEecCceEEEEEeCC-ceE
Confidence             4342           22222  36789888999999999988765     43  46533 334445667777654 555


Q ss_pred             EeeeccCCcchhhhHHHHhHc-CC-CCCcHHHHHhccccCCCCcccCCC---------ccccCCCeeeecchHHHHHHHH
Q psy9394         154 LLGETLDDAAGDTFDKIAKML-DL-GYPGGPEISLISEFGDPNIYKFPR---------PMLYTNNFNFSFSGLKTSVLNV  222 (339)
Q Consensus       154 ~~~~~~~~s~G~~~d~va~~L-G~-~~~gg~~le~lA~~g~~~~~~~~~---------~l~~~~~~~~~~~~l~~~~~~~  222 (339)
                      .++.++  .-|-+++-++++| +. +++   .+..||..|+....++.+         ++.....|. .|.  +  +..+
T Consensus       119 r~~Gt~--iGGgt~~gL~~lL~~~~~~~---el~~la~~g~~~~~Dl~v~dIy~~~~~~l~i~s~cs-vFa--k--v~~l  188 (277)
T PRK13317        119 RVGGTG--IGGGTIQGLSKLLTNISDYE---QLIELAKHGDRNNIDLKVGDIYKGPLPPIPGDLTAS-NFG--K--VLHH  188 (277)
T ss_pred             EEcccc--ccHHHHHHHHHHHhCCCCHH---HHHHHHhcCCCccccceeccccCCCCCCCCCceeEe-hhh--h--hhhh
Confidence            555544  2234888888887 43 344   576788888743222111         111112342 232  2  3444


Q ss_pred             HHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEc-chhhhHHHHHHHHHHHHhCCcEEEccCCCCC
Q psy9394         223 IKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVG-GVGANKQLRKKLNILKKQYNYTVFYPKKEFC  301 (339)
Q Consensus       223 ~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laG-GVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~  301 (339)
                      +++      ..+++|||++++..+.+.+..++..+.+..++++|+|+| |++.|..+++.+.+.++..+.++++|+..  
T Consensus       189 ~~~------g~~~eDIaasl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~--  260 (277)
T PRK13317        189 LDS------EFTSSDILAGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENG--  260 (277)
T ss_pred             hcc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCC--
Confidence            433      368999999999999999999988878888899999999 79999999999998886667788888731  


Q ss_pred             ChhHHHHHHHHHH
Q psy9394         302 TDNGAMIAFAGAM  314 (339)
Q Consensus       302 ~D~G~aiG~a~~~  314 (339)
                       .-..|+|++.+.
T Consensus       261 -~~~gAlGAaL~a  272 (277)
T PRK13317        261 -GYSGAIGALLLA  272 (277)
T ss_pred             -chhHHHHHHHHh
Confidence             112445666554

>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type

Probab=99.16  E-value=1.2e-08  Score=93.37  Aligned_cols=256  Identities=16%  Similarity=0.204  Sum_probs=157.1

Q ss_pred             EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCC
Q psy9394           3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRG   82 (339)
Q Consensus         3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~g   82 (339)
                      .+|||.++..++++..+.+ +++.+.. +.                 +++.+.+.+.++......    +.+..|++|.|
T Consensus         2 ~iGiDiGgT~~Kiv~~~~~-~~~~f~~-~~-----------------~~~~~~~~~~l~~~~~~~----~~~~~i~~TGg   58 (279)
T TIGR00555         2 RIGIDIGGTLIKVVYEEPK-GRRKFKT-FE-----------------TTNIDKFIEWLKNQIHRH----SRITTLCATGG   58 (279)
T ss_pred             eEEEEeCcceEEEEEEcCC-CcEEEEE-ee-----------------cccHHHHHHHHHHHHHhh----cCceEEEEECC
Confidence            5899999999999999554 4676542 21                 123344445554443322    35677888744


Q ss_pred             CCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCC----CCCCcEEEEEEeCCeeEEEEecCCcceEEeeec
Q psy9394          83 PGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNN----SLTFPFIALLVSGGHTQLIKVNSIGNYFLLGET  158 (339)
Q Consensus        83 PG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~----~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~  158 (339)
                       |.+       .+++.+....++++..++++.|-..+..+..+    ...+|++.+-+ |.+++++.+++. .++.++.+
T Consensus        59 -Ga~-------k~~~~~~~~~~v~~~k~dE~~a~~~g~~~ll~~~~~~~~~p~llvnI-GsGvSi~~v~~~-~~~Rv~Gt  128 (279)
T TIGR00555        59 -GAF-------KFAELIYESAGIQLHKFDEFDALIQGLNYLLKEEPKDDIYPYLLVNI-GTGTSILYVDGD-NYERVGGT  128 (279)
T ss_pred             -cHH-------HHHHHhccccCCcccchhHHHHHHHHHHHHhhcccCCCCCceEEEEe-cCCeEEEEEcCc-cEEEEcCc
Confidence             321       22333333334555567788888887666421    01268777776 877888888875 77777776


Q ss_pred             cCCcchhhhHHHHhHcC-C-CCCcHHHHHhccccCCCCcccCCC-ccccCCCeeeecch--HHHHHHHHHHhhccccccc
Q psy9394         159 LDDAAGDTFDKIAKMLD-L-GYPGGPEISLISEFGDPNIYKFPR-PMLYTNNFNFSFSG--LKTSVLNVIKNIKLDSLKK  233 (339)
Q Consensus       159 ~~~s~G~~~d~va~~LG-~-~~~gg~~le~lA~~g~~~~~~~~~-~l~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~  233 (339)
                      +-.. |-|+ -++++|- . +++   ++..||..|+....++-+ .++..+......++  +-+.+-++..+.  .....
T Consensus       129 ~iGG-GTf~-GL~~LL~~~~~~~---el~~lA~~G~~~~vDl~V~dIYg~~y~~~~L~~d~iASsfGkv~~~~--~~~~~  201 (279)
T TIGR00555       129 SLGG-GTFL-GLGKLLTGIQTFD---ELLEMAQHGDRTNVDLLVGDIYGGDYSESGLDGSLTASSFGKVLSKH--LDQSF  201 (279)
T ss_pred             cccH-HHHH-HHHHHHcCCCCHH---HHHHHHHcCCCcccccccccccCCCCCCCCCCcceeeeccchhhccc--cccCC
Confidence            5333 7787 4555554 3 444   576789888753221110 01100000000000  000011111100  01246


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc-hhhhHHHHHHHHHHHHhCCcEEEccCC
Q psy9394         234 EKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGG-VGANKQLRKKLNILKKQYNYTVFYPKK  298 (339)
Q Consensus       234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGG-Va~N~~l~~~l~~~l~~~~~~v~~~~~  298 (339)
                      +++|||+|+...+...+..++.-....++.++|++.|| ..-|..+++.+.+.+.-...++++|+.
T Consensus       202 ~~eDiAaSLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h  267 (279)
T TIGR00555       202 SPEDIAASLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEH  267 (279)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECC
Confidence            79999999999999999999988888889999999999 778999999998887655667788763

This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).

>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis

Probab=98.71  E-value=6.5e-07  Score=82.32  Aligned_cols=238  Identities=18%  Similarity=0.166  Sum_probs=122.5

Q ss_pred             EEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccch-HHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC-
Q psy9394           4 LGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPE-LAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR-   81 (339)
Q Consensus         4 Lgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~-   81 (339)
                      ||||.++..+.++|++.+ ++++......         +...+ ....+..+.+...+++++++.+.++.|++.+++.. 
T Consensus         1 lGIDgGgTkt~~vl~d~~-g~il~~~~~~---------~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g~a   70 (271)
T PF01869_consen    1 LGIDGGGTKTKAVLVDEN-GNILGRGKGG---------GANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIGAA   70 (271)
T ss_dssp             EEEEECSSEEEEEEEETT-SEEEEEEEES----------TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEEEE
T ss_pred             CEEeeChheeeeEEEeCC-CCEEEEEEeC---------CCCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeeeEe
Confidence            799999999999999987 7777654321         11111 11223345567889999999999999998884431 


Q ss_pred             CCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeee--cc
Q psy9394          82 GPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGE--TL  159 (339)
Q Consensus        82 gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~--~~  159 (339)
                      |-|...- +  ..+.+.+...   ++..++  .++.+.. ...   ..+ -++++.|.++..+..+++++...++.  .+
T Consensus        71 G~~~~~~-~--~~~~~~~~~~---~v~~~~--Da~~al~-~~~---~~~-giv~I~GTGS~~~~~~~~g~~~r~gG~G~~  137 (271)
T PF01869_consen   71 GYGRAGD-E--QEFQEEIVRS---EVIVVN--DAAIALY-GAT---AED-GIVVIAGTGSIAYGRDRDGRVIRFGGWGHC  137 (271)
T ss_dssp             EEEETTT-T--THHHHHHHHH---EEEEEE--HHHHHHH-HHS---TSS-EEEEEESSSEEEEEEETTSEEEEEEESCTT
T ss_pred             eecCccc-c--cchhhcceEE---EEEEEH--HHHHHhC-CCC---CCc-EEEEEcCCCceEEEEEcCCcEEEeCCCCCC
Confidence            2111110 0  0011122211   433222  2222111 111   112 45667787777777775666666654  34


Q ss_pred             CCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHH
Q psy9394         160 DDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIA  239 (339)
Q Consensus       160 ~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diA  239 (339)
                      -.-.|.+|+...+.|.....   .++.+.....   |.-+.+   ...| -.|.+.   +.....+     .+....+|.
T Consensus       138 ~gD~GSg~~ig~~~L~~~~~---~~d~~~~~~~---~~~~~~---~~~~-A~fa~~---v~~~a~~-----gd~~a~~Il  199 (271)
T PF01869_consen  138 LGDEGSGYWIGRRALRAVLR---ELDGRAEPTP---YAKPAS---NARI-AVFAPT---VFEAAQQ-----GDEVARDIL  199 (271)
T ss_dssp             TTTTTSHHHHHHHHHHHHHH---HHTTSSTTSH---HHHTT----HHHH-HCTHHH---HHHHHHT-----TTHHHHHHH
T ss_pred             cCCCCcHHHHHHHHHhHHHH---HhcCccccCc---ccCCCC---hhhe-ehhhHH---HHHHHHc-----CCchHHHHH
Confidence            55678888876666532211   1111211110   000000   0001 112111   1211111     123456666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCC--eEEEEcchhhhHHHHHHHHHHH
Q psy9394         240 RGFLDAIIDVLTFKCIAALKNTGIN--KLVVVGGVGANKQLRKKLNILK  286 (339)
Q Consensus       240 a~~q~~l~~~l~~~~~~~~~~~~~~--~v~laGGVa~N~~l~~~l~~~l  286 (339)
                      ....+.|++.+..++.    +.+..  +|+++|||+.|..+.+.+.+.+
T Consensus       200 ~~a~~~la~~i~~~~~----~~~~~~~~v~l~GGv~~~~~~~~~l~~~l  244 (271)
T PF01869_consen  200 AEAADELAELIKAVLK----RLGPEKEPVVLSGGVFKNSPLVKALRDAL  244 (271)
T ss_dssp             HHHHHHHHHHHHHHHH----TCTCCCCSEEEESGGGGCHHHHHHHGGGS
T ss_pred             HHHHHHHHHHHHHHHH----hcCCCCCeEEEECCccCchHHHHHHHHHH
Confidence            6666666665555544    43332  3999999999988887774443

The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=98.07  E-value=0.0046  Score=56.80  Aligned_cols=63  Identities=10%  Similarity=0.164  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHH
Q psy9394         245 AIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGA  313 (339)
Q Consensus       245 ~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~  313 (339)
                      .+.+.+++.+++..+....+.|+|+||.++...+.+.+.+.+   +.++.+++.   -+-..++|++.|
T Consensus       204 ~~~~~i~~~i~~~l~~~~~~~IvLtGG~s~lpgl~e~l~~~l---g~~v~~~~~---P~~~~a~Gaa~~  266 (267)
T PRK15080        204 PVVEKMASIVARHIEGQDVEDIYLVGGTCCLPGFEEVFEKQT---GLPVHKPQH---PLFVTPLGIALS  266 (267)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEECCcccchhHHHHHHHHh---CCCcccCCC---chHHHHHHHHhh
Confidence            344455556666666667889999999999999999999887   566666642   233466676654

>PRK03011 butyrate kinase; Provisional

Probab=97.98  E-value=0.0045  Score=59.21  Aligned_cols=71  Identities=13%  Similarity=0.231  Sum_probs=46.2

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecc-cccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNL-VHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAY   79 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~-~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~   79 (339)
                      |+||.|+-++.++++|+++++  +.++++.+..-. --++|.-+.      ...+.-...+..+|++.|+..+++++|+.
T Consensus         2 ~~il~inpgststk~a~~~~~--~~~~~~~~~h~~~~~~~~~~~~------~q~~~r~~~i~~~l~~~g~~~~~l~av~~   73 (358)
T PRK03011          2 MRILVINPGSTSTKIAVFEDE--KPIFEETLRHSAEELEKFKTII------DQYEFRKQAILDFLKEHGIDLSELDAVVG   73 (358)
T ss_pred             CEEEEEcCCCchheEEEEcCC--ceeeeeccccCHHHHhcCCCcc------chHHHHHHHHHHHHHHcCCChhcceEEEE
Confidence            789999999999999999988  455543221100 001221111      12233346788889999999999999954

>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P

Probab=97.70  E-value=0.0088  Score=57.16  Aligned_cols=229  Identities=18%  Similarity=0.221  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHhCCCCCCCcCEEEEeC----C-CC---CCchhHHHHHHHHHHHHh------------------cCCCEEe
Q psy9394          56 IIPLLSKLLKNSNLELKKIDIIAYTR----G-PG---LPGSLLVGSSIACSIALS------------------INKPVIG  109 (339)
Q Consensus        56 l~~~i~~~l~~~~i~~~did~ia~~~----g-PG---~~t~lr~g~~~ak~la~~------------------~~~p~~~  109 (339)
                      .-+++.++++++++++++||.|+.-.    | |.   .+ .+.+|-.  ..+|..                  .|.|+++
T Consensus        70 ~a~av~~~l~~~~i~~~~I~~IgsHGQTv~H~P~~~~~~-TlQiG~~--~~iA~~tgi~vV~DFR~~Dia~GGqGAPLvP  146 (364)
T PF03702_consen   70 FADAVNQFLKKNGISPSDIDLIGSHGQTVFHRPEGQHPF-TLQIGDP--AVIAERTGITVVSDFRSADIAAGGQGAPLVP  146 (364)
T ss_dssp             HHHHHHHHHHHCT--GGGEEEEEE--EEEEEECCCTTTE-EEEES-H--HHHHHHHSS-EEE--CHHHHHTTS-S---CH
T ss_pred             HHHHHHHHHHHcCCCcccccEEEeCCcceecCcCCCCCc-eEecCCH--HHHHHHHCcCEEeechHHHHhccCCCCCccc
Confidence            44688899999999999999998632    1 53   12 2233331  223333                  3556655


Q ss_pred             ecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccCCcch-hhhHHHH-hHcCCCCCcHHHHHhc
Q psy9394         110 INHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAG-DTFDKIA-KMLDLGYPGGPEISLI  187 (339)
Q Consensus       110 v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~G-~~~d~va-~~LG~~~~gg~~le~l  187 (339)
                      +-|-..      +.++  ..+ .+++==||-+-+-.+...+++.-+    |..-| .+.|... +..+.+|+...+   +
T Consensus       147 ~~~~~l------f~~~--~~~-~~~lNIGGIaNiT~l~~~~~~~~f----DtGPGN~liD~~~~~~~~~~yD~~G~---~  210 (364)
T PF03702_consen  147 FFHQLL------FRHP--KKP-RAVLNIGGIANITFLPPGGDVIGF----DTGPGNMLIDAWIQRHTGLPYDKDGE---W  210 (364)
T ss_dssp             HHHHHH------H--T--TS--EEEEEESSEEEEEEE-TTS--EEE----EEEESSHHHHHHHHHHCS-SS-GGGH---H
T ss_pred             HHHHHH------hCCC--CCC-EEEEecCCceEEEEecCCCCceee----ccCcHHHHHHHHHHHHhCCCcCcCcH---h
Confidence            444322      1111  123 333334555544454433333222    23333 4677654 567777863323   3


Q ss_pred             cccCCCC-----------cccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHH
Q psy9394         188 SEFGDPN-----------IYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIA  256 (339)
Q Consensus       188 A~~g~~~-----------~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~  256 (339)
                      |+.|+..           .+..+.| ++.+.-.|..    ..+...+.+.     ..+++|+.|.+-+..+..|++.+++
T Consensus       211 A~~G~v~~~ll~~ll~~pyf~~~pP-KStGrE~F~~----~~l~~~l~~~-----~~~~~D~~aTlt~~TA~sI~~~i~~  280 (364)
T PF03702_consen  211 AASGKVNEELLDRLLSHPYFKRPPP-KSTGREDFGL----EWLQQILDKF-----SLSPEDILATLTEFTAQSIADAIRR  280 (364)
T ss_dssp             HHCS---HHHHHHHHTSHHHHS-SS-----TTTSSH----HHHHHHCTTS-----TT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCcCCCCHHHHHHHhcCccccCCCC-CcCCccccCH----HHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHHHHHh
Confidence            4455431           1112222 1111112321    1123333332     1268999999999989888888887


Q ss_pred             HHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC-CCCCh--hHHHHHHHHHHHHH
Q psy9394         257 ALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK-EFCTD--NGAMIAFAGAMRIE  317 (339)
Q Consensus       257 ~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~-~~~~D--~G~aiG~a~~~~~~  317 (339)
                      +...  .+.|+++||=+.|..|.++|.+++.  +..|..... -.+.|  .++++|+.+++.+.
T Consensus       281 ~~~~--~~~v~v~GGGa~N~~L~~~L~~~l~--~~~v~~~~~~gi~~~~~EA~aFA~La~~~~~  340 (364)
T PF03702_consen  281 FPPQ--PDEVYVCGGGARNPFLMERLQERLP--GIPVKTTDELGIPPDAKEAMAFAWLAYRRLN  340 (364)
T ss_dssp             H-TT---EEEEEESGGGG-HHHHHHHHHH-T--TCEEEEGGGGTS-CCCHHHHHHHHHHHHHHC
T ss_pred             cCCC--CceEEEECCCcCCHHHHHHHHhhCC--CCEEecHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence            7543  5799999999999999999999874  456654432 12334  78888888887643

It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.

>PLN02920 pantothenate kinase 1

Probab=97.64  E-value=0.028  Score=53.79  Aligned_cols=211  Identities=12%  Similarity=0.146  Sum_probs=119.9

Q ss_pred             CCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCC---------------C------CCCc
Q psy9394          72 KKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNN---------------S------LTFP  130 (339)
Q Consensus        72 ~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~---------------~------~~~~  130 (339)
                      .++..|.+|.| |.+       .++..+....++++..+.+++|....+.+...               +      .-+|
T Consensus        95 ~~~~~i~~TGG-GA~-------k~~~~~~~~~~i~~~k~DEm~~li~Gl~fLl~~~~~e~f~y~~~~~~~~~~~~~~lyP  166 (398)
T PLN02920         95 HDKNFIKATGG-GAY-------KFADLFKEKLGISLDKEDEMDCLVTGANFLLKAVHHEAFTYLDGQKEFVQIDHNDLYP  166 (398)
T ss_pred             CCceEEEEECC-cHH-------HHHHHHHhhhCCCceeecHHHHHHHHHHHHHhhCCcceeEeccCcccccccCccccCc
Confidence            56788888754 433       23444445566777778888888877644310               0      1245


Q ss_pred             EEEEEEeCCeeEEEEecCCcceEEeeeccCCcchhhhHHHHhHcCC-CCCcHHHHHhccccCCCCcccCCCc-cccCCCe
Q psy9394         131 FIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDL-GYPGGPEISLISEFGDPNIYKFPRP-MLYTNNF  208 (339)
Q Consensus       131 ~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~G~~~d~va~~LG~-~~~gg~~le~lA~~g~~~~~~~~~~-l~~~~~~  208 (339)
                      ++.+- -|..+.++.+.+.++++.++.+. -.-|-|+.-+.-++|. +|+   +|-.||..|+....++-+. ++.  +.
T Consensus       167 yLLVN-IGSGVSilkV~~~~~~~RVgGTs-IGGGT~~GL~~LLtg~~sfd---Ell~lA~~Gd~~nvDllVgDIYG--g~  239 (398)
T PLN02920        167 YLLVN-IGSGVSMIKVDGDGKFERVSGTS-VGGGTFWGLGKLLTKCKSFD---ELLELSHQGNNRVIDMLVGDIYG--GM  239 (398)
T ss_pred             eEEEE-cCCCEEEEEEeCCCcEEEEcccc-cchHhHHHHHHHHcCCCCHH---HHHHHHhCCCccccCceeccccC--CC
Confidence            54433 35557788888777888876642 3445566655555554 344   5667888888642221110 110  00


Q ss_pred             eeecchHHH-HHHHHHHhhc---cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhH-HHHHHHH
Q psy9394         209 NFSFSGLKT-SVLNVIKNIK---LDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANK-QLRKKLN  283 (339)
Q Consensus       209 ~~~~~~l~~-~~~~~~~~~~---~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~-~l~~~l~  283 (339)
                      ++.-.+|.. .+.+-+.+..   .+....+++|||+++...+...+.+++--.++.+++++|+++|.--.|. ...+.|.
T Consensus       240 ~y~~~gL~~d~iASsFGKv~~~~~~~~~~s~eDia~SLL~mVs~nIgqiA~L~A~~~~ik~Ivf~G~fir~~~~tm~~ls  319 (398)
T PLN02920        240 DYSKIGLSSTTIASSFGKAISDNKELEDYKPEDVARSLLRMISNNIGQISYLNALRFGLKRIFFGGFFIRGHSYTMDTIS  319 (398)
T ss_pred             CCCCCCCCccceeeccCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccCcHHHHHHHH
Confidence            000000100 0111111100   0112356999999999999999999999999999999999999966665 3333222


Q ss_pred             H---HHHhCCcEEEccC
Q psy9394         284 I---LKKQYNYTVFYPK  297 (339)
Q Consensus       284 ~---~l~~~~~~v~~~~  297 (339)
                      -   .-...+.+.++++
T Consensus       320 ~a~~fwS~g~~ka~FLr  336 (398)
T PLN02920        320 VAVHFWSKGEAKAMFLR  336 (398)
T ss_pred             HHHHHhccCceeEEEec
Confidence            2   1122345666665

>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed

Probab=97.61  E-value=0.029  Score=53.61  Aligned_cols=235  Identities=17%  Similarity=0.204  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHhCCCCCCCcCEEEEeC----C-CC-CCchhHHHHH--H-------------HHHHHH-hcCCCEEeecch
Q psy9394          56 IIPLLSKLLKNSNLELKKIDIIAYTR----G-PG-LPGSLLVGSS--I-------------ACSIAL-SINKPVIGINHL  113 (339)
Q Consensus        56 l~~~i~~~l~~~~i~~~did~ia~~~----g-PG-~~t~lr~g~~--~-------------ak~la~-~~~~p~~~v~h~  113 (339)
                      +-++++++++++++++++||.|++-.    | |. .+| +.+|..  .             .+.++. ..|.|++++-|.
T Consensus        73 ~a~av~~~~~~~~l~~~~id~IgsHGQTv~H~P~~~~T-lQiG~~~~iA~~tgi~VV~DFR~~D~a~GGqGAPLvp~~~~  151 (365)
T PRK09585         73 FAEAVNALLAEAGLSPEDIDAIGSHGQTVRHRPGEGFT-LQIGDGALIAELTGITVVADFRRRDVAAGGQGAPLVPAFHQ  151 (365)
T ss_pred             HHHHHHHHHHHcCCCccCccEEEeCCcccccCCCCCCe-EEcCCHHHHHHHHCcCEEecChHHHHhcCCCCCCchHHHHH
Confidence            44688899999999999999999742    2 43 222 222221  0             112221 236677766653


Q ss_pred             hHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCC-cceEEeeeccCCcchh-hhHHHHhHcCC-CCCcHHHHHhcccc
Q psy9394         114 EGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSI-GNYFLLGETLDDAAGD-TFDKIAKMLDL-GYPGGPEISLISEF  190 (339)
Q Consensus       114 ~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~-~~~~~~~~~~~~s~G~-~~d~va~~LG~-~~~gg~~le~lA~~  190 (339)
                      ...      .++  ... .+++==||.+-+-.+... +.  ++  .+|..-|. +.|...+.++- +|+.+.+   +|+.
T Consensus       152 ~Lf------~~~--~~~-~~~lNiGGIaNiT~l~~~~~~--~~--afDtGPgN~liD~~~~~~~~~~~D~~G~---~A~~  215 (365)
T PRK09585        152 ALF------GHP--DET-RAVLNIGGIANITLLPPGGGP--VI--GFDTGPGNALIDAWIQRHGGKPYDKDGA---WAAS  215 (365)
T ss_pred             HHh------cCC--CCc-eEEEecCCceEEEEecCCCCC--ee--EecCChhHHHHHHHHHHHhCCCCCCCCh---HHhC
Confidence            331      111  112 233333554444444332 22  22  23444444 67777777643 5642212   4444


Q ss_pred             CCCC-----------cccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9394         191 GDPN-----------IYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALK  259 (339)
Q Consensus       191 g~~~-----------~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~  259 (339)
                      |+..           .+..+.| ++.+.-.|.    ...+.++++..     ..+.+|+.+.+-+..++.|.+.++++..
T Consensus       216 G~v~~~lL~~ll~~pff~~~pP-KStgrE~F~----~~~~~~~l~~~-----~~s~~D~~aTlt~~TA~sI~~~~~~~~~  285 (365)
T PRK09585        216 GKVDEALLARLLAHPYFALPPP-KSTGRELFN----LAWLERQLAGF-----GLSPEDVQATLTELTAASIARAVRRLPP  285 (365)
T ss_pred             CCCCHHHHHHHhcCccccCCCC-CccChhhcC----HHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            5431           1211212 111111232    11233344322     2478999999999888888888866542


Q ss_pred             HhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC-CCCCh--hHHHHHHHHHHHHHhcCCCC
Q psy9394         260 NTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK-EFCTD--NGAMIAFAGAMRIENNYKSE  323 (339)
Q Consensus       260 ~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~-~~~~D--~G~aiG~a~~~~~~~~~~~~  323 (339)
                        ..+.|+++||=+.|..|.++|.+++.   ..|..... -...|  .++++|+.+++.+. |.+.+
T Consensus       286 --~~~~vlv~GGGa~N~~Lm~~L~~~l~---~~v~~~~~~G~~~da~EA~aFA~La~~~l~-g~p~~  346 (365)
T PRK09585        286 --GPDELLVCGGGARNPTLMERLAALLP---TEVATTDALGIDGDAKEALAFAWLAVRTLR-GLPGN  346 (365)
T ss_pred             --CCCEEEEECCCcchHHHHHHHHHhcC---CcccCHHHcCCChhHHHHHHHHHHHHHHHc-CCCCC
Confidence              23579999999999999999998762   34444332 13445  67788888877644 55554

>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]

Probab=97.49  E-value=0.025  Score=52.12  Aligned_cols=73  Identities=15%  Similarity=0.188  Sum_probs=49.9

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |++||||.+...|.+.|.+.+ ++++.....-.-    .+ .-.+   .......+.+++...+.++|+++++++.+...
T Consensus         5 ~~~lGVDGGGTkt~a~l~~~~-g~vlg~g~sGpA----N~-~~~~---~e~A~~ni~~ai~~A~~~aG~~~~~i~~~~ag   75 (301)
T COG2971           5 PYFLGVDGGGTKTRAVLADED-GNVLGRGKSGPA----NI-QLVG---KEEAVRNIKDAIREALDEAGLKPDEIAAIVAG   75 (301)
T ss_pred             cEEEEEccCCcceEEEEEcCC-CcEEEEeccCCc----ee-cccc---hHHHHHHHHHHHHHHHHhcCCCHHHhCceeee
Confidence            579999999999998888855 578875311000    00 0011   13455667789999999999999998877655


Q ss_pred             CC
Q psy9394          81 RG   82 (339)
Q Consensus        81 ~g   82 (339)
                      .+
T Consensus        76 la   77 (301)
T COG2971          76 LA   77 (301)
T ss_pred             ee
Confidence            43

>TIGR02707 butyr_kinase butyrate kinase

Probab=97.31  E-value=0.086  Score=50.35  Aligned_cols=74  Identities=14%  Similarity=0.046  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh--CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHh
Q psy9394         241 GFLDAIIDVLTFKCIAALKNT--GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIEN  318 (339)
Q Consensus       241 ~~q~~l~~~l~~~~~~~~~~~--~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~  318 (339)
                      .+-+.+.+.+...+..+..-.  +.+.|+|+||++.|..+.+.+.+.++. --+|++-|   -.|.--++++.+++.++.
T Consensus       270 ~a~d~~~~~la~~Ia~l~~~l~g~pD~IV~gGGI~e~~~l~~~I~~~l~~-~a~v~~~p---g~~e~~ala~ga~rv~~~  345 (351)
T TIGR02707       270 LILDAMAYQIAKEIGKMAVVLKGKVDAIVLTGGLAYSKYFVSEIIKRVSF-IAPVLVYP---GEDEMEALAEGALRVLRG  345 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchhhcCHHHHHHHHHHHHh-hCCEEEeC---CcHHHHHHHHhHHHHhcC
Confidence            333444444444444444455  578999999999999999999888752 12455544   356666777777775443

This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=97.21  E-value=0.073  Score=48.01  Aligned_cols=48  Identities=15%  Similarity=0.245  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccC
Q psy9394         247 IDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPK  297 (339)
Q Consensus       247 ~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~  297 (339)
                      .+.+.+.+++..++.+.+.|+|+||.++...+.+.+.+.+   +.+++.+.
T Consensus       179 ~~~i~~~i~~~l~~~~~~~v~LtGG~a~ipgl~e~l~~~l---g~~v~~~~  226 (239)
T TIGR02529       179 YQKMASIVKRHIEGQGVKDLYLVGGACSFSGFADVFEKQL---GLNVIKPQ  226 (239)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECchhcchhHHHHHHHHh---CCCcccCC
Confidence            3445555666666778899999999999999999999887   67777664

>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related

Probab=97.21  E-value=0.0046  Score=53.67  Aligned_cols=77  Identities=21%  Similarity=0.194  Sum_probs=64.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNT--GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF  310 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~--~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~  310 (339)
                      ..+.++++++.+.++-.+.+.++.+.+.+  ..+.|.++||.+.|..+++.+.+.+   +.+|.+++    .+.+.++|+
T Consensus       118 ~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl---~~~V~~~~----~~e~~a~Ga  190 (198)
T PF02782_consen  118 TTRADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL---GRPVVRPE----VEEASALGA  190 (198)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH---TSEEEEES----SSTHHHHHH
T ss_pred             cCHHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh---CCceEeCC----CCchHHHHH
Confidence            45899999999999999999999887763  4679999999999999999999987   68888886    255677888


Q ss_pred             HHHHHH
Q psy9394         311 AGAMRI  316 (339)
Q Consensus       311 a~~~~~  316 (339)
                      |.+..+
T Consensus       191 A~~A~~  196 (198)
T PF02782_consen  191 ALLAAV  196 (198)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            777653

These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....

>PRK00976 hypothetical protein; Provisional

Probab=96.98  E-value=0.23  Score=46.63  Aligned_cols=68  Identities=16%  Similarity=0.178  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHhCCCeEEEEcchhhhH--HHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHH-HHHhcCCC
Q psy9394         247 IDVLTFKCIAALKNTGINKLVVVGGVGANK--QLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM-RIENNYKS  322 (339)
Q Consensus       247 ~~~l~~~~~~~~~~~~~~~v~laGGVa~N~--~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~-~~~~~~~~  322 (339)
                      .+.+...+..+.--...+.|+++|||+.+.  .+.+++.+.+..       ++..+-+|+| ++|+|.+. ..-+|++.
T Consensus       248 ~~~LA~~IAnLi~llDPe~IVLGGGVS~~~e~~L~~~I~e~l~~-------~~a~LG~dAG-aiGAA~iA~~i~~G~~~  318 (326)
T PRK00976        248 ALFVAMEIASLLLLNPEDNVVLAGSVGEMDEPDVSERIKELLDK-------KVLVLGKESA-AIGLALIARDIFNGKKD  318 (326)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCccccCchhHHHHHHHHHhcc-------cccccCCchH-HHHHHHHHHHHhCCCce
Confidence            333333333333344678999999999887  677777665521       1333445544 46766654 33455443

>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]

Probab=96.92  E-value=0.36  Score=45.11  Aligned_cols=123  Identities=19%  Similarity=0.187  Sum_probs=74.4

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHH-HHHHHHHHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAA-RTHIQTIIPLLSKLLKNSNLELKKIDIIAY   79 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~l~~~i~~~l~~~~i~~~did~ia~   79 (339)
                      |+++|||.+.+.+.+++++.. ++++...+....           .... ..-.+.+...+++++++.+ ...++-.|++
T Consensus         6 ~~~lgidIggt~i~~~l~d~~-g~~l~~~~~~~~-----------~~~~~~~~~~~i~~~i~~~~~~~~-~~~~~iGIgi   72 (314)
T COG1940           6 MTVLGIDIGGTKIKVALVDLD-GEILLRERIPTP-----------TPDPEEAILEAILALVAELLKQAQ-GRVAIIGIGI   72 (314)
T ss_pred             cEEEEEEecCCEEEEEEECCC-CcEEEEEEEecC-----------CCCchhHHHHHHHHHHHHHHHhcC-CcCceEEEEe
Confidence            689999999999999999986 678766543321           1111 2445667788888888765 2223444444


Q ss_pred             eCCCCCCchh-----------HHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCC-CCCCcEEEEEEe
Q psy9394          80 TRGPGLPGSL-----------LVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNN-SLTFPFIALLVS  137 (339)
Q Consensus        80 ~~gPG~~t~l-----------r~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~-~~~~~~~~l~~d  137 (339)
                      + +||....-           +....+.+.|....++|+.--+.-.|-|++-.+... .....++.+.++
T Consensus        73 ~-~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~Pv~veNDan~aalaE~~~g~~~~~~~~~~i~~g  141 (314)
T COG1940          73 P-GPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLGLPVFVENDANAAALAEAWFGAGRGIDDVVYITLG  141 (314)
T ss_pred             c-cceeccCCcEEeecCCCCccccccHHHHHHHHHCCCEEEecHHHHHHHHHHHhCCCCCCCCEEEEEEc
Confidence            4 57655321           112335778888899999766666665555333211 111245555554

>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.37  Score=45.62  Aligned_cols=86  Identities=14%  Similarity=0.140  Sum_probs=65.1

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEcc-CCCCCCh--hHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYP-KKEFCTD--NGAMIA  309 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~-~~~~~~D--~G~aiG  309 (339)
                      .+.+|+++.+-+..+..|++.+..  ..+..+.++++||-..|..+.++|...++  |..|.-. +.-+.+|  .+.+++
T Consensus       263 l~a~Dv~aTL~eltA~tIv~s~~~--~~~~p~~l~vcGGG~~N~llm~rLa~l~~--g~~V~~t~~~g~~gd~~EA~afA  338 (371)
T COG2377         263 LNAEDVQATLVELTAATIVKSVAT--LQGDPRRLVVCGGGRRNPLLMARLAALLE--GVEVATTDEAGLDGDAVEAEAFA  338 (371)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhh--ccCCCceeEeecCCccCHHHHHHHHHhcC--CCeeeechhcCCCcchhhHHHHH
Confidence            478999988888888888777662  24567899999999999999999998774  5555433 2346666  677788


Q ss_pred             HHHHHHHHhcCCCC
Q psy9394         310 FAGAMRIENNYKSE  323 (339)
Q Consensus       310 ~a~~~~~~~~~~~~  323 (339)
                      ++++.. ..|.+.+
T Consensus       339 ~LA~r~-l~g~P~n  351 (371)
T COG2377         339 WLAWRT-LEGLPGN  351 (371)
T ss_pred             HHHHHH-HhCCCCC
Confidence            888876 7776644

>PLN02902 pantothenate kinase

Probab=96.83  E-value=0.039  Score=57.63  Aligned_cols=189  Identities=14%  Similarity=0.140  Sum_probs=114.1

Q ss_pred             CCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccC------------C---------CCCCc
Q psy9394          72 KKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSN------------N---------SLTFP  130 (339)
Q Consensus        72 ~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s------------~---------~~~~~  130 (339)
                      .++..|.+| |=|.+       .+...+....++++..+.+++|....+.+..            +         ..-+|
T Consensus       144 ~~~~~i~aT-GGGA~-------K~~~~~~~~l~~~l~k~DEm~~li~Gl~fLl~~i~~e~f~~~~~~~~~~~~~~~~lyP  215 (876)
T PLN02902        144 NGNGVIKAT-GGGAY-------KFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGEKEFVQIDQNDLFP  215 (876)
T ss_pred             CCceEEEEe-CCccc-------cHHHHHHHHhCCCeeeecHHHHHHHHHHHHHhhCcchheeeccccccccccCccCCCc
Confidence            355667666 44655       3455666667888888888888887764320            0         01245


Q ss_pred             EEEEEEeCCeeEEEEecCCcceEEeeeccCCcchhhhHHHHhHcCC-CCCcHHHHHhccccCCCCcccCCCc-cccCCCe
Q psy9394         131 FIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDL-GYPGGPEISLISEFGDPNIYKFPRP-MLYTNNF  208 (339)
Q Consensus       131 ~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~G~~~d~va~~LG~-~~~gg~~le~lA~~g~~~~~~~~~~-l~~~~~~  208 (339)
                      ++.+- -|..+.++.+.+.++++.++.+. .+-|-|+.-+.-++|. +|+   +|-.||..|+....++-+. |+.  +.
T Consensus       216 yLLVN-IGSGVSilkV~~~~~~~RVgGTs-IGGGT~~GL~~LLtg~~sFd---Ell~LA~~Gd~~~vDllVgDIYG--g~  288 (876)
T PLN02902        216 YLLVN-IGSGVSMIKVDGDGKFERVSGTN-VGGGTYWGLGRLLTKCKSFD---ELLELSQRGDNSAIDMLVGDIYG--GM  288 (876)
T ss_pred             eEEEE-cCCceEEEEEecCCcEEEecccc-cccHhHHHHHHHHcCCCCHH---HHHHHHhcCCccccCeeeccccC--CC
Confidence            55443 35557788888777888876642 4556676665556665 354   5667898888643222111 110  00


Q ss_pred             eeecchHHH-HHHHHHHhhc---cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhh
Q psy9394         209 NFSFSGLKT-SVLNVIKNIK---LDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGAN  275 (339)
Q Consensus       209 ~~~~~~l~~-~~~~~~~~~~---~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N  275 (339)
                      ++.-.++.. .+.+-+.+..   +.....+++|||+++...+...|.+++.-..+.+++++|+++|.--.|
T Consensus       289 ~y~~~GL~~d~iASSFGKv~~~~~~~~~~s~eDiarSLL~mIs~NIGqiA~L~A~~~~ikrIvF~G~fIr~  359 (876)
T PLN02902        289 DYSKIGLSASTIASSFGKVISENKELSDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRG  359 (876)
T ss_pred             CcCCCCCCcchhhhccCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecceecC
Confidence            000001110 1111121110   011235699999999999999999999999999999999999986554

>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway

Probab=96.81  E-value=0.27  Score=46.69  Aligned_cols=203  Identities=16%  Similarity=0.210  Sum_probs=108.1

Q ss_pred             CCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccC-------------------------CC
Q psy9394          72 KKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSN-------------------------NS  126 (339)
Q Consensus        72 ~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s-------------------------~~  126 (339)
                      .....|.+|.| |.+       .+.+.+....++++....+++|.+.+..+..                         ..
T Consensus        82 ~~~~~I~aTGG-GA~-------Ky~~~~~~~Lgv~v~K~DEm~clI~Gl~fLl~~i~~E~f~y~~~~~~~~~~~~~~~~~  153 (341)
T PF03630_consen   82 QKITKICATGG-GAF-------KYADLFKEKLGVEVQKEDEMECLIKGLNFLLKNIPDEVFTYDNDEDPEKFEKVPIDNS  153 (341)
T ss_dssp             GCSSEEEEEST-THH-------HHHCHHHCTSTSEEEE--HHHHHHHHHHHHHHTTB-SEEEEETTTSTTT-EEEEETTS
T ss_pred             ccceEEEEeCC-cHH-------HHHHHHHHhcCCCeeEehHHHHHHhhHHHHHhcCCcceEEEecCCCcceecccccCCC
Confidence            35567777744 543       2344444556667777777777666522210                         00


Q ss_pred             CCCcEEEEEEeCCeeEEEEecCCcceEEeeeccCCcchhhhHHHHhHcCCC-CCcHHHHHhccccCCCCcccCC------
Q psy9394         127 LTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLG-YPGGPEISLISEFGDPNIYKFP------  199 (339)
Q Consensus       127 ~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~G~~~d~va~~LG~~-~~gg~~le~lA~~g~~~~~~~~------  199 (339)
                      ..+|++.+-+ |..+.++.+++.+.++.++.+. -.-|-|+.-+.-+.|.. |+   ++-.||..|+....++-      
T Consensus       154 ~~~Pyllvni-GsGvSi~~v~~~~~~~rvgGs~-iGGgT~~GL~~llt~~~~~~---e~~~la~~G~~~~vDllV~DIyg  228 (341)
T PF03630_consen  154 DIYPYLLVNI-GSGVSILKVEGPNQFERVGGSS-IGGGTFWGLCSLLTGCKSFD---EILELAKKGDNSNVDLLVGDIYG  228 (341)
T ss_dssp             S-SSEEEEEE-SSSEEEEEEEETTEEEEEEEES--SHHHHHHHHHHHH---SHH---HHHHHHHH--GGGTSEEHHHHHS
T ss_pred             CCCcEEEEEc-CCceEEEEEeCCCceEEEeccc-cchHhHHHHHHHhcCCCCHH---HHHHHhcCCCccccCceeeeccC
Confidence            1245554433 4456778887777877776642 34455666555555653 33   56668888875322110      


Q ss_pred             --C---ccccCCCee-eecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchh
Q psy9394         200 --R---PMLYTNNFN-FSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVG  273 (339)
Q Consensus       200 --~---~l~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa  273 (339)
                        +   ++.  .+.. -+|..+...-.        +.....++|+|+++...+...+..++.-.++.+++++|+++|.-.
T Consensus       229 ~~y~~~~L~--~~~~AssFGk~~~~~~--------~~~~~~~~Dia~sll~mv~~nIg~la~l~A~~~~~~~I~f~G~~~  298 (341)
T PF03630_consen  229 GDYNKIGLP--GDLTASSFGKVQSKAK--------RKDSFSKEDIAKSLLNMVSNNIGQLAYLHAKIHGVKRIVFGGSFI  298 (341)
T ss_dssp             S-BGGGTB---TTSEEETTCCGGSHHH--------H-CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHT--EEEEESGGG
T ss_pred             CCcccCCCC--HHHHHhhhhhhhhccc--------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccc
Confidence              0   110  1111 12222211000        012357899999999999999999999999999999999999988


Q ss_pred             hhHHH-HHHHH---HHHHhCCcEEEccC
Q psy9394         274 ANKQL-RKKLN---ILKKQYNYTVFYPK  297 (339)
Q Consensus       274 ~N~~l-~~~l~---~~l~~~~~~v~~~~  297 (339)
                      .|..+ .+.|.   +-......+.++++
T Consensus       299 ~~~~~~~~~l~~a~~~~s~~~~~~~fl~  326 (341)
T PF03630_consen  299 RNNPITMRTLSYAINFWSKGELKALFLR  326 (341)
T ss_dssp             TSSCHHHHHHHHHHHHHTTTS-EEEEET
T ss_pred             cCCHHHHHHHHHHHHHhccCCceEEEec
Confidence            76544 44444   22222345666665

CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.

>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase)

Probab=96.33  E-value=0.92  Score=42.38  Aligned_cols=120  Identities=13%  Similarity=0.167  Sum_probs=74.4

Q ss_pred             EEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCC
Q psy9394           4 LGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGP   83 (339)
Q Consensus         4 Lgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gP   83 (339)
                      +|||.+.+.+.+++++.. ++++.+.+...           + .......+.+...+++++++.++...++..|+++. |
T Consensus         1 lgidig~t~~~~~l~d~~-g~i~~~~~~~~-----------~-~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~-p   66 (318)
T TIGR00744         1 IGVDIGGTTIKLGVVDEE-GNILSKWKVPT-----------D-TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGA-P   66 (318)
T ss_pred             CEEEeCCCEEEEEEECCC-CCEEEEEEeCC-----------C-CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEec-c
Confidence            589999999999999866 57876543321           0 01233456677888899998888777888888764 5


Q ss_pred             CCCc---hh--------HHHHHHHHHHHHhcCCCEEeecchhHHhhhccccC-CCCCCcEEEEEEe
Q psy9394          84 GLPG---SL--------LVGSSIACSIALSINKPVIGINHLEGHLLSPFLSN-NSLTFPFIALLVS  137 (339)
Q Consensus        84 G~~t---~l--------r~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s-~~~~~~~~~l~~d  137 (339)
                      |...   +.        .-+..+.+.+....++|++-.+.-.+.+++-.... ......++.+.++
T Consensus        67 G~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~~~alaE~~~g~~~~~~~~~~v~ig  132 (318)
T TIGR00744        67 GPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLPVVVENDANAAALGEYKKGAGKGARDVICITLG  132 (318)
T ss_pred             ccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCCEEEechHHHHHHHHHHhcccCCCCcEEEEEeC
Confidence            5431   11        01223456677778899887776666655433211 1111345666655

This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.

>PRK05082 N-acetylmannosamine kinase; Provisional

Probab=96.30  E-value=0.9  Score=41.95  Aligned_cols=118  Identities=16%  Similarity=0.189  Sum_probs=63.5

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |.++|||.+.+.+.+++++.+ ++++...+.+.   +..           ...+.+...+..++++..   .+++.|+++
T Consensus         1 ~~~lgvdig~~~i~~~l~dl~-g~i~~~~~~~~---~~~-----------~~~~~~~~~i~~~i~~~~---~~~~~igi~   62 (291)
T PRK05082          1 MTTLAIDIGGTKIAAALVGED-GQIRQRRQIPT---PAS-----------QTPEALRQALSALVSPLQ---AQADRVAVA   62 (291)
T ss_pred             CcEEEEEECCCEEEEEEEcCC-CcEEEEEEecC---CCC-----------CCHHHHHHHHHHHHHHhh---hcCcEEEEe
Confidence            789999999999999999976 67876543321   100           001223344444444321   245677765


Q ss_pred             CCCCCCc-h---------h--HHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEe
Q psy9394          81 RGPGLPG-S---------L--LVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVS  137 (339)
Q Consensus        81 ~gPG~~t-~---------l--r~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~d  137 (339)
                      . ||.+. +         +  .-++.+.+.+...++.|++-.+.-.+-+++-+.........++.+.++
T Consensus        63 ~-pG~vd~~~~~~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig  130 (291)
T PRK05082         63 S-TGIINDGILTALNPHNLGGLLHFPLVQTLEQLTDLPTIALNDAQAAAWAEYQALPDDIRNMVFITVS  130 (291)
T ss_pred             C-cccccCCeeEEecCCCCccccCCChHHHHHHHhCCCEEEECcHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence            3 44321 0         0  112234566777789998876766655444222101111355666655

>PRK09557 fructokinase; Reviewed

Probab=96.19  E-value=0.84  Score=42.39  Aligned_cols=103  Identities=15%  Similarity=0.131  Sum_probs=57.2

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      +.||||.+.+.+.+++++.+ ++++...++..           |........+.+...+++...+.    ..+..|+++.
T Consensus         1 ~~lgidig~t~~~~~l~d~~-g~i~~~~~~~~-----------~~~~~~~~~~~i~~~i~~~~~~~----~~~~gIgi~~   64 (301)
T PRK09557          1 MRIGIDLGGTKIEVIALDDA-GEELFRKRLPT-----------PRDDYQQTIEAIATLVDMAEQAT----GQRGTVGVGI   64 (301)
T ss_pred             CEEEEEECCCcEEEEEECCC-CCEEEEEEecC-----------CCCCHHHHHHHHHHHHHHHHhhc----CCceEEEecC
Confidence            36899999999999999876 67876543321           00001122233333444444322    2345666553


Q ss_pred             CCCCCc---h--------hHHHHHHHHHHHHhcCCCEEeecchhHHhhhcc
Q psy9394          82 GPGLPG---S--------LLVGSSIACSIALSINKPVIGINHLEGHLLSPF  121 (339)
Q Consensus        82 gPG~~t---~--------lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~  121 (339)
                       ||...   |        ..-+..+.+.+...++.|++-.+.-.|.|++-+
T Consensus        65 -pG~vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~~pv~~~NDa~aaA~aE~  114 (301)
T PRK09557         65 -PGSISPYTGLVKNANSTWLNGQPLDKDLSARLNREVRLANDANCLAVSEA  114 (301)
T ss_pred             -cccCcCCCCeEEecCCccccCCCHHHHHHHHHCCCEEEccchhHHHHHHH
Confidence             55431   1        001223455677778899887777777666543

>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related

Probab=95.96  E-value=0.053  Score=48.83  Aligned_cols=77  Identities=16%  Similarity=0.183  Sum_probs=55.1

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      ++||||.++..++++|++.+ ++++...+... ....+..|... ....+-.+.+...+++++++++....+|.+|+++.
T Consensus         1 y~lgiDiGTts~K~~l~d~~-g~iv~~~~~~~-~~~~~~~g~~e-~d~~~~~~~~~~~~~~~~~~~~~~~~~I~aI~is~   77 (245)
T PF00370_consen    1 YYLGIDIGTTSVKAVLFDED-GKIVASASRPY-PYYTPEPGWAE-QDPDEIWEAICEALKELLSQAGIDPEQIKAIGISG   77 (245)
T ss_dssp             EEEEEEECSSEEEEEEEETT-SCEEEEEEEEE-TEBCSSTTEEE-E-HHHHHHHHHHHHHHHHHHCTSCGGGEEEEEEEE
T ss_pred             CEEEEEEcccceEEEEEeCC-CCEEEEEEEee-eeccccccccc-cChHHHHHHHHHHHHHHHhhcCcccceeEEEEecc
Confidence            58999999999999999977 78887654322 11222112221 13345677778899999999989889999999873

These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....

>smart00732 YqgFc Likely ribonuclease with RNase H fold

Probab=95.86  E-value=0.087  Score=40.14  Aligned_cols=88  Identities=20%  Similarity=0.220  Sum_probs=50.8

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |.+||||.+...+.+|+++.+ ++++.......   .             .....+...+..++++.     +++.|+++
T Consensus         1 ~~ilgiD~Ggt~i~~a~~d~~-g~~~~~~~~~~---~-------------~~~~~~~~~l~~~i~~~-----~~~~i~Ig   58 (99)
T smart00732        1 KRVLGLDPGRKGIGVAVVDET-GKLADPLEVIP---R-------------TNKEADAARLKKLIKKY-----QPDLIVIG   58 (99)
T ss_pred             CcEEEEccCCCeEEEEEECCC-CCEecCEEEEE---e-------------cCcchHHHHHHHHHHHh-----CCCEEEEe
Confidence            789999999999999999866 56664322111   0             01123445566666652     57788887


Q ss_pred             CCCCCCchhHH---HHHHHHHHHHhcCCCEEeec
Q psy9394          81 RGPGLPGSLLV---GSSIACSIALSINKPVIGIN  111 (339)
Q Consensus        81 ~gPG~~t~lr~---g~~~ak~la~~~~~p~~~v~  111 (339)
                       -||...|.-.   -..+.+.+....++|++-++
T Consensus        59 -~pg~v~g~~~~~~~~~l~~~l~~~~~~pv~~~n   91 (99)
T smart00732       59 -LPLNMNGTASRETEEAFAELLKERFNLPVVLVD   91 (99)
T ss_pred             -CCcCCCCCcCHHHHHHHHHHHHHhhCCcEEEEe
Confidence             5776543210   02333444444556655444

YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.

>PRK00047 glpK glycerol kinase; Provisional

Probab=95.79  E-value=0.069  Score=53.49  Aligned_cols=84  Identities=20%  Similarity=0.144  Sum_probs=67.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF  310 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~  310 (339)
                      ..+.++++++.+.++-.+...++.+.+..+  .+.|.++||.+.|..+++.+.+.+   |.+|.++.    ...+.++|+
T Consensus       372 ~~~~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~~----~~e~~a~Ga  444 (498)
T PRK00047        372 TTKEHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL---GVPVERPV----VAETTALGA  444 (498)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh---CCeeEecC----cccchHHHH
Confidence            357999999999999999999988875444  568999999999999999998876   77887665    223567898


Q ss_pred             HHHHHHHhcCCCC
Q psy9394         311 AGAMRIENNYKSE  323 (339)
Q Consensus       311 a~~~~~~~~~~~~  323 (339)
                      |.+..+..|...+
T Consensus       445 A~~A~~~~G~~~~  457 (498)
T PRK00047        445 AYLAGLAVGFWKD  457 (498)
T ss_pred             HHHHhhhcCcCCC
Confidence            8888777776554

>TIGR01312 XylB D-xylulose kinase

Probab=95.75  E-value=0.073  Score=52.91  Aligned_cols=83  Identities=18%  Similarity=0.185  Sum_probs=66.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHH
Q psy9394         234 EKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFA  311 (339)
Q Consensus       234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a  311 (339)
                      .++++++++.+.++-.+...++.+.+..+  .+.|.++||.+.|..+++.+.+.+   |.+|.+++    ...+.++|+|
T Consensus       360 ~~~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~---g~pv~~~~----~~e~~a~GaA  432 (481)
T TIGR01312       360 TRADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF---GTPVDVPE----GEEGPALGAA  432 (481)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHh---CCceeecC----CCcchHHHHH
Confidence            48899999999999999998887765433  478999999999999999998876   67777765    2235678888


Q ss_pred             HHHHHHhcCCCC
Q psy9394         312 GAMRIENNYKSE  323 (339)
Q Consensus       312 ~~~~~~~~~~~~  323 (339)
                      .+..+..|.+.+
T Consensus       433 ~~a~~~~g~~~~  444 (481)
T TIGR01312       433 ILAAWALGEKDL  444 (481)
T ss_pred             HHHHHhcCCCCC
Confidence            888777776555

D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.

