Psyllid ID: psy9493

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MKILCVFALLYTVAVSSENIYSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQVRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAPVHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHccccccHHcccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHccccccHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHc
Coil and Loop (DISEMBL)
MKILCVFALLYTVAVSSeniysresnvrfksqldvepniqlrhldnpfrmgKLNLLWKKAQVRLSEPKLKSIYNELKIHDKEEILFKKvkadgldpdgqregILRKRLVGIMSTYGllehfediqgekikldtddnapvhkpravfkdkKLNKLWEKaehsgftcknvkfnnqel
Flexible Loop (DISEMBL)
MKILCVFALLYTVAVSSENIYSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQVRLSEPKLKSIYNELkihdkeeilfkkvkadgldpdgqregilrKRLVGIMSTYGLLEHFEDIQGEKikldtddnapvhkpravfkdkklNKLWEkaehsgftcknvkfnnqel
Low Complexity Region (SEG)
MKILCVFALLYTVAVSSENIYSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQVRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAPVHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL
Disordered region (IsUnstruct)
**ILCVFALLYTVAVSSENIYSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQVRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLD***********AVFKDKKLNKLWEKAEHSGFTCK*********
Disordered Region (DISOPRED)
*KILCVFALLYTVAVSS******************************FRMGKLNLLWKKAQV***********NELKIHDKEEILF***************GILRKRLVGIMSTYGLLEHF*****************************LNKLWEKAEHSG****NVKFNNQE*
Disordered Region (DISEMBL)
MKILCVFALLYTVAVSSENIYSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQVRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAPVHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL
Disordered Region (DISPRO)
MKILCVFALLYTVAVSSENIYSRE*N**********PNIQLRHLDNPFRMGKLNLLWKKAQVRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDI*******************AVFKDKKLNKLWEKAEHSGFTCKNVKFNNQ*L
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKILCVFALLYTVAVSSENIYSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQVRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAPVHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
P30533	357	Alpha-2-macroglobulin rec	yes	N/A	0.8	0.392	0.371	3e-13
Q99068	360	Alpha-2-macroglobulin rec	yes	N/A	0.76	0.369	0.363	4e-13
P55302	360	Alpha-2-macroglobulin rec	yes	N/A	0.76	0.369	0.363	8e-13

>sp|P30533|AMRP_HUMAN Alpha-2-macroglobulin receptor-associated protein OS=Homo sapiens GN=LRPAP1 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 83/164 (50%), Gaps = 24/164 (14%)

Query: 14  AVSSENIYSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQVRLSEP--KLKS 71
           A S    YSRE N     Q    P    R     FRM KLN LW+KAQ RL  P  +L  
Sbjct: 28  AASHGGKYSREKN-----QPKPSPK---RESGEEFRMEKLNQLWEKAQ-RLHLPPVRLAE 78

Query: 72  IYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKL 131
           ++ +LKI +++E+ +KK+K DGLD DG++E  L + L  I++ YGL        G+K   
Sbjct: 79  LHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGL-------DGKKDAR 131

Query: 132 DTDDNAPVHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
               N+          D +L KLW KA+ SG      KF+ +EL
Sbjct: 132 QVTSNSLSGTQEDGLDDPRLEKLWHKAKTSG------KFSGEEL 169

Interacts with LRP1/alpha-2-macroglobulin receptor and glycoprotein 330.
Homo sapiens (taxid: 9606)

>sp|Q99068|AMRP_RAT Alpha-2-macroglobulin receptor-associated protein OS=Rattus norvegicus GN=Lrpap1 PE=1 SV=2

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 83/157 (52%), Gaps = 24/157 (15%)

Query: 21  YSRESNVRFKSQLDVEPNIQL-RHLDNPFRMGKLNLLWKKA-QVRLSEPKLKSIYNELKI 78
           YSRE N         EP +   R     FRM KLN LW+KA ++ LS  +L  ++++LKI
Sbjct: 38  YSREKN---------EPEMAAKRESGEEFRMEKLNQLWEKAKRLHLSPVRLAELHSDLKI 88

Query: 79  HDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAP 138
            +++E+ +KK+K +GLD DG++E  L   L  I++ YGL        G K       NA 
Sbjct: 89  QERDELNWKKLKVEGLDGDGEKEAKLVHNLNVILARYGL-------DGRKDTQTVHSNAL 141

Query: 139 VHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
               +    D +L KLW KA+ SG      KF+++EL
Sbjct: 142 NEDTQDELGDPRLEKLWHKAKTSG------KFSSEEL 172

Interacts with LRP1/alpha-2-macroglobulin receptor and glycoprotein 330.

Rattus norvegicus (taxid: 10116)

>sp|P55302|AMRP_MOUSE Alpha-2-macroglobulin receptor-associated protein OS=Mus musculus GN=Lrpap1 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 83/157 (52%), Gaps = 24/157 (15%)

Query: 21  YSRESNVRFKSQLDVEPNIQL-RHLDNPFRMGKLNLLWKKA-QVRLSEPKLKSIYNELKI 78
           YSRE N         EP +   R     FRM KLN LW+KA ++ LS  +L  ++++LKI
Sbjct: 38  YSREKN---------EPEMAAKRESGEEFRMEKLNQLWEKAKRLHLSPVRLAELHSDLKI 88

Query: 79  HDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAP 138
            +++E+ +KK+K +GLD DG++E  L   L  I++ YGL        G K       NA 
Sbjct: 89  QERDELNWKKLKVEGLDKDGEKEAKLIHNLNVILARYGL-------DGRKDAQMVHSNAL 141

Query: 139 VHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
               +    D +L KLW KA+ SG      KF+++EL
Sbjct: 142 NEDTQDELGDPRLEKLWHKAKTSG------KFSSEEL 172

Interacts with LRP1/alpha-2-macroglobulin receptor and glycoprotein 330.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
121543939	361	hypothetical protein [Maconellicoccus hi	0.834	0.404	0.564	1e-37
158291722	383	AGAP003521-PA [Anopheles gambiae str. PE	0.897	0.409	0.497	1e-35
242019740	362	alpha-2-macroglobulin receptor-associate	0.885	0.428	0.509	2e-35
195113151	380	GI10613 [Drosophila mojavensis] gi|19391	0.885	0.407	0.534	3e-35
383856901	367	PREDICTED: alpha-2-macroglobulin recepto	0.897	0.427	0.521	3e-35
195390925	380	GJ22967 [Drosophila virilis] gi|19415220	0.988	0.455	0.486	4e-35
195454331	375	GK12751 [Drosophila willistoni] gi|19417	0.988	0.461	0.491	5e-35
270002092	368	hypothetical protein TcasGA2_TC001043 [T	0.902	0.429	0.485	7e-35
189234591	365	PREDICTED: similar to CG8507 CG8507-PA [	0.902	0.432	0.485	8e-35
110755689	365	PREDICTED: alpha-2-macroglobulin recepto	0.925	0.443	0.482	2e-34

>gi|121543939|gb|ABM55634.1| hypothetical protein [Maconellicoccus hirsutus]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/147 (56%), Positives = 106/147 (72%), Gaps = 1/147 (0%)

Query: 19  NIYSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQVRLSEPKLKSIYNELKI 78
           N YS+E+NV+ K   + + N  +R +D PFRM KLNLLW K ++RLSEPKLKS Y++LK+
Sbjct: 24  NKYSKEANVKLKEYFEEDVNFHVRDVDKPFRMAKLNLLWAKGKLRLSEPKLKSFYSDLKL 83

Query: 79  HDKEEILFKKVKADG-LDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNA 137
           HDKEEI FK   A G  D +G +E  LRK+L+GIMSTYGLLEHF+++Q  K   D D + 
Sbjct: 84  HDKEEIAFKHYIATGNSDKEGLKEAELRKKLIGIMSTYGLLEHFQEMQDVKKVKDYDIHP 143

Query: 138 PVHKPRAVFKDKKLNKLWEKAEHSGFT 164
             +  R VFKDKKLNKLW KAE +GF+
Sbjct: 144 DSYMNREVFKDKKLNKLWTKAELAGFS 170

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158291722|ref|XP_313261.4| AGAP003521-PA [Anopheles gambiae str. PEST] gi|157017425|gb|EAA08810.4| AGAP003521-PA [Anopheles gambiae str. PEST]

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 119/171 (69%), Gaps = 14/171 (8%)

Query: 4   LCVFALLYTVAVSSENIYSRESNVRFKSQLDVEPNIQL-----RHLDNPFRMGKLNLLWK 58
           LCV  +++TV V +  + S +++ ++    +  P+ ++     R++  PFRM KLNL+W 
Sbjct: 7   LCV--IVFTVLVCNHVVQSEKAHSKYSKHANALPDSEIYEPDFRNIQRPFRMAKLNLVWT 64

Query: 59  KAQVRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLL 118
           KAQ RL+EPKLKS+Y ELK+HDKEE+ +K++K    D DG +E  LR +LV IMSTYGLL
Sbjct: 65  KAQHRLTEPKLKSLYTELKLHDKEELTYKQLKEK--DKDGLKEAELRNKLVSIMSTYGLL 122

Query: 119 EHFEDIQG-EKIKL-DTDDNAP---VHKPRAVFKDKKLNKLWEKAEHSGFT 164
           EHF+D Q  EK KL  + D AP    +K +++FKDKKLNKLW+KAE +GFT
Sbjct: 123 EHFDDTQDPEKYKLAKSSDGAPKKDTYKNKSLFKDKKLNKLWDKAESAGFT 173

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019740|ref|XP_002430317.1| alpha-2-macroglobulin receptor-associated protein precursor, putative [Pediculus humanus corporis] gi|212515432|gb|EEB17579.1| alpha-2-macroglobulin receptor-associated protein precursor, putative [Pediculus humanus corporis]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/159 (50%), Positives = 116/159 (72%), Gaps = 4/159 (2%)

