Psyllid ID: psy9573

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------81
MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISNDLIIKIDKNIGIISDNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKISQIDDQIINIPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFLKINNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIINNAINALINSVCKNFNAKLRN
ccccHHHHHHHccccccHHHHHHHHHHccccccEEEEcccccccEEEEEEEEEcccccccccEEEEEEccccccEEEccccccccccEEEEEccccEEccccccccEEEEcccccccccccccccHHHHccccccccEEEccccccccccHHHHHcccccEEEEcccccHHHHcccHHHHHHHHHHccccccccccccccccccccEEEEEEccccccccEEEEEEccccccccHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccccEEEEcccccEEEcccccEEEEccccEEEEcccccEEEEEccccccccccccccEEEEEEcccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHccEEcEEEEEccccccccEEEEEEEEHHHHHHHHcccccHHHHHHHHHHcccEEEEEccEEEEEcccccccccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEccccHHHHHHHccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcEEcccccccccccccccccccEEEEEEEEccccccccccccccccEEEHHHHHHHHHcccccEEEEccccccccccEEEEEEccEEEEEEEEEcHHHHHHccccccEEEEEEEcHHHHHcccccccccccccccccEEEEEEcccccHHHHHHHHHcccccccccccEEEEEEEEEEEccccccccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccEEcc
ccccHHHHHHHccccccHHHHHHHHHHcccEEccEcccccccccEEEEEEEEEccccccccEEEEEEEcccccEEEEEcccccccccEEEEEEEccEccccccccccEEEEEEEccccccccEEcHHHcccccccccEEEccccccccHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEcccHcccEEEEEEEccccccccHHHHHHHHHHccccccccEEEHHHHHHHHcccccccEcHHHHcccEEEEEcccccEEEEEcccEEEEcccEEEEEcccccEEEEEEcccccccccHccccEEHHHHHHcHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEccHHcccccccEEEcHHHHHHHHcccccHHHHHHHHHHcccEEEcccccEEEEccccccccccHHHHHHHHHHHHcHHHccccccccccccccccHHcccHHHHHHHHHHccccEEEEEEcccHHHHHHHcccccccccEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccEEEcccccHccccccccccccccEEEEEEEccccHHHcccccccccEEEcHHHHHHHHHHcccEEEccccccccccccEEEEEcccEEEEEccccHHHHHHccccccEEEEEEEHHHHHHccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHccHHHHEEEEEEEEcccccccccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccEccc
mqipenwlrtiinpklssndlANLLtmsgletekietnipiFSKIIIGKIIniikhpdidnfnickvdtykNILDIVcnipnirvglkvpcaiigssLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKInnknkylfelpedapigknfydyykfNNLKFVIkltpnrgdcLSLLGIAREIsilsntplkllntkitlpnykeilpvkISAIDLCGrfsgriirginpkaltpkwmkirleDSGQKLVSVLHDITNYVMLElgipinifdlskisgelnirwgnigetiKISNDLIIkidknigiisdnfkIISLSgiingfdasvtlntkDIYLGVAfwwpnsirgksnhynlvtessyrfergidfsKTIKCLERVTNLIIEIcgtssskisqiddqiinipvrkeIKVRSERVIKILGIKLTNQEISNIFIRLKFHFiqknniflvippahrfdleIEEDIIEEIIRIygfenipislpitvskispikegYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFsqninnypiellnpiSKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYlhdkfikdspftvsgykELKKIAVIAygpllepqwgeenrnidyfdlkndlenlffpiKLNFLKInnsilhpnrsalifkktknigfigeihpilqqkydlplapifFEVDALELqkrqipnyiqiskfpnVVRDIVFIFNKNINLQDVMDTMFFeknnnsncfiiQSISLFDKYCGKKLKDNEKSFAFRCIlqdpkktlKNNIINNAINALINSVCKNFNAKLRN
MQIPENWLRTiinpklssndLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDCLSLLGIAREISilsntplkllntKITLPNYKEILPVKISAIDLCGRFsgriirginpkaltpkwMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISNDLIIKIDKNIGIISDNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEIcgtssskisqiddqiinipvrkeikvrsERVIKIlgikltnqeISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVylhdkfikdspftvSGYKELKKIAVIAYGpllepqwgeeNRNIDYFDLKNDLENLFFPIKLNFLKINNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIINNAINALINSVCKNFNAKLRN
MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNipifskiiigkiiniikHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETikisndliikidknigiisdnFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTssskisqiddqiiNIPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLeieediieeiiRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFLKINNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKnniinnainalinSVCKNFNAKLRN
******WLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISNDLIIKIDKNIGIISDNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKISQIDDQIINIPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFLKINNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIINNAINALINSVCKNFN*****
MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISNDLIIKIDKNIGIISDNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKISQIDDQIINIPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFENIPI******************LFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKD**F***GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFLKINNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIINNAINALINSVCKNFNAKLRN
MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISNDLIIKIDKNIGIISDNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKISQIDDQIINIPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFLKINNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIINNAINALINSVCKNFNAKLRN
*QIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISNDLIIKIDKNIGIISDNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKISQIDDQIINIPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDS*FTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFLKINNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIINNAINALINSVCKNFNAKL**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISNDLIIKIDKNIGIISDNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKISQIDDQIINIPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFLKINNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIINNAINALINSVCKNFNAKLRN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query809 2.2.26 [Sep-21-2011]
Q2SVE3810 Phenylalanine--tRNA ligas yes N/A 0.992 0.991 0.436 0.0
Q3JT07810 Phenylalanine--tRNA ligas yes N/A 0.992 0.991 0.437 0.0
Q63TM7810 Phenylalanine--tRNA ligas yes N/A 0.992 0.991 0.436 0.0
Q62KI7810 Phenylalanine--tRNA ligas yes N/A 0.992 0.991 0.436 0.0
Q472N3815 Phenylalanine--tRNA ligas yes N/A 0.993 0.986 0.435 0.0
Q39H50809 Phenylalanine--tRNA ligas yes N/A 0.991 0.991 0.441 0.0
Q8XZ24809 Phenylalanine--tRNA ligas yes N/A 0.990 0.990 0.424 0.0
Q7WKR4805 Phenylalanine--tRNA ligas yes N/A 0.986 0.991 0.393 0.0
Q7VVR5805 Phenylalanine--tRNA ligas yes N/A 0.986 0.991 0.393 0.0
Q7W7C6805 Phenylalanine--tRNA ligas yes N/A 0.986 0.991 0.390 0.0
>sp|Q2SVE3|SYFB_BURTA Phenylalanine--tRNA ligase beta subunit OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=pheT PE=3 SV=1 Back     alignment and function desciption
 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/816 (43%), Positives = 538/816 (65%), Gaps = 13/816 (1%)

Query: 1   MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDID 60
           MQ PE+WLRT ++P+L++++L++ LTM+GLE E +    P   KI++G+++ ++KHPD D
Sbjct: 1   MQFPESWLRTFVDPQLTTDELSHALTMAGLEVESLRPAAPPTEKIVVGRVLEVVKHPDAD 60

Query: 61  NFNICKVDTYKN-ILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKS-FIINIEKKYKIK 118
             N+C+VD      L IVC  PN+  G+KVP A++G+ L    +  + F I + K   ++
Sbjct: 61  KLNVCQVDAGTGATLQIVCGAPNVAPGIKVPVALVGAKLPPAEEGGAPFAIKLSKLRGVE 120

Query: 119 SYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDCLSLLG 178
           S G+LCS  +LK++  +  L  LPED P+G++  D    ++  F IKLTPN+ DCLS+ G
Sbjct: 121 SQGMLCSARELKLSEDHGGLMILPEDTPVGQDIRDALNLDDTVFEIKLTPNKADCLSVFG 180

Query: 179 IAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKWM 238
           IARE + ++  PL   + +       E LPVKISA DLCGRFSGR+IRG+N +A TP+WM
Sbjct: 181 IARETAAITGAPLAAPDIRPVRAELTETLPVKISAPDLCGRFSGRVIRGVNARAKTPRWM 240

Query: 239 KIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISNDLI 298
             RLE +GQ+ VS L DI+NYVM ELG P ++FDL KI G +++RWG  GE++K+ N   
Sbjct: 241 VERLERAGQRSVSALVDISNYVMFELGRPSHVFDLDKIHGGIDVRWGKRGESLKLLNGNT 300

Query: 299 IKIDKNIGIISDNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVT 358
           +++D+ +G+ISD+ ++ SL+GI+ G   +VTL+T +IYL  AFWWP+SIRG++  YN  T
Sbjct: 301 VELDETVGVISDDAQVESLAGIMGGDSTAVTLDTTNIYLEAAFWWPDSIRGRARKYNFST 360

Query: 359 ESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKISQIDDQIINIPVRKEIKVRSERV 418
           ++++RFERG+D+S T++ +ER+T LI++ICG    +   +DDQI+N+P R  + +R+ R 
Sbjct: 361 DAAHRFERGVDYSTTVEHVERITQLILDICG---GQAGPVDDQIVNLPQRAPVSMRASRA 417

Query: 419 IKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFEN 478
            +I+G+++   EI+ IF RL   F +  ++F V PP HRFD+EIEED+IEE+ RIYGFE 
Sbjct: 418 NRIIGVEIDKDEIAQIFTRLGLAFERDGDVFRVTPPPHRFDIEIEEDLIEEVARIYGFEK 477

Query: 479 IPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPI 538
           IP   P+  S++    E  +S+ +IRH LA  DY E +N+SF++   E+DF+ N N  P+
Sbjct: 478 IPARPPVARSEMRATDETRRSVHAIRHALAARDYAETVNFSFVDAEWERDFAGNDN--PV 535

Query: 539 ELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSG 598
            LLNPI+ + + MR+TL GSLV  + +NL R+ ER+R+FE   V++ D  +K     V G
Sbjct: 536 RLLNPIASQLSVMRTTLFGSLVGVLRHNLNRRAERVRVFEAGRVFIADPAVKAGELAVEG 595

Query: 599 YKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFLKINNSILHPNRS 658
           Y + K+I  +AYGP+++ QWG   R +DYFD+K DLE L  P+   F+K  +S LHP R 
Sbjct: 596 YAQPKRIGALAYGPVVDEQWGATTRQVDYFDVKGDLEALLAPVVARFVKAEHSALHPGRG 655

Query: 659 ALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKFPNVVRD 718
           A I    + +G+IGE+HP L QKY+LP AP+ FE+DA  L  R +P   ++SKFP V RD
Sbjct: 656 ARIEVDGRAVGWIGELHPRLMQKYELPHAPVMFEIDADALVARALPAPSEVSKFPPVRRD 715

Query: 719 IVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKK-----LKDNEKSFAFR 773
           I  + ++ + +Q + D M      ++ C  +Q ++LFD++  K      +  +EKS AFR
Sbjct: 716 IAVVVDQKVEVQALFDEMKKALAEDA-CKFVQKVALFDEFRAKSNTSSGMSAHEKSLAFR 774

Query: 774 CILQDPKKTLKNNIINNAINALINSVCKNFNAKLRN 809
             LQD   TL++  ++ AI  L++ + + + A+LR 
Sbjct: 775 VTLQDAAGTLQDETVDQAIQTLVDRMARVYGARLRG 810

Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) (taxid: 271848)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0
>sp|Q3JT07|SYFB_BURP1 Phenylalanine--tRNA ligase beta subunit OS=Burkholderia pseudomallei (strain 1710b) GN=pheT PE=3 SV=1 Back     alignment and function description
>sp|Q63TM7|SYFB_BURPS Phenylalanine--tRNA ligase beta subunit OS=Burkholderia pseudomallei (strain K96243) GN=pheT PE=3 SV=1 Back     alignment and function description
>sp|Q62KI7|SYFB_BURMA Phenylalanine--tRNA ligase beta subunit OS=Burkholderia mallei (strain ATCC 23344) GN=pheT PE=3 SV=1 Back     alignment and function description
>sp|Q472N3|SYFB_CUPPJ Phenylalanine--tRNA ligase beta subunit OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=pheT PE=3 SV=1 Back     alignment and function description
>sp|Q39H50|SYFB_BURS3 Phenylalanine--tRNA ligase beta subunit OS=Burkholderia sp. (strain 383) GN=pheT PE=3 SV=1 Back     alignment and function description
>sp|Q8XZ24|SYFB_RALSO Phenylalanine--tRNA ligase beta subunit OS=Ralstonia solanacearum (strain GMI1000) GN=pheT PE=3 SV=1 Back     alignment and function description
>sp|Q7WKR4|SYFB_BORBR Phenylalanine--tRNA ligase beta subunit OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=pheT PE=3 SV=1 Back     alignment and function description
>sp|Q7VVR5|SYFB_BORPE Phenylalanine--tRNA ligase beta subunit OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=pheT PE=3 SV=1 Back     alignment and function description
>sp|Q7W7C6|SYFB_BORPA Phenylalanine--tRNA ligase beta subunit OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) GN=pheT PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query809
340786697808 phenylalanyl-tRNA synthetase subunit bet 0.996 0.997 0.501 0.0
399020912808 phenylalanyl-tRNA synthetase, beta subun 0.996 0.997 0.496 0.0
300311299808 phenylalanyl-tRNA synthetase subunit bet 0.996 0.997 0.484 0.0
445497629808 phenylalanyl-tRNA synthetase beta chain 0.997 0.998 0.488 0.0
329907562809 Phenylalanyl-tRNA synthetase beta chain 0.997 0.997 0.494 0.0
134095001809 phenylalanyl-tRNA synthetase subunit bet 0.996 0.996 0.502 0.0
409405795808 phenylalanyl-tRNA synthetase beta chain 0.996 0.997 0.487 0.0
152980129809 phenylalanyl-tRNA synthetase subunit bet 0.996 0.996 0.495 0.0
415946944808 Phenylalanyl-tRNA synthetase beta chain 0.996 0.997 0.483 0.0
398833352798 phenylalanyl-tRNA synthetase, beta subun 0.983 0.997 0.483 0.0
>gi|340786697|ref|YP_004752162.1| phenylalanyl-tRNA synthetase subunit beta [Collimonas fungivorans Ter331] gi|340551964|gb|AEK61339.1| Phenylalanyl-tRNA synthetase beta chain [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
 Score =  912 bits (2356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/809 (50%), Positives = 586/809 (72%), Gaps = 3/809 (0%)

Query: 1   MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDID 60
           MQ  E+WLR++++PK++S++L++LLTMSGLE E++E   P F+ I++G ++   KHP+ D
Sbjct: 1   MQFSESWLRSMVDPKMTSDELSHLLTMSGLEVEEVEPVAPPFTNIVVGLVVETAKHPNAD 60

Query: 61  NFNICKVDT-YKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKS 119
             N+C+VD     +L+IVC  PN+R GLKVPCA++G+ L      K F I + +   ++S
Sbjct: 61  RLNVCQVDVGAGTMLNIVCGAPNVRPGLKVPCAMVGAILPPGADGKPFEIKLGQLRGVES 120

Query: 120 YGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDCLSLLGI 179
            G+LCS  +LK++  +  L ELPEDAP+GKNF DY++ N+LKF IKLTPN+ DCLS+LG+
Sbjct: 121 QGMLCSARELKLSEDHGGLLELPEDAPVGKNFRDYFELNDLKFTIKLTPNKADCLSVLGV 180

Query: 180 AREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKWMK 239
           ARE+S L+ TPLK    K    N  E LPVKISA DLCGRFSGR+IRG+N KA TP+WMK
Sbjct: 181 AREVSALTGTPLKQPVFKTVSANIAETLPVKISAPDLCGRFSGRVIRGLNAKATTPRWMK 240

Query: 240 IRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISNDLII 299
            RLE SGQ+ +S L DI+NYVMLELG P ++FDL KI G L++RWG  GE++K+ N   +
Sbjct: 241 QRLERSGQRPISALVDISNYVMLELGRPTHVFDLDKIHGGLDVRWGKAGESLKLLNGNTV 300

Query: 300 KIDKNIGIISDNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTE 359
            +D  IG+I+D+ +I SL+GI+ G   +V+L T++IYL  AFWWP +I+G++  +N  T+
Sbjct: 301 SVDDWIGVIADDRQIESLAGIMGGDATAVSLETQNIYLEAAFWWPQAIQGRARRFNFSTD 360

Query: 360 SSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKISQIDDQIINIPVRKEIKVRSERVI 419
           + +RFERG+DF+ T++ +ER+T L++EICGT  +++  +DDQ +N+P R  +KVR+ R I
Sbjct: 361 AGHRFERGVDFATTVEHIERITALLVEICGTPETQVGPVDDQSVNLPKRDPVKVRTARAI 420

Query: 420 KILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFENI 479
           K++G+ L++ +I++IF RL   F Q N +F V PP++RFD+EIEED++EEI R+YGFENI
Sbjct: 421 KVIGVPLSDSQIADIFTRLGLGFTQDNGVFSVTPPSYRFDIEIEEDLVEEIARVYGFENI 480

Query: 480 PISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIE 539
           P   P+  + +    E  +SLFSIRH+LA  DYQEVIN+SF+E++ E DF+ N+   PI+
Sbjct: 481 PALPPVAPNAMYIAPENQRSLFSIRHRLADLDYQEVINFSFVEEAWEADFAGNLQ--PIK 538

Query: 540 LLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGY 599
           LLNPI+ + + MRS+L+ SLV N+ YNL RKL R+R+FE   VY  ++ +++ P  V+G+
Sbjct: 539 LLNPIASQMSAMRSSLVASLVANVKYNLNRKLNRVRIFETGAVYTRNQEVQNGPLAVAGF 598

Query: 600 KELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFLKINNSILHPNRSA 659
           ++ K++A +AYGP  + QWG+ +R +D+FD+K DLE LF P  L F K+ +  LHP RSA
Sbjct: 599 EQPKRVAGLAYGPHADEQWGQASRTVDFFDVKADLEALFAPAALRFTKLEHPALHPGRSA 658

Query: 660 LIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKFPNVVRDI 719
            +      +GFIGE+HP LQQKY+LPLAP+ FEVDAL LQ+RQ+P Y++ISKFP VVRD+
Sbjct: 659 QVLLGDVAVGFIGELHPRLQQKYELPLAPVVFEVDALALQQRQVPAYVEISKFPAVVRDL 718

Query: 720 VFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDP 779
             +  + +  QD++D    E+  N  C I+Q+I LFD+Y GK L+++EKS AFR  LQD 
Sbjct: 719 AVVVKQAVYAQDLLDVFAAEQQGNPACRILQAIVLFDEYHGKGLENDEKSLAFRFTLQDT 778

Query: 780 KKTLKNNIINNAINALINSVCKNFNAKLR 808
           + TL+++ +  A++ALI +V K   A+LR
Sbjct: 779 ENTLQDDTVEAAMSALIAAVSKVPTARLR 807

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|399020912|ref|ZP_10723036.1| phenylalanyl-tRNA synthetase, beta subunit [Herbaspirillum sp. CF444] gi|398093878|gb|EJL84252.1| phenylalanyl-tRNA synthetase, beta subunit [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
>gi|300311299|ref|YP_003775391.1| phenylalanyl-tRNA synthetase subunit beta protein [Herbaspirillum seropedicae SmR1] gi|300074084|gb|ADJ63483.1| phenylalanyl-tRNA synthetase beta chain protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
>gi|445497629|ref|ZP_21464484.1| phenylalanyl-tRNA synthetase beta chain [Janthinobacterium sp. HH01] gi|444787624|gb|ELX09172.1| phenylalanyl-tRNA synthetase beta chain [Janthinobacterium sp. HH01] Back     alignment and taxonomy information
>gi|329907562|ref|ZP_08274685.1| Phenylalanyl-tRNA synthetase beta chain [Oxalobacteraceae bacterium IMCC9480] gi|327546939|gb|EGF31845.1| Phenylalanyl-tRNA synthetase beta chain [Oxalobacteraceae bacterium IMCC9480] Back     alignment and taxonomy information
>gi|134095001|ref|YP_001100076.1| phenylalanyl-tRNA synthetase subunit beta [Herminiimonas arsenicoxydans] gi|133738904|emb|CAL61951.1| Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase beta chain) (PheRS) [Herminiimonas arsenicoxydans] Back     alignment and taxonomy information
>gi|409405795|ref|ZP_11254257.1| phenylalanyl-tRNA synthetase beta chain protein [Herbaspirillum sp. GW103] gi|386434344|gb|EIJ47169.1| phenylalanyl-tRNA synthetase beta chain protein [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|152980129|ref|YP_001353182.1| phenylalanyl-tRNA synthetase subunit beta [Janthinobacterium sp. Marseille] gi|151280206|gb|ABR88616.1| phenylalanyl-tRNA synthetase beta chain [Janthinobacterium sp. Marseille] Back     alignment and taxonomy information
>gi|415946944|ref|ZP_11556532.1| Phenylalanyl-tRNA synthetase beta chain [Herbaspirillum frisingense GSF30] gi|407758156|gb|EKF68025.1| Phenylalanyl-tRNA synthetase beta chain [Herbaspirillum frisingense GSF30] Back     alignment and taxonomy information
>gi|398833352|ref|ZP_10591486.1| phenylalanyl-tRNA synthetase, beta subunit [Herbaspirillum sp. YR522] gi|398221709|gb|EJN08111.1| phenylalanyl-tRNA synthetase, beta subunit [Herbaspirillum sp. YR522] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query809
TIGR_CMR|CBU_1321792 CBU_1321 "phenylalanyl-tRNA sy 0.967 0.988 0.307 1.2e-111
UNIPROTKB|P07395795 pheT "phenylalanyl-tRNA synthe 0.975 0.992 0.315 8.1e-108
TIGR_CMR|CPS_2995807 CPS_2995 "phenylalanyl-tRNA sy 0.974 0.976 0.309 4e-106
UNIPROTKB|Q9KSN6795 pheT "Phenylalanine--tRNA liga 0.976 0.993 0.308 6.5e-106
TIGR_CMR|VC_1220795 VC_1220 "phenylalanyl-tRNA syn 0.976 0.993 0.308 6.5e-106
TIGR_CMR|SO_2086795 SO_2086 "phenylalanyl-tRNA syn 0.976 0.993 0.308 1.1e-105
TIGR_CMR|CHY_1570798 CHY_1570 "phenylalanyl-tRNA sy 0.965 0.978 0.285 6e-80
TIGR_CMR|BA_4803806 BA_4803 "phenylalanyl-tRNA syn 0.971 0.975 0.258 3e-78
TIGR_CMR|GSU_1520801 GSU_1520 "phenylalanyl-tRNA sy 0.927 0.936 0.273 7.7e-71
TIGR_CMR|DET_0366809 DET_0366 "phenylalanyl-tRNA sy 0.933 0.933 0.269 1.2e-67
TIGR_CMR|CBU_1321 CBU_1321 "phenylalanyl-tRNA synthetase, beta subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
 Score = 1102 (393.0 bits), Expect = 1.2e-111, P = 1.2e-111
 Identities = 251/816 (30%), Positives = 421/816 (51%)

Query:     1 MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNXXXXXXXXXXXXXXXXXHPDID 60
             M++ E WLR  +NP + +  L   LTM+GLE + ++                   HPD D
Sbjct:     1 MKLSEQWLREWVNPPVDTEKLTAQLTMAGLEVDSVKPAARTLEKVVVGEVIAREKHPDAD 60

Query:    61 NFNICKVDTYKNI-LDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKS 119
               ++C+VD  ++  L+IVC  PN+R GLKV   ++G  +  +  KK+      K   + S
Sbjct:    61 RLSVCRVDVGEDEPLEIVCGAPNVRTGLKVAVVLVGGVVGDLKVKKT------KLRGVVS 114

Query:   120 YGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDCLSLLGI 179
              G++CSE ++ ++ +++ + ELP DAPIGKN  +Y   ++    I+LTPNRGDC S+ GI
Sbjct:   115 NGMICSEREMGLSEQHEGIMELPADAPIGKNIQEYLTLDDYILDIELTPNRGDCASVRGI 174

Query:   180 AREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKWMK 239
             ARE+  ++  P+K  N         ++ PV++ A   C R+ GR+IRG++  + TP W+ 
Sbjct:   175 AREVGAINRLPIKGPNLVTVSATINDVFPVEVKAEKACPRYIGRVIRGVDSHSQTPLWIC 234