>PTZ00294 glycerol kinase-like protein; Provisional

Probab=95.69  E-value=0.081  Score=53.07  Aligned_cols=84  Identities=21%  Similarity=0.173  Sum_probs=66.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF  310 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~  310 (339)
                      ..+.++++++.+.++-.+...++.+.+..|  .+.|.++||-+.|..+++.+.+.+   |.+|.++..    ..+.++|+
T Consensus       375 ~~~~~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~---g~pV~~~~~----~e~~alGa  447 (504)
T PTZ00294        375 TTRAHIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL---GKDIVVPEM----AETTALGA  447 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh---CCceEecCc----ccchHHHH
Confidence            358899999999999999888888765444  568999999999999999988876   778877752    22457788


Q ss_pred             HHHHHHHhcCCCC
Q psy9394         311 AGAMRIENNYKSE  323 (339)
Q Consensus       311 a~~~~~~~~~~~~  323 (339)
                      |.+..+-.|...+
T Consensus       448 Al~aa~a~G~~~~  460 (504)
T PTZ00294        448 ALLAGLAVGVWKS  460 (504)
T ss_pred             HHHHHhhcCccCC
Confidence            8887777776554

>PRK13310 N-acetyl-D-glucosamine kinase; Provisional

Probab=95.63  E-value=1.9  Score=40.05  Aligned_cols=72  Identities=14%  Similarity=0.058  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcE------EEccCCCCCChhHHHHHHHHH
Q psy9394         240 RGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYT------VFYPKKEFCTDNGAMIAFAGA  313 (339)
Q Consensus       240 a~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~------v~~~~~~~~~D~G~aiG~a~~  313 (339)
                      ..+.+...+.+...+..+..-...+.|++.||++....+.+.+.+.+.+.-+.      +...   ..++.+..+|++..
T Consensus       223 ~~~~~~~~~~la~~l~n~~~~ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s---~~~~~a~~~GAa~~  299 (303)
T PRK13310        223 VAHVERYLDLLAICLGNILTIVDPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKA---RHGDAGGVRGAAFL  299 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEc---ccCchHHHHhHHHH
Confidence            33344444455555555555667889999999987777777777777543221      1111   24455567787765


Q ss_pred             H
Q psy9394         314 M  314 (339)
Q Consensus       314 ~  314 (339)
                      .
T Consensus       300 ~  300 (303)
T PRK13310        300 H  300 (303)
T ss_pred             h
Confidence            4

>PRK15027 xylulokinase; Provisional

Probab=95.40  E-value=0.11  Score=51.74  Aligned_cols=83  Identities=18%  Similarity=0.201  Sum_probs=66.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHH
Q psy9394         234 EKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFA  311 (339)
Q Consensus       234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a  311 (339)
                      .+.++++++.+.++-.+...++.+.+ .+  .+.|.++||.+.|..+++.+.+.+   |.+|.+++   ..+.+.++|+|
T Consensus       357 ~~~~l~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pv~~~~---~~~~~~a~GaA  429 (484)
T PRK15027        357 GPNELARAVLEGVGYALADGMDVVHA-CGIKPQSVTLIGGGARSEYWRQMLADIS---GQQLDYRT---GGDVGPALGAA  429 (484)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccEEEEeCcccCCHHHHHHHHHHh---CCeEEeec---CCCcchHHHHH
Confidence            58999999999999999888887754 34  468999999999999999998876   77776554   23335688988


Q ss_pred             HHHHHHhcCCCC
Q psy9394         312 GAMRIENNYKSE  323 (339)
Q Consensus       312 ~~~~~~~~~~~~  323 (339)
                      .+..+..|...+
T Consensus       430 ~lA~~~~G~~~~  441 (484)
T PRK15027        430 RLAQIAANPEKS  441 (484)
T ss_pred             HHHHHhcCCcCC
Confidence            888887777665

>PRK09698 D-allose kinase; Provisional

Probab=95.35  E-value=2.3  Score=39.36  Aligned_cols=102  Identities=20%  Similarity=0.195  Sum_probs=64.0

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      .++|||.+...+.+++++.+ ++++.+.+....    ..    .   .....+.+...++.++++.+   .++..|+++.
T Consensus         5 ~~lgidig~t~i~~~l~d~~-g~i~~~~~~~~~----~~----~---~~~~~~~l~~~i~~~~~~~~---~~i~gigia~   69 (302)
T PRK09698          5 VVLGIDMGGTHIRFCLVDAE-GEILHCEKKRTA----EV----I---APDLVSGLGEMIDEYLRRFN---ARCHGIVMGF   69 (302)
T ss_pred             EEEEEEcCCcEEEEEEEcCC-CCEEEEEEeCCc----cc----c---chHHHHHHHHHHHHHHHHcC---CCeeEEEEeC
Confidence            57999999999999999876 678876543210    00    0   11125556677888888764   3677777653


Q ss_pred             CCCCCc---h-------h----HHHHHHHHHHHHhcCCCEEeecchhHHhhh
Q psy9394          82 GPGLPG---S-------L----LVGSSIACSIALSINKPVIGINHLEGHLLS  119 (339)
Q Consensus        82 gPG~~t---~-------l----r~g~~~ak~la~~~~~p~~~v~h~~aHa~s  119 (339)
                       ||.+.   +       +    .-+..+.+.|....++|++-.+.-.+.+++
T Consensus        70 -pG~vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~~pv~v~NDa~aaa~~  120 (302)
T PRK09698         70 -PALVSKDRRTVISTPNLPLTALDLYDLADKLENTLNCPVFFSRDVNLQLLW  120 (302)
T ss_pred             -CcceeCCCCEEEecCCCCccccccCCHHHHHHHHhCCCEEEcchHhHHHHH
Confidence             44331   1       0    112234566777789998877766665544

>TIGR01311 glycerol_kin glycerol kinase

Probab=95.32  E-value=0.13  Score=51.48  Aligned_cols=84  Identities=30%  Similarity=0.239  Sum_probs=67.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF  310 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~  310 (339)
                      ..+.++++++.+.++-.+...++.+.+..+  .+.|.++||-+.|..+++.+.+.+   |..|.++..    ..+.++|+
T Consensus       368 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~---g~pv~~~~~----~e~~alGa  440 (493)
T TIGR01311       368 TTKAHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADIL---GVPVVRPKV----TETTALGA  440 (493)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhc---CCeeEecCC----CcchHHHH
Confidence            358999999999999999999888865434  578999999999999999998876   778877542    23467888


Q ss_pred             HHHHHHHhcCCCC
Q psy9394         311 AGAMRIENNYKSE  323 (339)
Q Consensus       311 a~~~~~~~~~~~~  323 (339)
                      |.+..+..|.+.+
T Consensus       441 A~~a~~~~G~~~~  453 (493)
T TIGR01311       441 AYAAGLAVGYWKS  453 (493)
T ss_pred             HHHHHhhcCcCCC
Confidence            8888777776655

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.

>TIGR01314 gntK_FGGY gluconate kinase, FGGY type

Probab=95.28  E-value=0.12  Score=51.77  Aligned_cols=83  Identities=14%  Similarity=0.201  Sum_probs=65.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHH
Q psy9394         234 EKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFA  311 (339)
Q Consensus       234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a  311 (339)
                      .+.++++++.+.++-.+...++.+.+..+  ++.|.++||.+.|..+++.+.+.+   |.+|.++..    ..+.++|+|
T Consensus       371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pv~~~~~----~e~~a~GaA  443 (505)
T TIGR01314       371 KKEHMIRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVWRQMMSDIF---EQEIVVPES----YESSCLGAC  443 (505)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHHHHHHHHHc---CCeeEecCC----CCcchHHHH
Confidence            47899999999999988888777766444  578999999999999999988876   778877652    124577888


Q ss_pred             HHHHHHhcCCCC
Q psy9394         312 GAMRIENNYKSE  323 (339)
Q Consensus       312 ~~~~~~~~~~~~  323 (339)
                      .+..+..|...+
T Consensus       444 ~la~~~~G~~~~  455 (505)
T TIGR01314       444 ILGLKALGLIED  455 (505)
T ss_pred             HHHHHhcCccCC
Confidence            877777776544

Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.

>PRK10331 L-fuculokinase; Provisional

Probab=95.26  E-value=0.14  Score=50.94  Aligned_cols=84  Identities=13%  Similarity=0.029  Sum_probs=66.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNT--GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF  310 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~--~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~  310 (339)
                      ..+.++++++.+.++-.+.+.++.+.+..  ..+.|.++||.+.|..+++.+.+.+   |..|.++.    ...+.++|+
T Consensus       358 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl---g~pV~~~~----~~e~~a~Ga  430 (470)
T PRK10331        358 TTRGHFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML---DIPIKVLD----DAETTVAGA  430 (470)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc---CCeeEecC----cccchHHHH
Confidence            35899999999999999988888886643  3678999999999999999988876   77887665    223567888


Q ss_pred             HHHHHHHhcCCCC
Q psy9394         311 AGAMRIENNYKSE  323 (339)
Q Consensus       311 a~~~~~~~~~~~~  323 (339)
                      |.+..+-.|...+
T Consensus       431 A~la~~~~G~~~~  443 (470)
T PRK10331        431 AMFGWYGVGEFSS  443 (470)
T ss_pred             HHHHHHhcCCCCC
Confidence            8887777776555

>PRK10640 rhaB rhamnulokinase; Provisional

Probab=95.18  E-value=0.21  Score=49.73  Aligned_cols=83  Identities=16%  Similarity=0.132  Sum_probs=66.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF  310 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~  310 (339)
                      ..+.++++++.+.++-.+...++.+.+..+  .+.|.++||.+.|..+++.+.+.+   |..|..++    . .+.++|+
T Consensus       344 ~~~~~l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~~----~-ea~alGa  415 (471)
T PRK10640        344 ESDAELARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADAC---GIRVIAGP----V-EASTLGN  415 (471)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHHHHHHHh---CCCeeeCC----h-hHHHHHH
Confidence            378999999999999999998888876544  468999999999999999998887   67774433    2 3567888


Q ss_pred             HHHHHHHhcCCCC
Q psy9394         311 AGAMRIENNYKSE  323 (339)
Q Consensus       311 a~~~~~~~~~~~~  323 (339)
                      +....+..|...+
T Consensus       416 a~~a~~a~G~~~~  428 (471)
T PRK10640        416 IGIQLMTLDELNN  428 (471)
T ss_pred             HHHHHHHcCCcCC
Confidence            8888777776555

>KOG2201|consensus

Probab=95.17  E-value=0.8  Score=42.71  Aligned_cols=192  Identities=15%  Similarity=0.184  Sum_probs=109.2

Q ss_pred             EEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhcccc-C-----------C----------C---CCCcE
Q psy9394          77 IAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLS-N-----------N----------S---LTFPF  131 (339)
Q Consensus        77 ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~-s-----------~----------~---~~~~~  131 (339)
                      +.+..|-|.|       .+.+-+....++++.....+.+.+....+. +           +          +   .-+|+
T Consensus       104 ~i~aTGGGA~-------Kf~d~~~~~l~v~l~k~Dem~~LI~G~~f~l~~i~~E~fty~~~~~~~~~~~~~~~~d~~yPy  176 (371)
T KOG2201|consen  104 VICATGGGAY-------KFEDLFREILDVKLDKEDEMDCLIKGLNFLLSNIPAECFTYENDEDEEVEFQTNFCLDSPYPY  176 (371)
T ss_pred             EEEEeCCcce-------eHHHHHHHHhCceEeehhHHHHHHhhhHHHHhcCccceEEEecCCCcceecccCCccCCCCce
Confidence            3444465665       244555555666666666666666543221 0           0          0   01455


Q ss_pred             EEEEEeCCeeEEEEecCCcceEEeeeccCCcchhhhHHHHhHcCC-CCCcHHHHHhccccCCCCccc-CCCccccCCCee
Q psy9394         132 IALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDL-GYPGGPEISLISEFGDPNIYK-FPRPMLYTNNFN  209 (339)
Q Consensus       132 ~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~G~~~d~va~~LG~-~~~gg~~le~lA~~g~~~~~~-~~~~l~~~~~~~  209 (339)
                      +.|-+ |....++.+.+.++++.++.+- -.-|-|+.-.+-+-|- +|+   +|..||..|++...+ +-..++   +.+
T Consensus       177 LLVNI-GSGVSIlkV~~~~~feRvgGsS-lGGGTf~GL~~LLTg~~sfd---E~LelA~~Gd~~~vD~LV~DIY---Gg~  248 (371)
T KOG2201|consen  177 LLVNI-GSGVSILKVDGPDNFERVGGSS-LGGGTFLGLGSLLTGCKSFD---ELLELASRGDNRNVDMLVRDIY---GGD  248 (371)
T ss_pred             EEEEc-CCCeEEEEEecCCceeEecccc-cCCcchhhhHhHhcCCCCHH---HHHHHHhcCCCchhhhhhhhcc---Ccc
Confidence            44333 4456788888888898776531 2335566654444444 355   566699999864221 111111   111


Q ss_pred             eecchHH-HHHHHHHHhh-c-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHH
Q psy9394         210 FSFSGLK-TSVLNVIKNI-K-LDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLN  283 (339)
Q Consensus       210 ~~~~~l~-~~~~~~~~~~-~-~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~  283 (339)
                      .+--+|. +.+.+-+.+. . ..+...+++|||.+.-..+.+-|-+++.-.....++++|++.|=--.|.....++.
T Consensus       249 y~~fGL~~~~iASSFGk~~~~eK~~~~s~eDia~SlL~mIsnNIGqiAyl~A~~~ni~rV~FgG~fiR~~~itM~tL  325 (371)
T KOG2201|consen  249 YSRFGLKGDLIASSFGKVIRKEKELSVSKEDIARSLLRMISNNIGQIAYLCALNENIKRVYFGGFFIRGHPITMKTL  325 (371)
T ss_pred             HhhcCCChhHHHHHHHHHhhcccccccChHHHHHHHHHHHHhhHHHHHHHHHHHhCccEEEEeeeEEecCceehHHH
Confidence            1111121 1122222211 1 12345789999999999999999999998888999999999887656655544443

>COG3426 Butyrate kinase [Energy production and conversion]

Probab=94.97  E-value=2.9  Score=38.39  Aligned_cols=96  Identities=21%  Similarity=0.257  Sum_probs=58.5

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHH-HHHHH---HHHHHHHHHhCCCCCCCcCEE
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAART-HIQTI---IPLLSKLLKNSNLELKKIDII   77 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~l---~~~i~~~l~~~~i~~~did~i   77 (339)
                      .+|-|+-++..++++++++. + .++++.++    |+.     .+....+ ..+++   .+.+.+.+++.|.+++++|+|
T Consensus         4 riltINPGststKlaVfe~e-k-~ife~tlr----hs~-----eEl~~f~~i~dQ~~fR~~~i~~~i~e~g~~i~~~dAv   72 (358)
T COG3426           4 RILTINPGSTSTKLAVFEDE-K-EIFEKTLR----HSL-----EELEKFKRIPDQFEFRKDAILEFIDEQGYNISKFDAV   72 (358)
T ss_pred             eEEEecCCCccceEEEecCc-h-HhhHHHhh----cCH-----HHHHHHhhhhHhHhHHHHHHHHHHHHhCCCcCCccce
Confidence            47999999999999999987 4 55543221    110     1111111 11121   257888899999999999999


Q ss_pred             EEeCC-----CCC-C--c---------------hhHHHHHHHHHHHHhcCCCEE
Q psy9394          78 AYTRG-----PGL-P--G---------------SLLVGSSIACSIALSINKPVI  108 (339)
Q Consensus        78 a~~~g-----PG~-~--t---------------~lr~g~~~ak~la~~~~~p~~  108 (339)
                      +--.|     ||- |  +               .-.+|...|..++..+++|-+
T Consensus        73 vgRGGLL~pi~gGTY~Vn~~M~~~lk~~~~G~haSnLGaiiA~~ia~~~gvPay  126 (358)
T COG3426          73 VGRGGLLRPIPGGTYVVNEKMLKDLKNGVQGEHASNLGAIIANRIAKALGVPAY  126 (358)
T ss_pred             eecCccccccCCceeEeCHHHHHHHHcCCCCcchhhhhHHHHHHHhhhcCCCee
Confidence            74322     221 1  0               123555567788888887744

>TIGR02628 fuculo_kin_coli L-fuculokinase

Probab=94.82  E-value=0.2  Score=49.79  Aligned_cols=83  Identities=13%  Similarity=0.030  Sum_probs=66.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHH
Q psy9394         234 EKANIARGFLDAIIDVLTFKCIAALKNT--GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFA  311 (339)
Q Consensus       234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~--~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a  311 (339)
                      .+.++++++.+.++-.+.+.++.+.+..  ..+.|.++||-+.|..+++.+.+.+   |.+|.++.    +..+.++|+|
T Consensus       363 ~~~~l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Adv~---g~pV~~~~----~~e~~~lGaA  435 (465)
T TIGR02628       363 TRGHIYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGGSKNTLWNQIRANML---DIPVKVVD----DAETTVAGAA  435 (465)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccCCHHHHHHhhhhc---CCeeEecc----CCcchHHHHH
Confidence            5789999999999999988888876542  3578999999999999999888776   67777665    2235678988


Q ss_pred             HHHHHHhcCCCC
Q psy9394         312 GAMRIENNYKSE  323 (339)
Q Consensus       312 ~~~~~~~~~~~~  323 (339)
                      ....+..|...+
T Consensus       436 ~~a~~a~G~~~~  447 (465)
T TIGR02628       436 MFGFYGVGEYNS  447 (465)
T ss_pred             HHHHHhcCccCC
Confidence            888888876555

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=94.81  E-value=4.8  Score=41.53  Aligned_cols=65  Identities=22%  Similarity=0.255  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhC-----CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         250 LTFKCIAALKNTG-----INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       250 l~~~~~~~~~~~~-----~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      +.+.++++.++.+     ++.|+|+||.+.-..+++.+.+.+.   ..++.+   ...|..+|.|+|.+.....+.
T Consensus       311 ~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg---~~~~~~---~npdeaVA~GAAi~a~~l~~~  380 (616)
T PRK05183        311 TLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFG---RTPLTS---IDPDKVVAIGAAIQADILAGN  380 (616)
T ss_pred             HHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhc---cCcCcC---CCchHHHHHHHHHHHHHhccc
Confidence            3444555555543     5689999999999999999988763   322222   456889999999988776664

>PTZ00297 pantothenate kinase; Provisional

Probab=94.65  E-value=2.1  Score=48.43  Aligned_cols=65  Identities=17%  Similarity=0.246  Sum_probs=50.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc-hhhhHHHHHHHHHHHHh--C-CcEEEccC
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGG-VGANKQLRKKLNILKKQ--Y-NYTVFYPK  297 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGG-Va~N~~l~~~l~~~l~~--~-~~~v~~~~  297 (339)
                      .+.+|||+++...+.+.|-+++--..+.+++++|+|+|+ +--|......|.....-  + ..+.++.+
T Consensus      1362 ~~~~Di~~sll~~is~nIgqia~l~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~ 1430 (1452)
T PTZ00297       1362 ASAIDIVRSLLNMISSNVTQLAYLHSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLE 1430 (1452)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEec
Confidence            468999999999999999999999999999999999999 66677766666544322  2 34555554

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=94.42  E-value=4.1  Score=41.62  Aligned_cols=52  Identities=17%  Similarity=0.148  Sum_probs=40.3

Q ss_pred             CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhc
Q psy9394         262 GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENN  319 (339)
Q Consensus       262 ~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~  319 (339)
                      .++.|+|.||.+.-..+.+.|.+.+   +..+..+   ...|.+++.|+|.+....++
T Consensus       328 ~i~~V~lvGG~sr~p~v~~~l~~~f---~~~~~~~---~~p~~aVA~GAa~~a~~~~~  379 (602)
T PF00012_consen  328 DIDSVLLVGGSSRIPYVQEALKELF---GKKISKS---VNPDEAVARGAALYAAILSG  379 (602)
T ss_dssp             GESEEEEESGGGGSHHHHHHHHHHT---TSEEB-S---S-TTTHHHHHHHHHHHHHHT
T ss_pred             ccceeEEecCcccchhhhhhhhhcc---ccccccc---cccccccccccccchhhhcc
Confidence            4679999999999999999998876   3344333   24588899999998877776

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>PRK10939 autoinducer-2 (AI-2) kinase; Provisional

Probab=94.34  E-value=0.27  Score=49.51  Aligned_cols=83  Identities=19%  Similarity=0.155  Sum_probs=63.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHH
Q psy9394         234 EKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFA  311 (339)
Q Consensus       234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a  311 (339)
                      .+.++++++.+.++-.+...++.+.+..+  ++.|.++||.+.|..+++.+.+.+   |.+|.+++.   .+ +.++|+|
T Consensus       379 ~~~~~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~~~---~e-~~alGaA  451 (520)
T PRK10939        379 NKATLFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILADVT---GLPVKVPVV---KE-ATALGCA  451 (520)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHHHHHHHHhc---CCeeEEecc---cC-chHHHHH
Confidence            46899999999999888888887765334  468999999999999999888876   778877762   22 3567777


Q ss_pred             HHHHHHhcCCCC
Q psy9394         312 GAMRIENNYKSE  323 (339)
Q Consensus       312 ~~~~~~~~~~~~  323 (339)
                      .+.....|...+
T Consensus       452 ~lA~~~~G~~~~  463 (520)
T PRK10939        452 IAAGVGAGIYSS  463 (520)
T ss_pred             HHHHHHhCCCCC
Confidence            777666665443

>PLN02295 glycerol kinase

Probab=94.29  E-value=0.33  Score=48.86  Aligned_cols=84  Identities=26%  Similarity=0.192  Sum_probs=64.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHH-----h--CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKN-----T--GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNG  305 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~-----~--~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G  305 (339)
                      ..+.++++++.+.++-.+.+.++.+.+.     +  ..+.|.++||.+.|..+++.+.+.+   |.+|.++.    ...+
T Consensus       376 ~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~---g~pV~~~~----~~e~  448 (512)
T PLN02295        376 TNKAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL---GSPVVRPA----DIET  448 (512)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc---CCceEecC----cccc
Confidence            3589999999999999998888887654     1  2568999999999999999998876   67787665    2235


Q ss_pred             HHHHHHHHHHHHhcCCCC
Q psy9394         306 AMIAFAGAMRIENNYKSE  323 (339)
Q Consensus       306 ~aiG~a~~~~~~~~~~~~  323 (339)
                      .++|+|.+...-.|...+
T Consensus       449 ~alGaA~~A~~~~G~~~~  466 (512)
T PLN02295        449 TALGAAYAAGLAVGLWTE  466 (512)
T ss_pred             HHHHHHHHHHhhcCcCCC
Confidence            677877777666665443

>PRK04123 ribulokinase; Provisional

Probab=94.21  E-value=0.29  Score=49.70  Aligned_cols=82  Identities=13%  Similarity=0.122  Sum_probs=63.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcch-hhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394         234 EKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGV-GANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF  310 (339)
Q Consensus       234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGV-a~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~  310 (339)
                      .+.++++++.+.++-.+.+.++.+.+ .+  ++.|.++||. +.|..+++.+.+.+   |..|.++..    ..+.++|+
T Consensus       409 ~~~~l~RAvlEgia~~~~~~~e~l~~-~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~---g~pV~~~~~----~e~~alGa  480 (548)
T PRK04123        409 DAPDIYRALIEATAFGTRAIMECFED-QGVPVEEVIAAGGIARKNPVLMQIYADVL---NRPIQVVAS----DQCPALGA  480 (548)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcceEEEeCCCcccCHHHHHHHHHhc---CCceEecCc----cccchHHH
Confidence            57899999999999888888887765 44  4689999999 99999999888876   677766652    23457788


Q ss_pred             HHHHHHHhcCCCC
Q psy9394         311 AGAMRIENNYKSE  323 (339)
Q Consensus       311 a~~~~~~~~~~~~  323 (339)
                      |....+..|...+
T Consensus       481 A~lA~~~~G~~~~  493 (548)
T PRK04123        481 AIFAAVAAGAYPD  493 (548)
T ss_pred             HHHHHHHhccCCC
Confidence            8777776665544

>TIGR02627 rhamnulo_kin rhamnulokinase

Probab=94.04  E-value=0.48  Score=46.83  Aligned_cols=83  Identities=17%  Similarity=0.163  Sum_probs=66.1

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF  310 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~  310 (339)
                      ..+.++.+++.+.++-.+.+.++.+.+..+  ++.|.++||-+.|..+++.+.+.+   |.+|..+    . ..+.++|+
T Consensus       356 ~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~----~-~e~~a~Ga  427 (454)
T TIGR02627       356 ESDAELARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAFLNQLCADAC---GIRVIAG----P-VEASTLGN  427 (454)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECChhhhHHHHHHHHHHh---CCceEcC----C-chHHHHHH
Confidence            357899999999999988888888866433  578999999999999999998877   6777432    2 23568999


Q ss_pred             HHHHHHHhcCCCC
Q psy9394         311 AGAMRIENNYKSE  323 (339)
Q Consensus       311 a~~~~~~~~~~~~  323 (339)
                      +.+..+-.|...+
T Consensus       428 A~~a~~~~G~~~~  440 (454)
T TIGR02627       428 IGVQLMALDEIND  440 (454)
T ss_pred             HHHHHHhcCCcCC
Confidence            9988888887666

This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.

>TIGR01234 L-ribulokinase L-ribulokinase

Probab=93.89  E-value=0.45  Score=48.18  Aligned_cols=83  Identities=11%  Similarity=0.125  Sum_probs=64.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcch-hhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGV-GANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIA  309 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGV-a~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG  309 (339)
                      ..+.++++++.+.++-.+...++.+.+ .|  ++.|.++||. +.|..+++.+.+.+   |..|.++..   .+ +.++|
T Consensus       405 ~~~~~~~RAvlEgia~~~~~~l~~l~~-~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~---g~pV~~~~~---~e-~~a~G  476 (536)
T TIGR01234       405 TDAPLLYRALIEATAFGTRMIMETFTD-SGVPVEELMAAGGIARKNPVIMQIYADVT---NRPLQIVAS---DQ-APALG  476 (536)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcceEEEeCCccccCHHHHHHHHHhh---CCeeEeccC---Cc-chhHH
Confidence            357899999999999888888877754 44  4789999999 99999999888876   778877752   23 45788


Q ss_pred             HHHHHHHHhcCCCC
Q psy9394         310 FAGAMRIENNYKSE  323 (339)
Q Consensus       310 ~a~~~~~~~~~~~~  323 (339)
                      +|.+..+..|...+
T Consensus       477 aA~lA~~~~G~~~~  490 (536)
T TIGR01234       477 AAIFAAVAAGVYAD  490 (536)
T ss_pred             HHHHHHHHcCCcCC
Confidence            88877777776544

This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.

>PLN02295 glycerol kinase

Probab=93.84  E-value=0.27  Score=49.40  Aligned_cols=77  Identities=12%  Similarity=0.170  Sum_probs=53.9

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCC----cCEE
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKK----IDII   77 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~d----id~i   77 (339)
                      .+||||.+|..++++|++.+ +++++...... ..+.+..|.... ....-++.+...++.++++++.++.+    |.+|
T Consensus         1 ~vlgID~GTts~Ka~l~d~~-G~~~~~~~~~~-~~~~~~~G~~Eq-dp~~~w~~~~~~i~~~~~~~~~~~~~i~~~i~aI   77 (512)
T PLN02295          1 FVGAIDQGTTSTRFIIYDRD-ARPVASHQVEF-TQIYPQAGWVEH-DPMEILESVLTCIAKALEKAAAKGHNVDSGLKAI   77 (512)
T ss_pred             CEEEEecCCCceEEEEECCC-CCEEEEEeecc-cccCCCCCcEee-CHHHHHHHHHHHHHHHHHHcCCCccccccceEEE
Confidence            47999999999999999876 68887543221 222333344322 23345667778899999998888777    6888


Q ss_pred             EEeC
Q psy9394          78 AYTR   81 (339)
Q Consensus        78 a~~~   81 (339)
                      +++.
T Consensus        78 g~s~   81 (512)
T PLN02295         78 GITN   81 (512)
T ss_pred             EEec
Confidence            8764

>COG0554 GlpK Glycerol kinase [Energy production and conversion]

Probab=93.83  E-value=0.18  Score=49.34  Aligned_cols=84  Identities=23%  Similarity=0.173  Sum_probs=71.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF  310 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~  310 (339)
                      ..+++|+.++-++++-...++++...+..+  ...+=+-||...|..|.+...+.+   +.+|..|.    .....++|+
T Consensus       371 t~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil---g~~V~Rp~----~~EtTAlGa  443 (499)
T COG0554         371 TTKAHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL---GVPVERPV----VLETTALGA  443 (499)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh---CCeeeccc----cchhhHHHH
Confidence            358999999999999999999998888877  578999999999999999999887   77887776    455688899


Q ss_pred             HHHHHHHhcCCCC
Q psy9394         311 AGAMRIENNYKSE  323 (339)
Q Consensus       311 a~~~~~~~~~~~~  323 (339)
                      |..+-+..|+-.+
T Consensus       444 A~lAGla~G~w~~  456 (499)
T COG0554         444 AYLAGLAVGFWKD  456 (499)
T ss_pred             HHHHhhhhCcCCC
Confidence            8888888887655

>COG0554 GlpK Glycerol kinase [Energy production and conversion]

Probab=93.67  E-value=0.45  Score=46.66  Aligned_cols=76  Identities=18%  Similarity=0.180  Sum_probs=57.0

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEE--EEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEE
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSH--VICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIA   78 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~--~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia   78 (339)
                      ++||+||-++..+-+.+++.+ +++++.  +.++|   |-|..|.++... ..-++.....++.++.++++++.+|.+|+
T Consensus         5 ~yIlAiDqGTTssRaivfd~~-g~iva~~q~e~~Q---~yP~~GWVEhDp-~eIw~~~~~~l~~a~~~~~i~~~~iaaIG   79 (499)
T COG0554           5 KYILAIDQGTTSSRAIVFDED-GNIVAIAQREFTQ---IYPQPGWVEHDP-LEIWASVRSVLKEALAKAGIKPGEIAAIG   79 (499)
T ss_pred             cEEEEEecCCcceeEEEECCC-CCchhhhhhhhhh---hCCCCCccccCH-HHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence            479999999999999999877 678863  22222   234457666532 34556666789999999999999999999


Q ss_pred             EeC
Q psy9394          79 YTR   81 (339)
Q Consensus        79 ~~~   81 (339)
                      ++.
T Consensus        80 ITN   82 (499)
T COG0554          80 ITN   82 (499)
T ss_pred             eec
Confidence            874

>KOG2517|consensus

Probab=93.67  E-value=0.48  Score=47.13  Aligned_cols=81  Identities=21%  Similarity=0.172  Sum_probs=64.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNT--GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF  310 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~--~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~  310 (339)
                      .+.++||.++.++++=...+++....+..  +++++-+.||.+.|..+.+.+.+.+   |..+..|+.   -|. .++|+
T Consensus       383 ts~~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~---g~pv~~p~~---~e~-~~~Ga  455 (516)
T KOG2517|consen  383 TSKEHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL---GLPVVRPQD---VEA-VALGA  455 (516)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh---CCccccccc---hhH-HHHHH
Confidence            46899999999999988888888777665  5789999999999999999988876   777777763   444 66777


Q ss_pred             HHHHHHHhcC
Q psy9394         311 AGAMRIENNY  320 (339)
Q Consensus       311 a~~~~~~~~~  320 (339)
                      |......+|.
T Consensus       456 A~l~~~a~~~  465 (516)
T KOG2517|consen  456 AMLAGAASGK  465 (516)
T ss_pred             HHHHHhhcCC
Confidence            7766666665

>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase

Probab=93.58  E-value=0.68  Score=46.94  Aligned_cols=80  Identities=15%  Similarity=0.057  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHH
Q psy9394         236 ANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGA  313 (339)
Q Consensus       236 ~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~  313 (339)
                      .++.+++.+.++-.+.+.++.+.+ .+  ++.|.++||.+.|..+++.+-+.+   +.+|.++.   .. .+.++|+|..
T Consensus       416 ~~~~rAvlEgiaf~~r~~~e~l~~-~g~~~~~i~~~GGga~s~~w~Qi~ADvl---g~pV~~~~---~~-e~~alGaA~l  487 (541)
T TIGR01315       416 ALLYYATMEFIAYGTRQIVEAMNT-AGHTIKSIFMSGGQCQNPLLMQLIADAC---DMPVLIPY---VN-EAVLHGAAML  487 (541)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-cCCCccEEEEecCcccCHHHHHHHHHHH---CCeeEecC---hh-HHHHHHHHHH
Confidence            678899999998888888887754 34  568999999999999999998887   77887765   23 3567888888


Q ss_pred             HHHHhcCCCC
Q psy9394         314 MRIENNYKSE  323 (339)
Q Consensus       314 ~~~~~~~~~~  323 (339)
                      ...-.|...+
T Consensus       488 A~~~~G~~~~  497 (541)
T TIGR01315       488 GAKAAGTTES  497 (541)
T ss_pred             HHHhcCccCC
Confidence            7766665443

This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.

>PRK13410 molecular chaperone DnaK; Provisional

Probab=93.55  E-value=11  Score=39.39  Aligned_cols=66  Identities=21%  Similarity=0.160  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHhC-----CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         249 VLTFKCIAALKNTG-----INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       249 ~l~~~~~~~~~~~~-----~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      .+...++++++..+     +..|+|+||.+.-..+.+.+.+.+   +..+..   ....|.+++.|+|.+..+.++.
T Consensus       310 r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f---g~~~~~---~~npdeaVA~GAAi~aa~ls~~  380 (668)
T PRK13410        310 RLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI---PREPNQ---NVNPDEVVAVGAAIQAGILAGE  380 (668)
T ss_pred             HHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc---CCCccc---CCCCchHHHHhHHHHHHhhccc
Confidence            34444455554443     569999999999999999998865   332221   1345789999999988777764

>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase

Probab=93.39  E-value=0.36  Score=48.94  Aligned_cols=76  Identities=11%  Similarity=0.182  Sum_probs=53.1

Q ss_pred             EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      +||||.++..++++|++.+ +++++..... .+.+.+..|.... ....-.+.+...+++++++++++.++|..|+++.
T Consensus         2 ~lgID~GTts~Ka~l~d~~-G~i~~~~~~~-~~~~~~~~g~~eq-dp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~   77 (541)
T TIGR01315         2 YIGVDVGTGSARACIIDST-GDILALAAQN-IKTWTPSSGLEGQ-SSVYIWQAICNCVKQVLAESKVDPNSVKGIGFDA   77 (541)
T ss_pred             EEEEEecCcCEEEEEEcCC-CCEEEEEEee-eeeccCCCCcccC-CHHHHHHHHHHHHHHHHHHcCCChhheEEEEecc
Confidence            7999999999999999876 6888764321 1222222233221 2233456677888999999888888899999885

This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.

>PRK00039 ruvC Holliday junction resolvase; Reviewed

Probab=93.33  E-value=0.59  Score=39.61  Aligned_cols=63  Identities=19%  Similarity=0.237  Sum_probs=37.6

Q ss_pred             CEEEEEecCCCceeEEEEECCCCc---eeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEE
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKN---LRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDII   77 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~---i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~i   77 (339)
                      |+|||||.|...++.++++.+ ++   ++....+..   .  -.+.+     .++...+...+..++++.     ++|.+
T Consensus         2 m~iLGIDPgl~~tG~avi~~~-~~~~~~~~~G~i~t---~--~~~~~-----~~Rl~~I~~~l~~~i~~~-----~Pd~v   65 (164)
T PRK00039          2 MRILGIDPGLRRTGYGVIEVE-GRRLSYVASGVIRT---P--SDLDL-----PERLKQIYDGLSELIDEY-----QPDEV   65 (164)
T ss_pred             CEEEEEccccCceeEEEEEec-CCeEEEEEeeEEEC---C--CCCCH-----HHHHHHHHHHHHHHHHHh-----CCCEE
Confidence            899999999999999999854 33   222222211   1  11111     233455556777777754     55667


Q ss_pred             EE
Q psy9394          78 AY   79 (339)
Q Consensus        78 a~   79 (339)
                      ++
T Consensus        66 ai   67 (164)
T PRK00039         66 AI   67 (164)
T ss_pred             EE
Confidence            65

>PTZ00294 glycerol kinase-like protein; Provisional

Probab=93.19  E-value=0.54  Score=47.17  Aligned_cols=77  Identities=14%  Similarity=0.159  Sum_probs=52.6

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCC--CcCEEEE
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELK--KIDIIAY   79 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~--did~ia~   79 (339)
                      .+||||.++..++++|++.+ +++++..+... +...+..|.... ....-++.+...+++++++.+.++.  +|.+|++
T Consensus         3 ~~lgiDiGTts~Ka~l~d~~-G~~v~~~~~~~-~~~~~~~g~~eq-d~~~~~~~~~~~l~~~~~~~~~~~~~~~I~aIgi   79 (504)
T PTZ00294          3 YIGSIDQGTTSTRFIIFDEK-GNVVSSHQIPH-EQITPHPGWLEH-DPEEILRNVYKCMNEAIKKLREKGPSFKIKAIGI   79 (504)
T ss_pred             EEEEEecCCCceEEEEECCC-CCEEEEEEEee-cccCCCCCeEee-CHHHHHHHHHHHHHHHHHHcCCCCccCceEEEEe
Confidence            48999999999999999987 67887654322 222333333221 2234466677788888888877666  7888887


Q ss_pred             eC
Q psy9394          80 TR   81 (339)
Q Consensus        80 ~~   81 (339)
                      +.
T Consensus        80 s~   81 (504)
T PTZ00294         80 TN   81 (504)
T ss_pred             ec
Confidence            64

>PRK10939 autoinducer-2 (AI-2) kinase; Provisional

Probab=93.10  E-value=0.49  Score=47.70  Aligned_cols=78  Identities=9%  Similarity=0.127  Sum_probs=53.2

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccc-cccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVH-KEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~-~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      .+||||.++..++++|++.+ +++++.......... .+..|.... .....++.+...++++++++++.+.+|.+|+++
T Consensus         4 ~~lgID~GTts~Ka~l~d~~-G~~l~~~~~~~~~~~~~~~~g~~Eq-d~~~~w~~~~~~l~~~~~~~~~~~~~I~aI~~s   81 (520)
T PRK10939          4 YLMALDAGTGSIRAVIFDLN-GNQIAVGQAEWRHLAVPDVPGSMEF-DLEKNWQLACQCIRQALQKAGIPASDIAAVSAT   81 (520)
T ss_pred             EEEEEecCCCceEEEEECCC-CCEEEEEeccccccCCCCCCCCeeE-CHHHHHHHHHHHHHHHHHHcCCCccceEEEEEE
Confidence            48999999999999999987 678876432210010 122232221 223456777788999998888888889999886


Q ss_pred             C
Q psy9394          81 R   81 (339)
Q Consensus        81 ~   81 (339)
                      .
T Consensus        82 ~   82 (520)
T PRK10939         82 S   82 (520)
T ss_pred             C
Confidence            3

>PRK00047 glpK glycerol kinase; Provisional

Probab=93.05  E-value=0.51  Score=47.24  Aligned_cols=77  Identities=16%  Similarity=0.164  Sum_probs=53.0

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      .+||||.++..++++|++.+ +++++..... ...+.+..|... -....-.+.+...++++++++++++.+|..|+++.
T Consensus         6 ~~lgiD~GTts~Ka~l~d~~-g~~~~~~~~~-~~~~~~~~g~~e-~d~~~~~~~~~~~~~~~~~~~~~~~~~I~~Igis~   82 (498)
T PRK00047          6 YILALDQGTTSSRAIIFDHD-GNIVSVAQKE-FTQIFPQPGWVE-HDPNEIWASQLSVIAEALAKAGISPDQIAAIGITN   82 (498)
T ss_pred             EEEEEecCCCceEEEEECCC-CCEEEEEeee-ccccCCCCCeEe-eCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEec
Confidence            47999999999999999876 6788764321 122222223211 11234567777899999999998888899999864

>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

Probab=92.96  E-value=0.62  Score=46.79  Aligned_cols=61  Identities=23%  Similarity=0.221  Sum_probs=51.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccC
Q psy9394         234 EKANIARGFLDAIIDVLTFKCIAALKNTGI--NKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPK  297 (339)
Q Consensus       234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~~--~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~  297 (339)
                      .+.++++++.+.++-.+...+..+.+-.+.  +.|.++||-+.|..+++.+-+.+   |.+|.+++
T Consensus       371 ~~~~l~ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGgars~~w~Qi~Ad~~---g~~v~~~~  433 (502)
T COG1070         371 TRAHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPLWLQILADAL---GLPVVVPE  433 (502)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCcccCHHHHHHHHHHc---CCeeEecC
Confidence            467899999999888888888877766454  46999999999999999998876   78888776

>PLN02669 xylulokinase

Probab=92.87  E-value=0.71  Score=46.97  Aligned_cols=73  Identities=12%  Similarity=0.162  Sum_probs=52.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHH
Q psy9394         234 EKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGA  313 (339)
Q Consensus       234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~  313 (339)
                      ++.++++++.+.++-.+...++.+......+.|.++||.+.|..+++.+.+.+   |..|+++..    +++.++|+|..
T Consensus       417 ~~~~~~RAvlEg~a~~~r~~~~~l~~~~~~~~i~~~GGgs~s~~w~Qi~ADVl---g~pV~~~~~----~ea~alGAA~~  489 (556)
T PLN02669        417 DPPSEVRAIIEGQFLSMRAHAERFGMPVPPKRIIATGGASANQSILKLIASIF---GCDVYTVQR----PDSASLGAALR  489 (556)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcChhcCHHHHHHHHHHc---CCCeEecCC----CCchHHHHHHH
Confidence            56788888888887777777666642223578999999999999999999887   667777652    23345565443

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=92.74  E-value=13  Score=38.17  Aligned_cols=53  Identities=13%  Similarity=0.098  Sum_probs=41.4

Q ss_pred             CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         262 GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       262 ~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      .++.|+|+||.+.-..+++.+.+.+   +.+++.+   ...|..++.|+|.+.....+.
T Consensus       308 ~Id~ViLvGGssriP~v~~~l~~~f---~~~~~~~---~npdeaVA~GAAi~a~~l~~~  360 (595)
T PRK01433        308 NIDGVILVGGATRIPLIKDELYKAF---KVDILSD---IDPDKAVVWGAALQAENLIAP  360 (595)
T ss_pred             cCcEEEEECCcccChhHHHHHHHHh---CCCceec---CCchHHHHHHHHHHHHHhhCC
Confidence            4789999999999999999998876   4444433   245889999999988766553

>TIGR01311 glycerol_kin glycerol kinase

Probab=92.50  E-value=0.68  Score=46.32  Aligned_cols=77  Identities=16%  Similarity=0.160  Sum_probs=53.1

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      .+||||.++..++++|++.+ ++++...+... ..+.+..|... .....-.+.+...++.+++++++.+++|..|+++.
T Consensus         2 ~~lgiDiGtt~iKa~l~d~~-g~~l~~~~~~~-~~~~~~~g~~e-~d~~~~~~~i~~~i~~~~~~~~~~~~~i~aIgis~   78 (493)
T TIGR01311         2 YILAIDQGTTSSRAIVFDKD-GNIVAIHQKEF-TQIFPKPGWVE-HDPMEIWESVLSCIAEALAKAGIKPDDIAAIGITN   78 (493)
T ss_pred             eEEEEecCCCceEEEEECCC-CCEEEEEeeec-cccCCCCCcEe-eCHHHHHHHHHHHHHHHHHHcCCChhheeEEEEec
Confidence            58999999999999999876 67887654321 11122223221 12234567777889999999998888899998753

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.

>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

Probab=92.49  E-value=1.1  Score=44.99  Aligned_cols=83  Identities=22%  Similarity=0.296  Sum_probs=55.4

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      +++||||.++..+++++++.+.++++...+... ....+..|.... ....-++.+...++++++++.+.+.+|.+|+++
T Consensus         4 ~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~-~~~~~~~g~~e~-d~~~~w~~~~~ai~~l~~~~~~~~~~I~aI~is   81 (502)
T COG1070           4 KYVLGIDIGTTSVKAVLFDEDGGEVVATARFEN-PVSTPQPGWAEQ-DPDELWQAILEALRQLLEESKIDPDAIAAIGIS   81 (502)
T ss_pred             cEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccc-cccCCCCCCccc-CHHHHHHHHHHHHHHHHHhcccChhhceEEEEe
Confidence            379999999999999999866134665543321 112223232221 234456677789999999998888899999876


Q ss_pred             C-CCCC
Q psy9394          81 R-GPGL   85 (339)
Q Consensus        81 ~-gPG~   85 (339)
                      . +.|.
T Consensus        82 ~~~~g~   87 (502)
T COG1070          82 GQGHGL   87 (502)
T ss_pred             ccccce
Confidence            4 3544

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=92.33  E-value=15  Score=37.79  Aligned_cols=64  Identities=19%  Similarity=0.171  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHh-----CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         251 TFKCIAALKNT-----GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       251 ~~~~~~~~~~~-----~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      .+.++++++..     .++.|+|+||.+....+.+.+.+.+.   ..++.+   ..-|..++.|+|.+.....+.
T Consensus       296 ~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~---~~~~~~---~npdeaVA~GAai~a~~l~~~  364 (599)
T TIGR01991       296 LSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFG---QEPLTD---IDPDQVVALGAAIQADLLAGN  364 (599)
T ss_pred             HHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhC---CCCCCC---CCCcHHHHHHHHHHHHHhccc
Confidence            34444444443     35789999999999999999998763   333222   345889999999988776654

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination

Probab=92.26  E-value=0.48  Score=38.77  Aligned_cols=91  Identities=21%  Similarity=0.195  Sum_probs=56.8

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEE--EEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEE
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSH--VICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIA   78 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~--~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia   78 (339)
                      |.+||||-++..+++|+.+.. + .++.  ..+.+.                 ........+..++++-     .++.|+
T Consensus         1 mriL~lD~G~kriGiAvsd~~-~-~~a~pl~~i~~~-----------------~~~~~~~~l~~li~~~-----~i~~iV   56 (135)
T PF03652_consen    1 MRILGLDYGTKRIGIAVSDPL-G-IIASPLETIPRR-----------------NREKDIEELKKLIEEY-----QIDGIV   56 (135)
T ss_dssp             -EEEEEEECSSEEEEEEEETT-T-SSEEEEEEEEEC-----------------CCCCCHHHHHHHHHHC-----CECEEE
T ss_pred             CeEEEEEeCCCeEEEEEecCC-C-CeEeeeEEEECC-----------------CCchHHHHHHHHHHHh-----CCCEEE
Confidence            899999999999999999987 4 4442  222221                 0022334455555543     578888


Q ss_pred             EeCC---CCCCc-hhHHHHHHHHHHHHhc-CCCEEeecchhH
Q psy9394          79 YTRG---PGLPG-SLLVGSSIACSIALSI-NKPVIGINHLEG  115 (339)
Q Consensus        79 ~~~g---PG~~t-~lr~g~~~ak~la~~~-~~p~~~v~h~~a  115 (339)
                      ++.-   -|..+ -.+....|++.|+... ++|++.+++-..
T Consensus        57 vGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~T   98 (135)
T PF03652_consen   57 VGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERLT   98 (135)
T ss_dssp             EEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSCS
T ss_pred             EeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCChh
Confidence            7631   13332 2445566888888887 899887776543

The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.

>PRK04123 ribulokinase; Provisional

Probab=91.91  E-value=0.88  Score=46.15  Aligned_cols=77  Identities=10%  Similarity=0.088  Sum_probs=51.8

Q ss_pred             EEEEEecCCCceeEEEEE-CCCCceeEEEEeeecccc------cccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Q psy9394           2 IILGIESSCDDSGLALYD-THIKNLRSHVICSQNLVH------KEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKI   74 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~-~~~~~i~~~~~~~~~~~~------~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~di   74 (339)
                      ++||||.++..++++|++ ++ +++++...... +..      .+..|.... ....-++.+...++.+++++++++.+|
T Consensus         4 ~~lgiD~GTts~Ka~l~d~~~-g~~~~~~~~~~-~~~~~~~~~~~~~g~~Eq-dp~~~w~~~~~~i~~~~~~~~~~~~~I   80 (548)
T PRK04123          4 YVIGLDFGTDSVRALLVDCAT-GEELATAVVEY-PHWVKGRYLDLPPNQALQ-HPLDYIESLEAAIPAVLKEAGVDPAAV   80 (548)
T ss_pred             EEEEEecCCCceEEEEEECCC-CcEeEEEEeec-cccccccccCCCCCceee-CHHHHHHHHHHHHHHHHHHcCCChhhE
Confidence            489999999999999999 36 67887643221 111      122232211 122335667778888999889888889


Q ss_pred             CEEEEeC
Q psy9394          75 DIIAYTR   81 (339)
Q Consensus        75 d~ia~~~   81 (339)
                      ..|+++.
T Consensus        81 ~aIgis~   87 (548)
T PRK04123         81 VGIGVDF   87 (548)
T ss_pred             EEEEEec
Confidence            9999875

>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=91.80  E-value=17  Score=37.27  Aligned_cols=55  Identities=13%  Similarity=0.132  Sum_probs=42.1

Q ss_pred             CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcCCC
Q psy9394         262 GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNYKS  322 (339)
Q Consensus       262 ~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~~~  322 (339)
                      .++.|+++||...=..+.+.+.+.+.   -++   .....-|...++|++.......+...
T Consensus       309 ~I~~VilvGGstriP~V~~~v~~~f~---~~~---~~~inpdeava~GAa~qa~~l~~~~~  363 (579)
T COG0443         309 DIDLVILVGGSTRIPAVQELVKEFFG---KEP---EKSINPDEAVALGAAIQAAVLSGEVP  363 (579)
T ss_pred             hCceEEEccceeccHHHHHHHHHHhC---ccc---cccCCccHHHHHHHHHHHHhhcCccc
Confidence            47899999999999999999988752   111   12245578899999999888887654

>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]

Probab=91.65  E-value=9.8  Score=34.20  Aligned_cols=134  Identities=14%  Similarity=0.180  Sum_probs=74.2

Q ss_pred             eeEEEEecCCcceEEeeeccCCcchhhhHHHHhHcCC-CCCcHHHHHhccccCCCCcccCCC-ccccCCCeeeecchH--
Q psy9394         140 HTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDL-GYPGGPEISLISEFGDPNIYKFPR-PMLYTNNFNFSFSGL--  215 (339)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~s~G~~~d~va~~LG~-~~~gg~~le~lA~~g~~~~~~~~~-~l~~~~~~~~~~~~l--  215 (339)
                      ...+..+.+...++.++..- -.-|.++.-.+-+-+. +|.   .|-.+|..|+....+.-+ .++..   ++.--++  
T Consensus       155 GvSilkvtgpsqf~RvGGss-lGGGtlwGLlsLlt~a~~yd---qmld~aq~GDn~svDmlVgdIYg~---dy~~~glks  227 (342)
T COG5146         155 GVSILKVTGPSQFERVGGSS-LGGGTLWGLLSLLTQATDYD---QMLDMAQHGDNNSVDMLVGDIYGD---DYEEPGLKS  227 (342)
T ss_pred             CeEEEEecCcchhccccccc-cCcchHHHHHHHHcccccHH---HHHHHHhcCCCccceeeehhhccC---ccccCCCCc
Confidence            35566666666665554421 2334555544433333 233   565688877753221110 01100   0111111  


Q ss_pred             ---HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHH
Q psy9394         216 ---KTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRK  280 (339)
Q Consensus       216 ---~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~  280 (339)
                         .+.+-..+..+.++.++..+.||++++--++.+.+-.++--.+++.+..||++.|---.|..+..
T Consensus       228 ~~iAssFGkVf~~r~k~le~F~p~di~~sll~aisnnigqiAyl~A~~~n~qNIyfgGSf~rnhl~tm  295 (342)
T COG5146         228 DLIASSFGKVFHHRDKPLEEFTPSDILASLLGAISNNIGQIAYLVAREFNTQNIYFGGSFHRNHLLTM  295 (342)
T ss_pred             hhhHHHHHHHHHhhcCchhhcCcHHHHHHHHHHHhcchhhhHHHHHHhhccceEEEeeeeccchhhhh
Confidence               22334444443323344578999999999999999999888888899999999874334444443

>PRK00109 Holliday junction resolvase-like protein; Reviewed

Probab=91.44  E-value=2.1  Score=35.09  Aligned_cols=93  Identities=17%  Similarity=0.139  Sum_probs=55.4

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEE--EeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEE
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHV--ICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIA   78 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~--~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia   78 (339)
                      |.+||||-+...+++|+.+.. + .++.-  .+.+                 +........+..++++.     +++.|+
T Consensus         4 ~~iLalD~G~kriGvAv~d~~-~-~~a~pl~~i~~-----------------~~~~~~~~~l~~~i~~~-----~i~~iV   59 (138)
T PRK00109          4 GRILGLDVGTKRIGVAVSDPL-G-GTAQPLETIKR-----------------NNGTPDWDRLEKLIKEW-----QPDGLV   59 (138)
T ss_pred             CcEEEEEeCCCEEEEEEecCC-C-CEEcCEEEEEc-----------------CCCchHHHHHHHHHHHh-----CCCEEE
Confidence            789999999999999999876 3 44431  2211                 00111234555666653     467888


Q ss_pred             EeC--C-CCCCch-hHHHHHHHHHHHHhcCCCEEeecchhHHh
Q psy9394          79 YTR--G-PGLPGS-LLVGSSIACSIALSINKPVIGINHLEGHL  117 (339)
Q Consensus        79 ~~~--g-PG~~t~-lr~g~~~ak~la~~~~~p~~~v~h~~aHa  117 (339)
                      ++.  . -|..+. -+....|++.|....++|++.+++...-.
T Consensus        60 vGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~TT~  102 (138)
T PRK00109         60 VGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERLSTV  102 (138)
T ss_pred             EeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCHH
Confidence            762  1 122211 23334577788777788888777654433

>TIGR01234 L-ribulokinase L-ribulokinase

Probab=91.29  E-value=0.93  Score=45.88  Aligned_cols=77  Identities=6%  Similarity=-0.016  Sum_probs=52.1

Q ss_pred             EEEEEecCCCceeEEEEE-CCCCceeEEEEeeecc-----ccccc------CCccchHHHHHHHHHHHHHHHHHHHhCCC
Q psy9394           2 IILGIESSCDDSGLALYD-THIKNLRSHVICSQNL-----VHKEY------GGVVPELAARTHIQTIIPLLSKLLKNSNL   69 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~-~~~~~i~~~~~~~~~~-----~~~~~------~G~~~~~~~~~~~~~l~~~i~~~l~~~~i   69 (339)
                      ++||||.+|..+.++|++ .+ +++++..... .+     ...+.      .|.... ....-++.+...++++++++++
T Consensus         2 ~~lgiD~GTss~Ka~l~d~~~-G~~~a~~~~~-~~~~~~~~~~~~~~~~~~~g~~Eq-dp~~~w~~~~~~~~~~~~~~~~   78 (536)
T TIGR01234         2 YAIGVDFGTLSGRALAVDVAT-GEEIATAVEW-YRHWVKGQFLPKTGAKLPNDQALQ-HPADYIEVLEAAIPTVLAELGV   78 (536)
T ss_pred             eEEEEecCCCceEEEEEECCC-CcEeeeeeec-cccccccccCCCccccCCCCcccc-CHHHHHHHHHHHHHHHHHHcCC
Confidence            589999999999999999 65 5788754221 11     01121      121111 2234466677889999999888


Q ss_pred             CCCCcCEEEEeC
Q psy9394          70 ELKKIDIIAYTR   81 (339)
Q Consensus        70 ~~~did~ia~~~   81 (339)
                      ++.+|.+|+++.
T Consensus        79 ~~~~I~aI~~s~   90 (536)
T TIGR01234        79 DPADVVGIGVDF   90 (536)
T ss_pred             CHHHEEEEEEec
Confidence            878899999874

This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.