Query: 21  YSRESNVRFKSQLDV-EPNIQLRHLDNPFRMGKLNLLWKKAQVRLSEPKLKSIYNELKIH 79
           YS E+N++   +  V  PN+  R LD PFRM KLNLLW KAQ RL++ KLKS++++LKIH
Sbjct: 24  YSAEANLKPPDKPWVLNPNVNFRTLDKPFRMAKLNLLWSKAQRRLTDVKLKSLFSDLKIH 83

Query: 80  DKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQG-EKIKLDTDDNAP 138
           DKEEI +K+ K+DG D DG +E  LR++L+GIMSTY LLEHF+D+   +K+K+    N P
Sbjct: 84  DKEEIAWKRFKSDGNDKDGLKEAELREKLIGIMSTYSLLEHFQDVNDPKKVKVYKAMNDP 143

Query: 139 --VHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
              +  +++FKDK+LN+LWEKAE +GFT + ++  ++E 
Sbjct: 144 SISYINKSLFKDKRLNQLWEKAEKAGFTAEELQALHEEF 182

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195113151|ref|XP_002001132.1| GI10613 [Drosophila mojavensis] gi|193917726|gb|EDW16593.1| GI10613 [Drosophila mojavensis]

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 85/159 (53%), Positives = 111/159 (69%), Gaps = 4/159 (2%)

Query: 21  YSRESNV-RFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQVRLSEPKLKSIYNELKIH 79
           YS+E+N   FK  +D +   ++R+L  PFR+ KLNL+W KAQ RL+E K+KS+Y ELKIH
Sbjct: 33  YSKEANSPHFKQVIDEKYEPEIRNLQRPFRIAKLNLIWSKAQSRLTETKIKSLYMELKIH 92

Query: 80  DKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQG-EKIK--LDTDDN 136
           DKEEI +K++ +   D DG +E  LR++L+GIMSTY LLEHFED Q  EK K      D 
Sbjct: 93  DKEEIAWKQLNSQHKDKDGLKENELRQKLIGIMSTYDLLEHFEDTQDVEKTKPFKKFHDP 152

Query: 137 APVHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
              HK +++FKDKKLN+LWEKAE SGFT + +K   QE 
Sbjct: 153 EERHKNKSLFKDKKLNRLWEKAEISGFTAEEMKSLKQEF 191

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856901|ref|XP_003703945.1| PREDICTED: alpha-2-macroglobulin receptor-associated protein-like [Megachile rotundata]

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 117/165 (70%), Gaps = 8/165 (4%)

Query: 3   ILCVFALLYTVAVSSENIYSRESN-VRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQ 61
            LC   LL+ ++V++ N YS E+N  +++  L   PN  LR LD PFRM KLN+LW KA+
Sbjct: 12  FLC--GLLFHISVAA-NKYSAEANKPKYEDPLQF-PN-SLRELDKPFRMAKLNILWVKAK 66

Query: 62  VRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHF 121
            RL+E KL+SI+++LKIHDKEEI +K  K+DG DP+G+ E  LRK+L+GIMSTYGLLEHF
Sbjct: 67  NRLTESKLQSIFSDLKIHDKEEIAYKHFKSDGKDPNGEEEARLRKKLIGIMSTYGLLEHF 126

Query: 122 EDIQGEKI--KLDTDDNAPVHKPRAVFKDKKLNKLWEKAEHSGFT 164
            D +  ++  K    ++   +  + VFKDK+LNKLW KAE +GFT
Sbjct: 127 VDTENPELLKKHKALNDGSNYIAKDVFKDKRLNKLWAKAELAGFT 171

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195390925|ref|XP_002054117.1| GJ22967 [Drosophila virilis] gi|194152203|gb|EDW67637.1| GJ22967 [Drosophila virilis]

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 119/181 (65%), Gaps = 8/181 (4%)

Query: 3   ILCVFALLYTVAVSSENI----YSRESNV-RFKSQLDVEPNIQLRHLDNPFRMGKLNLLW 57
           +  +F L+ T  V ++      YS+E+N   FK   + +   ++R+L  PFRM KLNL+W
Sbjct: 11  LTAIFLLIATQYVDADRKQSKKYSKEANSPHFKQVAEEKYEPEIRNLQRPFRMAKLNLIW 70

Query: 58  KKAQVRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGL 117
            KAQ RL+E K+KS+Y ELKIHDKEEI +K++ +   D DG +   LR++L+GIMS+Y L
Sbjct: 71  SKAQNRLTESKIKSLYMELKIHDKEEIAWKQLNSQHKDKDGLKANELRQKLIGIMSSYDL 130

Query: 118 LEHFEDIQ-GEKIK--LDTDDNAPVHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQE 174
           LEHFED Q  EKIK      D    HK +++FKDKKLN+LWEKAE SGFT + +K   QE
Sbjct: 131 LEHFEDTQDAEKIKPFKKFHDPEERHKNKSLFKDKKLNRLWEKAEISGFTAEELKSLKQE 190

Query: 175 L 175
            
Sbjct: 191 F 191

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195454331|ref|XP_002074193.1| GK12751 [Drosophila willistoni] gi|194170278|gb|EDW85179.1| GK12751 [Drosophila willistoni]

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 88/179 (49%), Positives = 118/179 (65%), Gaps = 6/179 (3%)

Query: 3   ILCVFALLYTVAVSSENI--YSRESN-VRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKK 59
           I  VFA+L   A   +    YSRE+N   FK  ++ + +   +++  P+RM KLNLLW K
Sbjct: 8   IAIVFAVLQCAAADKKESKKYSREANDPHFKQVVEEKYDPDFKNIQRPYRMAKLNLLWSK 67

Query: 60  AQVRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLE 119
           AQ RL+EPKLKS+Y ELKIHDKEEI +K++ +   D DG +   LR +L+GIMSTY LLE
Sbjct: 68  AQNRLTEPKLKSLYMELKIHDKEEIAWKQLNSQHKDKDGLKANDLRLKLIGIMSTYDLLE 127

Query: 120 HFEDIQ-GEKIK--LDTDDNAPVHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
           HF+D Q  EK++      D    H+ +++FKDKKLN+LWEKAE SGFT + +K   QE 
Sbjct: 128 HFDDTQDAEKLQPFKKFHDPEERHRNKSLFKDKKLNRLWEKAEISGFTSEELKSLKQEF 186

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002092|gb|EEZ98539.1| hypothetical protein TcasGA2_TC001043 [Tribolium castaneum]

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 86/177 (48%), Positives = 114/177 (64%), Gaps = 19/177 (10%)

Query: 3   ILCVFALLYTVAVSSENIYSRESNVRFKSQLDVE-PNIQLRHLDNPFRMGKLNLLWKKAQ 61
           I+ V  + ++      N YS E+NV+ KS  DV+   + L+HLD PFRM KLNLLW KA 
Sbjct: 8   IIGVLIVSFSSISHCHNKYSAEANVK-KSNDDVDFRPVSLKHLDKPFRMAKLNLLWSKAV 66

Query: 62  VRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHF 121
           VRLSEPKLKS++ ELK+HDKEEI +K +KA+G D DG +E  LRK+L+ IM +Y LL+  
Sbjct: 67  VRLSEPKLKSLFGELKLHDKEEITWKHLKAEGKDKDGLKEAELRKKLLTIMGSYNLLDQA 126

Query: 122 EDIQGEKIKLDTDDNAPVHKP----------RAVFKDKKLNKLWEKAEHSGFTCKNV 168
           +D+Q              HKP          +++FKDKKLNKLWEKAE +GFT + +
Sbjct: 127 DDVQDPS-------KYRAHKPLNEASDKYINKSLFKDKKLNKLWEKAETAGFTAEEL 176

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234591|ref|XP_974877.2| PREDICTED: similar to CG8507 CG8507-PA [Tribolium castaneum]

 Score =  151 bits (382), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 86/177 (48%), Positives = 114/177 (64%), Gaps = 19/177 (10%)

Query: 3   ILCVFALLYTVAVSSENIYSRESNVRFKSQLDVE-PNIQLRHLDNPFRMGKLNLLWKKAQ 61
           I+ V  + ++      N YS E+NV+ KS  DV+   + L+HLD PFRM KLNLLW KA 
Sbjct: 8   IIGVLIVSFSSISHCHNKYSAEANVK-KSNDDVDFRPVSLKHLDKPFRMAKLNLLWSKAV 66

Query: 62  VRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHF 121
           VRLSEPKLKS++ ELK+HDKEEI +K +KA+G D DG +E  LRK+L+ IM +Y LL+  
Sbjct: 67  VRLSEPKLKSLFGELKLHDKEEITWKHLKAEGKDKDGLKEAELRKKLLTIMGSYNLLDQA 126

Query: 122 EDIQGEKIKLDTDDNAPVHKP----------RAVFKDKKLNKLWEKAEHSGFTCKNV 168
           +D+Q              HKP          +++FKDKKLNKLWEKAE +GFT + +
Sbjct: 127 DDVQDPS-------KYRAHKPLNEASDKYINKSLFKDKKLNKLWEKAETAGFTAEEL 176

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110755689|ref|XP_395004.3| PREDICTED: alpha-2-macroglobulin receptor-associated protein-like [Apis mellifera]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 115/168 (68%), Gaps = 6/168 (3%)

Query: 4   LCVFALLYTVAVSSENIYSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQVR 63
           LC      T+A    N YS E+N + K +  ++    LR LD PFRM KLN+LW KA+ R
Sbjct: 13  LCTLLFYTTIAF---NKYSIEAN-KPKYEDPLQFPTSLRELDKPFRMAKLNILWIKAKNR 68