Query:   240 IRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETXXXXXXXXX 299
              RL  SG + +  + D+ NYVMLELG P++ FDLS++   + +R+    E          
Sbjct:   235 ERLRRSGLRTIHPVVDVMNYVMLELGQPLHAFDLSRLVEGIEVRFAKADEKITLIDETEI 294

Query:   300 XXXXXXXXXXXXFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTE 359
                          +  +L+GI+ G +++V   T+ I+L  A++ P  I   + HY++ T+
Sbjct:   295 ALTERMLVIADKSRPQALAGIMGGANSAVNEKTEAIFLESAYFSPGEIALTARHYDMQTD 354

Query:   360 SSYRFERGIDFSKTIKCLERVTNLIIEICGTXXXXXXXXXXXXXNIPVRKEIKVRSERVI 419
             SSYRFERG+DF      +ER T L+I+I G              ++P    I +R ER+ 
Sbjct:   355 SSYRFERGVDFKLQTLAMERATELLIQITG-GSPGPLIEVCSETHLPKIPRIILRPERIK 413

Query:   420 KILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLXXXXXXXXXXXRIYGFENI 479
             ++LGI++   E+S +   L    +++ N ++V  P+HRFD+            +YG++ I
Sbjct:   414 RLLGIEINEDEVSKLLELLGMRVVKEKNNWVVTVPSHRFDIKEEADLIEELAHLYGYDRI 473

Query:   480 PISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIE 539
             P         I+P  E   S   +R  +    Y E + YSF+ D L+   +  + +  I 
Sbjct:   474 PQLRMEGEYTIAPFSETQLSSARLRCLMTDRGYHEAVTYSFVNDELQTLLNPEVTS--IA 531

Query:   540 LLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSG- 598
             L NP++ + N MR++L   L+  + YN  R+  RIRLFEI              F  +G 
Sbjct:   532 LSNPLTAEMNVMRTSLWPGLIQVLKYNQARQTHRIRLFEIGMC-----------FNAAGN 580

Query:   599 -YKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIK----LNFLKINNSIL 653
              ++++ K+  +  G     QW E+ R +D++D+K DL  LF   +      F + ++  L
Sbjct:   581 EWQQVTKLGGLVAGDAHSLQWAEKGRRVDFYDVKGDLSALFTLTRTEAHFRFAEGHHPAL 640

Query:   654 HPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKFP 713
             HP +SA ++ K + IG++G +HP L  + +L  AP  FE++   ++   +P Y  +SKFP
Sbjct:   641 HPGQSAALYYKDQCIGYLGALHPELVDQLELTAAPFLFEMELNAIKTSILPKYHPLSKFP 700

Query:   714 NVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKY-CGKKLKDNEKSFAF 772
             ++ RDI  + ++++ + ++ + +   K+      II  +  FD Y  GK ++  +KS A 
Sbjct:   701 SIRRDIAIVVDRDVPVGNIEEEI---KSTAGQLLIITQV--FDIYESGKHIEFGKKSVAL 755

Query:   773 RCILQDPKKTLKXXXXXXXXXXXXXSVCKNFNAKLR 808
                 QDP +TL              ++ + FNAKLR
Sbjct:   756 GLTFQDPSRTLIDGEVKQIIERVLAALERKFNAKLR 791
GO:0004826 "phenylalanine-tRNA ligase activity" evidence=ISS
GO:0006432 "phenylalanyl-tRNA aminoacylation" evidence=ISS
UNIPROTKB|P07395 pheT "phenylalanyl-tRNA synthetase beta-chain" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2995 CPS_2995 "phenylalanyl-tRNA synthetase, beta subunit" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KSN6 pheT "Phenylalanine--tRNA ligase beta subunit" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1220 VC_1220 "phenylalanyl-tRNA synthetase, beta chain" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2086 SO_2086 "phenylalanyl-tRNA synthetase, beta subunit" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1570 CHY_1570 "phenylalanyl-tRNA synthetase, beta subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4803 BA_4803 "phenylalanyl-tRNA synthetase, beta subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1520 GSU_1520 "phenylalanyl-tRNA synthetase, beta subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0366 DET_0366 "phenylalanyl-tRNA synthetase, beta subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9K089SYFB_NEIMB6, ., 1, ., 1, ., 2, 00.36860.97030.9974yesN/A
Q47ZS5SYFB_COLP36, ., 1, ., 1, ., 2, 00.32360.97400.9764yesN/A
Q6LQ73SYFB_PHOPR6, ., 1, ., 1, ., 2, 00.32370.97650.9729yesN/A
Q2P100SYFB_XANOM6, ., 1, ., 1, ., 2, 00.31210.96900.9898yesN/A
Q2SVE3SYFB_BURTA6, ., 1, ., 1, ., 2, 00.43620.99250.9913yesN/A
Q87AB6SYFB_XYLFT6, ., 1, ., 1, ., 2, 00.32340.97400.9949yesN/A
Q2YBS1SYFB_NITMU6, ., 1, ., 1, ., 2, 00.38180.96900.9898yesN/A
Q3SK29SYFB_THIDA6, ., 1, ., 1, ., 2, 00.34610.96290.9974yesN/A
Q8DA39SYFB_VIBVU6, ., 1, ., 1, ., 2, 00.31690.97650.9937yesN/A
Q3IIL2SYFB_PSEHT6, ., 1, ., 1, ., 2, 00.32150.97150.9886yesN/A
Q3JBZ7SYFB_NITOC6, ., 1, ., 1, ., 2, 00.33170.96660.9861yesN/A
Q4KEV9SYFB_PSEF56, ., 1, ., 1, ., 2, 00.31690.97030.9911yesN/A
Q48JR8SYFB_PSE146, ., 1, ., 1, ., 2, 00.31850.97150.9924yesN/A
Q88K22SYFB_PSEPK6, ., 1, ., 1, ., 2, 00.31820.96780.9873yesN/A
Q7W7C6SYFB_BORPA6, ., 1, ., 1, ., 2, 00.39060.98640.9913yesN/A
Q9I0A4SYFB_PSEAE6, ., 1, ., 1, ., 2, 00.32350.96410.9848yesN/A
Q8EF99SYFB_SHEON6, ., 1, ., 1, ., 2, 00.32680.97280.9899yesN/A
Q7NYC1SYFB_CHRVO6, ., 1, ., 1, ., 2, 00.36710.96780.9974yesN/A
Q9KSN6SYFB_VIBCH6, ., 1, ., 1, ., 2, 00.32430.97650.9937yesN/A
Q6F873SYFB_ACIAD6, ., 1, ., 1, ., 2, 00.33490.96900.9886yesN/A
Q5E5G5SYFB_VIBF16, ., 1, ., 1, ., 2, 00.32060.97650.9937yesN/A
Q5GXY5SYFB_XANOR6, ., 1, ., 1, ., 2, 00.31210.96900.9898yesN/A
Q4ZUG2SYFB_PSEU26, ., 1, ., 1, ., 2, 00.31610.97150.9924yesN/A
Q3JT07SYFB_BURP16, ., 1, ., 1, ., 2, 00.43750.99250.9913yesN/A
Q7VVR5SYFB_BORPE6, ., 1, ., 1, ., 2, 00.39310.98640.9913yesN/A
Q62KI7SYFB_BURMA6, ., 1, ., 1, ., 2, 00.43620.99250.9913yesN/A
Q5F9T6SYFB_NEIG16, ., 1, ., 1, ., 2, 00.37330.96290.9898yesN/A
Q9JVA0SYFB_NEIMA6, ., 1, ., 1, ., 2, 00.37100.96660.9936yesN/A
Q8ZDX1SYFB_YERPE6, ., 1, ., 1, ., 2, 00.32760.97520.9924yesN/A
Q3BRU2SYFB_XANC56, ., 1, ., 1, ., 2, 00.31320.97280.9936yesN/A
Q8XZ24SYFB_RALSO6, ., 1, ., 1, ., 2, 00.42450.99010.9901yesN/A
Q8P7Z6SYFB_XANCP6, ., 1, ., 1, ., 2, 00.31110.97280.9949yesN/A
Q87Q59SYFB_VIBPA6, ., 1, ., 1, ., 2, 00.31580.97650.9862yesN/A
Q47CM9SYFB_DECAR6, ., 1, ., 1, ., 2, 00.39130.97770.9962yesN/A
Q7N3Q1SYFB_PHOLL6, ., 1, ., 1, ., 2, 00.33860.97520.9924yesN/A
Q82VV6SYFB_NITEU6, ., 1, ., 1, ., 2, 00.37020.96900.9949yesN/A
Q39H50SYFB_BURS36, ., 1, ., 1, ., 2, 00.44110.99130.9913yesN/A
Q472N3SYFB_CUPPJ6, ., 1, ., 1, ., 2, 00.43530.99380.9865yesN/A
Q4UW52SYFB_XANC86, ., 1, ., 1, ., 2, 00.31110.97280.9949yesN/A
Q7WKR4SYFB_BORBR6, ., 1, ., 1, ., 2, 00.39310.98640.9913yesN/A
Q883H7SYFB_PSESM6, ., 1, ., 1, ., 2, 00.31650.96900.9898yesN/A
Q5P7Y0SYFB_AROAE6, ., 1, ., 1, ., 2, 00.37060.97520.9962yesN/A
Q3KEX7SYFB_PSEPF6, ., 1, ., 1, ., 2, 00.31690.97030.9911yesN/A
Q9PFD6SYFB_XYLFA6, ., 1, ., 1, ., 2, 00.32010.97520.9962yesN/A
Q7MK40SYFB_VIBVY6, ., 1, ., 1, ., 2, 00.31690.97650.9937yesN/A
Q2SDJ7SYFB_HAHCH6, ., 1, ., 1, ., 2, 00.32060.97030.9936yesN/A
Q669Z6SYFB_YERPS6, ., 1, ., 1, ., 2, 00.32760.97520.9924yesN/A
Q63TM7SYFB_BURPS6, ., 1, ., 1, ., 2, 00.43620.99250.9913yesN/A
Q60AY9SYFB_METCA6, ., 1, ., 1, ., 2, 00.33290.97150.9936yesN/A
Q83C15SYFB_COXBU6, ., 1, ., 1, ., 2, 00.32590.96780.9886yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.200.914
3rd Layer6.1.10.921

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query809
PRK00629791 PRK00629, pheT, phenylalanyl-tRNA synthetase subun 0.0
TIGR00472797 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase 0.0
COG0072650 COG0072, PheT, Phenylalanyl-tRNA synthetase beta s 1e-169
CHL00192704 CHL00192, syfB, phenylalanyl-tRNA synthetase beta 1e-67
pfam03483159 pfam03483, B3_4, B3/4 domain 9e-51
smart00873174 smart00873, B3_4, B3/4 domain 5e-48
cd00769198 cd00769, PheRS_beta_core, Phenylalanyl-tRNA synthe 8e-45
PRK09616552 PRK09616, pheT, phenylalanyl-tRNA synthetase subun 1e-32
TIGR00471551 TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase 4e-26
cd02796103 cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain- 2e-24
pfam0314794 pfam03147, FDX-ACB, Ferredoxin-fold anticodon bind 6e-23
smart0089693 smart00896, FDX-ACB, Ferredoxin-fold anticodon bin 3e-22
smart0087468 smart00874, B5, tRNA synthetase B5 domain 3e-20
COG0073123 COG0073, ARC1, EMAP domain [General function predi 9e-20
pfam0348470 pfam03484, B5, tRNA synthetase B5 domain 1e-16
cd0215399 cd02153, tRNA_bindingDomain, The tRNA binding doma 1e-15
pfam0158895 pfam01588, tRNA_bind, Putative tRNA binding domain 5e-12
PLN02265597 PLN02265, PLN02265, probable phenylalanyl-tRNA syn 4e-10
COG3382229 COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RN 0.001
>gnl|CDD|234804 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information 
 Score =  788 bits (2037), Expect = 0.0
 Identities = 304/816 (37%), Positives = 470/816 (57%), Gaps = 34/816 (4%)

Query: 1   MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDID 60
           M+   +WL+  +NP +SS +LA  LTM GLE E +E      S +++GK++   KHP+ D
Sbjct: 1   MKFSLSWLKEYVNPDISSEELAEALTMIGLEVEGVEDVAAGLSGVVVGKVLECEKHPNAD 60