>PRK15027 xylulokinase; Provisional

Probab=90.39  E-value=1.3  Score=44.25  Aligned_cols=75  Identities=9%  Similarity=0.086  Sum_probs=48.7

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      ++||||.+|..++++|++.+ +++++...... ++..+..|.... ....-++.+...+++++++.  ..++|.+|+++.
T Consensus         1 ~~lgID~GTts~Ka~l~d~~-G~vva~~~~~~-~~~~~~~g~~eq-d~~~~w~~~~~~~~~l~~~~--~~~~I~aI~is~   75 (484)
T PRK15027          1 MYIGIDLGTSGVKVILLNEQ-GEVVASQTEKL-TVSRPHPLWSEQ-DPEQWWQATDRAMKALGDQH--SLQDVKALGIAG   75 (484)
T ss_pred             CEEEEEecccceEEEEEcCC-CCEEEEEeecc-cccCCCCCcccc-CHHHHHHHHHHHHHHHHHhC--CccceeEEEEec
Confidence            47999999999999999987 78987653221 222222232221 22334556667777777765  346799999874

>TIGR01312 XylB D-xylulose kinase

Probab=90.25  E-value=0.87  Score=45.20  Aligned_cols=80  Identities=16%  Similarity=0.107  Sum_probs=54.4

Q ss_pred             EEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC-C
Q psy9394           4 LGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR-G   82 (339)
Q Consensus         4 Lgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~-g   82 (339)
                      ||||.++..++++|++.+ ++++.+..... +.+.+..|... .......+.+...+++++++.++++.+|..|+++. .
T Consensus         1 lgIDiGtt~ik~~l~d~~-g~i~~~~~~~~-~~~~~~~g~~e-~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gIgvs~~~   77 (481)
T TIGR01312         1 LGIDLGTSGVKALLVDEQ-GEVIASGSAPH-TVISPHPGWSE-QDPEDWWDATEEAIKELLEQASEMGQDIKGIGISGQM   77 (481)
T ss_pred             CceeecCcceEEEEECCC-CCEEEEEeecc-cccCCCCCCee-eCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCC
Confidence            589999999999999876 67887654322 22112222211 12234566677889999999998888999999873 4


Q ss_pred             CCCC
Q psy9394          83 PGLP   86 (339)
Q Consensus        83 PG~~   86 (339)
                      ||..
T Consensus        78 ~g~v   81 (481)
T TIGR01312        78 HGLV   81 (481)
T ss_pred             ceeE
Confidence            5543

D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.

>TIGR01314 gntK_FGGY gluconate kinase, FGGY type

Probab=89.81  E-value=1.9  Score=43.27  Aligned_cols=76  Identities=9%  Similarity=0.233  Sum_probs=50.9

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      ++||||.++..++++|++.+ +++++..... .+.+.+..|.... ......+.+...+++++++.+.+ .+|..|+++.
T Consensus         1 ~~lgiDiGtt~~K~~l~d~~-g~i~~~~~~~-~~~~~~~~g~~e~-d~~~~~~~~~~~i~~~~~~~~~~-~~I~~Igis~   76 (505)
T TIGR01314         1 YMIGVDIGTTSTKAVLFEEN-GKIVAKSSIG-YPLYTPASGMAEE-NPEEIFEAVLVTIREVSINLEDE-DEILFVSFST   76 (505)
T ss_pred             CEEEEeccccceEEEEEcCC-CCEEEEEEee-cccccCCCCCeee-CHHHHHHHHHHHHHHHHHhCCCc-CceEEEEEec
Confidence            37999999999999999887 7788765432 1221211222211 12344666778888888877765 6799999864

Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.

>PLN02669 xylulokinase

Probab=89.33  E-value=1.3  Score=45.05  Aligned_cols=77  Identities=21%  Similarity=0.311  Sum_probs=47.5

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccC---CccchHH-------HH-HHHHHHHHHHHHHHHhCCCC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYG---GVVPELA-------AR-THIQTIIPLLSKLLKNSNLE   70 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~---G~~~~~~-------~~-~~~~~l~~~i~~~l~~~~i~   70 (339)
                      .+||||.||..++++|++.+ +++++......-.....|+   |......       .- .-.+.+..+++++. +++++
T Consensus         9 ~~LGiD~GT~s~Ka~l~d~~-g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~-~~~~~   86 (556)
T PLN02669          9 LFLGFDSSTQSLKATVLDSN-LRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA-KEKFP   86 (556)
T ss_pred             eEEEEecccCCeEEEEEcCC-CCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH-HcCCC
Confidence            58999999999999999977 7888765332210011121   2222111       00 12255556677765 56777


Q ss_pred             CCCcCEEEEe
Q psy9394          71 LKKIDIIAYT   80 (339)
Q Consensus        71 ~~did~ia~~   80 (339)
                      +++|.+|+++
T Consensus        87 ~~~I~aIs~s   96 (556)
T PLN02669         87 FHKVVAISGS   96 (556)
T ss_pred             hhhEEEEEec
Confidence            7889999887

>PRK10331 L-fuculokinase; Provisional

Probab=89.32  E-value=2  Score=42.61  Aligned_cols=76  Identities=11%  Similarity=0.037  Sum_probs=48.3

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeec-ccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQN-LVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~-~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      .+||||.+|..++++|++.+ +++++..+.... ....+..|.... ....-++.+...+++++++.  ...+|..|+++
T Consensus         3 ~~lgID~GTt~~Ka~l~d~~-G~~~~~~~~~~~~~~~~~~~g~~eq-d~~~~w~~~~~~~~~~~~~~--~~~~I~~I~is   78 (470)
T PRK10331          3 VILVLDCGATNVRAIAVDRQ-GKIVARASTPNASDIAAENSDWHQW-SLDAILQRFADCCRQINSEL--TECHIRGITVT   78 (470)
T ss_pred             eEEEEecCCCceEEEEEcCC-CcEEEEEecccccccCCCCCCCccc-CHHHHHHHHHHHHHHHHHhC--CccceEEEEEe
Confidence            47999999999999999977 678876543211 012222232211 12334566667788887754  34579999887


Q ss_pred             C
Q psy9394          81 R   81 (339)
Q Consensus        81 ~   81 (339)
                      .
T Consensus        79 ~   79 (470)
T PRK10331         79 T   79 (470)
T ss_pred             c
Confidence            5

>TIGR02628 fuculo_kin_coli L-fuculokinase

Probab=88.74  E-value=2.2  Score=42.36  Aligned_cols=76  Identities=13%  Similarity=0.048  Sum_probs=48.1

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeee-cccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQ-NLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~-~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      .+||||.+|..++++|++.+ +++++..+... .....+..|.... ....-++.+...+++++++  +.+.+|.+|+++
T Consensus         2 ~ilgiD~GTss~K~~l~d~~-g~~va~~~~~~~~~~~~~~~g~~eq-d~~~~w~~~~~~~~~l~~~--~~~~~I~aI~~s   77 (465)
T TIGR02628         2 VILVLDCGATNLRAIAINRQ-GKIVASASTPNATKQAIENNDYHIW-DLEAIWQKLADCCQQINSE--LTEKHIRGIAVT   77 (465)
T ss_pred             eEEEEecCCCcEEEEEEcCC-CCEEEEEecccccCCCCCCCCceee-CHHHHHHHHHHHHHHHHhh--cChhceEEEEEe
Confidence            58999999999999999987 78887654321 0112223343221 1223455566677777653  455679999986


Q ss_pred             C
Q psy9394          81 R   81 (339)
Q Consensus        81 ~   81 (339)
                      .
T Consensus        78 ~   78 (465)
T TIGR02628        78 T   78 (465)
T ss_pred             c
Confidence            4

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.

>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B

Probab=88.48  E-value=4.1  Score=33.58  Aligned_cols=89  Identities=17%  Similarity=0.131  Sum_probs=52.5

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEE--EeeecccccccCCccchHHHHHHHH-HHHHHHHHHHHhCCCCCCCcCEE
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHV--ICSQNLVHKEYGGVVPELAARTHIQ-TIIPLLSKLLKNSNLELKKIDII   77 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~--~~~~~~~~~~~~G~~~~~~~~~~~~-~l~~~i~~~l~~~~i~~~did~i   77 (339)
                      |.+||+|-++..+++|+-+.. + .++..  .+.+                 +... .-...+..++++.     +++.|
T Consensus         2 ~~ilalD~G~KrIGvA~sd~~-~-~~A~pl~~i~~-----------------~~~~~~~~~~l~~li~~~-----~~~~v   57 (141)
T COG0816           2 MRILALDVGTKRIGVAVSDIL-G-SLASPLETIKR-----------------KNGKPQDFNALLKLVKEY-----QVDTV   57 (141)
T ss_pred             ceEEEEecCCceEEEEEecCC-C-ccccchhhhee-----------------ccccHhhHHHHHHHHHHh-----CCCEE
Confidence            789999999999999999876 3 44321  1111                 0111 1234455555543     67888


Q ss_pred             EEeC--CCCCCchhHH--HHHHHHHHHHhcCCCEEeecch
Q psy9394          78 AYTR--GPGLPGSLLV--GSSIACSIALSINKPVIGINHL  113 (339)
Q Consensus        78 a~~~--gPG~~t~lr~--g~~~ak~la~~~~~p~~~v~h~  113 (339)
                      +++.  +.-..++.|.  ...|++.|....++|++.+++=
T Consensus        58 VVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DER   97 (141)
T COG0816          58 VVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDER   97 (141)
T ss_pred             EEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence            8753  1122233343  4457777777777777665543

subtilis) [DNA replication, recombination, and repair]

>PRK13321 pantothenate kinase; Reviewed

Probab=88.06  E-value=1.8  Score=39.33  Aligned_cols=62  Identities=16%  Similarity=0.239  Sum_probs=41.7

Q ss_pred             EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      +|+||.++..+++++++++  +++...++....              .+....+...+..++++.+.++++++.|+++
T Consensus         2 iL~IDIGnT~ik~gl~~~~--~i~~~~~~~T~~--------------~~~~~~~~~~l~~l~~~~~~~~~~i~~i~vs   63 (256)
T PRK13321          2 LLLIDVGNTNIKLGVFDGD--RLLRSFRLPTDK--------------SRTSDELGILLLSLFRHAGLDPEDIRAVVIS   63 (256)
T ss_pred             EEEEEECCCeEEEEEEECC--EEEEEEEEecCC--------------CCCHHHHHHHHHHHHHHcCCChhhCCeEEEE
Confidence            5899999999999999977  576543321100              0111345566777788777777788887664

>PRK13318 pantothenate kinase; Reviewed

Probab=86.94  E-value=2.6  Score=38.31  Aligned_cols=67  Identities=24%  Similarity=0.286  Sum_probs=44.1

Q ss_pred             EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC-
Q psy9394           3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR-   81 (339)
Q Consensus         3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~-   81 (339)
                      +|+||.+...+++++++++  +++...++....              ......+...++.+++..++++.+++.|+++. 
T Consensus         2 iL~IDIGnT~iK~al~d~g--~i~~~~~~~t~~--------------~~~~~~~~~~l~~l~~~~~~~~~~i~~I~issV   65 (258)
T PRK13318          2 LLAIDVGNTNTVFGLYEGG--KLVAHWRISTDS--------------RRTADEYGVWLKQLLGLSGLDPEDITGIIISSV   65 (258)
T ss_pred             EEEEEECCCcEEEEEEECC--EEEEEEEEeCCC--------------CCCHHHHHHHHHHHHHHcCCCcccCceEEEEEe
Confidence            6899999999999999966  676543321100              00112244567778888887777898887653 


Q ss_pred             CCCC
Q psy9394          82 GPGL   85 (339)
Q Consensus        82 gPG~   85 (339)
                      -|+.
T Consensus        66 vp~~   69 (258)
T PRK13318         66 VPSV   69 (258)
T ss_pred             cCch
Confidence            3654

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=86.75  E-value=44  Score=34.92  Aligned_cols=65  Identities=14%  Similarity=0.195  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHhC-----CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         250 LTFKCIAALKNTG-----INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       250 l~~~~~~~~~~~~-----~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      +.+.+++++++.+     ++.|+|+||.+.-..+++.+.+.+.   .++...   ...|..++.|++.+.....+.
T Consensus       350 ~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~---~~~~~~---~npdeaVA~GAAi~aa~l~~~  419 (663)
T PTZ00400        350 TIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFG---KEPSKG---VNPDEAVAMGAAIQAGVLKGE  419 (663)
T ss_pred             HHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhC---CCcccC---CCCccceeeccHHHHHhhcCC
Confidence            3344444444443     5799999999999999999988763   332221   345778999999888776664

>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination

Probab=86.69  E-value=6.7  Score=32.71  Aligned_cols=63  Identities=17%  Similarity=0.345  Sum_probs=35.5

Q ss_pred             EEEEEecCCCceeEEEEECCCCc--eeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394           2 IILGIESSCDDSGLALYDTHIKN--LRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAY   79 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~--i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~   79 (339)
                      +|||||-|...++.|+++...++  ++....+..   .+.    .+.   ......+...+.+++++.     ++|.+++
T Consensus         1 rILGIDPGl~~~G~av~~~~~~~~~~~~~g~i~t---~~~----~~~---~~rl~~I~~~l~~~i~~~-----~Pd~vai   65 (154)
T cd00529           1 RILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRT---SSD----APL---PSRLKTIYDGLNEVIDQF-----QPDVVAI   65 (154)
T ss_pred             CEEEEccCcCceEEEEEEeeCCeEEEEEeeEEEC---CCC----CCH---HHHHHHHHHHHHHHHHHh-----CCCEEEE
Confidence            48999999999999999743122  222222211   111    111   223444666777777753     4566665

HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=86.60  E-value=3.5  Score=42.59  Aligned_cols=66  Identities=18%  Similarity=0.146  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHhC-----CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         249 VLTFKCIAALKNTG-----INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       249 ~l~~~~~~~~~~~~-----~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      .+.+.++++++..+     ++.|+|+||.+.-..+.+.+.+.+   +.++..+   ...|..++.|+|.+.....+.
T Consensus       308 ~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f---g~~~~~~---~npdeava~GAa~~aa~l~~~  378 (627)
T PRK00290        308 RTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF---GKEPNKG---VNPDEVVAIGAAIQGGVLAGD  378 (627)
T ss_pred             HHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh---CCCCCcC---cCChHHHHHhHHHHHHHhcCC
Confidence            33444455554443     679999999999999999998876   3333222   356889999999988777664

>PRK13311 N-acetyl-D-glucosamine kinase; Provisional

Probab=86.29  E-value=3.4  Score=37.41  Aligned_cols=101  Identities=17%  Similarity=0.230  Sum_probs=56.6

Q ss_pred             EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCC
Q psy9394           3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRG   82 (339)
Q Consensus         3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~g   82 (339)
                      ++|||.+.+...+++++.+ ++++.++++..           |..    ..+.+...+..++++.......+..|+++. 
T Consensus         2 ~lgidiggt~i~~~l~d~~-g~i~~~~~~~~-----------~~~----~~~~~~~~i~~~i~~~~~~~~~~~gIgv~~-   64 (256)
T PRK13311          2 YYGFDMGGTKIELGVFDEN-LQRIWHKRVPT-----------PRE----DYPQLLQILRDLTEEADTYCGVQGSVGIGI-   64 (256)
T ss_pred             EEEEEECCCcEEEEEECCC-CCEEEEEEecC-----------CCc----CHHHHHHHHHHHHHHHHhhcCCCceEEEEe-
Confidence            5999999999999999876 67887654321           100    012233344444444322222234555542 


Q ss_pred             CCCC---chh--------HHHHHHHHHHHHhcCCCEEeecchhHHhhhc
Q psy9394          83 PGLP---GSL--------LVGSSIACSIALSINKPVIGINHLEGHLLSP  120 (339)
Q Consensus        83 PG~~---t~l--------r~g~~~ak~la~~~~~p~~~v~h~~aHa~s~  120 (339)
                      ||..   ++.        ..+..+.+.+...++.|++--+--.+.|++-
T Consensus        65 pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~~pV~leNDanaaAlaE  113 (256)
T PRK13311         65 PGLPNADDGTVFTANVPSAMGQPLQADLSRLIQREVRIDNDANCFALSE  113 (256)
T ss_pred             cCcEECCCCEEEccCCCcccCCChHHHHHHHHCCCEEEEchhhHHHHHH
Confidence            4422   110        1123456777777899988777666666543

>COG4020 Uncharacterized protein conserved in archaea [Function unknown]

Probab=85.92  E-value=3.7  Score=37.07  Aligned_cols=66  Identities=27%  Similarity=0.457  Sum_probs=44.7

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |+.+|||-++.-.++|+.+++ +...++-  -+.             ..++-.+  -..++.+-+++++...|+|.||.+
T Consensus         3 m~fVGiDHGTsgi~~ai~d~e-~~~~Fkl--gra-------------e~~~~~e--k~~L~~l~de~~i~l~eidlialt   64 (332)
T COG4020           3 MMFVGIDHGTSGIKFAIYDGE-KDPEFKL--GRA-------------ELRKVAE--KSLLRELEDEARIALEEIDLIALT   64 (332)
T ss_pred             eEEEeecCCCcceEEEEEcCC-CCceEEe--chh-------------hhhhhhH--HHHHHHhhHhhCCccccceEEEEe
Confidence            788999999999999999976 4444431  110             0011111  235667778888999999999987


Q ss_pred             CCCC
Q psy9394          81 RGPG   84 (339)
Q Consensus        81 ~gPG   84 (339)
                      .+-|
T Consensus        65 YsMG   68 (332)
T COG4020          65 YSMG   68 (332)
T ss_pred             eccc
Confidence            6544

>PRK13331 pantothenate kinase; Reviewed

Probab=85.47  E-value=3.1  Score=37.83  Aligned_cols=39  Identities=23%  Similarity=0.195  Sum_probs=31.0

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGG  271 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGG  271 (339)
                      ...+.|..++.......+-.+++++.++.+...|+++||
T Consensus       174 nT~~ai~sGi~~g~~g~i~~~i~~~~~~~~~~~vi~TGG  212 (251)
T PRK13331        174 NTQEAIQSGVIYTILAGLRDFIEDWLSLFPDGKIVLTGG  212 (251)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            355667777778888888888888888877668999999

>CHL00094 dnaK heat shock protein 70

Probab=85.46  E-value=4.1  Score=42.05  Aligned_cols=53  Identities=17%  Similarity=0.128  Sum_probs=40.8

Q ss_pred             CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         262 GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       262 ~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      .++.|+|+||.+....+++.+.+.+   |.++...   ...|.+++.|+|.+..+..+.
T Consensus       328 ~i~~ViLvGGssriP~v~~~l~~~f---g~~~~~~---~~pdeava~GAA~~aa~ls~~  380 (621)
T CHL00094        328 DIDEVVLVGGSTRIPAIQELVKKLL---GKKPNQS---VNPDEVVAIGAAVQAGVLAGE  380 (621)
T ss_pred             hCcEEEEECCccCChHHHHHHHHHh---CCCcCcC---CCchhHHHhhhHHHHHHhcCC
Confidence            3579999999999999999998876   3332222   345888999999988777764

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=85.34  E-value=5.3  Score=37.72  Aligned_cols=60  Identities=15%  Similarity=0.169  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHhC-------CC-eEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHH
Q psy9394         249 VLTFKCIAALKNTG-------IN-KLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM  314 (339)
Q Consensus       249 ~l~~~~~~~~~~~~-------~~-~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~  314 (339)
                      .+++.+++..++.+       .+ .|+|+||.++=..+.+.+.+.+   +.++.+..   .-+..++.|++.+.
T Consensus       254 ~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~---~~~v~~~~---~P~~ava~Gaa~~~  321 (336)
T PRK13928        254 AIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET---KVPVYIAE---DPISCVALGTGKML  321 (336)
T ss_pred             HHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH---CCCceecC---CHHHHHHHHHHHHH
Confidence            34444455554443       23 6999999999999999998876   45555443   23566888887775

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=84.82  E-value=4.7  Score=41.39  Aligned_cols=65  Identities=17%  Similarity=0.109  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhC-----CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         250 LTFKCIAALKNTG-----INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       250 l~~~~~~~~~~~~-----~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      +.+.++++++..+     ++.|+|+||.+.-..+++.+.+.+   +..+..+   ...|..++.|+|.+.....+.
T Consensus       307 ~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f---~~~~~~~---~~pdeava~GAa~~aa~l~~~  376 (595)
T TIGR02350       307 TKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFF---GKEPNKS---VNPDEVVAIGAAIQGGVLKGD  376 (595)
T ss_pred             HHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHh---CCcccCC---cCcHHHHHHHHHHHHHHhcCC
Confidence            3444444444433     579999999999999999998876   3333322   356889999999988776664

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>PRK13324 pantothenate kinase; Reviewed

Probab=84.45  E-value=17  Score=33.11  Aligned_cols=67  Identities=15%  Similarity=0.251  Sum_probs=44.8

Q ss_pred             EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEE-eC
Q psy9394           3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAY-TR   81 (339)
Q Consensus         3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~-~~   81 (339)
                      +|.||.++..++.++.+++  +++...++...+             ..+....+...+..++++.++++.+++.+++ +.
T Consensus         2 iL~iDiGNT~ik~gl~~~~--~~~~~~r~~t~~-------------~~~t~de~~~~l~~~~~~~~~~~~~i~~viisSV   66 (258)
T PRK13324          2 LLVMDMGNSHIHIGVFDGD--RIVSQIRYATSS-------------VDSTSDQMGVFLRQALRENSVDLGKIDGCGISSV   66 (258)
T ss_pred             EEEEEeCCCceEEEEEECC--EEEEEEEEecCc-------------cccchHHHHHHHHHHHHhcCCCccCCCeEEEEeC
Confidence            7999999999999999977  566543332201             0122334555677888888888888886654 44


Q ss_pred             CCC
Q psy9394          82 GPG   84 (339)
Q Consensus        82 gPG   84 (339)
                      -|-
T Consensus        67 vP~   69 (258)
T PRK13324         67 VPH   69 (258)
T ss_pred             cch
Confidence            463

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=84.24  E-value=57  Score=34.05  Aligned_cols=53  Identities=17%  Similarity=0.202  Sum_probs=40.7

Q ss_pred             CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         262 GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       262 ~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      .+..|+|+||.+.-..+++.+.+.+.   .....   ...-|..+++|+|.+..+..+.
T Consensus       353 dId~VvLVGGssriP~V~~~l~~~fg---~~~~~---~~nPdeaVA~GAAi~a~~l~~~  405 (657)
T PTZ00186        353 EINDVVLVGGMTRMPKVVEEVKKFFQ---KDPFR---GVNPDEAVALGAATLGGVLRGD  405 (657)
T ss_pred             hCCEEEEECCcccChHHHHHHHHHhC---CCccc---cCCCchHHHHhHHHHHHHhccc
Confidence            36799999999999999999998763   22221   2456788999999998776664

>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]

Probab=83.91  E-value=34  Score=31.23  Aligned_cols=39  Identities=23%  Similarity=0.390  Sum_probs=34.3

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEc
Q psy9394         232 KKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVG  270 (339)
Q Consensus       232 ~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laG  270 (339)
                      .....|+|-.+-+.+...+.+.+....+++|.+.|+-+|
T Consensus       248 ~~~v~d~A~~~~~~~l~~l~e~I~~~a~r~gL~~Vv~~G  286 (330)
T COG1548         248 EEEVIDLAEKAYNALLELLAENIEEKAKRYGLNTVVATG  286 (330)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhhcc
Confidence            446789999999999999999999999999999998877

>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family

Probab=83.51  E-value=4.8  Score=34.47  Aligned_cols=61  Identities=18%  Similarity=0.271  Sum_probs=44.6

Q ss_pred             EEEecCCCceeEEEEECCCCceeEE-EEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           4 LGIESSCDDSGLALYDTHIKNLRSH-VICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         4 Lgidts~~~~~~al~~~~~~~i~~~-~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      +|||.+...+=+++++++ ..++.. +..|.               ...-...+...+++++++.++++++++.|.++
T Consensus         2 igIDvGGT~TD~v~~d~~-~~~~~~~K~~Tt---------------~~d~~~gi~~al~~l~~~~~~~~~~i~~v~~g   63 (176)
T PF05378_consen    2 IGIDVGGTFTDAVLLDED-TGVVATAKVPTT---------------PDDPAEGILEALDALLEESGIDPSDIDRVRHG   63 (176)
T ss_pred             eeEecCCCcEEEEEEeCC-CCEEEEEEeCCC---------------CcCHHHHHHHHHHhhhcccCCChhhCcEEEec
Confidence            699999998988888876 345543 33322               12345667889999999999988899888765

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=83.28  E-value=6.6  Score=36.99  Aligned_cols=44  Identities=18%  Similarity=0.137  Sum_probs=34.8

Q ss_pred             eEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHH
Q psy9394         265 KLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM  314 (339)
Q Consensus       265 ~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~  314 (339)
                      +|+|+||.++=..+.++|.+.+   +.++.++..   -+..++.|++.+.
T Consensus       282 ~IvL~GGss~ipgl~e~l~~~~---~~~v~~~~~---P~~~va~Ga~~~~  325 (333)
T TIGR00904       282 GIVLTGGGALLRNLDKLLSKET---GLPVIVADD---PLLCVAKGTGKAL  325 (333)
T ss_pred             CEEEECcccchhhHHHHHHHHH---CCCceecCC---hHHHHHHHHHHHH
Confidence            7999999999999999998876   566665542   2677888888775

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=83.03  E-value=5.8  Score=37.34  Aligned_cols=45  Identities=18%  Similarity=0.113  Sum_probs=34.7

Q ss_pred             eEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHH
Q psy9394         265 KLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMR  315 (339)
Q Consensus       265 ~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~  315 (339)
                      +|+|+||.++=..+.++|.+.+   +.++.+..   ..+..++.|++.+..
T Consensus       279 ~IvL~GG~s~ipgl~~~l~~~~---~~~v~~~~---~P~~ava~Ga~~~~~  323 (334)
T PRK13927        279 GIVLTGGGALLRGLDKLLSEET---GLPVHVAE---DPLTCVARGTGKALE  323 (334)
T ss_pred             CEEEECchhhhhHHHHHHHHHH---CCCcEecC---CHHHHHHHHHHHHHh
Confidence            5999999999999999999876   45555543   237778888877753

>PRK13411 molecular chaperone DnaK; Provisional

Probab=82.48  E-value=4.3  Score=42.18  Aligned_cols=66  Identities=15%  Similarity=0.139  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhC-----CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         250 LTFKCIAALKNTG-----INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       250 l~~~~~~~~~~~~-----~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      +.+.++++++..+     ++.|+|+||.+.-..+++.|.+.+..  ..+..+   ...|.+++.|+|.+.....+.
T Consensus       310 ~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~--~~~~~~---~npdeaVA~GAAi~aa~l~~~  380 (653)
T PRK13411        310 TIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGG--KQPDRS---VNPDEAVALGAAIQAGVLGGE  380 (653)
T ss_pred             HHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCC--cCcCCC---CCchHHHHHHHHHHHHhhcCC
Confidence            3444555555544     56899999999999999999887521  122222   345899999999988776664

>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria

Probab=82.05  E-value=22  Score=29.09  Aligned_cols=67  Identities=12%  Similarity=0.228  Sum_probs=41.7

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeE--EEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEE
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRS--HVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIA   78 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~--~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia   78 (339)
                      |+|.||+..+.++-+|++..+ +.+.-  .-|.+.+.+..+     +   +......+...+.+++++.+     ||.|+
T Consensus         1 M~vCGVELkgneaii~ll~~~-~~~~~~pdcr~~k~~l~~~-----~---~~~~vr~Fq~~f~kl~~dy~-----Vd~Vv   66 (138)
T PF11215_consen    1 MKVCGVELKGNEAIICLLSLD-DGLFQLPDCRVRKFSLSDD-----N---STEEVRKFQFTFAKLMEDYK-----VDKVV   66 (138)
T ss_pred             CeEEEEEEecCeEEEEEEecC-CCceECCccceeEEEcCCC-----c---cHHHHHHHHHHHHHHHHHcC-----CCEEE
Confidence            999999999999999999765 33432  112222222111     1   23344556667788888654     68888


Q ss_pred             EeC
Q psy9394          79 YTR   81 (339)
Q Consensus        79 ~~~   81 (339)
                      +-.
T Consensus        67 Ik~   69 (138)
T PF11215_consen   67 IKE   69 (138)
T ss_pred             EEe
Confidence            743

>PLN03184 chloroplast Hsp70; Provisional

Probab=81.67  E-value=6.6  Score=41.00  Aligned_cols=52  Identities=13%  Similarity=0.129  Sum_probs=40.6

Q ss_pred             CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         263 INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       263 ~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      ++.|+|+||.+.-..+++.|.+.+   +..+...   ...|.+++.|+|.+.....+.
T Consensus       366 Id~ViLvGGssriP~V~~~i~~~f---g~~~~~~---~npdeaVA~GAAi~aa~ls~~  417 (673)
T PLN03184        366 IDEVILVGGSTRIPAVQELVKKLT---GKDPNVT---VNPDEVVALGAAVQAGVLAGE  417 (673)
T ss_pred             ccEEEEECCccccHHHHHHHHHHh---CCCcccc---cCcchHHHHHHHHHHHHhccC
Confidence            579999999999999999998876   3332222   345889999999988777664

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=81.64  E-value=8.1  Score=36.31  Aligned_cols=45  Identities=18%  Similarity=0.116  Sum_probs=34.8

Q ss_pred             eEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHH
Q psy9394         265 KLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMR  315 (339)
Q Consensus       265 ~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~  315 (339)
                      .|+|+||.++=..+.++|.+.+   +.++.++.   ..+.+++.|++.+..
T Consensus       283 ~IvL~GG~s~ipg~~~~l~~~~---~~~v~~~~---~p~~ava~Ga~~~~~  327 (335)
T PRK13930        283 GIVLTGGGALLRGLDKLLSEET---GLPVHIAE---DPLTCVARGTGKALE  327 (335)
T ss_pred             CEEEECchhcchhHHHHHHHHH---CCCceecC---CHHHHHHHHHHHHHh
Confidence            3999999999999999999876   45555543   346788888887764

>PRK07157 acetate kinase; Provisional

Probab=81.35  E-value=4.1  Score=39.50  Aligned_cols=48  Identities=21%  Similarity=0.206  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHh--CCCeEEEEcchhhhHH-HHHHHHHHHHhCC
Q psy9394         243 LDAIIDVLTFKCIAALKNT--GINKLVVVGGVGANKQ-LRKKLNILKKQYN  290 (339)
Q Consensus       243 q~~l~~~l~~~~~~~~~~~--~~~~v~laGGVa~N~~-l~~~l~~~l~~~~  290 (339)
                      .+.+...+.+-+..+....  +++.|+|+||++-|.. +++++.+.++--|
T Consensus       299 ~d~f~yri~k~Ig~~~a~L~G~vDaiVFTgGIGen~~~vr~~i~~~l~~lG  349 (400)
T PRK07157        299 LDLYAQKIVDYLANYINKIGKKIDAIVFTAGVGENSAFVRELVINKINIPN  349 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCcHHHHHHHHhhccccc
Confidence            3334444444444333333  3899999999999999 9999998875333

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=80.95  E-value=11  Score=35.74  Aligned_cols=44  Identities=11%  Similarity=0.091  Sum_probs=33.1

Q ss_pred             eEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHH
Q psy9394         265 KLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM  314 (339)
Q Consensus       265 ~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~  314 (339)
                      .|+|+||.++=..+.+++.+.+   +..+.+..   .-|..++.|++.+.
T Consensus       281 gIvLtGG~s~lpgl~e~l~~~~---~~~v~~~~---~P~~~Va~Ga~~~~  324 (335)
T PRK13929        281 GVILTGGGALLNGIKEWLSEEI---VVPVHVAA---NPLESVAIGTGRSL  324 (335)
T ss_pred             CEEEEchhhhhhhHHHHHHHHH---CCCceeCC---CHHHHHHHHHHHHH
Confidence            6999999999999999998876   55555542   23567888877764

>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length

Probab=80.88  E-value=3.9  Score=38.70  Aligned_cols=39  Identities=15%  Similarity=0.225  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHh-CCCeEEEEcchhhhHHHHHHHHHHHHh
Q psy9394         250 LTFKCIAALKNT-GINKLVVVGGVGANKQLRKKLNILKKQ  288 (339)
Q Consensus       250 l~~~~~~~~~~~-~~~~v~laGGVa~N~~l~~~l~~~l~~  288 (339)
                      +++.+..+.... ..+.|++||-++.|.-+.+.+.+.+.+
T Consensus       247 i~k~V~~l~~~~~~~~~IilSGr~~~~~~~~~~l~~~l~~  286 (343)
T PF07318_consen  247 IVKAVASLLASVPDPDEIILSGRFSRIPEFRKKLEDRLED  286 (343)
T ss_pred             HHHHHHHHhcccCCCCEEEEeccccccHHHHHHHHHHHHh
Confidence            333333444344 456799999999999999999998864

The function of this family is unknown.

>COG1069 AraB Ribulose kinase [Energy production and conversion]

Probab=80.78  E-value=4.7  Score=40.27  Aligned_cols=77  Identities=9%  Similarity=0.217  Sum_probs=51.3

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      +.+|+|.+|.+.=+++++-..+++++.... .++.+. -...+++-.+.+-++.+..+++.+++++|+++.+|-.|.++
T Consensus         4 ~~iGvDvGTgSaRA~v~D~~~G~~la~a~~-p~~~~~-~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V~gIGvD   80 (544)
T COG1069           4 YVIGVDVGTGSARAGVFDCQTGTLLARAVR-PYPMWQ-PGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADVVGIGVD   80 (544)
T ss_pred             EEEEEeecCCceeEEEEEcCCCcchhhccc-ceeccc-cCccccccCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEc
Confidence            579999999999999998532367763210 111111 11223322345556667789999999999999989888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	339
2ivn_A	330	Structure Of Up1 Protein Length = 330		2e-30
3enh_A	540	Crystal Structure Of Cgi121BUD32KAE1 COMPLEX Length		7e-28
2vwb_A	535	Structure Of The Archaeal Kae1-Bud32 Fusion Protein		8e-28
3eno_A	334	Crystal Structure Of Pyrococcus Furiosus Pcc1 In Co		2e-24

>pdb|2IVN|A Chain A, Structure Of Up1 Protein Length = 330

Iteration: 1
 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 166/344 (48%), Gaps = 29/344 (8%)
Query: 1   MIILGIESSCDDSGLALY--DTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIP 58
           M+ LGIE +    G+ +   D  + N+        + +  E GG+ P+ AA  H + + P
Sbjct: 1   MLALGIEGTAHTLGIGIVSEDKVLANV-------FDTLTTEKGGIHPKEAAEHHARLMKP 53
Query: 59  XXXXXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINKPVIGINHLEGHLL 118
                          ID+IA+++              A ++A+   KP++G+NH   H+ 
Sbjct: 54  LLRKALSEAGVSLDDIDVIAFSQGPGLGPALRVVATAARALAVKYRKPIVGVNHCIAHV- 112
Query: 119 SPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGY 178
                   +  P + L VSGG+TQ++ +   G Y + GETLD   G+  D  A+ L LG+
Sbjct: 113 -EITKMFGVKDP-VGLYVSGGNTQVLALEG-GRYRVFGETLDIGIGNAIDVFARELGLGF 169
Query: 179 PGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANI 238
           PGGP++  ++E G+  I + P  +      + SFSGL T  +      K  S K    ++
Sbjct: 170 PGGPKVEKLAEKGEKYI-ELPYAV---KGMDLSFSGLLTEAIR-----KYRSGKYRVEDL 220
Query: 239 ARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298
           A  F +     L      A+ +T  +++V+VGGV AN +LR+ L I+ +      F P  
Sbjct: 221 AYSFQETAFAALVEVTERAVAHTEKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPY 280
Query: 299 EFCTDNGAMIAFAGAMRIENNYKSESNYEFN---IKPQWKINKI 339
           + C DNGAMIA+ G +R+   YK+  ++      +K +++ +++
Sbjct: 281 DLCRDNGAMIAYTG-LRM---YKAGISFRLEETIVKQKFRTDEV 320

>pdb|3ENH|A Chain A, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX Length = 540

Iteration: 1
 Score =  121 bits (303), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 166/341 (48%), Gaps = 24/341 (7%)
Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKE-YGGVVPELAARTHIQTIIPX 59
           MI LG+E + + +G+ +  +        V+ ++ +++K    G+ P  AA  H +T    
Sbjct: 6   MICLGLEGTAEKTGVGIVTSD-----GEVLFNKTIMYKPPKQGINPREAADHHAETF--P 58
Query: 60  XXXXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINKPVIGINHLEGHLLS 119
                         ID+IA+++             +A +++L++ KP+IG+NH   H+  
Sbjct: 59  KLIKEAFEVVDKNEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEI 118
Query: 120 PFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYP 179
             L+  +   P + L VSGG+TQ+I   S   Y + GETLD A G+  D+ A+ ++L +P
Sbjct: 119 GKLTTEAED-P-LTLYVSGGNTQVIAYVS-KKYRVFGETLDIAVGNCLDQFARYVNLPHP 175
Query: 180 GGPEISLISEFGDPNIYKFPRPMLYT-NNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANI 238
           GGP I  ++  G   +   P    YT    + +FSGL T+ +            +   +I
Sbjct: 176 GGPYIEELARKG-KKLVDLP----YTVKGMDIAFSGLLTAAMRAY------DAGERLEDI 224
Query: 239 ARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298
                +    +LT     AL +T   ++++VGGV AN +LR+ L  + +  N   + P K
Sbjct: 225 CYSLQEYAFSMLTEITERALAHTNKGEVMLVGGVAANNRLREMLKAMCEGQNVDFYVPPK 284
Query: 299 EFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
           EFC DNGAMIA+ G + +  N +  S  E  I P ++ + +
Sbjct: 285 EFCGDNGAMIAWLGLL-MHKNGRWMSLDETKIIPNYRTDMV 324

>pdb|2VWB|A Chain A, Structure Of The Archaeal Kae1-Bud32 Fusion Protein Mj1130: A Model For The Eukaryotic Ekc-Keops Subcomplex Involved In Transcription And Telomere Homeostasis. Length = 535

Iteration: 1
 Score =  120 bits (302), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 166/341 (48%), Gaps = 24/341 (7%)
Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKE-YGGVVPELAARTHIQTIIPX 59
           MI LG+E + + +G+ +  +        V+ ++ +++K    G+ P  AA  H +T    
Sbjct: 1   MICLGLEGTAEKTGVGIVTSD-----GEVLFNKTIMYKPPKQGINPREAADHHAETF--P 53
Query: 60  XXXXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINKPVIGINHLEGHLLS 119
                         ID+IA+++             +A +++L++ KP+IG+NH   H+  
Sbjct: 54  KLIKEAFEVVDKNEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEI 113
Query: 120 PFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYP 179
             L+  +   P + L VSGG+TQ+I   S   Y + GETLD A G+  D+ A+ ++L +P
Sbjct: 114 GKLTTEAED-P-LTLYVSGGNTQVIAYVS-KKYRVFGETLDIAVGNCLDQFARYVNLPHP 170
Query: 180 GGPEISLISEFGDPNIYKFPRPMLYT-NNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANI 238
           GGP I  ++  G   +   P    YT    + +FSGL T+ +            +   +I
Sbjct: 171 GGPYIEELARKG-KKLVDLP----YTVKGMDIAFSGLLTAAMRAY------DAGERLEDI 219
Query: 239 ARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298
                +    +LT     AL +T   ++++VGGV AN +LR+ L  + +  N   + P K
Sbjct: 220 CYSLQEYAFSMLTEITERALAHTNKGEVMLVGGVAANNRLREMLKAMCEGQNVDFYVPPK 279
Query: 299 EFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
           EFC DNGAMIA+ G + +  N +  S  E  I P ++ + +
Sbjct: 280 EFCGDNGAMIAWLGLL-MHKNGRWMSLDETKIIPNYRTDMV 319

>pdb|3ENO|A Chain A, Crystal Structure Of Pyrococcus Furiosus Pcc1 In Complex With Thermoplasma Acidophilum Kae1 Length = 334

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 162/341 (47%), Gaps = 23/341 (6%)
Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHK-EYGGVVPELAARTHIQTIIPX 59
           MI+LG+E +       + D       S ++  ++ +++ + GG+ P  AA  H + I   
Sbjct: 6   MIVLGLEGTAHTISCGIID------ESRILAMESSMYRPKTGGIRPLDAAVHHSEVIDTV 59
Query: 60  XXXXXXXXXXXXXXIDIIAYTRXXXXXXXXXXXXXIACSIALSINKPVIGINHLEGHLLS 119
                         ID+I ++               A +I++   KP+IG+NH  GH+  
Sbjct: 60  ISRALEKAKISIHDIDLIGFSMGPGLAPSLRVTATAARTISVLTGKPIIGVNHPLGHI-- 117
Query: 120 PFLSNNSLTFPFIALLVSGGHTQLIK-VNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGY 178
                 +     + L VSGG+TQ+I  VN  G Y +LGETLD   G+  DK A+   + +
Sbjct: 118 EIGRRVTGAIDPVMLYVSGGNTQVIAHVN--GRYRVLGETLDIGIGNMIDKFAREAGIPF 175
Query: 179 PGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANI 238
           PGGPEI  ++  G   +   P         + +FSG+ T+ L  +K  +  +++    +I
Sbjct: 176 PGGPEIEKLAMKGT-KLLDLP---YSVKGMDTAFSGILTAALQYLKTGQ--AIEDISYSI 229
Query: 239 ARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK 298
                  +++VL      AL  +G +++++ GGV  N++LR  +  + ++     +   +
Sbjct: 230 QETAFAMLVEVLE----RALYVSGKDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDR 285
Query: 299 EFCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKINKI 339
           E+C DNG MIA A  +  ++  +  S  E  + P+++I+++
Sbjct: 286 EYCMDNGIMIAQAALLMYKSGVRM-SVEETAVNPRFRIDEV 325

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	339
2ivn_A	330	O-sialoglycoprotein endopeptidase; UP1 keops compl	1e-152
3eno_A	334	Putative O-sialoglycoprotein endopeptidase; hydrol	1e-149
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	1e-145
2gel_A	231	Putative GRAM negative resuscitation promoting FA;	2e-15
3r6m_A	213	YEAZ, resuscitation promoting factor; actin/HSP70	7e-15
2a6a_A	218	Hypothetical protein TM0874; glycoprotein endopept	1e-13
3vth_A	761	Hydrogenase maturation factor; carbamoyltransfer,	6e-07
3ttc_A	657	HYPF, transcriptional regulatory protein; Zn finge	2e-04

>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* Length = 330

 Score =  430 bits (1107), Expect = e-152
 Identities = 102/334 (30%), Positives = 171/334 (51%), Gaps = 19/334 (5%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           M+ LGIE +    G+ +       + ++V  +      E GG+ P+ AA  H + + PLL
Sbjct: 1   MLALGIEGTAHTLGIGIVSE--DKVLANVFDTL---TTEKGGIHPKEAAEHHARLMKPLL 55

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            K L  + + L  ID+IA+++GPGL  +L V ++ A ++A+   KP++G+NH   H+   
Sbjct: 56  RKALSEAGVSLDDIDVIAFSQGPGLGPALRVVATAARALAVKYRKPIVGVNHCIAHVEIT 115

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            +    +  P + L VSGG+TQ++ +   G Y + GETLD   G+  D  A+ L LG+PG
Sbjct: 116 KMF--GVKDP-VGLYVSGGNTQVLALEG-GRYRVFGETLDIGIGNAIDVFARELGLGFPG 171

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
           GP++  ++E G+    + P  +      + SFSGL T  +   ++ K         ++A 
Sbjct: 172 GPKVEKLAEKGEK-YIELPYAV---KGMDLSFSGLLTEAIRKYRSGKYR-----VEDLAY 222

Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
            F +     L      A+ +T  +++V+VGGV AN +LR+ L I+ +      F P  + 
Sbjct: 223 SFQETAFAALVEVTERAVAHTEKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDL 282

Query: 301 CTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQW 334
           C DNGAMIA+ G    +         E  +K ++
Sbjct: 283 CRDNGAMIAYTGLRMYKAGISF-RLEETIVKQKF 315

>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} Length = 334

 Score =  421 bits (1085), Expect = e-149
 Identities = 94/337 (27%), Positives = 170/337 (50%), Gaps = 21/337 (6%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQ-NLVHKEYGGVVPELAARTHIQTIIPL 59
           MI+LG+E +       + D       S ++  + ++   + GG+ P  AA  H + I  +
Sbjct: 6   MIVLGLEGTAHTISCGIIDE------SRILAMESSMYRPKTGGIRPLDAAVHHSEVIDTV 59

Query: 60  LSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLS 119
           +S+ L+ + + +  ID+I ++ GPGL  SL V ++ A +I++   KP+IG+NH  GH+  
Sbjct: 60  ISRALEKAKISIHDIDLIGFSMGPGLAPSLRVTATAARTISVLTGKPIIGVNHPLGHIEI 119

Query: 120 PFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYP 179
                 +     + L VSGG+TQ+I     G Y +LGETLD   G+  DK A+   + +P
Sbjct: 120 GRRVTGA--IDPVMLYVSGGNTQVIAH-VNGRYRVLGETLDIGIGNMIDKFAREAGIPFP 176

Query: 180 GGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIA 239
           GGPEI  ++  G   +   P  +      + +FSG+ T+ L  +K        +   +I+
Sbjct: 177 GGPEIEKLAMKGTK-LLDLPYSV---KGMDTAFSGILTAALQYLKT------GQAIEDIS 226

Query: 240 RGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKE 299
               +    +L      AL  +G +++++ GGV  N++LR  +  + ++     +   +E
Sbjct: 227 YSIQETAFAMLVEVLERALYVSGKDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDRE 286

Query: 300 FCTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKI 336
           +C DNG MIA A  +  ++  +  S  E  + P+++I
Sbjct: 287 YCMDNGIMIAQAALLMYKSGVRM-SVEETAVNPRFRI 322

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* Length = 540

 Score =  419 bits (1078), Expect = e-145
 Identities = 100/336 (29%), Positives = 171/336 (50%), Gaps = 20/336 (5%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           MI LG+E + + +G+ +  +    +  +      +      G+ P  AA  H +T   L+
Sbjct: 6   MICLGLEGTAEKTGVGIVTSD-GEVLFN---KTIMYKPPKQGINPREAADHHAETFPKLI 61

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
            +  +  +    +ID+IA+++GPGL  SL V +++A +++L++ KP+IG+NH   H+   
Sbjct: 62  KEAFEVVDKN--EIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEIG 119

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPG 180
            L+      P + L VSGG+TQ+I   S   Y + GETLD A G+  D+ A+ ++L +PG
Sbjct: 120 KLTTE-AEDP-LTLYVSGGNTQVIAYVS-KKYRVFGETLDIAVGNCLDQFARYVNLPHPG 176

Query: 181 GPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR 240
           GP I  ++  G   +   P  +      + +FSGL T+ +            +   +I  
Sbjct: 177 GPYIEELARKGKK-LVDLPYTV---KGMDIAFSGLLTAAMRAYDA------GERLEDICY 226

Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEF 300
              +    +LT     AL +T   ++++VGGV AN +LR+ L  + +  N   + P KEF
Sbjct: 227 SLQEYAFSMLTEITERALAHTNKGEVMLVGGVAANNRLREMLKAMCEGQNVDFYVPPKEF 286

Query: 301 CTDNGAMIAFAGAMRIENNYKSESNYEFNIKPQWKI 336
           C DNGAMIA+ G +  +N      + E  I P ++ 
Sbjct: 287 CGDNGAMIAWLGLLMHKNGRWMSLD-ETKIIPNYRT 321

>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A Length = 231

 Score = 73.2 bits (180), Expect = 2e-15
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 24/117 (20%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVP---ELAARTHIQTII 57
           M IL I+++ +   +AL++                      G +    EL  R H Q I+
Sbjct: 1   MRILAIDTATEACSVALWN---------------------NGTINAHFELCPREHTQRIL 39

Query: 58  PLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLE 114
           P++ ++L  S   L +ID +A+ RGPG    + +G  IA  +AL  N P+IG++ L 
Sbjct: 40  PMVQEILAASGASLNEIDALAFGRGPGSFTGVRIGIGIAQGLALGANLPMIGVSTLA 96

>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus} Length = 213

 Score = 71.6 bits (176), Expect = 7e-15
 Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 24/117 (20%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
             IL I+++ ++  +AL              +  ++ +       E+A R H + ++P++
Sbjct: 2   AKILAIDTATENCSVALLV------------NDQVISRS------EVAPRDHTKKVLPMV 43

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGS---LLVGSSIACSIALSINKPVIGINHLE 114
            ++LK + L L+ +D +A+ RG   PGS   + +G  IA  +A     P+IG++ L 
Sbjct: 44  DEVLKEAGLTLQDLDALAFGRG---PGSFTGVRIGIGIAQGLAFGAELPMIGVSTLA 97

>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9 Length = 218

 Score = 68.2 bits (167), Expect = 1e-13
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 25/117 (21%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           M +L +++S     + L               ++L              + H + +  ++
Sbjct: 13  MNVLALDTS-QRIRIGLRK------------GEDLFEIS------YTGEKKHAEILPVVV 53

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGS---LLVGSSIACSIALSINKPVIGINHLE 114
            KLL   +L++K +D++    G   PG    L VG +    +    + PV  +N  E
Sbjct: 54  KKLLDELDLKVKDLDVVGVGIG---PGGLTGLRVGIATVVGLVSPYDIPVAPLNSFE 107

>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A Length = 761

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 19/178 (10%)

Query: 159 LDDAAGDTFDKIAKMLDL----GYPGGPEISLISE-FGDPNIYKFPRPMLYTNNFNFSFS 213
              + G  FD +A ++ +     + G   + L S        Y++   +L  + +     
Sbjct: 593 YVSSMGRFFDAVAALIGVRKEVLFEGQAAMELESLMAESEEYYEYE--ILKEDRYVIDPE 650

Query: 214 GLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVG 273
            +   +              EK+ I+  F + +++          K TGINK+V+ GG  
Sbjct: 651 LILRQIYEDYMK------GFEKSYISAKFHNTVVNFTYDLANLIRKETGINKVVLSGGSF 704

Query: 274 ANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF----AGAMRIENNYKSESNYE 327
            N+ L ++L        + V+   K  C D G  I+          +E +  S   +E
Sbjct: 705 QNRYLLRRLIEKLSLSGFEVYSNSKVPCNDGG--ISLGQAVIANKILEGSAWSHPQFE 760

>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A Length = 657

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 28/161 (17%)

Query: 162 AAGDTFDKIAKMLDLG-----YPGGPEISL--ISEFGDPNIYKFPRPMLYTNNFNFSFSG 214
           + G  FD +A  L        Y G    +L  ++   D   +      +   +     + 
Sbjct: 504 SCGRLFDAVAAALGCAPATLSYEGEAACALEALAASCDGVTHPVT---MPRVDNQLDLAT 560

Query: 215 LKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGA 274
                LN          +      A  F DA+               GI  LV  GGV  
Sbjct: 561 FWQQWLN---------WQAPVNQRAWAFHDALAQGFAALMREQATMRGITTLVFSGGVIH 611

Query: 275 NKQLRKKL-NILKKQYNYTVFYPKKEFCTDNG-----AMIA 309
           N+ LR +L + L    ++T+ +P+     D G      +IA
Sbjct: 612 NRLLRARLAHYLA---DFTLLFPQSLPAGDGGLSLGQGVIA 649

