Psyllid ID: psy9553

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280--
MCGPGFNKSNTYLLVSGPPPIFLLDAKLRISSGPPPIFLLDAKLRIPSVVISPPLEEVQEALITAGKHITGVAKGVAQWTGGEAQHITGVAKGVAQWTGGEAQRKKKPSFPLQPRNFYSHVMENKEVVKTLSLLSTCTLDIKPALVSFVEKWSPYKFLWENEMINRRDVTNVGLVESEHALRRHGELEAELNIEPDLHTFGSCIVISVEQLKFGLMTEINSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIMEVTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIEAKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVGGDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQEQLELCQKSLSGYLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVRAEGSVESWLTCLLQMAQQSLHSIIRTAYTSLNDPNFLLLQFLDKMPAQIGILGIQMIWTRDAESALSQARHDKKMMSETNNRFLELLNTLIDQTTRDLTKIERIKFETLITIHVHQRDIFDILGPEEVQWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAAWLRGRSAKEASVFHHLFEESFPVLYAWGAANLSYVMKVLQVNYVQQMLILLQGLVPTSTPTVTEAESTEEGGAPSPAPLEEDEEAKSEQDLCTKLSPEHLHRLYVFALVWGMGAFLELPGRVKFDLFLREKLATLLDLPSNAGDPQATVFDFYVNDEGGWEPWSSMVNTYSYPENSTPDYSSILVPIADNVRIDYLVNCIAKQEHAVLLIGESGKL
cccHHHHHHHHHHHHHcccHHHHHHHHHccccccccEEEEEEEEEcccEEEEccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccEEccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccHHHHHHHHHHHccccccEEcccccccEEEEEcccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccccHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHcccccccEEEEccccccccccccEEEEEccccccccccccccccEEEEcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccEEEEEEcccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHcccEEEEEcccccc
ccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEEcccEEEcccHHHHHHHHHHHHHHHHHHHcccHHHcHHHcHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccEEEEccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccEEEcccccEHHHHHHccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccEEEcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHcccccHHHHHHHHHHHHHHccEEEccccccEEEEEEEccccEEEccccEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHEEEHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccHEHHHEHEEHHHHHHHHHHHHcccccHHcccHHHHHHHHHHHHHHcccccEEEEccccccccHHHcccccccccccccHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHcccccEEEcccccccccccccEEEEEccccccccccEEccccEEEEccccccccHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccEEEEEEEcccccEEccHcccccEEccccccccHHHEEEcccccHHHHHHHHHHHHccccEEEEcccccc
mcgpgfnksntyllvsgpppiflldaklrissgpppiflldaklripsvvispplEEVQEALITAGKHITGVAKGVaqwtggeaqHITGVAKGVaqwtggeaqrkkkpsfplqprnfysHVMENKEVVKTLSLLSTCTLDIKPALVSFVekwspykflweneminrrdvtnvglvesEHALRRHgeleaelniepdlhtfgsCIVISVEQLKFGLMTEINSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVItrydlpvdkedleQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYcheyrtsgpmmpglspreaSDRLILFQNRFDGMWRKLQtyqsgeelfglpttdypELAQIRKELNLLQKLYKLYNDVIDrvssyydipwgevNIEEINNELMEFQNRCRKlpkglkewpaFHALKRTIDDFNDMCPLLELMankamkprhWQRIMEVTKYNFELDSESFCLKnileapllkcKEDIEDICISAMKEKDIEAKLRQVTNEWSVHELTFMTFnnrgelllrgdttaETIGQLEDSLMVLGSLLsnrynapfrKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVGGDIAKQLPKEAKRFSKIDKSWQKIMQRahetpgvvsccvgDDMLKLLLPHLQEQLELCQKSLSGYLEkkrmmfprfffvsdpALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVRAEGSVESWLTCLLQMAQQSLHSIIRTAytslndpnfLLLQFLdkmpaqigilGIQMIWTRDAESALSQARHDKKMMSETNNRFLELLNTLIDQTTRDLTKIERIKFETLITIHVHQrdifdilgpeevQWLTRKTTCIHTLMAALSeveephremrmnpkAITAAQMFGrldvatndwtDGIFSALWRKtlklkpgdhvwlvldgpvdsIWIENLnsvlddnrtltlanGDRLSMALAVKIIfephnidnaspatvsrngmvymsssgldwsPIVAAWLRGRSAKEASVFHHLFEESFPVLYAWGAANLSYVMKVLQVNYVQQMLILLQglvptstptvteaesteeggapspapleedeeaKSEQDLctklspehlHRLYVFALVWGMgaflelpgrvkFDLFLREKLATlldlpsnagdpqatvfdfyvndeggwepwssmvntysypenstpdyssilvpiadnVRIDYLVNCIAKQEHAVLLIGESGKL
mcgpgfnksntylLVSGPPPIFLLDAKLRISSGPPPIFLLDAKLRIPSVVISPPLEEVQEALITAGKHITGVAKGVAQWTGGEAQHITGVAKGVAQWTGGeaqrkkkpsfplqpRNFYSHVMENKEVVKTLSLLSTCTLDIKPALVSFVEKWSPYKFLWENEMINRRDVTNVGLVESEHALRRHGELEAELNIEPDLHTFGSCIVISVEQLKFGLMTEINSCNRRIAFLLRKKYHREMDYVYAVMnemdrkldrtitdlddvRMIMELLKRirdqevdmelkiepieeaynvitrydlpvdkeDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRtsgpmmpglspREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMCPLLELMankamkprHWQRIMEVTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIEAKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVGGDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQEQLELCQKSLSGYLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMthivssegetIQLERAVRAEGSVESWLTCLLQMAQQSLHSIIRTAYTSLNDPNFLLLQFLDKMPAQIGILGIQMIWTRDAESALSQARHDKKMMSETNNRFLELLNTLIDQTTRDLTKIERIKFETLITIHVHQRDIFDILGPEEVQWLTRKTTCIHTLMAALseveephreMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAAWLRGRSAKEASVFHHLFEESFPVLYAWGAANLSYVMKVLQVNYVQQMLILLQGLVPTSTPTVTEaesteeggapspaPLEEDEEAKSEQDLCTKLSPEHLHRLYVFALVWGMGAFLELPGRVKFDLFLREKLATLldlpsnagdpQATVFDFYVNDEGGWEPWSSMVNTYSYPENSTPDYSSILVPIADNVRIDYLVNCIAKQEHAVLLIGESGKL
MCGPGFNKSNTYLLVSGPPPIFLLDAKLRISSGPPPIFLLDAKLRIPSVVISPPLEEVQEALITAGKHITGVAKGVAQWTGGEAQHITGVAKGVAQWTGGEAQRKKKPSFPLQPRNFYSHVMENKEVVKTLSLLSTCTLDIKPALVSFVEKWSPYKFLWENEMINRRDVTNVGLVESEHALRRHGELEAELNIEPDLHTFGSCIVISVEQLKFGLMTEINSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKElnllqklyklynDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIMEVTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIEAKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVGGDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMlklllphlqeqlelCQKSLSGYLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVRAEGSVESWLTCLLQMAQQSLHSIIRTAYTSLNDPNFLLLQFLDKMPAQIGILGIQMIWTRDAESALSQARHDKKMMSETNNRFLELLNTLIDQTTRDLTKIERIKFETLITIHVHQRDIFDILGPEEVQWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAAWLRGRSAKEASVFHHLFEESFPVLYAWGAANLSYVMKVLQVNYVQQMLILLQGLVPTSTPTVTEAESTEEGGAPSPAPLEEDEEAKSEQDLCTKLSPEHLHRLYVFALVWGMGAFLELPGRVKFDLFLREKLATLLDLPSNAGDPQATVFDFYVNDEGGWEPWSSMVNTYSYPENSTPDYSSILVPIADNVRIDYLVNCIAKQEHAVLLIGESGKL
*********NTYLLVSGPPPIFLLDAKLRISSGPPPIFLLDAKLRIPSVVISPPLEEVQEALITAGKHITGVAKGVAQWTGGEAQHITGVAKGVAQWTG***************RNFYSHVMENKEVVKTLSLLSTCTLDIKPALVSFVEKWSPYKFLWENEMINRRDVTNVGLVESEHALRRHGELEAELNIEPDLHTFGSCIVISVEQLKFGLMTEINSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYR****************RLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIMEVTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIEAKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVGGDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQEQLELCQKSLSGYLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVRAEGSVESWLTCLLQMAQQSLHSIIRTAYTSLNDPNFLLLQFLDKMPAQIGILGIQMIWTRD*******************NRFLELLNTLIDQTTRDLTKIERIKFETLITIHVHQRDIFDILGPEEVQWLTRKTTCIHTLMAALSE*************AITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAAWLRGRSAKEASVFHHLFEESFPVLYAWGAANLSYVMKVLQVNYVQQMLILLQGLVP*************************************KLSPEHLHRLYVFALVWGMGAFLELPGRVKFDLFLREKLATLLDLPSNAGDPQATVFDFYVNDEGGWEPWSSMVNTYSYPENSTPDYSSILVPIADNVRIDYLVNCIAKQEHAVLLIG*****
MCGPGFNKSNTYLLVSGPPPIFLLDA*****SGPPPIFLLDAKLRIPSVVISPPLEEVQEALITAGKHITGVAKGVAQWTGGEAQHITG*********************PLQPRNFYSHVMENKEVVKTLSLLSTCTLDIKPALVSFVEKWSPYKFLWENEMINRRDVTNVGLVESEHALRRHGELEAELNIEPDLHTFGSCIVISVEQLKFGLMTEINSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMT**************DLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIMEVTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIEAKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVGGDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQEQLELCQKSLSGYLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVRAEGSVESWLTCLLQMAQQSLHSIIRTAYTSLNDPNFLLLQFLDKMPAQIGILGIQMIWTRDAESALSQARHDKKMMSETNNRFLELLNTLIDQTTRDLTKIERIKFETLITIHVHQRDIFDILGPEEVQWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAAWLRGRSAKEASVFHHLFEESFPVLYAWGAANLSYVMKVLQVNYVQQMLILLQGLVPTSTPTVTEAESTEEGGAPSPAPLEEDEE*KS**DLCTKLSPEHLHRLYVFALVWGMGAFLELPGRVKFDLFLREKLATLLDLPSNAGDPQATVFDFYVNDEGGWEPWSSMVNTYSYPENSTPDYSSILVPIADNVRIDYLVNCIAKQEHAVLLIGESG**
MCGPGFNKSNTYLLVSGPPPIFLLDAKLRISSGPPPIFLLDAKLRIPSVVISPPLEEVQEALITAGKHITGVAKGVAQWTGGEAQHITGVAKGVA**************FPLQPRNFYSHVMENKEVVKTLSLLSTCTLDIKPALVSFVEKWSPYKFLWENEMINRRDVTNVGLVESEHALRRHGELEAELNIEPDLHTFGSCIVISVEQLKFGLMTEINSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIMEVTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIEAKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVGGDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQEQLELCQKSLSGYLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVRAEGSVESWLTCLLQMAQQSLHSIIRTAYTSLNDPNFLLLQFLDKMPAQIGILGIQMIWTRDAESALSQARHDKKMMSETNNRFLELLNTLIDQTTRDLTKIERIKFETLITIHVHQRDIFDILGPEEVQWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAAWLRGRSAKEASVFHHLFEESFPVLYAWGAANLSYVMKVLQVNYVQQMLILLQGLVPTS********************************LCTKLSPEHLHRLYVFALVWGMGAFLELPGRVKFDLFLREKLATLLDLPSNAGDPQATVFDFYVNDEGGWEPWSSMVNTYSYPENSTPDYSSILVPIADNVRIDYLVNCIAKQEHAVLLIGESGKL
*CGPGFNKSNTYLLVSGPPPIFLLDAKLRISSGPPPIFLLDAKLRIPSVVISPPLEEVQEALITAGKHITGVAKGVAQWTGGEAQHITGVAKGVAQWTGGEAQRKKKPSFPLQPRNFYSHVMENKEVVKTLSLLSTCTLDIKPALVSFVEKWSPYKFLWENEMINRRDVTNVGLVESEHALRRHGELEAELNIEPDLHTFGSCIVISVEQLKFGLMTEINSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIMEVTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIEAKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVGGDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQEQLELCQKSLSGYLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVRAEGSVESWLTCLLQMAQQSLHSIIRTAYTSLNDPNFLLLQFLDKMPAQIGILGIQMIWTRDAESALSQARHDKKMMSETNNRFLELLNTLIDQTTRDLTKIERIKFETLITIHVHQRDIFDILGPEEVQWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAAWLRGRSAKEASVFHHLFEESFPVLYAWGAANLSYVMKVLQVNYVQQMLILLQGLVPTSTPTVTEAESTEEGGAPSPAPLEEDEEAKSEQDLCTKLSPEHLHRLYVFALVWGMGAFLELPGRVKFDLFLREKLATLLDLPSNAGDPQATVFDFYVNDEGGWEPWSSMVNTYSYPENSTPDYSSILVPIADNVRIDYLVNCIAKQEHAVLLIGE****
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SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MCGPGFNKSNTYLLVSGPPPIFLLDAKLRISSGPPPIFLLDAKLRIPSVVISPPLEEVQEALITAGKHITGVAKGVAQWTGGEAQHITGVAKGVAQWTGGEAQRKKKPSFPLQPRNFYSHVMENKEVVKTLSLLSTCTLDIKPALVSFVEKWSPYKFLWENEMINRRDVTNVGLVESEHALRRHGELEAELNIEPDLHTFGSCIVISVEQLKFGLMTEINSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIMEVTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIEAKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVGGDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQEQLELCQKSLSGYLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVRAEGSVESWLTCLLQMAQQSLHSIIRTAYTSLNDPNFLLLQFLDKMPAQIGILGIQMIWTRDAESALSQARHDKKMMSETNNRFLELLNTLIDQTTRDLTKIERIKFETLITIHVHQRDIFDILGPEEVQWLTRKTTCIHTLMAALSEVEEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKLKPGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAAWLRGRSAKEASVFHHLFEESFPVLYAWGAANLSYVMKVLQVNYVQQMLILLQGLVPTSTPTVTEAESTEEGGAPSPAPLEEDEEAKSEQDLCTKLSPEHLHRLYVFALVWGMGAFLELPGRVKFDLFLREKLATLLDLPSNAGDPQATVFDFYVNDEGGWEPWSSMVNTYSYPENSTPDYSSILVPIADNVRIDYLVNCIAKQEHAVLLIGESGKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1282 2.2.26 [Sep-21-2011]
Q8TE73 4624 Dynein heavy chain 5, axo yes N/A 0.691 0.191 0.531 0.0
Q8VHE6 4621 Dynein heavy chain 5, axo yes N/A 0.691 0.191 0.521 0.0
Q96JB1 4490 Dynein heavy chain 8, axo no N/A 0.684 0.195 0.511 0.0
Q91XQ0 4731 Dynein heavy chain 8, axo no N/A 0.686 0.186 0.515 0.0
Q39575 4485 Dynein gamma chain, flage N/A N/A 0.663 0.189 0.365 1e-163
Q9SMH3 4625 Dynein-1-alpha heavy chai N/A N/A 0.684 0.189 0.281 5e-96
Q8IVF4 4471 Dynein heavy chain 10, ax no N/A 0.666 0.191 0.266 2e-95
Q9P225 4427 Dynein heavy chain 2, axo no N/A 0.609 0.176 0.262 9e-81
Q9MBF8 4513 Dynein-1-beta heavy chain N/A N/A 0.604 0.171 0.253 4e-76
P0C6F1 4456 Dynein heavy chain 2, axo no N/A 0.606 0.174 0.255 6e-76
>sp|Q8TE73|DYH5_HUMAN Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3 Back     alignment and function desciption
 Score =  950 bits (2455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/913 (53%), Positives = 636/913 (69%), Gaps = 27/913 (2%)