Query: 61  NFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSY 120
              +C+VD  +  L IVC  PN+R G KVP A+ G+ L        F I   K   ++S 
Sbjct: 61  KLRVCQVDVGEEPLQIVCGAPNVRAGDKVPVALPGAVL-----PGGFKIKKAKLRGVESE 115

Query: 121 GLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDCLSLLGIA 180
           G+LCS  +L +++ +  + ELPEDAP+G +  +Y   ++    I LTPNR DCLS+ GIA
Sbjct: 116 GMLCSASELGLSDDHDGIIELPEDAPVGTDAREYLGLDDTVIEISLTPNRADCLSVRGIA 175

Query: 181 REISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKWMKI 240
           RE++ L   PLKL   +       + LPV+I   DLC R++GR+I+G+   A +P W++ 
Sbjct: 176 RELAALLGLPLKLPEIEPVPATIDDKLPVEIEDPDLCPRYAGRVIKGVKNIAPSPLWLQE 235

Query: 241 RLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISNDLIIK 300
           RL  +G + ++ + DITNYVMLELG P++ FDL KI G + +R    GE +   +     
Sbjct: 236 RLRAAGIRPINNVVDITNYVMLELGQPLHAFDLDKIGGGIVVRRAKEGEKLTTLDGKERT 295

Query: 301 IDKNIGIISDNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTES 360
           +D    +I+D+ K ++L+G++ G D+ VT NT ++ L  A++ P SIR  +    L T++
Sbjct: 296 LDPEDLVIADDKKPLALAGVMGGEDSEVTENTTNVLLESAYFDPVSIRKTARRLGLRTDA 355

Query: 361 SYRFERGIDFSKTIKCLERVTNLIIEI-CGTSSSKISQIDDQIINIPVRKEIKVRSERVI 419
           SYRFERG+D + T+  LER T LI+E+  G     +  +       P    I +R ER+ 
Sbjct: 356 SYRFERGVDPALTLLALERATALILELGGGEVVEGVVDVYPL----PKEPTITLRLERIN 411

Query: 420 KILGIKLTNQEISNIFIRLKFHFIQKNN-IFLVIPPAHRFDLEIEEDIIEEIIRIYGFEN 478
           ++LG +++++EI +I  RL F   + +     V  P+ RFD+EIEED++EE+ RIYG++N
Sbjct: 412 RLLGTEISDEEIVDILKRLGFEVTEVDGDGLTVTVPSWRFDIEIEEDLVEEVARIYGYDN 471

Query: 479 IPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPI 538
           IP + P+    +  + E  + L  +R  LA   YQEVI YSF+     K F   +N  P+
Sbjct: 472 IPSTPPVAALTMGGLTEAQRLLRRLRRALAALGYQEVITYSFVSPEDAKLF--GLNPEPL 529

Query: 539 ELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSG 598
            LLNPIS++ + MR++L+  L+  + YNL R  + + LFEI  V+L D            
Sbjct: 530 LLLNPISEELSVMRTSLLPGLLEAVAYNLNRGNKDVALFEIGRVFLPD---------GDL 580

Query: 599 YKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFLKI----NNSILH 654
            +E + +A +  G  +E  WG   R +D+FDLK D+E L   + L  ++       + LH
Sbjct: 581 PREPEHLAGVLTGNRVEESWG-GKRPVDFFDLKGDVEALLEALGLPEVEFVAEFEAAALH 639

Query: 655 PNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEV--DALELQKRQIPNYIQISKF 712
           P RSA I+   K IGFIGE+HP + +K DLP     FE+  DAL    R++P Y  ISKF
Sbjct: 640 PGRSAEIYLDGKVIGFIGELHPKVLKKLDLPGRTYVFELDLDALLEAARKLPKYKPISKF 699

Query: 713 PNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAF 772
           P V RD+  + ++++   D++  +   K       +++S+ LFD Y GK + + +KS AF
Sbjct: 700 PAVRRDLALVVDEDVPAADILKAI---KKAGGK--LLESVELFDVYEGKGIGEGKKSLAF 754

Query: 773 RCILQDPKKTLKNNIINNAINALINSVCKNFNAKLR 808
           R   QDP +TL +  IN A++ ++ ++ + F A+LR
Sbjct: 755 RLTFQDPDRTLTDEEINAAMDKIVAALEEKFGAELR 790

Length = 791
>gnl|CDD|232990 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>gnl|CDD|223150 COG0072, PheT, Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|214391 CHL00192, syfB, phenylalanyl-tRNA synthetase beta chain; Provisional Back     alignment and domain information
>gnl|CDD|202662 pfam03483, B3_4, B3/4 domain Back     alignment and domain information
>gnl|CDD|214876 smart00873, B3_4, B3/4 domain Back     alignment and domain information
>gnl|CDD|238392 cd00769, PheRS_beta_core, Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>gnl|CDD|236592 PRK09616, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|232989 TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>gnl|CDD|239196 cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain Back     alignment and domain information
>gnl|CDD|202554 pfam03147, FDX-ACB, Ferredoxin-fold anticodon binding domain Back     alignment and domain information
>gnl|CDD|214893 smart00896, FDX-ACB, Ferredoxin-fold anticodon binding domain Back     alignment and domain information
>gnl|CDD|197942 smart00874, B5, tRNA synthetase B5 domain Back     alignment and domain information
>gnl|CDD|223151 COG0073, ARC1, EMAP domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|202663 pfam03484, B5, tRNA synthetase B5 domain Back     alignment and domain information
>gnl|CDD|239066 cd02153, tRNA_bindingDomain, The tRNA binding domain is also known as the Myf domain in literature Back     alignment and domain information
>gnl|CDD|216589 pfam01588, tRNA_bind, Putative tRNA binding domain Back     alignment and domain information
>gnl|CDD|215149 PLN02265, PLN02265, probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information
>gnl|CDD|225917 COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 809
PRK00629791 pheT phenylalanyl-tRNA synthetase subunit beta; Re 100.0
TIGR00472798 pheT_bact phenylalanyl-tRNA synthetase, beta subun 100.0
CHL00192704 syfB phenylalanyl-tRNA synthetase beta chain; Prov 100.0
COG0072650 PheT Phenylalanyl-tRNA synthetase beta subunit [Tr 100.0
TIGR00471551 pheT_arch phenylalanyl-tRNA synthetase, beta subun 100.0
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 100.0
PLN02265597 probable phenylalanyl-tRNA synthetase beta chain 100.0
KOG2472|consensus578 100.0
PF03483174 B3_4: B3/4 domain; InterPro: IPR005146 This entry 100.0
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 100.0
PLN02788402 phenylalanine-tRNA synthetase 100.0
TIGR00469460 pheS_mito phenylalanyl-tRNA synthetase, mitochondr 100.0
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 100.0
smart00873174 B3_4 B3/4 domain. This domain is found in tRNA syn 100.0
PRK06253529 O-phosphoseryl-tRNA synthetase; Reviewed 99.98
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 99.97
COG0073123 ARC1 EMAP domain [General function prediction only 99.96
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 99.95
cd02796103 tRNA_bind_bactPheRS tRNA-binding-domain-containing 99.94
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 99.93
PF0314794 FDX-ACB: Ferredoxin-fold anticodon binding domain; 99.92
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 99.9
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.87
PF0158895 tRNA_bind: Putative tRNA binding domain; InterPro: 99.87
KOG2783|consensus436 99.84
cd0215399 tRNA_bindingDomain The tRNA binding domain is also 99.84
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 99.84
PF0348470 B5: tRNA synthetase B5 domain; InterPro: IPR005147 99.8
TIGR02306341 RNA_lig_DRB0094 RNA ligase, DRB0094 family. The me 99.79
TIGR00470533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 99.78
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 99.78
smart0087471 B5 tRNA synthetase B5 domain. This domain is found 99.74
cd02800105 tRNA_bind_EcMetRS_like tRNA-binding-domain-contain 99.69
cd02799105 tRNA_bind_EMAP-II_like tRNA-binding-domain-contain 99.69
COG3382229 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe- 99.68
TIGR00399137 metG_C_term methionyl-tRNA synthetase C-terminal r 99.67
PRK12267648 methionyl-tRNA synthetase; Reviewed 99.6
PRK00133673 metG methionyl-tRNA synthetase; Reviewed 99.57
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 99.55
PLN02610801 probable methionyl-tRNA synthetase 99.55
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 99.51
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 99.46
cd02798107 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA 99.38
PRK08655437 prephenate dehydrogenase; Provisional 99.22
KOG2241|consensus255 99.2
COG2517219 Predicted RNA-binding protein containing a C-termi 99.19
TIGR02222107 chap_CsaA export-related chaperone CsaA. This mode 99.06
PRK10089112 tRNA-binding protein; Provisional 98.98
PHA02142366 putative RNA ligase 98.63
KOG2784|consensus483 98.39
COG2024536 Phenylalanyl-tRNA synthetase alpha subunit (archae 98.39
COG4937171 Predicted regulatory domain of prephenate dehydrog 98.22
PRK00037412 hisS histidyl-tRNA synthetase; Reviewed 96.73
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 96.67
TIGR00442397 hisS histidyl-tRNA synthetase. This model finds a 96.52
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 96.38
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 96.11
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 95.97
CHL00201 430 syh histidine-tRNA synthetase; Provisional 95.79
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 95.74
PLN02530 487 histidine-tRNA ligase 95.73
PRK12421392 ATP phosphoribosyltransferase regulatory subunit; 95.7
PRK12292391 hisZ ATP phosphoribosyltransferase regulatory subu 95.6
PRK12420 423 histidyl-tRNA synthetase; Provisional 94.89
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 94.08
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 93.77
PRK12295373 hisZ ATP phosphoribosyltransferase regulatory subu 93.31
PLN02972 763 Histidyl-tRNA synthetase 93.14
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 92.72
COG0124 429 HisS Histidyl-tRNA synthetase [Translation, riboso 92.23
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 92.09
PRK09616 552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 91.92
PRK09194 565 prolyl-tRNA synthetase; Provisional 91.54
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 91.27
PF1173474 TilS_C: TilS substrate C-terminal domain; InterPro 91.21
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 90.96
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 90.36
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 90.02
TIGR00409 568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 89.64
PRK12444639 threonyl-tRNA synthetase; Reviewed 89.12
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 88.8
PRK09350306 poxB regulator PoxA; Provisional 88.37
PLN02908686 threonyl-tRNA synthetase 88.24
PRK06462335 asparagine synthetase A; Reviewed 87.07
PTZ00417585 lysine-tRNA ligase; Provisional 86.75
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 86.66
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 86.65
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 85.59
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 85.23
PTZ00385 659 lysyl-tRNA synthetase; Provisional 84.5
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 84.19
PRK12445505 lysyl-tRNA synthetase; Reviewed 83.65
PRK12325439 prolyl-tRNA synthetase; Provisional 83.63
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 83.62
COG1190502 LysU Lysyl-tRNA synthetase (class II) [Translation 83.54
smart0087471 B5 tRNA synthetase B5 domain. This domain is found 83.48
PLN02265 597 probable phenylalanyl-tRNA synthetase beta chain 83.33
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 82.67
PRK14799545 thrS threonyl-tRNA synthetase; Provisional 81.75
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 81.4
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 81.15
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 80.3
PLN02502553 lysyl-tRNA synthetase 80.07
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=2.7e-191  Score=1712.19  Aligned_cols=783  Identities=39%  Similarity=0.669  Sum_probs=728.3

Q ss_pred             CccCHHHHhhccCCCCCHHHHHHHHHhcCceeeeEEecCCCCCCeEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCC
Q psy9573           1 MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNI   80 (809)
Q Consensus         1 M~is~~WL~e~v~~~~~~~el~~~Lt~~G~EVe~v~~~~~~~~~vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga   80 (809)
                      |+||++||+||+|+++|++||+++||++|+|||++++++..+++++||+|++++|||+||||++|+||+|++.+||||||
T Consensus         1 M~is~~WL~~~v~~~~~~~~l~~~Lt~~G~EVE~v~~~~~~~~~i~vg~i~~~~~hp~~~~L~v~~v~~g~~~~~iv~ga   80 (791)
T PRK00629          1 MKFSLSWLKEYVNPDISSEELAEALTMIGLEVEGVEDVAAGLSGVVVGKVLECEKHPNADKLRVCQVDVGEEPLQIVCGA   80 (791)
T ss_pred             CcCCHHHHHHHhCCCCCHHHHHHHHHhcCcceeeEEecccCCCCEEEEEEEEEEecCCCCeEEEEEEEcCCeEEEEEeCC
Confidence            99999999999999999999999999999999999999988899999999999999999999999999999779999999