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	339
3eno_A	334	Putative O-sialoglycoprotein endopeptidase; hydrol	100.0
2ivn_A	330	O-sialoglycoprotein endopeptidase; UP1 keops compl	100.0
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	100.0
3ven_A	576	O-carbamoyltransferase TOBZ; antibiotic biosynthes	100.0
3vth_A	761	Hydrogenase maturation factor; carbamoyltransfer,	100.0
3ttc_A	657	HYPF, transcriptional regulatory protein; Zn finge	100.0
4g9i_A	772	Hydrogenase maturation protein HYPF; zinc finger,	100.0
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	99.96
3r6m_A	213	YEAZ, resuscitation promoting factor; actin/HSP70	99.9
2gel_A	231	Putative GRAM negative resuscitation promoting FA;	99.89
2a6a_A	218	Hypothetical protein TM0874; glycoprotein endopept	99.87
1hux_A	270	Activator of (R)-2-hydroxyglutaryl-COA dehydratase	99.81
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	99.77
2i7n_A	360	Pantothenate kinase 1; PANK, transferase; HET: ACO	99.3
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	98.36
3qbx_A	371	Anhydro-N-acetylmuramic acid kinase; acetate and s	97.94
2qm1_A	326	Glucokinase; alpha-beta structure, putative helix-	97.89
2gup_A	292	ROK family protein; sugar kinase, streptococcus pn	97.86
2aa4_A	289	Mannac kinase, putative N-acetylmannosamine kinase	97.68
3cqy_A	370	Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1	97.55
2hoe_A	380	N-acetylglucosamine kinase; TM1224, structural gen	97.48
2ch5_A	347	NAGK protein; transferase, N-acetylglucosamine, gl	97.47
4htl_A	297	Beta-glucoside kinase; structural genomics, sugar	97.38
4db3_A	327	Glcnac kinase, N-acetyl-D-glucosamine kinase; stru	97.21
3vov_A	302	Glucokinase, hexokinase; ROK, sugar kinase, transf	97.16
1z05_A	429	Transcriptional regulator, ROK family; structural	97.14
1z6r_A	406	MLC protein; transcriptional repressor, ROK family	97.12
1saz_A	381	Probable butyrate kinase 2; askha (acetate and sug	97.08
3djc_A	266	Type III pantothenate kinase; structural genomics,	97.04
3r8e_A	321	Hypothetical sugar kinase; ribonuclease H-like mot	96.86
2yhw_A	343	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N	96.8
1zbs_A	291	Hypothetical protein PG1100; alpha-beta protein.,	96.74
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	96.61
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	96.56
3ezw_A	526	Glycerol kinase; glycerol metabolism, allosteric r	96.5
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	96.48
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	96.47
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	96.46
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	96.39
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	96.32
3vgl_A	321	Glucokinase; ROK family, transferase; HET: BGC ANP	96.3
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	96.28
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	96.24
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	96.19
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	96.08
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	95.93
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	95.89
3htv_A	310	D-allose kinase, allokinase; NP_418508.1, structur	95.76
2h3g_X	268	Biosynthetic protein; pantothenate kinase, anthrax	95.7
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	95.5
3ezw_A	526	Glycerol kinase; glycerol metabolism, allosteric r	95.4
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	95.26
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	95.06
3epq_A	302	Putative fructokinase; SCRK, ADP binding, PSI2, MC	94.86
2e2o_A	299	Hexokinase; acetate and sugar kinases, HSP70, acti	94.82
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	94.39
4bc3_A	538	Xylulose kinase; transferase, glucuronate xyluloki	94.36
2ap1_A	327	Putative regulator protein; zinc binding protein,	94.31
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	94.25
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	94.08
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	93.81
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	93.81
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	93.8
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	93.67
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	93.5
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	93.46
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	93.43
1zc6_A	305	Probable N-acetylglucosamine kinase; NESG, Q7NU07_	93.24
1hjr_A	158	Holliday junction resolvase (RUVC); site-specific	93.07
4ep4_A	166	Crossover junction endodeoxyribonuclease RUVC; res	92.98
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	92.81
1iv0_A	98	Hypothetical protein; rnaseh-like, YQGF, structura	92.8
1vhx_A	150	Putative holliday junction resolvase; structural g	92.77
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	92.63
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	91.73
4bc3_A	538	Xylulose kinase; transferase, glucuronate xyluloki	91.55
3bex_A	249	Type III pantothenate kinase; actin-like fold, ATP	91.38
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	91.19
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	91.07
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	90.95
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	90.09
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	89.89
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	89.74
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	89.13
3mcp_A	366	Glucokinase; structural genomics, joint center for	88.89
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	88.86
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	87.51
1bdg_A	451	Hexokinase; phosphotransferase; HET: GLC; 2.60A {S	86.89
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	85.58
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	84.55
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	83.49
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	81.86
2zgy_A	320	Plasmid segregation protein PARM; plasmid partitio	81.59
1woq_A	267	Inorganic polyphosphate/ATP-glucomannokinase; tran	81.56
2w36_A	225	Endonuclease V; hypoxanthine, endonuclease, endonu	81.54

>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}

Probab=100.00  E-value=2.8e-68  Score=501.25  Aligned_cols=320  Identities=29%  Similarity=0.513  Sum_probs=292.8

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |+|||||||++++++||++++  +++++++.+   ++.+|+|..|+.+.++|.+.+.+++++||+++|++++|||.|+|+
T Consensus         6 M~iLgIdts~~~~svAl~~~~--~i~~~~~~~---~~~~~gGv~p~~a~~~H~~~l~~~i~~~L~~ag~~~~did~Iav~   80 (334)
T 3eno_A            6 MIVLGLEGTAHTISCGIIDES--RILAMESSM---YRPKTGGIRPLDAAVHHSEVIDTVISRALEKAKISIHDIDLIGFS   80 (334)
T ss_dssp             CEEEEEECSSSEEEEEEEESS--CCCEEEEEE---CCCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCEEEEE
T ss_pred             ceEEEEECCCcCeEEEEEECC--EEEEEEEEe---eccccCCcCcchHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence            899999999999999999988  688865432   466899999999999999999999999999999999999999999


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccC
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLD  160 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~  160 (339)
                      .|||+||++|+|+.++|+|+..+++|+++|+||++|++++++.+++. +| +++++|||++.++.+++ +++++++++.+
T Consensus        81 ~gPG~~t~lrvg~~~ak~La~~~~~Pl~~v~hl~aHa~sa~~~s~~~-~p-l~L~vsGg~t~l~~~~~-~~~~~lg~t~d  157 (334)
T 3eno_A           81 MGPGLAPSLRVTATAARTISVLTGKPIIGVNHPLGHIEIGRRVTGAI-DP-VMLYVSGGNTQVIAHVN-GRYRVLGETLD  157 (334)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHHHHTCS-SC-EEEEESSSCEEEEEECS-SBEEEEEEBSS
T ss_pred             cCCCCcchHHHHHHHHHHHhhccCCCeEEeccHHHHHHHHHhcCCCC-CC-EEEEEECCCcEEEEEeC-CEEEEeccCCC
Confidence            99999999999999999999999999999999999999999988873 56 89999999999988864 89999999999


Q ss_pred             CcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHH
Q psy9394         161 DAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR  240 (339)
Q Consensus       161 ~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa  240 (339)
                      +|+||+||++|++||+.||||+++|++|.++++ .+++|+++   .+++|+|+++++++.+.+.+.      .+++|||+
T Consensus       158 ~S~G~~fD~vA~~LGl~y~g~~~le~lA~~g~~-~~~~~~~~---~~~~~sfsgl~~~v~~~l~~g------~~~~diAa  227 (334)
T 3eno_A          158 IGIGNMIDKFAREAGIPFPGGPEIEKLAMKGTK-LLDLPYSV---KGMDTAFSGILTAALQYLKTG------QAIEDISY  227 (334)
T ss_dssp             CCHHHHHHHHHTTTTCCSCHHHHHHTTGGGCCS-CCCCCCCE---ETTEECCHHHHHHHHHHHHTT------CCHHHHHH
T ss_pred             ccHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCC-CCCCceec---cCceEchHHHHHHHHHHHHcC------CCHHHHHH
Confidence            999999999999999999999999999999876 44455443   245899999999888887653      57899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       241 ~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      +||+++++.++++++++.++++.++||++||||+|+.++++|.+++...|+++|+||..||||||+||||+++.+++.|.
T Consensus       228 sfq~~l~~~l~~~~~~a~~~~g~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~g~  307 (334)
T 3eno_A          228 SIQETAFAMLVEVLERALYVSGKDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNGIMIAQAALLMYKSGV  307 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTSCCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999998889999999999999999999999999999998


Q ss_pred             CCCCCcccccccCCCCCCC
Q psy9394         321 KSESNYEFNIKPQWKINKI  339 (339)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~  339 (339)
                      +.+. .++++.|+|+++++
T Consensus       308 ~~~~-~~~~~~~~~~~~~~  325 (334)
T 3eno_A          308 RMSV-EETAVNPRFRIDEV  325 (334)
T ss_dssp             CCCG-GGCCCCTTCCGGGS
T ss_pred             CCCc-ccCccCCCCChhhc
Confidence            8773 48999999999875

>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*

Probab=100.00  E-value=9.3e-63  Score=463.88  Aligned_cols=319  Identities=32%  Similarity=0.559  Sum_probs=287.7

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |++||||||++++++||++++  ++++.+..++   +.+++|..|+.+.++|.+.+.++++++|+++|++++|||.|+++
T Consensus         1 M~iLgIdts~~~~~val~~~g--~i~~~~~~~~---~~~~gg~~p~~~~~~h~~~l~~~i~~~L~~agi~~~did~Ia~~   75 (330)
T 2ivn_A            1 MLALGIEGTAHTLGIGIVSED--KVLANVFDTL---TTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFS   75 (330)
T ss_dssp             CCEEEEECSSSEEEEEEECSS--CEEEEEEEEC---CCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEEE
T ss_pred             CEEEEEEccCCCeEEEEEECC--EEEEEEEEEe---ecccCCcCchhhHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEE
Confidence            899999999999999999988  6887654332   46788999999999999999999999999999999999999999


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccC
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLD  160 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~  160 (339)
                      .|||+||++|+|+.++|+|+..+++|+++|+||+||++++++ +++. +| +++++|||+++++.++ .++++.++.+.+
T Consensus        76 ~GPG~~~~lrvg~~~ak~la~~~~~pl~~v~h~~aHa~~a~~-~~~~-~~-~~l~v~GG~t~~i~~~-~~~~~~lg~t~d  151 (330)
T 2ivn_A           76 QGPGLGPALRVVATAARALAVKYRKPIVGVNHCIAHVEITKM-FGVK-DP-VGLYVSGGNTQVLALE-GGRYRVFGETLD  151 (330)
T ss_dssp             EESSCHHHHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHGGGG-GTCC-SC-EEEEECSSCEEEEEEE-TTEEEEEEEBSS
T ss_pred             CCCCchHHHHHHHHHHHHHHHHcCCCEEeeCcHHHHHHHHhh-cCCC-CC-eEEEEcCCCceEEEEc-CCeEEEEEeecC
Confidence            999999999999999999999999999999999999999999 8763 56 7899999999999886 689999999999


Q ss_pred             CcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHH
Q psy9394         161 DAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR  240 (339)
Q Consensus       161 ~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa  240 (339)
                      .|+||+||++|++||+.+++++++|++|.++++ .+.+|.++.   +|+|+|+++++++.+.+.+.     ..+++|||+
T Consensus       152 ds~Gr~fD~vA~~LGl~~~~~~~le~lA~~g~~-~~~~p~~i~---~~~fsfs~l~~~v~~~~~~g-----~~~~~diAa  222 (330)
T 2ivn_A          152 IGIGNAIDVFARELGLGFPGGPKVEKLAEKGEK-YIELPYAVK---GMDLSFSGLLTEAIRKYRSG-----KYRVEDLAY  222 (330)
T ss_dssp             SCHHHHHHHHHHHHTCCSCHHHHHHHHHHTCCS-CCCCCCCEE---TTEECCHHHHHHHHHHHHHT-----CSCHHHHHH
T ss_pred             chhHHHHHHHHHHhCCCCCcHHHHHHHhhcCCC-cCCCCcccC---CCeEehHHHHHHHHHHHHcC-----CCCHHHHHH
Confidence            999999999999999999999999999998875 344565542   46899999998888777642     146899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       241 ~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      +||+++++.+.++++++.++++.++|||+||||+|+.++++|.+++++.|+++|+||..||||||+||||+++.+++.|.
T Consensus       223 ~fq~~l~~~l~~~~~~~~~~~~~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~~~  302 (330)
T 2ivn_A          223 SFQETAFAALVEVTERAVAHTEKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMYKAGI  302 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999998778999999988899999999999999998887


Q ss_pred             CCCCCc-ccccccCCCCCCC
Q psy9394         321 KSESNY-EFNIKPQWKINKI  339 (339)
Q Consensus       321 ~~~~~~-~~~~~~~~~~~~~  339 (339)
                      +.+  + ++++.|+|+++++
T Consensus       303 ~~~--~~~~~~~p~~~~~~~  320 (330)
T 2ivn_A          303 SFR--LEETIVKQKFRTDEV  320 (330)
T ss_dssp             CCC--GGGGSCCTTCCGGGS
T ss_pred             CCC--cccCccCCCCCccce
Confidence            766  5 7999999999864

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=100.00  E-value=1.9e-61  Score=483.39  Aligned_cols=319  Identities=31%  Similarity=0.528  Sum_probs=292.9

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |+|||||||++++++||++++ +++++..+.   ..+.+|||.+|+.++++|.+.+.++++++|++  ++++|||.|||+
T Consensus         6 m~iL~i~ts~~~~~~al~~~~-~~~~~~~~~---~~~~~~gg~~p~~a~~~h~~~l~~~i~~~l~~--~~~~~id~ia~~   79 (540)
T 3en9_A            6 MICLGLEGTAEKTGVGIVTSD-GEVLFNKTI---MYKPPKQGINPREAADHHAETFPKLIKEAFEV--VDKNEIDLIAFS   79 (540)
T ss_dssp             CEEEEEECSSSEEEEEEEETT-SCEEEEEEE---ECCCCCSSSSCCCHHHHHHHHHHHHHHHHHHH--SCGGGCCEEEEE
T ss_pred             ceEEEEEcCccceEEEEEECC-CeEEEEEEE---eecCCCCCCChHHHHHHHHHHHHHHHHHHHHh--CCHhHCcEEEEe
Confidence            799999999999999999987 678887643   35789999999999999999999999999999  889999999999


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccC
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLD  160 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~  160 (339)
                      .|||++|++|+|+.+||+||..+++|+++|+||+||++++++++++ .+| +++++||||++++.+.+ +++++++.+.+
T Consensus        80 ~gPG~~~~l~vg~~~ak~la~~~~~p~~~v~h~~aH~~~~~~~~~~-~~p-~~l~vsGg~t~~~~~~~-~~~~~lg~t~d  156 (540)
T 3en9_A           80 QGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEIGKLTTEA-EDP-LTLYVSGGNTQVIAYVS-KKYRVFGETLD  156 (540)
T ss_dssp             EESSCHHHHHHHHHHHHHHHHHHTCCEEEEEHHHHHHHHHHHHSSC-SSC-EEEEECSSCEEEEEEET-TEEEEEEEBSS
T ss_pred             cCCCchhhHHHHHHHHHHHHHHhCCCeeEeccHHHHHHHHHHhcCC-CCC-cEEEEcCCCcEEEEEeC-CceEEEeeccc
Confidence            9999999999999999999999999999999999999999999886 367 99999999999998875 79999999999


Q ss_pred             CcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHH
Q psy9394         161 DAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIAR  240 (339)
Q Consensus       161 ~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa  240 (339)
                      +|+|++||++|++||++||||+++|.+|.+|+. .+++|++.   .+++|+|+++++++.+.+++.      .+++|||+
T Consensus       157 ~s~G~~~D~~a~~lgl~~~gg~~ie~lA~~g~~-~~~~p~~~---~~~~~sfsgl~~~~~~~~~~~------~~~~~ia~  226 (540)
T 3en9_A          157 IAVGNCLDQFARYVNLPHPGGPYIEELARKGKK-LVDLPYTV---KGMDIAFSGLLTAAMRAYDAG------ERLEDICY  226 (540)
T ss_dssp             SCHHHHHHHHHHHTTCCSSCHHHHHHHHHTCCC-CCCCCCCE---ETTEECCHHHHHHHHHHHHTT------CCHHHHHH
T ss_pred             hHhHHHHHHHHHHcCCCCCCHHHHHHHHHcCCc-cCcCCCCC---CCcceecHHHHHHHHHHHHcC------CCHHHHHH
Confidence            999999999999999999999999999999873 45556553   356899999999998887643      57899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       241 ~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      +||+++++.++++++++.++++.++||++||||+|+.|+++|.+++.+.|+++|+||+.+|+|||+|+|++++..++.|.
T Consensus       227 ~fq~~~~~~l~~~~~~a~~~~~~~~~~~~GGVa~N~~l~~~l~~~~~~~~~~~~~p~~~~~~Dngamia~~~~~~~~~g~  306 (540)
T 3en9_A          227 SLQEYAFSMLTEITERALAHTNKGEVMLVGGVAANNRLREMLKAMCEGQNVDFYVPPKEFCGDNGAMIAWLGLLMHKNGR  306 (540)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSEEEEESGGGGCHHHHHHHHHHHHHTTCEEECCCHHHHSSCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeEEEeCcHHhHHHHHHHHHHHHHhcCCEEEeCCCcCCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999899999999988999999999999999999998


Q ss_pred             CCCCCcccccccCCCCCCC
Q psy9394         321 KSESNYEFNIKPQWKINKI  339 (339)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~  339 (339)
                      +++. .+..+.|+|+++++
T Consensus       307 ~s~l-~~~~v~pr~~~dev  324 (540)
T 3en9_A          307 WMSL-DETKIIPNYRTDMV  324 (540)
T ss_dssp             CCCG-GGCCCCTTCCSTTS
T ss_pred             CCcc-cccccccccccccc
Confidence            8874 58999999998864

>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*

Probab=100.00  E-value=1.7e-47  Score=377.53  Aligned_cols=294  Identities=16%  Similarity=0.152  Sum_probs=223.2

Q ss_pred             EEEEecCCCceeEEEEECCCCceeE---EEEeeecccccccCCccchHHHHHHHHH-H-HHHHHHHHHhCCCCCCCcCEE
Q psy9394           3 ILGIESSCDDSGLALYDTHIKNLRS---HVICSQNLVHKEYGGVVPELAARTHIQT-I-IPLLSKLLKNSNLELKKIDII   77 (339)
Q Consensus         3 iLgidts~~~~~~al~~~~~~~i~~---~~~~~~~~~~~~~~G~~~~~~~~~~~~~-l-~~~i~~~l~~~~i~~~did~i   77 (339)
                      .|||+...||.++||++||  +|++   +||++|+|                |... + ..+|++||+++|++++|||.|
T Consensus        12 ~~g~~~~~HDsaAaLv~DG--~ivaA~eEERftR~K----------------h~~~~fP~~AI~~cL~~AGi~~~DID~V   73 (576)
T 3ven_A           12 LNGWPRDFHDASAALLVDG--RIAAFAEEERLTRKK----------------HGYNTAPVQAAAFCLAQAGLTVDDLDAV   73 (576)
T ss_dssp             EECCSSSCCCCEEEEEETT--EEEEEEEHHHHHCCT----------------TCTTSCCHHHHHHHHHHHTCCGGGCSEE
T ss_pred             hccccccCCCceEEEEECC--EEEEEEEEEEeeeec----------------ccCCCCCHHHHHHHHHHcCCCHHHCcEE
Confidence            4678888999999999999  7886   46888765                3222 2 257999999999999999999


Q ss_pred             EEeCC-CCCCchh-------HHHHHH----HHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCC---eeE
Q psy9394          78 AYTRG-PGLPGSL-------LVGSSI----ACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGG---HTQ  142 (339)
Q Consensus        78 a~~~g-PG~~t~l-------r~g~~~----ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg---~~~  142 (339)
                      |++.+ |+....+       |.....    ++.++...+.|++.|+||.+||+|+++.|+|  ++++++++||+   ++.
T Consensus        74 a~~~~~P~l~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~l~~v~HHlaHAaSAf~~Spf--e~aaVLvvDG~Ge~~T~  151 (576)
T 3ven_A           74 AFGWDLPAMYRERLGGWPHSDSEALDILLPRDVFPRRTDPPLHFVQHHLAHAASAYYFSGE--DRGAVLIVDGQGEEECV  151 (576)
T ss_dssp             EESSCHHHHHHHHSSCCCCCHHHHHHHHSCTTTSCCSSCCCEEECCHHHHHHHHHHTTSSC--SEEEEEEECSCSSSEEE
T ss_pred             EEECCCccchhhhhhcchhhhhhhhhhhhhHHhcccccCCCeEecCHHHHHHHHhhhcCCC--CceEEEEEeCCCCCceE
Confidence            99999 8643221       211111    2233333467999999999999999999998  48999999997   677


Q ss_pred             EEEecCCcceEEeeec-cCCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCC-cccCCCccccCCCeee----------
Q psy9394         143 LIKVNSIGNYFLLGET-LDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPN-IYKFPRPMLYTNNFNF----------  210 (339)
Q Consensus       143 ~~~~~~~~~~~~~~~~-~~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~-~~~~~~~l~~~~~~~~----------  210 (339)
                      ++...+.++++++++. .++|+|.+|+++|++|||.+++|+++|+||+||+|. .+ ++..+...+...+          
T Consensus       152 ~v~~~~~~~l~~l~~~~~p~SLG~~Y~~vT~~LGF~~~gE~KVMGLApYG~p~~~~-~~~l~~~dg~f~~~~~~~~~~~~  230 (576)
T 3ven_A          152 TLAHAEGGKITVLDTVPGAWSLGFFYEHVSEYTGLGGDNPGKLMGLAAHGTTVDET-LSAFAFDSDGYRLNLIDPQARDP  230 (576)
T ss_dssp             EEEEEETTEEEEEEEEEGGGCHHHHHHHHHHHTTSCTTCHHHHHHHHTTSCCSCTT-TTTEEEETTEEEETTSCTTCCCT
T ss_pred             EEEEeeCCEEEEEEEeccCChHHHHHHHHHHHcCCCCCCccceeEEcCCCCCchhh-hHhhccCCCceeeeccccccccc
Confidence            7776667899999885 789999999999999999999999999999999984 33 3321211111122          


Q ss_pred             ----ecchHHHH----HHHH-----------HHh-hc-----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q psy9394         211 ----SFSGLKTS----VLNV-----------IKN-IK-----LDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINK  265 (339)
Q Consensus       211 ----~~~~l~~~----~~~~-----------~~~-~~-----~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~  265 (339)
                          +|+++...    ....           +.. .+     +++..+.+.|||++||+++++.++++++++.+++++++
T Consensus       231 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~R~~~~~~~~~~~~~~~dIAasfQ~~l~~~L~~~~~~a~~~tg~~~  310 (576)
T 3ven_A          231 EDWDEYSVTERAWFAHLERIYRLPPNEFVRRYDPAKGRVVRDTRRDPYEYRDLAATAQAALERAVFGLADSVLARTGERT  310 (576)
T ss_dssp             TSSSSHHHHHHHHHHHHHHHSSSCCCCEEEEEETTTTEEEEEESSCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred             cccccccccccccccchhcccccchHHHHHHhcccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence                33322110    0111           000 00     11223458999999999999999999999999999999


Q ss_pred             EEEEcchhhhHHHHHHHHHHHHhCCc-EEEccCCCCCChhHHHHHHHHHHHHHhcCCC
Q psy9394         266 LVVVGGVGANKQLRKKLNILKKQYNY-TVFYPKKEFCTDNGAMIAFAGAMRIENNYKS  322 (339)
Q Consensus       266 v~laGGVa~N~~l~~~l~~~l~~~~~-~v~~~~~~~~~D~G~aiG~a~~~~~~~~~~~  322 (339)
                      |||+||||+|+.||++|.+.   .++ ++|+||  +|||||+||||+++..++.|...
T Consensus       311 l~LaGGVa~N~~L~~~l~~~---~~~~~v~vpp--~~~D~G~aiGqA~~a~~~~g~~~  363 (576)
T 3ven_A          311 LFVAGGVGLNATMNGKLLTR---STVDKMFVPP--VASDIGVSLGAAAAVAVELGDRI  363 (576)
T ss_dssp             EEEESGGGGCHHHHHHHHTS---TTCSEEECCT--TCSGGGHHHHHHHHHHHHTTCCC
T ss_pred             EEecchHHHHHHHHHHHHHh---cCCCeEEeCC--CCCchHHHHHHHHHHHHHcCCCC
Confidence            99999999999999998764   356 899997  79999999999999988888654

>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A

Probab=100.00  E-value=1.5e-37  Score=316.70  Aligned_cols=256  Identities=18%  Similarity=0.217  Sum_probs=204.0

Q ss_pred             cccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHh
Q psy9394          38 KEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHL  117 (339)
Q Consensus        38 ~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa  117 (339)
                      ++|+||+.+..+.++++.....+..+++   +   +++.|++|.||+|++         ..++..++.|++.|+||+||+
T Consensus       424 s~hiGdl~~~~~~~~~~~~~~~~~~l~~---~---~p~~i~~D~HP~y~s---------t~~a~~~~~p~~~VQHHhAH~  488 (761)
T 3vth_A          424 SHHIGDLDNEKAFNYYIEQIERYKKLFR---V---DPEVVAHDMHKGYLS---------TQYAKSLDLPKIEVQHHHAHI  488 (761)
T ss_dssp             CCCCBCCCSHHHHHHHHHHHHHHHHHTT---C---CCSEEEEESCTTSHH---------HHHHHHSSSCEEEECHHHHHH
T ss_pred             ecCccCCCCHHHHHHHHHHHHHHHHHhC---C---CCCEEEEeCCCCchH---------HHHHHhcCCCeEEecHHHHHH
Confidence            4699999999998888887777777776   6   679999999999974         345666789999999999999


Q ss_pred             hhccccCCCCCCcEEEEEEeCC---------eeEEEEecCCcceEE----------------------------------
Q psy9394         118 LSPFLSNNSLTFPFIALLVSGG---------HTQLIKVNSIGNYFL----------------------------------  154 (339)
Q Consensus       118 ~s~~~~s~~~~~~~~~l~~dGg---------~~~~~~~~~~~~~~~----------------------------------  154 (339)
                      +|+++++++ ..|++++++||.         ..+++..+.. +++.                                  
T Consensus       489 as~mae~~~-~~~vlg~a~DGtGyG~dg~iWGGE~l~~~~~-~~~r~~~l~~~~lpGgd~a~~~p~r~a~~~l~~~~~~~  566 (761)
T 3vth_A          489 ASCMAEHNL-DEKVIGIAYDGTGYGTDGNVWGAEILVCDLK-SFERIAHLKYKPLPGNELAIKKIYRTALGFIFDNISFY  566 (761)
T ss_dssp             HHHHHHTTC-CSCEEEEEEEEEEECTTSSEEEEEEEEECSS-CEEEEEEECCEEEESTTHHHHCHHHHHHHHHGGGGGGG
T ss_pred             HHHHHhcCC-CCceEEEEEeCCCcCCCCCeeeeEEEEEeCC-ceEEEeccccCCCCChhHHHHHHHHHHHHHHhhhhhhh
Confidence            999999987 369999999972         1344443321 1110                                  


Q ss_pred             ----------------------eeeccCCcchhhhHHHHhHcCC----CCCcHHH--HHhccccCCCCcccCCCccccCC
Q psy9394         155 ----------------------LGETLDDAAGDTFDKIAKMLDL----GYPGGPE--ISLISEFGDPNIYKFPRPMLYTN  206 (339)
Q Consensus       155 ----------------------~~~~~~~s~G~~~d~va~~LG~----~~~gg~~--le~lA~~g~~~~~~~~~~l~~~~  206 (339)
                                            ++.+.++|+||+||++|++||+    +||||++  +|.+|..++. .+  |+++. .+
T Consensus       567 ~~~~~~~~~~~~~~l~~~~~~~~n~p~tSS~GRLFDavAalLGl~~~~~YEGqaA~~LEalA~~~~~-~~--p~~i~-~~  642 (761)
T 3vth_A          567 KNFVEQVDSRELDIILKQIDRKINTAYVSSMGRFFDAVAALIGVRKEVLFEGQAAMELESLMAESEE-YY--EYEIL-KE  642 (761)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHTSSEEEECCHHHHHHHHHHHTTSCSSCSSTTHHHHHHHHTCCCCCC-CC--CCCCE-ES
T ss_pred             hhhhhhCCHHHHHHHHHHHHcCCCCCCCCcchhhHHHHHHHcCCCCCCccccchHHHHHHHHhcCCC-CC--Cceec-CC
Confidence                                  1235679999999999999999    6899986  5899976543 33  44432 12


Q ss_pred             C-eeeecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHH
Q psy9394         207 N-FNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNIL  285 (339)
Q Consensus       207 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~  285 (339)
                      + .+++++++..++.+.+..      ..+++|||++||+++++.++++++++.+++++++|+|+||||+|+.|+++|.++
T Consensus       643 ~~~~ld~~~l~~~~~~~l~~------g~~~~dIAasFq~ala~~L~~~~~~a~~~~g~~~VvLsGGVa~N~~Lr~~L~~~  716 (761)
T 3vth_A          643 DRYVIDPELILRQIYEDYMK------GFEKSYISAKFHNTVVNFTYDLANLIRKETGINKVVLSGGSFQNRYLLRRLIEK  716 (761)
T ss_dssp             SSEEECHHHHHHHHHHHHHH------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEESGGGGSHHHHHHHHHH
T ss_pred             CcceecHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHHHHHHHHHHHH
Confidence            2 257777774444433332      257899999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         286 KKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       286 l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      +++.|+++++|+..||||||+|+||+.+...+.+.
T Consensus       717 l~~~g~~v~~p~~~p~~DgGialGQA~~a~~~~~~  751 (761)
T 3vth_A          717 LSLSGFEVYSNSKVPCNDGGISLGQAVIANKILEG  751 (761)
T ss_dssp             HHHTTCEEEECSSSCSSGGGHHHHHHHHHHHHHTS
T ss_pred             HHhCCCEEEecCCCCCCchHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999988655544

>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A

Probab=100.00  E-value=3.2e-38  Score=315.98  Aligned_cols=250  Identities=18%  Similarity=0.239  Sum_probs=201.7

Q ss_pred             ccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHH
Q psy9394          37 HKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGH  116 (339)
Q Consensus        37 ~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aH  116 (339)
                      -++|+||+.+..+.++++.....+..+++   +   +++.|++|.||+|++         ..++...++|++.||||+||
T Consensus       326 ~SqhiGdl~~~~~~~~~~~~~~~~~~l~~---~---~p~~i~~D~HP~y~s---------t~~a~~~~~~~~~vQHHhAH  390 (657)
T 3ttc_A          326 LSQHLGDLSDDGIQTQWREALRLMQNIYN---F---TPQYVVHDAHPGYVS---------CQWASEMNLPTQTVLHHHAH  390 (657)
T ss_dssp             ECCCCCCTTSTTHHHHHHHHHHHHHHHTT---C---CCSEEEEESCTTCHH---------HHHHTTSCSCEEEECHHHHH
T ss_pred             EccCccCCCCHHHHHHHHHHHHHHHHHhC---C---CCCEEEEcCCCCchH---------HHHHHHcCCCeEEeeHHHHH
Confidence            35799999999999888887777777776   6   679999999999974         23666678999999999999


Q ss_pred             hhhccccCCCC--CCcEEEEEEeCC---------eeEEEEecCCcceEE-------------------------------
Q psy9394         117 LLSPFLSNNSL--TFPFIALLVSGG---------HTQLIKVNSIGNYFL-------------------------------  154 (339)
Q Consensus       117 a~s~~~~s~~~--~~~~~~l~~dGg---------~~~~~~~~~~~~~~~-------------------------------  154 (339)
                      ++|++.+++..  ..|++++++||-         ..+++..+.. .++.                               
T Consensus       391 ~~a~~ae~~~~~~~~~vlg~~~DG~G~G~Dg~iWGGE~l~~~~~-~~~R~~hl~~~~lpGGd~a~~~p~R~a~~~l~~~~  469 (657)
T 3ttc_A          391 AAACLAEHQWPLDGGDVIALTLDGIGMGENGALWGGECLRVNYR-ECEHLGGLPAVALPGGDLAAKQPWRNLLAQCLRFV  469 (657)
T ss_dssp             HHHHHHHTTCCTTCCCEEEEEEEEEEECGGGCEEEEEEEEECSS-CEEEEEESCCEECTTGGGGGTCTHHHHHHHHHHHC
T ss_pred             HHHHHHhcCCccCCCCEEEEEEeCCccCCCCCeeeeEEEEEECC-ccEEEeecccCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            99999998862  369999999972         1344443310 1100                               


Q ss_pred             ---------------------------eeeccCCcchhhhHHHHhHcCCC-----CCcHHH--HHhccccCCCCcccCCC
Q psy9394         155 ---------------------------LGETLDDAAGDTFDKIAKMLDLG-----YPGGPE--ISLISEFGDPNIYKFPR  200 (339)
Q Consensus       155 ---------------------------~~~~~~~s~G~~~d~va~~LG~~-----~~gg~~--le~lA~~g~~~~~~~~~  200 (339)
                                                 ++.+.++|+||+||++|++||+.     ||||++  +|.+|..+++..+++|+
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~tSS~GRLFDavAalLGl~~~~~~YEGqaA~~LEalA~~~~~~~~~lp~  549 (657)
T 3ttc_A          470 PEWQNYPETASVAAANWSVLARAIERGINAPLASSCGRLFDAVAAALGCAPATLSYEGEAACALEALAASCDGVTHPVTM  549 (657)
T ss_dssp             TTGGGSGGGHHHHHSCTHHHHHHHHTTSSCCEEEEHHHHHHHHHHHHTCSCSSCSSTTHHHHHHHHHHHTCCCCCCCCCC
T ss_pred             cccccchhhhhcCHHHHHHHHHHHHcCCCCcccCccchHHHHHHHHcCCCCccCccCchhHHHHHHHHhhCCCccCCcee
Confidence                                       12356899999999999999995     899986  58999777654455555


Q ss_pred             ccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHH
Q psy9394         201 PMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRK  280 (339)
Q Consensus       201 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~  280 (339)
                      ++.   +.+++|+++   +..+++.      ..++++||++||+++++.++++++++.+++++++|+|+||||+|+.|++
T Consensus       550 ~i~---~~~ld~s~l---~~~ll~~------g~~~~dIAasFh~ala~~L~~~~~ra~~~~g~~~VvLsGGV~~N~~Lre  617 (657)
T 3ttc_A          550 PRV---DNQLDLATF---WQQWLNW------QAPVNQRAWAFHDALAQGFAALMREQATMRGITTLVFSGGVIHNRLLRA  617 (657)
T ss_dssp             CEE---TTEECHHHH---HHHHHTC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESGGGGCHHHHH
T ss_pred             ecc---CCcccHHHH---HHHHHHc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHHHHHHH
Confidence            542   235777666   5555543      3689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHH
Q psy9394         281 KLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRI  316 (339)
Q Consensus       281 ~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~  316 (339)
                      +|.++++  |+++++|+..||||||+|+||+.+...
T Consensus       618 ~L~~~l~--g~~v~~p~~~p~~DnGiaLGQA~~a~~  651 (657)
T 3ttc_A          618 RLAHYLA--DFTLLFPQSLPAGDGGLSLGQGVIAAA  651 (657)
T ss_dssp             HHHHHTT--TSEEECCCSSCSSGGGHHHHHHHHHHH
T ss_pred             HHHHHhC--CCEEEecCCCCCCcHHHHHHHHHHHHH
Confidence            9999885  899999999999999999999998743

>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}

Probab=100.00  E-value=2.3e-37  Score=316.89  Aligned_cols=254  Identities=17%  Similarity=0.259  Sum_probs=195.6

Q ss_pred             cccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHh
Q psy9394          38 KEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHL  117 (339)
Q Consensus        38 ~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa  117 (339)
                      ++|+||+.+..+.++++.....+..+++   ++  ..+.|++|.||+|.++     .+||+++..+++|++.|+||+||+
T Consensus       422 s~hiGdl~~~~~~~~~~~~~~~~~~l~~---~~--p~~~i~~D~HP~y~st-----~~Ak~lA~~~~iPli~VqHH~AHa  491 (772)
T 4g9i_A          422 SQYIGNTGKVEVLEFMREAIAHFRKILR---VK--NLDLIIADLHPAYNTT-----KLAMEMANELDVELLQVQHHYAHI  491 (772)
T ss_dssp             CSCCCCSCSHHHHHHHHHHHHHHHTTSC---SS--CSSCEEEESCTTCHHH-----HHHHHHHTTTTCCCCEECSHHHHT
T ss_pred             ccccccCCCHHHHHHHHHHHHHHHHhhC---CC--CCCEEEEeCCCCcHHH-----HHHHHHHHhcCCCeeeehHHHHHH
Confidence            4799999999888777776656655544   53  2378999999999864     579999999999999999999999


Q ss_pred             hhccccCCCCCCcEEEEEEeCCe---------eEEEEecCCcceEE----------------------------------
Q psy9394         118 LSPFLSNNSLTFPFIALLVSGGH---------TQLIKVNSIGNYFL----------------------------------  154 (339)
Q Consensus       118 ~s~~~~s~~~~~~~~~l~~dGg~---------~~~~~~~~~~~~~~----------------------------------  154 (339)
                      +++++++++  .+++++++||..         .+++..+. .+++.                                  
T Consensus       492 aS~~~esg~--~~~l~LalDGsG~G~dgtiWgGE~L~~d~-~~~eRlg~l~~l~l~ggDaA~~~p~r~a~~ll~~~~G~~  568 (772)
T 4g9i_A          492 ASVMAEKNL--DSVIGIALDGVGYGTDGNTWGGEVLYLGY-EDVERLAHIDYYPLPGGDLASYYPLRALMGILSKVYSID  568 (772)
T ss_dssp             HHHHHHTTC--CCCEEEECCSSEEETTTEEEESEEEECCS-SSCEECCCBCCEEESSHHHHHHSTHHHHHHHHTTTSCHH
T ss_pred             HHHHHhcCC--CCeEEEEEEEeCCCCCCeEeeeEEEEecC-cceEEeeeeeecCcccchhhhhhHHHHHHHHHhhcCCch
Confidence            999999997  478999999832         12222211 11110                                  


Q ss_pred             ----------------------------------eeeccCCcchhhhHHHHhHcCC----CCCcHHHH--HhccccCCCC
Q psy9394         155 ----------------------------------LGETLDDAAGDTFDKIAKMLDL----GYPGGPEI--SLISEFGDPN  194 (339)
Q Consensus       155 ----------------------------------~~~~~~~s~G~~~d~va~~LG~----~~~gg~~l--e~lA~~g~~~  194 (339)
                                                        ++.+.++|+||+||+++.+||+    +|||+++|  |.+|..+.. 
T Consensus       569 ~i~~~~k~~~~a~~~~~~~~~~e~~~l~~~l~~gin~p~tSS~GRlFDavAallGl~~~~sYEGqaAm~LE~la~~~~~-  647 (772)
T 4g9i_A          569 ELEGVINRCCPKAVESLKYGKVEFNVVLNQLAKGINTAYASSTGRVLDAIAVLLNVAYRRHYEGEPAMKLESFAFKGKN-  647 (772)
T ss_dssp             HHHHHHTTSCCGGGTTSSSCSHHHHHTHHHHHTTSSCEEEEEHHHHHHHHHHSSSSCCSCCSSSCHHHHHHHHHHTCCS-
T ss_pred             HHHHHHHhcChhhccCcccchHHHHHHHHHHhcCCCCccccccchhhHHHHHHcCCcccccccchhhHHHHHhhhhccc-
Confidence                                              0113457999999999999999    58898876  677765543 


Q ss_pred             cccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhh
Q psy9394         195 IYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGA  274 (339)
Q Consensus       195 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~  274 (339)
                      ...++.++.   +..+++.++   +..+++..    ...++.|||++||.++++.++++++++.+++|+++||||||||+
T Consensus       648 ~~~~~~~~~---~~~id~~~l---~~~~~~~l----~~~~~~dIAasfQ~al~~~L~~~~~~a~~~tg~~~VvLSGGVa~  717 (772)
T 4g9i_A          648 DLKFEVPVE---GELIRVEEL---FQSILEAI----EGASPADIAYSAHLALARAFAHTAVERAREFGVKNVALSGGVAY  717 (772)
T ss_dssp             CCCCCCCCB---TTBBCHHHH---HHHHHHHH----TTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCEESSTTC
T ss_pred             ccCCCcCcc---ccccchHHH---HHHHHhhh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEEchHHH
Confidence            222333321   223454444   33333322    24678999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHH
Q psy9394         275 NKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMR  315 (339)
Q Consensus       275 N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~  315 (339)
                      |+.|++++.+.+++.|+++|+|+..||||+|+|+|||.+..
T Consensus       718 N~~L~~~l~~~L~~~G~~v~~p~~vP~nDgGiALGQA~iA~  758 (772)
T 4g9i_A          718 NELITKMIRKVVEANGLNFHVTTEVPRGDNGVNVGQAFLGG  758 (772)
T ss_dssp             CHHHHHHHHHHGGGSSCCCCCCTTSCSSGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEccCCCCCCcchHHHHHHHHHH
Confidence            99999999999999999999999989999999999998763

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=99.96  E-value=1.4e-27  Score=218.65  Aligned_cols=270  Identities=16%  Similarity=0.201  Sum_probs=197.4

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |++||||.++..+++|+++++ ++|++....++        |..|+.+.        ..++++++++++...+++.++++
T Consensus         1 M~~lGID~GsT~tk~av~d~~-~~il~~~~~~~--------g~~~e~a~--------~vl~~~~~~a~~~~~~~~~~a~t   63 (276)
T 4ehu_A            1 MYTMGLDIGSTASKGVILKNG-EDIVASETISS--------GTGTTGPS--------RVLEKLYGKTGLAREDIKKVVVT   63 (276)
T ss_dssp             CEEEEEEECSSCEEEEEEETT-TEEEEEEEESC--------CTTSSHHH--------HHHHHHHHHHCCCGGGEEEEEEE
T ss_pred             CeEEEEEcCccEEEEEEEECC-CeEEEEEEecC--------CCCHHHHH--------HHHHHHHHHCCCcchhccccccC
Confidence            999999999889999999998 77887654322        44454322        36788899999999999999999


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceE--Eeeec
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYF--LLGET  158 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~--~~~~~  158 (339)
                      .+|+.                ....|++.|+|..||++++.+..+.   ...++.+.|+++.++.+...+.++  .++..
T Consensus        64 ~~~~~----------------a~~~~~~~Vne~~aha~a~~~~~~~---~~~vl~lgG~~~~~~~~~~~g~~~~~~~~~~  124 (276)
T 4ehu_A           64 GYGRM----------------NYSDADKQISELSCHARGVNFIIPE---TRTIIDIGGQDAKVLKLDNNGRLLNFLMNDK  124 (276)
T ss_dssp             STTGG----------------GCCSCSEECCHHHHHHHHHHHHSTT---CCEEEEECSSCEEEEEECTTSCEEEEEEECS
T ss_pred             chHHH----------------HhhCCCcccchHHHHHHHHHHhCCC---CCeEEEEcCCCceEEEEEecCceEEEEeCCC
Confidence            88763                2457889999999999999887652   345666677788877776666655  45778


Q ss_pred             cCCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHH
Q psy9394         159 LDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANI  238 (339)
Q Consensus       159 ~~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~di  238 (339)
                      ++.+.|+|+|+++++||++|++++.++..|..        +.++.  +.| ++|  .++.+...+.+.      .+++||
T Consensus       125 ~~~g~G~f~d~~a~~l~~~~~~~~~~~~~a~~--------~~~i~--~~~-~~f--~~s~~~~~~~~~------~~~~di  185 (276)
T 4ehu_A          125 CAAGTGRFLDVMAKIIEVDVSELGSISMNSQN--------EVSIS--STC-TVF--AESEVISHLSEN------AKIEDI  185 (276)
T ss_dssp             CSTTSHHHHHHHHHHHTCCGGGHHHHHTTCSS--------CCCCC--CCS-HHH--HHHHHHHHHHTT------CCHHHH
T ss_pred             cCcchhhHHHHHHHHhccChhhhHHHHhcCCC--------CCCcC--Ccc-chh--hhhHHHHhhhcc------ccHHHH
Confidence            89999999999999999999987777544422        22332  122 233  366677766654      678999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHH--HH
Q psy9394         239 ARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM--RI  316 (339)
Q Consensus       239 Aa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~--~~  316 (339)
                      ++++|+++.+.+..++.+   ....++|+|+|||+.|..+++.+.+.+   +.++++|+  .|.++|+ +|+|.+.  .+
T Consensus       186 ~a~~~~~v~~~l~~~~~~---~~~~~~vvl~GGva~n~~lr~~l~~~~---g~~~~~p~--~p~~~~A-~GAAl~A~~~~  256 (276)
T 4ehu_A          186 VAGIHTSVAKRVSSLVKR---IGVQRNVVMVGGVARNSGIVRAMAREI---NTEIIVPD--IPQLTGA-LGAALYAFDEA  256 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HCCCSSEEEESGGGGCHHHHHHHHHHH---TSCEECCS--SGGGHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh---cccCCeEEEecCccchHHHHHHHHHHH---CCCeeeCC--CcchHHH-HHHHHHHHHHH
Confidence            999999999998776544   457899999999999999999998876   77899998  5777664 6766554  34


Q ss_pred             HhcCCCCCCcccccccCC
Q psy9394         317 ENNYKSESNYEFNIKPQW  334 (339)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~  334 (339)
                      +...+...+.++..+|++
T Consensus       257 ~~~~~~~~~~~~~~~~~~  274 (276)
T 4ehu_A          257 KESQKEVKNISAWSHPQF  274 (276)
T ss_dssp             HHHHHTSCCCCC------
T ss_pred             hhccchhhcccccccccc
Confidence            433333323566666654

>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}

Probab=99.90  E-value=5e-24  Score=186.67  Aligned_cols=124  Identities=23%  Similarity=0.437  Sum_probs=106.9

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |+||+||||++++++||++++  +++++....                .++|++.+.++++++|+++|++++|||.|+|+
T Consensus         2 M~iLaIdTS~~~~svAl~~~~--~~~~~~~~~----------------~~~Hs~~L~p~i~~~L~~a~~~~~dld~Iav~   63 (213)
T 3r6m_A            2 AKILAIDTATENCSVALLVND--QVISRSEVA----------------PRDHTKKVLPMVDEVLKEAGLTLQDLDALAFG   63 (213)
T ss_dssp             CCEEEEECSSSEEEEEEESSS--CEEEEEEEC----------------CSCCHHHHHHHHHHHHHTTTCCTTTCSEEEEE
T ss_pred             CEEEEEEccCcceEEEEEECC--EEEEEEEec----------------hHHHHHHHHHHHHHHHHHcCCCHHHccEEEEe
Confidence            899999999999999999988  687754221                25799999999999999999999999999999


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEE
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIK  145 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~  145 (339)
                      .|||+|||+|+|+.+||+|+..+++|+++|+|+++|+..+....+   ...++.++|.+..++|.
T Consensus        64 ~GPGsfTglRig~~~AkgLa~~~~iPl~gVstL~a~a~~~~~~~~---~~~v~~~~DARr~evY~  125 (213)
T 3r6m_A           64 RGPGSFTGVRIGIGIAQGLAFGAELPMIGVSTLAAMAQASYRLHG---ATDVAVAIDARMSEVYW  125 (213)
T ss_dssp             EESSCHHHHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHC---CSEEEEEECCSTTCEEE
T ss_pred             cCCCchhhHHHHHHHHHHHHHHhCCCEEEEcCHHHHHHhhhhcCC---CcEEEEEEECCCCCeee
Confidence            999999999999999999999999999999999999998765432   13466778987655553

>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A

Probab=99.89  E-value=5.5e-23  Score=183.19  Aligned_cols=123  Identities=25%  Similarity=0.444  Sum_probs=105.9

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      +||+||||++++++||++++  +++++.+..                .++|++.+.++|+++|+++|++++|||.|+|+.
T Consensus         2 ~iL~idTs~~~~sval~~~~--~~~~~~~~~----------------~~~h~~~l~~~i~~~L~~a~~~~~did~Iav~~   63 (231)
T 2gel_A            2 RILAIDTATEACSVALWNNG--TINAHFELC----------------PREHTQRILPMVQEILAASGASLNEIDALAFGR   63 (231)
T ss_dssp             EEEEEECSSSEEEEEEEETT--EEEEEEEEC----------------CSCCHHHHHHHHHHHHHHTTCCGGGCSEEEEEC
T ss_pred             eEEEEECCCcCeEEEEEECC--EEEEEEhhh----------------hHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence            68999999999999999988  677644322                257899999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEE
Q psy9394          82 GPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIK  145 (339)
Q Consensus        82 gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~  145 (339)
                      |||+|||+|+|+.++|+|+..+++|+++|+||.+|+++++..++   ...+++++|++..++|.
T Consensus        64 GPGsftglRig~~~ak~la~~~~~Pl~~V~~l~a~a~~~~~~~~---~~~v~~~~DArrgevY~  124 (231)
T 2gel_A           64 GPGSFTGVRIGIGIAQGLALGANLPMIGVSTLATMAQGAWRKTG---ATRVLAAIDARMGEVYW  124 (231)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHTTTCCEEEECHHHHHHHHHHHHHC---CSEEEEEEEETTTEEEE
T ss_pred             CCChhHhHHHHHHHHHHHHHHcCCCEEEeccHHHHHHHHhhccC---CceEEEEEECCCCcEEE
Confidence            99999999999999999999999999999999999998876543   23466677887555554

>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9

Probab=99.87  E-value=6.6e-22  Score=174.17  Aligned_cols=120  Identities=17%  Similarity=0.201  Sum_probs=102.8

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      +||+||||+.++++||++++  +++ +.. ..              ..++|++.+.++++++|+++|++++|||.|+|+.
T Consensus        13 ~iLaidTS~~~~sval~~~~--~~l-~~~-~~--------------~~r~Hse~L~p~i~~~L~~a~~~~~dld~Iav~~   74 (218)
T 2a6a_A           13 MNVLALDTSQRIRIGLRKGE--DLF-EIS-YT--------------GEKKHAEILPVVVKKLLDELDLKVKDLDVVGVGI   74 (218)
T ss_dssp             CEEEEEECSSSEEEEEEETT--EEE-EEE-EE--------------SCGGGGGHHHHHHHHHHHHHTCCGGGCSEEEEEC
T ss_pred             eEEEEEcCCcCeEEEEEECC--EEE-EEE-ec--------------chHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence            58999999999999999988  677 322 11              1368999999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEE
Q psy9394          82 GPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIK  145 (339)
Q Consensus        82 gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~  145 (339)
                      |||+|||+|||+.+||+|+..+++|+++|+|+++|++....  .    ..++.++|.+..++|.
T Consensus        75 GPGsfTGlRiG~~~Ak~La~~~~iPl~gVs~l~a~a~~~~~--~----~~v~~~iDARr~eVY~  132 (218)
T 2a6a_A           75 GPGGLTGLRVGIATVVGLVSPYDIPVAPLNSFEMTAKSCPA--D----GVVLVARRARKGYHYC  132 (218)
T ss_dssp             CSSCHHHHHHHHHHHHHHHGGGTCCEEEECHHHHHHHTCSS--C----EEEEEEEECSTTEEEE
T ss_pred             CCCchHhHHHHHHHHHHHHHHcCCCEEEeCcHHHHHhhccc--C----CcEEEEEECCCCcEEE
Confidence            99999999999999999999999999999999999987642  1    2356677987665554

>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5

Probab=99.81  E-value=2.5e-18  Score=156.76  Aligned_cols=249  Identities=14%  Similarity=0.199  Sum_probs=172.1

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |++||||.++..++++|++++ +++++....       +..|+ |.       +.+...++++.+ .+++..++..|+++
T Consensus         3 ~~~lGiD~Gst~~k~~l~d~~-g~i~~~~~~-------~~~~~-~~-------~~~~~~l~~l~~-~~~~~~~i~~i~~T   65 (270)
T 1hux_A            3 IYTLGIDVGSTASKCIILKDG-KEIVAKSLV-------AVGTG-TS-------GPARSISEVLEN-AHMKKEDMAFTLAT   65 (270)
T ss_dssp             CEEEEEEECSSEEEEEEEETT-TEEEEEEEE-------ECCSS-CC-------HHHHHHHHHHHH-HTCCGGGCSEEEEE
T ss_pred             cEEEEEEeccceEEEEEEeCC-CCEEEEEEe-------cCCCC-HH-------HHHHHHHHHHHH-cCCChhHEEEEEEe
Confidence            689999999999999999986 578875422       12232 22       223345555544 35666788888876


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceE--Eeeec
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYF--LLGET  158 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~--~~~~~  158 (339)
                       |.|...           +.. ...|  .++|..||+.++.+..+.  .. .++.+.|++++++.+++ +.+.  .++..
T Consensus        66 -G~g~~~-----------~~~-~~~~--~v~Ei~ah~~ga~~~~~~--~~-~vidiGGqd~k~i~~~~-g~v~~~~mn~~  126 (270)
T 1hux_A           66 -GYGRNS-----------LEG-IADK--QMSELSCHAMGASFIWPN--VH-TVIDIGGQDVKVIHVEN-GTMTNFQMNDK  126 (270)
T ss_dssp             -STTTTT-----------TTT-TCSE--EECHHHHHHHHHHHHCTT--CC-EEEEEETTEEEEEEEET-TEEEEEEEESS
T ss_pred             -Cccccc-----------hhh-cCCC--CcccHHHHHHHHHHhCCC--CC-EEEEECCCceEEEEEeC-Cceeeeccccc
Confidence             444210           111 2333  589999999887776552  23 45666788999999954 5432  35667


Q ss_pred             cCCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCe-eeecchHHHHHHHHHHhhccccccccHHH
Q psy9394         159 LDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNF-NFSFSGLKTSVLNVIKNIKLDSLKKEKAN  237 (339)
Q Consensus       159 ~~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~d  237 (339)
                      |+.+.|+|+|.++..||++++   .++.+|..++     .|+++.  ..| +|    .++++..++.+.      .+++|
T Consensus       127 ca~GtG~~le~~a~~lg~~~~---el~~la~~~~-----~p~~~~--~~c~vf----a~s~v~~l~~~g------~~~~d  186 (270)
T 1hux_A          127 CAAGTGRFLDVMANILEVKVS---DLAELGAKST-----KRVAIS--STCTVF----AESEVISQLSKG------TDKID  186 (270)
T ss_dssp             CCTTSHHHHHHHHHHHTCCTT---THHHHHTTCC-----SCCCCC--CCSHHH----HHHHHHHHHHTT------CCHHH
T ss_pred             cchhhHHHHHHHHHHhCCCHH---HHHHHHhhCC-----CCCCcc--cccchh----HhHHHHHHhhCC------CCHHH
Confidence            888899999999999999886   5666775543     234432  234 33    377777777654      67899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHH
Q psy9394         238 IARGFLDAIIDVLTFKCIAALKNTG-INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMR  315 (339)
Q Consensus       238 iAa~~q~~l~~~l~~~~~~~~~~~~-~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~  315 (339)
                      |++++++.++..+.++++    ..+ .++|+++||++.|..+++.+.+.+   +.++++|+.   .....++|+|.+..
T Consensus       187 i~~av~e~Va~~i~~~~~----~~~~~~~i~~~GG~a~n~~~~~~~~~~l---g~~v~~p~~---~~~~~AlGAAl~A~  255 (270)
T 1hux_A          187 IIAGIHRSVASRVIGLAN----RVGIVKDVVMTGGVAQNYGVRGALEEGL---GVEIKTSPL---AQYNGALGAALYAY  255 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHH----TTCCCSSEEEESGGGGCHHHHHHHHHHH---CSCEECCGG---GGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh----cCCCCCeEEEeCccccCHHHHHHHHHHH---CCCeEeCCC---cchHhHHHHHHHHH
Confidence            999999999999866654    335 378999999999999999999887   677888752   23345677777664

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14

Probab=99.77  E-value=1.5e-17  Score=151.98  Aligned_cols=240  Identities=15%  Similarity=0.153  Sum_probs=166.6

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |+.+|||.++..+++++++++  ++++.. +.+                 +.   +...++.+ +     .++++.|++|
T Consensus        20 ~~~iGIDiGsTt~K~V~~~~~--~i~~~~-~~~-----------------~~---~~~~l~~l-~-----~~~~~~i~~T   70 (287)
T 2ews_A           20 HMKVGIDAGGTLIKIVQEQDN--QRTFKT-ELT-----------------KN---IDQVVEWL-N-----QQQIEKLCLT   70 (287)
T ss_dssp             -CEEEEEECSSEEEEEEECSS--CEEEEE-EEG-----------------GG---HHHHHHHH-H-----TSCCSEEEEE
T ss_pred             CeEEEEEEChhhEEEEEEcCC--EEEEEE-ech-----------------HH---HHHHHHHh-c-----ccCceEEEEE
Confidence            467999999999999999877  687652 221                 11   11222222 2     3478888877