Query: 36   PIFLLDAKLRIPSVVISPPLEEVQEALITAGKHITGVAKGVAQWTGGEAQHITGVAKGVA 95
            PIF     L IP++V++P LE+VQ+ L  A + I  V KGV QW+           + +A
Sbjct: 1008 PIFRASVTLAIPNIVMAPALEDVQQTLNKAVECIISVPKGVRQWSSELLSKKKIQERKMA 1067

Query: 96   QWTGGEAQRKK-----------------KPSFPLQPRNFYSHVMENKEVVKTLSLLSTCT 138
                 E                          P+Q +N+Y +V ENKE+VK +S+LST  
Sbjct: 1068 ALQSNEDSDSDVEMGENELQDTLEIASVNLPIPVQTKNYYKNVSENKEIVKLVSVLSTII 1127

Query: 139  LDIKPALVSFVEKWSPYKFLWEN---EMINRRDVTNVGLVESEHALRRHGELEAELNIEP 195
               K  +++ ++ +  Y  +W+    E I      +  L E E  +     LE E+N EP
Sbjct: 1128 NSTKKEVITSMDCFKRYNHIWQKGKEEAIKTFITQSPLLSEFESQILYFQNLEQEINAEP 1187

Query: 196  DLHTFGSCIVISVEQLKFGLMTEINSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRT 255
            +    GS I +    LKF L  E  +    I     KKY  EM+ ++ ++ E ++KL+R 
Sbjct: 1188 EYVCVGS-IALYTADLKFALTAETKAWMVVIGRHCNKKYRSEMENIFMLIEEFNKKLNRP 1246

Query: 256  ITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTW 315
            I DLDD+R+ M  LK IR++++ ++ ++ PIEE+Y ++ RY L + +E++++VD+L Y W
Sbjct: 1247 IKDLDDIRIAMAALKEIREEQISIDFQVGPIEESYALLNRYGLLIAREEIDKVDTLHYAW 1306

Query: 316  QKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREASD 375
            +KLLARA      L ++QP F+++L   +  F QD   +  +Y  +GPM  GL P+EASD
Sbjct: 1307 EKLLARAGEVQNKLVSLQPSFKKELISAVEVFLQDCHQFYLDYDLNGPMASGLKPQEASD 1366

Query: 376  RLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDRV 435
            RLI+FQN+FD ++RK  TY  GEELFGLP T YP+L +I+K+LNLLQK+Y LYN VI+ V
Sbjct: 1367 RLIMFQNQFDNIYRKYITYTGGEELFGLPATQYPQLLEIKKQLNLLQKIYTLYNSVIETV 1426

Query: 436  SSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMCPLLELM 495
            +SYYDI W EVNIE+INNEL+EFQNRCRKLP+ LK+W AF  LK+ IDDF++ CPLLE M
Sbjct: 1427 NSYYDILWSEVNIEKINNELLEFQNRCRKLPRALKDWQAFLDLKKIIDDFSECCPLLEYM 1486

Query: 496  ANKAMKPRHWQRIMEVTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIEA 555
            A+KAM  RHW+RI  +T ++ ++ +ESF L+NI+EAPLLK KE+IEDICISA+KE+DIE 
Sbjct: 1487 ASKAMMERHWERITTLTGHSLDVGNESFKLRNIMEAPLLKYKEEIEDICISAVKERDIEQ 1546

Query: 556  KLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRK 615
            KL+QV NEW     TF +F  RGELLLRGD+T+E I  +EDSLM+LGSLLSNRYN PF+ 
Sbjct: 1547 KLKQVINEWDNKTFTFGSFKTRGELLLRGDSTSEIIANMEDSLMLLGSLLSNRYNMPFKA 1606

Query: 616  QIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVGGDIAKQLPKEAKRFSKIDKSWQKIM 675
            QIQ+WV  LSN+ +I+E W+ VQN+W+YLEAVFVGGDIAKQLPKEAKRFS IDKSW KIM
Sbjct: 1607 QIQKWVQYLSNSTDIIESWMTVQNLWIYLEAVFVGGDIAKQLPKEAKRFSNIDKSWVKIM 1666

Query: 676  QRAHETPGVVSCCVGDDMLKLLLPHLQEQLELCQKSLSGYLEKKRMMFPRFFFVSDPALL 735
             RAHE P VV CCVGD+ L  LLPHL +QLE+CQKSL+GYLEKKR+ FPRFFFVSDPALL
Sbjct: 1667 TRAHEVPSVVQCCVGDETLGQLLPHLLDQLEICQKSLTGYLEKKRLCFPRFFFVSDPALL 1726

Query: 736  EILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVRAEGSVE 795
            EILGQASDSHTIQ HLL++FDN K+V+FHE+ Y+++  I S EGETI+L++ V AEG+VE
Sbjct: 1727 EILGQASDSHTIQAHLLNVFDNIKSVKFHEKIYDRILSISSQEGETIELDKPVMAEGNVE 1786