Q ss_pred             CcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcccCccccCCCCCCCceEEcCCCCCCCCchhhhcccCce
Q psy9573          81 PNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNL  160 (809)
Q Consensus        81 ~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMlcs~~eLGl~~~~~GI~~l~~~~~~G~~~~~~~~l~D~  160 (809)
                      +|+++|++|+||++||+||+     |++|+++++||++|+||+||++||||+++++||++||+++++|+++.++++|+|+
T Consensus        81 ~n~~~g~~v~~a~~G~~l~~-----~~~i~~~~~~Gv~S~GMlcs~~ELGl~~~~~GI~~L~~~~~~G~~~~~~l~l~D~  155 (791)
T PRK00629         81 PNVRAGDKVPVALPGAVLPG-----GFKIKKAKLRGVESEGMLCSASELGLSDDHDGIIELPEDAPVGTDAREYLGLDDT  155 (791)
T ss_pred             ccccCCCEEEEEccCCCccC-----CceEeeeecCCeEEchhcccHhHcCCCcCCCCeEECCCCCCCCccHHHHhCCCCe
Confidence            99999999999999999998     8999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCCCcccccChHHHHHHHHHhcCCCCCCCCccccCCCCCcceeEEecccccccceEEEEEecccCCCCCHHHHHH
Q psy9573         161 KFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKWMKI  240 (809)
Q Consensus       161 ileieitpNR~D~ls~~GiARelaa~~~~~~~~p~~~~~~~~~~~~~~v~i~~~~~cp~y~~~vi~~v~v~~~sp~~lq~  240 (809)
                      ++||++|||||||||++||||||||+++.+++.|.+..........++|.+++++.||+|++++|+||++..+||+|||+
T Consensus       156 iiei~iTpNR~D~lS~~GiARElaa~~~~~~~~p~~~~~~~~~~~~~~v~i~~~~~c~~y~~~~i~~v~~~~~sp~wlq~  235 (791)
T PRK00629        156 VIEISLTPNRADCLSVRGIARELAALLGLPLKLPEIEPVPATIDDKLPVEIEDPDLCPRYAGRVIKGVKNIAPSPLWLQE  235 (791)
T ss_pred             EEEEecCCChHHHHHhHHHHHHHHHhhCCCCCCccccccccccCCceEEEecCCCCCccEEEEEEECCCCCCCCHHHHHH
Confidence            99999999999999999999999999999999886432222112357788877789999999999999933899999999


Q ss_pred             HHHHCCCCcccHhHHHHHHHHHHhCCCCCcccccccCCCEEEEEcCCCCeEEecCCeeeeecCCcEEEEeCCceeEeccc
Q psy9573         241 RLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISNDLIIKIDKNIGIISDNFKIISLSGI  320 (809)
Q Consensus       241 rL~~~g~~~in~iVDitNyv~le~GqPlh~fD~dki~~~i~vr~a~~~e~~~~L~~~~~~l~~~~lvi~D~~~~lslagi  320 (809)
                      ||+++|++++|++||+||||||+||||+||||+|||+++|+||.++++|+|++||+++++|+++++||+|+++++|+|||
T Consensus       236 rL~~~g~~~in~ivDi~Nyv~l~~G~pi~ayD~dki~~~i~vr~~~~~e~~~~l~~~~~~l~~~~lvi~d~~~~lsl~gi  315 (791)
T PRK00629        236 RLRAAGIRPINNVVDITNYVMLELGQPLHAFDLDKIGGGIVVRRAKEGEKLTTLDGKERTLDPEDLVIADDKKPLALAGV  315 (791)
T ss_pred             HHHhCCCCCcCHHHHHHHHHHHHhCCCceeeeHHHcCCceEEEECCCCCEEEecCCceecCCCCcEEEEeCCCeEEEeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCccceeecCCceEEEEEeecCchhHhhhccccCCCcccccccccCCCHHhHHHHHHHHHHHHHHHhCCcccccc-ceE
Q psy9573         321 INGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKIS-QID  399 (809)
Q Consensus       321 ~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tdas~RfergvD~~~~~~al~~~~~ll~~~~gg~~~~~~-~~~  399 (809)
                      |||++|+|+++|++||||+|+|+|.+||+|||+|||+||||||||||+||+.+..|++||++||.+++||+   +. ...
T Consensus       316 ~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~t~as~RfeRGvdp~~~~~al~~a~~ll~e~~~g~---i~~~~~  392 (791)
T PRK00629        316 MGGEDSEVTENTTNVLLESAYFDPVSIRKTARRLGLRTDASYRFERGVDPALTLLALERATALILELGGGE---VVEGVV  392 (791)
T ss_pred             ecCccccccCCCcEEEEEEcccChHHHHHHHHHhCCCchhhhheccCCCHHHHHHHHHHHHHHHHHHcCCe---EeeeeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999998877   43 333


Q ss_pred             eeeecCCcceEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEEeC-CEEEEeCCCccCCCCcchhhhhhhhhhhccCC
Q psy9573         400 DQIINIPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKN-NIFLVIPPAHRFDLEIEEDIIEEIIRIYGFEN  478 (809)
Q Consensus       400 ~~~~~~~~~~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~-~~~~v~vP~~R~DI~~~~DliEEIaR~yGydn  478 (809)
                      +.++.+. ++.|.++.++|+++||++|+.++|.++|++|||+++.++ +.|.|+||+||+||.+++||||||||+|||||
T Consensus       393 ~~~~~~~-~~~I~~~~~~i~~ilG~~i~~~~i~~iL~~Lgf~~~~~~~~~~~V~vPs~R~DI~~~~DliEEI~RiyGyd~  471 (791)
T PRK00629        393 DVYPLPK-EPTITLRLERINRLLGTEISDEEIVDILKRLGFEVTEVDGDGLTVTVPSWRFDIEIEEDLVEEVARIYGYDN  471 (791)
T ss_pred             ecCCCCC-CeEEEecHHHHHHHhCCCCCHHHHHHHHHHCCCEEEecCCCeEEEECCCCccccCcccHHHHHHHHHhCccc
Confidence            3344444 789999999999999999999999999999999997665 67999999999999999999999999999999


Q ss_pred             CCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHH
Q psy9573         479 IPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGS  558 (809)
Q Consensus       479 ip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpg  558 (809)
                      ||+++|......+..+..+++.+++|+.|+++||+|++||||++++.+..|++.  ...++|+||+|+|+++||+||+||
T Consensus       472 i~~~~p~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~~~~~--~~~i~l~NPis~e~~~lR~SLlp~  549 (791)
T PRK00629        472 IPSTPPVAALTMGGLTEAQRLLRRLRRALAALGYQEVITYSFVSPEDAKLFGLN--PEPLLLLNPISEELSVMRTSLLPG  549 (791)
T ss_pred             CcCcCCCcccCCCCCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHHHHhcCCC--CCeEEEeCCCchHHHHHHHhhHHH
Confidence            999988643333456667888999999999999999999999999887777554  357999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHH
Q psy9573         559 LVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLF  638 (809)
Q Consensus       559 LL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll  638 (809)
                      ||+++++|++|++.++++||+|+||.+++         ..+.|..+||++++|.....+|..+ +.+|||++||+|++++
T Consensus       550 LL~~~~~N~~~~~~~i~lFEiG~Vf~~~~---------~~~~e~~~la~~~~g~~~~~~w~~~-~~~df~~~Kg~le~ll  619 (791)
T PRK00629        550 LLEAVAYNLNRGNKDVALFEIGRVFLPDG---------DLPREPEHLAGVLTGNRVEESWGGK-RPVDFFDLKGDVEALL  619 (791)
T ss_pred             HHHHHHHHHhCCCCCEeEEeeeeeeCCCC---------CCCcchhEEEEEEECCCcccccccc-CCCCHHHHHHHHHHHH
Confidence            99999999999999999999999997542         1356889999999997777889877 7799999999999999


Q ss_pred             HhcCC---eeee-ccCCCCcCccEEEEEECCEEEEEEEeecHHHHHhCCCCCceEEEEeehHHHhcc--cCCccccCCCC
Q psy9573         639 FPIKL---NFLK-INNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKR--QIPNYIQISKF  712 (809)
Q Consensus       639 ~~lgi---~~~~-~~~~~~hPgrsA~I~~~g~~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L~~~--~~~~~~~~skf  712 (809)
                      ..+|+   +|.+ ..+++|||||||.|+++|+.+|++|+|||+++++|+|+.|+|+|||||+.|...  ..++|+|+|+|
T Consensus       620 ~~l~~~~~~~~~~~~~~~~hPg~sA~I~~~g~~iG~iG~lhP~v~~~~~l~~~v~~~Ei~l~~l~~~~~~~~~~~~~skf  699 (791)
T PRK00629        620 EALGLPEVEFVAEFEAAALHPGRSAEIYLDGKVIGFIGELHPKVLKKLDLPGRTYVFELDLDALLEAARKLPKYKPISKF  699 (791)
T ss_pred             HHcCCCceeEeecCCCcCcCCceEEEEEECCEEEEEEEEECHHHHHHcCCCCCEEEEEEEHHHhhhhhcccCCCCCCCCC
Confidence            99987   4666 677889999999999999999999999999999999999999999999999742  33479999999


Q ss_pred             CCceeeEEEEEcCCCCHHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCCceEEEEEEEEeCCCCCCCHHHHHHHH
Q psy9573         713 PNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIINNAI  792 (809)
Q Consensus       713 P~~~RDlS~vv~~~~~~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkSl~~rl~~~~~~rTLt~~ev~~~~  792 (809)
                      |+++|||||++|+++++++|.+.|++.+++     +|++|++||+|+|+++++|+||+|||++||+++|||||+||++++
T Consensus       700 P~v~RDls~vv~~~v~~~~i~~~i~~~~~~-----ll~~v~lfDvY~g~~i~~gkkSla~rl~~r~~~rTLtd~eI~~~~  774 (791)
T PRK00629        700 PAVRRDLALVVDEDVPAADILKAIKKAGGK-----LLESVELFDVYEGKGIGEGKKSLAFRLTFQDPDRTLTDEEINAAM  774 (791)
T ss_pred             CCccccEEEEECCCCCHHHHHHHHHHhCcc-----eEEEEEEEEEeCCCCCCCCceEEEEEEEEECCCCCCCHHHHHHHH
Confidence            999999999999999999999999998888     999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcccCC
Q psy9573         793 NALINSVCKNFNAKLRN  809 (809)
Q Consensus       793 ~~ii~~L~~~~~a~lR~  809 (809)
                      ++|++.|+++|||+||+
T Consensus       775 ~~ii~~L~~~~~~~LR~  791 (791)
T PRK00629        775 DKIVAALEEKFGAELRG  791 (791)
T ss_pred             HHHHHHHHHHhCcEecC
Confidence            99999999999999995