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCC---CCCcEEEEEEeCCeeEEEEecCCcceEEeee
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNS---LTFPFIALLVSGGHTQLIKVNSIGNYFLLGE  157 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~---~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~  157 (339)
                       |.|           +..++...+.|+..++++.||+.++.+..+.   .-+|.+++-+.|+++ ++.+++ ++++.++.
T Consensus        71 -G~G-----------~~~~~~~l~~~~~~v~Ei~~~~~Ga~~l~~~~~~~~~~~~vIdIGg~ds-ii~v~~-~~f~r~~g  136 (287)
T 2ews_A           71 -GGN-----------AGVIAENINIPAQIFVEFDAASQGLGILLKEQGHDLADYIFANVGTGTS-LHYFDG-QSQRRVGG  136 (287)
T ss_dssp             -STT-----------HHHHHTTSSSCCEECCHHHHHHHHHHHHHHHTTCCCSCEEEEEESSSEE-EEEECS-SCEEEEEE
T ss_pred             -Chh-----------HHhHhHhhCCCcceeehhHHHHHHHHHhcccCCCCcCCeEEEEeCCCeE-EEEEcC-CceEEcCc
Confidence             555           2344455678999999999999998875431   013776666667777 888874 57887766


Q ss_pred             ccCCcchhhhHHHHhHcCC-CCCcHHHHHhccccCCCCccc------CC---CccccCCCeeeecchHHHHHHHHHHhhc
Q psy9394         158 TLDDAAGDTFDKIAKMLDL-GYPGGPEISLISEFGDPNIYK------FP---RPMLYTNNFNFSFSGLKTSVLNVIKNIK  227 (339)
Q Consensus       158 ~~~~s~G~~~d~va~~LG~-~~~gg~~le~lA~~g~~~~~~------~~---~~l~~~~~~~~~~~~l~~~~~~~~~~~~  227 (339)
                      .+ .+.|+|+|.++.+|+. +++   +|..||..++....+      ++   .++.....|. .|...    ..+++   
T Consensus       137 ~a-aGgGtFl~l~a~ll~~~~~~---el~~lA~~g~~~~vDl~v~DIy~~~~~~l~~~s~as-~Fgk~----~~l~~---  204 (287)
T 2ews_A          137 IG-TGGGMIQGLGYLLSQITDYK---QLTDMAQHGDRNTIDLKVRHIYKDTEPPIPGDLTAA-NFGHV----LHHLD---  204 (287)
T ss_dssp             ES-CSHHHHHHHHHHHHCCCCHH---HHHHHHTTCCCTTTCEETTTC-------CCTTSEEE-TTTTG----GGCTT---
T ss_pred             cc-cchhhHHHHHHHHhCCCCHH---HHHHHHHcCCccccccchhhhcCCCCCCcCcchhhH-HHHHH----HHHHh---
Confidence            55 4569999999999995 766   566678777642111      01   0111111231 23221    12222   


Q ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc-hhhhHHHHHHHHHHHHhCCcEEEccCC
Q psy9394         228 LDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGG-VGANKQLRKKLNILKKQYNYTVFYPKK  298 (339)
Q Consensus       228 ~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGG-Va~N~~l~~~l~~~l~~~~~~v~~~~~  298 (339)
                         ...+++|||+++++++.+.+..++....++.++++|+|+|| ++.|..+++.+.+.+...+.++++|+.
T Consensus       205 ---~g~~~eDIaasl~~sV~~~I~~la~~~a~~~~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~  273 (287)
T 2ews_A          205 ---ADFTPSNKLAAVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVEN  273 (287)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTT
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCC
Confidence               24789999999999999999999998888899999999999 999999999999887666789998873

>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*

Probab=99.30  E-value=4.5e-11  Score=111.87  Aligned_cols=227  Identities=14%  Similarity=0.150  Sum_probs=132.7

Q ss_pred             HHHHHHHHhCCCCCCCcCEEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCC------------
Q psy9394          58 PLLSKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNN------------  125 (339)
Q Consensus        58 ~~i~~~l~~~~i~~~did~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~------------  125 (339)
                      ..++++ ++.++. .+.+.|++| |-|.+-       +...+....++++..++++.||+..+.+..+            
T Consensus        86 ~~l~~~-~~~~~~-~~~~~i~aT-GgGa~k-------~~~~~~~~~g~~~~k~dE~~c~~~G~~~l~~~~~~~~~e~~t~  155 (360)
T 2i7n_A           86 RFIQMG-SEKNFS-SLHTTLCAT-GGGAFK-------FEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYF  155 (360)
T ss_dssp             HHHHHC--------------CEE-STTTTG-------GGTTC-------CCBCCHHHHHHHHHHHHHHHCBTTBCSEEEE
T ss_pred             HHHHHH-HHcCCC-ccCcEEEEE-CCcHHH-------HHHHHHHHhCCCcceecHHHHHHHHHHHHhcccccCCceeEEe
Confidence            344433 333443 344666666 556541       1122223456677788999999988665331            


Q ss_pred             ---------------C-CCCcEEEEEEeCCeeEEEEecCCcceEEeeeccCCcchhhhHHHHhHcC-CCCCcHHHHHhcc
Q psy9394         126 ---------------S-LTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLD-LGYPGGPEISLIS  188 (339)
Q Consensus       126 ---------------~-~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~G~~~d~va~~LG-~~~~gg~~le~lA  188 (339)
                                     + ..+|++++-+.+| ++++.+++.++++.++. +....|.|++-++.++| .+++   +|..||
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~PyllVnIGsG-vSiikv~~~~~f~rvgG-~siGGGTflGL~~lLtg~~~~d---El~~lA  230 (360)
T 2i7n_A          156 ENPTNPELCQKKPYCLDNPYPMLLVNMGSG-VSILAVYSKDNYKRVTG-TSLGGGTFLGLCCLLTGCETFE---EALEMA  230 (360)
T ss_dssp             ESTTCTTTCEEEEECCSSCCSEEEEEESSS-EEEEEEEETTEEEEEEE-ESCSHHHHHHHHHHHHCCCSHH---HHHHHH
T ss_pred             ccccccccccccccccccCCceEEEEeCCC-cEEEEEcCCCCEEEecc-ccCccHhHHHHHHHHhCCCCHH---HHHHHH
Confidence                           0 0146666555555 58888887678887754 45788999999886666 4565   566788


Q ss_pred             ccCCCCccc----------CC-CccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy9394         189 EFGDPNIYK----------FP-RPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAA  257 (339)
Q Consensus       189 ~~g~~~~~~----------~~-~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~  257 (339)
                      ..|+....+          ++ ..+.....+ -+|..+    ....++     ...+++|||++++.++++.+..++.-.
T Consensus       231 ~~Gd~~~vDllV~DIYg~~y~~~gL~~~~~A-SsFGk~----~~~~~~-----~~~~~eDIa~gll~sVa~~I~~lA~l~  300 (360)
T 2i7n_A          231 AKGDSTNVDKLVKDIYGGDYERFGLQGSAVA-SSFGNM----MSKEKR-----DSISKEDLARATLVTITNNIGSIARMC  300 (360)
T ss_dssp             HHCCGGGTSEEHHHHHSSCBGGGTBCTTSEE-ETTTTT----TSHHHH-----TTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCCCcccceeeecccCcccccCCCcccee-ehhhhH----hhHhhh-----cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777752110          11 011111112 133333    111111     236899999999999999999998877


Q ss_pred             HHHhCCCeEEEEcc-hhhhHHHHHHHHHHHH---hCCcEEEccCC-CCCChhHHHHHHHHH
Q psy9394         258 LKNTGINKLVVVGG-VGANKQLRKKLNILKK---QYNYTVFYPKK-EFCTDNGAMIAFAGA  313 (339)
Q Consensus       258 ~~~~~~~~v~laGG-Va~N~~l~~~l~~~l~---~~~~~v~~~~~-~~~~D~G~aiG~a~~  313 (339)
                      .+++++++|+|+|| ++.|..+.+.|.+.+.   ..+.++++|+. .++    -|+|++..
T Consensus       301 A~~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~----GAlGAaL~  357 (360)
T 2i7n_A          301 ALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYF----GAVGALLE  357 (360)
T ss_dssp             HHHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCH----HHHHHHHH
T ss_pred             HHHcCCCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHH----HHHHHHHH
Confidence            88889999999999 9999999999998873   12457777763 232    24555544

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=98.36  E-value=0.00017  Score=64.61  Aligned_cols=240  Identities=13%  Similarity=0.068  Sum_probs=126.4

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHH-HHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQT-IIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~-l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      +++|||.+++.+.+++++++ ++++.........+.   .|...+   ...... +..+++.+....+.   ++..++++
T Consensus        29 ~~~gIDiGS~s~k~vi~~~~-~~~l~~~~~~~~~l~---~g~i~d---~~~~~~~l~~~~~~~~~~~~~---~~~~~v~t   98 (272)
T 3h1q_A           29 YKVGVDLGTADIVLVVTDQE-GIPVAGALKWASVVK---DGLVVD---YIGAIQIVRELKAKVERLLGS---ELFQAATA   98 (272)
T ss_dssp             CEEEEECCSSEEEEEEECTT-CCEEEEEEEECCCCB---TTBCTT---HHHHHHHHHHHHHHHHHHSSS---CCCEEEEE
T ss_pred             EEEEEEcccceEEEEEECCC-CcEEEEEeecccccC---CCEEEc---HHHHHHHHHHHHHHHHHhcCC---ccCeEEEE
Confidence            57899999999999988765 567664322111111   122211   122222 23344555555555   44444444


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEE-eecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeecc
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVI-GINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETL  159 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~-~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~  159 (339)
                       -|..++.-+  ..+.+......+.++. -+..-.|++.+...      ...+++.+.|+.+++..+.+ +.+. ....+
T Consensus        99 -vp~~~~~~~--~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~------~~~~viDiGggst~~~~~~~-g~~~-~~~~~  167 (272)
T 3h1q_A           99 -IPPGTVGRN--AEACGHVVAGAGLELVTLVDEPVAAARALGI------NDGIVVDIGGGTTGIAVIEK-GKIT-ATFDE  167 (272)
T ss_dssp             -CCSCC---C--TTHHHHHHHHTTCEEEEEECHHHHHHHHHTC------SSEEEEEECSSCEEEEEEET-TEEE-EECCB
T ss_pred             -cCCCCCHHH--HHHHHHHHHHcCCeeeecccHHHHHHHHHcC------CCEEEEEECCCcEEEEEEEC-CEEE-EEecC
Confidence             454443211  1123444556677754 34555565554322      13355555577787777654 3333 33444


Q ss_pred             CCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHH
Q psy9394         160 DDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIA  239 (339)
Q Consensus       160 ~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diA  239 (339)
                      +.+..++-+.++..++.+++   ..+.+-..                   ++.   .                ....++.
T Consensus       168 ~~Gg~~~~~~l~~~l~~~~~---~ae~~k~~-------------------~~~---~----------------~~~~~~~  206 (272)
T 3h1q_A          168 PTGGTHLSLVLAGSYKIPFE---EAETIKKD-------------------FSR---H----------------REIMRVV  206 (272)
T ss_dssp             SCCHHHHHHHHHHHHTCCHH---HHHHHHHS-------------------STT---H----------------HHHHHHH
T ss_pred             CCcHHHHHHHHHHHhCCCHH---HHHHHHHh-------------------cCC---H----------------HHHHHHH
Confidence            55556666667776654422   11111000                   000   0                1122222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHH
Q psy9394         240 RGFLDAIIDVLTFKCIAALKNTG-INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGA  313 (339)
Q Consensus       240 a~~q~~l~~~l~~~~~~~~~~~~-~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~  313 (339)
                      ..+.    +.+.+.+.+..++.+ +++|+|+||.+.+..+.+.+.+.+   +.++..|+   ..+-..++|++.+
T Consensus       207 ~~~~----~~i~~~i~~~l~~~~~~~~ivL~GG~a~~~~l~~~l~~~l---~~~v~~~~---~p~~a~a~Gaal~  271 (272)
T 3h1q_A          207 RPVI----EKMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRFL---GKEVQVPI---HPLLVTPLGIALF  271 (272)
T ss_dssp             HHHH----HHHHHHHHHHTTTSCSSCCEEEESGGGGSTTHHHHHHHHH---SSCCBCCS---SGGGHHHHHHHTT
T ss_pred             HHHH----HHHHHHHHHHHHhcCCCCEEEEECCccchhhHHHHHHHHh---CCCccccC---ChHHHHHHHHHhc
Confidence            2222    233444455555666 789999999999999999999887   56666654   3456777887753

>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*

Probab=97.94  E-value=0.0019  Score=60.37  Aligned_cols=237  Identities=15%  Similarity=0.156  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHhCCCCCCCcCEEEEeC----C-CCC-CchhHHHHH--H-------------HHHHHH-hcCCCEEeecch
Q psy9394          56 IIPLLSKLLKNSNLELKKIDIIAYTR----G-PGL-PGSLLVGSS--I-------------ACSIAL-SINKPVIGINHL  113 (339)
Q Consensus        56 l~~~i~~~l~~~~i~~~did~ia~~~----g-PG~-~t~lr~g~~--~-------------ak~la~-~~~~p~~~v~h~  113 (339)
                      .-+++..++++.++++++||.|++-.    | |.. +| +.+|-.  .             .+.++. ..+.|++++-|.
T Consensus        70 ~a~av~~~l~~~~~~~~~Id~IGsHGQTv~H~P~~~~T-lQiGd~~~iA~~Tgi~vV~DFR~~DvAaGGQGAPLvP~~h~  148 (371)
T 3qbx_A           70 AAQGVRELLLQQQMSPDEVRAIGSHGQTIRHEPARHFT-VQIGNPALLAELTGIDVVADFRRRDVAAGGQGAPLVPAFHQ  148 (371)
T ss_dssp             HHHHHHHHHHHTTCCGGGCCEEEECCEEEEEEGGGTEE-EEECCHHHHHHHHSSCEEECCSHHHHHTTSCCCCCCHHHHH
T ss_pred             HHHHHHHHHHHcCCCcccccEEEeCCccCccCCCCCCe-eecCCHHHHHHHHCcCEEeeChHHHHhccCCCCCcchHHHH
Confidence            33678899999999999999998732    1 421 11 122211  0             112221 236677665553


Q ss_pred             hHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEEeeeccCCcch-hhhHHHHh-HcCCCCCcHHHHHhccccC
Q psy9394         114 EGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAG-DTFDKIAK-MLDLGYPGGPEISLISEFG  191 (339)
Q Consensus       114 ~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~G-~~~d~va~-~LG~~~~gg~~le~lA~~g  191 (339)
                      ...      .++  .++ .+++=-||.+-+-.+...+.+.-    +|+.-| .+.|...+ ..|.+|+...+   +|+.|
T Consensus       149 ~lf------~~~--~~~-r~~lNIGGIaNiT~l~~~~~v~a----fDtGPgN~liD~~~~~~~~~~yD~dG~---~A~~G  212 (371)
T 3qbx_A          149 ALF------GDD--DTS-RAVLNIGGFSNVSLLSPGKPVRG----FDCGPGNVLMDAWIHHQRGEHFDRDGA---WAASG  212 (371)
T ss_dssp             HHH------C------C-EEEEEESSEEEEEEECTTSCCEE----EEEEESSHHHHHHHHHHHCCSSCGGGH---HHHTS
T ss_pred             HHh------CCC--CCc-eEEEecCCceEEEEeCCCCCEEE----EecCccHHHHHHHHHHHhCCCcccCcc---hhcCC
Confidence            221      111  134 33333455555555544333322    233333 36776665 66777763223   45555


Q ss_pred             CCC-----------cccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9394         192 DPN-----------IYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKN  260 (339)
Q Consensus       192 ~~~-----------~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~  260 (339)
                      +..           ++..|.| ++.+.-.|...    .+...+++.    ...+++|+.+.+-+..+..|++.++++.. 
T Consensus       213 ~v~~~lL~~ll~~pyf~~~pP-KStGRE~F~~~----~l~~~l~~~----~~ls~~Dv~ATLt~~TA~sIa~~~~~~~~-  282 (371)
T 3qbx_A          213 QVNHALLASLLADEFFAARGP-KSTGRERFNLP----WLQEHLARH----PALPAADIQATLLELSARSISESLLDAQP-  282 (371)
T ss_dssp             CCCHHHHHHHHTSHHHHCCSS-CCCCTTTSSHH----HHHHHC---------CCHHHHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred             CcCHHHHHHHhcCchhcCCCC-CccCHHHhCHH----HHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHHHhccC-
Confidence            431           1222322 11111134311    123333221    13578999999988888888887766542 


Q ss_pred             hCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC-CCCCh--hHHHHHHHHHHHHHhcCCCC
Q psy9394         261 TGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK-EFCTD--NGAMIAFAGAMRIENNYKSE  323 (339)
Q Consensus       261 ~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~-~~~~D--~G~aiG~a~~~~~~~~~~~~  323 (339)
                       ..+.|+++||-+.|..|.++|.+++.  +..|..... -...|  .++++|+.+++.+ .|.+.+
T Consensus       283 -~~~~v~vcGGGa~N~~Lm~~L~~~l~--~~~v~~~d~~Gi~~d~~EA~aFA~LA~~~l-~g~p~~  344 (371)
T 3qbx_A          283 -DCEEVLVCGGGAFNTALMKRLAMLMP--EARVASTDEYGIPPAWMEGMAFAWLAHRFL-ERLPGN  344 (371)
T ss_dssp             -TCCEEEEESGGGGCHHHHHHHHHHCT--TSEEEEGGGGTCCTTTHHHHHHHHHHHHHH-TTCCCS
T ss_pred             -CCceEEEECCccCcHHHHHHHHHhCC--CCEEeCHHHcCCChhHHHHHHHHHHHHHHH-cCCCCC
Confidence             35789999999999999999998763  456665553 23455  7888888888764 444554

>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}

Probab=97.89  E-value=0.00094  Score=61.33  Aligned_cols=126  Identities=14%  Similarity=0.123  Sum_probs=78.2

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      ++||||.+.+.+.+++++.+ ++++...+....    .+.      ......+.+...++.++++.+++..++..|+++.
T Consensus         7 ~~lgiDiggt~~~~~l~d~~-g~il~~~~~~~~----~~~------~~~~~~~~l~~~i~~~~~~~~~~~~~i~~igi~~   75 (326)
T 2qm1_A            7 KIIGIDLGGTTIKFAILTTD-GVVQQKWSIETN----ILE------DGKHIVPSIIESIRHRIDLYNMKKEDFVGIGMGT   75 (326)
T ss_dssp             EEEEEEECSSEEEEEEEETT-CCEEEEEEEECC----CTT------TTTTHHHHHHHHHHHHHHHTTCCGGGEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEECCC-CCEEEEEEEcCC----CCC------CHHHHHHHHHHHHHHHHHHcCCCccceeEEEEec
Confidence            68999999999999999976 678876543221    000      0123456677788999998888777888887763


Q ss_pred             CCCCC---chh-H-------HHH-HHHHHHHHhcCCCEEeecchhHHhhhccccC-CCCCCcEEEEEEeCC
Q psy9394          82 GPGLP---GSL-L-------VGS-SIACSIALSINKPVIGINHLEGHLLSPFLSN-NSLTFPFIALLVSGG  139 (339)
Q Consensus        82 gPG~~---t~l-r-------~g~-~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s-~~~~~~~~~l~~dGg  139 (339)
                       ||..   ++. +       .+. .+.+.+...+++|++-.+.-.+.+++-+... ......++.+.+.-|
T Consensus        76 -pG~vd~~~g~v~~~~~l~w~~~~~l~~~l~~~~~~pv~v~ND~~aaa~~e~~~g~~~~~~~~~~l~~GtG  145 (326)
T 2qm1_A           76 -PGSVDIEKGTVVGAYNLNWTTVQPVKEQIESALGIPFALDNDANVAALGERWKGAGENNPDVIFITLGTG  145 (326)
T ss_dssp             -SSEEETTTTEEECBGGGTBCSCBCHHHHHHHHHCSCEEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS
T ss_pred             -ccceeCCCCEEEecCCCCccCCchHHHHHHHHhCCCEEEecHHHHHHHHHHHhCCCCCCCcEEEEEECCc
Confidence             5542   110 0       112 3456667777899887777777666543221 111235566665533

>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10

Probab=97.86  E-value=0.0065  Score=54.79  Aligned_cols=114  Identities=19%  Similarity=0.192  Sum_probs=69.1

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |+++|||.+.+.+.+++++.+ ++++.+.+...           +     ...+.+...+..++++     .++..|+++
T Consensus         4 m~~lgidiggt~i~~~l~d~~-g~il~~~~~~~-----------~-----~~~~~~~~~i~~~i~~-----~~i~gigi~   61 (292)
T 2gup_A            4 MTIATIDIGGTGIKFASLTPD-GKILDKTSIST-----------P-----ENLEDLLAWLDQRLSE-----QDYSGIAMS   61 (292)
T ss_dssp             CCEEEEEEETTEEEEEEECTT-CCEEEEEEECC-----------C-----SSHHHHHHHHHHHHTT-----SCCSEEEEE
T ss_pred             cEEEEEEECCCEEEEEEECCC-CCEEEEEEEeC-----------C-----CCHHHHHHHHHHHHHh-----CCCcEEEEE
Confidence            789999999999999999876 67876543321           0     0123345566666664     477888775


Q ss_pred             CCCCCC---ch-------h--HHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCC
Q psy9394          81 RGPGLP---GS-------L--LVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGG  139 (339)
Q Consensus        81 ~gPG~~---t~-------l--r~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg  139 (339)
                      . ||..   ++       +  .-+..+.+.+ ...++|++-.+...+.+++-+. .......++.+.++-|
T Consensus        62 ~-pG~vd~~~g~v~~~~~~~~~~~~~l~~~l-~~~~~pv~v~NDa~aaa~~e~~-~~~~~~~~v~l~~GtG  129 (292)
T 2gup_A           62 V-PGAVNQETGVIDGFSAVPYIHGFSWYEAL-SSYQLPVHLENDANCVGLSELL-AHPELENAACVVIGTG  129 (292)
T ss_dssp             E-SSEECTTTCBEESCCSSGGGSSSBHHHHT-GGGCCCEEEEEHHHHHHHHHHH-HCTTCSSEEEEEESSS
T ss_pred             e-cCcccCCCCEEEecCCCCcccCCCHHHHH-HHcCCCEEEechHHHHHHHHHH-hcCCCCeEEEEEECCc
Confidence            3 4432   11       1  1123345667 7789998877777776666443 1111235666666533

>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10

Probab=97.68  E-value=0.009  Score=53.74  Aligned_cols=120  Identities=18%  Similarity=0.196  Sum_probs=65.9

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |+++|||.+.+.+.+++++.+ ++++.+.+....    ..          ...+.+...+...+++.-   .+++.|+++
T Consensus         1 m~~lgidiggt~~~~~l~d~~-g~il~~~~~~~~----~~----------~~~~~~~~~i~~~i~~~~---~~~~~igi~   62 (289)
T 2aa4_A            1 MTTLAIDIGGTKLAAALIGAD-GQIRDRRELPTP----AS----------QTPEALRDALSALVSPLQ---AHAQRVAIA   62 (289)
T ss_dssp             CCEEEEEECSSEEEEEEECTT-CCEEEEEEEECC----SS----------CCHHHHHHHHHHHHTTTG---GGCSEEEEE
T ss_pred             CeEEEEEeCCCEEEEEEECCC-CCEEEEEEecCC----CC----------CCHHHHHHHHHHHHHHHH---hhCCEEEEE
Confidence            889999999999999999865 578876543210    00          001223334444444321   134566665


Q ss_pred             CCCCCCc---h-------h--HHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCC
Q psy9394          81 RGPGLPG---S-------L--LVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGG  139 (339)
Q Consensus        81 ~gPG~~t---~-------l--r~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg  139 (339)
                      . ||...   +       +  ..+..+.+.+...+++|++-.+...+.+++-+......+..++.+.+.-|
T Consensus        63 ~-pG~vd~~~g~v~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~aaa~~e~~~g~~~~~~~v~l~~GtG  132 (289)
T 2aa4_A           63 S-TGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLTNLPTIAINDAQAAAWAEFQALDGDITDMVFITVSTG  132 (289)
T ss_dssp             E-SSEEETTEEECSSGGGGGGGTTCCHHHHHHHHHCSCEEEEEHHHHHHHHHHHTSCTTCCCEEEEEESSS
T ss_pred             e-ccceeCCCCEEEeCCCCCcccCCChHHHHHHHHCCCEEEechHHHHHHHHHHhCCCCCceEEEEEeCcc
Confidence            3 44321   1       1  11223456677778899887777777766643322111115555555433

>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}

Probab=97.55  E-value=0.0074  Score=56.35  Aligned_cols=235  Identities=16%  Similarity=0.180  Sum_probs=132.1

Q ss_pred             HHHHHHHHHhCCCCCCCcCEEEEeC----C-C-C--CCchhHHHHH--H-------------HHHHHH-hcCCCEEeecc
Q psy9394          57 IPLLSKLLKNSNLELKKIDIIAYTR----G-P-G--LPGSLLVGSS--I-------------ACSIAL-SINKPVIGINH  112 (339)
Q Consensus        57 ~~~i~~~l~~~~i~~~did~ia~~~----g-P-G--~~t~lr~g~~--~-------------ak~la~-~~~~p~~~v~h  112 (339)
                      -+++..+++++++++++||.|++-.    | | +  .+| +-+|-.  .             .+.++. ..+.|++++-|
T Consensus        75 a~av~~~l~~~~~~~~~i~~IGsHGQTv~H~P~~~~~~T-lQiGd~~~iA~~tgi~vV~DFR~~DvAaGGQGAPLvP~fh  153 (370)
T 3cqy_A           75 ALAVNNLLAKTKIAKDEIIAIGSHGQTVRHMPNLEVGFT-LQIGDPNTIATETGIDVIADFRRKDIALGGQGAPLVPAFH  153 (370)
T ss_dssp             HHHHHHHHHHHCCCGGGEEEEEEEEEEEEEETTSSSCEE-EEESCHHHHHHHHSSCEEECCHHHHHHTTSCCCCCHHHHH
T ss_pred             HHHHHHHHHHcCCCcccccEEEeCCcccccCCCCCCCce-EecCCHHHHHHHHCcCEEeeChhhHhhCCCCCCCchHHHH
Confidence            3688899999999999999999642    2 5 2  133 222211  0             122222 24678776665


Q ss_pred             hhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCC-cceEEeeeccCCcch-hhhHHHHhH-cCCCCCcHHHHHhccc
Q psy9394         113 LEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSI-GNYFLLGETLDDAAG-DTFDKIAKM-LDLGYPGGPEISLISE  189 (339)
Q Consensus       113 ~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~-~~~~~~~~~~~~s~G-~~~d~va~~-LG~~~~gg~~le~lA~  189 (339)
                      ...      +.++  ..+ .+++=-||.+-+-.+... +.+.-    +|+.-| .+.|...+. .|.+|+...+   +|+
T Consensus       154 ~~l------f~~~--~~~-r~~lNIGGIaNiT~l~~~~~~v~~----fDtGPgN~LiD~~~~~~~~~~yD~~G~---~A~  217 (370)
T 3cqy_A          154 QQT------FAQV--GKK-RVILNIGGIANITYLPGNSEEVLG----FDTGPGNTLIDAWVQQVKNESYDKNGA---WAA  217 (370)
T ss_dssp             HHH------HCCT--TCC-EEEEEESSEEEEEEECSSSSCCEE----EEEEESSHHHHHHHHHHHCCSSCGGGH---HHH
T ss_pred             HHH------hCCC--CCC-eEEEEccceEEEEEEcCCCCCeEE----EeCCchhHHHHHHHHHHHCcCCCCCCH---hhc
Confidence            433      1122  123 333434665555555432 23221    233333 467766655 5777863222   344


Q ss_pred             cCCCC-----------cccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9394         190 FGDPN-----------IYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAAL  258 (339)
Q Consensus       190 ~g~~~-----------~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~  258 (339)
                      .|+..           ++..|.| ++.+.-.|..    ..+...++..    ...+.+|+.+.+-+..+..|++.++++.
T Consensus       218 ~G~v~~~lL~~ll~~pyf~~~pP-KStGRE~F~~----~~l~~~l~~~----~~l~~~Dv~ATLt~~TA~sIa~~~~~~~  288 (370)
T 3cqy_A          218 SGKTDPQLLAQLLSHPYFSLAYP-KSTGRELFNQ----AWLEQQLSAF----NQLNEEDIQSTLLDLTCHSIAQDILKLA  288 (370)
T ss_dssp             HSCCCHHHHHHHHTCGGGGSCSS-CCCCSSSSSH----HHHHHHTTTC----TTSCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCccHHHHHHHhcCccccCCCC-CccChhhcCH----HHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44321           2333323 1111113431    1123333221    1235889999999988888888887652


Q ss_pred             HHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCC-CCCCh--hHHHHHHHHHHHHHhcCCCC
Q psy9394         259 KNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKK-EFCTD--NGAMIAFAGAMRIENNYKSE  323 (339)
Q Consensus       259 ~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~-~~~~D--~G~aiG~a~~~~~~~~~~~~  323 (339)
                         +.+.|+++||=+.|..|.++|.+++.  +..|.-... -...|  .++++|+.+++.+ .|.+.+
T Consensus       289 ---~~~~v~vcGGGa~N~~Lm~~L~~~l~--~~~v~~t~~~Gi~~d~~EA~aFA~LA~~~l-~g~p~n  350 (370)
T 3cqy_A          289 ---QEGELFVCGGGAFNAELMQRLAALLP--GYRIDTTSALGVDPKWAEGIAFAWLAMRYQ-LGLPAN  350 (370)
T ss_dssp             ---SSEEEEEESGGGGCHHHHHHHHHHCT--TEEEEEGGGGTCCTTTHHHHHHHHHHHHHH-TTCCCC
T ss_pred             ---CCCEEEEECCCcCCHHHHHHHHHhCC--CCeeeeHHHhCCChhHHHHHHHHHHHHHHH-cCCCCC
Confidence               45689999999999999999998763  345543332 23455  7888998888865 455555

>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=97.48  E-value=0.026  Score=52.98  Aligned_cols=123  Identities=15%  Similarity=0.122  Sum_probs=76.2

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      +++|||.+.+.+.+++++.+ ++++...+....     .    . .......+.+...++.++++.+.+..++..|+++ 
T Consensus        88 ~~lGIDiGgt~i~~~l~d~~-G~vl~~~~~~~~-----~----~-~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~-  155 (380)
T 2hoe_A           88 YVLGIEVTRDEIAACLIDAS-MNILAHEAHPLP-----S----Q-SDREETLNVMYRIIDRAKDMMEKLGSKLSALTVA-  155 (380)
T ss_dssp             EEEEEEECSSEEEEEEEETT-CCEEEEEEEECC-----S----S-CCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEE-
T ss_pred             eEEEEEECCCEEEEEEECCC-CCEEEEEEEccC-----C----C-CCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEE-
Confidence            68999999999999999976 678876543210     0    0 0123345666778888888777766788888775 


Q ss_pred             CCCCCc---hh--------HHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEe
Q psy9394          82 GPGLPG---SL--------LVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVS  137 (339)
Q Consensus        82 gPG~~t---~l--------r~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~d  137 (339)
                      -||...   +.        .-++.+.+.+...+++|++-.+--.+-+++-....... ..++.+.+.
T Consensus       156 ~pG~vd~~~g~v~~~~~l~w~~~~l~~~l~~~~~~pV~v~NDanaaalaE~~~g~~~-~~~v~l~~G  221 (380)
T 2hoe_A          156 APGPIDTERGIIIDPRNFPLSQIPLANLLKEKYGIEVWVENDADMGAVGEKWYTKRD-DSFAWILTG  221 (380)
T ss_dssp             ESSCEETTTTEECCCSSCTTBTSCHHHHHHHHHCSEEEEEEHHHHHHHHHHHHTTCC-SCEEEEEES
T ss_pred             eeccEECCCCEEeccCCCCCcCCChHHHHHHHhCCCEEEechHHHHHHHHHHhCCCC-CcEEEEEeC
Confidence            244321   10        01123455677778899887777777666543321111 355655554

>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*

Probab=97.47  E-value=0.065  Score=49.32  Aligned_cols=108  Identities=8%  Similarity=0.082  Sum_probs=72.5

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCC-CcCEEEE
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELK-KIDIIAY   79 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~-did~ia~   79 (339)
                      |++||||.+.+.+.+++++.+ ++++.+.+....       . ..+.......+.+...+++++++.++++. ++..|++
T Consensus         6 ~~~lgiDiGgt~~~~~l~d~~-g~i~~~~~~~~~-------~-~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~i~gigi   76 (347)
T 2ch5_A            6 AIYGGVEGGGTRSEVLLVSED-GKILAEADGLST-------N-HWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGL   76 (347)
T ss_dssp             CEEEEEEECTTCEEEEEEETT-SCEEEEEEECCC-------C-HHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEE
T ss_pred             eEEEEEEcCccceEEEEEeCC-CCEEEEEeCCCC-------C-cccCCHHHHHHHHHHHHHHHHHhcCCCcccceeEEEE
Confidence            479999999999999999976 678876543110       0 00001233456677788888888888766 7888888


Q ss_pred             eCCCCCCchhHHHHHHHHHHHHhcC---CCEEeecchhHHhhh
Q psy9394          80 TRGPGLPGSLLVGSSIACSIALSIN---KPVIGINHLEGHLLS  119 (339)
Q Consensus        80 ~~gPG~~t~lr~g~~~ak~la~~~~---~p~~~v~h~~aHa~s  119 (339)
                      + -||.... .....+.+.+...++   .|++-.+--.+.+++
T Consensus        77 ~-~pG~vd~-~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a  117 (347)
T 2ch5_A           77 S-LSGGDQE-DAGRILIEELRDRFPYLSESYLITTDAAGSIAT  117 (347)
T ss_dssp             E-ETTTTCH-HHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHH
T ss_pred             e-ccCCCch-HHHHHHHHHHHHhcCCCCceEEEECcHHHHHHh
Confidence            6 4776532 123345566777775   898877777777766

>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}

Probab=97.38  E-value=0.072  Score=48.13  Aligned_cols=118  Identities=14%  Similarity=0.113  Sum_probs=67.6

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |+++|||.+.+.+.+++++.+ ++++...+...           +..    ..+.+...+...+++    ..++..|+++
T Consensus         4 m~~lgiDiGgt~i~~~l~d~~-G~il~~~~~~~-----------~~~----~~~~~~~~i~~~~~~----~~~i~gigi~   63 (297)
T 4htl_A            4 MKIAAFDIGGTALKMGVVLPH-GEIILTKSAEI-----------SGS----DGDQILAEMKVFLAE----NTDVTGIAVS   63 (297)
T ss_dssp             CCEEEEEECSSEEEEEEECTT-SCEEEEEEEEC-----------STT----CHHHHHHHHHHHHHT----CTTCCEEEEE
T ss_pred             cEEEEEEeCCCeEEEEEECCC-CCEEEEEEecC-----------CCC----CHHHHHHHHHHHHhh----cCCeeEEEEe
Confidence            889999999999999999876 67887654321           000    012344444555553    2367788765


Q ss_pred             CCCCCCc----------hh--HHHHHHHHHHHHhcCCCEEeecchhHHhhhccccC-CCCCCcEEEEEEeCC
Q psy9394          81 RGPGLPG----------SL--LVGSSIACSIALSINKPVIGINHLEGHLLSPFLSN-NSLTFPFIALLVSGG  139 (339)
Q Consensus        81 ~gPG~~t----------~l--r~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s-~~~~~~~~~l~~dGg  139 (339)
                      . ||...          .+  .-++.+.+.+...+++|++-.+--.|.+++-+... ......++.+.+.-|
T Consensus        64 ~-pG~vd~~~g~v~~~~~l~~w~~~~l~~~l~~~~~~pV~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG  134 (297)
T 4htl_A           64 A-PGYVNPKTGLITMGGAIRRFDNFNLKEWLEAETGLPVAIENDANCALLAEKWLGKGQDLDDFLCLTIGTG  134 (297)
T ss_dssp             E-SSEECTTTCEEEECTTCGGGTTEEHHHHHHHHHCSCEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS
T ss_pred             c-CcceeCCCCEEEeCCCCCCccCCCHHHHHHHHHCcCEEEecHHHHHHHHHHHhCCCCCCCcEEEEEECcc
Confidence            3 33221          01  11223456677778999877777666666543321 111235566665533

>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}

Probab=97.21  E-value=0.048  Score=50.10  Aligned_cols=104  Identities=14%  Similarity=0.140  Sum_probs=62.4

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |+++|||.+.+.+.+++++.+ ++++...+...           +........+.+...+++++++.+    .+..|+++
T Consensus        24 ~~~lgiDiGgt~i~~~l~d~~-G~il~~~~~~~-----------~~~~~~~~~~~i~~~i~~~~~~~~----~~~gigi~   87 (327)
T 4db3_A           24 AMYYGFDVGGTKIEFGAFNEK-LERVATERVPT-----------PTDDYPLLLETIAGLVAKYDQEFA----CEGKIGLG   87 (327)
T ss_dssp             CCEEEEEECSSEEEEEEECTT-CCEEEEEEEEC-----------CTTCHHHHHHHHHHHHHHHHHHHT----SCCEEEEE
T ss_pred             cEEEEEEECCCEEEEEEEeCC-CcEEEEEEecC-----------CCCCHHHHHHHHHHHHHHHHHhcC----CccEEEEE
Confidence            457999999999999999876 67887654321           110112334445566666666543    35666654


Q ss_pred             CCCCCCc---h--------hHHHHHHHHHHHHhcCCCEEeecchhHHhhhcc
Q psy9394          81 RGPGLPG---S--------LLVGSSIACSIALSINKPVIGINHLEGHLLSPF  121 (339)
Q Consensus        81 ~gPG~~t---~--------lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~  121 (339)
                      . ||...   +        ...+..+.+.|...+++|++-.+--.+-+++-.
T Consensus        88 ~-pG~vd~~~g~v~~~~~~~~~~~~l~~~l~~~~~~pV~v~NDa~aaalgE~  138 (327)
T 4db3_A           88 L-PGMEDADDATVLTVNVPAAKGKPLRADLEAKIGRSVKIENDANCFALSEA  138 (327)
T ss_dssp             E-SEEECTTTCCEEESSSGGGTTSCHHHHHHHHHSSCCEEEEHHHHHHHHHH
T ss_pred             e-eccEeCCCCEEEcCCCccccCCCHHHHHHHHHCCCEEEecchhHHHHHHH
Confidence            2 33321   1        001223456677778899877777777666644

>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}

Probab=97.16  E-value=0.046  Score=49.62  Aligned_cols=120  Identities=15%  Similarity=0.185  Sum_probs=68.4

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |+++|||.+.+.+.+++++.+ + ++...+...           +......-.+.+...+++++++.   ..++..|+++
T Consensus         1 M~~lgiDiGgt~i~~~l~d~~-~-~l~~~~~~~-----------~~~~~~~~~~~i~~~i~~~~~~~---~~~i~gigi~   64 (302)
T 3vov_A            1 MKVVGLDLGGTKIAAGVFDGK-R-LLSKVVVPT-----------PKEGGERVAEALAEAAERAEREA---GVRGEAIGLG   64 (302)
T ss_dssp             CCEEEEEECSSEEEEEEECSS-S-BSCCEEEEC-----------CSSCHHHHHHHHHHHHHHHHHHH---TCCCSSEEEE
T ss_pred             CEEEEEEEcCCEEEEEEEeCC-C-cEEEEEEcC-----------CCCChHHHHHHHHHHHHHHHhhc---cCCceEEEEE
Confidence            899999999999999999987 4 554333221           11011233444556677766654   2467777765


Q ss_pred             CCCCCCc---h-------h--HHHHHHHHHHHHhcCCCEEeecchhHHhhhccccC-CCCCCcEEEEEEe
Q psy9394          81 RGPGLPG---S-------L--LVGSSIACSIALSINKPVIGINHLEGHLLSPFLSN-NSLTFPFIALLVS  137 (339)
Q Consensus        81 ~gPG~~t---~-------l--r~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s-~~~~~~~~~l~~d  137 (339)
                      . ||...   +       +  .-++.+.+.+...+++|++-.+--.+-+++-+... ......++.+.+.
T Consensus        65 ~-pG~vd~~~g~v~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~aaal~E~~~g~~~~~~~~~~l~~G  133 (302)
T 3vov_A           65 T-PGPLDFRRGVIRFAPNIPGVQDFPIRRILEEATGRPVFLENDANAAALAEHHLGAAQGEESSLYLTVS  133 (302)
T ss_dssp             E-SSCEETTTTEEC---CCTTCTTCCHHHHHHHHHSSCEEEEEHHHHHHHHHHHHSTTTTCSCEEEEEES
T ss_pred             e-cccEeCCCCEEEcCCCCCCcCCCChHHHHHHhhCCCEEEEechHHHHHHHHHhCCCCCCCCEEEEEEC
Confidence            3 44321   1       0  11122456677778899887777767666544321 1112355555554

>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=97.14  E-value=0.17  Score=48.25  Aligned_cols=123  Identities=13%  Similarity=0.096  Sum_probs=77.4

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      .++|||.+.+.+.+++++.+ ++++...+...     +.    .  ......+.+...++.++++.+++..++..|+++ 
T Consensus       109 ~~lGIDiGgt~i~~~l~d~~-G~il~~~~~~~-----~~----~--~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~-  175 (429)
T 1z05_A          109 QFLSMRLGRGYLTIALHELG-GEVLIDTKIDI-----HE----I--DQDDVLARLLFEIEEFFQTYAAQLDRVTSIAIT-  175 (429)
T ss_dssp             EEEEEEEETTEEEEEEEETT-SCEEEEEEEEC-----CC----C--BHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEE-
T ss_pred             EEEEEEECCCEEEEEEECCC-CCEEEEEEEcC-----CC----C--CHHHHHHHHHHHHHHHHHhcCCCcCceEEEEEe-
Confidence            57999999999999999976 67887654321     00    0  123445667788899999888877778777765 


Q ss_pred             CCCCC---ch-h-------HHHHHHHHHHHHhcCCCEEeecchhHHhhhccccC-CCCCCcEEEEEEe
Q psy9394          82 GPGLP---GS-L-------LVGSSIACSIALSINKPVIGINHLEGHLLSPFLSN-NSLTFPFIALLVS  137 (339)
Q Consensus        82 gPG~~---t~-l-------r~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s-~~~~~~~~~l~~d  137 (339)
                      -||..   ++ +       .-++.+.+.+...+++|++-.+--.+.+++-+... +.....++.+.+.
T Consensus       176 ~pG~vd~~~g~v~~~~~l~w~~~~l~~~L~~~~~~pV~v~NDa~aaalaE~~~g~~~~~~~~v~l~~G  243 (429)
T 1z05_A          176 LPGLVNSEQGIVLQMPHYNVKNLALGPEIYKATGLPVFVANDTRAWALAEKLFGHSQDVDNSVLISIH  243 (429)
T ss_dssp             ESSEEETTTTEEEECSSSBCSSBCHHHHHHHHHCSCEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEES
T ss_pred             ccCcEeCCCCeEeecCCCCCCCCCHHHHHHHHhCCCEEEechhHHHHHHHHHhCCCCCCCcEEEEEEC
Confidence            24432   11 0       01123456677778999988787777766643321 1112355666554

>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A

Probab=97.12  E-value=0.03  Score=52.94  Aligned_cols=125  Identities=15%  Similarity=0.153  Sum_probs=76.1

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      +++|||.+.+.+.+++++.+ ++++...+...     +..+  +    ....+.+...++.++++.+++..++..|+++.
T Consensus        86 ~~lgiDiG~t~i~~~l~d~~-G~il~~~~~~~-----~~~~--~----~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~  153 (406)
T 1z6r_A           86 HYLSLRISRGEIFLALRDLS-SKLVVEESQEL-----ALKD--D----LPLLDRIISHIDQFFIRHQKKLERLTSIAITL  153 (406)
T ss_dssp             EEEEEEEETTEEEEEEEETT-CCEEEEEEEEC-----CSSC--S----SCHHHHHHHHHHHHHHHTGGGCCCEEEEEEEE
T ss_pred             EEEEEEEcCCEEEEEEEcCC-CCEEEEEEecC-----CCCC--H----HHHHHHHHHHHHHHHHhcCCCcCceeEEEEEe
Confidence            68999999999999999976 67887654321     0000  1    12345667788888888887767888887652


Q ss_pred             CCCCCc---h-------h--HHHHHHHHHHHHhcCCCEEeecchhHHhhhcccc-CCCCCCcEEEEEEeCC
Q psy9394          82 GPGLPG---S-------L--LVGSSIACSIALSINKPVIGINHLEGHLLSPFLS-NNSLTFPFIALLVSGG  139 (339)
Q Consensus        82 gPG~~t---~-------l--r~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~-s~~~~~~~~~l~~dGg  139 (339)
                       ||...   +       +  ..++.+.+.+...+++|++-.+--.+.+++-+.. .......++.+.+.-|
T Consensus       154 -pG~vd~~~g~v~~~~~l~~w~~~~l~~~l~~~~~~pv~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG  223 (406)
T 1z6r_A          154 -PGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHN  223 (406)
T ss_dssp             -SSEEETTTTEEEECTTCTTCSSBCHHHHHHHHHSSCEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS
T ss_pred             -ecCEeCCCCEEecCCCCCCccCCCHHHHHHHHHCCCEEEechhHHHHHHHHHhcCCCCCCcEEEEEECCc
Confidence             33210   1       1  1122345566777889988777777766654322 1111235566655433

>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*

Probab=97.08  E-value=0.11  Score=48.91  Aligned_cols=102  Identities=13%  Similarity=0.227  Sum_probs=61.6

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeeccccc--ccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHK--EYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAY   79 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~--~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~   79 (339)
                      ++||||.+...++++|++.+  +++...++.... ..  .+...      ....+.....+.+++++.++...++..| +
T Consensus         3 ~vlgidiGgt~ik~al~d~~--~il~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~i~~~l~~~~~~~~~i~gI-i   72 (381)
T 1saz_A            3 RILTINPGSTSTKLSIFEDE--RMVKMQNFSHSP-DELGRFQKI------LDQLEFREKIARQFVEETGYSLSSFSAF-V   72 (381)
T ss_dssp             EEEEEEECSSEEEEEEEETT--EEEEEEEEECCH-HHHHTCSSG------GGGHHHHHHHHHHHHHTTTCCGGGCSEE-E
T ss_pred             eEEEEECCccceeEEEEecc--hheeeeecccCc-ccccchhhH------HHHHHHHHHHHHHHHHHcCCCccCceEE-E
Confidence            69999999999999999977  687765432200 00  00000      0111222567778888888777788888 5


Q ss_pred             eCCCCCC---ch----------------------hHHHHHHHHHHHHhcCCCEEeecchh
Q psy9394          80 TRGPGLP---GS----------------------LLVGSSIACSIALSINKPVIGINHLE  114 (339)
Q Consensus        80 ~~gPG~~---t~----------------------lr~g~~~ak~la~~~~~p~~~v~h~~  114 (339)
                      +. ||..   +|                      ...+...++.+...+++|++-.+.-.
T Consensus        73 ~~-pG~vd~~~G~~~~i~~~~~~~l~~~~~~~~~~nl~~~l~~~l~~~~~~Pv~v~NDan  131 (381)
T 1saz_A           73 SR-GGLLDPIPGGVYLVDGLMIKTLKSGKNGEHASNLGAIIAHRFSSETGVPAYVVDPVV  131 (381)
T ss_dssp             EE-CCSCSCBCSSEEECCHHHHHHHHHTTTCCCTTHHHHHHHHHHHHHHCCCEEEESCTT
T ss_pred             ec-CCCCCCCCCceEecCHHHHHHHHhcccccChhhhhHHHHHHHHHhcCCCEEEeCCCc
Confidence            42 2221   11                      11245566677778899987666554

>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}

Probab=97.04  E-value=0.064  Score=47.92  Aligned_cols=62  Identities=16%  Similarity=0.205  Sum_probs=45.8

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      ++|+||.++..++.++++++  +++...++...               .+....+...+..+++..++++++++.|+++
T Consensus         3 MlL~IDIGNT~iK~gl~d~~--~l~~~~r~~T~---------------~~t~de~~~~l~~ll~~~~~~~~~I~~iiIS   64 (266)
T 3djc_A            3 LILCIDVGNSHIYGGVFDGD--EIKLRFRHTSK---------------VSTSDELGIFLKSVLRENNCSPETIRKIAIC   64 (266)
T ss_dssp             CEEEEEECSSEEEEEEEETT--EEEEEEEEECS---------------CCCHHHHHHHHHHHHHTTTCCGGGCCEEEEE
T ss_pred             eEEEEEECCCeEEEEEEECC--EEEEEEEecCC---------------CCCHHHHHHHHHHHHHHcCCChhhceEEEEe
Confidence            68999999999999999988  68765544320               0112234556788889999988899988765

>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}

Probab=96.86  E-value=0.23  Score=45.26  Aligned_cols=122  Identities=16%  Similarity=0.192  Sum_probs=69.8

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      ++||||.+...+.+++++.+ ++++...+.....          ........+.+...++++++    +..++..|+++.
T Consensus        20 ~~lgidiggt~i~~~l~d~~-g~il~~~~~~~~~----------~~~~~~~~~~i~~~i~~~~~----~~~~i~gigi~~   84 (321)
T 3r8e_A           20 MILGIDVGGTSVKFGLVTPE-GEIQNATRFMTAD----------WVNGIGFVESMKLEIGNFLK----QYPIVKGVGIGW   84 (321)
T ss_dssp             CEEEEECCSSEEEEEEECTT-CCEEEEEEEEHHH----------HHTTTCHHHHHHHHHHHHHH----HCTTCCEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEcCC-CcEEEEEEEeCCC----------CCCHHHHHHHHHHHHHHHHh----ccCCeeEEEEEe
Confidence            47999999999999999876 6788765432100          00001123445556666665    234788887753


Q ss_pred             CCCCCc---h-------h--HHHHHHHHHHHHhc-CCCEEeecchhHHhhhcccc-CCCCCCcEEEEEEeCC
Q psy9394          82 GPGLPG---S-------L--LVGSSIACSIALSI-NKPVIGINHLEGHLLSPFLS-NNSLTFPFIALLVSGG  139 (339)
Q Consensus        82 gPG~~t---~-------l--r~g~~~ak~la~~~-~~p~~~v~h~~aHa~s~~~~-s~~~~~~~~~l~~dGg  139 (339)
                       ||...   +       +  .-++.+.+.+...+ ++|++-.+--.+-+++-... .......++.+.+.-|
T Consensus        85 -pG~vd~~~g~v~~~~~l~~w~~~~l~~~l~~~~~~~pV~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG  155 (321)
T 3r8e_A           85 -PGLVSLDRTKVILLPNIPSVVNVPIVEILRSEFPHIHFKIENDAKCAALGEYYFGENKRMQTFILLALGTG  155 (321)
T ss_dssp             -SSEECTTSCCEEEBTTBCCCCSCCHHHHHHHHCTTSEEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS
T ss_pred             -cccEECCCCEEEeCCCCccccCCCHHHHHHHHcCCCCEEEEchHHHHHHHHHHhCCCCCCCcEEEEEECCc
Confidence             44321   1       0  11233456677788 99998777777766654332 1111235566665533

>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A

Probab=96.80  E-value=0.18  Score=46.42  Aligned_cols=123  Identities=11%  Similarity=0.071  Sum_probs=71.0

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      +++||||.+...+.+++++.+ ++++...+...           +. ......+.+...++.++++.+....++..|+++
T Consensus        30 ~~~lgiDiGgt~i~~~l~d~~-G~il~~~~~~~-----------~~-~~~~~~~~i~~~i~~~~~~~~~~~~~i~gigi~   96 (343)
T 2yhw_A           30 LSALAVDLGGTNLRVAIVSMK-GEIVKKYTQFN-----------PK-TYEERINLILQMCVEAAAEAVKLNCRILGVGIS   96 (343)
T ss_dssp             EEEEEEEECSSEEEEEEEETT-SCEEEEEEEEC-----------CS-SHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             cEEEEEEECCCEEEEEEECCC-CcEEEEEEEcC-----------CC-CHHHHHHHHHHHHHHHHHhcccccCceEEEEEe
Confidence            368999999999999999976 67887543321           00 012334556677777777655444567777664


Q ss_pred             CCCCCC---ch-------h---HHHHHHHHHHHHhcCCCEEeecchhHHhhhccccC-CCCCCcEEEEEEe
Q psy9394          81 RGPGLP---GS-------L---LVGSSIACSIALSINKPVIGINHLEGHLLSPFLSN-NSLTFPFIALLVS  137 (339)
Q Consensus        81 ~gPG~~---t~-------l---r~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s-~~~~~~~~~l~~d  137 (339)
                       -||..   ++       +   ..++.+.+.+...+++|++-.+--.+-+++-+... ......++.+.+.
T Consensus        97 -~pG~vd~~~g~v~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~aaal~E~~~g~~~~~~~~v~i~~G  166 (343)
T 2yhw_A           97 -TGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDTLHLPVWVDNDGNCAALAERKFGQGKGLENFVTLITG  166 (343)
T ss_dssp             -ESSEEETTTTEEEECCTTSSSCSSEECHHHHHHHHCSCEEEEEHHHHHHHHHHHTSTTTTCSCEEEEEES
T ss_pred             -cccCEeCCCCEEEeCCcCCCCCcCCCHHHHHHHHHCCCEEEechhHHHHHHHHHhCCCCCCCcEEEEEEC
Confidence             23421   01       0   00112345566677899887777777666543321 1111355555554

>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5

Probab=96.74  E-value=0.3  Score=43.79  Aligned_cols=102  Identities=8%  Similarity=0.023  Sum_probs=57.9

Q ss_pred             EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCC
Q psy9394           3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRG   82 (339)
Q Consensus         3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~g   82 (339)
                      ++|||.+...+.++|++ + ++++...+.....   +.     ........+.+...+++.+   +.+..++..|+++ -
T Consensus         2 ~lgiDiGGT~~~~~l~d-~-g~il~~~~~~~~~---~~-----~~~~~~~~~~i~~~i~~~~---~~~~~~i~~igig-~   67 (291)
T 1zbs_A            2 ILIGDSGSTKTDWCIAK-E-GKSLGRFQTSGIN---PF-----QQDRNEIDTALRSEVLPAI---GQKASSIRAVYFY-G   67 (291)
T ss_dssp             EEEEEECSSEEEEEEEE-T-TEEEEEEEEECCC---TT-----TSCHHHHHHHHTTTTHHHH---TTSTTTCCEEEEE-E
T ss_pred             EEEEEeCccceEEEEEe-C-CeEEEEEECCCCC---cc-----cCCHHHHHHHHHHHHHHHh---CCCcccccEEEEE-C
Confidence            69999999999999999 5 5787765331100   00     0001122333334444433   3445678888775 3


Q ss_pred             CCCCchhHHHHHHHHHHHHhcC--CCEEeecchhHHhhhc
Q psy9394          83 PGLPGSLLVGSSIACSIALSIN--KPVIGINHLEGHLLSP  120 (339)
Q Consensus        83 PG~~t~lr~g~~~ak~la~~~~--~p~~~v~h~~aHa~s~  120 (339)
                      ||..  .+.+..+.+.+....+  .|+.-.+.-.+.+++.
T Consensus        68 pG~~--~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aa~ge  105 (291)
T 1zbs_A           68 AGCT--PAKAPMLNEALDSMLPHCDRIEVAGDMLGAARAL  105 (291)
T ss_dssp             TTCC--TTTHHHHHHHHHHHSTTCSEEEEECHHHHHHHHH
T ss_pred             CCCC--hHHHHHHHHHHHHhcCCCCcEEEeCcHHHHHHhh
Confidence            6654  1223344556666677  4876666666655554

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*

Probab=96.61  E-value=0.017  Score=56.43  Aligned_cols=85  Identities=19%  Similarity=0.150  Sum_probs=70.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF  310 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~  310 (339)
                      ..+.++++++.+.++-.+.+.++.+.+..|  ++.|.++||.+.|..+++.+.+.+   |.+|.++..    ..+.++|+
T Consensus       373 ~~~~~l~RAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~aks~~~~Qi~Adv~---g~pV~~~~~----~e~~alGa  445 (501)
T 3g25_A          373 TEKEHFIRATLESLCYQTRDVMEAMSKDSGIDVQSLRVDGGAVKNNFIMQFQADIV---NTSVERPEI----QETTALGA  445 (501)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSEEEEESGGGGCHHHHHHHHHHH---TSEEEEESC----CCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecchhcCHHHHHHHHHHh---CCceEecCC----CcchHHHH
Confidence            468999999999999999998888876555  579999999999999999998887   788888762    23678899


Q ss_pred             HHHHHHHhcCCCCC
Q psy9394         311 AGAMRIENNYKSES  324 (339)
Q Consensus       311 a~~~~~~~~~~~~~  324 (339)
                      |.....-.|...+.
T Consensus       446 A~la~~a~G~~~~~  459 (501)
T 3g25_A          446 AFLAGLAVGFWESK  459 (501)
T ss_dssp             HHHHHHHTTSSSCT
T ss_pred             HHHHHHHhCccCCH
Confidence            98888888876653

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O

Probab=96.56  E-value=0.02  Score=56.04  Aligned_cols=84  Identities=18%  Similarity=0.109  Sum_probs=69.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF  310 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~  310 (339)
                      ..+.++++++.+.++-.+.+.++.+.+..|  ++.|.++||.+.|..+++.+.+.+   |.+|.++.    ...+.++|+
T Consensus       372 ~~~~~l~RAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~---g~pV~~~~----~~e~~alGa  444 (506)
T 3h3n_X          372 TTKEDFVRATLQAVAYQSKDVIDTMKKDSGIDIPLLKVDGGAAKNDLLMQFQADIL---DIDVQRAA----NLETTALGA  444 (506)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCEEEEESGGGGCHHHHHHHHHHH---TSEEEECS----SSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEecccccCHHHHHHHHHHh---CCeEEecC----CCcchhHHH
Confidence            468999999999999999998888876555  579999999999999999998887   78888875    223678899


Q ss_pred             HHHHHHHhcCCCC
Q psy9394         311 AGAMRIENNYKSE  323 (339)
Q Consensus       311 a~~~~~~~~~~~~  323 (339)
                      |....+-.|...+
T Consensus       445 A~lA~~a~G~~~~  457 (506)
T 3h3n_X          445 AYLAGLAVGFWKD  457 (506)
T ss_dssp             HHHHHHHTTSSCS
T ss_pred             HHHHHHHhCccCC
Confidence            8888877777654

>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*

Probab=96.50  E-value=0.022  Score=56.03  Aligned_cols=85  Identities=19%  Similarity=0.112  Sum_probs=71.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF  310 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~  310 (339)
                      ..+.++++++.+.++-.+.+.++.+.+..|  ++.|.++||.+.|..+++.+.+.+   |.+|.++.    ...+.++|+
T Consensus       371 ~~~~~i~RAvlEgia~~~r~~le~l~~~~g~~~~~i~v~GGgaks~~~~Qi~ADvl---g~pV~~~~----~~E~~alGA  443 (526)
T 3ezw_A          371 VNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDIL---GTRVERPE----VREVTALGA  443 (526)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSEEEEESGGGGCHHHHHHHHHHH---TSEEEEES----CCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECchhhCHHHHHHHHHHH---CCEEEeCC----CCchHHHHH
Confidence            468999999999999999888888877665  579999999999999999998887   78998886    234678999


Q ss_pred             HHHHHHHhcCCCCC
Q psy9394         311 AGAMRIENNYKSES  324 (339)
Q Consensus       311 a~~~~~~~~~~~~~  324 (339)
                      |....+-.|...+.
T Consensus       444 A~lA~~a~G~~~~~  457 (526)
T 3ezw_A          444 AYLAGLAVGFWQNL  457 (526)
T ss_dssp             HHHHHHHTTSSSCG
T ss_pred             HHHHHHHhCCCCCH
Confidence            99998888887663

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*

Probab=96.47  E-value=0.019  Score=56.05  Aligned_cols=84  Identities=19%  Similarity=0.153  Sum_probs=68.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--C-CeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--I-NKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIA  309 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~-~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG  309 (339)
                      ..+.++++++.+.++-.+.+.++.+.+..|  + +.|.++||.+.|..+++.+.+.+   +.+|.++..    ..+.++|
T Consensus       375 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~i~~~GG~a~s~~~~Q~~Adv~---g~pV~~~~~----~e~~alG  447 (503)
T 2w40_A          375 TERSHIVRALLEGIAFQLNEIVDSLTSDMGIEMLHVLRCDGGMTKNKPFMQFNSDII---NTKIEVSKY----KEVTSLG  447 (503)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCEEEESGGGGCHHHHHHHHHHH---TSCEEEESC----SCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccceEEEeCccccCHHHHHHHHHHH---CCeEEecCC----CcchHHH
Confidence            358999999999999999999988876555  4 67999999999999999998887   778887752    2267889


Q ss_pred             HHHHHHHHhcCCCC
Q psy9394         310 FAGAMRIENNYKSE  323 (339)
Q Consensus       310 ~a~~~~~~~~~~~~  323 (339)
                      +|....+-.|...+
T Consensus       448 aA~la~~~~G~~~~  461 (503)
T 2w40_A          448 AAVLAGLEVKIWDS  461 (503)
T ss_dssp             HHHHHHHHTTCSSC
T ss_pred             HHHHHHHHhCccCC
Confidence            88888777776544

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}

Probab=96.46  E-value=0.021  Score=55.83  Aligned_cols=84  Identities=24%  Similarity=0.156  Sum_probs=68.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF  310 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~  310 (339)
                      ..+.++++++.+.++-.+.+.++.+.+..|  ++.|.++||.+.|..+++.+.+.+   |.+|.++..    ..+.++|+
T Consensus       372 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~---g~pV~~~~~----~e~~alGa  444 (504)
T 2d4w_A          372 VNRNHIARAALEATAFQSREVVDAMNADSGVDLTELRVDGGMVANELLMQFQADQL---GVDVVRPKV----AETTALGA  444 (504)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESGGGGCHHHHHHHHHHH---TSCEEEESC----SCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCcccCHHHHHHHHHHh---CCeEEeCCC----CcchHHHH
Confidence            468999999999999999999988876555  578999999999999999998887   788887752    33678898


Q ss_pred             HHHHHHHhcCCCC
Q psy9394         311 AGAMRIENNYKSE  323 (339)
Q Consensus       311 a~~~~~~~~~~~~  323 (339)
                      |....+-.|...+
T Consensus       445 A~lA~~~~G~~~~  457 (504)
T 2d4w_A          445 AYAAGIAVGFWKG  457 (504)
T ss_dssp             HHHHHHHHTSSCS
T ss_pred             HHHHHhhcCccCC
Confidence            8888777776544

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}

Probab=96.39  E-value=0.023  Score=55.72  Aligned_cols=83  Identities=18%  Similarity=0.226  Sum_probs=67.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHH
Q psy9394         234 EKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFA  311 (339)
Q Consensus       234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a  311 (339)
                      .+.++++++.+.++-.+.+.++.+.+ .|  ++.|.++||.+.|..+++.+.+.+   |.+|.++..    ..+.++|+|
T Consensus       395 ~~~~l~RAvlEgia~~~r~~l~~l~~-~g~~~~~i~~~GGgaks~~~~Qi~ADvl---g~pV~~~~~----~e~~alGAA  466 (515)
T 3i8b_A          395 TRENLARAFVEGLLCSQRDCLELIRS-LGASITRILLIGGGAKSEAIRTLAPSIL---GMDVTRPAT----DEYVAIGAA  466 (515)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCCEEEEESGGGGCHHHHHHHHHHH---TSCEEEECC----CCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCEEEEECchhcCHHHHHHHHHHh---CCceEecCC----cccHHHHHH
Confidence            68899999999999988888877654 54  468999999999999999998887   778888762    236789999


Q ss_pred             HHHHHHhcCCCCC
Q psy9394         312 GAMRIENNYKSES  324 (339)
Q Consensus       312 ~~~~~~~~~~~~~  324 (339)
                      .....-.|...++
T Consensus       467 ~lA~~a~G~~~~~  479 (515)
T 3i8b_A          467 RQAAWVLSGETEP  479 (515)
T ss_dssp             HHHHHHHHCCSSC
T ss_pred             HHHHHHcCCCCCh
Confidence            9888878876553

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=96.32  E-value=0.022  Score=55.59  Aligned_cols=82  Identities=18%  Similarity=0.181  Sum_probs=66.7

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF  310 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~  310 (339)
                      ..+.++++++.+.++-.+.+.++.+.+..+  ++.|.++||.+.|..+++.+.+.+   +.+|.++..    ..+.++|+
T Consensus       367 ~~~~~~~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~n~~~~q~~Adv~---g~pV~~~~~----~e~~alGa  439 (495)
T 2dpn_A          367 TSRAHLARAALEGVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQADLL---GVPVAVPEV----TETTALGA  439 (495)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCCCEEEESGGGGCHHHHHHHHHHH---TSCEEEESC----SCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccccCHHHHHHHHHHh---CCeeEecCC----cccHHHHH
Confidence            468999999999999999999888866544  468999999999999999998887   778887752    23678888


Q ss_pred             HHHHHHHhcCC
Q psy9394         311 AGAMRIENNYK  321 (339)
Q Consensus       311 a~~~~~~~~~~  321 (339)
                      |....+-.|..
T Consensus       440 A~la~~a~G~~  450 (495)
T 2dpn_A          440 ALMAGVGAGAL  450 (495)
T ss_dssp             HHHHHHHHTSC
T ss_pred             HHHHHhhcCcC
Confidence            88877776754

>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*

Probab=96.30  E-value=0.62  Score=42.32  Aligned_cols=119  Identities=10%  Similarity=0.158  Sum_probs=68.2

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      ++||||.+.+.+.+++++.+ ++++...+...     +.       ......+.+...+++++++     .++..|+++.
T Consensus         3 ~~lgiDiGgt~i~~~l~d~~-G~i~~~~~~~~-----~~-------~~~~~~~~i~~~i~~~~~~-----~~i~gigi~~   64 (321)
T 3vgl_A            3 LTIGVDIGGTKIAAGVVDEE-GRILSTFKVAT-----PP-------TAEGIVDAICAAVAGASEG-----HDVEAVGIGA   64 (321)
T ss_dssp             EEEEEEECSSEEEEEEECTT-CCBCCCEEEEC-----CS-------SHHHHHHHHHHHHHHHHTT-----CCEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEECCC-CCEEEEEEeeC-----CC-------CHHHHHHHHHHHHHHHHhh-----cCceEEEEec
Confidence            58999999999999999876 67876543321     00       1123344455666666543     2677777652


Q ss_pred             CCCCCc---h-hH-------HHHHHHHHHHHhcCCCEEeecchhHHhhhccccC-CCCCCcEEEEEEeCC
Q psy9394          82 GPGLPG---S-LL-------VGSSIACSIALSINKPVIGINHLEGHLLSPFLSN-NSLTFPFIALLVSGG  139 (339)
Q Consensus        82 gPG~~t---~-lr-------~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s-~~~~~~~~~l~~dGg  139 (339)
                       ||...   + ++       .+..+.+.+...+++|++-.+--.+-+++-+... ......++.+.+.-|
T Consensus        65 -pG~vd~~~g~v~~~~~l~w~~~~l~~~l~~~~~~pv~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG  133 (321)
T 3vgl_A           65 -AGYVDDKRATVLFAPNIDWRHEPLKDKVEQRVGLPVVVENDANAAAWGEYRFGAGQGHDDVICITLGTG  133 (321)
T ss_dssp             -SSEECTTSSCEEECSSSCCEEECHHHHHHHHHCSCEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS
T ss_pred             -cccEeCCCCEEEeCCCCCCcCCCHHHHHhhhhCCCEEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc
Confidence             44321   1 00       1122355677778999887777777666543321 111235566655533

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}

Probab=96.28  E-value=0.02  Score=55.81  Aligned_cols=84  Identities=23%  Similarity=0.175  Sum_probs=66.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAG  312 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~  312 (339)
                      ..+.++++++.+.++-.+.+.++.+.+...++.|.++||.+.|..+++.+.+.+   |.+|.+++.    ..+.++|+|.
T Consensus       364 ~~~~~l~rAvlEgia~~~~~~l~~l~~~~~~~~i~~~GG~a~s~~~~Qi~Adv~---g~pV~~~~~----~e~~alGaA~  436 (497)
T 2zf5_O          364 TGREHLARATLEAIAYLTRDVVDEMEKLVQIKELRVDGGATANDFLMQFQADIL---NRKVIRPVV----KETTALGAAY  436 (497)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCCEEEESGGGGCHHHHHHHHHHH---TSCEEEESC----SCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEeCccccCHHHHHHHHhhc---CCeEEEcCC----CcchHHHHHH
Confidence            468899999999999888888887654324578999999999999999998887   788888762    2368889988


Q ss_pred             HHHHHhcCCCC
Q psy9394         313 AMRIENNYKSE  323 (339)
Q Consensus       313 ~~~~~~~~~~~  323 (339)
                      ...+-.|...+
T Consensus       437 lA~~~~g~~~~  447 (497)
T 2zf5_O          437 LAGLAVDYWAD  447 (497)
T ss_dssp             HHHHHTTSSCC
T ss_pred             HHHHHhCccCC
Confidence            88777776543

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A

Probab=96.24  E-value=0.021  Score=55.43  Aligned_cols=84  Identities=18%  Similarity=0.201  Sum_probs=66.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAF  310 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~  310 (339)
                      ..+.++++++.+.++-.+.+.++.+.+ .+  ++.|.++||.+.|..+++.+.+.+   |.+|.+++   ..+.+.++|+
T Consensus       356 ~~~~~~~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GG~a~s~~~~Qi~Adv~---g~pV~~~~---~~e~~~alGA  428 (484)
T 2itm_A          356 HGPNELARAVLEGVGYALADGMDVVHA-CGIKPQSVTLIGGGARSEYWRQMLADIS---GQQLDYRT---GGDVGPALGA  428 (484)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHT-TTCCCSCEEEESGGGCCHHHHHHHHHHH---CCCEEEES---CTTSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcceEEEEeccccCHHHHHHHHHHh---CCeEEeCC---CCCcccHHHH
Confidence            358899999999999988888887754 34  578999999999999999998887   78888886   2333477888


Q ss_pred             HHHHHHHhcCCCC
Q psy9394         311 AGAMRIENNYKSE  323 (339)
Q Consensus       311 a~~~~~~~~~~~~  323 (339)
                      |....+-.|...+
T Consensus       429 A~lA~~~~g~~~~  441 (484)
T 2itm_A          429 ARLAQIAANPEKS  441 (484)
T ss_dssp             HHHHHHHHCTTSC
T ss_pred             HHHHHHHcCCcCC
Confidence            8877776675443

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}

Probab=96.19  E-value=0.031  Score=54.87  Aligned_cols=84  Identities=20%  Similarity=0.065  Sum_probs=67.0

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHH---h-CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKN---T-GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMI  308 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~---~-~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~ai  308 (339)
                      ..+.++++++.+.++-.+.+.++.+.+.   . .++.|.++||.+.|..+++.+.+.+   |.+|.++.    ...+.++
T Consensus       392 ~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~g~~~~i~~~GGgaks~~~~Qi~ADvl---g~pV~~~~----~~e~~al  464 (520)
T 4e1j_A          392 TGPAEFARAALEAVCYQTRDLLEAMHKDWRRNGNDTVLRVDGGMVASDWTMQRLSDLL---DAPVDRPV----ILETTAL  464 (520)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCEEEESGGGGCHHHHHHHHHHH---TSCEEEES----CCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcceEEEeCccccCHHHHHHHHHHh---CCeEEecC----CCccHHH
Confidence            4688999999999998888888877654   2 3678999999999999999998887   78888875    2236788


Q ss_pred             HHHHHHHHHhcCCCC
Q psy9394         309 AFAGAMRIENNYKSE  323 (339)
Q Consensus       309 G~a~~~~~~~~~~~~  323 (339)
                      |+|.+...-.|...+
T Consensus       465 GAA~lA~~a~G~~~~  479 (520)
T 4e1j_A          465 GVAWLAGSRAGVWPN  479 (520)
T ss_dssp             HHHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHcCCcCC
Confidence            998888887787655

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*

Probab=96.08  E-value=0.044  Score=53.66  Aligned_cols=83  Identities=16%  Similarity=0.155  Sum_probs=67.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEE-EccCCCCCChhHHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTV-FYPKKEFCTDNGAMIAFA  311 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v-~~~~~~~~~D~G~aiG~a  311 (339)
                      ..+.++++++.+.++-.+.+.++.+.+.. ++.|.++||.+.|..+++.+.+.+   |.+| .++.    ...+.++|+|
T Consensus       374 ~~~~~l~RAvlEgia~~~~~~~~~l~~g~-~~~i~~~GGga~s~~~~Qi~ADv~---g~pV~~~~~----~~e~~alGaA  445 (511)
T 3hz6_A          374 TTRAQILLAVLEGAALSLRWCAELLGMEK-VGLLKVVGGGARSEAWLRMIADNL---NVSLLVKPD----AHLHPLRGLA  445 (511)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTGGG-CCEEEEESGGGGCHHHHHHHHHHH---TCEEEECCC----GGGHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEeCchhcCHHHHHHHHHHH---CCeeEEecC----CCCchHHHHH
Confidence            35889999999999988888888776522 789999999999999999998887   7888 7765    3557788998


Q ss_pred             HHHHHHhcCCCC
Q psy9394         312 GAMRIENNYKSE  323 (339)
Q Consensus       312 ~~~~~~~~~~~~  323 (339)
                      ....+-.|...+
T Consensus       446 ~lA~~a~G~~~~  457 (511)
T 3hz6_A          446 ALAAVELEWSHS  457 (511)
T ss_dssp             HHHHHHTTSCSC
T ss_pred             HHHHHHhCCcCC
Confidence            888777776654

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}

Probab=95.93  E-value=0.046  Score=53.47  Aligned_cols=84  Identities=10%  Similarity=0.042  Sum_probs=68.0

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKN-TGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFA  311 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~-~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a  311 (339)
                      ..+.++++++.+.++-.+.+.++.+.+. ..++.|.++||.+.|..+++.+.+.+   |.+|.+++    ...+.++|+|
T Consensus       370 ~~~~~l~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~---g~pV~~~~----~~e~~alGaA  442 (508)
T 3ifr_A          370 HTRGHLWRALLEAVALAFRHHVAVLDDIGHAPQRFFASDGGTRSRVWMGIMADVL---QRPVQLLA----NPLGSAVGAA  442 (508)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEESGGGGCHHHHHHHHHHH---TSCEEEEE----CCSTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcccCHHHHHHHHHHh---CCeEEecC----CCCchHHHHH
Confidence            3588999999999998888888877643 12468999999999999999998887   78888886    2336789999


Q ss_pred             HHHHHHhcCCCC
Q psy9394         312 GAMRIENNYKSE  323 (339)
Q Consensus       312 ~~~~~~~~~~~~  323 (339)
                      ....+-.|...+
T Consensus       443 ~lA~~a~G~~~~  454 (508)
T 3ifr_A          443 WVAAIGGGDDLG  454 (508)
T ss_dssp             HHHHHHTCSSCC
T ss_pred             HHHHHHhCCCCC
Confidence            998888887655

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*

Probab=95.89  E-value=0.048  Score=53.26  Aligned_cols=84  Identities=19%  Similarity=0.157  Sum_probs=68.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHH
Q psy9394         233 KEKANIARGFLDAIIDVLTFKCIAALKNT-GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFA  311 (339)
Q Consensus       233 ~~~~diAa~~q~~l~~~l~~~~~~~~~~~-~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a  311 (339)
                      ..+.++++++.+.++-.+.+.++.+.+.. .++.|.++||.+.|..+++.+.+.+   |.+|.++.    ...+.++|+|
T Consensus       363 ~~~~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~---g~pV~~~~----~~e~~alGaA  435 (504)
T 3ll3_A          363 HQKPEMARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIF---NVPIVTMK----EQQSGTLAAM  435 (504)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGGGCSHHHHHHHHHHH---TSCEEEES----CSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCchhcCHHHHHHHHHhh---CCeEEecC----CCCchhHHHH
Confidence            35889999999999988888888775432 3579999999999999999998887   78888875    2337789999


Q ss_pred             HHHHHHhcCCCC
Q psy9394         312 GAMRIENNYKSE  323 (339)
Q Consensus       312 ~~~~~~~~~~~~  323 (339)
                      ....+-.|...+
T Consensus       436 ~lA~~a~G~~~~  447 (504)
T 3ll3_A          436 FLARQALGLNQD  447 (504)
T ss_dssp             HHHHHHTTSCCS
T ss_pred             HHHHHHcCccCC
Confidence            998888887665

>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}

Probab=95.76  E-value=1.1  Score=40.55  Aligned_cols=120  Identities=14%  Similarity=0.111  Sum_probs=65.0

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      +++|||.+.+.+.+++++.+ ++++...+...           ++.....-.+.+...+++++++.+.   ++..|+++.
T Consensus         8 ~~lgiDiGgt~i~~~l~d~~-G~il~~~~~~~-----------~~~~~~~~~~~i~~~i~~~~~~~~~---~i~gigi~~   72 (310)
T 3htv_A            8 VVAGVDMGATHIRFCLRTAE-GETLHCEKKRT-----------AEVIAPGLVSGIGEMIDEQLRRFNA---RCHGLVMGF   72 (310)
T ss_dssp             EEEEEEECSSEEEEEEEETT-SCEEEEEEEEH-----------HHHHTTCHHHHHHHHHHHHHHHHTE---EEEEEEEEE
T ss_pred             EEEEEEeCCCEEEEEEECCC-CCEEEEEEecC-----------ccccHHHHHHHHHHHHHHHHHhcCC---CeeEEEEec
Confidence            68999999999999999977 67887543321           0000011223344556666655443   456666542


Q ss_pred             CCCCCc---h-------h--HH--HHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEe
Q psy9394          82 GPGLPG---S-------L--LV--GSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVS  137 (339)
Q Consensus        82 gPG~~t---~-------l--r~--g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~d  137 (339)
                       ||...   +       +  +-  +..+.+.|...+++|++-.+.-.+-+++...........++.+.+.
T Consensus        73 -pG~vd~~~g~v~~~~~l~~~~~~~~~l~~~l~~~~~~pv~v~NDanaaa~~e~~~~~~~~~~~~~v~~G  141 (310)
T 3htv_A           73 -PALVSKDKRTIISTPNLPLTAADLYDLADKLENTLNCPVEFSRDVNLQLSWDVVENRLTQQLVLAAYLG  141 (310)
T ss_dssp             -SSCBCTTSSCBCSCCSSSCCHHHHTTHHHHHHHHHTSCEEEEEHHHHHHHHHHHHTTCTTSCEEEEEES
T ss_pred             -cccEeCCCCEEEeCCCCCCccccCccHHHHHHHHhCCCEEEeeHHHHHHHHHHhhcccCCceEEEEEec
Confidence             44321   1       1  11  1234567777889998766655554432222222112345555554

>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}

Probab=95.70  E-value=1.1  Score=39.94  Aligned_cols=62  Identities=16%  Similarity=0.262  Sum_probs=44.7

Q ss_pred             EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      +|.||.++..++.++++++  +++...+++...              .+....+...+..+++..++++.+++.|+++
T Consensus         2 lL~IDIGNT~ik~gl~~~~--~l~~~~r~~T~~--------------~~t~de~~~~l~~ll~~~~~~~~~i~~iiIS   63 (268)
T 2h3g_X            2 IFVLDVGNTNAVLGVFEEG--ELRQHWRMETDR--------------HKTEDEYGMLVKQLLEHEGLSFEDVKGIIVS   63 (268)
T ss_dssp             EEEEEECSSEEEEEEEETT--EEEEEEEEECCT--------------TCCHHHHHHHHHHHHHHTTCCGGGCCEEEEE
T ss_pred             EEEEEECcCcEEEEEEECC--EEEEEEEecCCC--------------cCCHHHHHHHHHHHHHHcCCCcccCcEEEEE
Confidence            6899999999999999987  687655443210              1112334557788888889988889877664

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*

Probab=95.50  E-value=0.1  Score=51.57  Aligned_cols=82  Identities=10%  Similarity=0.099  Sum_probs=65.1

Q ss_pred             cHHHH---HHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHH
Q psy9394         234 EKANI---ARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMI  308 (339)
Q Consensus       234 ~~~di---Aa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~ai  308 (339)
                      .+.++   .+++.+.++-.+.+.++.+.+ .|  ++.|.++||.+.|..+++.+.+.+   |.+|.++.    ...+.++
T Consensus       410 ~~~~l~r~~rAvlEgia~~~r~~~e~l~~-~g~~~~~i~~~GG~aks~~~~Qi~ADv~---g~pV~~~~----~~e~~al  481 (554)
T 3l0q_A          410 TPEDMALRYLATIQALALGTRHIIETMNQ-NGYNIDTMMASGGGTKNPIFVQEHANAT---GCAMLLPE----ESEAMLL  481 (554)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCCCCEEEEESGGGGCHHHHHHHHHHH---CCEEEEES----CSCHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCEEEEeCccccCHHHHHHHHHhh---CCeEEecC----CCcchHH
Confidence            57888   568888888777777776654 44  568999999999999999998887   78998886    2347789


Q ss_pred             HHHHHHHHHhcCCCC
Q psy9394         309 AFAGAMRIENNYKSE  323 (339)
Q Consensus       309 G~a~~~~~~~~~~~~  323 (339)
                      |+|....+-.|...+
T Consensus       482 GAA~lA~~a~G~~~~  496 (554)
T 3l0q_A          482 GSAMMGTVAAGVFES  496 (554)
T ss_dssp             HHHHHHHHHTTSSSS
T ss_pred             HHHHHHHHHcCCcCC
Confidence            999888887777655

>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*

Probab=95.40  E-value=0.04  Score=54.11  Aligned_cols=76  Identities=17%  Similarity=0.118  Sum_probs=55.7

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      ++||||.+|..+.++|++.+ +++++..... .+.+.|..|.... ....-++.+...++++++++++++.+|.+|+++
T Consensus         5 YvlgID~GTss~Ka~l~d~~-G~~va~~~~~-~~~~~p~~G~~Eq-dp~~~w~~~~~~i~~~l~~~~~~~~~I~aIgis   80 (526)
T 3ezw_A            5 YIVALDQGTTSSRAVVMDHD-ANIISVSQRE-FEQIYPKPGWVEH-DPMEIWATQSSTLVEVLAKADISSDQIAAIGIT   80 (526)
T ss_dssp             EEEEEEECSSEEEEEEECTT-CCEEEEEEEE-CCCBCSSTTCCEE-CHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred             EEEEEEccccceeeeEEcCC-CCEEEEEEEe-cCcccCCCCcEEE-CHHHHHHHHHHHHHHHHHHcCCChhhEEEEEEe
Confidence            58999999999999999987 7888764322 1223344454322 223456677788999999999999999999876

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*

Probab=95.26  E-value=0.16  Score=49.28  Aligned_cols=79  Identities=16%  Similarity=0.130  Sum_probs=62.9

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHH
Q psy9394         232 KKEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIA  309 (339)
Q Consensus       232 ~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG  309 (339)
                      ...+.++++++.+.++-.+.+.++.+.+..|  ++.|.++||.+.|..+++.+.+.+   |.+|..++     ..+.++|
T Consensus       361 ~~t~~~l~RAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GGgaks~~~~Qi~ADvl---g~pV~~~~-----~e~~alG  432 (489)
T 2uyt_A          361 PESDAELARCIFDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNTLLNQLCADAC---GIRVIAGP-----VEASTLG  432 (489)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEESGGGGCHHHHHHHHHHH---TSEEEECC-----TTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCChhhhHHHHHHHHHHH---CCeeecCC-----ccHhHHH
Confidence            3568999999999999999999988876454  579999999999999999998887   78887654     2457788


Q ss_pred             HHHHHHHHh
Q psy9394         310 FAGAMRIEN  318 (339)
Q Consensus       310 ~a~~~~~~~  318 (339)
                      +++..++-.
T Consensus       433 aa~~A~~a~  441 (489)
T 2uyt_A          433 NIGIQLMTL  441 (489)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            866555443

>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*

Probab=94.82  E-value=2.1  Score=38.18  Aligned_cols=114  Identities=19%  Similarity=0.215  Sum_probs=64.0

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |++||||.+.+.+.+++++.+ ++++...+...       ... .+.......+.+...++.++++.      +..|+++
T Consensus         2 M~~lgiDiGgt~~~~~l~d~~-g~i~~~~~~~~-------~~~-~~~~~~~~~~~i~~~i~~~~~~~------~~~igi~   66 (299)
T 2e2o_A            2 MIIVGVDAGGTKTKAVAYDCE-GNFIGEGSSGP-------GNY-HNVGLTRAIENIKEAVKIAAKGE------ADVVGMG   66 (299)
T ss_dssp             CCEEEEEECSSCEEEEEECTT-SCEEEEEEESC-------CCH-HHHCHHHHHHHHHHHHHHHHTSC------CSEEEEE
T ss_pred             eEEEEEEeCCCcEEEEEEcCC-CCEEEEEeCCC-------CCc-ccCCHHHHHHHHHHHHHHHHhcC------CCEEEEE
Confidence            469999999999999999876 67887543321       000 00011233444556666665532      5667665


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEe
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVS  137 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~d  137 (339)
                      . ||. ..-+.-..+.+.+.. ++.|++-.+-..+.+++....     .+.+.+.+.
T Consensus        67 ~-~G~-~~~~~~~~l~~~l~~-~~~pv~v~ND~~aaa~~e~~~-----~~~v~l~~G  115 (299)
T 2e2o_A           67 V-AGL-DSKFDWENFTPLASL-IAPKVIIQHDGVIALFAETLG-----EPGVVVIAG  115 (299)
T ss_dssp             E-TTC-CSHHHHHHHHHHHTT-SSSEEEEEEHHHHHHHHHHTT-----SCEEEEEES
T ss_pred             c-CCC-CchhHHHHHHHHHHh-CCCCEEEeCcHHHHHhhccCC-----CCeEEEEec
Confidence            2 443 211111344556666 778887767666666554321     355555543

>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*

Probab=94.36  E-value=0.14  Score=50.45  Aligned_cols=79  Identities=14%  Similarity=0.057  Sum_probs=61.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHH
Q psy9394         234 EKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFA  311 (339)
Q Consensus       234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a  311 (339)
                      .+.++++++.+.++-.+.+.++.+.+ .+  ++.|.++||.+.|..+++.+.+.+   |.+|.++.    ...+.++|+|
T Consensus       405 ~~~~l~RAvlEgia~~~r~~~~~l~~-~g~~~~~i~~~GGga~s~~~~Qi~ADv~---g~pV~~~~----~~e~~alGaA  476 (538)
T 4bc3_A          405 PGDVEVRALIEGQFMAKRIHAEGLGY-RVMSKTKILATGGASHNREILQVLADVF---DAPVYVID----TANSACVGSA  476 (538)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTTC-CCCTTCCEEEEEGGGGCHHHHHHHHHHH---TSCEEECC----CTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCCeEEEEcchhcCHHHHHHHHHHh---CCceEecC----CCCchHHHHH
Confidence            56899999998888887777665432 33  368999999999999999998887   78888875    2346778888


Q ss_pred             HHHHHHhcC
Q psy9394         312 GAMRIENNY  320 (339)
Q Consensus       312 ~~~~~~~~~  320 (339)
                      ....+-.|.
T Consensus       477 ~lA~~a~G~  485 (538)
T 4bc3_A          477 YRAFHGLAG  485 (538)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHhCc
Confidence            877666654

>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10

Probab=94.31  E-value=2.9  Score=37.73  Aligned_cols=104  Identities=13%  Similarity=0.218  Sum_probs=60.6

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      +++||||.+.+.+.+++++.+ ++++.+.+...     +.    .  ......+.+...+++++.+.+    ++..|+++
T Consensus        24 ~~~lgiDiGgt~i~~~l~d~~-g~il~~~~~~~-----~~----~--~~~~~~~~i~~~i~~~~~~~~----~i~~igi~   87 (327)
T 2ap1_A           24 AMYYGFDIGGTKIALGVFDST-RRLQWEKRVPT-----PH----T--SYSAFLDAVCELVEEADQRFG----VKGSVGIG   87 (327)
T ss_dssp             CEEEEEEECSSEEEEEEEETT-CCEEEEEEEEC-----CC----S--CHHHHHHHHHHHHHHHHHHHT----SCCEEEEE
T ss_pred             ceEEEEEECCCEEEEEEEeCC-CCEEEEEEecC-----CC----C--CHHHHHHHHHHHHHHHHHhcC----CccEEEEE
Confidence            468999999999999999976 67887654321     00    0  012234445556666655432    46666654


Q ss_pred             CCCCCC---ch-h-------HHHHHHHHHHHHhcCCCEEeecchhHHhhhcc
Q psy9394          81 RGPGLP---GS-L-------LVGSSIACSIALSINKPVIGINHLEGHLLSPF  121 (339)
Q Consensus        81 ~gPG~~---t~-l-------r~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~  121 (339)
                      . ||..   ++ +       ..+..+.+.+...+++|++-.+--.+.+++-+
T Consensus        88 ~-pG~vd~~~g~v~~~~~~~~~~~~l~~~l~~~~~~pv~v~NDa~aaalgE~  138 (327)
T 2ap1_A           88 I-PGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRLDNDANCFALSEA  138 (327)
T ss_dssp             E-SSBSCCTTSCCBCTTCTTTTTSCHHHHHHHHHTSCEEEEEHHHHHHHHHH
T ss_pred             e-eeeEECCCCEEEccCCCccCCCChHHHHHHHHCCCEEEecHHHHHHHHHH
Confidence            2 3322   11 0       01122345666677899887777777666543

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*

Probab=94.25  E-value=0.18  Score=49.15  Aligned_cols=76  Identities=14%  Similarity=0.211  Sum_probs=53.6

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      ++||||.++..+.++|++.+ +++++...... +.+.+..|.... ....-.+.+...++++++++++++.+|..|+++
T Consensus         7 ~~lgIDiGtts~k~~l~d~~-G~il~~~~~~~-~~~~p~~g~~e~-d~~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis   82 (501)
T 3g25_A            7 YILSIDQGTTSSRAILFNQK-GEIAGVAQREF-KQYFPQSGWVEH-DANEIWTSVLAVMTEVINENDVRADQIAGIGIT   82 (501)
T ss_dssp             EEEEEEECSSEEEEEEECTT-SCEEEEEEEEC-CCBCSSTTCCEE-CHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEE
T ss_pred             EEEEEEeCccceEEEEEcCC-CCEEEEEEeec-ccccCCCCcEEE-CHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEE
Confidence            68999999999999999987 68887643322 111222232221 123456667788899999999988899999886

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}

Probab=94.08  E-value=0.16  Score=49.53  Aligned_cols=76  Identities=11%  Similarity=0.040  Sum_probs=53.8

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      ++||||.++..++++|++.+ +++++...... ....+..|.... ....-.+.+...++++++++++++.+|..|+++
T Consensus         8 ~~lgIDiGtts~k~~l~d~~-G~il~~~~~~~-~~~~p~~g~~e~-dp~~~~~~i~~~i~~~~~~~~~~~~~I~~Igis   83 (508)
T 3ifr_A            8 QVIGLDIGTTSTIAILVRLP-DTVVAVASRPT-TLSSPHPGWAEE-DPAQWWDNARAVLAELKTTAGESDWRPGGICVT   83 (508)
T ss_dssp             EEEEEEECSSEEEEEEEETT-TEEEEEEEEEC-CCBCSSTTCCEE-CHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEE
T ss_pred             EEEEEEecCcceEEEEECCC-CCEEEEEEEec-ceecCCCCceEE-CHHHHHHHHHHHHHHHHHhcCCChhheEEEEEE
Confidence            68999999999999999987 78887643321 122222333222 123456667788899998888888899999886

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O

Probab=93.81  E-value=0.22  Score=48.49  Aligned_cols=76  Identities=13%  Similarity=0.112  Sum_probs=53.3

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      ++||||.++..+.++|++.+ +++++...... ..+.+..|.... ....-.+.+...++++++++++++.+|..|+++
T Consensus         6 ~~lgIDiGtts~k~~l~d~~-G~il~~~~~~~-~~~~p~~g~~e~-dp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis   81 (506)
T 3h3n_X            6 YVMAIDQGTTSSRAIIFDRN-GKKIGSSQKEF-PQYFPKSGWVEH-NANEIWNSVQSVIAGAFIESGIRPEAIAGIGIT   81 (506)
T ss_dssp             EEEEEEECSSEEEEEEEETT-SCEEEEEEEEC-CCBCSSTTCCEE-CHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred             EEEEEEcCCCceEEEEECCC-CCEEEEEEEec-CccCCCCCcEEE-CHHHHHHHHHHHHHHHHHHcCCChhheEEEEee
Confidence            68999999999999999987 68887643321 111122232221 123456667788889999888888899999886

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=93.81  E-value=0.25  Score=47.99  Aligned_cols=77  Identities=12%  Similarity=0.057  Sum_probs=52.9

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      +++||||.++..++++|++.+ ++++....... +.+.+..|.... ....-.+.+...++++++++++++.+|..|+++
T Consensus         2 ~~~lgiDiGtT~~k~~l~d~~-g~i~~~~~~~~-~~~~p~~g~~e~-d~~~~~~~i~~~i~~~~~~~~~~~~~i~~Igis   78 (495)
T 2dpn_A            2 AFLLALDQGTTSSRAILFTLE-GRPVAVAKREF-RQLYPKPGWVEH-DPLEIWETTLWAAREVLRRAGAEAGEVLALGIT   78 (495)
T ss_dssp             -CEEEEEECSSEEEEEEECTT-SCEEEEEEEEC-CEECSSTTCCEE-CHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEE
T ss_pred             cEEEEEeeCCcceEEEEECCC-CCEEEEEEEee-ceecCCCCcEee-CHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEe
Confidence            148999999999999999877 67887654322 111122232221 123456667788889999888888889999886

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*

Probab=93.80  E-value=0.15  Score=50.29  Aligned_cols=77  Identities=6%  Similarity=0.199  Sum_probs=54.1

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      ++||||.++..+.++|++.+ +++++...... +.+.+..|.... ....-.+.+...++++++++++++.+|..|+++.
T Consensus         6 ~~lgIDiGtts~ka~l~d~~-G~il~~~~~~~-~~~~p~~g~~eq-dp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~   82 (554)
T 3l0q_A            6 YFIGVDVGTGSARAGVFDLQ-GRMVGQASREI-TMFKPKADFVEQ-SSENIWQAVCNAVRDAVNQADINPIQVKGLGFDA   82 (554)
T ss_dssp             EEEEEEECSSEEEEEEEETT-SCEEEEEEEEC-CCEEEETTEEEE-CHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEE
T ss_pred             EEEEEEECcccEEEEEECCC-CCEEEEEEEec-ccccCCCCcccc-CHHHHHHHHHHHHHHHHHHcCCCHhHEEEEEEcC
Confidence            68999999999999999977 78887643221 112222232221 2244566777888999998898888999998864

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}

Probab=93.67  E-value=0.22  Score=48.39  Aligned_cols=76  Identities=13%  Similarity=0.208  Sum_probs=52.7

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      ++||||.++..+.++|++.+ ++++....... +.+.+..|.... ....-.+.+...+++++++.++++.+|..|+++
T Consensus         4 ~~lgiDiGtt~~k~~l~d~~-g~~~~~~~~~~-~~~~p~~g~~e~-d~~~~~~~~~~~i~~~~~~~~~~~~~i~~Igis   79 (497)
T 2zf5_O            4 FVLSLDEGTTSARAIIFDRE-SNIHGIGQYEF-PQHYPRPGWVEH-NPEEIWDAQLRAIKDAIQSARIEPNQIAAIGVT   79 (497)
T ss_dssp             EEEEEEECSSEEEEEEECTT-CCEEEEEEEEC-CCBCCSTTCCEE-CHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred             EEEEEecCCchhEEEEECCC-CCEEEEEEecc-ceecCCCCcEEE-CHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEe
Confidence            68999999999999999876 67887654322 111222232221 123456667788888888888888889999886

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}

Probab=93.50  E-value=0.29  Score=47.87  Aligned_cols=76  Identities=17%  Similarity=0.222  Sum_probs=53.0

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      ++||||.++..+.++|++.+ +++++...... ....|..|.... ....-.+.+...++++++++++++.+|..|+++
T Consensus        27 ~~lgIDiGtts~k~~l~d~~-G~il~~~~~~~-~~~~p~~g~~e~-dp~~~~~~i~~~i~~~~~~~~~~~~~I~~Igis  102 (520)
T 4e1j_A           27 YILAIDQGTTSTRAIVFDGN-QKIAGVGQKEF-KQHFPKSGWVEH-DPEEIWQTVVSTVKEAIEKSGITANDIAAIGIT  102 (520)
T ss_dssp             EEEEEEECSSEEEEEEECTT-SCEEEEEEEEC-CCBCSSTTCCEE-CHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEE
T ss_pred             eEEEEEeCCcceEEEEECCC-CCEEEEEEEec-ccccCCCCcEEE-CHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEe
Confidence            68999999999999999977 67887643221 111122232221 123456667788999999999888899999876

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}

Probab=93.46  E-value=0.29  Score=47.63  Aligned_cols=76  Identities=16%  Similarity=0.158  Sum_probs=53.1

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      ++||||.++..+.++|++.+ ++++....... +.+.+..|.... ....-.+.+...+++++++.++++.+|..|+++
T Consensus         3 ~~lgiDiGtts~k~~l~d~~-G~i~~~~~~~~-~~~~p~~g~~e~-d~~~~~~~i~~~i~~~~~~~~~~~~~i~~Igis   78 (504)
T 2d4w_A            3 YVLAIDQGTTSSRAIVFDHS-GEIYSTGQLEH-DQIFPRAGWVEH-NPEQIWNNVREVVGLALTRGNLTHEDIAAVGIT   78 (504)
T ss_dssp             EEEEEEECSSEEEEEEECTT-SCEEEEEEEEC-CCBCSSTTCCEE-CHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred             EEEEEecCCcceEEEEECCC-CCEEEEEEEec-ceecCCCCceeE-CHHHHHHHHHHHHHHHHHHcCCCcccEEEEEEe
Confidence            68999999999999999977 67887654322 222222233221 123456667788889999888877889999876

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*

Probab=93.43  E-value=0.25  Score=48.24  Aligned_cols=76  Identities=14%  Similarity=0.151  Sum_probs=53.6

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      ++||||.++..+.++|++.+ +++++...... +.+.+..|.... ....-.+.+...+++++ ++++++.+|..|+++.
T Consensus         6 ~~lgIDiGtts~k~~l~d~~-G~il~~~~~~~-~~~~p~~g~~e~-dp~~~~~~~~~~i~~~~-~~~~~~~~I~~Igis~   81 (511)
T 3hz6_A            6 YIATFDIGTTEVKAALADRD-GGLHFQRSIAL-ETYGDGNGPVEQ-DAGDWYDAVQRIASSWW-QSGVDARRVSAIVLSG   81 (511)
T ss_dssp             EEEEEEECSSEEEEEEECTT-SCEEEEEEEEC-CCBSTTSSCCEE-CHHHHHHHHHHHHHHHH-TTTCCGGGEEEEEEEE
T ss_pred             EEEEEEeCCCceEEEEECCC-CCEEEEEEeec-ceecCCCCCEEE-CHHHHHHHHHHHHHHHH-hcCCChhHeEEEEEec
Confidence            78999999999999999977 68887653322 223333343322 22345666777888888 7888888999999873

>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5

Probab=93.24  E-value=1.2  Score=39.99  Aligned_cols=103  Identities=9%  Similarity=0.049  Sum_probs=64.1

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCc--CEEEE
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKI--DIIAY   79 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~di--d~ia~   79 (339)
                      ++||||.+...+.+++++.+ ++++.+.+.....         +........+.+...+++++++.++++.++  ..|++
T Consensus        12 ~~lGiDiGgT~i~~~l~d~~-G~il~~~~~~~~~---------~~~~~~~~~~~l~~~i~~~l~~~~~~~~~i~~~~igi   81 (305)
T 1zc6_A           12 YLIGVDGGGTGTRIRLHASD-GTPLAMAEGGASA---------LSQGIAKSWQAVLSTLEAAFQQAGLPAAPASACAIGL   81 (305)
T ss_dssp             EEEEEEECSSCEEEEEEETT-CCEEEEEEESCCC---------GGGCHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEEE
T ss_pred             EEEEEEcCccceEEEEEcCC-CCEEEEEeCCCCC---------cccCHHHHHHHHHHHHHHHHHhcCCChhhhccceEEE
Confidence            58999999999999999966 5788754321100         000123345667788899999888877777  56665


Q ss_pred             eCCCCCCchhHHHHHHHHHHHHhc--CCCEEeecchhHHhhhc
Q psy9394          80 TRGPGLPGSLLVGSSIACSIALSI--NKPVIGINHLEGHLLSP  120 (339)
Q Consensus        80 ~~gPG~~t~lr~g~~~ak~la~~~--~~p~~~v~h~~aHa~s~  120 (339)
                      + -||....-+ +.    .+...+  +.|+.-.+.-.+-+++.
T Consensus        82 g-~pG~v~~~~-~~----~l~~~~~~~~pv~v~NDa~aaa~ge  118 (305)
T 1zc6_A           82 G-LSGVHNRQW-AG----EFESQAPGFARLSLATDGYTTLLGA  118 (305)
T ss_dssp             E-ESCCCTTSH-HH----HHHHTCCCCSEEEEECHHHHHHHHH
T ss_pred             E-ecCCCchHH-HH----HHHHhCCCCceEEEECCHHHHHHhh
Confidence            4 255442111 11    144445  57887667666655543

>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6

Probab=93.07  E-value=0.48  Score=38.72  Aligned_cols=20  Identities=30%  Similarity=0.529  Sum_probs=18.6

Q ss_pred             CEEEEEecCCCceeEEEEEC
Q psy9394           1 MIILGIESSCDDSGLALYDT   20 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~   20 (339)
                      |+|||||-++..+..++++.
T Consensus         1 m~ILGIDPGl~~tG~gvi~~   20 (158)
T 1hjr_A            1 AIILGIDPGSRVTGYGVIRQ   20 (158)
T ss_dssp             CEEEEEECCSSEEEEEEEEE
T ss_pred             CEEEEEccCCCCeeEEEEEe
Confidence            89999999999999999974

>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A

Probab=92.98  E-value=0.31  Score=40.22  Aligned_cols=21  Identities=24%  Similarity=0.517  Sum_probs=19.6

Q ss_pred             CEEEEEecCCCceeEEEEECC
Q psy9394           1 MIILGIESSCDDSGLALYDTH   21 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~   21 (339)
                      |+|||||-++..+..++++.+
T Consensus         1 MrILGIDPGl~~tG~gvi~~~   21 (166)
T 4ep4_A            1 MVVAGIDPGITHLGLGVVAVE   21 (166)
T ss_dssp             CEEEEEECCSSEEEEEEEEEC
T ss_pred             CEEEEEccccCceEEEEEEec
Confidence            999999999999999999865

>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8

Probab=92.80  E-value=0.42  Score=35.75  Aligned_cols=87  Identities=8%  Similarity=-0.015  Sum_probs=53.2

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEE--EEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEE
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSH--VICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIA   78 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~--~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia   78 (339)
                      |.+||||-+...+++|+.+.. + .++.  +.+.+                 +..+.....+.+++++.     +++.|+
T Consensus         1 mriLglD~G~kriGvAvsd~~-~-~~A~pl~ti~~-----------------~~~~~~~~~l~~li~e~-----~v~~iV   56 (98)
T 1iv0_A            1 MRVGALDVGEARIGLAVGEEG-V-PLASGRGYLVR-----------------KTLEEDVEALLDFVRRE-----GLGKLV   56 (98)
T ss_dssp             CCEEEEEESSSEEEEEEECSC-C-SSCCCEEEEEC-----------------CCHHHHHHHHHHHHHHH-----TCCEEE
T ss_pred             CcEEEEEeCCCEEEEEEEeCC-C-CeeeeeEEEEc-----------------cCcHHHHHHHHHHHHHc-----CCCEEE
Confidence            889999999999999999876 3 4442  22211                 01122334555555542     578888


Q ss_pred             EeCCC----CCCc-hhHHHHHHHHHHHHhcCCCEEeecch
Q psy9394          79 YTRGP----GLPG-SLLVGSSIACSIALSINKPVIGINHL  113 (339)
Q Consensus        79 ~~~gP----G~~t-~lr~g~~~ak~la~~~~~p~~~v~h~  113 (339)
                      ++. |    |..+ ..+....|++.|... ++|++.+++.
T Consensus        57 vGl-P~~mdGt~~~~~~~~~~f~~~L~~~-~lpV~~~DER   94 (98)
T 1iv0_A           57 VGL-PLRTDLKESAQAGKVLPLVEALRAR-GVEVELWDER   94 (98)
T ss_dssp             EEC-CCCCCSSSCCCSSTTHHHHHHHHHT-TCEEEEECCS
T ss_pred             Eee-ccCCCCCcCHHHHHHHHHHHHHhcC-CCCEEEECCC
Confidence            862 2    2211 123334577777776 8888877653

>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8

Probab=92.77  E-value=0.24  Score=40.16  Aligned_cols=90  Identities=22%  Similarity=0.166  Sum_probs=51.9

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeE-EEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRS-HVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAY   79 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~   79 (339)
                      |.+||||-++..+++|+.+.. +.+.. ...+...+               ...+.....+.+++++.     +++.|++
T Consensus         3 mriLGiDpG~~riGvAv~d~~-g~~a~p~~~I~~~~---------------~r~~~~~~~l~~li~~~-----~~~~ivV   61 (150)
T 1vhx_A            3 LRILGLDLGTKTLGVALSDEM-GWTAQGIETIKINE---------------AEGDYGLSRLSELIKDY-----TIDKIVL   61 (150)
T ss_dssp             EEEEEEEECSSEEEEEEECTT-SSSEEEEEEEECBG---------------GGTBCCHHHHHHHHTTS-----EEEEEEE
T ss_pred             CEEEEEEccCCEEEEEEEECC-CCEEeeEEEEEcCC---------------cchHHHHHHHHHHHHHc-----CCCEEEE
Confidence            789999999999999999976 44433 22221100               00122334556665542     6788988


Q ss_pred             eCCCCC---CchhHHH--HHHHHHHHHhcCCCEEeecc
Q psy9394          80 TRGPGL---PGSLLVG--SSIACSIALSINKPVIGINH  112 (339)
Q Consensus        80 ~~gPG~---~t~lr~g--~~~ak~la~~~~~p~~~v~h  112 (339)
                      .. |=.   -++.+.+  ..|++.+....++|++.|++
T Consensus        62 Gl-P~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDE   98 (150)
T 1vhx_A           62 GF-PKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDE   98 (150)
T ss_dssp             EC-CCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECC
T ss_pred             ee-eecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecC
Confidence            71 311   1233332  34566666556888888444

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*

Probab=92.63  E-value=0.35  Score=47.00  Aligned_cols=76  Identities=17%  Similarity=0.151  Sum_probs=50.4

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhC--CCCCCCcCEEEE
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNS--NLELKKIDIIAY   79 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~--~i~~~did~ia~   79 (339)
                      ++||||.++..++++|++.+ ++++....... +...+..|.... ....-.+.+...++++++++  ++++.+|..|++
T Consensus         5 ~~lgIDiGtT~~k~~l~d~~-g~i~~~~~~~~-~~~~~~~g~~e~-d~~~~~~~i~~~i~~~~~~~~~~~~~~~i~~Igi   81 (503)
T 2w40_A            5 VILSIDQSTQSTKVFFYDEE-LNIVHSNNLNH-EQKCLKPGWYEH-DPIEIMTNLYNLMNEGIKVLKDKYTSVIIKCIGI   81 (503)
T ss_dssp             EEEEEEECSSEEEEEEEETT-CCEEEEEEEEC-CCBCCSTTCCEE-CHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             EEEEEEeCCcceEEEEECCC-CCEEEEEEEee-eeecCCCCcEEE-CHHHHHHHHHHHHHHHHHHhhcCCCccceEEEEE
Confidence            58999999999999999987 67887654322 111122232221 12344566677888888776  676678888887


Q ss_pred             e
Q psy9394          80 T   80 (339)
Q Consensus        80 ~   80 (339)
                      +
T Consensus        82 s   82 (503)
T 2w40_A           82 T   82 (503)
T ss_dssp             E
T ss_pred             c
Confidence            6

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=91.73  E-value=0.4  Score=44.90  Aligned_cols=53  Identities=19%  Similarity=0.137  Sum_probs=39.9

Q ss_pred             CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhc
Q psy9394         262 GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENN  319 (339)
Q Consensus       262 ~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~  319 (339)
                      .++.|+|+||.+....+.+.|.+.+.  +.++..++   --|.+++.|++.+..+..|
T Consensus       351 ~i~~VvLvGG~s~~p~l~~~l~~~~~--~~~v~~~~---~p~~ava~Gaa~~a~~l~~  403 (404)
T 3i33_A          351 QIQEIVLVGGSTRIPKIQKLLQDFFN--GKELNKSI---NPDEAVAYGAAVQAAILIG  403 (404)
T ss_dssp             GCCEEEEESGGGGCHHHHHHHHHHTT--TCCCBCSS---CTTTHHHHHHHHHHHHHC-
T ss_pred             hCCEEEEECCccccHHHHHHHHHHcC--CCCCCCCc---CHHHHHHHHHHHHHHHhcC
Confidence            35789999999999999999998762  33444443   3467899999988876654

>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*

Probab=91.55  E-value=0.38  Score=47.22  Aligned_cols=78  Identities=13%  Similarity=0.077  Sum_probs=48.7

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeeccccccc----CCccchH------HHHHHHHHHHHHHHHHHHhCCCCC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEY----GGVVPEL------AARTHIQTIIPLLSKLLKNSNLEL   71 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~----~G~~~~~------~~~~~~~~l~~~i~~~l~~~~i~~   71 (339)
                      ++||||.+|..++++|++.+ +++++...... +.+.|.    .|.....      ....-+......+.+.+.++++++
T Consensus        11 ~~lgID~GTts~Ka~l~d~~-G~vv~~~~~~~-~~~~p~~~~~~g~~e~~~g~~eqdp~~~w~~~~~~~~~~l~~~~~~~   88 (538)
T 4bc3_A           11 CCLGWDFSTQQVKVVAVDAE-LNVFYEESVHF-DRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDIILEKMKASGFDF   88 (538)
T ss_dssp             EEEEEEECSSEEEEEEEETT-CCEEEEEEEEH-HHHSGGGCCBTTBEECTTSSCEEEEHHHHHHHHHHHHHHHHHTTCCG
T ss_pred             EEEEEEEcCcCEEEEEECCC-CCEEEEEEEec-CCcCCcccCCCCeeecCCCccccCcHHHHHHHHHHHHHHHHHcCCCh
Confidence            68999999999999999987 78988654322 111121    3432100      011122233344445667788888


Q ss_pred             CCcCEEEEeC
Q psy9394          72 KKIDIIAYTR   81 (339)
Q Consensus        72 ~did~ia~~~   81 (339)
                      .+|.+|+++.
T Consensus        89 ~~I~aIgis~   98 (538)
T 4bc3_A           89 SQVLALSGAG   98 (538)
T ss_dssp             GGEEEEEEEE
T ss_pred             HHeEEEEecc
Confidence            8999999864

>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A

Probab=91.38  E-value=6.8  Score=34.17  Aligned_cols=41  Identities=20%  Similarity=0.152  Sum_probs=29.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhh
Q psy9394         234 EKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGA  274 (339)
Q Consensus       234 ~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~  274 (339)
                      ..+-+.+++.......+-.+++++.++.....|+++||-+.
T Consensus       182 T~~ai~sGi~~g~~g~i~~~i~~~~~~~~~~~vi~TGG~a~  222 (249)
T 3bex_A          182 TEENIRLGVVNGSVYALEGIIGRIKEVYGDLPVVLTGGQSK  222 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEESTTSG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCChH
Confidence            45566666677777777777777777764458999999653

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=91.07  E-value=0.68  Score=46.13  Aligned_cols=68  Identities=18%  Similarity=0.135  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHhC-----CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcCCCC
Q psy9394         250 LTFKCIAALKNTG-----INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNYKSE  323 (339)
Q Consensus       250 l~~~~~~~~~~~~-----~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~~~~  323 (339)
                      +...+++.++..+     ++.|+|+||.+....+.+.+.+.+   |.++..+   ..-|.+++.|++.+.....|...+
T Consensus       316 i~~~v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~f---g~~~~~~---~nPdeaVA~GAai~a~~l~~~~~~  388 (605)
T 4b9q_A          316 SIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF---GKEPRKD---VNPDEAVAIGAAVQGGVLTGDVKD  388 (605)
T ss_dssp             TTHHHHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHH---TSCCCSS---SCTTTHHHHHHHHHHHHHHTSSCS
T ss_pred             HHHHHHHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHh---ccCcCCC---cChhHHHHHhHHHHHHHhcCCCCc
Confidence            3444455555443     579999999999999999999987   4443333   235778999999998887776444

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*

Probab=90.95  E-value=0.96  Score=43.95  Aligned_cols=74  Identities=16%  Similarity=0.240  Sum_probs=50.2

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      ++||||.++..++++|++.+ +++++...... +.+.+..|.... ....-.+.+...+++++++.+   .+|..|+++.
T Consensus         5 ~~lgIDiGtts~K~~l~d~~-G~il~~~~~~~-~~~~p~~g~~e~-dp~~~~~~~~~~i~~~~~~~~---~~I~~Igis~   78 (504)
T 3ll3_A            5 YIIGMDVGTTATKGVLYDIN-GKAVASVSKGY-PLIQTKVGQAEE-DPKLIFDAVQEIIFDLTQKID---GKIAAISWSS   78 (504)
T ss_dssp             EEEEEEECSSEEEEEEEETT-SCEEEEEEEEC-CCBCSSTTCCEE-CHHHHHHHHHHHHHHHHHTCS---SEEEEEEEEE
T ss_pred             EEEEEEecCCceEEEEEcCC-CCEEEEEEeec-ceecCCCCcEEE-CHHHHHHHHHHHHHHHHHhCC---CCeEEEEEEC
Confidence            58999999999999999987 78887654322 222233343322 123455667778888888765   5788888764

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=90.09  E-value=1.2  Score=43.41  Aligned_cols=53  Identities=15%  Similarity=0.072  Sum_probs=41.3

Q ss_pred             CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         262 GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       262 ~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      .++.|+|+||.+....+.+.+.+.+   +.++..++   .-|.+++.|++.+.....|.
T Consensus       302 ~i~~VvLvGG~s~~p~v~~~l~~~f---~~~~~~~~---~p~~aVa~Gaa~~a~~l~~~  354 (509)
T 2v7y_A          302 DIDKVILVGGSTRIPAVQEAIKREL---GKEPHKGV---NPDEVVAIGAAIQGGVIAGE  354 (509)
T ss_dssp             GCSEEEEESGGGGCHHHHHHHHHHH---SSCCBCCS---CTTTHHHHHHHHHHHHHHTC
T ss_pred             HCcEEEEECCcccChHHHHHHHHHh---CCCcCcCC---CchhhhHhhHHHHHHHhcCC
Confidence            3679999999999999999999987   33433332   34778999999888777664

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=89.89  E-value=0.57  Score=43.48  Aligned_cols=60  Identities=18%  Similarity=0.102  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHh-----CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHH
Q psy9394         250 LTFKCIAALKNT-----GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMR  315 (339)
Q Consensus       250 l~~~~~~~~~~~-----~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~  315 (339)
                      +.+.+.+..++.     .++.|+|+||.++...+.+.+.+.+   +.++..++   .-|.+++.|++.+..
T Consensus       316 i~~~i~~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~---~~~v~~~~---~p~~ava~Gaa~~a~  380 (383)
T 1dkg_D          316 SIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF---GKEPRKDV---NPDEAVAIGAAVQGG  380 (383)
T ss_dssp             HHHHHHHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHH---SSCCBCSS---CTTTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHh---CCCCCCCc---ChHHHHHHHHHHHHH
Confidence            334444444443     3579999999999999999999987   34444443   336788999887653

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=89.74  E-value=1.8  Score=40.55  Aligned_cols=68  Identities=10%  Similarity=0.184  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHhC-----CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEcc---CCCCCChhHHHHHHHHHHHHH
Q psy9394         249 VLTFKCIAALKNTG-----INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYP---KKEFCTDNGAMIAFAGAMRIE  317 (339)
Q Consensus       249 ~l~~~~~~~~~~~~-----~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~---~~~~~~D~G~aiG~a~~~~~~  317 (339)
                      .+.+.+++..++.+     ++.|+|+||.+....+.+.+.+.+.. ...+.-|   ....-.|..++.|++.+....
T Consensus       326 ~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~-~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~  401 (409)
T 4gni_A          326 GFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPE-STRILAPSTDPSALNPSELQARGAALQASLI  401 (409)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCT-TSEEESTTTCTTCCCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCC-ccccccccccCCCcCHHHHHHHHHHHHhhhh
Confidence            34455555555543     57999999999999999999987631 1245444   223456788999998877543

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}

Probab=89.13  E-value=0.83  Score=44.58  Aligned_cols=66  Identities=9%  Similarity=0.094  Sum_probs=45.3

Q ss_pred             EEEEEecCCCceeEEEEE-CCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           2 IILGIESSCDDSGLALYD-THIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~-~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      ++||||.++..++++|++ ++ ++++++....       |.|...     +..+.+...+..++++++. ..+|..|+++
T Consensus         6 ~~lgIDiGtts~ka~l~d~~~-G~i~~~~~~~-------~~g~~e-----~d~~~~~~~i~~~l~~~~~-~~~I~~Igis   71 (515)
T 3i8b_A            6 LVAGVDTSTQSCKVRVTDAET-GELVRFGQAK-------HPNGTS-----VDPSYWWSAFQEAAEQAGG-LDDVSALAVG   71 (515)
T ss_dssp             EEEEEEECSSEEEEEEEETTT-CCEEEEEEEE-------CCSSSE-----ECTHHHHHHHHHHHHHTTC-STTEEEEEEE
T ss_pred             EEEEEEeccccEEEEEEECCC-CeEEEEEEEe-------CCCCce-----ECHHHHHHHHHHHHHhcCC-ccCceEEEEe
Confidence            789999999999999999 66 6788765432       212111     1123344566777777776 5789999886


Q ss_pred             C
Q psy9394          81 R   81 (339)
Q Consensus        81 ~   81 (339)
                      .
T Consensus        72 ~   72 (515)
T 3i8b_A           72 G   72 (515)
T ss_dssp             E
T ss_pred             C
Confidence            3

>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}

Probab=88.89  E-value=14  Score=34.06  Aligned_cols=100  Identities=11%  Similarity=0.082  Sum_probs=59.1

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEE-EeeecccccccCCccchHHHHHHHHHHHHHHHH---HHHhCCCCCCCcCEE
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHV-ICSQNLVHKEYGGVVPELAARTHIQTIIPLLSK---LLKNSNLELKKIDII   77 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~-~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~---~l~~~~i~~~did~i   77 (339)
                      +++|||.+.+.+.+++++ + ++++.+. ++..           +.   . ..+.+...+..   .+++. +. .++..|
T Consensus        10 ~~lgiDIGgt~i~~~l~d-~-G~il~~~~~~~~-----------~~---~-~~~~~l~~i~~~~~~i~~~-~~-~~i~gI   70 (366)
T 3mcp_A           10 IVMTLDAGGTNFVFSAIQ-G-GKEIADPVVLPA-----------CA---D-CLDKCLGNLVEGFKAIQAG-LP-EAPVAI   70 (366)
T ss_dssp             EEEEEECSSSEEEEEEEE-T-TEECSCCEEEEC-----------CT---T-CHHHHHHHHHHHHHHHHTT-CS-SCCCEE
T ss_pred             EEEEEEECcceEEEEEEE-C-CEEEEEEEEEEC-----------CC---C-CHHHHHHHHHHHHHHHHHH-hh-cCCeEE
Confidence            579999999999999999 6 5777644 3221           00   0 11223333333   44432 11 578888


Q ss_pred             EEeCCCCCCc-------------hhHHHHHHHHHHHHhcCCCEEeecchhHHhhhcc
Q psy9394          78 AYTRGPGLPG-------------SLLVGSSIACSIALSINKPVIGINHLEGHLLSPF  121 (339)
Q Consensus        78 a~~~gPG~~t-------------~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~  121 (339)
                      +++. ||...             +.+-++.+.+.|...+++|++-.+...|.|++-.
T Consensus        71 GIav-PG~Vd~~~G~i~~~~nlp~w~~~~~l~~~L~~~~g~PV~veNDanaaAlgE~  126 (366)
T 3mcp_A           71 SFAF-PGPADYQAGIIGDLPNFPSFRGGVALGPFLEDIFGIPVFINNDGSLFAYGEA  126 (366)
T ss_dssp             EEEC-CSSEETTTTEECCCTTCGGGTTCBCHHHHHHHHHCSCEEEECHHHHHHHHHH
T ss_pred             EEEe-cceEeCCCCEEEeCCCcccccCCCCHHHHHHHHHCCCEEEechhhHHHHHHH
Confidence            8763 44331             1110344556777788999887777777666543

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A

Probab=88.86  E-value=1.9  Score=41.51  Aligned_cols=73  Identities=10%  Similarity=0.082  Sum_probs=48.0

Q ss_pred             EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      +||||.++..+.++|++.+ ++++....... +.+.+..|.... ....-.+.+...+++++++.+  +.+|..|+++
T Consensus         2 ~lgiDiGtt~~k~~l~d~~-g~~l~~~~~~~-~~~~p~~g~~e~-d~~~~~~~i~~~i~~~~~~~~--~~~i~~Igis   74 (484)
T 2itm_A            2 YIGIDLGTSGVKVILLNEQ-GEVVAAQTEKL-TVSRPHPLWSEQ-DPEQWWQATDRAMKALGDQHS--LQDVKALGIA   74 (484)
T ss_dssp             EEEEEECSSEEEEEEECTT-SCEEEEEEEEC-CCBCSSTTCCEE-CHHHHHHHHHHHHHHHHHHSC--CTTCCEEEEE
T ss_pred             EEEEEecCcccEEEEECCC-CCEEEEEEecc-ccccCCCCCEeE-CHHHHHHHHHHHHHHHHHhCC--ccceEEEEEc
Confidence            6999999999999999876 67887653322 222232233221 123455667777888877643  4689999886

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=87.51  E-value=0.94  Score=41.32  Aligned_cols=46  Identities=11%  Similarity=0.060  Sum_probs=35.9

Q ss_pred             CeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHH
Q psy9394         264 NKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMR  315 (339)
Q Consensus       264 ~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~  315 (339)
                      ++|+|+||.++...+.+.|.+.+   +.++.+++   .-|.+++.|++.+..
T Consensus       279 ~~IvL~GG~s~~p~l~~~l~~~~---~~~v~~~~---~p~~ava~Gaa~~a~  324 (344)
T 1jce_A          279 RGIFLTGGGSLLRGLDTLLQKET---GISVIRSE---EPLTAVAKGAGMVLD  324 (344)
T ss_dssp             HCEEEESGGGCSBTHHHHHHHHH---SSCEEECS---STTTHHHHHHHHGGG
T ss_pred             CcEEEECccccchHHHHHHHHHH---CCCccccC---ChHHHHHHHHHHHHh
Confidence            57999999999999999999987   45566654   235678888877664

>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3

Probab=86.89  E-value=22  Score=33.86  Aligned_cols=75  Identities=9%  Similarity=0.040  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCC--eEEEEcchhhhH-HHHHHHHHHHHhC---CcEEEccCCCCCChhHHHHHH
Q psy9394         237 NIARGFLDAIIDVLTFKCIAALKNTGIN--KLVVVGGVGANK-QLRKKLNILKKQY---NYTVFYPKKEFCTDNGAMIAF  310 (339)
Q Consensus       237 diAa~~q~~l~~~l~~~~~~~~~~~~~~--~v~laGGVa~N~-~l~~~l~~~l~~~---~~~v~~~~~~~~~D~G~aiG~  310 (339)
                      .+|..+.+..++.+...+..+..+.+.+  .|++.|||+.+. .+.+.+.+.+.+.   ..++.+.   +++| |..+|+
T Consensus       365 ~va~~V~~RaA~lla~~ia~i~~~~~~~~~~V~i~Ggv~~~~~~~~~~l~~~l~~~~~~~~~i~~~---l~~d-gs~iGA  440 (451)
T 1bdg_A          365 YACEMVVKRAAYLAGAGIACILRRINRSEVTVGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLR---LSED-GSGKGA  440 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEEESHHHHHCTTHHHHHHHHHHHHSCTTCEEEEE---ECTT-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeCchhcCchhHHHHHHHHHHHHhCCCCcEEEE---ECCC-ccHHHH
Confidence            5777777777777777777777777777  677889997543 3555555555432   2234333   2455 555777


Q ss_pred             HHHHH
Q psy9394         311 AGAMR  315 (339)
Q Consensus       311 a~~~~  315 (339)
                      |.+.+
T Consensus       441 AllA~  445 (451)
T 1bdg_A          441 AAIAA  445 (451)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            77653

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=85.58  E-value=2  Score=43.45  Aligned_cols=52  Identities=12%  Similarity=0.071  Sum_probs=42.0

Q ss_pred             CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         263 INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       263 ~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      +..|+|+||.+.-..+.+.+.+.+   |.++..+.   --|.+++.|++.+.....+.
T Consensus       335 I~~VvLvGGssriP~v~~~l~~~f---g~~~~~~~---nPdeaVA~GAa~~a~~ls~~  386 (675)
T 3d2f_A          335 VDFVEIIGGTTRIPTLKQSISEAF---GKPLSTTL---NQDEAIAKGAAFICAIHSPT  386 (675)
T ss_dssp             CCEEEEESGGGGSHHHHHHHHHHH---TSCEECCS---CTTTHHHHHHHHHHHHTCSS
T ss_pred             CcEEEEECCCccChHHHHHHHHhc---CCCccccC---CcchHHHHHHHHHHHHhCCC
Confidence            679999999999999999999887   45554443   34788999999988777664

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}

Probab=84.55  E-value=0.93  Score=43.85  Aligned_cols=70  Identities=11%  Similarity=0.059  Sum_probs=47.6

Q ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHH-HHhCCcEEEccCCCCCChhHHHHHHHH
Q psy9394         236 ANIARGFLDA--IIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNIL-KKQYNYTVFYPKKEFCTDNGAMIAFAG  312 (339)
Q Consensus       236 ~diAa~~q~~--l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~-l~~~~~~v~~~~~~~~~D~G~aiG~a~  312 (339)
                      .++++++.+.  ++-.+.+.++.+.   ..+.|.++||.+.|..+++.+.+. +   |.+|.++..    ..+.++|+|.
T Consensus       362 ~~l~RA~lE~~Gia~~~r~~l~~~~---~~~~i~~~GG~a~s~~w~Qi~ADv~~---g~pV~~~~~----~e~~alGAA~  431 (482)
T 3h6e_A          362 DWFERRAAACLYAALVADTALDLIG---STGRILVEGRFAEADVFVRALASLRP---DCAVYTANA----HNDVSFGALR  431 (482)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHTT---CCSEEEEESGGGGCHHHHHHHHHHST---TSEEEEESS----CCCTTGGGHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhc---CCCeEEEeCCcccCHHHHHHHhhhcC---CCeEEEcCC----CchHHHHHHH
Confidence            4666666653  4444444444332   237899999999999999999887 7   788988862    2245567666


Q ss_pred             HHH
Q psy9394         313 AMR  315 (339)
Q Consensus       313 ~~~  315 (339)
                      ...
T Consensus       432 lA~  434 (482)
T 3h6e_A          432 LID  434 (482)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            653

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=83.49  E-value=2.3  Score=41.76  Aligned_cols=65  Identities=18%  Similarity=0.128  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHh-----CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHhcC
Q psy9394         251 TFKCIAALKNT-----GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIENNY  320 (339)
Q Consensus       251 ~~~~~~~~~~~-----~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~~~  320 (339)
                      .+.+++..+..     .++.|+|+||.+....+.+.+.+.+.  +.++..+.   --|.+++.|++.+.....|.
T Consensus       314 ~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~--~~~v~~~~---np~~aVA~Gaa~~a~~l~~~  383 (554)
T 1yuw_A          314 LDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFN--GKELNKSI---NPDEAVAYGAAVQAAILSGD  383 (554)
T ss_dssp             THHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTT--TCCCBCCS---CTTTHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHcCCChhhCcEEEEECCcccChHHHHHHHHHcC--CCccccCC---CchhHHHHHHHHHHHHhcCC
Confidence            33444444443     36799999999999999999988763  23333332   34678999999988777763

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}

Probab=81.86  E-value=3.3  Score=39.91  Aligned_cols=69  Identities=13%  Similarity=0.061  Sum_probs=41.1

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      ++||||.++..++++|++++ ++++...+.... .+ +..|....     ..+.+...+..++++.-  ..+|..|+++
T Consensus         7 ~~lgIDiGTts~Ka~l~d~~-G~i~~~~~~~~~-~~-~~~g~~eq-----dp~~~~~~~~~~i~~~~--~~~I~aIgis   75 (482)
T 3h6e_A            7 ATIVIDLGKTLSKVSLWDLD-GRMLDRQVRPSI-PL-EIDGIRRL-----DAPDTGRWLLDVLSRYA--DHPVTTIVPV   75 (482)
T ss_dssp             -CEEEEECSSEEEEEEECTT-SCEEEEEEEECC-CE-ESSSCEEC-----CHHHHHHHHHHHHHHTT--TSCCCEEEEE
T ss_pred             eEEEEEcCCCCeEEEEEECC-CcEEEEEEecCC-cc-cCCCceeE-----CHHHHHHHHHHHHHHHH--hcCCCEEEEe
Confidence            68999999999999999977 788876543321 11 22232221     12233344444444432  2578898876

>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A

Probab=81.59  E-value=3.9  Score=36.84  Aligned_cols=44  Identities=11%  Similarity=0.181  Sum_probs=27.4

Q ss_pred             CCCeEEEEcchhhhHHHHHHHHHHHHhCCc---EEEccCCCCCChhHHHHHHHHH
Q psy9394         262 GINKLVVVGGVGANKQLRKKLNILKKQYNY---TVFYPKKEFCTDNGAMIAFAGA  313 (339)
Q Consensus       262 ~~~~v~laGGVa~N~~l~~~l~~~l~~~~~---~v~~~~~~~~~D~G~aiG~a~~  313 (339)
                      .+..|+|+||.+.-  +.+.+.+.+   +.   ++.+++.   -+-+.++|++.+
T Consensus       272 ~~~~vvl~GGga~l--l~~~l~~~~---~~~~~~~~~~~~---P~~a~A~G~~~~  318 (320)
T 2zgy_A          272 GYTHVMVIGGGAEL--ICDAVKKHT---QIRDERFFKTNN---SQYDLVNGMYLI  318 (320)
T ss_dssp             CCCEEEEESTTHHH--HHHHHHHTS---CCCGGGEECCSC---GGGHHHHHHHHH
T ss_pred             CCCeEEEECChHHH--HHHHHHHHh---CCCCCceeeCCC---cHHHHHHHHHHh
Confidence            46799999999974  666665543   33   3555542   245566676654

>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10

Probab=81.56  E-value=25  Score=30.37  Aligned_cols=108  Identities=13%  Similarity=0.156  Sum_probs=60.6

Q ss_pred             CEEEEEecCCCceeEEEEEC-CCCceeEEE-EeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEE
Q psy9394           1 MIILGIESSCDDSGLALYDT-HIKNLRSHV-ICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIA   78 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~-~~~~i~~~~-~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia   78 (339)
                      |+++|||.+.+.+.+++++. + ++++.+. +...   . ..      .......+.+...++.++++.+. ...+..|+
T Consensus        12 ~~~lgidiggt~i~~~l~dl~~-g~i~~~~~~~~~---~-~~------~~~~~~~~~i~~~i~~~~~~~~~-~~~~~~ig   79 (267)
T 1woq_A           12 APLIGIDIGGTGIKGGIVDLKK-GKLLGERFRVPT---P-QP------ATPESVAEAVALVVAELSARPEA-PAAGSPVG   79 (267)
T ss_dssp             CCEEEEEECSSEEEEEEEETTT-TEEEEEEEEEEC---C-SS------CCHHHHHHHHHHHHHHHHTSTTC-CCTTCCEE
T ss_pred             CEEEEEEECCCEEEEEEEECCC-CeEEEEEEecCC---C-cc------CCHHHHHHHHHHHHHHHHHhccc-cCccceEE
Confidence            67899999999999999984 3 3666432 2211   0 00      00123345566677777664431 12334455


Q ss_pred             EeCCCCCCc--------hh---HHHHHHHHHHHHhcCCCEEeecchhHHhhhcc
Q psy9394          79 YTRGPGLPG--------SL---LVGSSIACSIALSINKPVIGINHLEGHLLSPF  121 (339)
Q Consensus        79 ~~~gPG~~t--------~l---r~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~  121 (339)
                      ++. ||...        .+   ..+..+.+.+....++|++-.+--.|.+++-+
T Consensus        80 i~~-pG~v~~g~v~~~~~l~~~w~~~~l~~~l~~~~~~pV~v~NDanaaalaE~  132 (267)
T 1woq_A           80 VTF-PGIIQHGVVHSAANVDKSWLNTDIDALLTARLGRPVEVINDADAAGLAEA  132 (267)
T ss_dssp             EEE-SSCEETTEECCCTTSCGGGTTCBHHHHHHHHHTSCEEEEEHHHHHHHHHH
T ss_pred             EEc-cceEcCCEEEeCCCCCCCCCCCCHHHHHHHHHCCCEEEeehhHHHHHHHH
Confidence            431 33320        11   11233456677778999888787777766643

>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A

Probab=81.54  E-value=9.4  Score=32.81  Aligned_cols=97  Identities=19%  Similarity=0.265  Sum_probs=52.5

Q ss_pred             EEEEEecCCCc-----eeEEEEECCCCceeEEEEeeecccccccC-CccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcC
Q psy9394           2 IILGIESSCDD-----SGLALYDTHIKNLRSHVICSQNLVHKEYG-GVVPELAARTHIQTIIPLLSKLLKNSNLELKKID   75 (339)
Q Consensus         2 ~iLgidts~~~-----~~~al~~~~~~~i~~~~~~~~~~~~~~~~-G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did   75 (339)
                      .|.|+|.|..+     +++++++-...+++... ....+..-||+ |.+       .++.++ .+-+++++...   ++|
T Consensus        38 ~VaGvDvsy~~~~~a~aa~Vvl~~~~~~~v~~~-~~~~~~~~PYIPG~L-------aFRE~P-~~l~al~~L~~---~Pd  105 (225)
T 2w36_A           38 YVAGVALSFPGKEEGLAVIVVLEYPSFKILEVV-SERGEITFPYIPGLL-------AFREGP-LFLKAWEKLRT---KPD  105 (225)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEETTTTEEEEEE-EEEEECCSCCCTTCT-------HHHHHH-HHHHHHTTCCS---CCS
T ss_pred             EEEEEEeeeeCCCcEEEEEEEEECCCCcEEEEE-EEEecccCCcccchH-------HHhhhH-HHHHHHHhcCC---CCC
Confidence            46799998752     23344553313565432 23344556776 433       234454 34455665544   789


Q ss_pred             EEEEeCCCCCCchhHHHHHHHHHHHHhcCCCEEeecch
Q psy9394          76 IIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHL  113 (339)
Q Consensus        76 ~ia~~~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~  113 (339)
                      .|.||. -|..=.-|.|+  |--+....++|.++|---
T Consensus       106 lllvDG-~Gi~HpR~~Gl--A~HlGv~l~~PtIGVAK~  140 (225)
T 2w36_A          106 VVVFDG-QGLAHPRKLGI--ASHMGLFIEIPTIGVAKS  140 (225)
T ss_dssp             EEEEES-CSSSSTTSCCH--HHHHHHHHTSCEEEEESS
T ss_pred             EEEEeC-eEEEcCCCCCc--hhhhhhhhCCCEEEEEec
Confidence            999983 23321123333  444556678999887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	339
d2i7na2	212	c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1	6e-43
d1huxa_	259	c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase comp	2e-22
d1okja1	106	c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Esch	1e-20
d2a6aa1	103	c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Th	8e-18
d2ewsa1	267	c.55.1.14 (A:1-267) Type II pantothenate kinase, C	4e-06

>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 212

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Pantothenate kinase 1, PANK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (368), Expect = 6e-43
 Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 14/196 (7%)

Query: 125 NSLTFPFIALLVS-GGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPE 183
             L  P+  LLV+ G    ++ V S  NY  +  T     G TF  +  +L  G     E
Sbjct: 21  YCLDNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTS--LGGGTFLGLCCLL-TGCETFEE 77

Query: 184 ISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNI---KLDSLKKEKANIAR 240
              ++  GD          +Y    ++   GL+ S +         K       K ++AR
Sbjct: 78  ALEMAAKGDSTNVDKLVKDIY--GGDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLAR 135

Query: 241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQY----NYTVFYP 296
             L  I + +         N  I+++V VG       +  KL      +         + 
Sbjct: 136 ATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFL 195

Query: 297 K-KEFCTDNGAMIAFA 311
           + + +    GA++   
Sbjct: 196 EHEGYFGAVGALLELF 211

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

 Score = 93.0 bits (230), Expect = 2e-22
 Identities = 42/310 (13%), Positives = 91/310 (29%), Gaps = 63/310 (20%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           +  LGI+     S   +               + +V K        +A  T        +
Sbjct: 2   IYTLGIDVGSTASKCIILKDG-----------KEIVAKSL------VAVGTGTSGPARSI 44

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP 120
           S++L+N++++ + +     T                             ++ L  H +  
Sbjct: 45  SEVLENAHMKKEDMAFTLATGYGRNS---------------LEGIADKQMSELSCHAMGA 89

Query: 121 FLSNNSLTFPFIALLVSGGHTQLIKV-NSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYP 179
                        + + G   ++I V N     F + +      G   D +A +L++   
Sbjct: 90  SFIWP---NVHTVIDIGGQDVKVIHVENGTMTNFQMNDKCAAGTGRFLDVMANILEVKVS 146

Query: 180 GGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANIA 239
              E+   S           R  + +    F+ S + + +              +K +I 
Sbjct: 147 DLAELGAKST---------KRVAISSTCTVFAESEVISQLSK----------GTDKIDII 187

Query: 240 RGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKE 299
            G   ++   +            +  +V+ GGV  N  +R     L++     +      
Sbjct: 188 AGIHRSVASRVIGLANRV---GIVKDVVMTGGVAQNYGVRGA---LEEGLGVEIKTS--P 239

Query: 300 FCTDNGAMIA 309
               NGA+ A
Sbjct: 240 LAQYNGALGA 249

>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]} Length = 106

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: YeaZ-like
domain: Hypothetical protein YeaZ
species: Escherichia coli [TaxId: 562]

 Score = 83.5 bits (206), Expect = 1e-20
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 18/122 (14%)

Query: 3   ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSK 62
           IL I+++ +   +AL++     + +H                 EL  R H Q I+P++  
Sbjct: 2   ILAIDTATEACSVALWND--GTVNAHF----------------ELCPREHTQRILPMVQD 43

Query: 63  LLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFL 122
           +L  S   L  I+ +AY RGPG    + +G  IA  +AL    P+IG++ L       + 
Sbjct: 44  ILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGAWR 103

Query: 123 SN 124
            N
Sbjct: 104 KN 105

>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: YeaZ-like
domain: Hypothetical protein TM0874
species: Thermotoga maritima [TaxId: 2336]

 Score = 75.6 bits (186), Expect = 8e-18
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 19/119 (15%)

Query: 1   MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLL 60
           M +L +++S     + L               ++L    Y         + H + +  ++
Sbjct: 1   MNVLALDTS-QRIRIGLRK------------GEDLFEISY------TGEKKHAEILPVVV 41

Query: 61  SKLLKNSNLELKKIDIIAYTRGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLS 119
            KLL   +L++K +D++    GPG    L VG +    +    + PV  +N  E    S
Sbjct: 42  KKLLDELDLKVKDLDVVGVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPLNSFEMTAKS 100

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} Length = 267

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

 Score = 45.4 bits (106), Expect = 4e-06
 Identities = 28/220 (12%), Positives = 59/220 (26%), Gaps = 6/220 (2%)

Query: 91  VGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIG 150
           +    A  IA +IN P       +       +            + +   T        G
Sbjct: 49  LTGGNAGVIAENINIPAQIFVEFDAASQGLGILLKEQGHDLADYIFANVGTGTSLHYFDG 108

Query: 151 NYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNF 210
                   +    G        +  +      +++ +++ GD N        +Y +    
Sbjct: 109 QSQRRVGGIGTGGGMIQGLGYLLSQITDYK--QLTDMAQHGDRNTIDLKVRHIYKDTE-- 164

Query: 211 SFSGLKTSVLNVIKNIKLDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVG 270
                  +  N    +         +N     +  + +V+T   I   +      +V +G
Sbjct: 165 PPIPGDLTAANFGHVLHHLDADFTPSNKLAAVIGVVGEVVTTMAITVAREFKTENIVYIG 224

Query: 271 G-VGANKQLRKKLNILKKQYNYTVFYPKK-EFCTDNGAMI 308
                N  LRK +           +Y +   F    GA+ 
Sbjct: 225 SSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALY 264

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	339
d1okja1	106	Hypothetical protein YeaZ {Escherichia coli [TaxId	99.89
d2a6aa1	103	Hypothetical protein TM0874 {Thermotoga maritima [	99.88
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	99.75
d2i7na2	212	Pantothenate kinase 1, PANK1 {Human (Homo sapiens)	99.74
d2ewsa1	267	Type II pantothenate kinase, CoaW {Staphylococcus	98.85
d2aa4a1	119	N-acetylmannosamine kinase NanK {Escherichia coli	97.04
d2p3ra2	247	Glycerol kinase {Escherichia coli [TaxId: 562]}	96.85
d1zc6a1	114	Probable N-acetylglucosamine kinase CV2896 {Chromo	96.79
d1r59o2	235	Glycerol kinase {Enterococcus casseliflavus [TaxId	96.67
d1z05a3	128	Transcriptional regulator VC2007 {Vibrio cholerae	96.58
d2ap1a2	117	Putative regulator protein YcfX {Salmonella typhim	96.45
d1z6ra2	129	Mlc protein {Escherichia coli [TaxId: 562]}	95.73
d2hoea3	128	N-acetylglucosamine kinase {Thermotoga maritima [T	95.67
d1saza1	172	butyrate kinase 2 {Thermotoga maritima [TaxId: 233	95.65
d2p3ra1	252	Glycerol kinase {Escherichia coli [TaxId: 562]}	95.37
d2ch5a2	117	N-acetylglucosamine kinase, NAGK {Human (Homo sapi	94.34
d2gupa1	114	Hypothetical protein SP2142 {Streptococcus pneumon	94.3
d1q18a1	110	Glucokinase Glk {Escherichia coli [TaxId: 562]}	94.19
d1dkgd2	198	Heat shock protein 70kDa, ATPase fragment {Escheri	93.48
d2gupa2	175	Hypothetical protein SP2142 {Streptococcus pneumon	93.35
d1bupa2	193	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	93.35
d1saza2	203	butyrate kinase 2 {Thermotoga maritima [TaxId: 233	91.94
d1xc3a1	118	Putative fructokinase YhdR {Bacillus subtilis [Tax	91.79
d2aa4a2	170	N-acetylmannosamine kinase NanK {Escherichia coli	91.69
d2ch5a1	227	N-acetylglucosamine kinase, NAGK {Human (Homo sapi	91.22
d2hoea2	169	N-acetylglucosamine kinase {Thermotoga maritima [T	90.9
d1hjra_	158	RuvC resolvase {Escherichia coli [TaxId: 562]}	90.75
d1r59o1	252	Glycerol kinase {Enterococcus casseliflavus [TaxId	90.19
d1iv0a_	98	Hypothetical protein, YqgF homologue {Thermus ther	90.17
d3bzka5	149	Transcriptional accessory factor Tex {Pseudomonas	88.44
d1woqa1	129	Inorganic polyphosphate/ATP-glucomannokinase PPGMK	88.27
d1vhxa_	140	Hypothetical protein YrrK (RuvX) {Bacillus subtili	87.0
d2d0oa2	241	Diol dehydratase-reactivating factor large subunit	86.65
d2ap1a1	186	Putative regulator protein YcfX {Salmonella typhim	84.22
d1z05a2	197	Transcriptional regulator VC2007 {Vibrio cholerae	84.13
d1xc3a2	176	Putative fructokinase YhdR {Bacillus subtilis [Tax	83.21
d1nu0a_	138	Hypothetical protein YqgF (RuvX) {Escherichia coli	82.85
d1zbsa2	107	Hypothetical protein PG1100 {Porphyromonas gingiva	82.62
d1z6ra3	196	Mlc protein {Escherichia coli [TaxId: 562]}	81.8
d1jcea2	196	Prokaryotic actin homolog MreB {Thermotoga maritim	81.73
d1mzja2	153	Priming beta-ketosynthase from the r1128 polyketid	80.58

>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: YeaZ-like
domain: Hypothetical protein YeaZ
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=7.2e-24  Score=164.12  Aligned_cols=105  Identities=30%  Similarity=0.525  Sum_probs=94.3

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      +||+||||++.+++||++++  +++.+....                .++|.+.+.++++++|++++++++|+|.|+|+.
T Consensus         1 kiLaIdTS~~~~sval~~~~--~i~~~~~~~----------------~~~h~~~l~~~i~~~l~~~~~~~~di~~i~v~~   62 (106)
T d1okja1           1 RILAIDTATEACSVALWNDG--TVNAHFELC----------------PREHTQRILPMVQDILTTSGTSLTDINALAYGR   62 (106)
T ss_dssp             EEEEEECSSSEEEEEEEETT--EEEEEEEEC----------------CSSTTTTHHHHHHHHHHHTTCCGGGCCEEEEEE
T ss_pred             CEEEEECCCcceEEEEEECC--EEEEEEEEc----------------cHHHHHHHHHHHHHHHHhcCCcceeeeEEEEee
Confidence            68999999999999999988  687654321                146888899999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccC
Q psy9394          82 GPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSN  124 (339)
Q Consensus        82 gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s  124 (339)
                      |||+|||+|+|+++||+++..+++|+++|+|+++||++++..+
T Consensus        63 GPGsfTglRig~s~akgla~~~~ip~~~v~sl~~la~~~~~k~  105 (106)
T d1okja1          63 GPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGAWRKN  105 (106)
T ss_dssp             ESSCHHHHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHS
T ss_pred             ccCccccchHHHHHHHHHHHHcCCCEEEeCHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999876543

>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: YeaZ-like
domain: Hypothetical protein TM0874
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=7.7e-23  Score=157.56  Aligned_cols=101  Identities=23%  Similarity=0.347  Sum_probs=89.2

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |++|+||||+ .+++++.+++  ++. +..++.               .++|.+.++++++++|++++++++|+|.|+|+
T Consensus         1 M~iLaidTS~-~~sval~~~~--~~~-~~~~~~---------------~~~hs~~l~~~i~~~l~~~~~~~~di~~i~v~   61 (103)
T d2a6aa1           1 MNVLALDTSQ-RIRIGLRKGE--DLF-EISYTG---------------EKKHAEILPVVVKKLLDELDLKVKDLDVVGVG   61 (103)
T ss_dssp             CEEEEEECSS-SEEEEEEETT--EEE-EEEEES---------------CGGGGGHHHHHHHHHHHHHTCCGGGCSEEEEE
T ss_pred             CcEEEEEcCc-ccEEEEEECC--EEE-EEeccC---------------chHHHHHHHHHHHHHHHHcCCCHHHhHHHhhc
Confidence            9999999985 6899998766  454 332222               25789999999999999999999999999999


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhc
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSP  120 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~  120 (339)
                      .|||+|||+|+|++++|+++..+++|+++|+|+++||.++
T Consensus        62 ~GPGsfTglRig~s~akgla~~~~ip~~gis~l~~lA~~~  101 (103)
T d2a6aa1          62 IGPGGLTGLRVGIATVVGLVSPYDIPVAPLNSFEMTAKSC  101 (103)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHGGGTCCEEEECHHHHHHHTC
T ss_pred             CCCCcchhHHHHHHHHHHHHHHcCCCEEEeCHHHHHHHhC
Confidence            9999999999999999999999999999999999999875

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=99.75  E-value=9.2e-17  Score=141.76  Aligned_cols=254  Identities=14%  Similarity=0.158  Sum_probs=171.2

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |++||||.+...+++||++++ ++++...+....                .+.+.+.+.+.+.+++.+....+.......
T Consensus         2 M~~lGIDiGGT~~k~~vvd~~-g~il~~~~~~t~----------------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~   64 (259)
T d1huxa_           2 IYTLGIDVGSTASKCIILKDG-KEIVAKSLVAVG----------------TGTSGPARSISEVLENAHMKKEDMAFTLAT   64 (259)
T ss_dssp             CEEEEEEECSSEEEEEEEETT-TEEEEEEEEECC----------------SSCCHHHHHHHHHHHHHTCCGGGCSEEEEE
T ss_pred             cEEEEEEeCcceEEEEEEcCC-CcEEEEEEecCC----------------CCHHHHHHHHHHHHHHcccccccceeeecc
Confidence            999999999999999999988 788876443221                112334456777788887776666666555


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhccccCCCCCCcEEEEEEeCCeeEEEEecCCcceEE--eeec
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLSNNSLTFPFIALLVSGGHTQLIKVNSIGNYFL--LGET  158 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~--~~~~  158 (339)
                      ..++..               ....|...++|..+|+..+.+..+.   ...+++..|+...++...+ +.+..  .+..
T Consensus        65 ~~~~~~---------------~~~~~~~~~~e~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~-g~~~~~~~~~~  125 (259)
T d1huxa_          65 GYGRNS---------------LEGIADKQMSELSCHAMGASFIWPN---VHTVIDIGGQDVKVIHVEN-GTMTNFQMNDK  125 (259)
T ss_dssp             STTTTT---------------TTTTCSEEECHHHHHHHHHHHHCTT---CCEEEEEETTEEEEEEEET-TEEEEEEEESS
T ss_pred             cccchh---------------hhhcCCcccccHHHHHHHHHHhCCC---CCEEEecCCCCcEEEEEeC-CcEEEEecCcc
Confidence            555543               2346778899999999988776542   3344555666666666554 33322  3446


Q ss_pred             cCCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCeeeecchHHHHHHHHHHhhccccccccHHHH
Q psy9394         159 LDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNFNFSFSGLKTSVLNVIKNIKLDSLKKEKANI  238 (339)
Q Consensus       159 ~~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~di  238 (339)
                      +....|.+++.....++++.++   ++.++..++.     +.++.. ..++|+    ++.+.....+.      .+.+++
T Consensus       126 ~~~g~g~~~~~~~~~~~~~~~e---~~~l~~~~~~-----~~~~~~-~~~~~~----~~~i~~~~~~~------~~~~~i  186 (259)
T d1huxa_         126 CAAGTGRFLDVMANILEVKVSD---LAELGAKSTK-----RVAISS-TCTVFA----ESEVISQLSKG------TDKIDI  186 (259)
T ss_dssp             CCTTSHHHHHHHHHHHTCCTTT---HHHHHTTCCS-----CCCCCC-CSHHHH----HHHHHHHHHTT------CCHHHH
T ss_pred             cCCchHHHHHHHHHHcCCCHHH---HHHHHhcCCC-----CcccCC-Cccchh----hhHHhHHhhCC------CcHHHH
Confidence            6778899999999999988763   4455555443     112111 111232    44455555433      567788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHHh
Q psy9394         239 ARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIEN  318 (339)
Q Consensus       239 Aa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~~  318 (339)
                      +......+...+...+.+.   ...+.|+++|||++|..+++.+.+.+   +.++++|+  .++|+| ++|+|.+++-+.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~---~~~~~Iv~gGGv~~~~~~~~~l~~~l---~~~i~~~~--~~~~ag-aiGAA~lA~~~~  257 (259)
T d1huxa_         187 IAGIHRSVASRVIGLANRV---GIVKDVVMTGGVAQNYGVRGALEEGL---GVEIKTSP--LAQYNG-ALGAALYAYKKA  257 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTT---CCCSSEEEESGGGGCHHHHHHHHHHH---CSCEECCG--GGGGHH-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhc---cCCCcEEEEccccccHHHHHHHHHHH---CCCEEcCC--CccHHH-HHHHHHHHHHHh
Confidence            8877777766666555433   35678999999999999999999887   56788887  567777 699998886543

>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Pantothenate kinase 1, PANK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.5e-19  Score=152.31  Aligned_cols=175  Identities=19%  Similarity=0.201  Sum_probs=133.4

Q ss_pred             CcEEEEEEeCCeeEEEEecCCcceEEeeeccCCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCccccCCCe
Q psy9394         129 FPFIALLVSGGHTQLIKVNSIGNYFLLGETLDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRPMLYTNNF  208 (339)
Q Consensus       129 ~~~~~l~~dGg~~~~~~~~~~~~~~~~~~~~~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~l~~~~~~  208 (339)
                      +|++.+.+.+| +.++.+++.++++.++.+.  ..|..||.++++| +.++++++++.||..|++..+++|++.  ..++
T Consensus        27 fP~llv~iGsG-tsii~v~~~~~~~~iggT~--~gGgtf~gla~lL-lg~~~~~eI~klA~~G~~~~~dl~~~d--i~~~  100 (212)
T d2i7na2          27 YPMLLVNMGSG-VSILAVYSKDNYKRVTGTS--LGGGTFLGLCCLL-TGCETFEEALEMAAKGDSTNVDKLVKD--IYGG  100 (212)
T ss_dssp             CSEEEEEESSS-EEEEEEEETTEEEEEEEES--CSHHHHHHHHHHH-HCCCSHHHHHHHHHHCCGGGTSEEHHH--HHSS
T ss_pred             CCEEEEECCCC-eEEEEEecCCceEEecCCc--ccHHHHHHHHHHh-cCCCCHHHHHHHHhcCCccccCccCCC--cCCC
Confidence            67887776666 6788888778999998875  7899999999999 889999999999999997666555442  2245


Q ss_pred             eeecchHHHHHHHHH-Hhhc--cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHH
Q psy9394         209 NFSFSGLKTSVLNVI-KNIK--LDSLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNIL  285 (339)
Q Consensus       209 ~~~~~~l~~~~~~~~-~~~~--~~~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~  285 (339)
                      +++++++++.+.... .+..  .......++|||+++|+.+.+.|.+++.++.+.+++++|+++|||++|+.+++++.+.
T Consensus       101 ~~s~sgL~t~~~a~~fgk~~~~~~~~~~~~~DiaaS~q~~v~~~l~~~a~~aa~~~~~k~iv~~Ggv~aN~~lr~~l~~~  180 (212)
T d2i7na2         101 DYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAY  180 (212)
T ss_dssp             CBGGGTBCTTSEEETTTTTTSHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEESGGGCSSSHHHHHHHH
T ss_pred             CCCcccCCHHHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHhhCHHHHHHHHHH
Confidence            677777765432211 1100  0113457899999999999999999999999999999999999999999999988664


Q ss_pred             H----HhCCcEEEccCC-CCCChhHHHHH
Q psy9394         286 K----KQYNYTVFYPKK-EFCTDNGAMIA  309 (339)
Q Consensus       286 l----~~~~~~v~~~~~-~~~~D~G~aiG  309 (339)
                      .    ...++++++|+. .++++.|+++.
T Consensus       181 ~~~~~~~~~i~~~Fp~~~~y~galGA~l~  209 (212)
T d2i7na2         181 AMDFWSKGQLKALFLEHEGYFGAVGALLE  209 (212)
T ss_dssp             HHHHHTTTSCCEEEETTTTCHHHHHHHHH
T ss_pred             HHHHHhhCCceEEecCChhhhHHHHHHHH
Confidence            3    335788888863 46666555543

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.85  E-value=3.4e-07  Score=79.08  Aligned_cols=252  Identities=13%  Similarity=0.115  Sum_probs=142.5

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |+ +|||.+...+.++|++++ ++++....                   .++.+.    +.+.+++     .+++.|.++
T Consensus         1 Mk-iGIDiGGT~ik~~lvd~~-g~i~~~~~-------------------~~t~~~----i~~~i~~-----~~~~~i~i~   50 (267)
T d2ewsa1           1 MK-VGIDAGGTLIKIVQEQDN-QRTFKTEL-------------------TKNIDQ----VVEWLNQ-----QQIEKLCLT   50 (267)
T ss_dssp             CE-EEEEECSSEEEEEEECSS-CEEEEEEE-------------------GGGHHH----HHHHHHT-----SCCSEEEEE
T ss_pred             CE-EEEEEChhhEEEEEEeCC-CcEEEEEe-------------------cccHHH----HHHHHHH-----hhhhheeee
Confidence            88 699999999999999988 65653321                   011122    2223332     367788776


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcCCCEEeecchhHHhhhcccc---CCCCCCcEEEEEEeCCeeEEEEecCCcceEEeee
Q psy9394          81 RGPGLPGSLLVGSSIACSIALSINKPVIGINHLEGHLLSPFLS---NNSLTFPFIALLVSGGHTQLIKVNSIGNYFLLGE  157 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s~~~~---s~~~~~~~~~l~~dGg~~~~~~~~~~~~~~~~~~  157 (339)
                       +||.           .........+...++....+.......   .+....+. ....++....+..... ..+.+.. 
T Consensus        51 -g~g~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~-  115 (267)
T d2ewsa1          51 -GGNA-----------GVIAENINIPAQIFVEFDAASQGLGILLKEQGHDLADY-IFANVGTGTSLHYFDG-QSQRRVG-  115 (267)
T ss_dssp             -STTH-----------HHHHTTSSSCCEECCHHHHHHHHHHHHHHHTTCCCSCE-EEEEESSSEEEEEECS-SCEEEEE-
T ss_pred             -cccc-----------cccchheeccccccchHHHHHHHhhhhhhhcCCcccch-HHHhcccceEEecccC-ceeEeec-
Confidence             5652           223334445555566666665443221   11112332 3444555444444333 2333332 


Q ss_pred             ccCCcchhhhHHHHhHcCCCCCcHHHHHhccccCCCCcccCCCc-ccc------CCCe-eeecchHHHHHHHHHHhhccc
Q psy9394         158 TLDDAAGDTFDKIAKMLDLGYPGGPEISLISEFGDPNIYKFPRP-MLY------TNNF-NFSFSGLKTSVLNVIKNIKLD  229 (339)
Q Consensus       158 ~~~~s~G~~~d~va~~LG~~~~gg~~le~lA~~g~~~~~~~~~~-l~~------~~~~-~~~~~~l~~~~~~~~~~~~~~  229 (339)
                      ......|.+++.....++....++  +..++..++....+.... ...      ...+ ...+...          ....
T Consensus       116 g~g~G~g~~~~~~~~~~~~~~~ge--~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~  183 (267)
T d2ewsa1         116 GIGTGGGMIQGLGYLLSQITDYKQ--LTDMAQHGDRNTIDLKVRHIYKDTEPPIPGDLTAANFGHV----------LHHL  183 (267)
T ss_dssp             EESCSHHHHHHHHHHHHCCCCHHH--HHHHHTTCCCTTTCEETTTC-------CCTTSEEETTTTG----------GGCT
T ss_pred             ccccccceehhhHHHhcCCCChhH--HHHhhccCCCcccccccchhhcCCCccchhhhhhhhhcch----------hhhh
Confidence            223567888988888777654332  222333333211100000 000      0000 0000000          0001


Q ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchh-hhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHH
Q psy9394         230 SLKKEKANIARGFLDAIIDVLTFKCIAALKNTGINKLVVVGGVG-ANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMI  308 (339)
Q Consensus       230 ~~~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa-~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~ai  308 (339)
                      ....+..++++++++.+.+.+...+..+...+..++|++.||+. .|..+++.+.+.++..+.++++|+  . ++..-++
T Consensus       184 ~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~--~-~~~aGai  260 (267)
T d2ewsa1         184 DADFTPSNKLAAVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVE--N-GAFSGAI  260 (267)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECT--T-GGGHHHH
T ss_pred             hhhcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECC--C-ccHHHHH
Confidence            12356889999999999999999988888888889999999965 689999999999988888988887  3 3445556


Q ss_pred             HHHH
Q psy9394         309 AFAG  312 (339)
Q Consensus       309 G~a~  312 (339)
                      |++.
T Consensus       261 GA~~  264 (267)
T d2ewsa1         261 GALY  264 (267)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.0006  Score=51.35  Aligned_cols=100  Identities=18%  Similarity=0.207  Sum_probs=65.1

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |++||||.+.....+++++.+ ++++...++..   ..           .+..+.+...+..++++..   .++..|+++
T Consensus         1 M~~lgiDiGgT~i~~~l~d~~-G~i~~~~~~~~---~~-----------~~~~~~~~~~i~~~i~~~~---~~~~~igI~   62 (119)
T d2aa4a1           1 MTTLAIDIGGTKLAAALIGAD-GQIRDRRELPT---PA-----------SQTPEALRDALSALVSPLQ---AHAQRVAIA   62 (119)
T ss_dssp             CCEEEEEECSSEEEEEEECTT-CCEEEEEEEEC---CS-----------SCCHHHHHHHHHHHHTTTG---GGCSEEEEE
T ss_pred             CeEEEEEeCcCEEEEEEEcCC-CCEEEeEEEec---cc-----------cCcHHHHHHHHHHHHHHhh---ccCceEEEE
Confidence            999999999999999999877 68887654321   00           0112345556666666543   367888876


Q ss_pred             CCCCCCc----------hh--HHHHHHHHHHHHhcCCCEEeecchhHHhhh
Q psy9394          81 RGPGLPG----------SL--LVGSSIACSIALSINKPVIGINHLEGHLLS  119 (339)
Q Consensus        81 ~gPG~~t----------~l--r~g~~~ak~la~~~~~p~~~v~h~~aHa~s  119 (339)
                       -||...          .+  .-++.+++.|....++|++-.+--.|.|++
T Consensus        63 -~pG~v~~~~~~~~~~~~l~~w~~~~l~~~l~~~~~~pv~i~NDanaaalg  112 (119)
T d2aa4a1          63 -STGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLTNLPTIAINDAQAAAWA  112 (119)
T ss_dssp             -ESSEEETTEEECSSGGGGGGGTTCCHHHHHHHHHCSCEEEEEHHHHHHHH
T ss_pred             -eeeeEcCCCcEEEccCccccccCCCHHHHHHHHhCCCEEEEehHHHHHHH
Confidence             355431          11  123445677888889998877776666654

>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

Probab=96.79  E-value=0.0035  Score=46.47  Aligned_cols=74  Identities=11%  Similarity=0.165  Sum_probs=53.0

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      ++||||.+...+.++|++.+ ++++.+.....        +. ++....+..+.+...+++++++++++..++..+++..
T Consensus         5 y~lGID~GGT~tk~~l~d~~-G~il~~~~~~~--------~~-~~~~~~~~~~~i~~~i~~~~~~ag~~~~~~~~~~~~~   74 (114)
T d1zc6a1           5 YLIGVDGGGTGTRIRLHASD-GTPLAMAEGGA--------SA-LSQGIAKSWQAVLSTLEAAFQQAGLPAAPASACAIGL   74 (114)
T ss_dssp             EEEEEEECSSCEEEEEEETT-CCEEEEEEESC--------CC-GGGCHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEEE
T ss_pred             EEEEEEcCcceEEEEEEcCC-CCEEEEEEccC--------CC-cccCHHHHHHHHHHHHHHHHHHcCCChhhhceeEEEE
Confidence            68999999999999999887 77887543210        11 1122345667788899999999999999887655543


Q ss_pred             C-CCC
Q psy9394          82 G-PGL   85 (339)
Q Consensus        82 g-PG~   85 (339)
                      | ||.
T Consensus        75 g~aG~   79 (114)
T d1zc6a1          75 GLSGV   79 (114)
T ss_dssp             EESCC
T ss_pred             EecCC
Confidence            3 443

>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

Probab=96.67  E-value=0.005  Score=51.99  Aligned_cols=85  Identities=18%  Similarity=0.105  Sum_probs=69.3

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHH
Q psy9394         232 KKEKANIARGFLDAIIDVLTFKCIAALKNTG--INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIA  309 (339)
Q Consensus       232 ~~~~~diAa~~q~~l~~~l~~~~~~~~~~~~--~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG  309 (339)
                      ...+.++++++.+.++-.+.+.++.+.+..+  ++.|.++||.+.|..+++.+.+.+   +.+|.++..    +.+.++|
T Consensus       115 ~~~~~~l~rAvlEgiaf~~~~~~e~~~~~~g~~~~~i~~~GG~s~s~~~~Qi~Advl---g~~v~~~~~----~e~~alG  187 (235)
T d1r59o2         115 GTTKEDFVRATLQAVAYQSKDVIDTMKKDSGIDIPLLKVDGGAAKNDLLMQFQADIL---DIDVQRAAN----LETTALG  187 (235)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSEEEEEESTTSCHHHHHHHHHHH---SSEEEEESC----CCTTTHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEecCcchhCHHHHhhhhhcc---ceeeeeccc----cchHHHH
Confidence            3578999999999999999999888877655  578999999999999999999987   778888762    2356778


Q ss_pred             HHHHHHHHhcCCCC
Q psy9394         310 FAGAMRIENNYKSE  323 (339)
Q Consensus       310 ~a~~~~~~~~~~~~  323 (339)
                      +|....+..|...+
T Consensus       188 aA~la~~~~G~~~~  201 (235)
T d1r59o2         188 AAYLAGLAVGFWKD  201 (235)
T ss_dssp             HHHHHHHHHTSSSS
T ss_pred             HHHHHHHHcCCCCC
Confidence            88887777776554

>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Transcriptional regulator VC2007
species: Vibrio cholerae [TaxId: 666]

Probab=96.58  E-value=0.0035  Score=47.27  Aligned_cols=104  Identities=16%  Similarity=0.171  Sum_probs=69.3

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      .+||||.+.+..++++++-. ++++.+.+...           +........+.+...+++++++.+++..++-.|+++ 
T Consensus         5 ~~lgi~ig~~~i~~~l~d~~-G~il~~~~~~~-----------~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gIgi~-   71 (128)
T d1z05a3           5 QFLSMRLGRGYLTIALHELG-GEVLIDTKIDI-----------HEIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAIT-   71 (128)
T ss_dssp             EEEEEEEETTEEEEEEEETT-SCEEEEEEEEC-----------CCCBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEE-
T ss_pred             EEEEEEECCCEEEEEEEcCC-CCEEEEEEecc-----------ccCCHHHHHHHHHHHHHHHHHHcccccccceEEEee-
Confidence            47999999999999999987 78887654432           111123445667789999999999987778777765 


Q ss_pred             CCCCCch----------h-HHHHHHHHHHHHhcCCCEEeecchhHHhh
Q psy9394          82 GPGLPGS----------L-LVGSSIACSIALSINKPVIGINHLEGHLL  118 (339)
Q Consensus        82 gPG~~t~----------l-r~g~~~ak~la~~~~~p~~~v~h~~aHa~  118 (339)
                      -||....          + ..+..+.+.|....++|++-.+.-.|-|.
T Consensus        72 ~pG~vd~~~~~~~~~~~~~~~~~~l~~~l~~~~~~PV~l~NDana~a~  119 (128)
T d1z05a3          72 LPGLVNSEQGIVLQMPHYNVKNLALGPEIYKATGLPVFVANDTRAWAL  119 (128)
T ss_dssp             ESSEEETTTTEEEECSSSBCSSBCHHHHHHHHHCSCEEEEEHHHHHHH
T ss_pred             eeeeeeccceeeeccccCCCCCcchHHHHHHhcCCCEEEEehHHHHHH
Confidence            2443210          0 01123456677778899876665544443

>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative regulator protein YcfX
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.45  E-value=0.0081  Score=44.45  Aligned_cols=98  Identities=11%  Similarity=0.181  Sum_probs=57.8

Q ss_pred             EEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeCC
Q psy9394           3 ILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTRG   82 (339)
Q Consensus         3 iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~g   82 (339)
                      +||||.+...+.+++++.+ ++++...++..     +.      .......+.+...++++..+.+    .+..|+++ -
T Consensus         2 yiGiDiGgT~i~~~l~d~~-g~i~~~~~~~t-----~~------~~~~~~~~~i~~~i~~~~~~~~----~~~~igi~-~   64 (117)
T d2ap1a2           2 YYGFDIGGTKIALGVFDST-RRLQWEKRVPT-----PH------TSYSAFLDAVCELVEEADQRFG----VKGSVGIG-I   64 (117)
T ss_dssp             EEEEEECSSEEEEEEEETT-CCEEEEEEEEC-----CC------SCHHHHHHHHHHHHHHHHHHHT----SCCEEEEE-E
T ss_pred             EEEEEECcceEEEEEEeCC-CCEEEEEEEee-----cc------cCHHHHHHHHHHHHHHHHhhcC----cceeEEEe-c
Confidence            4999999999999999987 78887665432     11      1112334445566666666544    45667665 3


Q ss_pred             CCCCc---hh--------HHHHHHHHHHHHhcCCCEEeecchhHHh
Q psy9394          83 PGLPG---SL--------LVGSSIACSIALSINKPVIGINHLEGHL  117 (339)
Q Consensus        83 PG~~t---~l--------r~g~~~ak~la~~~~~p~~~v~h~~aHa  117 (339)
                      ||...   +.        .-+..+.+.|....++|++--+--.|.|
T Consensus        65 pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~~pv~l~NDan~aa  110 (117)
T d2ap1a2          65 PGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRLDNDANCFA  110 (117)
T ss_dssp             SSBSCCTTSCCBCTTCTTTTTSCHHHHHHHHHTSCEEEEEHHHHHH
T ss_pred             CCccccccceeeccCccccCCCcHHHHHHHHhCCCEEEEeHHHhhH
Confidence            45431   10        0112245667777889986554433333

>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Mlc protein
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.0072  Score=45.56  Aligned_cols=105  Identities=16%  Similarity=0.169  Sum_probs=70.1

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      .+||||.+.+..++++++-. ++++.+.....   ..+    .+    ....+.+...++.++++.+.+..++-.|+++ 
T Consensus         5 ~~l~i~i~~~~i~~~l~Dl~-G~~l~~~~~~~---~~~----~~----~~~~~~l~~~i~~~l~~~~~~~~~i~gIgi~-   71 (129)
T d1z6ra2           5 HYLSLRISRGEIFLALRDLS-SKLVVEESQEL---ALK----DD----LPLLDRIISHIDQFFIRHQKKLERLTSIAIT-   71 (129)
T ss_dssp             EEEEEEEETTEEEEEEEETT-CCEEEEEEEEC---CSS----CS----SCHHHHHHHHHHHHHHHTGGGCCCEEEEEEE-
T ss_pred             EEEEEEECCCEEEEEEEcCC-CCEEEEEEeec---ccc----ch----hHHHHHHHHHHHHHHHhcCcccccceeEEEe-
Confidence            47999999999999999987 78987654321   111    01    1234667788999999988877788888776 


Q ss_pred             CCCCCc---hh---------HHHHHHHHHHHHhcCCCEEeecchhHHhhh
Q psy9394          82 GPGLPG---SL---------LVGSSIACSIALSINKPVIGINHLEGHLLS  119 (339)
Q Consensus        82 gPG~~t---~l---------r~g~~~ak~la~~~~~p~~~v~h~~aHa~s  119 (339)
                      -||.+-   +.         .-++.+.+.|....++|++-.+.-.|-+++
T Consensus        72 ~pG~v~~~~~~~~~~~~~~~w~~~~l~~~l~~~~~~pV~~~NDa~a~ala  121 (129)
T d1z6ra2          72 LPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMA  121 (129)
T ss_dssp             ESSEEETTTTEEEECTTCTTCSSBCHHHHHHHHHSSCEEEEEHHHHHHHH
T ss_pred             eeeeeeecccceeccCcchhccCcchHHHHHHhcCCCEEEEehHHHHHHH
Confidence            355431   10         012234566777788998776666665544

>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.67  E-value=0.021  Score=42.71  Aligned_cols=105  Identities=15%  Similarity=0.147  Sum_probs=67.9

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      +++|||.+.+...+++++.. ++++.+.......   .       .......+.+...++.+++..+....++..|+++.
T Consensus         5 ~~igidig~~~i~~~l~d~~-G~il~~~~~~~~~---~-------~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gigi~~   73 (128)
T d2hoea3           5 YVLGIEVTRDEIAACLIDAS-MNILAHEAHPLPS---Q-------SDREETLNVMYRIIDRAKDMMEKLGSKLSALTVAA   73 (128)
T ss_dssp             EEEEEEECSSEEEEEEEETT-CCEEEEEEEECCS---S-------CCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEcCC-CCEEEEEEEeccc---C-------CCHHHHHHHHHHHHHHHHHHhccccCceEEEecce
Confidence            68999999999999999987 7898876543210   0       01123345556777888877777778898888762


Q ss_pred             CCCCCc------------hhHHHHHHHHHHHHhcCCCEEeecchhHHhhh
Q psy9394          82 GPGLPG------------SLLVGSSIACSIALSINKPVIGINHLEGHLLS  119 (339)
Q Consensus        82 gPG~~t------------~lr~g~~~ak~la~~~~~p~~~v~h~~aHa~s  119 (339)
                       ||...            + .-.+.+.+.+...+++|++--+.-.|.|++
T Consensus        74 -pG~vd~~~g~i~~~~~l~-w~~~~l~~~l~~~~~~pv~i~NDa~~~ala  121 (128)
T d2hoea3          74 -PGPIDTERGIIIDPRNFP-LSQIPLANLLKEKYGIEVWVENDADMGAVG  121 (128)
T ss_dssp             -SSCEETTTTEECCCSSCT-TBTSCHHHHHHHHHCSEEEEEEHHHHHHHH
T ss_pred             -eeeEcCCCCEEEeecccc-ccCCchHHHHHHHcCCCEEEEeHHHHHHHH
Confidence             44321            1 111224566777788898765655555444

>d1saza1 c.55.1.2 (A:1-172) butyrate kinase 2 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: butyrate kinase 2
species: Thermotoga maritima [TaxId: 2336]

Probab=95.65  E-value=0.027  Score=44.95  Aligned_cols=71  Identities=8%  Similarity=0.188  Sum_probs=48.3

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeeccc-ccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLV-HKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAY   79 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~-~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~   79 (339)
                      |+||.|+.++.+++++|++++  +.++...++...- ...+    +..  ..+.+.....+..+|++.++++++||+|+.
T Consensus         2 mkILViN~GSSSlK~alf~~~--~~~~~~~i~~~~~e~~~~----~~i--~d~~~~~~~~i~~~L~~~~~~~~~i~avgh   73 (172)
T d1saza1           2 FRILTINPGSTSTKLSIFEDE--RMVKMQNFSHSPDELGRF----QKI--LDQLEFREKIARQFVEETGYSLSSFSAFVS   73 (172)
T ss_dssp             CEEEEEEECSSEEEEEEEETT--EEEEEEEEECCHHHHHTC----SSG--GGGHHHHHHHHHHHHHTTTCCGGGCSEEEE
T ss_pred             CEEEEEcCChHhheEEEEeCC--CceeEEEEEEcccccccc----Ccc--cchHHHHHHHHHHHHHHcCCChhcCeEEEE
Confidence            899999999999999999987  4666554432110 0011    000  122344456788889999999999999985

>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: N-acetylglucosamine kinase, NAGK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.16  Score=37.34  Aligned_cols=73  Identities=11%  Similarity=0.101  Sum_probs=49.7

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHH-HHHHHHHHHHHHHHHHHhCCCCCC-CcCEEEE
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELA-ARTHIQTIIPLLSKLLKNSNLELK-KIDIIAY   79 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~-~~~~~~~l~~~i~~~l~~~~i~~~-did~ia~   79 (339)
                      .+||||.+...+.++|++++ ++++++.+-         ++..|... ..+..+.+..+++.++++++++.. ++..+.+
T Consensus         4 ~~~GIDgGGTkT~~~l~d~~-G~~l~~~~~---------g~~N~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~i~~i~~   73 (117)
T d2ch5a2           4 IYGGVEGGGTRSEVLLVSED-GKILAEADG---------LSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGL   73 (117)
T ss_dssp             EEEEEEECTTCEEEEEEETT-SCEEEEEEE---------CCCCHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEE
T ss_pred             EEEEEEcChhhEEEEEECCC-CCEEEEEEc---------CCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCCccccEEEE
Confidence            58999999999999999887 788875431         12222211 123345566789999999888764 6787776


Q ss_pred             eCCCCC
Q psy9394          80 TRGPGL   85 (339)
Q Consensus        80 ~~gPG~   85 (339)
                      . -+|.
T Consensus        74 G-lAG~   78 (117)
T d2ch5a2          74 S-LSGG   78 (117)
T ss_dssp             E-ETTT
T ss_pred             E-eecc
Confidence            4 3454

>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Hypothetical protein SP2142
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.30  E-value=0.036  Score=40.76  Aligned_cols=58  Identities=17%  Similarity=0.241  Sum_probs=40.8

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |++++||.+.....+++++.+ ++++...++..           |     +..+.+...+.+.+++     .++..|+++
T Consensus         1 M~i~~iDiGgT~i~~~l~d~~-g~i~~~~~~~t-----------~-----~~~~~~~~~i~~~~~~-----~~i~gIGi~   58 (114)
T d2gupa1           1 MTIATIDIGGTGIKFASLTPD-GKILDKTSIST-----------P-----ENLEDLLAWLDQRLSE-----QDYSGIAMS   58 (114)
T ss_dssp             CCEEEEEEETTEEEEEEECTT-CCEEEEEEECC-----------C-----SSHHHHHHHHHHHHTT-----SCCSEEEEE
T ss_pred             CeEEEEEeCcccEEEEEEcCC-CCEEEEEEEcc-----------c-----ccHHHHHHHHHHHhhh-----cccceEEEe
Confidence            999999999999999999876 67886554321           1     1234556666666653     367778775

>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.035  Score=40.42  Aligned_cols=97  Identities=10%  Similarity=0.006  Sum_probs=56.6

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      ++|++|.+...+.+++++++ +.++...+....                ...+.+..+++.++++.+.   +++.+++. 
T Consensus         3 ~~L~~DIGGTn~r~alv~~~-~~~l~~~~~~~~----------------~~~~~~~~~i~~~~~~~~~---~~~~~~i~-   61 (110)
T d1q18a1           3 YALVGDVGGTNARLALCDIA-SGEISQAKTYSG----------------LDYPSLEAVIRVYLEEHKV---EVKDGCIA-   61 (110)
T ss_dssp             EEEEEEECSSEEEEEEEETT-TCCEEEEEEEEG----------------GGCSCHHHHHHHHHHHHTC---CCSEEEEE-
T ss_pred             EEEEEEECchhEEEEEEEcC-CCeEEEEEeecc----------------cchhhHHHHHHHHHhhccc---ccceEEEc-
Confidence            58999999999999999976 444443321111                1223355677777877665   56666654 


Q ss_pred             CCCCCchhHHHH------HHHHHHHHhcCCC-EEeecchhHHhhh
Q psy9394          82 GPGLPGSLLVGS------SIACSIALSINKP-VIGINHLEGHLLS  119 (339)
Q Consensus        82 gPG~~t~lr~g~------~~ak~la~~~~~p-~~~v~h~~aHa~s  119 (339)
                      .||..++-++..      ...+.+....+.| +.-++=..|-|++
T Consensus        62 ~ag~~~~~~~~~~n~~w~~~~~~l~~~~~~~~v~v~NDa~AaA~g  106 (110)
T d1q18a1          62 IACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMA  106 (110)
T ss_dssp             ESSCCCSSEECCSSGGGCEEHHHHHHHTTCSEEEEEEHHHHHHHH
T ss_pred             ccccccCcEEeecccCCccCHHHHHHHhCCCcEEEEehHHHHhcc
Confidence            233332111000      0135666677765 6666766666654

>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=93.48  E-value=0.075  Score=43.03  Aligned_cols=62  Identities=19%  Similarity=0.134  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHhC-----CCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHH
Q psy9394         248 DVLTFKCIAALKNTG-----INKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMR  315 (339)
Q Consensus       248 ~~l~~~~~~~~~~~~-----~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~  315 (339)
                      +.+.+++.+..++.+     ++.|.|+||.+....+++.|.+.+   +.++..+.   ..|.+++.|+|.+..
T Consensus       129 ~~~~~~i~~~l~~a~~~~~~Id~v~lvGG~sr~p~l~~~i~~~f---~~~~~~~~---~p~~aVa~GAa~~aa  195 (198)
T d1dkgd2         129 NRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF---GKEPRKDV---NPDEAVAIGAAVQGG  195 (198)
T ss_dssp             HHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHH---SSCCBCSS---CTTTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCChhHCcEEEEEcCccCCHHHHHHHHHHH---CCCCCCCC---ChHHHHHHHHHHHHH
Confidence            334455555555543     579999999999999999999987   33333332   347789999987653

>d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Hypothetical protein SP2142
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.35  E-value=0.34  Score=37.71  Aligned_cols=72  Identities=7%  Similarity=-0.004  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhC-------CcE-EEccCCCCCChhHHHHHHHHH
Q psy9394         242 FLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQY-------NYT-VFYPKKEFCTDNGAMIAFAGA  313 (339)
Q Consensus       242 ~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~-------~~~-v~~~~~~~~~D~G~aiG~a~~  313 (339)
                      +-+.++..+..+    ..-...+.|+|.||+..+..+.+.+.+.+++.       ... .+.+.  .-+|.+..+|++++
T Consensus        94 ~~~~la~~i~~~----i~~ldp~~IvlGG~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~s--~~~~~a~l~GAa~l  167 (175)
T d2gupa2          94 MNRNLAQGLLNI----QYLIDPGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQAC--TYHADANLYGALVN  167 (175)
T ss_dssp             HHHHHHHHHHHH----HHHHCCSEEEEESGGGGCHHHHHHHHHHHHHHHHHCTTCCSCCCEEEC--SCSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HHHhcCceEEECCcccchHHHHHHHHHHHHHHHhhccccCCCCEEEEC--CCCCcHHHHHHHHH
Confidence            334444444443    34457899999999998877666665555431       111 11221  23444557898887


Q ss_pred             HHHHhc
Q psy9394         314 MRIENN  319 (339)
Q Consensus       314 ~~~~~~  319 (339)
                      .+-++.
T Consensus       168 ~l~~~k  173 (175)
T d2gupa2         168 WLQEEK  173 (175)
T ss_dssp             HHHHTT
T ss_pred             HHHHhc
Confidence            765544

>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.35  E-value=0.12  Score=41.37  Aligned_cols=51  Identities=20%  Similarity=0.168  Sum_probs=38.5

Q ss_pred             CCCeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHHHHH
Q psy9394         262 GINKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAMRIE  317 (339)
Q Consensus       262 ~~~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~~~~  317 (339)
                      .++.|+|+||.+....+++.+.+.+..  .++..+   ...|.+++.|+|.+....
T Consensus       142 ~i~~V~lvGG~sr~p~v~~~i~~~f~~--~~i~~~---~~p~~aVa~GaA~~aa~l  192 (193)
T d1bupa2         142 QIHDIVLVGGSTRIPKIQKLLQDFFNG--KELNKS---INPDEAVAYGAAVQAAIL  192 (193)
T ss_dssp             GCCEEEEESGGGGCHHHHHHHHHHTTT--CCCBCS---SCGGGHHHHHHHHHHHHH
T ss_pred             HCCEEEEECCccccHHHHHHHHHHcCC--CCCCCC---CChHHHHHHHHHHHHHhh
Confidence            367999999999999999999887632  233322   245789999999887653

>d1saza2 c.55.1.2 (A:173-375) butyrate kinase 2 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: butyrate kinase 2
species: Thermotoga maritima [TaxId: 2336]

Probab=91.94  E-value=0.46  Score=38.31  Aligned_cols=69  Identities=13%  Similarity=0.080  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHh-C-CCeEEEEcchhhhH-HHHHHHHHHHHhCCc-EEEccCCCCCChhHHHHHHHHHHHH
Q psy9394         243 LDAIIDVLTFKCIAALKNT-G-INKLVVVGGVGANK-QLRKKLNILKKQYNY-TVFYPKKEFCTDNGAMIAFAGAMRI  316 (339)
Q Consensus       243 q~~l~~~l~~~~~~~~~~~-~-~~~v~laGGVa~N~-~l~~~l~~~l~~~~~-~v~~~~~~~~~D~G~aiG~a~~~~~  316 (339)
                      .+.+...+.+.+..+.... | ++.|+|+||++-|+ .+++++.++++  .+ .|++-|   ..|.=.+++..+.+.+
T Consensus       102 ~d~~~y~i~K~Iga~~a~L~G~vDaIvfTgGIgen~~~vr~~I~~~l~--~lgpv~v~P---g~nE~~ala~~alrvl  174 (203)
T d1saza2         102 YRAMAYQIAKWIGKMAAVLKGEVDFIVLTGGLAHEKEFLVPWITKRVS--FIAPVLVFP---GSNEEKALALSALRVL  174 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCCSEEEEEEGGGGCTTTHHHHHHHHHT--TTSCEEEEE---BCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCcHHHHHHHHHhcc--ccccEEEec---CCCHHHHHHHHHHHHh
Confidence            4444445555544444444 5 89999999999987 58999999884  33 455544   3455566777666654

>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative fructokinase YhdR
species: Bacillus subtilis [TaxId: 1423]

Probab=91.79  E-value=0.34  Score=35.21  Aligned_cols=94  Identities=11%  Similarity=0.049  Sum_probs=55.5

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      +++|||.+...+.+++++.+ ++++...++..             ...    +.....+.+.+++.     ++..|.++.
T Consensus         1 l~~giDiGgT~i~~~l~d~~-g~i~~~~~~~t-------------~~~----~~~~~~i~~~~~~~-----~~~~igi~~   57 (118)
T d1xc3a1           1 MLGGIEAGGTKFVCAVGRED-GTIIDRIEFPT-------------KMP----DETIEKVIQYFSQF-----SLQAIGIGS   57 (118)
T ss_dssp             CEEEEEECSSEEEEEEECTT-SCEEEEEEEEC-------------CCH----HHHHHHHHHHHTTS-----CCSEEEEEE
T ss_pred             CEEEEEeccCEEEEEEEcCC-CCEEEEEEecC-------------CCH----HHHHHHHHHHHhhc-----cceecceeE
Confidence            36899999999999999976 68887654321             011    12233333444432     566676542


Q ss_pred             CCCCCc--------h-------h-HHHHHHHHHHHHhcCCCEEeecchhHHhhh
Q psy9394          82 GPGLPG--------S-------L-LVGSSIACSIALSINKPVIGINHLEGHLLS  119 (339)
Q Consensus        82 gPG~~t--------~-------l-r~g~~~ak~la~~~~~p~~~v~h~~aHa~s  119 (339)
                       ||...        |       + .-++.+++.|....++|++-.+--.|.+++
T Consensus        58 -~G~v~~~~~~~~~g~v~~~~~~~w~~~~l~~~l~~~~~~pv~i~NDana~alg  110 (118)
T d1xc3a1          58 -FGPVDNDKTSQTYGTITATPKAGWRHYPFLQTVKNEMKIPVGFSTDVNAAALG  110 (118)
T ss_dssp             -CSSBCCCTTSTTTTSBCCCSSTTTBTCCHHHHHHHHHCSCEEEEEHHHHHHHH
T ss_pred             -EeeeecCCCccceeEEEcCCcccccCcCHHHHHHHHHCCCEEEeehHHHHHHH
Confidence             22210        0       0 123446777888889998876666665544

>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=91.69  E-value=0.52  Score=36.40  Aligned_cols=65  Identities=14%  Similarity=0.069  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCc----EEEccCCCCCChhHHHHHHHHHHH
Q psy9394         248 DVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNY----TVFYPKKEFCTDNGAMIAFAGAMR  315 (339)
Q Consensus       248 ~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~----~v~~~~~~~~~D~G~aiG~a~~~~  315 (339)
                      +.+...+..+..-...+.|+++||++.+..+...+.+.+.+...    ++....   .+|.+..+|+|.+++
T Consensus       100 ~~la~~l~~l~~~ldP~~IvlgG~i~~~~~~~~~i~~~~~~~~~~~~~~I~~s~---l~~~a~~~GAA~lA~  168 (170)
T d2aa4a2         100 RTLARLIADIKATTDCQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAH---YRHDAGLLGAALLAQ  168 (170)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEEHHHHTSTTHHHHHHHHHTTSCGGGCCEEEECS---CSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhheECCCEEEEeChhhhhhhHHHHHHHHHHhccCCCCCeEEecC---CCCcHHHHHHHHHHC
Confidence            33333344444455789999999998888888888777654322    333332   356666789888764

>d2ch5a1 c.55.1.5 (A:118-344) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: N-acetylglucosamine kinase, NAGK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.22  E-value=0.44  Score=39.06  Aligned_cols=82  Identities=13%  Similarity=0.022  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCC--------CeEEEEcchhhhH-HHHHHHHHHHHhCCc--------EEEccCCCC
Q psy9394         238 IARGFLDAIIDVLTFKCIAALKNTGI--------NKLVVVGGVGANK-QLRKKLNILKKQYNY--------TVFYPKKEF  300 (339)
Q Consensus       238 iAa~~q~~l~~~l~~~~~~~~~~~~~--------~~v~laGGVa~N~-~l~~~l~~~l~~~~~--------~v~~~~~~~  300 (339)
                      +|..+-+.-++.|.+.+..+.++.+.        -+|+++|||+.|. .+++.+.+.+.+...        .+-+.+  +
T Consensus       113 ~A~~Il~~aa~~La~~i~~~~~~l~~~~~~~~~~~~Vvl~Ggv~~~~~~l~~~~~~~L~~~~~~~~~~~~~~~~~~~--~  190 (227)
T d2ch5a1         113 LSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMK--L  190 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGSCGGGGCSTTCEEEEEESGGGGGHHHHHHHHHHHHHHHC---CCCSCSEEEEEE--E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchhhccccCCCeEEechHhhcchHHHHHHHHHHHHhcchhhcccCCeeEeec--C
Confidence            34444444455555555555555432        2599999999885 566667666654321        111111  1


Q ss_pred             CChhHHHHHHHHHHHHHhcCCCC
Q psy9394         301 CTDNGAMIAFAGAMRIENNYKSE  323 (339)
Q Consensus       301 ~~D~G~aiG~a~~~~~~~~~~~~  323 (339)
                      ..|  -++|++.+.+-..|...|
T Consensus       191 ~~~--p~~GAa~LA~~~~g~~~~  211 (227)
T d2ch5a1         191 RHS--SALGGASLGARHIGHLLP  211 (227)
T ss_dssp             SSC--THHHHHHHHHHTTTCCCC
T ss_pred             CCc--cHHHHHHHHHHHcCCCCC
Confidence            222  367888888777777666

>d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.90  E-value=1.5  Score=33.45  Aligned_cols=64  Identities=16%  Similarity=0.142  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHhCCCeEEEEcchh-hhHHHHHHHHHHHHhCCc-----EEEccCCCCCChhHHHHHHHHHHH
Q psy9394         249 VLTFKCIAALKNTGINKLVVVGGVG-ANKQLRKKLNILKKQYNY-----TVFYPKKEFCTDNGAMIAFAGAMR  315 (339)
Q Consensus       249 ~l~~~~~~~~~~~~~~~v~laGGVa-~N~~l~~~l~~~l~~~~~-----~v~~~~~~~~~D~G~aiG~a~~~~  315 (339)
                      .+...+..+..-...+.|++.|++. .+..+.+.+.+.+++...     ++.+..   .+|...++|++.+..
T Consensus        90 ~la~~l~n~~~~~dPe~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~s~---~~~~a~~~GAa~~~~  159 (169)
T d2hoea2          90 YFSIGLLNLIHLFGISKIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSK---VQEPVIAFGAAVHAL  159 (169)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECC---CCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEeChHHhchHHHHHHHHHHHHHhcCCCCCCEEEECC---CCCCHHHHHHHHHHH
Confidence            3333334444455789999999998 478888888888875322     333332   456677888877653

>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: RuvC resolvase
domain: RuvC resolvase
species: Escherichia coli [TaxId: 562]

Probab=90.75  E-value=0.81  Score=35.26  Aligned_cols=62  Identities=15%  Similarity=0.205  Sum_probs=36.4

Q ss_pred             EEEEEecCCCceeEEEEECCCCc--eeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394           2 IILGIESSCDDSGLALYDTHIKN--LRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAY   79 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~--i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~   79 (339)
                      +|||||-|+..++.|+++...++  ++....+..     +. ..+     ..+...+...+.+++++.     .+|.|++
T Consensus         2 iILGIDPGl~~~G~avid~~~~~~~~v~~g~i~t-----~~-~~~-----~~Rl~~i~~~l~~li~~~-----~Pd~vai   65 (158)
T d1hjra_           2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-----KV-DDL-----PSRLKLIYAGVTEIITQF-----QPDYFAI   65 (158)
T ss_dssp             EEEEEECCSSEEEEEEEEEETTEEEEEEEEEEEC-----CC-SCH-----HHHHHHHHHHHHHHHHHH-----CCSEEEE
T ss_pred             EEEEEccCCCceEEEEEEeeCCEEEEEEeeEEeC-----CC-CCh-----HHHHHHHHHHHHHHHhcc-----CCCEEEE
Confidence            69999999999999999854122  333322211     10 111     123445556677777754     4567775

>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

Probab=90.19  E-value=0.023  Score=47.93  Aligned_cols=77  Identities=13%  Similarity=0.110  Sum_probs=50.6

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEeC
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYTR   81 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~~   81 (339)
                      ++||||.++..++++|++.+ ++++++.... .+...+..|.... ....-++.+...++++++.+++++.+|.+|+++.
T Consensus         2 yvlgiDiGTtsvKa~l~D~~-g~~~~~~~~~-~~~~~~~~g~~eq-d~~~~~~~~~~~~~~~~~~~~~~~~~i~aI~is~   78 (252)
T d1r59o1           2 YVMAIDQGTTSSRAIIFDRN-GKKIGSSQKE-FPQYFPKSGWVEH-NANEIWNSVQSVIAGAFIESGIRPEAIAGIGITN   78 (252)
T ss_dssp             EEEEEBCCSSBCBCCEECSS-SCBCCCCCCB-CCCCCCSTTCCBC-CGGGSSSTTTTTSHHHHTTTTCCTTSEEEEEECC
T ss_pred             EEEEEEecccceeeeEEeCC-CCEEEEEEEe-CCceecCCCcEEE-CHHHHHHHHHHHHHHHhhhhhhcccccceEEEeC
Confidence            68999999999999999876 6788653221 1112222232210 1112234455678888898999888999998873

>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein, YqgF homologue
species: Thermus thermophilus [TaxId: 274]

Probab=90.17  E-value=0.5  Score=33.47  Aligned_cols=87  Identities=8%  Similarity=-0.014  Sum_probs=52.0

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEE--EEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEE
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSH--VICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIA   78 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~--~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia   78 (339)
                      |++||||-+...+++|+-+.. + .++.  ..+.+                 +..+.....+.++.++.     +++.|+
T Consensus         1 MriLglD~G~kriGiAisd~~-~-~~a~pl~~i~~-----------------~~~~~~~~~l~~ii~e~-----~i~~iV   56 (98)
T d1iv0a_           1 MRVGALDVGEARIGLAVGEEG-V-PLASGRGYLVR-----------------KTLEEDVEALLDFVRRE-----GLGKLV   56 (98)
T ss_dssp             CCEEEEEESSSEEEEEEECSC-C-SSCCCEEEEEC-----------------CCHHHHHHHHHHHHHHH-----TCCEEE
T ss_pred             CcEEEEEcCCCEEEEEEecCC-C-CeEcceEEEEC-----------------CCchHHHHHHHHHHHhh-----ccceeE
Confidence            999999999999999999876 3 4442  22211                 11122334555665543     678888


Q ss_pred             EeCCCC----CCc-hhHHHHHHHHHHHHhcCCCEEeecch
Q psy9394          79 YTRGPG----LPG-SLLVGSSIACSIALSINKPVIGINHL  113 (339)
Q Consensus        79 ~~~gPG----~~t-~lr~g~~~ak~la~~~~~p~~~v~h~  113 (339)
                      ++. |-    ..+ -......|++.|. ..++|+..+++.
T Consensus        57 vGl-P~~~dG~~~~~~~~v~~f~~~L~-~~~lpv~~~DEr   94 (98)
T d1iv0a_          57 VGL-PLRTDLKESAQAGKVLPLVEALR-ARGVEVELWDER   94 (98)
T ss_dssp             EEC-CCCCCSSSCCCSSTTHHHHHHHH-HTTCEEEEECCS
T ss_pred             ccc-ccccCCCcCHHHHHHHHHHHHHh-hCCCCEEEEcCC
Confidence            862 31    111 1122344666675 357888877664

>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Tex RuvX-like domain-like
domain: Transcriptional accessory factor Tex
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.44  E-value=3.6  Score=31.12  Aligned_cols=95  Identities=15%  Similarity=0.237  Sum_probs=51.4

Q ss_pred             EEEEEecCC-CceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           2 IILGIESSC-DDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         2 ~iLgidts~-~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      .|||||-+. +-|++|+++.+ |+++...++-.   |.+          ....+.....+.+++++.     +++.||++
T Consensus         6 ~vlg~DPg~r~gck~AvlD~~-G~vld~~viyp---~~~----------~~~~~~a~~~l~~li~k~-----~p~vIaIG   66 (149)
T d3bzka5           6 ATLGLDPGLRTGVKVAVVDAT-GKLLDTATVYP---HAP----------KNQWDQTLAVLAALCAKH-----QVELIAIG   66 (149)
T ss_dssp             CEEEEECCSTTCEEEEEECTT-SCEEEEEEECC---STT----------TCCHHHHHHHHHHHHHHT-----TCCEEEEE
T ss_pred             eEEEECCCcccccEEEEECCC-CCEEEEEEEec---CCc----------HHHHHHHHHHHHHHHHHc-----CCeEEEEC
Confidence            489999985 56779999987 78887654311   111          111222233455555543     67899997


Q ss_pred             CCCCCCchhHHHHHHHHHHHHh---cCCCEEeecchhHHhhh
Q psy9394          81 RGPGLPGSLLVGSSIACSIALS---INKPVIGINHLEGHLLS  119 (339)
Q Consensus        81 ~gPG~~t~lr~g~~~ak~la~~---~~~p~~~v~h~~aHa~s  119 (339)
                      .|..    -|--..+...+-..   .++++.-|+..-|-+++
T Consensus        67 NgTa----sre~~~~v~~l~~~~~~~~i~~~iV~e~gAsvYs  104 (149)
T d3bzka5          67 NGTA----SRETDKLAGELIKKYPGMKLTKIMVSEAGASVYS  104 (149)
T ss_dssp             SSTT----HHHHHHHHHHHHHHCGGGCCEEEEECCTTHHHHH
T ss_pred             CCcc----HHHHHHHHHHHHHhCCCCCcEEEEEeccchhhhh
Confidence            6543    23333333333222   24455555555554444

>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK
species: Arthrobacter sp. KM [TaxId: 184230]

Probab=88.27  E-value=3.3  Score=29.73  Aligned_cols=106  Identities=13%  Similarity=0.160  Sum_probs=56.2

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEE-EeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHV-ICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~-~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      .+||||.+...+.+++++...++++.+. ++..   ..+. +      ...-.+.+...++.+.++.. ....+..|+++
T Consensus         3 ~vlGiDiGgT~i~~~l~d~~~g~i~~~~~~~~t---~~~~-~------~~~~~~~i~~~~~~l~~~~~-~~~~~~gIGi~   71 (129)
T d1woqa1           3 PLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPT---PQPA-T------PESVAEAVALVVAELSARPE-APAAGSPVGVT   71 (129)
T ss_dssp             CEEEEEECSSEEEEEEEETTTTEEEEEEEEEEC---CSSC-C------HHHHHHHHHHHHHHHHTSTT-CCCTTCCEEEE
T ss_pred             CEEEEEECcceEEEEEEECCCCEEEEEEeeccc---ccCC-C------HHHHHHHHHHHHHHHHhccc-cccccceeeec
Confidence            3799999999999999985314555432 2211   0000 0      11223334455665544332 23345566654


Q ss_pred             CCCCCCc--------hh---HHHHHHHHHHHHhcCCCEEeecchhHHhhh
Q psy9394          81 RGPGLPG--------SL---LVGSSIACSIALSINKPVIGINHLEGHLLS  119 (339)
Q Consensus        81 ~gPG~~t--------~l---r~g~~~ak~la~~~~~p~~~v~h~~aHa~s  119 (339)
                       -||...        .+   .-++.+.+.|...+++|++--+.-.|.+++
T Consensus        72 -~pG~vd~~~~~~~~~~~~~w~~~~l~~~l~~~~~~pv~i~NDan~aalg  120 (129)
T d1woqa1          72 -FPGIIQHGVVHSAANVDKSWLNTDIDALLTARLGRPVEVINDADAAGLA  120 (129)
T ss_dssp             -ESSCEETTEECCCTTSCGGGTTCBHHHHHHHHHTSCEEEEEHHHHHHHH
T ss_pred             -ceeeEecCeEEEecccCCCcccccchhhHHHhcCCcEEEEEhHHHHHHH
Confidence             354431        11   122335667777788998766655555443

>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YrrK (RuvX)
species: Bacillus subtilis [TaxId: 1423]

Probab=87.00  E-value=0.48  Score=35.87  Aligned_cols=93  Identities=24%  Similarity=0.238  Sum_probs=56.2

Q ss_pred             CEEEEEecCCCceeEEEEECCCCceeEE--EEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEE
Q psy9394           1 MIILGIESSCDDSGLALYDTHIKNLRSH--VICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIA   78 (339)
Q Consensus         1 M~iLgidts~~~~~~al~~~~~~~i~~~--~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia   78 (339)
                      |++||||-+...+++|+-+.. + .++.  ..+....               .....+...+..++++     .+++.|+
T Consensus         2 mriLgiD~G~kriGvAisd~~-~-~~a~pl~~i~~~~---------------~~~~~~~~~l~~ii~e-----~~i~~iV   59 (140)
T d1vhxa_           2 LRILGLDLGTKTLGVALSDEM-G-WTAQGIETIKINE---------------AEGDYGLSRLSELIKD-----YTIDKIV   59 (140)
T ss_dssp             EEEEEEEECSSEEEEEEECTT-S-SSEEEEEEEECBG---------------GGTBCCHHHHHHHHTT-----SEEEEEE
T ss_pred             ceEEEEEeCCCEEEEEEecCC-C-CcccceeeEeecc---------------cccchHHHHHHHHHHh-----hccceEE
Confidence            899999999999999998766 3 4332  1221100               0111123456666654     2678888


Q ss_pred             EeCCC----CCCch-hHHHHHHHHHHHHhcCCCEEeecchhHH
Q psy9394          79 YTRGP----GLPGS-LLVGSSIACSIALSINKPVIGINHLEGH  116 (339)
Q Consensus        79 ~~~gP----G~~t~-lr~g~~~ak~la~~~~~p~~~v~h~~aH  116 (339)
                      ++. |    |..+- ......|++.+....++|++.+++...-
T Consensus        60 iGl-P~~~dg~~~~~~~~~~~f~~~l~~~~~i~V~~~DEr~TS  101 (140)
T d1vhxa_          60 LGF-PKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLTT  101 (140)
T ss_dssp             EEC-CCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSCH
T ss_pred             Eec-ccccCCcchhHHHHHHHHHHHhccCCCccEEEeecccCH
Confidence            863 3    22221 2233456777777788998887766543

>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: Diol dehydratase-reactivating factor large subunit DdrA
species: Klebsiella oxytoca [TaxId: 571]

Probab=86.65  E-value=1.3  Score=35.58  Aligned_cols=68  Identities=18%  Similarity=0.258  Sum_probs=48.4

Q ss_pred             EEEEEecCCCceeEEEEE--CCCCceeE--EEEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEE
Q psy9394           2 IILGIESSCDDSGLALYD--THIKNLRS--HVICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDII   77 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~--~~~~~i~~--~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~i   77 (339)
                      +|.|||.++.++-+||.+  ++ +++-+  +...       +..|+.-+   +++......+++.+|+++|++.+|++.|
T Consensus         3 ~IaGiDIGNstTEvala~v~~~-g~~~fl~S~i~-------~TTGiKGT---~~Ni~Gv~~aL~~al~k~g~~~~d~~lI   71 (241)
T d2d0oa2           3 YIAGIDIGNSSTEVALATLDEA-GALTITHSALA-------ETTGIKGT---LRNVFGIQEALALVARGAGIAVSDISLI   71 (241)
T ss_dssp             EEEEEEECSSEEEEEEEEECTT-CCEEEEEEEEE-------ECCSSTTS---TTHHHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred             eEEEEecCcchhhhheeeecCC-CcEEEEecccc-------cccccccc---HHHHHHHHHHHHHHHHHcCCCHHHhhee
Confidence            588999999999999876  33 44433  3221       22344333   3445667789999999999999999999


Q ss_pred             EEe
Q psy9394          78 AYT   80 (339)
Q Consensus        78 a~~   80 (339)
                      -++
T Consensus        72 riN   74 (241)
T d2d0oa2          72 RIN   74 (241)
T ss_dssp             EEE
T ss_pred             eec
Confidence            876

>d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative regulator protein YcfX
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.22  E-value=0.37  Score=37.70  Aligned_cols=71  Identities=17%  Similarity=0.098  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhCCc------EEEccCCCCCChhHHHHHHHHHH
Q psy9394         241 GFLDAIIDVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQYNY------TVFYPKKEFCTDNGAMIAFAGAM  314 (339)
Q Consensus       241 ~~q~~l~~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~~~------~v~~~~~~~~~D~G~aiG~a~~~  314 (339)
                      .+-+...+.+...+..+..-...+.|++.||++....+...+.+.+.+.-+      +|...   --++.+..+|+|.+.
T Consensus       107 ~i~~~~~~~la~~i~nl~~~ldPe~IvlGG~i~~~~~~~~~l~~~~~~~~~~~~~~~~I~~s---~lg~~a~~~GAA~la  183 (186)
T d2ap1a1         107 AHVERYLDLLAVCLGNILTIVDPDLLVIGGGLSNFTAITTQLAERLPRHLLPVARAPRIERA---RHGDAGGMRGAAFLH  183 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGSTHHHHSSGGGSGGGSCTTCCCCEEEEC---SCTTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcCEEEECCchhhhHHHHHHHHHHHHHHhcCcCCCCEEEEC---CCCChHHHHHHHHHh
Confidence            344444455555555555566889999999999876666667666544211      22222   235556668877654

>d1z05a2 c.55.1.10 (A:209-405) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Transcriptional regulator VC2007
species: Vibrio cholerae [TaxId: 666]

Probab=84.13  E-value=3.8  Score=31.89  Aligned_cols=65  Identities=11%  Similarity=0.065  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHhCCCeEEEEcchhh-hHHHHHHHHHHHHhCC-------cEEEccCCCCCChhHHHHHHHHHH
Q psy9394         247 IDVLTFKCIAALKNTGINKLVVVGGVGA-NKQLRKKLNILKKQYN-------YTVFYPKKEFCTDNGAMIAFAGAM  314 (339)
Q Consensus       247 ~~~l~~~~~~~~~~~~~~~v~laGGVa~-N~~l~~~l~~~l~~~~-------~~v~~~~~~~~~D~G~aiG~a~~~  314 (339)
                      .+.+...+..+..-...+.|++.||++. +..+.+.+.+.+++.-       .++....  +-+| +..+|+|...
T Consensus       110 ~~~la~~i~nl~~~ldP~~IviGG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~I~~s~--lg~~-a~~~GAA~l~  182 (197)
T d1z05a2         110 GRYLGAAIAIVINLFNPEKILIGGVINQAKSILYPSIEQCIREQSLPVYHQDLKLVESR--FYKQ-ATMPGAALIK  182 (197)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECS--CSSC-TTHHHHHHHH
T ss_pred             HHHHHHHHHhHHHhcCCCEEEEecchHHhhHHHHHHHHHHHHHhcccccCCCCEEEECC--CCCc-HHHHHHHHHH
Confidence            3334444444444557899999999884 6667777777765432       2343332  4444 4467776543

>d1xc3a2 c.55.1.10 (A:119-294) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative fructokinase YhdR
species: Bacillus subtilis [TaxId: 1423]

Probab=83.21  E-value=2.3  Score=32.65  Aligned_cols=68  Identities=12%  Similarity=0.016  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEcchhhhHHHHHHHHHHHHhC--C-cEE-EccC----C---CCCChhHHHHHHHHHHH
Q psy9394         248 DVLTFKCIAALKNTGINKLVVVGGVGANKQLRKKLNILKKQY--N-YTV-FYPK----K---EFCTDNGAMIAFAGAMR  315 (339)
Q Consensus       248 ~~l~~~~~~~~~~~~~~~v~laGGVa~N~~l~~~l~~~l~~~--~-~~v-~~~~----~---~~~~D~G~aiG~a~~~~  315 (339)
                      +.+...+..+..-...+.|++.||++.+..+...+.+.+.+.  . ... .+++    +   .--+|.+..+|++.+..
T Consensus        89 ~~la~~i~~~~~~~dP~~IviGGgi~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~I~~s~lg~~a~l~GAa~la~  167 (176)
T d1xc3a2          89 YYIAQALAQYILILAPKKIILGGGVMQQKQVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAGIIGTLVLAH  167 (176)
T ss_dssp             HHHHHHHHHHHHHTCCSCEEEESGGGGSTHHHHHHHHHHHHHHTTSSCCGGGTTTGGGTEECCTTGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEEcChhhccHhHHHHHHHHHHHHHHHhhccccccccCCCeEEeCCCCCcHHHHHHHHHHH
Confidence            334444444444567899999999998866555544444321  1 111 0000    0   01356677788877653

>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YqgF (RuvX)
species: Escherichia coli [TaxId: 562]

Probab=82.85  E-value=2  Score=32.07  Aligned_cols=90  Identities=12%  Similarity=0.011  Sum_probs=55.0

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEE--EEeeecccccccCCccchHHHHHHHHHHHHHHHHHHHhCCCCCCCcCEEEE
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSH--VICSQNLVHKEYGGVVPELAARTHIQTIIPLLSKLLKNSNLELKKIDIIAY   79 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~--~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~i~~~l~~~~i~~~did~ia~   79 (339)
                      .+||||-++..+++|+-+.. + .++.  ..+.+.                 ........++.++++-     +++.|++
T Consensus         4 riLgiD~G~kriGvAvsd~~-~-~~a~pl~~i~~~-----------------~~~~~~~~l~~i~~e~-----~~~~iVv   59 (138)
T d1nu0a_           4 TLMAFDFGTKSIGVAVGQRI-T-GTARPLPAIKAQ-----------------DGTPDWNIIERLLKEW-----QPDEIIV   59 (138)
T ss_dssp             EEEEEECCSSEEEEEEEETT-T-TEEEEEEEEEEE-----------------TTEECHHHHHHHHHHH-----CCSEEEE
T ss_pred             cEEEEEeCCCEEEEEEeCCC-C-Cccccceeeecc-----------------cchhhHHHHHHHhhcc-----CccEEEe
Confidence            68999999999999999977 3 4442  222210                 0111223445555542     6788887


Q ss_pred             eC--C-CCCCc-hhHHHHHHHHHHHHhcCCCEEeecchhH
Q psy9394          80 TR--G-PGLPG-SLLVGSSIACSIALSINKPVIGINHLEG  115 (339)
Q Consensus        80 ~~--g-PG~~t-~lr~g~~~ak~la~~~~~p~~~v~h~~a  115 (339)
                      +.  + -|..+ .......|++.|....++|++.+++...
T Consensus        60 G~P~~~~g~~~~~~~~v~~f~~~L~~~~~i~V~~~DEr~T   99 (138)
T d1nu0a_          60 GLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLS   99 (138)
T ss_dssp             EEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_pred             ecccccccchHHHHHHHHHHHHHHhhccCCCeEEEecccc
Confidence            52  1 12222 2444556788888888999988777543

>d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hypothetical protein PG1100
species: Porphyromonas gingivalis [TaxId: 837]

Probab=82.62  E-value=0.88  Score=32.47  Aligned_cols=68  Identities=16%  Similarity=0.201  Sum_probs=37.9

Q ss_pred             EEEEEecCCCceeEEEEECCCCceeEEEEeeecccccccCCccchHHHHHHHHH-HHHHHHHHHHhCCCCCCCcCEEEEe
Q psy9394           2 IILGIESSCDDSGLALYDTHIKNLRSHVICSQNLVHKEYGGVVPELAARTHIQT-IIPLLSKLLKNSNLELKKIDIIAYT   80 (339)
Q Consensus         2 ~iLgidts~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~-l~~~i~~~l~~~~i~~~did~ia~~   80 (339)
                      |||++|.++..+..+|.+++  +++...+-         +|..|...+.+.... +...+.   +......++++.+.+.
T Consensus         1 MilivDgGgTKT~~vl~d~g--~~i~~~~t---------~g~Np~~~~~~~~~~~l~~~~~---~~l~~~~~~i~~i~~g   66 (107)
T d1zbsa2           1 MILIGDSGSTKTDWCIAKEG--KSLGRFQT---------SGINPFQQDRNEIDTALRSEVL---PAIGQKASSIRAVYFY   66 (107)
T ss_dssp             CEEEEEECSSEEEEEEEETT--EEEEEEEE---------ECCCTTTSCHHHHHHHHTTTTH---HHHTTSTTTCCEEEEE
T ss_pred             CEEEEEeccccEEEEEECCC--CeEEEEec---------CCcCcccCCHHHHHHHHHHHHH---HHHhccccCCcEEEEE
Confidence            46889999999998888866  67765321         233332222322222 222222   2333556789988765


Q ss_pred             CCCC
Q psy9394          81 RGPG   84 (339)
Q Consensus        81 ~gPG   84 (339)
                       +.|
T Consensus        67 -~AG   69 (107)
T d1zbsa2          67 -GAG   69 (107)
T ss_dssp             -ETT
T ss_pred             -ecC
Confidence             344

>d1z6ra3 c.55.1.10 (A:211-406) Mlc protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Mlc protein
species: Escherichia coli [TaxId: 562]

Probab=81.80  E-value=4.3  Score=31.45  Aligned_cols=63  Identities=11%  Similarity=-0.021  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHhCCCeEEEEcchhh-hHHHHHHHHHHHHhC-------CcEEEccCCCCCChhHHHHHHHH
Q psy9394         247 IDVLTFKCIAALKNTGINKLVVVGGVGA-NKQLRKKLNILKKQY-------NYTVFYPKKEFCTDNGAMIAFAG  312 (339)
Q Consensus       247 ~~~l~~~~~~~~~~~~~~~v~laGGVa~-N~~l~~~l~~~l~~~-------~~~v~~~~~~~~~D~G~aiG~a~  312 (339)
                      .+.+...+..+..-...+.|+++||+.. +..+.+.+.+.+++.       ..+|...+  ..+|+ ..+|+|.
T Consensus       109 ~~~la~~i~~l~~~ldP~~IvigG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~~s~--l~~~a-~~~GAAl  179 (196)
T d1z6ra3         109 GAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQ--FSNQG-TMAGAAL  179 (196)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECS--CCCCT-TTTHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEecchhhhhHHHHHHHHHHHHHhcccccCCCcEEEECC--CCChH-HHHHHHH
Confidence            3334444444444557899999999984 456667777666542       23455544  44554 4477654

>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=81.73  E-value=0.65  Score=36.27  Aligned_cols=45  Identities=11%  Similarity=0.094  Sum_probs=35.3

Q ss_pred             CeEEEEcchhhhHHHHHHHHHHHHhCCcEEEccCCCCCChhHHHHHHHHHH
Q psy9394         264 NKLVVVGGVGANKQLRKKLNILKKQYNYTVFYPKKEFCTDNGAMIAFAGAM  314 (339)
Q Consensus       264 ~~v~laGGVa~N~~l~~~l~~~l~~~~~~v~~~~~~~~~D~G~aiG~a~~~  314 (339)
                      +.|+|+||.++-..+.+.+.+.+   |.++.+...   -|..++.|++.+.
T Consensus       139 ~~IvLvGGsS~ip~v~~~l~~~f---g~~v~~~~~---P~~aVA~GAai~~  183 (196)
T d1jcea2         139 RGIFLTGGGSLLRGLDTLLQKET---GISVIRSEE---PLTAVAKGAGMVL  183 (196)
T ss_dssp             HCEEEESGGGCSBTHHHHHHHHH---SSCEEECSS---TTTHHHHHHHHGG
T ss_pred             cceEEeCchhcchhHHHHHHHHH---CcCCccCCC---hHHHHHHHHHHHH
Confidence            45999999999999999999987   566666542   2667888987654

>d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway
species: Streptomyces sp. r1128 [TaxId: 140437]

Probab=80.58  E-value=2  Score=32.67  Aligned_cols=31  Identities=10%  Similarity=0.181  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCcCEEEEeCCCCC
Q psy9394          53 IQTIIPLLSKLLKNSNLELKKIDIIAYTRGPGL   85 (339)
Q Consensus        53 ~~~l~~~i~~~l~~~~i~~~did~ia~~~gPG~   85 (339)
                      .+.++++++.+|+++|++++|||.+++  |+++
T Consensus        47 v~~vp~~i~~~L~~~gl~~~dId~~i~--Hq~~   77 (153)
T d1mzja2          47 VADVVPAAREALEVAGLTVGDLVAFVP--HQAN   77 (153)
T ss_dssp             HHHHHHHHHHHHHTTTCCGGGCSEEEE--CCSC
T ss_pred             HHHHHHHHHHHHHHhCCCcccCCEEEE--cCCc
Confidence            466788999999999999999999985  5654