Query: 796  SWLTCLLQMAQQSLHSIIRTAYTSLNDPNFLLLQFLDKMPAQIGILGIQMIWTRDAESAL 855
             WL  LL+ +Q SLH +IR A  ++ +  F L +FL   PAQ+G+LGIQMIWTRD+E AL
Sbjct: 1787 VWLNSLLEESQSSLHLVIRQAAANIQETGFQLTEFLSSFPAQVGLLGIQMIWTRDSEEAL 1846

Query: 856  SQARHDKKMMSETNNRFLELLNTLIDQTTRDLTKIERIKFETLITIHVHQRDIFD----- 910
              A+ DKK+M +TN  FLELLNTLID TTRDL+  ER+K+ETLITIHVHQRDIFD     
Sbjct: 1847 RNAKFDKKIMQKTNQAFLELLNTLIDVTTRDLSSTERVKYETLITIHVHQRDIFDDLCHM 1906

Query: 911  -ILGPEEVQWLTR 922
             I  P + +WL +
Sbjct: 1907 HIKSPMDFEWLKQ 1919
Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Required for structural and functional integrity of the cilia of ependymal cells lining the brain ventricles.
Homo sapiens (taxid: 9606)
>sp|Q8VHE6|DYH5_MOUSE Dynein heavy chain 5, axonemal OS=Mus musculus GN=Dnah5 PE=1 SV=2 Back     alignment and function description
>sp|Q96JB1|DYH8_HUMAN Dynein heavy chain 8, axonemal OS=Homo sapiens GN=DNAH8 PE=1 SV=2 Back     alignment and function description
>sp|Q91XQ0|DYH8_MOUSE Dynein heavy chain 8, axonemal OS=Mus musculus GN=Dnahc8 PE=2 SV=2 Back     alignment and function description
>sp|Q39575|DYHG_CHLRE Dynein gamma chain, flagellar outer arm OS=Chlamydomonas reinhardtii GN=ODA2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SMH3|DYH1A_CHLRE Dynein-1-alpha heavy chain, flagellar inner arm I1 complex OS=Chlamydomonas reinhardtii GN=DHC1 PE=1 SV=1 Back     alignment and function description
>sp|Q8IVF4|DYH10_HUMAN Dynein heavy chain 10, axonemal OS=Homo sapiens GN=DNAH10 PE=1 SV=4 Back     alignment and function description
>sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3 Back     alignment and function description
>sp|Q9MBF8|DYH1B_CHLRE Dynein-1-beta heavy chain, flagellar inner arm I1 complex OS=Chlamydomonas reinhardtii GN=DHC10 PE=1 SV=1 Back     alignment and function description
>sp|P0C6F1|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus musculus GN=Dnah2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1282
242023054 4696 dynein heavy chain, cytosolic, putative 0.700 0.191 0.751 0.0
328706382 4633 PREDICTED: dynein heavy chain 5, axonema 0.682 0.188 0.769 0.0
332027529 4602 Dynein heavy chain 5, axonemal [Acromyrm 0.686 0.191 0.743 0.0
270003052 3409 hypothetical protein TcasGA2_TC000076 [T 0.683 0.256 0.763 0.0
307191760 4617 Dynein heavy chain 5, axonemal [Harpegna 0.686 0.190 0.743 0.0
189235485 4686 PREDICTED: similar to dynein heavy chain 0.683 0.186 0.742 0.0
357627332 3597 putative dynein heavy chain [Danaus plex 0.675 0.240 0.743 0.0
195037857 4711 GH19310 [Drosophila grimshawi] gi|193894 0.683 0.185 0.742 0.0
195108107 4680 GI23526 [Drosophila mojavensis] gi|19391 0.683 0.187 0.741 0.0
195395448 4666 GJ10278 [Drosophila virilis] gi|19414305 0.687 0.188 0.735 0.0
>gi|242023054|ref|XP_002431951.1| dynein heavy chain, cytosolic, putative [Pediculus humanus corporis] gi|212517302|gb|EEB19213.1| dynein heavy chain, cytosolic, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score = 1439 bits (3726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 700/932 (75%), Positives = 782/932 (83%), Gaps = 34/932 (3%)

Query: 23   LLDAKLRISSGPPPIFLLDAKLRIPSVVISPPLEEVQEALITAGKHITGVAKGVAQWTGG 82
            L D    I   P P+F++ A L IP+V I P LEE+QEALI+AGK IT V+KGV QWTGG
Sbjct: 1031 LQDPSHPIRKKPEPVFIIQAILMIPNVTIKPTLEEIQEALISAGKFITSVSKGVGQWTGG 1090

Query: 83   EAQHITGVAKGVAQWTG---------------------GEAQRK-------KKPSFPLQP 114
            + Q      +   +  G                      E +R+       +K  FP Q 
Sbjct: 1091 KVQAAPDRKRSWKKLAGQQNLDLKSKMKECDSSKVETPKERRRRLYKFHSEEKSPFPTQE 1150

Query: 115  RNFYSHVMENKEVVKTLSLLSTCTLDIKPALVSFVEKWSPYKFLWENEMINRRDVTNVGL 174
            +NFY+HVMENKEVVKTLSLLSTC  DIK  + +F+ +W+PYK LW N+  NR+D+  + L
Sbjct: 1151 KNFYNHVMENKEVVKTLSLLSTCIQDIKKEMNTFMARWNPYKILWTNDHSNRKDLLTMTL 1210

Query: 175  VESEHALRRHGELEAELNIEPDLHTFGSCIVISVEQLKFGLMTEINSCNRRIAFLLRKKY 234
               E  L+++GELE+ L+IE DL   GSC+V+S ++LKFGL+TE+ SC  RI   L+KKY
Sbjct: 1211 QNFESLLQKYGELESNLSIENDLFYLGSCLVVSTDRLKFGLLTEVKSCTHRIGQALKKKY 1270

Query: 235  HREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLKRIRDQEVDMELKIEPIEEAYNVIT 294
             REMDYVYAV+NE+DRKLDR I DLDDVR+IM+ LK+IR+QEVDME KI+PIEEA+NV+ 
Sbjct: 1271 SREMDYVYAVINEIDRKLDRQIRDLDDVRLIMDTLKKIREQEVDMERKIDPIEEAFNVVA 1330

Query: 295  RYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLTTMQPRFEQDLADNLAQFRQDKVDY 354
            RY++P+++  L+ V++LRYTWQKL  RA+  NV L  MQP FE DL  NL  F+QD +DY
Sbjct: 1331 RYEIPLEQSTLDLVENLRYTWQKLQNRALEVNVSLLNMQPTFEADLKRNLDAFKQDNIDY 1390

Query: 355  CHEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRKLQTYQSGEELFGLPTTDYPELAQI 414
            CHEYRTSGPMMPGL+PREASDRLILFQNRFDGMWRKL TYQSGEELFGLP TDYPELAQI
Sbjct: 1391 CHEYRTSGPMMPGLTPREASDRLILFQNRFDGMWRKLMTYQSGEELFGLPPTDYPELAQI 1450

Query: 415  RKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPA 474
            RKELNLLQKLYKLYNDVID VSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPA
Sbjct: 1451 RKELNLLQKLYKLYNDVIDGVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPA 1510

Query: 475  FHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIMEVTKYNFELDSESFCLKNILEAPLL 534
            FHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIMEVT + F+L+SE FCLKNILEAPLL
Sbjct: 1511 FHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIMEVTNFVFDLESEGFCLKNILEAPLL 1570

Query: 535  KCKEDIEDICISAMKEKDIEAKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIGQL 594
            K KEDIEDICISAMKEKDIEAKLRQVT+EWSVHELTFMTFNNRGELLLRGDTTAETIGQL
Sbjct: 1571 KYKEDIEDICISAMKEKDIEAKLRQVTSEWSVHELTFMTFNNRGELLLRGDTTAETIGQL 1630

Query: 595  EDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVGGDIA 654
            EDSLMVLGSL+SNRYNAPFRKQIQQWV+DLSNTN+ILERWLLVQNMWVYLEAVFVGGDIA
Sbjct: 1631 EDSLMVLGSLMSNRYNAPFRKQIQQWVYDLSNTNDILERWLLVQNMWVYLEAVFVGGDIA 1690

Query: 655  KQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQEQLELCQKSLSG 714
            KQLPKEAKRFSKIDKSWQKIMQRAHETPGVV+CCVGDD+LK LLPHLQEQLELCQKSLSG
Sbjct: 1691 KQLPKEAKRFSKIDKSWQKIMQRAHETPGVVNCCVGDDLLKQLLPHLQEQLELCQKSLSG 1750

Query: 715  YLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHI 774
            YLE+KRMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNT+ V+FH+ EYNKMT I
Sbjct: 1751 YLERKRMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTRYVKFHDIEYNKMTAI 1810

Query: 775  VSSEGETIQLERAVRAEGSVESWLTCLLQMAQQSLHSIIRTAYTSLNDPNFLLLQFLDKM 834
            +SSEGE I LERAVRAEGSVE+WLT LLQ AQ SLHSIIRTAYT +ND NF LL FLDKM
Sbjct: 1811 ISSEGEQISLERAVRAEGSVETWLTNLLQTAQSSLHSIIRTAYTMINDSNFNLLSFLDKM 1870

Query: 835  PAQIGILGIQMIWTRDAESALSQARHDKKMMSETNNRFLELLNTLIDQTTRDLTKIERIK 894
            PAQ+GILGIQMIWTRDAE+AL QAR DK+MM ETNN+FL+LLNTLIDQTTR+LTKI+RIK
Sbjct: 1871 PAQVGILGIQMIWTRDAETALMQARQDKRMMPETNNKFLDLLNTLIDQTTRELTKIDRIK 1930

Query: 895  FETLITIHVHQRDIFDIL------GPEEVQWL 920
            FETLITI VHQRDIFDIL       P + +WL
Sbjct: 1931 FETLITIQVHQRDIFDILCRINLRSPNDFEWL 1962