>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional Back     alignment and domain information
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information
>KOG2472|consensus Back     alignment and domain information
>PF03483 B3_4: B3/4 domain; InterPro: IPR005146 This entry represents the B3/B4 domain found in tRNA synthetase beta subunits as well as in some non-tRNA synthetase proteins Back     alignment and domain information
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>smart00873 B3_4 B3/4 domain Back     alignment and domain information
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>COG0073 ARC1 EMAP domain [General function prediction only] Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>PF01588 tRNA_bind: Putative tRNA binding domain; InterPro: IPR002547 This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1) [], human tyrosyl-tRNA synthetase [], and endothelial-monocyte activating polypeptide II Back     alignment and domain information
>KOG2783|consensus Back     alignment and domain information
>cd02153 tRNA_bindingDomain The tRNA binding domain is also known as the Myf domain in literature Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits Back     alignment and domain information
>TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>smart00874 B5 tRNA synthetase B5 domain Back     alignment and domain information
>cd02800 tRNA_bind_EcMetRS_like tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins Back     alignment and domain information
>cd02799 tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins Back     alignment and domain information
>COG3382 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only] Back     alignment and domain information
>TIGR00399 metG_C_term methionyl-tRNA synthetase C-terminal region/beta chain Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>cd02798 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA-like proteins Back     alignment and domain information
>PRK08655 prephenate dehydrogenase; Provisional Back     alignment and domain information
>KOG2241|consensus Back     alignment and domain information
>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only] Back     alignment and domain information
>TIGR02222 chap_CsaA export-related chaperone CsaA Back     alignment and domain information
>PRK10089 tRNA-binding protein; Provisional Back     alignment and domain information
>PHA02142 putative RNA ligase Back     alignment and domain information
>KOG2784|consensus Back     alignment and domain information
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG4937 Predicted regulatory domain of prephenate dehydrogenase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00874 B5 tRNA synthetase B5 domain Back     alignment and domain information
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query809
3pco_B795 Crystal Structure Of E. Coli Phenylalanine-Trna Syn 1e-120
2rhs_B800 Phers From Staphylococcus Haemolyticus- Rational Pr 1e-74
2rhq_B795 Phers From Staphylococcus Haemolyticus- Rational Pr 9e-71
1pys_B785 Phenylalanyl-Trna Synthetase From Thermus Thermophi 1e-59
2iy5_B785 Phenylalanyl-Trna Synthetase From Thermus Thermophi 1e-59
3l4g_B589 Crystal Structure Of Homo Sapiens Cytoplasmic Pheny 3e-16
3ig2_A213 The Crystal Structure Of A Putative Phenylalanyl-Tr 4e-09
3ica_A213 The Crystal Structure Of The Beta Subunit Of A Phen 8e-09
>pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase Complexed With Phenylalanine And Amp Length = 795 Back     alignment and structure 
Iteration: 1

 Score =  428 bits (1101), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/815 (31%), Positives = 413/815 (50%), Gaps = 26/815 (3%)
Query: 1   MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNXXXXXXXXXXXXXXXXXHPDID 60
           M+  E WLR  +NP + S+ LAN +TM+GLE + +E                   HP+ D
Sbjct: 1   MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFHGVVVGEVVECAQHPNAD 60
Query: 61  NFNICKVDTYKN-ILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKS 119
              + KV+   + +LDIVC  PN R GL+V  A IG+ L        F I   K     S
Sbjct: 61  KLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVL-----PGDFKIKAAKLRGEPS 115
Query: 120 YGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDCLSLLGI 179
            G+LCS  +L I++ +  + ELP DAPIG +  +Y K ++    I +TPNR DCL ++G+
Sbjct: 116 EGMLCSFSELGISDDHSGIIELPADAPIGTDIREYLKLDDNTIEISVTPNRADCLGIIGV 175
Query: 180 AREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKWMK 239
           AR++++L+  PL             + LP+ + A + C R+ GR+++GIN KA TP WMK
Sbjct: 176 ARDVAVLNQLPLVQPEIVPVGATIDDTLPITVEAPEACPRYLGRVVKGINVKAPTPLWMK 235
Query: 240 IRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETXXXXXXXXX 299
            +L   G + +  + D+TNYV+LELG P++ FD  +I G + +R    GET         
Sbjct: 236 EKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGIVVRMAKEGETLVLLDGTEA 295
Query: 300 XXXXXXXXXXXXFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTE 359
                        K +++ GI  G  + V   T+++ L  AF+ P SI G++  + L T+
Sbjct: 296 KLNADTLVIADHNKALAMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGLHTD 355
Query: 360 SSYRFERGIDFSKTIKCLERVTNLIIEICGTXXXXXXXXXXXXXNIPVRKEIKVRSERVI 419
           +S+R+ERG+D +   K +ER T L+I+ICG               +P R  I +R  ++ 
Sbjct: 356 ASHRYERGVDPALQHKAMERATRLLIDICGG-EAGPVIDITNEATLPKRATITLRRSKLD 414
Query: 420 KILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLXXXXXXXXXXXRIYGFENI 479
           +++G  + ++++++I  RL     +  + +  + P+ RFD+           R+YG+ NI
Sbjct: 415 RLIGHHIADEQVTDILRRLGCEVTEGKDEWQAVAPSWRFDMEIEEDLVEEVARVYGYNNI 474
Query: 480 PISLPITVSKI-SPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPI 538
           P   P+  S I    +E   SL  ++  L    YQEVI YSF++  +++     +    +
Sbjct: 475 P-DEPVQASLIMGTHREADLSLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVE--AL 531
Query: 539 ELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSG 598
            L +PIS + + MR +L   L+  + YN  R+  R+R+FE        +F+ D+   +  
Sbjct: 532 LLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGL-----RFVPDTQAPLGI 586
Query: 599 YKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLF-FPIKLN---FLKINNSILH 654
            ++L    VI  G   E  W      +D++DLK DLE++     KLN   F    N  LH
Sbjct: 587 RQDLMLAGVIC-GNRYEEHWNLAKETVDFYDLKGDLESVLDLTGKLNEVEFRAEANPALH 645
Query: 655 PNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKFPN 714
           P +SA I+ K + IGF+G +HP L++K DL    + FE++  +L  R +P   +IS+FP 
Sbjct: 646 PGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVFELEWNKLADRVVPQAREISRFPA 705
Query: 715 VVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRC 774
             RDI  +  +N+   D++      +        +  ++LFD Y GK + +  KS A   
Sbjct: 706 NRRDIAVVVAENVPAADIL-----SECKKVGVNQVVGVNLFDVYRGKGVAEGYKSLAISL 760
Query: 775 ILQDPKKTLKXXXXXXXXXXXXXSVCKNFNAKLRN 809
           ILQD  +TL+             ++ + F A LR+
Sbjct: 761 ILQDTSRTLEEEEIAATVAKCVEALKERFQASLRD 795
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 800 Back     alignment and structure
>pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 795 Back     alignment and structure
>pdb|1PYS|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus Length = 785 Back     alignment and structure
>pdb|2IY5|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus Complexed With Trna And A Phenylalanyl-Adenylate Analog Length = 785 Back     alignment and structure
>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic Phenylalanyl-T Synthetase Length = 589 Back     alignment and structure
>pdb|3IG2|A Chain A, The Crystal Structure Of A Putative Phenylalanyl-Trna Synthetase (Phers) Beta Chain Domain From Bacteroides Fragilis To 2.1a Length = 213 Back     alignment and structure
>pdb|3ICA|A Chain A, The Crystal Structure Of The Beta Subunit Of A Phenylalanyl-Trna Synthetase From Porphyromonas Gingivalis W83 Length = 213 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query809
3pco_B795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 0.0
2rhq_B795 Phenylalanyl-tRNA synthetase beta chain; heterotet 0.0
1b7y_B785 Phers, protein (phenylalanyl-tRNA synthetase); enz 0.0
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 1e-135
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 4e-61
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 8e-60
2cxi_A348 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 5e-44
3bu2_A199 Putative tRNA-binding protein; structural genomics 6e-34
2e8g_A241 Hypothetical protein PH0536; oligonucleotide/oligo 3e-28
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Length = 795 Back     alignment and structure
 Score =  817 bits (2112), Expect = 0.0
 Identities = 266/817 (32%), Positives = 449/817 (54%), Gaps = 30/817 (3%)

Query: 1   MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDID 60
           M+  E WLR  +NP + S+ LAN +TM+GLE + +E     F  +++G+++   +HP+ D
Sbjct: 1   MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFHGVVVGEVVECAQHPNAD 60

Query: 61  NFNICKVDT-YKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKI-- 117
              + KV+     +LDIVC  PN R GL+V  A IG+ L        F I   K  K+  
Sbjct: 61  KLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVL-----PGDFKI---KAAKLRG 112

Query: 118 -KSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDCLSL 176
             S G+LCS  +L I++ +  + ELP DAPIG +  +Y K ++    I +TPNR DCL +
Sbjct: 113 EPSEGMLCSFSELGISDDHSGIIELPADAPIGTDIREYLKLDDNTIEISVTPNRADCLGI 172

Query: 177 LGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPK 236
           +G+AR++++L+  PL             + LP+ + A + C R+ GR+++GIN KA TP 
Sbjct: 173 IGVARDVAVLNQLPLVQPEIVPVGATIDDTLPITVEAPEACPRYLGRVVKGINVKAPTPL 232

Query: 237 WMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISND 296
           WMK +L   G + +  + D+TNYV+LELG P++ FD  +I G + +R    GET+ + + 
Sbjct: 233 WMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGIVVRMAKEGETLVLLDG 292

Query: 297 LIIKIDKNIGIISDNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNL 356
              K++ +  +I+D+ K +++ GI  G  + V   T+++ L  AF+ P SI G++  + L
Sbjct: 293 TEAKLNADTLVIADHNKALAMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGL 352

Query: 357 VTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKISQIDDQIINIPVRKEIKVRSE 416
            T++S+R+ERG+D +   K +ER T L+I+ICG  +  +  I ++   +P R  I +R  
Sbjct: 353 HTDASHRYERGVDPALQHKAMERATRLLIDICGGEAGPVIDITNE-ATLPKRATITLRRS 411

Query: 417 RVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGF 476
           ++ +++G  + ++++++I  RL     +  + +  + P+ RFD+EIEED++EE+ R+YG+
Sbjct: 412 KLDRLIGHHIADEQVTDILRRLGCEVTEGKDEWQAVAPSWRFDMEIEEDLVEEVARVYGY 471

Query: 477 ENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNY 536
            NIP         +   +E   SL  ++  L    YQEVI YSF++  +++     +   
Sbjct: 472 NNIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVE-- 529

Query: 537 PIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTV 596
            + L +PIS + + MR +L   L+  + YN  R+  R+R+FE         F+ D+    
Sbjct: 530 ALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGLR-----FVPDTQ-AP 583

Query: 597 SGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLF----FPIKLNFLKINNSI 652
            G ++   +A +  G   E  W      +D++DLK DLE++        ++ F    N  
Sbjct: 584 LGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGKLNEVEFRAEANPA 643

Query: 653 LHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKF 712
           LHP +SA I+ K + IGF+G +HP L++K DL    + FE++  +L  R +P   +IS+F
Sbjct: 644 LHPGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVFELEWNKLADRVVPQAREISRF 703

Query: 713 PNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAF 772
           P   RDI  +  +N+   D++      K    N   +  ++LFD Y GK + +  KS A 
Sbjct: 704 PANRRDIAVVVAENVPAADILSEC---KKVGVN--QVVGVNLFDVYRGKGVAEGYKSLAI 758

Query: 773 RCILQDPKKTLKNNIINNAINALINSVCKNFNAKLRN 809
             ILQD  +TL+   I   +   + ++ + F A LR+
Sbjct: 759 SLILQDTSRTLEEEEIAATVAKCVEALKERFQASLRD 795
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Length = 795 Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Length = 785 Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Length = 589 Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Length = 213 Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Length = 213 Back     alignment and structure
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii} Length = 348 Back     alignment and structure
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp} Length = 199 Back     alignment and structure
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii} Length = 241 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query809
3pco_B795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 100.0
2rhq_B795 Phenylalanyl-tRNA synthetase beta chain; heterotet 100.0
1b7y_B785 Phers, protein (phenylalanyl-tRNA synthetase); enz 100.0
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 100.0
2cxi_A348 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 100.0
3cmq_A415 Phenylalanyl-tRNA synthetase, mitochondrial; class 100.0
2du7_A549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 100.0
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 100.0
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 100.0
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 100.0
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 100.0
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 100.0
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 100.0
2du3_A534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 100.0
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 100.0
3bu2_A199 Putative tRNA-binding protein; structural genomics 100.0
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 99.96
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 99.96
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 99.95
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 99.94
2e8g_A241 Hypothetical protein PH0536; oligonucleotide/oligo 99.94
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.92
1pyb_A111 Methionyl-tRNA synthetase beta subunit; oligonucle 99.92
2cwp_A112 Metrs related protein; structural GEN riken struct 99.91
1mkh_A107 Metrs;, C-terminal domain of methionyl-tRNA synthe 99.91
1gd7_A109 CSAA protein; oligonucleotide-binding fold, functi 99.9
2nzh_A113 Protein CSAA; beta barrel, oligonucleotide/oligosa 99.9
2q2i_A116 AGR_C_4014P, secretion chaperone; beta barrel, OB 99.89
2q2h_A131 AGR_C_4014P, secretion chaperone, phage-display de 99.88
1pxf_A111 Hypothetical protein YGJH; oligonucleotide-oligosa 99.85
1ntg_A172 Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligas 99.84
1fl0_A171 Endothelial-monocyte activating polypeptide II; RN 99.83
3g48_A112 Chaperone CSAA; structural genomics, niaid structu 99.81
3ers_X118 TRNA-binding protein YGJH; oligonucleotide-oligosa 99.8
1rqg_A722 Methionyl-tRNA synthetase; translation, dimerizati 99.67
3hj7_A142 TRNA(Ile)-lysidine synthase; helix-turn-helix, pse 97.32
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 97.27
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 96.78
3net_A 465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 96.71
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 96.65
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 96.3
1htt_A 423 Histidyl-tRNA synthetase; complex (tRNA synthetase 96.23
4e51_A 467 Histidine--tRNA ligase; seattle structural genomic 95.97
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 95.93
1wu7_A 434 Histidyl-tRNA synthetase; ligase, structural genom 95.89
3lc0_A 456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 95.75
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 95.44
4g84_A 464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 94.36
4g85_A 517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 94.03
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 93.35
3a2k_A464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 92.6
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 92.48
2j3l_A 572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 92.3
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 91.35
3a32_A 471 Probable threonyl-tRNA synthetase 1; aeropyrum per 91.34
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 91.16
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 90.79
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 90.36
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 89.22
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 88.51
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 88.29
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 88.08
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 87.22
1nj8_A 459 Proline-tRNA synthetase, proline--tRNA ligase; cla 86.98
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 86.97
3l4g_B 589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 86.49
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 85.63
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 85.1
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 84.7
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 84.57
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 84.32
1nj1_A501 PROR, proline-tRNA synthetase, proline--tRNA ligas 84.27
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 84.04
3err_A536 Fusion protein of microtubule binding domain from 83.84
1hc7_A 477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 82.89
2cxi_A348 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 82.39
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 81.96
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
Probab=100.00  E-value=5.4e-206  Score=1828.08  Aligned_cols=788  Identities=33%  Similarity=0.592  Sum_probs=748.5

Q ss_pred             CccCHHHHhhccCCCCCHHHHHHHHHhcCceeeeEEecCCCCCCeEEEEEEEEeeCCCCCceeEEEEecCC-ceEEEEeC
Q psy9573           1 MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYK-NILDIVCN   79 (809)
Q Consensus         1 M~is~~WL~e~v~~~~~~~el~~~Lt~~G~EVe~v~~~~~~~~~vvvg~i~~~~~hp~ad~L~~~~v~~g~-~~~~iv~g   79 (809)
                      |+||++|||||||+++|++||+++|||+|+|||+|++++..+++++||+|++|++|||||||++|+||+|+ +++|||||
T Consensus         1 M~vs~~WL~e~v~~~~~~~el~~~Lt~~GlEVE~v~~~~~~~~~~~vg~v~~~~~hp~adkL~~~~vd~G~~~~~~iv~g   80 (795)
T 3pco_B            1 MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFHGVVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCG   80 (795)
T ss_dssp             CEEEHHHHHTTCCCSCCTTHHHHHHHTTTCEEEEEEESSCCCCCEEEEEEEEEECCTTCSSCCEEEEECSSSSCEEEECC
T ss_pred             CcCCHHHHHHHcCCCCCHHHHHHHHhhcCcceeEEEecCcCCCCeEEEEEEEEEecCCCCeEEEEEEEcCCCcEEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998 78999999


Q ss_pred             CCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcccCccccCCCCCCCceEEcCCCCCCCCchhhhcccCc
Q psy9573          80 IPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNN  159 (809)
Q Consensus        80 a~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMlcs~~eLGl~~~~~GI~~l~~~~~~G~~~~~~~~l~D  159 (809)
                      |+|+++|++||||++||+||+     |++||++|+||++|+|||||++||||+++++||++||+++++|+++.+||+|+|
T Consensus        81 a~n~~~g~~v~va~~Ga~l~~-----~~~ik~~k~rG~~S~GMlcs~~elgl~~~~~gi~~l~~~~~~G~~~~~~l~l~D  155 (795)
T 3pco_B           81 APNCRQGLRVAVATIGAVLPG-----DFKIKAAKLRGEPSEGMLCSFSELGISDDHSGIIELPADAPIGTDIREYLKLDD  155 (795)
T ss_dssp             CSSCCTTCEEEEECTTCBCTT-----SCBCCCEESSSSEESSEECCSGGGTSCCCCSSCCEECSSCCTTSBHHHHTCCCC
T ss_pred             CccccCCCEEEEEecCcCcCC-----CceEcccccCCeecCcEecchhhcCCCCCCCeEEECCccccCCCCHHHHhCCCc
Confidence            999999999999999999998     899999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeecCCCcccccChHHHHHHHHHhcCCCCCCCCccccCCCCCcceeEEecccccccceEEEEEecccCCCCCHHHHH
Q psy9573         160 LKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKWMK  239 (809)
Q Consensus       160 ~ileieitpNR~D~ls~~GiARelaa~~~~~~~~p~~~~~~~~~~~~~~v~i~~~~~cp~y~~~vi~~v~v~~~sp~~lq  239 (809)
                      ++|||++||||||||||+|||||+||+++.+++.|.+..........++|.+++++.||||++++|+||++..+||+|||
T Consensus       156 ~viei~iTpNR~D~lS~~GiARElaa~~~~~~~~p~~~~~~~~~~~~~~v~v~~~~~cp~y~~~vi~~V~~~~~SP~wlq  235 (795)
T 3pco_B          156 NTIEISVTPNRADCLGIIGVARDVAVLNQLPLVQPEIVPVGATIDDTLPITVEAPEACPRYLGRVVKGINVKAPTPLWMK  235 (795)
T ss_dssp             EEEEEECCTTCCSCSSHHHHHHHHHHHHTCCCCCCCCCCCCCCSCCCCCCCCSCTTTCSEEEEEEEESCCTTCCCCTHHH
T ss_pred             eeEEeecCCCcHHHhHHHHHHHHHHHHhCCCCCCCcccccccCCCcceEEEecCcccCceEEEEEEEcccCCCCCHHHHH
Confidence            99999999999999999999999999999999999876443333456788888899999999999999999546999999


Q ss_pred             HHHHHCCCCcccHhHHHHHHHHHHhCCCCCcccccccCCCEEEEEcCCCCeEEecCCeeeeecCCcEEEEeCCceeEecc
Q psy9573         240 IRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISNDLIIKIDKNIGIISDNFKIISLSG  319 (809)
Q Consensus       240 ~rL~~~g~~~in~iVDitNyv~le~GqPlh~fD~dki~~~i~vr~a~~~e~~~~L~~~~~~l~~~~lvi~D~~~~lslag  319 (809)
                      +||+++|+||||++|||||||||++|||+|+||+|||+++|+||.++++|+|++||+++++|+++++||+|+++++|+||
T Consensus       236 ~rL~~~g~r~in~vVDitNyv~le~GqPlhafD~dki~g~i~vr~a~~ge~~~~Ld~~e~~l~~~~lvi~D~~~~~~lag  315 (795)
T 3pco_B          236 EKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGIVVRMAKEGETLVLLDGTEAKLNADTLVIADHNKALAMGG  315 (795)
T ss_dssp             HHHHHTTCCCCCSHHHHHHHHHHHHSCCEEEEEGGGCCSCCEEECCCSSCCEEETTTEEECCCTTCCEEECSSSEEEETT
T ss_pred             HHHHHcCCCCccHHHHHHHHHHHHhCCCCccccHhHCCCCeEEEEcCCCCEEEecCCceeecCCCcEEEEeCCceEEEcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCccceeecCCceEEEEEeecCchhHhhhccccCCCcccccccccCCCHHhHHHHHHHHHHHHHHHhCCccccccceE
Q psy9573         320 IINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKISQID  399 (809)
Q Consensus       320 i~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tdas~RfergvD~~~~~~al~~~~~ll~~~~gg~~~~~~~~~  399 (809)
                      ||||++|+|+++|++||||+|+|+|.+||+|||+|||+||||||||||+||+.+..|++||++||.++|||+   ++.+.
T Consensus       316 i~gg~~s~v~~~T~~i~lE~a~f~p~~Ir~tar~~~l~tdas~RfERGvDp~~~~~al~ra~~Li~e~~gg~---v~~v~  392 (795)
T 3pco_B          316 IFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGLHTDASHRYERGVDPALQHKAMERATRLLIDICGGE---AGPVI  392 (795)
T ss_dssp             TCCBSTTBCCTTCCCEEEEEEECCGGGSTTHHHHTTCCCHHHHHHHHCCCTTCHHHHHHHHHHHHHTTSSCE---EEEEE
T ss_pred             ccCCcceeeeCCCCeEEEEEeccCHHHHHHHHHHhCCCchHhhhhhcCCCHHHHHHHHHHHHHHHHHHhCCe---EEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998   77666


Q ss_pred             eeeec--CCcceEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEEeCCEEEEeCCCccCCCCcchhhhhhhhhhhccC
Q psy9573         400 DQIIN--IPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFE  477 (809)
Q Consensus       400 ~~~~~--~~~~~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~~~~~v~vP~~R~DI~~~~DliEEIaR~yGyd  477 (809)
                      +.+..  ++.++.|.++.++|+++||++++.++|.++|++|||+++..++.|.|+||+||+||++++||||||||+||||
T Consensus       393 ~~~~~~~~~~~~~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DliEEVaRiyGyd  472 (795)
T 3pco_B          393 DITNEATLPKRATITLRRSKLDRLIGHHIADEQVTDILRRLGCEVTEGKDEWQAVAPSWRFDMEIEEDLVEEVARVYGYN  472 (795)
T ss_dssp             EEECTTTSCCCCEEEEEHHHHHHHHSSCCCHHHHHHHHHHHTCEEEEETTEEEEECCSSCSSCSSHHHHHHHHHHHHCGG
T ss_pred             EeCCccCCCCCeEEEecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEeCCceEEEECCCCccccCCccHHHHHHHHHhCcc
Confidence            55543  5667899999999999999999999999999999999987667899999999999999999999999999999


Q ss_pred             CCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHH
Q psy9573         478 NIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIG  557 (809)
Q Consensus       478 nip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlp  557 (809)
                      |||+++|......+..+..+++.+++|+.|+++||+|++||||++++.++.|.+.  .+.++|+||+|+|+++||+||||
T Consensus       473 nIp~~~p~~~~~~~~~~~~~~~~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~--~~~v~l~NPis~e~svmRtsLlp  550 (795)
T 3pco_B          473 NIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPG--VEALLLPSPISVEMSAMRLSLWT  550 (795)
T ss_dssp             GSCCCCCEEECCCCCCCTTBCCHHHHHHHHHHTTCEECCCCSEECHHHHHHHSSS--CCCCBCSSCSCSTTCEECSSSHH
T ss_pred             cCCccCCCccccCCCCCHHHHHHHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCC--CCeEEEcCCCchhHHHHHHHHHH
Confidence            9999999876555556666777999999999999999999999999998888755  57899999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHH
Q psy9573         558 SLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENL  637 (809)
Q Consensus       558 gLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~l  637 (809)
                      |||+++++|++|+++++++||+|+||.+++..      ..++.|..+||++++|...+.+|..+.+.+|||++||+|+++
T Consensus       551 gLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~------~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~l  624 (795)
T 3pco_B          551 GLLATVVYNQNRQQNRVRIFESGLRFVPDTQA------PLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESV  624 (795)
T ss_dssp             HHHHHHHHHHTSSCCCCEEEEEEEEEEECTTS------STTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCccEEEeeeEEecCCCc------ccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999976532      236789999999999999999999999999999999999999