Query: 64  LSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFED 123
           L++ KL+SI+++LKIHDKEEI +K  K+DG DP+G+ E  LRK+L+GIMSTYGLLEHF+D
Sbjct: 69  LTDTKLQSIFSDLKIHDKEEIAYKHFKSDGKDPNGEEEARLRKKLIGIMSTYGLLEHFDD 128

Query: 124 IQGEKI--KLDTDDNAPVHKPRAVFKDKKLNKLWEKAEHSGFTCKNVK 169
            +  ++  K    ++   +  R +FKDK+L+KLW KAE +GFT + ++
Sbjct: 129 TENPELLKKHKALNDGTNYIARNIFKDKRLDKLWVKAEMAGFTHEELQ 176

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
FB|FBgn0037756	379	CG8507 [Drosophila melanogaste	0.88	0.406	0.512	2.4e-35
ZFIN|ZDB-GENE-030131-5871	345	lrpap1 "low density lipoprotei	0.868	0.440	0.340	1.5e-17
UNIPROTKB|F1NDD6	348	LRPAP1 "Uncharacterized protei	0.862	0.433	0.348	5.9e-17
UNIPROTKB|F1NU36	353	LRPAP1 "Uncharacterized protei	0.862	0.427	0.348	6.4e-17
UNIPROTKB|F1S8M9	355	LRPAP1 "Uncharacterized protei	0.748	0.369	0.375	5.4e-16
UNIPROTKB|F1PAG7	364	LRPAP1 "Uncharacterized protei	0.76	0.365	0.348	6e-16
UNIPROTKB|F6RBT3	362	LRPAP1 "Uncharacterized protei	0.651	0.314	0.412	9.9e-16
UNIPROTKB|P30533	357	LRPAP1 "Alpha-2-macroglobulin	0.8	0.392	0.371	2.6e-15
RGD|620700	360	Lrpap1 "low density lipoprotei	0.76	0.369	0.363	4.6e-15
MGI|MGI:96829	360	Lrpap1 "low density lipoprotei	0.76	0.369	0.363	5.9e-15

FB|FBgn0037756 CG8507 [Drosophila melanogaster (taxid:7227)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 81/158 (51%), Positives = 108/158 (68%)

Query:    21 YSRESNVRFKSQLDVEP-NIQLRHLDNPFRMGKLNLLWKKAQVRLSEPKLKSIYNELKIH 79
             YS+E+N     Q+  E  +   + +  PFRM KLNL+W KAQ RL+EPKLKS+Y ELKIH
Sbjct:    32 YSKEANDPHFQQVKQEKYDPDFKSIQRPFRMAKLNLVWAKAQNRLTEPKLKSLYMELKIH 91

Query:    80 DKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQG-EKIK--LDTDDN 136
             DKEEI +K++ +   D DG +   LR++L+GIMS+Y LLEHF+D Q  EK+K      D 
Sbjct:    92 DKEEIAWKQLNSQHKDKDGLKADELRRKLIGIMSSYDLLEHFDDTQDTEKLKPYKKFHDA 151

Query:   137 APVHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQE 174
                H+ +++FKDKKLN+LWEKAE SGFT + +K   QE
Sbjct:   152 EERHRNKSLFKDKKLNRLWEKAEISGFTAEELKSLKQE 189

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

ZFIN|ZDB-GENE-030131-5871 lrpap1 "low density lipoprotein receptor-related protein associated protein 1" [Danio rerio (taxid:7955)]

 Score = 216 (81.1 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 61/179 (34%), Positives = 103/179 (57%)

Query:     1 MKILCVFALLYTVAVSSENIYSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKA 60
             M++L + +L    A++ +  YS+E N +  S    + N Q+      FR+ KLN +W+KA
Sbjct:     1 MQLLILVSLFAVGAMAGK--YSKEMNEKNASD---KSNSQVE-----FRIAKLNQVWEKA 50

Query:    61 -QVRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLE 119
              +++L+  +L  ++++LKI +K+E+ +KK+KA+G+D DG+RE  LR+    I++ YG+  
Sbjct:    51 IRMQLAPVRLSELHSDLKIQEKDELQWKKLKAEGMDEDGEREAKLRRNFNIILAKYGM-- 108

Query:   120 HFEDIQGEKIKLDTDDNA-PVHKPRA--VFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
                   G+K     D N    H+ +    F D KL+KLW KA  SG      KF+++EL
Sbjct:   109 -----DGKKDTRTLDSNRLKDHEVKVGDTFDDPKLDKLWNKARTSG------KFSDEEL 156

GO:0008201 "heparin binding" evidence=IEA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|F1NDD6 LRPAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 211 (79.3 bits), Expect = 5.9e-17, P = 5.9e-17
 Identities = 61/175 (34%), Positives = 97/175 (55%)

Query:     3 ILCVFALLYTVAVSSENIYSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQ- 61
             ++ V A    V+  +   Y+RE+N   +   D +     R     FR+ +LN +W+KAQ 
Sbjct:     7 LVAVIAAFLAVSARASK-YTREAN---EGLADAK-----RREAGEFRVVRLNQVWEKAQR 57

Query:    62 VRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHF 121
             ++LS  KL  ++++LKI +K+E+ +KK+KA+GLD DG++E  LR+ L  IM+ YG+    
Sbjct:    58 LQLSAVKLAELHSDLKIQEKDELSWKKLKAEGLDEDGEKEAKLRRNLNVIMTKYGM---- 113

Query:   122 EDIQGEKIKLDTDDNAPVHKPRA-VFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
                 G+K    TD N       +    D +L KLW KA+ SG      KF+++EL
Sbjct:   114 ---NGKKDSHLTDSNYIKDGTESDTLDDPRLEKLWSKAKTSG------KFSDEEL 159

GO:0008201 "heparin binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0010916 "negative regulation of very-low-density lipoprotein particle clearance" evidence=IEA

GO:0032091 "negative regulation of protein binding" evidence=IEA

GO:0048019 "receptor antagonist activity" evidence=IEA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA

GO:0070326 "very-low-density lipoprotein particle receptor binding" evidence=IEA

GO:1900222 "negative regulation of beta-amyloid clearance" evidence=IEA

UNIPROTKB|F1NU36 LRPAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 211 (79.3 bits), Expect = 6.4e-17, P = 6.4e-17
 Identities = 61/175 (34%), Positives = 97/175 (55%)

Query:     3 ILCVFALLYTVAVSSENIYSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQ- 61
             ++ V A    V+  +   Y+RE+N   +   D +     R     FR+ +LN +W+KAQ 
Sbjct:    12 LVAVIAAFLAVSARASK-YTREAN---EGLADAK-----RREAGEFRVVRLNQVWEKAQR 62

Query:    62 VRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHF 121
             ++LS  KL  ++++LKI +K+E+ +KK+KA+GLD DG++E  LR+ L  IM+ YG+    
Sbjct:    63 LQLSAVKLAELHSDLKIQEKDELSWKKLKAEGLDEDGEKEAKLRRNLNVIMTKYGM---- 118

Query:   122 EDIQGEKIKLDTDDNAPVHKPRA-VFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
                 G+K    TD N       +    D +L KLW KA+ SG      KF+++EL
Sbjct:   119 ---NGKKDSHLTDSNYIKDGTESDTLDDPRLEKLWSKAKTSG------KFSDEEL 164

GO:0008201 "heparin binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0010916 "negative regulation of very-low-density lipoprotein particle clearance" evidence=IEA

GO:0032091 "negative regulation of protein binding" evidence=IEA

GO:0048019 "receptor antagonist activity" evidence=IEA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA

GO:0070326 "very-low-density lipoprotein particle receptor binding" evidence=IEA

GO:1900222 "negative regulation of beta-amyloid clearance" evidence=IEA

UNIPROTKB|F1S8M9 LRPAP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 203 (76.5 bits), Expect = 5.4e-16, P = 5.4e-16
 Identities = 59/157 (37%), Positives = 85/157 (54%)

Query:    21 YSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQ-VRLSEPKLKSIYNELKIH 79
             YSRE N         EP    +     FR+ KLN LW+KAQ + LS  +L  ++ +LKI 
Sbjct:    35 YSREKN---------EPAPPSKRETGEFRIEKLNQLWEKAQRLNLSPVRLSELHADLKIQ 85

Query:    80 DKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAPV 139
             +++E  +KK+K++GLD DG++E  LR+ L  I++ YGL        G K  L T  N   
Sbjct:    86 ERDEFKWKKMKSEGLDEDGEKEAKLRRSLSVILAKYGL-------DGRKDTLST--NFLN 136

Query:   140 HKPRA-VFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
             H P     +D +L KLW +A  SG      KF+++EL
Sbjct:   137 HGPEDDSLEDPRLEKLWHRARASG------KFSSEEL 167

GO:1900222 "negative regulation of beta-amyloid clearance" evidence=IEA

GO:0070326 "very-low-density lipoprotein particle receptor binding" evidence=IEA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA

GO:0048019 "receptor antagonist activity" evidence=IEA

GO:0032091 "negative regulation of protein binding" evidence=IEA

GO:0010916 "negative regulation of very-low-density lipoprotein particle clearance" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

UNIPROTKB|F1PAG7 LRPAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 203 (76.5 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 55/158 (34%), Positives = 89/158 (56%)

Query:    21 YSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQ-VRLSEPKLKSIYNELKIH 79
             YSRE N     + ++ P    R     FRM KLN LW+KAQ ++LS  KL  ++ +LK+ 
Sbjct:    41 YSREKN-----EPELPPK---RESGGEFRMEKLNQLWEKAQRLQLSPVKLSELHADLKMQ 92

Query:    80 DKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGL--LEHFEDIQGEKIKLDTDDNA 137
             +++E  +KK+KA+GLD DG+++  L + L  I++ YGL   +    +    +   T+D++
Sbjct:    93 ERDEFAWKKLKAEGLDEDGEKQAKLTRNLSVILAKYGLDGRKDARAVSSNSLSDATEDDS 152

Query:   138 PVHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
                      +D +L KLW KA+ SG      KF+++EL
Sbjct:   153 --------LEDPRLEKLWHKAKTSG------KFSSEEL 176

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|F6RBT3 LRPAP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 201 (75.8 bits), Expect = 9.9e-16, P = 9.9e-16
 Identities = 54/131 (41%), Positives = 75/131 (57%)

Query:    48 FRMGKLNLLWKKAQVRLSEP--KLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILR 105
             FRM KLN LW+KAQ RL+ P  KL  ++ +LKI +++E  +KK+KA+GLD DG+ E  L 
Sbjct:    58 FRMEKLNQLWEKAQ-RLNLPPLKLSDLHTDLKIQERDEFKWKKLKAEGLDEDGEEEAKLV 116

Query:   106 KRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAPVHKPR-AVFKDKKLNKLWEKAEHSGFT 164
             + L  I++ YGL        G K       N   H P     +D +L KLW KA+ SG  
Sbjct:   117 RSLSVILAKYGL-------DGRKDSRVVSSNFVDHGPDDESLEDPRLEKLWHKAKTSG-- 167

Query:   165 CKNVKFNNQEL 175
                 KF+++EL
Sbjct:   168 ----KFSSEEL 174

GO:1900222 "negative regulation of beta-amyloid clearance" evidence=IEA

GO:0070326 "very-low-density lipoprotein particle receptor binding" evidence=IEA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA

GO:0048019 "receptor antagonist activity" evidence=IEA

GO:0032091 "negative regulation of protein binding" evidence=IEA

GO:0010916 "negative regulation of very-low-density lipoprotein particle clearance" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

UNIPROTKB|P30533 LRPAP1 "Alpha-2-macroglobulin receptor-associated protein" [Homo sapiens (taxid:9606)]

 Score = 197 (74.4 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 61/164 (37%), Positives = 83/164 (50%)

Query:    14 AVSSENIYSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQVRLSEP--KLKS 71
             A S    YSRE N     Q    P    R     FRM KLN LW+KAQ RL  P  +L  
Sbjct:    28 AASHGGKYSREKN-----QPKPSPK---RESGEEFRMEKLNQLWEKAQ-RLHLPPVRLAE 78

Query:    72 IYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKL 131
             ++ +LKI +++E+ +KK+K DGLD DG++E  L + L  I++ YGL        G+K   
Sbjct:    79 LHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGL-------DGKKDAR 131

Query:   132 DTDDNAPVHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
                 N+          D +L KLW KA+ SG      KF+ +EL
Sbjct:   132 QVTSNSLSGTQEDGLDDPRLEKLWHKAKTSG------KFSGEEL 169

GO:0008201 "heparin binding" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

GO:0035473 "lipase binding" evidence=IEA

GO:0048237 "rough endoplasmic reticulum lumen" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0004873 "asialoglycoprotein receptor activity" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0070326 "very-low-density lipoprotein particle receptor binding" evidence=IPI

GO:0032091 "negative regulation of protein binding" evidence=IDA

GO:0048019 "receptor antagonist activity" evidence=IDA

GO:0010916 "negative regulation of very-low-density lipoprotein particle clearance" evidence=IDA

GO:1900222 "negative regulation of beta-amyloid clearance" evidence=IGI

GO:0005576 "extracellular region" evidence=IDA

GO:1900116 "extracellular negative regulation of signal transduction" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

RGD|620700 Lrpap1 "low density lipoprotein receptor-related protein associated protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 195 (73.7 bits), Expect = 4.6e-15, P = 4.6e-15
 Identities = 57/157 (36%), Positives = 83/157 (52%)

Query:    21 YSRESNVRFKSQLDVEPNIQL-RHLDNPFRMGKLNLLWKKAQ-VRLSEPKLKSIYNELKI 78
             YSRE N         EP +   R     FRM KLN LW+KA+ + LS  +L  ++++LKI
Sbjct:    38 YSREKN---------EPEMAAKRESGEEFRMEKLNQLWEKAKRLHLSPVRLAELHSDLKI 88

Query:    79 HDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAP 138
              +++E+ +KK+K +GLD DG++E  L   L  I++ YGL        G K       NA 
Sbjct:    89 QERDELNWKKLKVEGLDGDGEKEAKLVHNLNVILARYGL-------DGRKDTQTVHSNAL 141

Query:   139 VHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
                 +    D +L KLW KA+ SG      KF+++EL
Sbjct:   142 NEDTQDELGDPRLEKLWHKAKTSG------KFSSEEL 172

GO:0005576 "extracellular region" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008201 "heparin binding" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0010916 "negative regulation of very-low-density lipoprotein particle clearance" evidence=IEA;ISO

GO:0031982 "vesicle" evidence=IDA

GO:0032091 "negative regulation of protein binding" evidence=IEA;ISO

GO:0035473 "lipase binding" evidence=IPI

GO:0048019 "receptor antagonist activity" evidence=IEA;ISO

GO:0048237 "rough endoplasmic reticulum lumen" evidence=IDA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA;ISO

GO:0070326 "very-low-density lipoprotein particle receptor binding" evidence=IEA;ISO

GO:1900116 "extracellular negative regulation of signal transduction" evidence=ISO

GO:1900222 "negative regulation of beta-amyloid clearance" evidence=IEA;ISO

MGI|MGI:96829 Lrpap1 "low density lipoprotein receptor-related protein associated protein 1" [Mus musculus (taxid:10090)]

 Score = 194 (73.4 bits), Expect = 5.9e-15, P = 5.9e-15
 Identities = 57/157 (36%), Positives = 83/157 (52%)

Query:    21 YSRESNVRFKSQLDVEPNIQL-RHLDNPFRMGKLNLLWKKAQ-VRLSEPKLKSIYNELKI 78
             YSRE N         EP +   R     FRM KLN LW+KA+ + LS  +L  ++++LKI
Sbjct:    38 YSREKN---------EPEMAAKRESGEEFRMEKLNQLWEKAKRLHLSPVRLAELHSDLKI 88

Query:    79 HDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAP 138
              +++E+ +KK+K +GLD DG++E  L   L  I++ YGL        G K       NA 
Sbjct:    89 QERDELNWKKLKVEGLDKDGEKEAKLIHNLNVILARYGL-------DGRKDAQMVHSNAL 141

Query:   139 VHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
                 +    D +L KLW KA+ SG      KF+++EL
Sbjct:   142 NEDTQDELGDPRLEKLWHKAKTSG------KFSSEEL 172


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.137   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      175       175   0.00078  109 3  11 22  0.42    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  158 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  19.01u 0.11s 19.12t   Elapsed:  00:00:07
  Total cpu time:  19.02u 0.11s 19.13t   Elapsed:  00:00:08
  Start:  Thu Aug 15 16:39:08 2013   End:  Thu Aug 15 16:39:16 2013

GO:0005576 "extracellular region" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0008201 "heparin binding" evidence=IEA

GO:0010916 "negative regulation of very-low-density lipoprotein particle clearance" evidence=ISO

GO:0031982 "vesicle" evidence=ISO

GO:0032091 "negative regulation of protein binding" evidence=ISO

GO:0035473 "lipase binding" evidence=ISO

GO:0048019 "receptor antagonist activity" evidence=ISO

GO:0048237 "rough endoplasmic reticulum lumen" evidence=ISO

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=ISO;IPI

GO:0070326 "very-low-density lipoprotein particle receptor binding" evidence=ISO

GO:1900116 "extracellular negative regulation of signal transduction" evidence=ISO

GO:1900222 "negative regulation of beta-amyloid clearance" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	175
pfam06400	121	pfam06400, Alpha-2-MRAP_N, Alpha-2-macroglobulin R	2e-30

>gnl|CDD|148168 pfam06400, Alpha-2-MRAP_N, Alpha-2-macroglobulin RAP, N-terminal domain

 Score =  106 bits (267), Expect = 2e-30
 Identities = 53/120 (44%), Positives = 77/120 (64%), Gaps = 12/120 (10%)

Query: 1   MKILCVFALLYTVAVSSE-NIYSRESNVRFKSQLDVEP-NIQLRHLDNPFRMGKLNLLWK 58
           + +L +  LL  +A +     YSRE+N         EP     R+    FRM KLN +W+
Sbjct: 1   LALLLLLLLLAVLAAAKHAGKYSREAN---------EPYAPDKRNSQREFRMAKLNQVWE 51

Query: 59  KAQ-VRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGL 117
           KAQ +RLSE KLK ++++LKI +K+E+ +KK+KA+GLD DG++E  LR++L  IMS YGL
Sbjct: 52  KAQRLRLSEVKLKELHSDLKIQEKDELAWKKLKAEGLDKDGEKEAKLRRKLNVIMSKYGL 111

The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family. The protein inhibits binding of all currently known ligands of these receptors. The N-terminal domain is predominately alpha helical. Two different studies have provided conflicted domain boundaries. Length = 121

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
KOG3956|consensus	359		100.0
PF06400	120	Alpha-2-MRAP_N: Alpha-2-macroglobulin RAP, N-termi	100.0
PF06401	214	Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-termi	99.93
KOG3956|consensus	359		99.81
PF06401	214	Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-termi	97.26
PF06400	120	Alpha-2-MRAP_N: Alpha-2-macroglobulin RAP, N-termi	91.83

>KOG3956|consensus

Probab=100.00  E-value=1.1e-44  Score=315.31  Aligned_cols=162  Identities=30%  Similarity=0.501  Sum_probs=141.1

Q ss_pred             hhhhhhhhcccCCCCCcchhhhcccccccCCCCCcccccCCCCccchhhhHHHHHHHHccCCHH-HHHHHHHHhhhhHHH
Q psy9493           4 LCVFALLYTVAVSSENIYSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQVRLSEP-KLKSIYNELKIHDKE   82 (175)
Q Consensus         4 ~~~~~~~~~~~~~~~~kys~e~n~~~~~~~~~~~~~~~~~~~~~FR~~KLN~LWeKAq~~fs~~-eL~~L~~ELk~qeK~   82 (175)
                      |.+.++|+|+++.+++|||+|+|.| +|      .|.+.++. ||||+|||+||+|||+++|++ .|++|+.||++||++
T Consensus        15 llll~~G~~~~kkqskKySkEaNdP-ky------dPdfkSiq-pFRmeklN~iweKAq~~~t~p~~La~L~~eLki~d~~   86 (359)
T KOG3956|consen   15 LLLLVIGSAHNKKQSKKYSKEANDP-KY------DPDFKSIQ-PFRMEKLNFIWEKAQQHVTDPQNLARLEKELKIYDAI   86 (359)
T ss_pred             HHHHHhCcccchhhccccchhccCC-CC------Cccccccc-hhHHHHHHHHHHHHHHhcCCHhHHHHHHHHhhhhhHH
Confidence            3445578999999999999999999 63      67777777 999999999999999977775 599999999999999


Q ss_pred             HHHHHhhhhcCCCCCchhHHHHHHHHHHHHHhhccccccchhhccccccccCCC---C-CCCCCCCCCCChhHHHHHHHH
Q psy9493          83 EILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDN---A-PVHKPRAVFKDKKLNKLWEKA  158 (175)
Q Consensus        83 e~~~k~LK~eg~D~dG~kEa~Lr~kl~~Il~kYgL~~~~~~~~~~~~~~h~~l~---d-~~~~~~~~F~DpKl~kLW~kA  158 (175)
                      +++||.|+..+.|.+|+++++|+|+|++||++|||.+++++++++  ..|+.+.   | ....+++.|.||+|++||++|
T Consensus        87 elAwK~lns~~~d~dg~k~d~l~rkL~~Il~kYgL~~~~da~q~t--~k~k~l~~~~d~~e~~~~~~f~D~~L~kLW~kA  164 (359)
T KOG3956|consen   87 ELAWKSLNSRQGDQDGKKIDKLDRKLGKILEKYGLEKAVDAFQET--YKHKNLFQQTDDNEPLPSGKFTDQNLQKLWSKA  164 (359)
T ss_pred             HHHHHHhhhcccCcchHHHHHHHHHHHHHHHHcchhhhhHHHHHH--HhccchhhcccccccCcccccCchhHHHHHHHH
Confidence            999999999999999999999999999999999999998877641  1222222   2 336678899999999999999


Q ss_pred             HhCCCCHHHHHHHhhhC
Q psy9493         159 EHSGFTCKNVKFNNQEL  175 (175)
Q Consensus       159 ~~sgFS~eEL~sLk~EL  175 (175)
                      ++||||.+||.+||.|+
T Consensus       165 ~~sgFs~eEL~~L~~Ef  181 (359)
T KOG3956|consen  165 QNSGFSQEELNALHGEF  181 (359)
T ss_pred             hccCCCHHHHHHHHHHH
Confidence            99999999999999985

>PF06400 Alpha-2-MRAP_N: Alpha-2-macroglobulin RAP, N-terminal domain; InterPro: IPR009066 The alpha-2-macroglobulin receptor-associated protein (RAP) is a glycoprotein that binds to the alpha-2-macroglobulin receptor, as well as to other members of the low density lipoprotein receptor family (IPR002172 from INTERPRO)

Probab=100.00  E-value=1.2e-41  Score=263.58  Aligned_cols=110  Identities=55%  Similarity=0.811  Sum_probs=70.6

Q ss_pred             hhhhhhhhhcccCCCCCcchhhhcccccccCCCCCcccccCCCCccchhhhHHHHHHHHc-cCCHHHHHHHHHHhhhhHH
Q psy9493           3 ILCVFALLYTVAVSSENIYSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQV-RLSEPKLKSIYNELKIHDK   81 (175)
Q Consensus         3 ~~~~~~~~~~~~~~~~~kys~e~n~~~~~~~~~~~~~~~~~~~~~FR~~KLN~LWeKAq~-~fs~~eL~~L~~ELk~qeK   81 (175)
                      ++|+++++++.++.+++|||||+|++ .       +|++|.++.||||+||||||+||++ +||+++|++||+||++|||
T Consensus         3 ~~~~ll~~~~~~~~~~~KYSre~Ne~-~-------~~~~~~~~~~FRm~KLN~lW~KA~r~~Ls~~kLk~L~~dLKi~dk   74 (120)
T PF06400_consen    3 LLLLLLLFPIAAVKAAGKYSREANEP-K-------PPSFRELDRPFRMAKLNQLWEKAQRLRLSEVKLKSLYSDLKIHDK   74 (120)
T ss_dssp             ----------------------------------------S---SSSSHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHhccccCHhhCCC-C-------CCccccccccHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhHH
Confidence            45666777777788899999999987 3       6789999999999999999999997 9999999999999999999


Q ss_pred             HHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHhhccccc
Q psy9493          82 EEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEH  120 (175)
Q Consensus        82 ~e~~~k~LK~eg~D~dG~kEa~Lr~kl~~Il~kYgL~~~  120 (175)
                      +|++||+||++|.|++|++||+||++|++||++|||.++
T Consensus        75 eEl~wKklk~~g~D~dG~kEa~Lrrkl~~Im~kYgL~g~  113 (120)
T PF06400_consen   75 EELAWKKLKAEGKDKDGEKEAELRRKLNVIMSKYGLDGK  113 (120)
T ss_dssp             HHHHHHHHHHHTS-SSSHHHHHHHHHHHHHHHHHTSSSS
T ss_pred             HHHHHHHHhhhCCCccccHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999864

RAP acts to inhibit the binding of all know ligands for these receptors, and may prevent receptor aggregation and degradation in the endoplasmic reticulum, thereby acting as a molecular chaperone []. RAP may be under the regulatory control of calmodulin, since it is able to bind calmodulin and be phosphorylated by calmodulin-dependent kinase II (IPR002048 from INTERPRO). RAP is comprised of three domains. Both domains 1 and 3 are involved in binding to the alpha-2-macroglobulin receptor, while domain 1 is also involved in inhibiting the binding of activated alpha-2-macroglobulin (IPR001599 from INTERPRO). Structural studies have revealed the RAP domain 1 to be comprised of a partly opened bundle of three helices, the first one being shorter than the other two.; PDB: 1NRE_A 2P03_A 1OV2_A 1LRE_A 2FYL_A 1OP1_A 2P01_A.

>PF06401 Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-terminal domain ; InterPro: IPR010483 The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family

Probab=99.93  E-value=6.3e-26  Score=191.05  Aligned_cols=116  Identities=21%  Similarity=0.336  Sum_probs=87.6

Q ss_pred             CccchhhhHHHHHHHHc-c-CCHHHHHHHHHHhhh-hHHHHHHHHhhhhcCC------------C-CC------chhHHH
Q psy9493          46 NPFRMGKLNLLWKKAQV-R-LSEPKLKSIYNELKI-HDKEEILFKKVKADGL------------D-PD------GQREGI  103 (175)
Q Consensus        46 ~~FR~~KLN~LWeKAq~-~-fs~~eL~~L~~ELk~-qeK~e~~~k~LK~eg~------------D-~d------G~kEa~  103 (175)
                      +.|.|+|||+||.||++ + ||+++|.+|+.||+| |+|+..|+..|...+.            + ..      ..+.+.
T Consensus         1 ~~F~D~kL~KLW~kA~~sGkFt~eEL~~Lk~Ef~hHqeKi~eY~~LL~~~~~~~~~~~N~i~~~~~~~~k~~~~~~k~~~   80 (214)
T PF06401_consen    1 DLFKDKKLNKLWHKAETSGKFTDEELDKLKEEFQHHQEKIDEYNSLLETLSRTEEIHENSISPNEMNPEKEEQLHEKHNE   80 (214)
T ss_dssp             -SS-SHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSS---S-TTTT-SSSSCHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCccccchhHHHHHHHHHHH
Confidence            47999999999999999 7 999999999999999 7788888887755221            1 01      236789


Q ss_pred             HHHHHHHHHHhhccccccchhhccccccccCCCCCCCCCCCCCCChhHHHHHHHHHhCCCCHHHHHHHhhhC
Q psy9493         104 LRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAPVHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL  175 (175)
Q Consensus       104 Lr~kl~~Il~kYgL~~~~~~~~~~~~~~h~~l~d~~~~~~~~F~DpKl~kLW~kA~~sgFS~eEL~sLk~EL  175 (175)
                      ||.+.+.|.+.|+-+..         ..+.     ++.+..+|++|||++||..|++++||++||+||++||
T Consensus        81 Lk~k~r~i~~~~drL~r---------~~~~-----g~~~~~eF~epkV~~LW~~A~~~nFT~~ELeSlkeEL  138 (214)
T PF06401_consen   81 LKEKHREINDGYDRLRR---------VSHQ-----GPNSDKEFIEPKVQGLWKLAQNANFTEDELESLKEEL  138 (214)
T ss_dssp             HHHHHHHHHHHHHHHHH---------HHHT-----SSSSS-SSSSTTHHHHHHHHCTTT--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---------HHhc-----CCCcccccccHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999977731         1122     2223378999999999999999999999999999997

The protein inhibits binding of all currently known ligands of these receptors []. Two different studies have provided conflicting domain boundaries.; GO: 0008201 heparin binding, 0050750 low-density lipoprotein particle receptor binding, 0005783 endoplasmic reticulum; PDB: 2FCW_A 2P03_A 2FTU_A 2P01_A.

>KOG3956|consensus

Probab=99.81  E-value=1e-19  Score=159.42  Aligned_cols=116  Identities=19%  Similarity=0.281  Sum_probs=88.0

Q ss_pred             CCccchhhhHHHHHHHHc-cCCHHHHHHHHHHhhh-hHHHHHHHHhhhhcCCCCC-------------------chhHHH
Q psy9493          45 DNPFRMGKLNLLWKKAQV-RLSEPKLKSIYNELKI-HDKEEILFKKVKADGLDPD-------------------GQREGI  103 (175)
Q Consensus        45 ~~~FR~~KLN~LWeKAq~-~fs~~eL~~L~~ELk~-qeK~e~~~k~LK~eg~D~d-------------------G~kEa~  103 (175)
                      .+.|.|.+||+||+||++ +||.++|.+|+.||+| ++|...|+..|..-..+++                   +.+.-+
T Consensus       149 ~~~f~D~~L~kLW~kA~~sgFs~eEL~~L~~Ef~hh~~Kv~vY~~lLe~~tv~~~~HEN~I~~~dlsDvneik~h~~~~k  228 (359)
T KOG3956|consen  149 SGKFTDQNLQKLWSKAQNSGFSQEELNALHGEFKHHEQKVRVYEDLLEDFTVKKVPHENSIQHDDLSDVNEIKIHDKTKK  228 (359)
T ss_pred             ccccCchhHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchhhhhhhhccccchHHH
Confidence            468999999999999999 9999999999999999 5677777777755311211                   123344


Q ss_pred             HHHHHHHHHHhhccccccchhhccccccccCCCCCCCCCCCCCCChhHHHHHHHHHhCCCCHHHHHHHhhhC
Q psy9493         104 LRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAPVHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL  175 (175)
Q Consensus       104 Lr~kl~~Il~kYgL~~~~~~~~~~~~~~h~~l~d~~~~~~~~F~DpKl~kLW~kA~~sgFS~eEL~sLk~EL  175 (175)
                      |..+...|.+.|+-+..             ..  .+++..++|.+|||++||..||.++||+.||++|++||
T Consensus       229 lke~~r~~n~glDrl~R-------------~v--~sg~h~~~F~EPrV~~LW~lAQ~~nlT~kELe~~k~EL  285 (359)
T KOG3956|consen  229 LKEANRELNDGLDRLHR-------------KV--TSGEHFSPFNEPRVKRLWKLAQENNLTPKELEVLKDEL  285 (359)
T ss_pred             HHHHHHHHHhhHHHHHH-------------Hh--ccCCcccccccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            55555555554433311             00  24567899999999999999999999999999999997

>PF06401 Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-terminal domain ; InterPro: IPR010483 The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family

Probab=97.26  E-value=0.00046  Score=58.95  Aligned_cols=44  Identities=34%  Similarity=0.431  Sum_probs=35.7

Q ss_pred             CCccchhhhHHHHHHHHc-cCCHHHHHHHHHHhhhhHHHHHHHHh
Q psy9493          45 DNPFRMGKLNLLWKKAQV-RLSEPKLKSIYNELKIHDKEEILFKK   88 (175)
Q Consensus        45 ~~~FR~~KLN~LWeKAq~-~fs~~eL~~L~~ELk~qeK~e~~~k~   88 (175)
                      +.+|..+|+..||.-|+. .||+.+|.+|+.||.|.|..-.....
T Consensus       106 ~~eF~epkV~~LW~~A~~~nFT~~ELeSlkeEL~HfE~rl~K~~H  150 (214)
T PF06401_consen  106 DKEFIEPKVQGLWKLAQNANFTEDELESLKEELKHFEKRLEKHRH  150 (214)
T ss_dssp             S-SSSSTTHHHHHHHHCTTT--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999 99999999999999998876443333

The protein inhibits binding of all currently known ligands of these receptors []. Two different studies have provided conflicting domain boundaries.; GO: 0008201 heparin binding, 0050750 low-density lipoprotein particle receptor binding, 0005783 endoplasmic reticulum; PDB: 2FCW_A 2P03_A 2FTU_A 2P01_A.

>PF06400 Alpha-2-MRAP_N: Alpha-2-macroglobulin RAP, N-terminal domain; InterPro: IPR009066 The alpha-2-macroglobulin receptor-associated protein (RAP) is a glycoprotein that binds to the alpha-2-macroglobulin receptor, as well as to other members of the low density lipoprotein receptor family (IPR002172 from INTERPRO)

Probab=91.83  E-value=0.14  Score=40.46  Aligned_cols=34  Identities=32%  Similarity=0.439  Sum_probs=27.3

Q ss_pred             CCCCCCChhHHHHHHHHHhCCCCHHHHHHHhhhC
Q psy9493         142 PRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL  175 (175)
Q Consensus       142 ~~~~F~DpKl~kLW~kA~~sgFS~eEL~sLk~EL  175 (175)
                      ...+|.=-|||.||.+|+...+|+--|.+|..||
T Consensus        36 ~~~~FRm~KLN~lW~KA~r~~Ls~~kLk~L~~dL   69 (120)
T PF06400_consen   36 LDRPFRMAKLNQLWEKAQRLRLSEVKLKSLYSDL   69 (120)
T ss_dssp             ---SSSSHHHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHccCChHHHHHHHHHH
Confidence            4568999999999999999999999999998875

RAP acts to inhibit the binding of all know ligands for these receptors, and may prevent receptor aggregation and degradation in the endoplasmic reticulum, thereby acting as a molecular chaperone []. RAP may be under the regulatory control of calmodulin, since it is able to bind calmodulin and be phosphorylated by calmodulin-dependent kinase II (IPR002048 from INTERPRO). RAP is comprised of three domains. Both domains 1 and 3 are involved in binding to the alpha-2-macroglobulin receptor, while domain 1 is also involved in inhibiting the binding of activated alpha-2-macroglobulin (IPR001599 from INTERPRO). Structural studies have revealed the RAP domain 1 to be comprised of a partly opened bundle of three helices, the first one being shorter than the other two.; PDB: 1NRE_A 2P03_A 1OV2_A 1LRE_A 2FYL_A 1OP1_A 2P01_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	175
2p01_A	323	The Structure Of Receptor-Associated Protein(Rap) L		7e-14
1ov2_A	99	Ensemble Of The Solution Structures Of Domain One O		1e-10
1op1_A	82	Solution Nmr Structure Of Domain 1 Of Receptor Asso		2e-10
1lre_A	81	Receptor Associated Protein (Rap) Domain 1, Nmr, 20		2e-10

>pdb|2P01|A Chain A, The Structure Of Receptor-Associated Protein(Rap) Length = 323

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 81/157 (51%), Gaps = 24/157 (15%)
Query: 21  YSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQVRLSEP--KLKSIYNELKI 78
           YSRE N     Q    P    R     FRM KLN LW+KAQ RL  P  +L  ++ +LKI
Sbjct: 1   YSREKN-----QPKPSPK---RESGEEFRMEKLNQLWEKAQ-RLHLPPVRLAELHADLKI 51
Query: 79  HDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAP 138
            +++E+ +KK+K DGLD DG++E  L + L  I++ YGL        G+K       N+ 
Sbjct: 52  QERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGL-------DGKKDARQVTSNSL 104
Query: 139 VHKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
                    D +L KLW KA+ SG      KF+ +EL
Sbjct: 105 SGTQEDGLDDPRLEKLWHKAKTSG------KFSGEEL 135

>pdb|1OV2|A Chain A, Ensemble Of The Solution Structures Of Domain One Of Receptor Associated Protein Length = 99

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 58/98 (59%), Gaps = 9/98 (9%)
Query: 21  YSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQ-VRLSEPKLKSIYNELKIH 79
           YSRE N     Q    P    R     FRM KLN LW+KAQ + L   +L  ++ +LKI 
Sbjct: 1   YSREKN-----QPKPSPK---RESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQ 52
Query: 80  DKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGL 117
           +++E+ +KK+K DGLD DG++E  L + L  I++ YGL
Sbjct: 53  ERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGL 90

>pdb|1OP1|A Chain A, Solution Nmr Structure Of Domain 1 Of Receptor Associated Protein Length = 82

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 48  FRMGKLNLLWKKAQVRLSEP--KLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILR 105
           FRM KLN LW+KAQ RL  P  +L  ++ +LKI +++E+ +KK+K DGLD DG++E  L 
Sbjct: 4   FRMEKLNQLWEKAQ-RLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLI 62
Query: 106 KRLVGIMSTYGL 117
           + L  I++ YGL
Sbjct: 63  RNLNVILAKYGL 74

>pdb|1LRE|A Chain A, Receptor Associated Protein (Rap) Domain 1, Nmr, 20 Structures Length = 81

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 48  FRMGKLNLLWKKAQVRLSEP--KLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILR 105
           FRM KLN LW+KAQ RL  P  +L  ++ +LKI +++E+ +KK+K DGLD DG++E  L 
Sbjct: 4   FRMEKLNQLWEKAQ-RLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLI 62
Query: 106 KRLVGIMSTYGL 117
           + L  I++ YGL
Sbjct: 63  RNLNVILAKYGL 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	175
2p01_A	323	Alpha-2-macroglobulin receptor-associated protein;	9e-31
1ov2_A	99	Alpha-2-macroglobulin receptor-associated protein	8e-30
1lre_A	81	Receptor-associated protein; low density lipoprote	5e-26

>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A Length = 323

 Score =  112 bits (282), Expect = 9e-31
 Identities = 54/156 (34%), Positives = 77/156 (49%), Gaps = 22/156 (14%)

Query: 21  YSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQ-VRLSEPKLKSIYNELKIH 79
           YSRE N               R     FRM KLN LW+KAQ + L   +L  ++ +LKI 
Sbjct: 1   YSREKNQ--------PKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQ 52

Query: 80  DKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAPV 139
           +++E+ +KK+K DGLD DG++E  L + L  I++ YGL    +  Q          N+  
Sbjct: 53  ERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQVT-------SNSLS 105

Query: 140 HKPRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL 175
                   D +L KLW KA+ SG      KF+ +EL
Sbjct: 106 GTQEDGLDDPRLEKLWHKAKTSG------KFSGEEL 135

>1ov2_A Alpha-2-macroglobulin receptor-associated protein precursor; helical protein; NMR {Homo sapiens} SCOP: a.13.1.1 Length = 99

 Score =  103 bits (259), Expect = 8e-30
 Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 9/106 (8%)

Query: 21  YSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQ-VRLSEPKLKSIYNELKIH 79
           YSRE N               R     FRM KLN LW+KAQ + L   +L  ++ +LKI 
Sbjct: 1   YSREKNQ--------PKPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQ 52

Query: 80  DKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHFEDIQ 125
           +++E+ +KK+K DGLD DG++E  L + L  I++ YGL    +  Q
Sbjct: 53  ERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQ 98

>1lre_A Receptor-associated protein; low density lipoprotein receptor family associated protein, LDLR family associated protein, helix bundle; NMR {Homo sapiens} SCOP: a.13.1.1 PDB: 1nre_A 2fyl_A 1op1_A Length = 81

 Score = 93.9 bits (233), Expect = 5e-26
 Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 48  FRMGKLNLLWKKAQ-VRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRK 106
           FRM KLN LW+KAQ + L   +L  ++ +LKI +++E+ +KK+K DGLD DG++E  L +
Sbjct: 4   FRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLIR 63

Query: 107 RLVGIMSTYGLLEHFE 122
            L  I++ YGL    +
Sbjct: 64  NLNVILAKYGLDGKKD 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
2p01_A	323	Alpha-2-macroglobulin receptor-associated protein;	100.0
1ov2_A	99	Alpha-2-macroglobulin receptor-associated protein	100.0
1lre_A	81	Receptor-associated protein; low density lipoprote	99.97
2p01_A	323	Alpha-2-macroglobulin receptor-associated protein;	99.92
2fcw_A	109	Alpha-2-macroglobulin receptor-associated protein;	97.81
1lre_A	81	Receptor-associated protein; low density lipoprote	93.29
1ov2_A	99	Alpha-2-macroglobulin receptor-associated protein	91.35

>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A

Probab=100.00  E-value=3.3e-47  Score=332.76  Aligned_cols=139  Identities=36%  Similarity=0.573  Sum_probs=128.1

Q ss_pred             chhhhcccccccCCCCCcccccCCCCccchhhhHHHHHHHHc-cCCHHHHHHHHHHhhhhHHHHHHHHhhhhcCCCCCch
Q psy9493          21 YSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQV-RLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQ   99 (175)
Q Consensus        21 ys~e~n~~~~~~~~~~~~~~~~~~~~~FR~~KLN~LWeKAq~-~fs~~eL~~L~~ELk~qeK~e~~~k~LK~eg~D~dG~   99 (175)
                      ||+|||.|        |+||+|+++.||||+|||+||+||++ +||+++|++||+||++|||+|++||+||++|+|++|+
T Consensus         1 ys~e~n~p--------~~~~~~~~~~pFRm~KLN~lW~KA~~~~Lt~~kLk~l~~eLki~dkeElawK~lKa~g~DkdG~   72 (323)
T 2p01_A            1 YSREKNQP--------KPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGE   72 (323)
T ss_dssp             CCCCCCCC--------CCCCCCSCCCCSSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSCH
T ss_pred             CchhcCCC--------CCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccc
Confidence            99999998        47899999999999999999999998 9999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhccccccchhhc-cccccccCCCCCCCCCCCCCCChhHHHHHHHHHhCC-CCHHHHHHHhhhC
Q psy9493         100 REGILRKRLVGIMSTYGLLEHFEDIQG-EKIKLDTDDNAPVHKPRAVFKDKKLNKLWEKAEHSG-FTCKNVKFNNQEL  175 (175)
Q Consensus       100 kEa~Lr~kl~~Il~kYgL~~~~~~~~~-~~~~~h~~l~d~~~~~~~~F~DpKl~kLW~kA~~sg-FS~eEL~sLk~EL  175 (175)
                      +||+||++|++||++|||.+    +.| .+++++    +.++.+++.|+||||++||++|++|| ||++||++||+||
T Consensus        73 kEaeLr~kL~~Il~kYgL~~----~~d~~k~k~~----~~~~~~~~~F~D~kL~KLW~kA~~sGkFs~eEL~~Lk~Ef  142 (323)
T 2p01_A           73 KEARLIRNLNVILAKYGLDG----KKDARQVTSN----SLSGTQEDGLDDPRLEKLWHKAKTSGKFSGEELDKLWREF  142 (323)
T ss_dssp             HHHHHHHHHHHHHHHHTCCC----CCCCCCSCCC----CCCCSCCCSCCSHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCc----ccchhhcccc----ccccccccccCChhHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            99999999999999999974    333 344444    23578899999999999999999999 9999999999996

>1ov2_A Alpha-2-macroglobulin receptor-associated protein precursor; helical protein; NMR {Homo sapiens} SCOP: a.13.1.1

Probab=100.00  E-value=3.5e-38  Score=235.27  Aligned_cols=91  Identities=43%  Similarity=0.664  Sum_probs=73.9

Q ss_pred             chhhhcccccccCCCCCcccccCCCCccchhhhHHHHHHHHc-cCCHHHHHHHHHHhhhhHHHHHHHHhhhhcCCCCCch
Q psy9493          21 YSRESNVRFKSQLDVEPNIQLRHLDNPFRMGKLNLLWKKAQV-RLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQ   99 (175)
Q Consensus        21 ys~e~n~~~~~~~~~~~~~~~~~~~~~FR~~KLN~LWeKAq~-~fs~~eL~~L~~ELk~qeK~e~~~k~LK~eg~D~dG~   99 (175)
                      ||||+|.|        |+||+|+++.||||+|||+||+|||+ +||+++|++||+||++|||+|++||+||++|.|+||+
T Consensus         1 YS~e~N~p--------~~~s~r~~~~pFRmaKLN~lW~KAq~~~Ls~~KLk~l~~dLKi~dKeElawKklk~~gkDkdG~   72 (99)
T 1ov2_A            1 YSREKNQP--------KPSPKRESGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGE   72 (99)
T ss_dssp             ------------------------CCSSSCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSCH
T ss_pred             CchhhcCC--------CCccccccccchHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhHHHHHHHHHHhhcCCccch
Confidence            99999998        37899999999999999999999998 9999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhcccc
Q psy9493         100 REGILRKRLVGIMSTYGLLE  119 (175)
Q Consensus       100 kEa~Lr~kl~~Il~kYgL~~  119 (175)
                      +||+||++|++||++|||.+
T Consensus        73 kEa~LR~kl~~Il~~ygLd~   92 (99)
T 1ov2_A           73 KEARLIRNLNVILAKYGLDG   92 (99)
T ss_dssp             HHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999974

>1lre_A Receptor-associated protein; low density lipoprotein receptor family associated protein, LDLR family associated protein, helix bundle; NMR {Homo sapiens} SCOP: a.13.1.1 PDB: 1nre_A 2fyl_A 1op1_A

Probab=99.97  E-value=2.3e-32  Score=197.64  Aligned_cols=75  Identities=44%  Similarity=0.729  Sum_probs=73.0

Q ss_pred             CCccchhhhHHHHHHHHc-cCCHHHHHHHHHHhhhhHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHhhcccc
Q psy9493          45 DNPFRMGKLNLLWKKAQV-RLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLE  119 (175)
Q Consensus        45 ~~~FR~~KLN~LWeKAq~-~fs~~eL~~L~~ELk~qeK~e~~~k~LK~eg~D~dG~kEa~Lr~kl~~Il~kYgL~~  119 (175)
                      ++||||+|||+||+|||+ +||+++|++||+||++|||+|++||+||++|.|+||++||+||++|++||++|||.+
T Consensus         1 ~~pFRm~KLN~lW~KA~~~~L~~~KLk~l~~dLKi~dKeElawKklk~~gkDkdG~kEa~LR~kl~~Il~~ygLd~   76 (81)
T 1lre_A            1 GEEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGLDG   76 (81)
T ss_dssp             CCSSSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTSSHHHHHHHHHHHHHHHHCSSC
T ss_pred             CCcchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHhCCCc
Confidence            469999999999999998 999999999999999999999999999999999999999999999999999999974

>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A

Probab=99.92  E-value=2e-25  Score=195.38  Aligned_cols=117  Identities=19%  Similarity=0.299  Sum_probs=95.7

Q ss_pred             CCCccchhhhHHHHHHHHc-c-CCHHHHHHHHHHhhh-hHHHHHHHHhhhhcC----CCCC--------c----h---hH
Q psy9493          44 LDNPFRMGKLNLLWKKAQV-R-LSEPKLKSIYNELKI-HDKEEILFKKVKADG----LDPD--------G----Q---RE  101 (175)
Q Consensus        44 ~~~~FR~~KLN~LWeKAq~-~-fs~~eL~~L~~ELk~-qeK~e~~~k~LK~eg----~D~d--------G----~---kE  101 (175)
                      ..++|.|+|||+||+||++ + ||+++|++|+.||+| |+|+.+||..|...+    ..++        .    .   +-
T Consensus       108 ~~~~F~D~kL~KLW~kA~~sGkFs~eEL~~Lk~Ef~HHqeKv~eY~~LLe~~~~~~~~heN~I~~~~~~~~~E~~~~~k~  187 (323)
T 2p01_A          108 QEDGLDDPRLEKLWHKAKTSGKFSGEELDKLWREFLHHKEKVHEYNVLLETLSRTEEIHENVISPSDLSDIKGSVLHSRH  187 (323)
T ss_dssp             CCCSCCSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCCCSCSSSCCSSSSHHHHH
T ss_pred             cccccCChhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCChhhhcchhhhhHHhhh
Confidence            3578999999999999999 7 999999999999999 788999999988743    1110        0    0   22


Q ss_pred             HHHHHHHHHHHHhhccccccchhhccccccccCCCCCCCCCCC-CCCChhHHHHHHHHHhCCCCHHHHHHHhhhC
Q psy9493         102 GILRKRLVGIMSTYGLLEHFEDIQGEKIKLDTDDNAPVHKPRA-VFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL  175 (175)
Q Consensus       102 a~Lr~kl~~Il~kYgL~~~~~~~~~~~~~~h~~l~d~~~~~~~-~F~DpKl~kLW~kA~~sgFS~eEL~sLk~EL  175 (175)
                      +.||.++++|.+.|+-+...         .|      +++..+ +|.+|||++||+.|++++||++||+||++||
T Consensus       188 ~~Lk~~~r~i~~~ydrL~rl---------~~------~g~~~~~eF~EPkVq~LW~lA~~~NFT~~ELeSlK~EL  247 (323)
T 2p01_A          188 TELKEKLRSINQGLDRLRRV---------SH------QGYSTEAEFEEPRVIDLWDLAQSANLTDKELEAFREEL  247 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---------HH------TSSCCSCSSCCTTHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHH---------Hh------cCCCcccCccChHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            78899999999988777321         11      234445 9999999999999999999999999999997

>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A

Probab=97.81  E-value=3.4e-05  Score=58.63  Aligned_cols=45  Identities=22%  Similarity=0.310  Sum_probs=39.3

Q ss_pred             CCccchhhhHHHHHHHHc-cCCHHHHHHHHHHhhhhHHHHHHHHhh
Q psy9493          45 DNPFRMGKLNLLWKKAQV-RLSEPKLKSIYNELKIHDKEEILFKKV   89 (175)
Q Consensus        45 ~~~FR~~KLN~LWeKAq~-~fs~~eL~~L~~ELk~qeK~e~~~k~L   89 (175)
                      +++|.-+|+.-||.-|+. .||+.||.+|+.||.|.|+.....+.+
T Consensus         1 ~~eF~EPkVq~LW~lA~~~NFT~~ELeSlK~EL~HfE~rl~K~rH~   46 (109)
T 2fcw_A            1 GAEFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHY   46 (109)
T ss_dssp             CCSCCSHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999 999999999999999998765544444

>1lre_A Receptor-associated protein; low density lipoprotein receptor family associated protein, LDLR family associated protein, helix bundle; NMR {Homo sapiens} SCOP: a.13.1.1 PDB: 1nre_A 2fyl_A 1op1_A

Probab=93.29  E-value=0.083  Score=38.05  Aligned_cols=32  Identities=31%  Similarity=0.464  Sum_probs=29.2

Q ss_pred             CCCCChhHHHHHHHHHhCCCCHHHHHHHhhhC
Q psy9493         144 AVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL  175 (175)
Q Consensus       144 ~~F~DpKl~kLW~kA~~sgFS~eEL~sLk~EL  175 (175)
                      .||.=.|||-||.+|+++-+|+--|.+|..||
T Consensus         2 ~pFRm~KLN~lW~KA~~~~L~~~KLk~l~~dL   33 (81)
T 1lre_A            2 EEFRMEKLNQLWEKAQRLHLPPVRLAELHADL   33 (81)
T ss_dssp             CSSSSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            47888999999999999899999999998775

>1ov2_A Alpha-2-macroglobulin receptor-associated protein precursor; helical protein; NMR {Homo sapiens} SCOP: a.13.1.1

Probab=91.35  E-value=0.14  Score=38.05  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=30.0

Q ss_pred             CCCCCCChhHHHHHHHHHhCCCCHHHHHHHhhhC
Q psy9493         142 PRAVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL  175 (175)
Q Consensus       142 ~~~~F~DpKl~kLW~kA~~sgFS~eEL~sLk~EL  175 (175)
                      ...+|.=-|||-||.+|+++-+|+--|.+|..||
T Consensus        16 ~~~pFRmaKLN~lW~KAq~~~Ls~~KLk~l~~dL   49 (99)
T 1ov2_A           16 SGEEFRMEKLNQLWEKAQRLHLPPVRLAELHADL   49 (99)
T ss_dssp             -CCSSSCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            3568999999999999997799999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	175
d1ov2a_	82	a.13.1.1 (A:) alpha-2-Macroglobulin receptor assoc	4e-27

>d1ov2a_ a.13.1.1 (A:) alpha-2-Macroglobulin receptor associated protein (RAP) {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All alpha proteins
fold: RAP domain-like
superfamily: RAP domain-like
family: RAP domain
domain: alpha-2-Macroglobulin receptor associated protein (RAP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.6 bits (238), Expect = 4e-27
 Identities = 34/79 (43%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 48  FRMGKLNLLWKKAQ-VRLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRK 106
           FRM KLN LW+KAQ + L   +L  ++ +LKI +++E+ +KK+K DGLD DG++E  L +
Sbjct: 4   FRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLIR 63

Query: 107 RLVGIMSTYGLLEHFEDIQ 125
            L  I++ YGL    +  Q
Sbjct: 64  NLNVILAKYGLDGKKDARQ 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	175
d1ov2a_	82	alpha-2-Macroglobulin receptor associated protein	99.97
d2fcwa1	105	alpha-2-Macroglobulin receptor associated protein	97.96
d1ov2a_	82	alpha-2-Macroglobulin receptor associated protein	93.43

>d1ov2a_ a.13.1.1 (A:) alpha-2-Macroglobulin receptor associated protein (RAP) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RAP domain-like
superfamily: RAP domain-like
family: RAP domain
domain: alpha-2-Macroglobulin receptor associated protein (RAP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4e-32  Score=195.21  Aligned_cols=76  Identities=43%  Similarity=0.708  Sum_probs=73.8

Q ss_pred             CccchhhhHHHHHHHHc-cCCHHHHHHHHHHhhhhHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHhhcccccc
Q psy9493          46 NPFRMGKLNLLWKKAQV-RLSEPKLKSIYNELKIHDKEEILFKKVKADGLDPDGQREGILRKRLVGIMSTYGLLEHF  121 (175)
Q Consensus        46 ~~FR~~KLN~LWeKAq~-~fs~~eL~~L~~ELk~qeK~e~~~k~LK~eg~D~dG~kEa~Lr~kl~~Il~kYgL~~~~  121 (175)
                      .+|||+|||+||+||++ ++|+++|++||+||++|||+|++||+||++|+|+||++|++||++|++||++|||++..
T Consensus         2 ~eFRm~KLN~lW~KA~~~~ls~~kL~~L~~dLKihdkeEl~wK~lKaeg~D~dG~kEa~LR~kl~~Im~~YgL~g~k   78 (82)
T d1ov2a_           2 EEFRMEKLNQLWEKAQRLHLPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKK   78 (82)
T ss_dssp             CSSSCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             cchHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhCCCccc
Confidence            58999999999999999 99999999999999999999999999999999999999999999999999999999753

>d2fcwa1 a.13.1.1 (A:216-320) alpha-2-Macroglobulin receptor associated protein (RAP) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RAP domain-like
superfamily: RAP domain-like
family: RAP domain
domain: alpha-2-Macroglobulin receptor associated protein (RAP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=5.6e-06  Score=60.75  Aligned_cols=44  Identities=23%  Similarity=0.317  Sum_probs=38.8

Q ss_pred             CccchhhhHHHHHHHHc-cCCHHHHHHHHHHhhhhHHHHHHHHhh
Q psy9493          46 NPFRMGKLNLLWKKAQV-RLSEPKLKSIYNELKIHDKEEILFKKV   89 (175)
Q Consensus        46 ~~FR~~KLN~LWeKAq~-~fs~~eL~~L~~ELk~qeK~e~~~k~L   89 (175)
                      +.|.-+|+.-||..|+. .||+.+|.+|+.||+|.|..-.....+
T Consensus         1 ~EF~EPkVq~LW~~A~~~nFt~~EL~SlkeEL~HfE~rl~K~rH~   45 (105)
T d2fcwa1           1 AEFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHY   45 (105)
T ss_dssp             CSCCSHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999 999999999999999998876655444

>d1ov2a_ a.13.1.1 (A:) alpha-2-Macroglobulin receptor associated protein (RAP) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RAP domain-like
superfamily: RAP domain-like
family: RAP domain
domain: alpha-2-Macroglobulin receptor associated protein (RAP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.026  Score=39.04  Aligned_cols=32  Identities=31%  Similarity=0.464  Sum_probs=28.8

Q ss_pred             CCCCChhHHHHHHHHHhCCCCHHHHHHHhhhC
Q psy9493         144 AVFKDKKLNKLWEKAEHSGFTCKNVKFNNQEL  175 (175)
Q Consensus       144 ~~F~DpKl~kLW~kA~~sgFS~eEL~sLk~EL  175 (175)
                      .+|.=-|||-||.+|+..-+|+-.|.+|..||
T Consensus         2 ~eFRm~KLN~lW~KA~~~~ls~~kL~~L~~dL   33 (82)
T d1ov2a_           2 EEFRMEKLNQLWEKAQRLHLPPVRLAELHADL   33 (82)
T ss_dssp             CSSSCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhCChHHHHHHHHHH
Confidence            35888899999999999999999999998875