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328706382|ref|XP_001943595.2| PREDICTED: dynein heavy chain 5, axonemal-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|332027529|gb|EGI67606.1| Dynein heavy chain 5, axonemal [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|270003052|gb|EEZ99499.1| hypothetical protein TcasGA2_TC000076 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307191760|gb|EFN75202.1| Dynein heavy chain 5, axonemal [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|189235485|ref|XP_967934.2| PREDICTED: similar to dynein heavy chain [Tribolium castaneum] Back     alignment and taxonomy information
>gi|357627332|gb|EHJ77068.1| putative dynein heavy chain [Danaus plexippus] Back     alignment and taxonomy information
>gi|195037857|ref|XP_001990377.1| GH19310 [Drosophila grimshawi] gi|193894573|gb|EDV93439.1| GH19310 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195108107|ref|XP_001998634.1| GI23526 [Drosophila mojavensis] gi|193915228|gb|EDW14095.1| GI23526 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195395448|ref|XP_002056348.1| GJ10278 [Drosophila virilis] gi|194143057|gb|EDW59460.1| GJ10278 [Drosophila virilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1282
FB|FBgn0037726 4719 CG9492 [Drosophila melanogaste 0.633 0.172 0.727 0.0
UNIPROTKB|F1NMK9 4582 DNAH5 "Uncharacterized protein 0.695 0.194 0.501 0.0
UNIPROTKB|F1NML0 4585 DNAH5 "Uncharacterized protein 0.697 0.194 0.502 0.0
UNIPROTKB|E1BMG2 4624 DNAH5 "Uncharacterized protein 0.631 0.174 0.539 0.0
UNIPROTKB|Q8TE73 4624 DNAH5 "Dynein heavy chain 5, a 0.631 0.174 0.540 0.0
UNIPROTKB|F1P6C6 4623 DNAH5 "Uncharacterized protein 0.631 0.174 0.536 0.0
UNIPROTKB|J9P6H1 3391 DNAH5 "Uncharacterized protein 0.631 0.238 0.536 0.0
UNIPROTKB|F1P6D8 4624 DNAH5 "Uncharacterized protein 0.631 0.174 0.536 0.0
UNIPROTKB|F1LNS7 3870 Dnah5 "Protein Dnah5" [Rattus 0.631 0.209 0.531 0.0
MGI|MGI:107718 4621 Dnahc5 "dynein, axonemal, heav 0.631 0.175 0.533 0.0
FB|FBgn0037726 CG9492 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 3132 (1107.6 bits), Expect = 0., Sum P(3) = 0.
 Identities = 598/822 (72%), Positives = 688/822 (83%)

Query:    99 GGEAQRKK--------KPSFPLQPRNFYSHVMENKEVVKTLSLLSTCTLDIKPALVSFVE 150
             GG+++R+K        +P  P   ++FYS +M+NKEV K ++ L++CT ++KP + ++++
Sbjct:  1128 GGKSRRRKIYCLASEERPQMPHMLKSFYSAIMDNKEVAKAVNQLASCTKNVKPEIQTYIK 1187

Query:   151 KWSPYKFLWENEMINRRDVTNVGLVESEHALRRHGELEAELNIEPDLHTFGSCIVISVEQ 210
             +W PY FLW+N+   R+ +   GL E E  LR   +L+A L +EPD+  FG C+ +  E+
Sbjct:  1188 RWKPYHFLWKNDRTTRQ-LMEFGLQEFETTLRCLSDLDANLLVEPDMEVFGQCVAVYNEK 1246

Query:   211 LKFGLMTEINSCNRRIAFLLRKKYHREMDYVYAVMNEMDRKLDRTITDLDDVRMIMELLK 270
             LK+GL  EI SCN +I   ++KKY +EMDYVYAV+NEMDRKLDR I DLDDVRMIME L 
Sbjct:  1247 LKYGLAIEIKSCNHKIGQAMKKKYKKEMDYVYAVINEMDRKLDRPIRDLDDVRMIMETLG 1306

Query:   271 RIRDQEVDMELKIEPIEEAYNVITRYDLPVDKEDLEQVDSLRYTWQKLLARAMTANVLLT 330
             +IR+QEVDMEL+I+PIEEA+NV+TRY++ V++E  + VD+LR T+Q LLA A+ A V L 
Sbjct:  1307 KIREQEVDMELRIDPIEEAFNVLTRYEVQVEREQFDLVDNLRATFQNLLAGALQAQVKLL 1366

Query:   331 TMQPRFEQDLADNLAQFRQDKVDYCHEYRTSGPMMPGLSPREASDRLILFQNRFDGMWRK 390
              MQP F+ DL  NL  F+QDK+ Y  EYRT+GPM  GL+PREASDRLILFQNRF+GMWR+
Sbjct:  1367 DMQPAFQDDLRTNLDNFKQDKISYVTEYRTAGPMQAGLTPREASDRLILFQNRFEGMWRR 1426

Query:   391 LQTYQSGEELFGLPTTDYPELAQIRKEXXXXXXXXXXXXDVIDRVSSYYDIPWGEVNIEE 450
             LQTYQSGEELFGLP TDYPEL QIRKE            DVIDRVSSYYDIPW EV+IEE
Sbjct:  1427 LQTYQSGEELFGLPQTDYPELGQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWNEVDIEE 1486

Query:   451 INNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIME 510
             INNELMEFQNRCRKLPKGLKEWPAFHALK+TIDDFNDMCPLLELMANKAMKPRHWQRIM+
Sbjct:  1487 INNELMEFQNRCRKLPKGLKEWPAFHALKKTIDDFNDMCPLLELMANKAMKPRHWQRIMD 1546

Query:   511 VTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIEAKLRQVTNEWSVHELT 570
             VT+Y FE DSE F LKNILEAPLLK KEDIEDICISAMKEKDIEAKL+QVTNEWSVHEL 
Sbjct:  1547 VTRYIFEFDSEGFSLKNILEAPLLKHKEDIEDICISAMKEKDIEAKLKQVTNEWSVHELQ 1606

Query:   571 FMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEI 630
             FM+FNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWV+DLSN+NEI
Sbjct:  1607 FMSFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVYDLSNSNEI 1666

Query:   631 LERWLLVQNMWVYLEAVFVGGDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVG 690
             LERWLLVQNMWVYLEAVFVGGDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVV+CCVG
Sbjct:  1667 LERWLLVQNMWVYLEAVFVGGDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVACCVG 1726

Query:   691 DDMXXXXXXXXXXXXXXCQKSLSGYLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQNH 750
             DD+              CQKSLSGYLE+KRMMFPRFFFVSDPALLEILGQASDSHTIQNH
Sbjct:  1727 DDLLKQLLPHLQEQLEICQKSLSGYLERKRMMFPRFFFVSDPALLEILGQASDSHTIQNH 1786

Query:   751 LLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVRAEGSVESWLTCLLQMAQQSLH 810
             LL+IFDNTK+V+FH+ EYNKM  I+SSEGE IQL+RA+RAEGSVE+WLT LL  AQ SLH
Sbjct:  1787 LLNIFDNTKSVKFHDVEYNKMMAIISSEGEMIQLDRAIRAEGSVETWLTQLLVTAQASLH 1846

Query:   811 SIIRTAYTSLNDPNFLLLQFLDKMPAQIGILGIQMIWTRDAESALSQARHDKKMMSETNN 870
             SIIRTAY ++NDPNF LL FL+K PAQIG+LGIQM+WTRDAE AL + R ++K+M ETNN
Sbjct:  1847 SIIRTAYATINDPNFTLLSFLEKAPAQIGLLGIQMVWTRDAEMALMRGR-ERKVMMETNN 1905

Query:   871 RFLELLNTLIDQTTRDLTKIERIKFETLITIHVHQRDIFDIL 912
             +FLE+LNTLIDQTTR+LTK ER  FETLITIHVHQRDIFDIL
Sbjct:  1906 KFLEMLNTLIDQTTRNLTKRERTNFETLITIHVHQRDIFDIL 1947
GO:0003774 "motor activity" evidence=ISS
GO:0005875 "microtubule associated complex" evidence=ISS;IDA
GO:0005858 "axonemal dynein complex" evidence=ISS
GO:0030286 "dynein complex" evidence=ISS
GO:0007018 "microtubule-based movement" evidence=IEA;ISS
GO:0042623 "ATPase activity, coupled" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0003777 "microtubule motor activity" evidence=IEA
GO:0016887 "ATPase activity" evidence=IEA
GO:0007605 "sensory perception of sound" evidence=IMP
UNIPROTKB|F1NMK9 DNAH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NML0 DNAH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BMG2 DNAH5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TE73 DNAH5 "Dynein heavy chain 5, axonemal" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P6C6 DNAH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P6H1 DNAH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P6D8 DNAH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1LNS7 Dnah5 "Protein Dnah5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:107718 Dnahc5 "dynein, axonemal, heavy chain 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8TE73DYH5_HUMANNo assigned EC number0.53120.69110.1916yesN/A
Q8VHE6DYH5_MOUSENo assigned EC number0.52130.69110.1917yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1282
pfam08393408 pfam08393, DHC_N2, Dynein heavy chain, N-terminal 1e-152
COG5245 3164 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton] 5e-05
pfam07728135 pfam07728, AAA_5, AAA domain (dynein-related subfa 7e-04
COG5245 3164 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton] 0.001
>gnl|CDD|219818 pfam08393, DHC_N2, Dynein heavy chain, N-terminal region 2 Back     alignment and domain information 
 Score =  463 bits (1193), Expect = e-152
 Identities = 158/413 (38%), Positives = 251/413 (60%), Gaps = 5/413 (1%)

Query: 409 PELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKG 468
            EL ++ KEL  L+KL+ LY++  + +  + + PW  ++ EE+ +E+ +F  + RKLPK 
Sbjct: 1   EELQELEKELKPLKKLWDLYSEWSESIEEWKNTPWSTIDPEELESEIEKFLKQLRKLPKN 60

Query: 469 LKEWPAFHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIMEVTKYNFELDSESFCLKNI 528
           L+++     LK+ IDDF    PL+E + N A+K RHW++I ++  +  +   E F L ++
Sbjct: 61  LRQYEVAEELKKKIDDFKKSLPLIEDLKNPALKERHWEQIFKLLGFK-DFPDEDFTLGDL 119

Query: 529 LEAPLLKCKEDIEDICISAMKEKDIEAKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTA 588
           L+  LL  +E+IE+I   A KE  IE  L+++ + W   E   + + + G  LL+G    
Sbjct: 120 LDLGLLNYEEEIEEISEQAQKEYSIEKALKKIKDTWEELEFELVPYKDTGTYLLKG--WD 177

Query: 589 ETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVF 648
           E I  L+D+L+ L S+ ++ Y  PF ++  +W   L+   E+LE WL VQ  WVYLE +F
Sbjct: 178 EIIELLDDNLVTLQSMKASPYVKPFEEEADEWEKKLNLIQEVLELWLKVQRKWVYLEPIF 237

Query: 649 VGGDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQEQLELC 708
              DI KQLP+E+KRFS +DK W+K+M++A++ P V+  C    +L+  L  L EQLE  
Sbjct: 238 SSSDIKKQLPEESKRFSNVDKEWKKLMKKANKDPNVLEVCNIPGLLE-KLEKLNEQLEKI 296

Query: 709 QKSLSGYLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEY 768
           QKSL+ YLE KR  FPRF+F+S+  LLEIL Q+ D   +Q HL  +F+   ++ F E+  
Sbjct: 297 QKSLNEYLESKRSAFPRFYFLSNDDLLEILSQSKDPTAVQPHLKKLFEGISSLEFDEEN- 355

Query: 769 NKMTHIVSSEGETIQLERAVRAEGSVESWLTCLLQMAQQSLHSIIRTAYTSLN 821
           N +T ++SSEGE + L + V  EG+VE WL  L +  +++L  +++ A    +
Sbjct: 356 NNITGMISSEGEEVPLSKPVSVEGNVEDWLNELEKEMKETLKKLLKEALQDYD 408

Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. This region is found C-terminal to the dynein heavy chain N-terminal region 1 (pfam08385) in many members of this family. No functions seem to have been attributed specifically to this region. Length = 408
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily) Back     alignment and domain information
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1282
PF08393408 DHC_N2: Dynein heavy chain, N-terminal region 2; I 100.0
COG5245 3164 DYN1 Dynein, heavy chain [Cytoskeleton] 100.0
KOG3595|consensus 1395 98.97
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 98.63
COG5245 3164 DYN1 Dynein, heavy chain [Cytoskeleton] 98.38
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 97.72
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 97.62
PHA02244383 ATPase-like protein 97.53
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 97.32
KOG1808|consensus 1856 96.48
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 95.88
cd00176213 SPEC Spectrin repeats, found in several proteins i 94.83
PRK11331459 5-methylcytosine-specific restriction enzyme subun 93.32
PF00435105 Spectrin: Spectrin repeat; InterPro: IPR002017 Spe 92.11
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 91.8
PRK07940394 DNA polymerase III subunit delta'; Validated 90.96
PRK14958 509 DNA polymerase III subunits gamma and tau; Provisi 90.9
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 90.47
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 89.12
PF122521439 SidE: Dot/Icm substrate protein; InterPro: IPR0210 88.97
PLN03025319 replication factor C subunit; Provisional 88.18
PF12774231 AAA_6: Hydrolytic ATP binding site of dynein motor 87.28
TIGR00041195 DTMP_kinase thymidylate kinase. Function: phosphor 86.84
PLN02842 505 nucleotide kinase 86.55
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 86.18
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 85.98
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 85.88
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 85.72
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 85.28
smart00150101 SPEC Spectrin repeats. 84.78
PF00004132 AAA: ATPase family associated with various cellula 83.84
PRK14963 504 DNA polymerase III subunits gamma and tau; Provisi 83.35
PRK05563 559 DNA polymerase III subunits gamma and tau; Validat 83.31
PRK14951 618 DNA polymerase III subunits gamma and tau; Provisi 82.69
PRK00440319 rfc replication factor C small subunit; Reviewed 82.6
PHA02544316 44 clamp loader, small subunit; Provisional 82.15
PRK08699325 DNA polymerase III subunit delta'; Validated 81.95
KOG3091|consensus508 81.77
cd02037169 MRP-like MRP (Multiple Resistance and pH adaptatio 80.63
PRK12402337 replication factor C small subunit 2; Reviewed 80.48
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules Back     alignment and domain information 
Probab=100.00  E-value=1.7e-81  Score=752.47  Aligned_cols=405  Identities=41%  Similarity=0.760  Sum_probs=323.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHcCCccCCCchHHHHHHHHHHHHHhhc
Q psy9553         410 ELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMC  489 (1282)
Q Consensus       410 ~L~~l~~el~~~~~lW~~~~~~~~~~~~w~~~~~~~ld~~~i~~~~~~~~~~~~~l~k~l~~~~~~~~l~~~i~~f~~~l  489 (1282)
                      +|+++.+++++++.+|..+.+|....+.|+++||.++|++.+++.+..+.+.+.++++.+++++++.++++.|++|+.++
T Consensus         2 ~L~~l~~~l~~~~~lW~~~~~~~~~~~~w~~~~~~~ld~~~l~~~v~~~~~~l~~l~~~~~~~~v~~~l~~~i~~f~~~l   81 (408)
T PF08393_consen    2 ELEELEKELEPLKKLWSLISEWQEQLEEWMNTPFSDLDVEELEEEVEEFLKQLRKLPKSLREWPVYKELKKKIEEFKKYL   81 (408)
T ss_dssp             -------------------------HHHHHH--TTT-----------------------------HHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcCHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHHhc
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCchhhHHHHHHHhc-CCcccCCccccHHHHHcCCccccHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccE
Q psy9553         490 PLLELMANKAMKPRHWQRIMEVTK-YNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIEAKLRQVTNEWSVHE  568 (1282)
Q Consensus       490 Pli~~L~~~~lk~RHW~~i~~~~g-~~~~~~~~~~tL~~Ll~~~l~~~~~~I~~I~~~A~~E~~ie~~L~~i~~~W~~~~  568 (1282)
                      |+|..|+||+|++|||++|++++| .++ ++ .++||++|+++|+.+|.+.|.+|+..|++|+.||++|++|++.|++++
T Consensus        82 pli~~L~~~~mk~rHW~~l~~~~g~~~~-~~-~~~tL~~Ll~~~l~~~~~~I~~I~~~A~~E~~ie~~L~~i~~~W~~~~  159 (408)
T PF08393_consen   82 PLIQDLRNPAMKPRHWKQLFQILGIQDF-PN-ESLTLQDLLDLGLLDHEDKIEEISEQAQKEYKIEQSLEKIKEEWKNME  159 (408)
T ss_dssp             HHHHHTTSTT--CHHHHHHHHCTT------T-TS-SHHHHHHS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-B
T ss_pred             HHHHHhcCccchHHHHHHHHHHhccccc-cc-ccccHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhce
Confidence            999999999999999999999999 777 44 679999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCCeEEEcCCChHHHHHHHHhhHHHHhhhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcc
Q psy9553         569 LTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVF  648 (1282)
Q Consensus       569 f~~~~~k~~~~~~l~~~~~~ei~~~l~d~~~~l~~m~~s~~~~~f~~~v~~we~~L~~~~~~l~~w~~vQ~~W~yLe~IF  648 (1282)
                      |++.+|++++.++|++  +++|++.|+||++.|++|++|||+++|+++|.+|+++|..++++|+.|..||++|+||+|||
T Consensus       160 f~~~~~~~~~~~il~~--~~~i~~~led~~~~L~~m~~S~~~~~~~~~v~~w~~~L~~~~~il~~w~~~Q~~W~yL~~if  237 (408)
T PF08393_consen  160 FEFVPYKDKDVFILKN--WDEIIQQLEDHLLTLQSMKSSPFVKPFRDEVEEWEKKLNNIQEILEEWMEVQRKWMYLEPIF  237 (408)
T ss_dssp             -EEEEETTT-CEEEE---CHHHHHHHHHHHHHHHHTCSSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eeeeccccchhheecc--hHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999988898874  79999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeecCCchHHHHHHHHHHHHHHHHHHHhHHHHhhhccCCeeEe
Q psy9553         649 VGGDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQEQLELCQKSLSGYLEKKRMMFPRFFF  728 (1282)
Q Consensus       649 ~~~dI~~qLp~e~~~F~~vd~~~~~im~~~~~~~~v~~~~~~~~~l~~~l~~~~~~Le~iqk~L~~yLe~KR~~FPRFyF  728 (1282)
                      +++||++|||.|+++|..|++.|+.+|+++.++|+|+.+|..++ +.+.|..+++.|+.|+|+|++|||+||..||||||
T Consensus       238 ~~~di~~~lp~e~~~F~~i~~~~~~i~~~~~~~~~v~~~~~~~~-~~~~l~~~~~~l~~i~k~L~~~Le~kR~~FPRfyF  316 (408)
T PF08393_consen  238 SSSDIKKQLPKEAKKFSSIDKEWRSIMKRAQKDPNVLSVCSNPD-LLEKLESINESLEKIQKSLNDYLESKREAFPRFYF  316 (408)
T ss_dssp             TSCCHCCCTHHHHHHHHHHHHHHHHHHHHHHCT-CCHHHCCSTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred             cchhHHHHHHHHHHHHHHcChHHHHHHHHHHhCcchhHHhhHhh-HHHHHHHHHHHHHHHHHHHhHHHHHHHhhccceee
Confidence            99999999999999999999999999999999999999998765 66789999999999999999999999999999999


Q ss_pred             cChHHHHHHhccCCChHHHHHHHHHHhccccceEecccccceEEEEecCCCCeEecccccccccCHHHHHHHHHHHHHHH
Q psy9553         729 VSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVRAEGSVESWLTCLLQMAQQS  808 (1282)
Q Consensus       729 LSd~eLLeiLs~~~~p~~vq~hl~k~F~~I~~l~f~~~~~~~I~~m~S~egE~v~~~~~v~~~g~ve~WL~~le~~m~~t  808 (1282)
                      |||+|||+|||+++||..+|+||+|||+||++|.|++++ ..|+||+|++||+|+|.+||.++|+||.||.+||.+|+.|
T Consensus       317 lsd~eLl~ils~~~~~~~i~~~l~k~F~~i~~l~~~~~~-~~i~~~~s~~gE~~~l~~~v~~~~~ve~WL~~le~~m~~t  395 (408)
T PF08393_consen  317 LSDDELLEILSQSKDPEQIQPHLKKCFPGIKSLEFDENN-NSITGMISAEGETLPLDKPVSIEGPVEEWLNELEEEMKST  395 (408)
T ss_dssp             C-HHHHHHHHHTTTTCHHHHHHHHHCCSSEEEEEE-TTS-SEEEEEEETTS-EEEEEEEEESSS-HHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhccch-hhhhhhcCCCCCeEEeCCcccCCCcHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999997643 3599999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy9553         809 LHSIIRTAYTSL  820 (1282)
Q Consensus       809 l~~~i~~~~~~~  820 (1282)
                      |+..++.|+.+|
T Consensus       396 l~~~~~~~~~~y  407 (408)
T PF08393_consen  396 LKKQIRKCLEDY  407 (408)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999988

Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG3595|consensus Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>KOG1808|consensus Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A Back     alignment and domain information
>TIGR00041 DTMP_kinase thymidylate kinase Back     alignment and domain information
>PLN02842 nucleotide kinase Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>smart00150 SPEC Spectrin repeats Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG3091|consensus Back     alignment and domain information
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1282
3vkh_A 3367 X-Ray Structure Of A Functional Full-Length Dynein 3e-40
3vkh_A 3367 X-Ray Structure Of A Functional Full-Length Dynein 6e-27
3vkg_A 3245 X-Ray Structure Of An Mtbd Truncation Mutant Of Dyn 3e-40
3vkg_A 3245 X-Ray Structure Of An Mtbd Truncation Mutant Of Dyn 6e-27
3qmz_A 2486 Crystal Structure Of The Cytoplasmic Dynein Heavy C 7e-18
4ai6_A 2695 Dynein Motor Domain - Adp Complex Length = 2695 8e-18
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor Domain Length = 3367 Back     alignment and structure 
Iteration: 1