Q ss_pred             HHhcCC----eeeeccCCCCcCccEEEEEECCEEEEEEEeecHHHHHhCCCCCceEEEEeehHHHhcccCCccccCCCCC
Q psy9573         638 FFPIKL----NFLKINNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKFP  713 (809)
Q Consensus       638 l~~lgi----~~~~~~~~~~hPgrsA~I~~~g~~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L~~~~~~~~~~~skfP  713 (809)
                      |..+|+    +|++.++++|||||||.|+++|+.||++|+|||+++++|||+.|+|+|||||+.|.+...++|+|+|+||
T Consensus       625 l~~lg~~~~~~~~~~~~~~~hPGrsA~I~~~g~~iG~~GelHP~v~~~~dl~~~v~~~Eldld~L~~~~~~~~~~~skfP  704 (795)
T 3pco_B          625 LDLTGKLNEVEFRAEANPALHPGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVFELEWNKLADRVVPQAREISRFP  704 (795)
T ss_dssp             TTTSSCCSSCCEECCCCTTEEEEEEEEECTTTSCCEEEEEECTTTTTTTCCCSCEEEEEEEGGGSSBCCCCCCCCCCCSC
T ss_pred             HHHcCCCcceEEEECCCCCCCCCCEEEEEECCEEEEEEEEECHHHHHHcCCCCCEEEEEEEHHHhhcccCCCcCCCCCCC
Confidence            999984    4677788999999999999999999999999999999999999999999999999876678999999999


Q ss_pred             CceeeEEEEEcCCCCHHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCCceEEEEEEEEeCCCCCCCHHHHHHHHH
Q psy9573         714 NVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIINNAIN  793 (809)
Q Consensus       714 ~~~RDlS~vv~~~~~~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkSl~~rl~~~~~~rTLt~~ev~~~~~  793 (809)
                      +++|||||+||++++++++.++|++.+++     +|++|+|||+|+|+++++||||+|||++||+++|||||+||+++|+
T Consensus       705 ~v~RDlA~vv~~~v~~~~i~~~ir~~~~~-----ll~~V~lfDvY~g~~i~~gkKSla~~l~~r~~~rTLtdeev~~~~~  779 (795)
T 3pco_B          705 ANRRDIAVVVAENVPAADILSECKKVGVN-----QVVGVNLFDVYRGKGVAEGYKSLAISLILQDTSRTLEEEEIAATVA  779 (795)
T ss_dssp             CEEEEEEEEEETTSCHHHHHTTTSSTTTT-----TEEEEEECCCBCSTTSCTTEEEEEEEEEECCSSCCCCHHHHHHHHH
T ss_pred             CcceeEEEEeCCCCCHHHHHHHHHHhCcc-----eEEEEEEEEEecCCCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999988     9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcccCC
Q psy9573         794 ALINSVCKNFNAKLRN  809 (809)
Q Consensus       794 ~ii~~L~~~~~a~lR~  809 (809)
                      +|++.|+++|||+||+
T Consensus       780 ki~~~l~~~~ga~LR~  795 (795)
T 3pco_B          780 KCVEALKERFQASLRD  795 (795)
T ss_dssp             HHHHHTTTTTCCBCCC
T ss_pred             HHHHHHHHHhCCEeCC
Confidence            9999999999999995
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii} Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp} Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii} Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4 Back     alignment and structure
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii} Back     alignment and structure
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4 Back     alignment and structure
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4 Back     alignment and structure
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A Back     alignment and structure
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str} Back     alignment and structure
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str} Back     alignment and structure
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} PDB: 3ers_X Back     alignment and structure
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4 Back     alignment and structure
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A Back     alignment and structure
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4 Back     alignment and structure
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli} Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot, ATP-binding, ligase, nucleoti binding, tRNA processing; 2.20A {Geobacillus kaustophilus} Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii} Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 809
d1jjcb6209 b.153.1.1 (B:191-399) B3/B4 domain of PheRS, PheT 2e-36
d1jjcb5207 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheR 1e-22
d1jjcb3113 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT 6e-21
d1jjcb4104 d.58.13.1 (B:682-785) Phenylalanyl-tRNA synthetase 1e-17
d1jjcb275 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-bet 3e-17
d1fl0a_164 b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId 3e-15
d1ntga_171 b.40.4.4 (A:) C-terminal domain of metazoan tyrosy 6e-15
d1mkha_107 b.40.4.4 (A:) C-terminal domain of methionyl-tRNA 4e-10
d1jjcb177 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of Ph 2e-07
d1jjcb177 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of Ph 5e-05
d1pxfa_111 b.40.4.4 (A:) Structure-specific tRNA-binding prot 1e-06
d1pyba_107 b.40.4.4 (A:) Structure-specific tRNA-binding prot 3e-05
d1gd7a_109 b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermo 6e-05
>d1jjcb6 b.153.1.1 (B:191-399) B3/B4 domain of PheRS, PheT {Thermus thermophilus [TaxId: 274]} Length = 209 Back     information, alignment and structure

class: All beta proteins
fold: PheT/TilS domain
superfamily: PheT/TilS domain
family: B3/B4 domain of PheRS, PheT
domain: B3/B4 domain of PheRS, PheT
species: Thermus thermophilus [TaxId: 274]

 Score =  134 bits (338), Expect = 2e-36
 Identities = 51/187 (27%), Positives = 93/187 (49%), Gaps = 5/187 (2%)

Query: 207 LPVKISAIDLCGRFSGRIIRGINPKALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGI 266
             +K+   +    F+     G+     +P WM+  L  +G + ++ + D+TNYVMLE   
Sbjct: 10  FALKVEDPEGAPHFTLGYAFGLRVAP-SPLWMQRALFAAGMRPINNVVDVTNYVMLERAQ 68

Query: 267 PINIFDLSKISGELNIRWGNIGETIKISNDLIIKIDKNIGIISDNF----KIISLSGIIN 322
           P++ FDL  +   + +R    GE +K  + +   +     +I+         + L+G++ 
Sbjct: 69  PMHAFDLRFVGEGIAVRRAREGERLKTLDGVERTLHPEDLVIAGWRGEESFPLGLAGVMG 128

Query: 323 GFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTN 382
           G ++ V  +T+ I L VA + P SIR  +  + L TE+S+RFERG+D    +    R  +
Sbjct: 129 GAESEVREDTEAIALEVACFDPVSIRKTARRHGLRTEASHRFERGVDPLGQVPAQRRALS 188

Query: 383 LIIEICG 389
           L+  + G
Sbjct: 189 LLQALAG 195
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Length = 207 Back     information, alignment and structure
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Length = 113 Back     information, alignment and structure
>d1jjcb4 d.58.13.1 (B:682-785) Phenylalanyl-tRNA synthetase {Thermus thermophilus [TaxId: 274]} Length = 104 Back     information, alignment and structure
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Length = 75 Back     information, alignment and structure
>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]} Length = 164 Back     information, alignment and structure
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 107 Back     information, alignment and structure
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Length = 77 Back     information, alignment and structure
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Length = 77 Back     information, alignment and structure
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]} Length = 111 Back     information, alignment and structure
>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Aquifex aeolicus [TaxId: 63363]} Length = 107 Back     information, alignment and structure
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 274]} Length = 109 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query809
d1jjcb6209 B3/B4 domain of PheRS, PheT {Thermus thermophilus 100.0
d1jjcb5207 Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, 100.0
d1jjcb3113 Domain B2 of PheRS-beta, PheT {Thermus thermophilu 100.0
d1jjcb4104 Phenylalanyl-tRNA synthetase {Thermus thermophilus 99.94
d1ntga_171 C-terminal domain of metazoan tyrosyl-tRNA synthet 99.93
d1fl0a_164 EMAP II {Human (Homo sapiens) [TaxId: 9606]} 99.9
d1jjcb177 Domains B1 and B5 of PheRS-beta, PheT {Thermus the 99.88
d1jjcb275 Domains B1 and B5 of PheRS-beta, PheT {Thermus the 99.88
d1mkha_107 C-terminal domain of methionyl-tRNA synthetase, Me 99.86
d1pxfa_111 Structure-specific tRNA-binding protein TRBP111 {E 99.76
d1pyba_107 Structure-specific tRNA-binding protein TRBP111 {A 99.75
d1gd7a_109 TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 99.67
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 99.43
d1jjcb177 Domains B1 and B5 of PheRS-beta, PheT {Thermus the 95.5
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 94.97
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 94.76
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 94.62
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 92.74
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 92.3
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 88.35
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 85.64
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 82.28
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 81.06
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 80.39
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 80.35
>d1jjcb6 b.153.1.1 (B:191-399) B3/B4 domain of PheRS, PheT {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: All beta proteins
fold: PheT/TilS domain
superfamily: PheT/TilS domain
family: B3/B4 domain of PheRS, PheT
domain: B3/B4 domain of PheRS, PheT
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.1e-60  Score=472.04  Aligned_cols=193  Identities=27%  Similarity=0.411  Sum_probs=185.5

Q ss_pred             cceeEEecccccccceEEEEEecccCCCCCHHHHHHHHHHCCCCcccHhHHHHHHHHHHhCCCCCcccccccCCCEEEEE
Q psy9573         205 EILPVKISAIDLCGRFSGRIIRGINPKALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRW  284 (809)
Q Consensus       205 ~~~~v~i~~~~~cp~y~~~vi~~v~v~~~sp~~lq~rL~~~g~~~in~iVDitNyv~le~GqPlh~fD~dki~~~i~vr~  284 (809)
                      ..++|.+++++.||+|.+++|+||++ .+||.|||+||.++|+||+|++||||||||+|+|||+|+||+|||.+.|.||.
T Consensus         8 ~~~~i~ie~~~~C~~y~~~~I~~v~~-~~SP~wlk~rL~~~Gir~iN~iVDItNYVmle~GqPlH~fD~dki~~~i~vr~   86 (209)
T d1jjcb6           8 LPFALKVEDPEGAPHFTLGYAFGLRV-APSPLWMQRALFAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRR   86 (209)
T ss_dssp             CSSEEEESCTTTCSEEEEEEEESCCC-CCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTCCEEEEEGGGTBTEEEEEE
T ss_pred             CCeEEEeeCccCCCcEEEEEEECCcc-CCCHHHHHHHHHHcCCCccchhhhhHHHHHHHhccchhhhhhhccccceeeec
Confidence            45889999999999999999999997 89999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeEEecCCeeeeecCCcEEEE----eCCceeEecccccCccceeecCCceEEEEEeecCchhHhhhccccCCCccc
Q psy9573         285 GNIGETIKISNDLIIKIDKNIGIIS----DNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTES  360 (809)
Q Consensus       285 a~~~e~~~~L~~~~~~l~~~~lvi~----D~~~~lslagi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tda  360 (809)
                      ++++|+|.+||+++++|+++++||+    |+++|+||||||||.+|+|+++|+|||||+|+|+|..||+|||+|||+|||
T Consensus        87 a~~~E~~~~Ld~~~~~L~~~~lvI~~~~~d~~~~ialAGimGg~~s~v~~~T~~I~lEsA~F~p~~Ir~tsr~l~l~Tda  166 (209)
T d1jjcb6          87 AREGERLKTLDGVERTLHPEDLVIAGWRGEESFPLGLAGVMGGAESEVREDTEAIALEVACFDPVSIRKTARRHGLRTEA  166 (209)
T ss_dssp             CCTTCEEEBTTSCEEECCTTCEEEEEEETTEEEEEEETTTEEBSTTCCCTTCCCEEEEEEECCHHHHHHHHHHTTCCCHH
T ss_pred             cCCCCEEEecCccccccCCCceEEEeccccccccEEEeeeeccccccccccchhEEEEEeecCHHHHHHHHHhhCcchhh
Confidence            9999999999999999999999999    678999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCHHhHHHHHHHHHHHHHHHhCCcccccc-ceEee
Q psy9573         361 SYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKIS-QIDDQ  401 (809)
Q Consensus       361 s~RfergvD~~~~~~al~~~~~ll~~~~gg~~~~~~-~~~~~  401 (809)
                      |||||||+||+.+..|++||++||.++|||+   ++ .+.+.
T Consensus       167 S~RfErGvDp~~~~~al~ra~~Li~e~~gg~---~~~~~~~~  205 (209)
T d1jjcb6         167 SHRFERGVDPLGQVPAQRRALSLLQALAGAR---VAEALLEA  205 (209)
T ss_dssp             HHHHHHCCCTTCHHHHHHHHHHHHHHHHCCE---EESCCEEE
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHHHHhCCE---EccceEec
Confidence            9999999999999999999999999999998   54 45443
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjcb4 d.58.13.1 (B:682-785) Phenylalanyl-tRNA synthetase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure