Psyllid ID: psy9518

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLESTQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAGFSFLPKHKANSWK
Secondary Structure (PSIPRED)
cccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHccccccccEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHccHHHHHHHHHHHHHHHHHHcccccccccccHcccccccccccHHHHHHccccHHHHHHHHHHHccccccccEEEccccccccc
Coil and Loop (DISEMBL)
migrgalikpwifqeikekklfdissAERFDILKEYVNYGLehwgsdtrgVETTRRFLLEWLSFLHRYipvgllestqkmnqrppmyhgrneletlmtssncsdWIKISEMLLgkipagfsflpkhkanswk
Flexible Loop (DISEMBL)
migrgalikpwifqeikekklfdissaERFDILKEYVNYGlehwgsdtrgvETTRRFLLEWLSFLHRYIPVGLLESTQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPagfsflpkhkanswk
Low Complexity Region (SEG)
MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLESTQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAGFSFLPKHKANSWK
Disordered region (IsUnstruct)
****GALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLE*******************TLMTSSNCSDWIKISEMLLGKIPAGFSFL*********
Disordered Region (DISOPRED)
MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLESTQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAGFSFLPKHK*****
Disordered Region (DISEMBL)
MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLESTQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAGFSFLPKHKANSWK
Disordered Region (DISPRO)
MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLESTQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAGFSFLPKHK*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLESTQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAGFSFLPKHKANSWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q91XI1	637	tRNA-dihydrouridine(47) s	yes	N/A	1.0	0.207	0.684	3e-54
Q96G46	650	tRNA-dihydrouridine(47) s	yes	N/A	1.0	0.203	0.691	4e-54
Q3KRC5	640	tRNA-dihydrouridine(47) s	yes	N/A	1.0	0.206	0.684	5e-54
Q28BT8	639	tRNA-dihydrouridine(47) s	yes	N/A	1.0	0.206	0.714	1e-53
Q7ZWS1	640	tRNA-dihydrouridine(47) s	N/A	N/A	1.0	0.206	0.714	4e-53
Q7XT07	685	tRNA-dihydrouridine(47) s	yes	N/A	0.992	0.191	0.666	5e-52
Q9T0J6	691	tRNA-dihydrouridine(47) s	yes	N/A	0.992	0.189	0.651	3e-49
Q54CU9	671	tRNA-dihydrouridine(47) s	yes	N/A	1.0	0.196	0.613	6e-48
P0CN28	725	tRNA-dihydrouridine(47) s	yes	N/A	0.992	0.180	0.636	1e-47
P0CN29	725	tRNA-dihydrouridine(47) s	N/A	N/A	0.992	0.180	0.636	1e-47

>sp|Q91XI1|DUS3L_MOUSE tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Mus musculus GN=Dus3l PE=2 SV=1

 Score =  209 bits (533), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 91/133 (68%), Positives = 113/133 (84%), Gaps = 1/133 (0%)

Query: 1   MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
           M+ RGAL+KPW+F EIKE++ +DISS+ER DIL+++ +YGLEHWGSDT+GVE TRRFLLE
Sbjct: 505 MVARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLE 564

Query: 61  WLSFLHRYIPVGLLES-TQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
           WLSFL RY+PVGLLE   Q++N+RPP Y GR+ LETLM S   +DWI+ISEMLLG +P G
Sbjct: 565 WLSFLCRYVPVGLLERPPQRINERPPYYLGRDYLETLMASQQAADWIRISEMLLGPVPPG 624

Query: 120 FSFLPKHKANSWK 132
           F FLPKHKAN++K
Sbjct: 625 FVFLPKHKANAYK 637

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: -

>sp|Q96G46|DUS3L_HUMAN tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS3L PE=1 SV=2

 Score =  209 bits (532), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 92/133 (69%), Positives = 113/133 (84%), Gaps = 1/133 (0%)

Query: 1   MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
           MI RGAL+KPW+F EIKE++ +DISS+ER DIL+++ NYGLEHWGSDT+GVE TRRFLLE
Sbjct: 518 MIARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLE 577

Query: 61  WLSFLHRYIPVGLLES-TQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
           WLSFL RY+PVGLLE   Q++N+RPP Y GR+ LETLM S   +DWI+ISEMLLG +P  
Sbjct: 578 WLSFLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQKAADWIRISEMLLGPVPPS 637

Query: 120 FSFLPKHKANSWK 132
           F+FLPKHKAN++K
Sbjct: 638 FAFLPKHKANAYK 650

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q3KRC5|DUS3L_RAT tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Rattus norvegicus GN=Dus3l PE=2 SV=1

 Score =  209 bits (531), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 91/133 (68%), Positives = 113/133 (84%), Gaps = 1/133 (0%)

Query: 1   MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
           M+ RGAL+KPW+F EIKE++ +DISS+ER DIL+++ +YGLEHWGSDT+GVE TRRFLLE
Sbjct: 508 MVARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLE 567

Query: 61  WLSFLHRYIPVGLLES-TQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
           WLSFL RY+PVGLLE   Q++N+RPP Y GR+ LETLM S   +DWI+ISEMLLG +P G
Sbjct: 568 WLSFLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQQAADWIRISEMLLGPVPPG 627

Query: 120 FSFLPKHKANSWK 132
           F FLPKHKAN++K
Sbjct: 628 FVFLPKHKANAYK 640

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q28BT8|DUS3L_XENTR tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus tropicalis GN=dus3l PE=2 SV=2

 Score =  207 bits (528), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 95/133 (71%), Positives = 113/133 (84%), Gaps = 1/133 (0%)

Query: 1   MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
           M+ RGAL+KPW+F EIKE++ +DISS ERFDILK++ NYGLEHWGSD +GVE TRRF+LE
Sbjct: 507 MLARGALLKPWLFTEIKEQRHWDISSTERFDILKDFTNYGLEHWGSDCQGVEKTRRFMLE 566

Query: 61  WLSFLHRYIPVGLLEST-QKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
           WLSFL RYIP+GLLE   QK+N+RPP Y GR+ +ETLM S N +DWIKISEMLLG +P  
Sbjct: 567 WLSFLCRYIPIGLLEHVPQKINERPPYYMGRDYMETLMASQNVTDWIKISEMLLGPVPPN 626

Query: 120 FSFLPKHKANSWK 132
           FSFLPKHKANS+K
Sbjct: 627 FSFLPKHKANSYK 639

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q7ZWS1|DUS3L_XENLA tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus laevis GN=dus3l PE=2 SV=1

 Score =  206 bits (523), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 95/133 (71%), Positives = 112/133 (84%), Gaps = 1/133 (0%)

Query: 1   MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
           M+ RGAL KPW+F EIKE++ +DISS ERFDILK++ NYGLEHWGSD +GVE TR+F+LE
Sbjct: 508 MLARGALFKPWLFTEIKEQRHWDISSTERFDILKDFTNYGLEHWGSDCQGVEKTRKFMLE 567

Query: 61  WLSFLHRYIPVGLLEST-QKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
           WLSFL RYIPVGLLE   QK+N+RPP Y GR+ LETLM S N +DWIKISEMLLG +P  
Sbjct: 568 WLSFLCRYIPVGLLEHVPQKINERPPYYMGRDYLETLMASQNVTDWIKISEMLLGPVPPN 627

Query: 120 FSFLPKHKANSWK 132
           F+FLPKHKANS+K
Sbjct: 628 FTFLPKHKANSYK 640

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q7XT07|DUS3L_ORYSJ tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Oryza sativa subsp. japonica GN=Os04g0117600 PE=2 SV=2

 Score =  202 bits (514), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 88/132 (66%), Positives = 114/132 (86%), Gaps = 1/132 (0%)

Query: 1   MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
           MI RGALIKPWIF E+KE++ +DI+S ERF+ILK++V++GLEHWGSD++GVETTR FLLE
Sbjct: 548 MIARGALIKPWIFTEVKEQRHWDITSGERFNILKDFVSFGLEHWGSDSKGVETTRYFLLE 607

Query: 61  WLSFLHRYIPVGLLEST-QKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
           WLS+  RYIPVGLL+   Q++N RPP Y GR++LETLM S + +DWI+ISEMLLGK+P G
Sbjct: 608 WLSYTCRYIPVGLLDVIPQRLNWRPPSYCGRDDLETLMISDSAADWIRISEMLLGKVPEG 667

Query: 120 FSFLPKHKANSW 131
           F+F PKHK+N++
Sbjct: 668 FTFTPKHKSNAY 679

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q9T0J6|DUS3L_ARATH tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Arabidopsis thaliana GN=At4g38890 PE=2 SV=2

 Score =  193 bits (490), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 86/132 (65%), Positives = 111/132 (84%), Gaps = 1/132 (0%)

Query: 1   MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
           MI RGALIKPWIF EIKE++ +DI+S ER +I+K++V +GL+HWGSDT+GVETTR FLLE
Sbjct: 554 MIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFVRFGLQHWGSDTKGVETTRHFLLE 613

Query: 61  WLSFLHRYIPVGLLEST-QKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
           WLS+  RYIPVGLL+   Q++N RPP Y GR++LETLM S +  DW++ISEMLLGK+P G
Sbjct: 614 WLSYTFRYIPVGLLDVIPQQINWRPPSYFGRDDLETLMMSESAGDWVRISEMLLGKVPEG 673

Query: 120 FSFLPKHKANSW 131
           F+F PKHK+N++
Sbjct: 674 FTFAPKHKSNAY 685

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q54CU9|DUS3L_DICDI tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Dictyostelium discoideum GN=dus3l PE=3 SV=1

 Score =  189 bits (479), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 81/132 (61%), Positives = 106/132 (80%)

Query: 1   MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
           MI RGALIKPWIF EIKEK+ +DIS++ER D ++++ NYGL+HWGSD  GV+ TR+FLL 
Sbjct: 537 MIARGALIKPWIFTEIKEKREWDISASERLDFIRDFANYGLDHWGSDRIGVDNTRKFLLN 596

Query: 61  WLSFLHRYIPVGLLESTQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAGF 120
           WLSF HRYIPVGLL+    MN+RPP Y GR++LETL+ S+   DWIKI+EM LG + + +
Sbjct: 597 WLSFSHRYIPVGLLDKVHYMNERPPAYFGRSDLETLLASTQVKDWIKITEMFLGPVTSDY 656

Query: 121 SFLPKHKANSWK 132
           SF+PKH +NS++
Sbjct: 657 SFVPKHNSNSYE 668

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P0CN28|DUS3_CRYNJ tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=DUS3 PE=3 SV=1

 Score =  187 bits (475), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 84/132 (63%), Positives = 105/132 (79%), Gaps = 1/132 (0%)

Query: 1   MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
           M+ RGALIKPWIF EIKE++ +DIS+ ER + +K++  +GL HWGSDT+GV TTRRFL E
Sbjct: 587 MVARGALIKPWIFTEIKERREWDISAVERLEGIKKFAEFGLSHWGSDTQGVNTTRRFLCE 646

Query: 61  WLSFLHRYIPVGLLES-TQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
            LSF HRYIP+GLLE    K+N+RPP Y GRNELETL+ S    DW+KISEM LGK+  G
Sbjct: 647 ALSFQHRYIPIGLLERLPAKLNERPPAYRGRNELETLLASPFAGDWVKISEMFLGKVDEG 706

Query: 120 FSFLPKHKANSW 131
           FSF+PKHK+N++
Sbjct: 707 FSFVPKHKSNAY 718

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

EC: 9

>sp|P0CN29|DUS3_CRYNB tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=DUS3 PE=3 SV=1

 Score =  187 bits (475), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 84/132 (63%), Positives = 105/132 (79%), Gaps = 1/132 (0%)

Query: 1   MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
           M+ RGALIKPWIF EIKE++ +DIS+ ER + +K++  +GL HWGSDT+GV TTRRFL E
Sbjct: 587 MVARGALIKPWIFTEIKERREWDISAVERLEGIKKFAEFGLSHWGSDTQGVNTTRRFLCE 646

Query: 61  WLSFLHRYIPVGLLES-TQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
            LSF HRYIP+GLLE    K+N+RPP Y GRNELETL+ S    DW+KISEM LGK+  G
Sbjct: 647 ALSFQHRYIPIGLLERLPAKLNERPPAYRGRNELETLLASPFAGDWVKISEMFLGKVDEG 706

Query: 120 FSFLPKHKANSW 131
           FSF+PKHK+N++
Sbjct: 707 FSFVPKHKSNAY 718

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
307203528	660	tRNA-dihydrouridine synthase 3-like [Har	0.992	0.198	0.780	2e-59
383851178	640	PREDICTED: tRNA-dihydrouridine(47) synth	0.992	0.204	0.787	5e-59
350411344	651	PREDICTED: tRNA-dihydrouridine synthase	0.992	0.201	0.787	1e-58
340729664	651	PREDICTED: LOW QUALITY PROTEIN: tRNA-dih	0.992	0.201	0.787	1e-58
328778500	642	PREDICTED: tRNA-dihydrouridine synthase	0.992	0.204	0.795	2e-58
380017191	642	PREDICTED: tRNA-dihydrouridine(47) synth	0.992	0.204	0.795	2e-58
332028941	665	tRNA-dihydrouridine synthase 3-like prot	0.992	0.196	0.75	1e-57
270007852	548	hypothetical protein TcasGA2_TC014592 [T	1.0	0.240	0.766	5e-56
357605297	588	putative dihydrouridine synthase 3-like	0.992	0.222	0.757	9e-56
291242586	599	PREDICTED: CG3645-like [Saccoglossus kow	1.0	0.220	0.736	5e-55

>gi|307203528|gb|EFN82561.1| tRNA-dihydrouridine synthase 3-like [Harpegnathos saltator]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 103/132 (78%), Positives = 119/132 (90%), Gaps = 1/132 (0%)

Query: 2   IGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEW 61
           IGRGALIKPWIF EIKE+KL DI S ERFDIL++Y NYGLEHWGSDTRGVETTRRF+LEW
Sbjct: 529 IGRGALIKPWIFTEIKERKLIDIPSGERFDILRKYANYGLEHWGSDTRGVETTRRFMLEW 588

Query: 62  LSFLHRYIPVGLLE-STQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAGF 120
           +SFLHRY+PVG+LE   Q++N+RPP Y GRN++ETLM SSNC+DW+K+SEMLLGK+P GF
Sbjct: 589 ISFLHRYVPVGILERPPQRINERPPFYRGRNDMETLMASSNCADWVKLSEMLLGKVPDGF 648

Query: 121 SFLPKHKANSWK 132
            FLPKHKANSWK
Sbjct: 649 HFLPKHKANSWK 660

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851178|ref|XP_003701116.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Megachile rotundata]

 Score =  231 bits (590), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 104/132 (78%), Positives = 120/132 (90%), Gaps = 1/132 (0%)

Query: 2   IGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEW 61
           IGRGALIKPWIF EIKE+KL DISS ERF+ILK+Y NYGLEHWGSDTRGVETTRRF+LEW
Sbjct: 509 IGRGALIKPWIFTEIKERKLIDISSNERFEILKKYANYGLEHWGSDTRGVETTRRFMLEW 568

Query: 62  LSFLHRYIPVGLLE-STQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAGF 120
           +SFLHRY+PVG+LE   Q++N+RPP Y GR+E+ETLM SSNC+DWIK+SE+LLGK+P GF
Sbjct: 569 ISFLHRYVPVGILERPPQRINERPPFYRGRDEMETLMASSNCADWIKLSELLLGKVPEGF 628

Query: 121 SFLPKHKANSWK 132
            FLPKHKANSWK
Sbjct: 629 HFLPKHKANSWK 640

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|350411344|ref|XP_003489316.1| PREDICTED: tRNA-dihydrouridine synthase 3-like [Bombus impatiens]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/132 (78%), Positives = 120/132 (90%), Gaps = 1/132 (0%)

Query: 2   IGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEW 61
           IGRGALIKPWIF EIKEKKL DISS+ERF+IL++Y  YGLEHWGSDTRGVETTRRF+LEW
Sbjct: 520 IGRGALIKPWIFTEIKEKKLIDISSSERFEILRKYSKYGLEHWGSDTRGVETTRRFMLEW 579

Query: 62  LSFLHRYIPVGLLES-TQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAGF 120
           +SFLHRYIPVG+LE   Q++N+RPP Y GR+++ETLM SSNC+DWIK+SEMLLGK+P GF
Sbjct: 580 ISFLHRYIPVGILEKPPQRINERPPFYRGRDDMETLMASSNCADWIKLSEMLLGKVPEGF 639

Query: 121 SFLPKHKANSWK 132
            FLPKHKANSWK
Sbjct: 640 HFLPKHKANSWK 651

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729664|ref|XP_003403117.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine synthase 3-like [Bombus terrestris]

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/132 (78%), Positives = 120/132 (90%), Gaps = 1/132 (0%)

Query: 2   IGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEW 61
           IGRGALIKPWIF EIKEKKL DISS+ERF+IL++Y  YGLEHWGSDTRGVETTRRF+LEW
Sbjct: 520 IGRGALIKPWIFTEIKEKKLIDISSSERFEILRKYSKYGLEHWGSDTRGVETTRRFMLEW 579

Query: 62  LSFLHRYIPVGLLES-TQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAGF 120
           +SFLHRYIPVG+LE   Q++N+RPP Y GR+++ETLM SSNC+DWIK+SEMLLGK+P GF
Sbjct: 580 ISFLHRYIPVGILEKPPQRINERPPFYRGRDDMETLMASSNCADWIKLSEMLLGKVPEGF 639

Query: 121 SFLPKHKANSWK 132
            FLPKHKANSWK
Sbjct: 640 HFLPKHKANSWK 651

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778500|ref|XP_393458.4| PREDICTED: tRNA-dihydrouridine synthase 3-like [Apis mellifera]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/132 (79%), Positives = 119/132 (90%), Gaps = 1/132 (0%)

Query: 2   IGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEW 61
           IGRGALIKPWIF EIKEKKL DISS ERF+ILK+Y  YGLEHWGSDTRGVETTRRF+LEW
Sbjct: 511 IGRGALIKPWIFTEIKEKKLIDISSTERFEILKKYSKYGLEHWGSDTRGVETTRRFMLEW 570

Query: 62  LSFLHRYIPVGLLE-STQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAGF 120
           +SFLHRYIPVG+LE   Q++N+RPP Y GR+++ETLM SSNC+DWIK+SEMLLGK+P GF
Sbjct: 571 ISFLHRYIPVGILERPPQRINERPPFYKGRDDMETLMASSNCADWIKLSEMLLGKVPKGF 630

Query: 121 SFLPKHKANSWK 132
            FLPKHKANSWK
Sbjct: 631 HFLPKHKANSWK 642

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017191|ref|XP_003692544.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Apis florea]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/132 (79%), Positives = 119/132 (90%), Gaps = 1/132 (0%)

Query: 2   IGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEW 61
           IGRGALIKPWIF EIKEKKL DISS ERF+ILK+Y  YGLEHWGSDTRGVETTRRF+LEW
Sbjct: 511 IGRGALIKPWIFTEIKEKKLIDISSTERFEILKKYSKYGLEHWGSDTRGVETTRRFMLEW 570

Query: 62  LSFLHRYIPVGLLE-STQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAGF 120
           +SFLHRYIPVG+LE   Q++N+RPP Y GR+++ETLM SSNC+DWIK+SEMLLGK+P GF
Sbjct: 571 ISFLHRYIPVGILERPPQRINERPPFYKGRDDMETLMASSNCADWIKLSEMLLGKVPKGF 630

Query: 121 SFLPKHKANSWK 132
            FLPKHKANSWK
Sbjct: 631 HFLPKHKANSWK 642

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|332028941|gb|EGI68959.1| tRNA-dihydrouridine synthase 3-like protein [Acromyrmex echinatior]

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/140 (75%), Positives = 120/140 (85%), Gaps = 9/140 (6%)

Query: 2   IGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEW 61
           IGRGALIKPWIF EIKE+KL DISSAERFDILK+Y NYGLEHWGSDTRGVE TRRF+LEW
Sbjct: 526 IGRGALIKPWIFTEIKERKLIDISSAERFDILKKYANYGLEHWGSDTRGVENTRRFMLEW 585

Query: 62  LSFLHR--------YIPVGLLES-TQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEML 112
           +SFLHR        YIPVG+LE   Q++N+RPP Y GR+++ETLM SSNC+DW+K+SEML
Sbjct: 586 ISFLHRQVYLEKNVYIPVGILERPPQRINERPPFYRGRDDMETLMASSNCADWVKLSEML 645

Query: 113 LGKIPAGFSFLPKHKANSWK 132
           LGK+P GF FLPKHKANSWK
Sbjct: 646 LGKVPDGFRFLPKHKANSWK 665

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007852|gb|EFA04300.1| hypothetical protein TcasGA2_TC014592 [Tribolium castaneum]

 Score =  222 bits (565), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 102/133 (76%), Positives = 118/133 (88%), Gaps = 1/133 (0%)

Query: 1   MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
           MIGRGALIKPWIF EIKE+KL+DISS+ERFD+LK+Y NYGLEHWGSD +GVE TRRFLLE
Sbjct: 416 MIGRGALIKPWIFTEIKEQKLWDISSSERFDLLKKYTNYGLEHWGSDNKGVENTRRFLLE 475

Query: 61  WLSFLHRYIPVGLLES-TQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
           WLSFLHRY+PVGLLE   QK+N+RPP Y GR++LETLM S++ SDW+KISEMLLG +P  
Sbjct: 476 WLSFLHRYVPVGLLEKPPQKINERPPFYQGRDDLETLMASTSASDWVKISEMLLGPVPEN 535

Query: 120 FSFLPKHKANSWK 132
           F FLPKHKANS+K
Sbjct: 536 FQFLPKHKANSYK 548

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357605297|gb|EHJ64545.1| putative dihydrouridine synthase 3-like protein [Danaus plexippus]

 Score =  221 bits (562), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 100/132 (75%), Positives = 118/132 (89%), Gaps = 1/132 (0%)

Query: 1   MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
           MIGRGALIKPWIF EIKE+KL+DISS ERF+I+K++  +GLEHWGSDT+GVE TRRFLLE
Sbjct: 457 MIGRGALIKPWIFNEIKEQKLYDISSHERFEIIKKFTKFGLEHWGSDTQGVENTRRFLLE 516

Query: 61  WLSFLHRYIPVGLLE-STQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
           WLSFL+RYIPVGLLE   QK+N+RPP+Y GRN+LETLM S NC+DW+KISEM+LG +P G
Sbjct: 517 WLSFLYRYIPVGLLERPPQKINERPPLYFGRNDLETLMASGNCADWVKISEMVLGPVPDG 576

Query: 120 FSFLPKHKANSW 131
           F FLPKHKANS+
Sbjct: 577 FKFLPKHKANSY 588

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291242586|ref|XP_002741186.1| PREDICTED: CG3645-like [Saccoglossus kowalevskii]

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 98/133 (73%), Positives = 118/133 (88%), Gaps = 1/133 (0%)

Query: 1   MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
           MI RGALIKPW+F EIKE++ +DISS+ERFDIL+++ NYGLEHWGSD +GV+ TRRFLLE
Sbjct: 467 MIARGALIKPWVFTEIKEQRHWDISSSERFDILRDFTNYGLEHWGSDQQGVDRTRRFLLE 526

Query: 61  WLSFLHRYIPVGLLEST-QKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
           WLSFL+RYIPVG+LES  QK+NQRPP Y GR++LETLM S NC DW+KISEMLLG +P+G
Sbjct: 527 WLSFLYRYIPVGILESIPQKINQRPPCYFGRDDLETLMASPNCGDWVKISEMLLGPVPSG 586

Query: 120 FSFLPKHKANSWK 132
           F FLPKH+ANS+K
Sbjct: 587 FEFLPKHRANSYK 599

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
UNIPROTKB|F1NGP4	630	DUS3L "Uncharacterized protein	1.0	0.209	0.721	5.8e-50
UNIPROTKB|Q96G46	650	DUS3L "tRNA-dihydrouridine(47)	1.0	0.203	0.691	1.8e-48
MGI|MGI:2147092	637	Dus3l "dihydrouridine synthase	1.0	0.207	0.684	3.7e-48
RGD|1563228	640	Dus3l "dihydrouridine synthase	1.0	0.206	0.684	3.7e-48
UNIPROTKB|E1BGZ1	650	DUS3L "Uncharacterized protein	1.0	0.203	0.684	1.2e-47
UNIPROTKB|F1SBU5	652	LOC100513458 "Uncharacterized	1.0	0.202	0.684	1.6e-47
ZFIN|ZDB-GENE-040426-1260	660	dus3l "dihydrouridine synthase	1.0	0.2	0.684	2e-47
FB|FBgn0032819	604	CG10463 [Drosophila melanogast	0.992	0.216	0.659	1.1e-46
UNIPROTKB|F1PS34	645	LOC100856098 "Uncharacterized	1.0	0.204	0.676	1.4e-46
WB|WBGene00021377	554	Y37E11B.5 [Caenorhabditis eleg	0.992	0.236	0.666	9.1e-45

UNIPROTKB|F1NGP4 DUS3L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 96/133 (72%), Positives = 114/133 (85%)

Query:     1 MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
             MI RGALIKPW+F EIKE++ +DISS+ERFDIL+++ NYGLEHWGSDT+GVE TR+FLLE
Sbjct:   498 MIARGALIKPWLFTEIKEQRHWDISSSERFDILRDFTNYGLEHWGSDTQGVEKTRKFLLE 557

Query:    61 WLSFLHRYIPVGLLEST-QKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
             WLSFL RYIPVGLLE   QK+N+RPP Y GR+ LETLM S N  DWIKISE+LLG +P  
Sbjct:   558 WLSFLCRYIPVGLLEHLPQKINERPPYYIGRDYLETLMASQNVDDWIKISELLLGPVPTN 617

Query:   120 FSFLPKHKANSWK 132
             F+FLPKHKANS++
Sbjct:   618 FTFLPKHKANSYR 630

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

UNIPROTKB|Q96G46 DUS3L "tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like" [Homo sapiens (taxid:9606)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 92/133 (69%), Positives = 113/133 (84%)

Query:     1 MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
             MI RGAL+KPW+F EIKE++ +DISS+ER DIL+++ NYGLEHWGSDT+GVE TRRFLLE
Sbjct:   518 MIARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLE 577

Query:    61 WLSFLHRYIPVGLLEST-QKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
             WLSFL RY+PVGLLE   Q++N+RPP Y GR+ LETLM S   +DWI+ISEMLLG +P  
Sbjct:   578 WLSFLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQKAADWIRISEMLLGPVPPS 637

Query:   120 FSFLPKHKANSWK 132
             F+FLPKHKAN++K
Sbjct:   638 FAFLPKHKANAYK 650

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

MGI|MGI:2147092 Dus3l "dihydrouridine synthase 3-like (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 91/133 (68%), Positives = 113/133 (84%)

Query:     1 MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
             M+ RGAL+KPW+F EIKE++ +DISS+ER DIL+++ +YGLEHWGSDT+GVE TRRFLLE
Sbjct:   505 MVARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLE 564

Query:    61 WLSFLHRYIPVGLLEST-QKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
             WLSFL RY+PVGLLE   Q++N+RPP Y GR+ LETLM S   +DWI+ISEMLLG +P G
Sbjct:   565 WLSFLCRYVPVGLLERPPQRINERPPYYLGRDYLETLMASQQAADWIRISEMLLGPVPPG 624

Query:   120 FSFLPKHKANSWK 132
             F FLPKHKAN++K
Sbjct:   625 FVFLPKHKANAYK 637

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008033 "tRNA processing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

RGD|1563228 Dus3l "dihydrouridine synthase 3-like (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 91/133 (68%), Positives = 113/133 (84%)

Query:     1 MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
             M+ RGAL+KPW+F EIKE++ +DISS+ER DIL+++ +YGLEHWGSDT+GVE TRRFLLE
Sbjct:   508 MVARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLE 567

Query:    61 WLSFLHRYIPVGLLEST-QKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
             WLSFL RY+PVGLLE   Q++N+RPP Y GR+ LETLM S   +DWI+ISEMLLG +P G
Sbjct:   568 WLSFLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQQAADWIRISEMLLGPVPPG 627

Query:   120 FSFLPKHKANSWK 132
             F FLPKHKAN++K
Sbjct:   628 FVFLPKHKANAYK 640

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

UNIPROTKB|E1BGZ1 DUS3L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 91/133 (68%), Positives = 112/133 (84%)

Query:     1 MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
             MI RGAL+KPW+F EIKE++ +DISS+ER DIL+++ +YGLEHWGSDT+GVE TRRFLLE
Sbjct:   518 MIARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVEKTRRFLLE 577

Query:    61 WLSFLHRYIPVGLLEST-QKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
             WLSFL RY+PVGLLE   Q++N+RPP Y GR+ LETLM S   +DWI+ISEMLLG +P  
Sbjct:   578 WLSFLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQKAADWIRISEMLLGPVPPN 637

Query:   120 FSFLPKHKANSWK 132
             F FLPKHKAN++K
Sbjct:   638 FVFLPKHKANAYK 650

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1SBU5 LOC100513458 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 91/133 (68%), Positives = 112/133 (84%)

Query:     1 MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
             MI RGAL+KPW+F EIKE++ +DISS+ER DIL+++ +YGLEHWGSDT+GVE TRRFLLE
Sbjct:   520 MIARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVEKTRRFLLE 579

Query:    61 WLSFLHRYIPVGLLEST-QKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
             WLSFL RY+PVGLLE   Q++N+RPP Y GR+ LETLM S   +DWI+ISEMLLG +P  
Sbjct:   580 WLSFLCRYVPVGLLERLPQRINERPPYYMGRDYLETLMASQKAADWIRISEMLLGPVPPT 639

Query:   120 FSFLPKHKANSWK 132
             F FLPKHKAN++K
Sbjct:   640 FVFLPKHKANAYK 652

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1260 dus3l "dihydrouridine synthase 3-like (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 91/133 (68%), Positives = 110/133 (82%)

Query:     1 MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
             M+ RGALIKPW+F EIKE + +DISS ER DIL+++ ++GLEHWGSDT+GVE TR FLLE
Sbjct:   528 MVARGALIKPWLFTEIKESRHWDISSTERLDILRDFTHFGLEHWGSDTQGVEKTRNFLLE 587

Query:    61 WLSFLHRYIPVGLLEST-QKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
             WLSFL RYIPVGLLE   Q++N+RPP Y GR+ LETLM S +  DWI+ISEMLLG +P  
Sbjct:   588 WLSFLCRYIPVGLLERVPQRINERPPFYMGRDYLETLMASQHVDDWIQISEMLLGPVPKN 647

Query:   120 FSFLPKHKANSWK 132
             FSFLPKHKAN++K
Sbjct:   648 FSFLPKHKANAYK 660

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0032819 CG10463 [Drosophila melanogaster (taxid:7227)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 87/132 (65%), Positives = 112/132 (84%)

Query:     1 MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
             MIGRGALIKPWIFQEIKEK+ +  SS +R+++L+++ NYGLEHWGSDT+GVETTRRFLLE
Sbjct:   473 MIGRGALIKPWIFQEIKEKQAWSPSSGQRYEMLQKFCNYGLEHWGSDTKGVETTRRFLLE 532

Query:    61 WLSFLHRYIPVGLLEST-QKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
             W SFL+RYIP  L  +  QK+N RP  Y GR+E+ETLM+S N +DW+K+SE LLG++P G
Sbjct:   533 WQSFLYRYIPEALQTAPPQKINARPQKYRGRDEMETLMSSGNAADWVKLSESLLGRVPEG 592

Query:   120 FSFLPKHKANSW 131
             F+F+PKHKAN++
Sbjct:   593 FTFVPKHKANAF 604

GO:0008033 "tRNA processing" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1PS34 LOC100856098 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 90/133 (67%), Positives = 110/133 (82%)

Query:     1 MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
             MI RGAL+KPW+F EIKE++ +DISS+ER  IL+++  YGLEHWGSDT+GVE TRRFLLE
Sbjct:   513 MIARGALLKPWLFTEIKEQRHWDISSSERLAILQDFTRYGLEHWGSDTQGVEKTRRFLLE 572

Query:    61 WLSFLHRYIPVGLLEST-QKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
             WLSFL RY+PVGLLE   Q++N+RPP Y GR+ LETLM S   +DWI+ISEMLLG +P  
Sbjct:   573 WLSFLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQKAADWIRISEMLLGPVPPN 632

Query:   120 FSFLPKHKANSWK 132
             F FLPKHKAN++K
Sbjct:   633 FVFLPKHKANAYK 645

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

WB|WBGene00021377 Y37E11B.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 88/132 (66%), Positives = 107/132 (81%)

Query:     1 MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLE 60
             MIGRGALIKPWIF EI E++ +DISS ERFD+LK++V+YGL+HWGSD  GVE TRRFLLE
Sbjct:   423 MIGRGALIKPWIFTEIDERRTWDISSTERFDLLKKFVDYGLDHWGSDDAGVERTRRFLLE 482

Query:    61 WLSFLHRYIPVGLLEST-QKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAG 119
             +LSF  RYIPVG+LE   Q++N RPP + GRNELETL++S    DWI+IS  LLG  P G
Sbjct:   483 FLSFQCRYIPVGILERLPQRINDRPPRFCGRNELETLLSSQKADDWIEISTRLLGPTPEG 542

Query:   120 FSFLPKHKANSW 131
             F F+PKHKA+S+
Sbjct:   543 FQFIPKHKASSY 554

GO:0008033 "tRNA processing" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6C4K3	DUS3_YARLI	1, ., 3, ., 1, ., 8, 9	0.5151	0.9924	0.2106	yes	N/A
Q5BF62	DUS3_EMENI	1, ., 3, ., 1, ., 8, 9	0.5606	0.9924	0.1834	yes	N/A
Q2UL89	DUS3_ASPOR	1, ., 3, ., 1, ., 8, 9	0.5864	1.0	0.1808	yes	N/A
Q91XI1	DUS3L_MOUSE	1, ., 3, ., 1, ., -	0.6842	1.0	0.2072	yes	N/A
Q28BT8	DUS3L_XENTR	1, ., 3, ., 1, ., -	0.7142	1.0	0.2065	yes	N/A
Q96G46	DUS3L_HUMAN	1, ., 3, ., 1, ., -	0.6917	1.0	0.2030	yes	N/A
Q54CU9	DUS3L_DICDI	1, ., 3, ., 1, ., -	0.6136	1.0	0.1967	yes	N/A
Q9T0J6	DUS3L_ARATH	1, ., 3, ., 1, ., -	0.6515	0.9924	0.1895	yes	N/A
Q3KRC5	DUS3L_RAT	1, ., 3, ., 1, ., -	0.6842	1.0	0.2062	yes	N/A
P0CN28	DUS3_CRYNJ	1, ., 3, ., 1, ., 8, 9	0.6363	0.9924	0.1806	yes	N/A
Q6BS64	DUS3_DEBHA	1, ., 3, ., 1, ., 8, 9	0.5413	1.0	0.2122	yes	N/A
Q4WRX4	DUS3_ASPFU	1, ., 3, ., 1, ., 8, 9	0.5488	1.0	0.1818	yes	N/A
Q7XT07	DUS3L_ORYSJ	1, ., 3, ., 1, ., -	0.6666	0.9924	0.1912	yes	N/A
A3LUK5	DUS3_PICST	1, ., 3, ., 1, ., 8, 9	0.5563	1.0	0.2153	yes	N/A
A2QAU6	DUS3_ASPNC	1, ., 3, ., 1, ., 8, 9	0.5681	0.9924	0.1751	yes	N/A
Q6FJ14	DUS3_CANGA	1, ., 3, ., 1, ., 8, 9	0.5112	1.0	0.2062	yes	N/A
Q9UTH9	DUS3_SCHPO	1, ., 3, ., 1, ., 8, 9	0.5419	0.9848	0.2106	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	132
COG0042	323	COG0042, COG0042, tRNA-dihydrouridine synthase [Tr	3e-07
cd02801	231	cd02801, DUS_like_FMN, Dihydrouridine synthase-lik	4e-06
TIGR00737	319	TIGR00737, nifR3_yhdG, putative TIM-barrel protein	7e-05
pfam01207	309	pfam01207, Dus, Dihydrouridine synthase (Dus)	0.001

>gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 1   MIGRGALIKPWIFQEIKE---KKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRF 57
           MIGRGAL  PW+F++I      +L   + AE  DIL+E++   LE++G   +G+   R+ 
Sbjct: 226 MIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYG--KKGLRRLRKH 283

Query: 58  LLEWLSFLHR 67
           L  +      
Sbjct: 284 LG-YYLKGLP 292

Length = 323

>gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain

 Score = 44.0 bits (105), Expect = 4e-06
 Identities = 14/18 (77%), Positives = 16/18 (88%)

Query: 1   MIGRGALIKPWIFQEIKE 18
           MIGRGAL  PW+F+EIKE
Sbjct: 211 MIGRGALGNPWLFREIKE 228

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231

>gnl|CDD|129820 TIGR00737, nifR3_yhdG, putative TIM-barrel protein, nifR3 family

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 6/61 (9%)

Query: 1   MIGRGALIKPWIFQEIKE-----KKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTR 55
           MIGRGAL  PW+F++I++     K     + AE+ D +  ++    +++G +++G+   R
Sbjct: 220 MIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYG-ESKGLRIAR 278

Query: 56  R 56
           +
Sbjct: 279 K 279

This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Unknown function, General]. Length = 319

>gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus)

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 1   MIGRGALIKPWIFQEIK--EKKLFDISS--AERFDILKEYVNYGLEHWGSDTRG 50
           MIGRGAL  PW+F E    +   FD     AE  +I+ E+++Y  E +G D   
Sbjct: 211 MIGRGALGNPWLFAEQHTVKTGEFDPRPPLAEEAEIVLEHLSYLEEFYGEDKGL 264

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. Length = 309

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
KOG2333|consensus	614		99.93
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	99.83
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	99.77
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	99.67
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	99.64
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	99.59
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	99.59
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	99.42
KOG2335|consensus	358		97.04
TIGR03798	64	ocin_TIGR03798 bacteriocin propeptide, TIGR03798 f	81.28

>KOG2333|consensus

Probab=99.93  E-value=3.5e-26  Score=195.98  Aligned_cols=131  Identities=73%  Similarity=1.292  Sum_probs=122.2

Q ss_pred             CccccccccccchhHHhhcccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcH-HHHHH
Q psy9518           1 MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLL-ESTQK   79 (132)
Q Consensus         1 MIGRGAlGnPWIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~-~lR~~   79 (132)
                      ||||||+-.||||.+|......++|.-||++++.++.+.-.+|+|.+..||...|+|+.-|+.|++|++|-+-. .++++
T Consensus       483 MIaRGALIKPWIFtEIkeqq~wD~sSteRldiL~df~nyGLeHWGSDt~GVetTRRFlLE~lSF~~RYiPv~l~e~lpqr  562 (614)
T KOG2333|consen  483 MIARGALIKPWIFTEIKEQQHWDISSTERLDILKDFCNYGLEHWGSDTKGVETTRRFLLEFLSFFHRYIPVGLLEVLPQR  562 (614)
T ss_pred             EeeccccccchHhhhhhhhhcCCccchHHHHHHHHHHhhhhhhcCCccccHHHHHHHHHHHHHHHHhhchHHHhhcCchh
Confidence            99999999999999999877788999999999999999999999988899999999999999999999997731 36788


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCccccccccccCC
Q psy9518          80 MNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAGFSFLPKHKANSW  131 (132)
Q Consensus        80 i~~~~~~~e~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (132)
                      ||.-.-.--.++-|+.++.+...++||||||+|||+.|.||.|+||||||+.
T Consensus       563 iN~RPp~y~gRdelETLm~S~ka~DWvkiSe~lLGpvPegFtF~PKHKanay  614 (614)
T KOG2333|consen  563 INDRPPLYTGRDELETLMSSQKAADWVKISEMLLGPVPEGFTFTPKHKANAY  614 (614)
T ss_pred             hccCCccccchhHHHHHHhcccchhHHHHHHHHcCCCCCCceecccccccCC
Confidence            9988888888999999999999999999999999999999999999999974

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=99.83  E-value=1.6e-20  Score=154.56  Aligned_cols=92  Identities=25%  Similarity=0.317  Sum_probs=85.8

Q ss_pred             CccccccccccchhHHhhc-----ccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHH
Q psy9518           1 MIGRGALIKPWIFQEIKEK-----KLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLE   75 (132)
Q Consensus         1 MIGRGAlGnPWIF~qi~~~-----~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~   75 (132)
                      |||||+++|||||.++.++     ..++|+.+++++++++|++.+.++||+ +.++..+|||+.||+|    |+|+++ +
T Consensus       222 miGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~rk~~~~y~~----~~~~~~-~  295 (321)
T PRK10415        222 MIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGP-AKGYRIARKHVSWYLQ----EHAPND-Q  295 (321)
T ss_pred             EEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHHHh----cCCchH-H
Confidence            8999999999999999763     235688999999999999999999998 7899999999999999    999999 9


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHh
Q psy9518          76 STQKMNQRPPMYHGRNELETLMT   98 (132)
Q Consensus        76 lR~~i~~~~~~~e~~~~L~~~~~   98 (132)
                      +|+++++++|.+|+.+++++|+.
T Consensus       296 ~r~~~~~~~~~~~~~~~~~~~~~  318 (321)
T PRK10415        296 FRRTFNAIEDASEQLEALEAYFE  318 (321)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999885

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=99.77  E-value=1.2e-18  Score=143.24  Aligned_cols=89  Identities=18%  Similarity=0.141  Sum_probs=80.5

Q ss_pred             CccccccccccchhHHhhcccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHHHHHh
Q psy9518           1 MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLESTQKM   80 (132)
Q Consensus         1 MIGRGAlGnPWIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~lR~~i   80 (132)
                      |||||+++|||||+++..+. ++|+.+++++++.+|++...+.+++ ..++.+||||+.||++    |+|+++ ++|+++
T Consensus       222 miGRg~l~nP~lf~~~~~g~-~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~rk~~~~y~~----~~~~~~-~~r~~i  294 (312)
T PRK10550        222 MIGRGALNIPNLSRVVKYNE-PRMPWPEVVALLQKYTRLEKQGDTG-LYHVARIKQWLGYLRK----EYDEAT-ELFQEI  294 (312)
T ss_pred             EEcHHhHhCcHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHhcCcc-hhHHHHHHHHHHHHHh----cCCcHH-HHHHHH
Confidence            89999999999999998754 5689999999999999876766666 5789999999999999    999999 999999


Q ss_pred             hCCCCHHHHHHHHHHH
Q psy9518          81 NQRPPMYHGRNELETL   96 (132)
Q Consensus        81 ~~~~~~~e~~~~L~~~   96 (132)
                      ++++|.+|+.++++++
T Consensus       295 ~~~~~~~e~~~~~~~~  310 (312)
T PRK10550        295 RALNNSPDIARAIQAI  310 (312)
T ss_pred             HcCCCHHHHHHHHHhh
Confidence            9999999999998864

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=2e-16  Score=130.72  Aligned_cols=91  Identities=34%  Similarity=0.552  Sum_probs=83.1

Q ss_pred             CccccccccccchhHHhh----cccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHH
Q psy9518           1 MIGRGALIKPWIFQEIKE----KKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLES   76 (132)
Q Consensus         1 MIGRGAlGnPWIF~qi~~----~~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~l   76 (132)
                      |||||+++|||||.++ +    +...+|+..++++++.+|++.+.+++|  ..++..+|||+.||++    ++|+++ ++
T Consensus       226 MigRga~~nP~l~~~i-~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~r~h~~~~~~----~~~~a~-~~  297 (323)
T COG0042         226 MIGRGALGNPWLFRQI-DYLETGELLPPTLAEVLDILREHLELLLEYYG--KKGLRRLRKHLGYYLK----GLPGAR-EL  297 (323)
T ss_pred             EEcHHHccCCcHHHHH-HHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHhh----cCccHH-HH
Confidence            8999999999999997 3    233448999999999999999999999  4799999999999999    999999 99


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhc
Q psy9518          77 TQKMNQRPPMYHGRNELETLMTS   99 (132)
Q Consensus        77 R~~i~~~~~~~e~~~~L~~~~~~   99 (132)
                      |+.++++++..++.++++.++.+
T Consensus       298 r~~~~~~~~~~~~~~~l~~~~~~  320 (323)
T COG0042         298 RRALNKAEDGAEVRRALEAVFEE  320 (323)
T ss_pred             HHHHhccCcHHHHHHHHHHHHhh
Confidence            99999999999999999988764

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=99.64  E-value=8.9e-16  Score=125.63  Aligned_cols=92  Identities=24%  Similarity=0.437  Sum_probs=84.8

Q ss_pred             CccccccccccchhHHhhc-----ccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHH
Q psy9518           1 MIGRGALIKPWIFQEIKEK-----KLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLE   75 (132)
Q Consensus         1 MIGRGAlGnPWIF~qi~~~-----~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~   75 (132)
                      |||||+++|||||.++.+.     ..++|+.+++++++++|++.+.+++|+ ..++..+|||+.||++    ++|++. +
T Consensus       220 migR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~----~~~~~~-~  293 (319)
T TIGR00737       220 MIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGE-SKGLRIARKHIAWYLK----GFPGNA-A  293 (319)
T ss_pred             EEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHh----cCCcHH-H
Confidence            8999999999999999762     134688999999999999999999998 6899999999999999    999999 9


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHh
Q psy9518          76 STQKMNQRPPMYHGRNELETLMT   98 (132)
Q Consensus        76 lR~~i~~~~~~~e~~~~L~~~~~   98 (132)
                      +|+.|++++|.+|+++.+++|+.
T Consensus       294 ~r~~~~~~~~~~~~~~~~~~~~~  316 (319)
T TIGR00737       294 LRQTLNHASSFQEVKQLLDDFFE  316 (319)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHh
Confidence            99999999999999999999875

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=99.59  E-value=2.9e-16  Score=128.64  Aligned_cols=92  Identities=30%  Similarity=0.453  Sum_probs=74.1

Q ss_pred             CccccccccccchhH---Hhhcc-cCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHH
Q psy9518           1 MIGRGALIKPWIFQE---IKEKK-LFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLES   76 (132)
Q Consensus         1 MIGRGAlGnPWIF~q---i~~~~-~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~l   76 (132)
                      |||||+++|||||++   +..+. .+.++..++++++.+|++.+.+++|+ ..++..+|||+.||++    ++|+++ .+
T Consensus       211 MigRgal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~~~~y~~----~~~~~~-~~  284 (309)
T PF01207_consen  211 MIGRGALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGE-EKALRQMRKHLKWYFK----GFPGAR-KF  284 (309)
T ss_dssp             EESHHHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHC-CHHHHHHHTTCCCCTT----TSTTHH-HH
T ss_pred             EEchhhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHc----cCCcHH-HH
Confidence            899999999999995   33322 23445789999999999999999997 6899999999999999    999999 99


Q ss_pred             HHHhhCCCCHHHHHHHHH-HHHh
Q psy9518          77 TQKMNQRPPMYHGRNELE-TLMT   98 (132)
Q Consensus        77 R~~i~~~~~~~e~~~~L~-~~~~   98 (132)
                      |+.++++++.+|+.+.|+ .|++
T Consensus       285 r~~l~~~~~~~e~~~~l~~~~~~  307 (309)
T PF01207_consen  285 RRELNKCKTLEEFLELLEEAFLK  307 (309)
T ss_dssp             HHHHCCH-SHHHHHHHH------
T ss_pred             HHHHHhhCCHHHHhhhhcccccc
Confidence            999999999999999999 6664

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=99.59  E-value=1.7e-15  Score=124.95  Aligned_cols=88  Identities=19%  Similarity=0.289  Sum_probs=72.7

Q ss_pred             CccccccccccchhHHhhc----ccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHH
Q psy9518           1 MIGRGALIKPWIFQEIKEK----KLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLES   76 (132)
Q Consensus         1 MIGRGAlGnPWIF~qi~~~----~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~l   76 (132)
                      |||||+++|||||.++.+.    ..++|+..++++.+++|++.+.++    ..++..+|||+.||+|    |+|+++ ++
T Consensus       221 MigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~rk~~~~y~~----g~~~~~-~~  291 (318)
T TIGR00742       221 MVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ----GLSLNHITRHLLGLFQ----GKPGAK-QW  291 (318)
T ss_pred             EECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHc----cCCCHH-HH
Confidence            8999999999999999763    234688899999999999997543    3589999999999999    999999 99


Q ss_pred             HHHhhCCCCHH-HHHHHHHHHH
Q psy9518          77 TQKMNQRPPMY-HGRNELETLM   97 (132)
Q Consensus        77 R~~i~~~~~~~-e~~~~L~~~~   97 (132)
                      |++++++.+.. +..+.|+..+
T Consensus       292 r~~~~~~~~~~~~~~~~~~~~~  313 (318)
T TIGR00742       292 RRYLSENAPKAGAGIEVLETAL  313 (318)
T ss_pred             HHHHHhcccCCCCcHHHHHHHH
Confidence            99999977663 3445555444

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=99.42  E-value=2.9e-13  Score=112.07  Aligned_cols=78  Identities=19%  Similarity=0.338  Sum_probs=68.4

Q ss_pred             CccccccccccchhHHhhc----ccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHH
Q psy9518           1 MIGRGALIKPWIFQEIKEK----KLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLES   76 (132)
Q Consensus         1 MIGRGAlGnPWIF~qi~~~----~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~l   76 (132)
                      |||||+++|||+|.++...    ..++|+..++++.+.+|++.+.+ +|+   ++..+|||+.||++    |+|+++ ++
T Consensus       231 mIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~rk~~~~y~~----~~~~~~-~~  301 (333)
T PRK11815        231 MIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLA-QGG---RLNHITRHMLGLFQ----GLPGAR-AW  301 (333)
T ss_pred             EEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHH-cCc---hHHHHHHHHHHHHc----CCCCHH-HH
Confidence            8999999999999999763    12357899999999999999987 464   59999999999999    999999 99


Q ss_pred             HHHhhCCCCHH
Q psy9518          77 TQKMNQRPPMY   87 (132)
Q Consensus        77 R~~i~~~~~~~   87 (132)
                      |++++++.+.+
T Consensus       302 r~~~~~~~~~~  312 (333)
T PRK11815        302 RRYLSENAHKP  312 (333)
T ss_pred             HHHHHhhcccC
Confidence            99999987663

>KOG2335|consensus

Probab=97.04  E-value=0.0013  Score=55.63  Aligned_cols=81  Identities=19%  Similarity=0.209  Sum_probs=53.7

Q ss_pred             CccccccccccchhHHhhcccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHHHHHh
Q psy9518           1 MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLESTQKM   80 (132)
Q Consensus         1 MIGRGAlGnPWIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~lR~~i   80 (132)
                      |+|||++-|||||.. ..+   .+++   .+.+.++++...+++|+ . -...+|.|+..-+.    .+-.-...+|+.+
T Consensus       231 M~arglL~NPa~F~~-~~~---~~~~---~~~~~~~l~~~~e~~g~-~-~~~~~~~Hl~~m~~----~~~~~~~~~r~~~  297 (358)
T KOG2335|consen  231 MSARGLLYNPALFLT-AGY---GPTP---WGCVEEYLDIAREFGGL-S-SFSLIRHHLFKMLR----PLLSIHQDLRRDL  297 (358)
T ss_pred             EecchhhcCchhhcc-CCC---CCCH---HHHHHHHHHHHHHcCCC-c-hhhHHHHHHHHHHH----HHHhhhHHHHHHH
Confidence            899999999999965 111   2333   36778899888888876 3 45666777665444    3222221478888


Q ss_pred             hCCCCHHHHHHHHH
Q psy9518          81 NQRPPMYHGRNELE   94 (132)
Q Consensus        81 ~~~~~~~e~~~~L~   94 (132)
                      +..++...+.+.++
T Consensus       298 ~~~~~~~~~~~~l~  311 (358)
T KOG2335|consen  298 AALNSCESVIDFLE  311 (358)
T ss_pred             hhccchhhHHHHHH
Confidence            88886666655555

>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family

Probab=81.28  E-value=2.1  Score=27.20  Aligned_cols=37  Identities=5%  Similarity=-0.110  Sum_probs=27.6

Q ss_pred             CCCcCcHHHHHHhhCCCCHHHHHHHHHHHHhcCCcchH
Q psy9518          68 YIPVGLLESTQKMNQRPPMYHGRNELETLMTSSNCSDW  105 (132)
Q Consensus        68 g~pga~~~lR~~i~~~~~~~e~~~~L~~~~~~~~~~~~  105 (132)
                      -+.... .+|.++..+.|++++..+..+.=-....+.+
T Consensus        10 ~~~~d~-~L~~~l~~~~~~e~~~~lA~~~Gf~ft~~el   46 (64)
T TIGR03798        10 KVKTDP-DLREKLKAAEDPEDRVAIAKEAGFEFTGEDL   46 (64)
T ss_pred             HHHcCH-HHHHHHHHcCCHHHHHHHHHHcCCCCCHHHH
Confidence            555666 8999999999999999988764333344444

This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	1e-08
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	6e-05

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Length = 318

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 1   MIGRGALIKPWIFQEIKE----KKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRR 56
           ++ RGA+ +PWIF++IK+     K  + S  E     + ++   ++  G + + V   R+
Sbjct: 211 LVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKG-ERKAVVEMRK 269

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* Length = 350

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 1   MIGRGALIKPWIFQEIKEKKLFDISSA-ERFDILKEYVNYGLEHWGSDTRGVETTR 55
           M+GR     P++ +E  ++++F +     R ++ +    Y  E     T      R
Sbjct: 223 MLGRAVYEDPFVLEEA-DRRVFGLPRRPSRLEVARRMRAYLEEEVLKGTPPWAVLR 277

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	99.64
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	99.49
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	85.39
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	84.24
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	82.89
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	81.68

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=99.64  E-value=4.4e-16  Score=125.83  Aligned_cols=94  Identities=19%  Similarity=0.332  Sum_probs=86.7

Q ss_pred             CccccccccccchhHHhh----cccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHH
Q psy9518           1 MIGRGALIKPWIFQEIKE----KKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLES   76 (132)
Q Consensus         1 MIGRGAlGnPWIF~qi~~----~~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~l   76 (132)
                      ||||+++.|||+|.++..    +..++|+..++++++.+|++...+++|+ +.++..+|||+.||++    ++|+++ ++
T Consensus       211 ~iGR~~l~~P~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~----~~~~~~-~~  284 (318)
T 1vhn_A          211 LVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGE-RKAVVEMRKFLAGYTK----DLKGAR-RF  284 (318)
T ss_dssp             EESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHTTHHHHTT----TCTTHH-HH
T ss_pred             EECHHHHhCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHh----cCCChH-HH
Confidence            799999999999999987    4345689999999999999999999997 6799999999999999    999999 99


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcC
Q psy9518          77 TQKMNQRPPMYHGRNELETLMTSS  100 (132)
Q Consensus        77 R~~i~~~~~~~e~~~~L~~~~~~~  100 (132)
                      |++|++++|.+++.++|++++.+.
T Consensus       285 r~~~~~~~~~~~~~~~~~~~~~~~  308 (318)
T 1vhn_A          285 REKVMKIEEVQILKEMFYNFIKEV  308 (318)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999998643

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=99.49  E-value=9.8e-15  Score=119.88  Aligned_cols=90  Identities=16%  Similarity=0.184  Sum_probs=81.1

Q ss_pred             CccccccccccchhHHhhc---ccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHHH
Q psy9518           1 MIGRGALIKPWIFQEIKEK---KLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLEST   77 (132)
Q Consensus         1 MIGRGAlGnPWIF~qi~~~---~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~lR   77 (132)
                      ||||++++|||+|.++.+.   ..+.|+..++++.+++|++...+ +|+   ++..+|||+.||++    |+|+++ ++|
T Consensus       223 ~iGRa~l~~P~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~g~---~~~~~~kh~~~~~~----g~~~~~-~~r  293 (350)
T 3b0p_A          223 MLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEEEVL-KGT---PPWAVLRHMLNLFR----GRPKGR-LWR  293 (350)
T ss_dssp             EECHHHHHCGGGGTTHHHHTTCCSCCCCHHHHHHHHHHHHHHHHH-HTC---CHHHHHTTSTTTTT----TSTTHH-HHH
T ss_pred             EECHHHHhCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH-cCc---cHHHHHHHHHHHHc----cCCCHH-HHH
Confidence            7999999999999999863   23568999999999999999887 675   58999999999999    999999 999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhc
Q psy9518          78 QKMNQRPPMYHGRNELETLMTS   99 (132)
Q Consensus        78 ~~i~~~~~~~e~~~~L~~~~~~   99 (132)
                      +.|++++|++++.++|+++...
T Consensus       294 ~~l~~~~~~~~~~~~l~~~~~~  315 (350)
T 3b0p_A          294 RLLSEGRSLQALDRALRLMEEE  315 (350)
T ss_dssp             HHHHHHCSHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHhhh
Confidence            9999999999999999998643

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=85.39  E-value=0.2  Score=41.06  Aligned_cols=25  Identities=16%  Similarity=0.131  Sum_probs=20.2

Q ss_pred             CccccccccccchhHHhhcc-cCCCC
Q psy9518           1 MIGRGALIKPWIFQEIKEKK-LFDIS   25 (132)
Q Consensus         1 MIGRGAlGnPWIF~qi~~~~-~~~ps   25 (132)
                      ||||+++.|||++.++.++. +.+|+
T Consensus       328 ~~gR~~l~~P~l~~k~~~g~~l~~~~  353 (376)
T 1icp_A          328 AYGRLFISNPDLPKRFELNAPLNKYN  353 (376)
T ss_dssp             EESHHHHHCTTHHHHHHHTCCCCCCC
T ss_pred             eecHHHHhCccHHHHHHcCCCCCCCC
Confidence            68999999999999998763 34444

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=84.24  E-value=0.06  Score=44.25  Aligned_cols=52  Identities=17%  Similarity=0.190  Sum_probs=42.0

Q ss_pred             cccccchhHHhhcccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhh
Q psy9518           7 LIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLS   63 (132)
Q Consensus         7 lGnPWIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k   63 (132)
                      +|.||||.....+.   +...+.++.+.+|++.....+|.  ..+.++|+++.||+|
T Consensus       300 iGr~~l~~l~~~G~---~gv~~~l~~l~~el~~~m~~~G~--~~i~el~~~~~~y~k  351 (352)
T 3sgz_A          300 LGRPILWGLACKGE---DGVKEVLDILTAELHRCMTLSGC--QSVAEISPDLIQFSR  351 (352)
T ss_dssp             ESHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTC--SBGGGCCGGGBSSCC
T ss_pred             ECHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHhCC--CcHHHHhhhcchhcc
Confidence            57799998664442   44567889999999999999996  368999999999986

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=82.89  E-value=0.29  Score=40.47  Aligned_cols=25  Identities=24%  Similarity=0.207  Sum_probs=20.3

Q ss_pred             CccccccccccchhHHhhcc-cCCCC
Q psy9518           1 MIGRGALIKPWIFQEIKEKK-LFDIS   25 (132)
Q Consensus         1 MIGRGAlGnPWIF~qi~~~~-~~~ps   25 (132)
                      ||||+++.|||++.++.++. +.+|+
T Consensus       346 ~igR~~l~dP~l~~k~~~g~~l~~~~  371 (402)
T 2hsa_B          346 SYGRLFISNPDLVMRIKLNAPLNKYN  371 (402)
T ss_dssp             EESHHHHHCTTHHHHHHHTCCCCCCC
T ss_pred             eecHHHHhCchHHHHHHhCCCCCCCC
Confidence            68999999999999998863 34454

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=81.68  E-value=0.35  Score=39.66  Aligned_cols=25  Identities=16%  Similarity=0.201  Sum_probs=20.1

Q ss_pred             CccccccccccchhHHhhcc-cCCCC
Q psy9518           1 MIGRGALIKPWIFQEIKEKK-LFDIS   25 (132)
Q Consensus         1 MIGRGAlGnPWIF~qi~~~~-~~~ps   25 (132)
                      ||||+++.|||++.++.++. +.+|+
T Consensus       326 ~igR~~l~~P~l~~k~~~g~~l~~~~  351 (377)
T 2r14_A          326 AFGRPFIANPDLPERFRLGAALNEPD  351 (377)
T ss_dssp             EESHHHHHCTTHHHHHHHTCCCCCCC
T ss_pred             eecHHHHhCchHHHHHHcCCCCCCCC
Confidence            68999999999999998763 33444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d1ep3a_	311	c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco	1e-04

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 311

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

 Score = 38.1 bits (87), Expect = 1e-04
 Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 1   MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYV 37
            +G      P++  +I   KL ++    R + L+  +
Sbjct: 268 AVGTANFADPFVCPKII-DKLPELMDQYRIESLESLI 303

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	99.84
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	93.64

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=1.7e-21  Score=155.90  Aligned_cols=93  Identities=19%  Similarity=0.331  Sum_probs=87.3

Q ss_pred             CccccccccccchhHHhhc----ccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHH
Q psy9518           1 MIGRGALIKPWIFQEIKEK----KLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLES   76 (132)
Q Consensus         1 MIGRGAlGnPWIF~qi~~~----~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~l   76 (132)
                      |||||+++|||||.++.+.    ...+|+..++++++.+|++.+.++||+ ..++..+|||+.||++    |+|+++ ++
T Consensus       207 MiGRgal~nP~if~~i~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~-~~~l~~~rkhl~~~~k----g~p~ak-~~  280 (305)
T d1vhna_         207 LVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGE-RKAVVEMRKFLAGYTK----DLKGAR-RF  280 (305)
T ss_dssp             EESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHTTHHHHTT----TCTTHH-HH
T ss_pred             ehhHHHHHhhhHhhhhhhhhcCCCcccchhHHHHHhHHHHHHHHHHhcCc-chHHHHHHHHHHHHHc----CCCcHH-HH
Confidence            9999999999999999763    456789999999999999999999998 7999999999999999    999999 99


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhc
Q psy9518          77 TQKMNQRPPMYHGRNELETLMTS   99 (132)
Q Consensus        77 R~~i~~~~~~~e~~~~L~~~~~~   99 (132)
                      |+.|++++|.+++.+++++|+.+
T Consensus       281 R~~l~~~~~~~el~~~l~~~~~e  303 (305)
T d1vhna_         281 REKVMKIEEVQILKEMFYNFIKE  303 (305)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999874

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=93.64  E-value=0.0086  Score=44.88  Aligned_cols=17  Identities=18%  Similarity=0.532  Sum_probs=15.9

Q ss_pred             CccccccccccchhHHh
Q psy9518           1 MIGRGALIKPWIFQEIK   17 (132)
Q Consensus         1 MIGRGAlGnPWIF~qi~   17 (132)
                      |||||+++|||||.+|.
T Consensus       268 ~ig~~~~~~P~i~~~I~  284 (311)
T d1ep3a_         268 AVGTANFADPFVCPKII  284 (311)
T ss_dssp             EECTHHHHCTTHHHHHH
T ss_pred             EecHHHHcCChHHHHHH
Confidence            79999999999999986