 Score =  164 bits (415), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 121/504 (24%), Positives = 234/504 (46%), Gaps = 25/504 (4%)
Query: 435 VSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMCPLLEL 494
           + S  +  W  +   ++   L +   + + LP  ++++ AF   +  I  +     ++  
Sbjct: 48  IDSLKETAWSAIIPRKVRKSLEDTLQKLKNLPNRIRQYSAFDHAQNLIKIYLKGNAIITD 107
Query: 495 MANKAMKPRHWQRIMEVTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIE 554
           + ++A+K RHW+ + +    N+ +      L +I ++ L + +    ++  +A  E  +E
Sbjct: 108 LHSEAIKDRHWKILKKRLNTNWII--TELTLGSIWDSDLARNENIYREVITAAQGEIALE 165
Query: 555 AKLRQVTNEWSVHELTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFR 614
             L+ V   W+  EL  + +  + +L+   D   +   +L + L  + ++  + Y   F 
Sbjct: 166 EFLKGVREFWTTLELDLVNYQRKCKLVRGWD---DLFNKLAEHLNSISAMKMSPYYKVFE 222
Query: 615 KQIQQWVFDLSNTNEILERWLLVQNMWVYLEAVFVG-GDIAKQLPKEAKRFSKIDKSWQK 673
           ++   W   L+    +L+ W+ VQ  WVYLE +F G GDI + LP E+ RF  I+  +  
Sbjct: 223 EEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKSINSEFIA 282
Query: 674 IMQRAHETPGVVSCCVGDDMXXXXXXXXXXXXXXCQKSLSGYLEKKRMMFPRFFFVSDPA 733
           I+++    P ++   +  +                QK+L  YLE++R  F RF+FV D  
Sbjct: 283 ILKKVSGAPLILEV-LAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDED 341
Query: 734 LLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVR-AEG 792
           LLEI+G + D   IQ H   +F     +   + E   +  + S+EGET+  ++ +  A G
Sbjct: 342 LLEIIGNSKDIIKIQKHFRKMFAGLANLTL-DDEKTTIIGMSSAEGETVTFKKPISIANG 400
Query: 793 -SVESWLTCLLQMAQQSLHSIIRTAYTSLN----DPNFLLLQFLDKMPAQIGILGIQMIW 847
             +  WLT +    + +L +++  +    N    + +    +++D  P Q+ +L  Q++W
Sbjct: 401 PKIHEWLTMVESEMKSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVW 460
Query: 848 TRDAESALS----QARHDKKMMSETNNRFLELLNTLIDQTTRDLTKIERIKFETLITIHV 903
           +   + AL     Q    ++ +         +LN L D   +DL+  +R KFE LIT  V
Sbjct: 461 STQVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNLADSVLQDLSAQKRKKFEHLITELV 520
Query: 904 HQRDIF-------DILGPEEVQWL 920
           HQRD+        ++ G ++  WL
Sbjct: 521 HQRDVVRQLQKCKNLTGNKDFDWL 544
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor Domain Length = 3367 Back     alignment and structure
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor Domain Length = 3245 Back     alignment and structure
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor Domain Length = 3245 Back     alignment and structure
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain Motor Domain Length = 2486 Back     alignment and structure
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex Length = 2695 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1282
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 0.0
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 7e-74
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 1e-139
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 6e-96
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-24
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
 Score =  614 bits (1584), Expect = 0.0
 Identities = 123/549 (22%), Positives = 247/549 (44%), Gaps = 25/549 (4%)

Query: 390 KLQTYQSGEELFGLPTTDYPELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIE 449
           +   +  G   +            + +E+  L+ ++   ++    + S  +  W  +   
Sbjct: 3   RHHHHHHGGGDYKDDDDKGGGKVPVEEEIQDLKAVWVELSNTWQEIDSLKETAWSAIIPR 62

Query: 450 EINNELMEFQNRCRKLPKGLKEWPAFHALKRTIDDFNDMCPLLELMANKAMKPRHWQRIM 509
           ++   L +   + + LP  ++++ AF   +  I  +     ++  + ++A+K RHW+ + 
Sbjct: 63  KVRKSLEDTLQKLKNLPNRIRQYSAFDHAQNLIKIYLKGNAIITDLHSEAIKDRHWKILK 122

Query: 510 EVTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIEAKLRQVTNEWSVHEL 569
           +    N+        L +I ++ L + +    ++  +A  E  +E  L+ V   W+  EL
Sbjct: 123 KRLNTNW--IITELTLGSIWDSDLARNENIYREVITAAQGEIALEEFLKGVREFWTTLEL 180

Query: 570 TFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNE 629
             + +  + +L+   D   +   +L + L  + ++  + Y   F ++   W   L+    
Sbjct: 181 DLVNYQRKCKLVRGWD---DLFNKLAEHLNSISAMKMSPYYKVFEEEANHWDDRLNKVRS 237

Query: 630 ILERWLLVQNMWVYLEAVFVG-GDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCC 688
           +L+ W+ VQ  WVYLE +F G GDI + LP E+ RF  I+  +  I+++    P ++   
Sbjct: 238 LLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKSINSEFIAILKKVSGAPLILEVL 297

Query: 689 VGDDMLKLLLPHLQEQLELCQKSLSGYLEKKRMMFPRFFFVSDPALLEILGQASDSHTIQ 748
             + + +  +  L + L   QK+L  YLE++R  F RF+FV D  LLEI+G + D   IQ
Sbjct: 298 AIERIQQ-TMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDLLEIIGNSKDIIKIQ 356

Query: 749 NHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVRAEG--SVESWLTCLLQMAQ 806
            H   +F     +   + E   +  + S+EGET+  ++ +       +  WLT +    +
Sbjct: 357 KHFRKMFAGLANLTLDD-EKTTIIGMSSAEGETVTFKKPISIANGPKIHEWLTMVESEMK 415

Query: 807 QSLHSIIRTAYTSLNDPNFL----LLQFLDKMPAQIGILGIQMIWTRDAESALSQARHD- 861
            +L +++  +    N  +        +++D  P Q+ +L  Q++W+   + AL       
Sbjct: 416 STLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQ 475

Query: 862 ---KKMMSETNNRFLELLNTLIDQTTRDLTKIERIKFETLITIHVHQRDIFD-------I 911
              ++ +         +LN L D   +DL+  +R KFE LIT  VHQRD+         +
Sbjct: 476 SKIQEQLQSIEQTTQMILNNLADSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQKCKNL 535

Query: 912 LGPEEVQWL 920
            G ++  WL
Sbjct: 536 TGNKDFDWL 544
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695 Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1282
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 100.0
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 100.0
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 95.87
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 94.22
1cun_A213 Protein (alpha spectrin); two repeats of spectrin, 93.48
3fb2_A218 Spectrin alpha chain, brain spectrin; non-erythroi 93.32
1s35_A214 Beta-I spectrin, spectrin beta chain, erythrocyte; 93.27
1u5p_A216 Spectrin alpha chain, brain; alpha spectrin, two r 92.83
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 92.66
1u4q_A322 Spectrin alpha chain, brain; alpha spectrin, three 92.47
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 91.16
3edu_A218 Beta-I spectrin, spectrin beta chain, erythrocyte; 91.04
1quu_A250 Human skeletal muscle alpha-actinin 2; triple-heli 90.44
2chg_A226 Replication factor C small subunit; DNA-binding pr 90.21
1wlx_A129 Alpha-actinin 4; three-helix bundle, protein bindi 90.05
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 89.08
1sjj_A863 Actinin; 3-helix bundle, calponin homology domain, 88.74
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 88.47
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 88.44
3edv_A323 Spectrin beta chain, brain 1; spectrin repeat, coi 88.16
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 88.16
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 88.03
3hjn_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 87.54
1hci_A476 Alpha-actinin 2; triple-helix coiled coil, contrac 87.48
2chq_A319 Replication factor C small subunit; DNA-binding pr 87.04
3lbx_B185 Beta-I spectrin, spectrin beta chain, erythrocyte; 87.02
3kbt_A326 Beta-I spectrin, spectrin beta chain, erythrocyte; 86.72
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 86.25
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 86.23
2r44_A331 Uncharacterized protein; putative ATPase, structur 85.01
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 84.65
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 84.54
3uul_A118 Utrophin; spectrin repeat, structural protein, cyt 84.31
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 84.04
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 83.92
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 83.79
3lv8_A236 DTMP kinase, thymidylate kinase; structural genomi 82.7
2odv_A235 Plectin 1, HD1; plakin domain, spectrin repeat, cy 81.73
4tmk_A213 Protein (thymidylate kinase); ATP:DTMP phosphotran 81.17
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 80.76
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 80.75
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 80.33
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
Probab=100.00  E-value=2.4e-173  Score=1773.52  Aligned_cols=843  Identities=25%  Similarity=0.475  Sum_probs=707.6

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHcCCccCCCchHHHHHHHHHH
Q psy9553         404 PTTDYPELAQIRKELNLLQKLYKLYNDVIDRVSSYYDIPWGEVNIEEINNELMEFQNRCRKLPKGLKEWPAFHALKRTID  483 (1282)
Q Consensus       404 ~~t~~~~L~~l~~el~~~~~lW~~~~~~~~~~~~w~~~~~~~ld~~~i~~~~~~~~~~~~~l~k~l~~~~~~~~l~~~i~  483 (1282)
                      |...|..|..+.+|+..++.+|+++..|+..+++|++++|.++|++.++++++.|.++++++++.+++|+++.++++.|+
T Consensus        17 ~~~~~~~l~~~~~el~~l~~~w~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~i~   96 (3245)
T 3vkg_A           17 DDDKGGGKVPVEEEIQDLKAVWVELSNTWQEIDSLKETAWSAIIPRKVRKSLEDTLQKLKNLPNRIRQYSAFDHAQNLIK   96 (3245)
T ss_dssp             ------------------------------CHHHHHHCCTTTCCC-------------------------CHHHHHHHHH
T ss_pred             chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHH
Confidence            44568889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcHHHHHhcCCCCchhhHHHHHHHhcCCcccCCccccHHHHHcCCccccHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q psy9553         484 DFNDMCPLLELMANKAMKPRHWQRIMEVTKYNFELDSESFCLKNILEAPLLKCKEDIEDICISAMKEKDIEAKLRQVTNE  563 (1282)
Q Consensus       484 ~f~~~lPli~~L~~~~lk~RHW~~i~~~~g~~~~~~~~~~tL~~Ll~~~l~~~~~~I~~I~~~A~~E~~ie~~L~~i~~~  563 (1282)
                      +|+.++|+|..|+||+||+|||++|++++|.++.+  +++||++|+++++.+|.+.|++|+..|++|+.||+.|++|++.
T Consensus        97 ~f~~~lpll~~L~n~~~~~RHW~~l~~~~g~~~~~--~~~tL~~ll~~~l~~~~~~i~~I~~~A~~E~~iE~~L~~i~~~  174 (3245)
T 3vkg_A           97 IYLKGNAIITDLHSEAIKDRHWKILKKRLNTNWII--TELTLGSIWDSDLARNENIYREVITAAQGEIALEEFLKGVREF  174 (3245)
T ss_dssp             HHHHHTHHHHHTTSTTCCHHHHHHHHHHTTCCCCT--TSCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhCCccccHHHHHHHHHHhCCCCCc--cCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999997665  4799999999999999999999999999999999999999999


Q ss_pred             hcccEEEEEEecCCCeEEEcCCChHHHHHHHHhhHHHHhhhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy9553         564 WSVHELTFMTFNNRGELLLRGDTTAETIGQLEDSLMVLGSLLSNRYNAPFRKQIQQWVFDLSNTNEILERWLLVQNMWVY  643 (1282)
Q Consensus       564 W~~~~f~~~~~k~~~~~~l~~~~~~ei~~~l~d~~~~l~~m~~s~~~~~f~~~v~~we~~L~~~~~~l~~w~~vQ~~W~y  643 (1282)
                      |+.++|++.+|+++ ..+|++  +|||+++||||++.||+|++|||++||+++|.+|+++|+.++++|+.|+.|||+|+|
T Consensus       175 W~~~~f~~~~~~~~-~~ll~~--~dei~~~led~~~~l~sm~~S~~~~~f~~~v~~We~~L~~~~~il~~W~~vQ~~W~y  251 (3245)
T 3vkg_A          175 WTTLELDLVNYQRK-CKLVRG--WDDLFNKLAEHLNSISAMKMSPYYKVFEEEANHWDDRLNKVRSLLDVWIDVQRRWVY  251 (3245)
T ss_dssp             HHHCBCEEEEETTT-EEEEEC--HHHHHHHHHHHHHHHHHTTSSTTTTGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhceEEEEEeccCC-eeEeCC--HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999975 566774  799999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccc-hhhhhhcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeecCCchHHHHHHHHHHHHHHHHHHHhHHHHhhhcc
Q psy9553         644 LEAVFVG-GDIAKQLPKEAKRFSKIDKSWQKIMQRAHETPGVVSCCVGDDMLKLLLPHLQEQLELCQKSLSGYLEKKRMM  722 (1282)
Q Consensus       644 Le~IF~~-~dI~~qLp~e~~~F~~vd~~~~~im~~~~~~~~v~~~~~~~~~l~~~l~~~~~~Le~iqk~L~~yLe~KR~~  722 (1282)
                      |||||++ +||++|||.|+++|..||+.|+++|+++.++|+|+++|..++ +.+.|+++++.|+.|||+|++|||+||..
T Consensus       252 Le~IF~~s~DI~~qLP~E~~rF~~vd~~~~~im~~~~~~~~v~~~~~~~~-~~~~L~~~~~~Le~iqk~L~~yLE~KR~~  330 (3245)
T 3vkg_A          252 LEGIFSGSGDINQLLPAESTRFKSINSEFIAILKKVSGAPLILEVLAIER-IQQTMERLSDLLGKVQKALGEYLERQRSA  330 (3245)
T ss_dssp             HHHHC-----CTTTSHHHHHHHHHHHHHHHHHHHHHHHSCBHHHHTTSTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCcHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceEeecCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999984 699999999999999999999999999999999999998665 56679999999999999999999999999


Q ss_pred             CCeeEecChHHHHHHhccCCChHHHHHHHHHHhccccceEecccccceEEEEecCCCCeEeccccccc--ccCHHHHHHH
Q psy9553         723 FPRFFFVSDPALLEILGQASDSHTIQNHLLSIFDNTKAVRFHEQEYNKMTHIVSSEGETIQLERAVRA--EGSVESWLTC  800 (1282)
Q Consensus       723 FPRFyFLSd~eLLeiLs~~~~p~~vq~hl~k~F~~I~~l~f~~~~~~~I~~m~S~egE~v~~~~~v~~--~g~ve~WL~~  800 (1282)
                      |||||||||+|||+|||+++||.+||+||+|||+||++|.|+++. ..|+||+|+|||+|+|.+||.+  .|+||.||.+
T Consensus       331 FPRFyFlSd~eLLeILs~~~dp~~vq~hl~K~F~~I~~l~f~~~~-~~i~~m~S~eGE~v~~~~~v~~~~~~~ve~WL~~  409 (3245)
T 3vkg_A          331 FARFYFVGDEDLLEIIGNSKDIIKIQKHFRKMFAGLANLTLDDEK-TTIIGMSSAEGETVTFKKPISIANGPKIHEWLTM  409 (3245)
T ss_dssp             SGGGGGSCHHHHHHHHHGGGCGGGTGGGGGGTCSSCCEEEECTTS-CEEEEEECTTSCEEEEEEEEESSSSCCHHHHHHH
T ss_pred             CchhhccCcHHHHHHHHcCCChHHHHHHHHHHHhhhheEEecCCC-CEEEEEEcCCCCEEEeCCccccCCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999998653 4688999999999999999965  5899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCC----ccchHHHHhcCCchhHHHHHHHhhHHHHHHHHHhch----hhHHHHHHHHHHH
Q psy9553         801 LLQMAQQSLHSIIRTAYTSLNDP----NFLLLQFLDKMPAQIGILGIQMIWTRDAESALSQAR----HDKKMMSETNNRF  872 (1282)
Q Consensus       801 le~~m~~tl~~~i~~~~~~~~~~----~~~~~~wi~~~p~Qvvl~~~qi~wT~~ve~al~~~~----~~~~~~~~~~~~~  872 (1282)
                      ||.+|+.||+..++.|+.+|...    ..+|.+|+.+||+||+++++||+||++||+||.+.+    +.+.+++.+.+++
T Consensus       410 le~~m~~tl~~~~~~~~~~~~~~~~~~~~~~~~w~~~~p~Qv~l~~~qi~wT~~ve~al~~~~~~~~~~~~~l~~~~~~~  489 (3245)
T 3vkg_A          410 VESEMKSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTT  489 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCCTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccCcccHHHHHHHCcHHHHHHHHHheeHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence            99999999999999999999631    246899999999999999999999999999998754    2466899999999


Q ss_pred             HHHHHHHHHHHccCCCHHHHHhHHhHHHHHHHHHHHHhhh----------------------------------------
Q psy9553         873 LELLNTLIDQTTRDLTKIERIKFETLITIHVHQRDIFDIL----------------------------------------  912 (1282)
Q Consensus       873 ~~~l~~l~~~~~~~l~~~~r~k~~~Li~i~vh~rDiv~~l----------------------------------------  912 (1282)
                      ..+|+.|+.+++++|++.+|.|+++|||++||+|||+++|                                        
T Consensus       490 ~~~l~~l~~~v~~~l~~~~R~kl~~Lit~~VH~RDvv~~L~~~~~v~~~~dF~W~~qlRyy~~~~~~~~~~~~~v~~~~~  569 (3245)
T 3vkg_A          490 QMILNNLADSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQKCKNLTGNKDFDWLYHMRYYYDATQENVLHKLVIHMANA  569 (3245)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCSTTCHHHHTSEEEEECSSSSSSGGGEEEEETTE
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHhhhheeeccccCCcCceEEEEEcCc
Confidence            9999999999999999999999999999999999999887                                        


Q ss_pred             -----------------------------------------CC-------------------------------------
Q psy9553         913 -----------------------------------------GP-------------------------------------  914 (1282)
Q Consensus       913 -----------------------------------------GP-------------------------------------  914 (1282)
                                                               ||                                     
T Consensus       570 ~f~YgyEYlG~~~rLViTPLTdrcy~tl~~Al~~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i  649 (3245)
T 3vkg_A          570 TFYYGFEYLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRI  649 (3245)
T ss_dssp             EEECCCCCCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHH
T ss_pred             eecCccccCCCCCCCcCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence                                                     33                                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy9553         915 --------------------------------------------------------------------------------  914 (1282)
Q Consensus       915 --------------------------------------------------------------------------------  914 (1282)
                                                                                                      
T Consensus       650 ~~G~~~~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk  729 (3245)
T 3vkg_A          650 FVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLK  729 (3245)
T ss_dssp             HHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHH
T ss_pred             HhhHhhcCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHH
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------------------------C------
Q psy9553         915 -------------------------------------------------------------------------E------  915 (1282)
Q Consensus       915 -------------------------------------------------------------------------e------  915 (1282)
                                                                                               .      
T Consensus       730 ~lFr~v~m~~Pd~~~i~ei~L~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~lkr~~~~~~~~  809 (3245)
T 3vkg_A          730 KLFRSMAMIKPDREMIAQVMLYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLP  809 (3245)
T ss_dssp             TTEEEEECCSCCHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHHHHSCCCC---
T ss_pred             hhcEEEEEeCCCHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHhhhhhccc
Confidence                                                                                     1      


Q ss_pred             ----------------C----C----------------------------------------------------------
Q psy9553         916 ----------------E----V----------------------------------------------------------  917 (1282)
Q Consensus       916 ----------------n----i----------------------------------------------------------  917 (1282)
                                      .    +                                                          
T Consensus       810 ~~~~~~~~~~~~~~~~~~E~~illralrd~nlpKl~~~D~plF~~li~DlFPgv~~~~~~~~~l~~ai~~~~~~~~L~~~  889 (3245)
T 3vkg_A          810 PITDAESKTKADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTK  889 (3245)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCGGGHHHHHHHHHHHSTTCCCCCCCCHHHHHHHHHHHHHTTCCCC
T ss_pred             ccccccccccccccccccHHHHHHHHHHHhccCCCchhhHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHcCCccC
Confidence                            0    0                                                          


Q ss_pred             ------------------------CCCCChhHHHHHHHHHHHhc-CCCceeeeeccCCCCcccccceecCCCCccccchH
Q psy9553         918 ------------------------QWLTRKTTCIHTLMAALSEV-EEPHREMRMNPKAITAAQMFGRLDVATNDWTDGIF  972 (1282)
Q Consensus       918 ------------------------~~~~GKt~~~~~L~~a~~~~-~~~~~~~~inpk~i~~~~LyG~~d~~t~eW~dG~~  972 (1282)
                                              |+||||||||++|++||+.+ |.+++.|+|||||||++||||++||+||||+||||
T Consensus       890 ~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKait~~eLyG~~d~~T~EW~DGvl  969 (3245)
T 3vkg_A          890 QEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLF  969 (3245)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTSCHHHHHEEECTTTCCEEECHH
T ss_pred             HHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCCchhhhceeecCCCCeeeccHH
Confidence                                    88999999999999999998 45678899999999999999999999999999999


Q ss_pred             HHHHHHHhccC---CCCceEEEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhccc
Q psy9553         973 SALWRKTLKLK---PGDHVWLVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNG 1049 (1282)
Q Consensus       973 ~~~~r~~~~~~---~~~~~WivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcg 1049 (1282)
                      |+++|+++++.   .++++||||||||||+|||||||||||||+|||||||||+|||+|+|||||+||++||||||||||
T Consensus       970 s~i~R~~~~~~~~~~~~~~WIvfDGpVDa~WIEnlNsVLDDNK~LtL~nGErI~l~~~~~liFEv~dL~~ASPATVSRcG 1049 (3245)
T 3vkg_A          970 TATLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLATISRCG 1049 (3245)
T ss_dssp             HHHHHHHHTTSSSGGGEEEEEEEESCCCHHHHTTTHHHHSSSCEECCTTSCCEECCTTEEEEEEESCCTTCCHHHHHTSE
T ss_pred             HHHHHHHHhcccCCCCCceEEEECCCCCHHHHHHHHHHhcCCCeeecCCCCeeecCCCCEEEEEeccccccChhhheeee
Confidence            99999998643   345899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCcHHHHHHHhccCChH-------------------------------------------------------
Q psy9553        1050 MVYMSSSGLDWSPIVAAWLRGRSAK------------------------------------------------------- 1074 (1282)
Q Consensus      1050 mvy~~~~~~~~~~~~~swl~~~~~~------------------------------------------------------- 1074 (1282)
                      ||||+|+++||+|++.+|+.+++..                                                       
T Consensus      1050 mVy~~~~~l~~~~~~~swl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (3245)
T 3vkg_A         1050 MVWFSEEILTTQMIFQNYLDTLSNEPFDPQEKEQQKRNENAQLQQQQQTTITSPILTSPPTTSSSSRSTTSTTSMIPAGL 1129 (3245)
T ss_dssp             EEECCTTSSCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHTC----------------------------------CCHHH
T ss_pred             EEEEcccccCchHHHHHHHHhCccccccchhhhhhcccccchhhhcccccccccccccccccccccccccccccccchhH
Confidence            9999999999999999999864210                                                       


Q ss_pred             -----HHHHHHHHH--HhhhHHHHHHHhhccccccccchHHHHHHHHHHHhhccCCCCCCccccccccCCCCCCCCCCcc
Q psy9553        1075 -----EASVFHHLF--EESFPVLYAWGAANLSYVMKVLQVNYVQQMLILLQGLVPTSTPTVTEAESTEEGGAPSPAPLEE 1147 (1282)
Q Consensus      1075 -----~~~~l~~l~--~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 1147 (1282)
                           ..+.+..+|  ++|++++++|+++ +.++++++..+++.++|++|++++....    ++.               
T Consensus      1130 ~~~~~~~~~l~~~~~~~~~v~~~l~~~~~-~~~i~~~~~~~~v~~l~~ll~~~~~~~~----~~~--------------- 1189 (3245)
T 3vkg_A         1130 KVQKECAAIISQYFEPGGLVHKVLEDAGQ-RPHIMDFTRLRVLNSFFSLMNRSIVNVI----EYN--------------- 1189 (3245)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHT-SCCSSCCCHHHHHHHHHHHHHHHHHHHH----HHH---------------
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHh-cCcccCccHHHHHHHHHHHHHHHhhhhc----ccc---------------
Confidence                 123466777  6888999999974 6889999999999999999999874210    000               


Q ss_pred             hhhhhhhhhhccCCchHHHHHHHHHHHHHHhccccCCcchhhHHHHHHHHhhcccCCCCCCCCCCCceEEEEEcC-CCCc
Q psy9553        1148 DEEAKSEQDLCTKLSPEHLHRLYVFALVWGMGAFLELPGRVKFDLFLREKLATLLDLPSNAGDPQATVFDFYVND-EGGW 1226 (1282)
Q Consensus      1148 ~~~~~~~~~~~~~~~~~~~~~~f~fa~iW~~gg~l~~~~r~~f~~~~~~~~~~~~~~p~~~~~~~~~v~dy~~~~-~~~w 1226 (1282)
                        ..+++.+...+....+++++|+||+||||||+++.++|.+||+|+|+...  ..+|+    ++++|||||++. +|+|
T Consensus      1190 --~~~~~~~~~~~~~~~~~~~~f~faliWs~Gg~l~~~~R~~F~~~~~~~~~--~~~p~----~~~~v~Dy~~~~~~~~w 1261 (3245)
T 3vkg_A         1190 --QLHSDFPMSPENQSNYITNRLLYSLMWGLGGSMGLVERENFSKFIQTIAI--TPVPA----NTIPLLDYSVSIDDANW 1261 (3245)
T ss_dssp             --HHTTTSCCCHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHTTCS--SCCCC----TTSCGGGEEECTTTCSE
T ss_pred             --cccccCCCCHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhcC--CCCCC----CCCceEEEEEECCCCee
Confidence              00000000011123578999999999999999999999999999998764  33332    268999999996 8999


Q ss_pred             cccccccCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcCCcEEEecCCCCC
Q psy9553        1227 EPWSSMVNTYSYPENSTPDYSSILVPIADNVRIDYLVNCIAKQEHAVLLIGESGKL 1282 (1282)
Q Consensus      1227 ~~W~~~~~~~~~~~~~~~~~~~~~vpt~dt~r~~~l~~~~~~~~~~~ll~G~~Gt~ 1282 (1282)
                      .+|.+.+|.+.++++. .++++++|||+||+|+.|+++.++.+++|||||||||||
T Consensus      1262 ~~W~~~v~~~~~~~~~-~~~~~ilVPT~DTvR~~~ll~~ll~~~~pvLL~GptGtG 1316 (3245)
T 3vkg_A         1262 SLWKNKVPSVEVETHK-VASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSG 1316 (3245)
T ss_dssp             EETTCCC---CCCSTT-TTCTTCCCCCHHHHHHHHHHHHHHHTTCCCEEESSTTSS
T ss_pred             eehhhcCCccccCCcc-CCcccceecchHHHHHHHHHHHHHHCCCcEEEECCCCCC
Confidence            9999999999887653 368999999999999999999999999999999999999
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A Back     alignment and structure
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens} Back     alignment and structure
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Back     alignment and structure
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A Back     alignment and structure
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima} Back     alignment and structure
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1 Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} Back     alignment and structure
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* Back     alignment and structure
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A Back     alignment and structure
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1282
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 97.78
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 93.36
d1u5pa1110 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 88.94
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 88.47
d1u5pa2101 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 87.71
d1s35a2105 Spectrin beta chain {Human (Homo sapiens) [TaxId: 87.67
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 87.35
d1hcia4114 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 86.99
d1quua1124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 85.98
d1cuna2104 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 85.96
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 85.41
d1s35a1106 Spectrin beta chain {Human (Homo sapiens) [TaxId: 82.06
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=1.2e-05  Score=82.96  Aligned_cols=138  Identities=12%  Similarity=0.044  Sum_probs=95.2

Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCce---eeeeccCCCCcccccceecCCCCccccchHHHHHHHHhcc-----CCCCceE
Q psy9553         918 QWLTRKTTCIHTLMAALSEVEEPHR---EMRMNPKAITAAQMFGRLDVATNDWTDGIFSALWRKTLKL-----KPGDHVW  989 (1282)
Q Consensus       918 ~~~~GKt~~~~~L~~a~~~~~~~~~---~~~inpk~i~~~~LyG~~d~~t~eW~dG~~~~~~r~~~~~-----~~~~~~W  989 (1282)
                      |.|+||||+++.+++++........   -...+++.+..+.-.+.+.....++...+--..+|++...     ..+.+++
T Consensus        32 p~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~ir~l~~~~~~~~~~~~~kv  111 (207)
T d1a5ta2          32 LPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKV  111 (207)
T ss_dssp             CTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEE
T ss_pred             CCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhcccccccchhhHHhhhhhhccccCccce
Confidence            7899999999999998854321111   1122333444444455555555567766666666655432     2345789


Q ss_pred             EEEcCCCChhhhhhhhhhccCCccccccCCCeeecCCCCeEEEecCCCCCCCccchhcccccccCCCCCCcHHHHHHHhc
Q psy9553         990 LVLDGPVDSIWIENLNSVLDDNRTLTLANGDRLSMALAVKIIFEPHNIDNASPATVSRNGMVYMSSSGLDWSPIVAAWLR 1069 (1282)
Q Consensus       990 ivfDG~vd~~WiE~mnsvlDdnk~L~L~ngeri~l~~~~~~~FEv~dL~~asPAtvSRcgmvy~~~~~~~~~~~~~swl~ 1069 (1282)
                      ||+| ++|....+..|++|   |+|-=|       |+++.+||-+.++...-|+-+|||-+|.|.+-.   ..-+..||.
T Consensus       112 iIid-e~d~l~~~a~n~Ll---k~lEep-------~~~~~fIl~t~~~~~ll~tI~SRc~~i~~~~~~---~~~~~~~L~  177 (207)
T d1a5ta2         112 VWVT-DAALLTDAAANALL---KTLEEP-------PAETWFFLATREPERLLATLRSRCRLHYLAPPP---EQYAVTWLS  177 (207)
T ss_dssp             EEES-CGGGBCHHHHHHHH---HHHTSC-------CTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC---HHHHHHHHH
T ss_pred             EEec-hhhhhhhhhhHHHH---HHHHhh-------cccceeeeeecChhhhhhhhcceeEEEecCCCC---HHHHHHHHH
Confidence            9999 79999999999997   344322       688999999999999999999999999998544   234455553
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure