Psyllid ID: psy9576
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 338 | 2.2.26 [Sep-21-2011] | |||||||
| A6SY34 | 338 | Phenylalanine--tRNA ligas | yes | N/A | 0.997 | 0.997 | 0.646 | 1e-137 | |
| A4G615 | 338 | Phenylalanine--tRNA ligas | yes | N/A | 0.997 | 0.997 | 0.646 | 1e-136 | |
| Q2SVE2 | 337 | Phenylalanine--tRNA ligas | yes | N/A | 0.994 | 0.997 | 0.592 | 1e-124 | |
| Q39H51 | 345 | Phenylalanine--tRNA ligas | yes | N/A | 0.994 | 0.973 | 0.589 | 1e-124 | |
| A3NUI8 | 337 | Phenylalanine--tRNA ligas | yes | N/A | 0.994 | 0.997 | 0.592 | 1e-124 | |
| A4JDU8 | 337 | Phenylalanine--tRNA ligas | yes | N/A | 0.994 | 0.997 | 0.589 | 1e-124 | |
| B4E7I9 | 337 | Phenylalanine--tRNA ligas | yes | N/A | 0.994 | 0.997 | 0.589 | 1e-124 | |
| Q63TM6 | 337 | Phenylalanine--tRNA ligas | yes | N/A | 0.994 | 0.997 | 0.589 | 1e-123 | |
| Q3JT08 | 337 | Phenylalanine--tRNA ligas | yes | N/A | 0.994 | 0.997 | 0.589 | 1e-123 | |
| Q62KI6 | 337 | Phenylalanine--tRNA ligas | yes | N/A | 0.994 | 0.997 | 0.589 | 1e-123 |
| >sp|A6SY34|SYFA_JANMA Phenylalanine--tRNA ligase alpha subunit OS=Janthinobacterium sp. (strain Marseille) GN=pheS PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 488 bits (1255), Expect = e-137, Method: Compositional matrix adjust.
Identities = 218/337 (64%), Positives = 274/337 (81%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEII 60
MN L++L+ QA+ DF+ A+ ++LENAK+ YLGK G++T+ +K++ ++ ERK G +I
Sbjct: 1 MNPLEQLVTQAQTDFAAAIDAAALENAKAKYLGKTGQITEQMKSLGKLAPEERKAQGAVI 60
Query: 61 NSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIF 120
NS K I+ L RD L Q++ L IDITLPGRG+ GG+HP+MR+ +R+E+IF
Sbjct: 61 NSAKEKIEAALTARRDALSNAQMEARLNAEAIDITLPGRGRGTGGIHPVMRSWQRVEEIF 120
Query: 121 YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180
SIGFD+ DGPEIE D+ NFTALNSP+NHPARSM DTFYI+ + LLRTHTSPMQ
Sbjct: 121 GSIGFDVADGPEIENDWTNFTALNSPENHPARSMQDTFYIEGKDTQGKPLLLRTHTSPMQ 180
Query: 181 IRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240
+RY+++NKPPIKVI GR YR+DSD+THSPMFHQ+EGLWID+NISF+DLKGVYLNF++ F
Sbjct: 181 VRYARMNKPPIKVIAPGRTYRVDSDATHSPMFHQVEGLWIDENISFADLKGVYLNFVKAF 240
Query: 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEK 300
FE+D++Q+RFRPSYFPFTEPSAEIDI F GPLKG WLE+SGAGQV+P VL NM DPE+
Sbjct: 241 FETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGAGQVHPTVLRNMGFDPEQ 300
Query: 301 YIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
+IGFAFGSGLERLTMLRYGI+DLRLFY+G++ FLKQF
Sbjct: 301 FIGFAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQF 337
|
Janthinobacterium sp. (strain Marseille) (taxid: 375286) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0 |
| >sp|A4G615|SYFA_HERAR Phenylalanine--tRNA ligase alpha subunit OS=Herminiimonas arsenicoxydans GN=pheS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 486 bits (1250), Expect = e-136, Method: Compositional matrix adjust.
Identities = 218/337 (64%), Positives = 273/337 (81%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEII 60
MN L +L+IQA+ DF+ A ++LENAK+ YLGK G++T+ +K++ ++ +ERK G +I
Sbjct: 1 MNPLDQLVIQAQTDFAAADDAAALENAKAKYLGKTGQITEQMKSLGKLAPDERKTQGAVI 60
Query: 61 NSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIF 120
NS K I+ L RD L Q++ L IDITLPGRG+ GG+HP+MRT +R+E+IF
Sbjct: 61 NSAKEKIEAALTARRDALSNAQMESRLNAEAIDITLPGRGRGTGGIHPVMRTWQRVEEIF 120
Query: 121 YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180
SIGFD+ DGPEIE D+ NFTALNSP+NHPARSM DTFYI+ LLRTHTSPMQ
Sbjct: 121 GSIGFDVADGPEIENDWTNFTALNSPENHPARSMQDTFYIEGNDTQGKPLLLRTHTSPMQ 180
Query: 181 IRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240
+RY+++NKPPI+VI GR YR+DSD+THSPMFHQ+EGLWID+NISF+DLKGVYLNF++ F
Sbjct: 181 VRYARMNKPPIRVIAPGRTYRVDSDATHSPMFHQVEGLWIDENISFADLKGVYLNFVKAF 240
Query: 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEK 300
FE+D++Q+RFRPSYFPFTEPSAEIDI F GPLKG WLE+SGAGQV+P V+ NM DPE+
Sbjct: 241 FETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGAGQVHPNVMRNMGFDPEQ 300
Query: 301 YIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
+IGFAFGSGLERLTMLRYGI+DLRLFY+G++ FLKQF
Sbjct: 301 FIGFAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQF 337
|
Herminiimonas arsenicoxydans (taxid: 204773) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|Q2SVE2|SYFA_BURTA Phenylalanine--tRNA ligase alpha subunit OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=pheS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 446 bits (1147), Expect = e-124, Method: Compositional matrix adjust.
Identities = 199/336 (59%), Positives = 255/336 (75%)
Query: 3 ELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINS 62
+L +++ A+ F A I++LEN K+ +LGK+G LT+ +K + + RK G IN
Sbjct: 2 DLDQIVADAQQSFEGAADITTLENEKARFLGKSGALTELLKGLGKLDPEARKTEGARINV 61
Query: 63 IKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYS 122
K ++ LN R L L L ID+TLPGRG G LHP+MRT ER+E+IF S
Sbjct: 62 AKQQVEAALNARRQALADALLNQRLAAEAIDVTLPGRGAGAGSLHPVMRTWERVEQIFRS 121
Query: 123 IGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR 182
IGFD+ DGPEIETD+ NFTALNSP+NHPARSM DTFY+ + + LLRTHTSPMQ+R
Sbjct: 122 IGFDVADGPEIETDWYNFTALNSPENHPARSMQDTFYVDGKDADGRRLLLRTHTSPMQVR 181
Query: 183 YSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242
Y+++N+PPIKVI GR YR+DSD+THSPMF+Q+EGLWID+N+SF+DLKGVY +F++ FFE
Sbjct: 182 YARMNRPPIKVIAPGRTYRVDSDATHSPMFNQVEGLWIDENVSFADLKGVYTDFLKKFFE 241
Query: 243 SDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYI 302
D+I +RFRPSYFPFTEPSAEID++F+ G G WLEISG+GQV+P V+ NM LDPE+YI
Sbjct: 242 RDDILVRFRPSYFPFTEPSAEIDMMFEHGKNAGKWLEISGSGQVHPTVIRNMGLDPERYI 301
Query: 303 GFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQFT 338
GFAFGSGLERLTMLRYG+ DLRLF++ ++ FL+QF
Sbjct: 302 GFAFGSGLERLTMLRYGVQDLRLFFENDLRFLRQFA 337
|
Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) (taxid: 271848) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|Q39H51|SYFA_BURS3 Phenylalanine--tRNA ligase alpha subunit OS=Burkholderia sp. (strain 383) GN=pheS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 446 bits (1147), Expect = e-124, Method: Compositional matrix adjust.
Identities = 198/336 (58%), Positives = 256/336 (76%)
Query: 3 ELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINS 62
+L +++ A+ F A I++LEN K+ +LGK+G LT+ +K + + RK G IN
Sbjct: 10 DLDQIVADAQQSFEQAADITTLENEKARFLGKSGALTELLKGLGKLDPEARKTEGARINV 69
Query: 63 IKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYS 122
+K ++ L R L L L ID+TLPGRG G LHP+MRT ER+E+IF S
Sbjct: 70 VKQQVEAALTARRQALADALLNQRLTAEAIDVTLPGRGAGAGSLHPVMRTWERVEQIFGS 129
Query: 123 IGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR 182
IGFD+ DGPEIETD+ NFT+LNSP+NHPARSM DTFY++ + + LLRTHTSPMQ+R
Sbjct: 130 IGFDVADGPEIETDWYNFTSLNSPENHPARSMQDTFYVEGKDADGRQLLLRTHTSPMQVR 189
Query: 183 YSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242
Y+++N+PPIKVI GR YR+DSD+THSPMF+Q+EGLWID+NISF+DLKGVY +F++ FFE
Sbjct: 190 YARMNRPPIKVIAPGRTYRVDSDATHSPMFNQVEGLWIDENISFADLKGVYTDFLKKFFE 249
Query: 243 SDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYI 302
D+I +RFRPSYFPFTEPSAEID++F+ G G WLEISG+GQV+P V+ NM LDPE+YI
Sbjct: 250 RDDILVRFRPSYFPFTEPSAEIDMMFEQGKNAGKWLEISGSGQVHPTVIRNMGLDPERYI 309
Query: 303 GFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQFT 338
GFAFGSGLERLTMLRYG+ DLRLF++ ++ FL+QF
Sbjct: 310 GFAFGSGLERLTMLRYGVQDLRLFFENDLRFLRQFA 345
|
Burkholderia sp. (strain 383) (taxid: 269483) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|A3NUI8|SYFA_BURP0 Phenylalanine--tRNA ligase alpha subunit OS=Burkholderia pseudomallei (strain 1106a) GN=pheS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 444 bits (1143), Expect = e-124, Method: Compositional matrix adjust.
Identities = 199/336 (59%), Positives = 254/336 (75%)
Query: 3 ELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINS 62
+L +++ A+ F A I++LEN K+ +LGK+G LT+ +K + + RK G IN
Sbjct: 2 DLDQIVADAQQSFEGAADITTLENEKARFLGKSGALTELLKGLGKLDPETRKTEGARINV 61
Query: 63 IKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYS 122
K ++ LN R L L L ID+TLPGRG G LHP+MRT ER+E+IF S
Sbjct: 62 AKQQVEAALNARRQALADALLNQRLAAEAIDVTLPGRGAGAGSLHPVMRTWERVEQIFRS 121
Query: 123 IGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR 182
IGFD+ DGPEIETD+ NFTALNSP+NHPARSM DTFY+ + LLRTHTSPMQ+R
Sbjct: 122 IGFDVADGPEIETDWYNFTALNSPENHPARSMQDTFYVDGKDADGRPLLLRTHTSPMQVR 181
Query: 183 YSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242
Y+++N+PPIKVI GR YR+DSD+THSPMF+Q+EGLWID+N+SF+DLKGVY +F++ FFE
Sbjct: 182 YARMNRPPIKVIAPGRTYRVDSDATHSPMFNQVEGLWIDENVSFADLKGVYTDFLKKFFE 241
Query: 243 SDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYI 302
D+I +RFRPSYFPFTEPSAEID++F+ G G WLEISG+GQV+P V+ NM LDPE+YI
Sbjct: 242 RDDILVRFRPSYFPFTEPSAEIDMMFEHGKNAGKWLEISGSGQVHPTVIRNMGLDPERYI 301
Query: 303 GFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQFT 338
GFAFGSGLERLTMLRYG+ DLRLF++ ++ FL+QF
Sbjct: 302 GFAFGSGLERLTMLRYGVQDLRLFFENDLRFLRQFA 337
|
Burkholderia pseudomallei (strain 1106a) (taxid: 357348) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|A4JDU8|SYFA_BURVG Phenylalanine--tRNA ligase alpha subunit OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=pheS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 198/336 (58%), Positives = 255/336 (75%)
Query: 3 ELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINS 62
+L +++ A+ F A I++LEN K+ +LGK+G LT+ +K + + RK G IN
Sbjct: 2 DLDQIVADAQQSFEQAADITTLENEKARFLGKSGALTELLKGLGKLDPEARKTEGARINV 61
Query: 63 IKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYS 122
K ++ L R L L L ID+TLPGRG G LHP+MRT ER+E+IF S
Sbjct: 62 AKQQVEAALTARRQALADALLNQRLAAEAIDVTLPGRGAGAGSLHPVMRTWERVEQIFRS 121
Query: 123 IGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR 182
IGFD+ DGPEIETD+ NFT+LNSP+NHPARSM DTFY++ + + LLRTHTSPMQ+R
Sbjct: 122 IGFDVADGPEIETDWYNFTSLNSPENHPARSMQDTFYVEGKDADGRQLLLRTHTSPMQVR 181
Query: 183 YSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242
Y+++N+PPIKVI GR YR+DSD+THSPMF+Q+EGLWID+NISF+DLKGVY +F++ FFE
Sbjct: 182 YARMNRPPIKVIAPGRTYRVDSDATHSPMFNQVEGLWIDENISFADLKGVYTDFLKKFFE 241
Query: 243 SDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYI 302
D+I +RFRPSYFPFTEPSAEID++F+ G G WLEISG+GQV+P V+ NM LDPE+YI
Sbjct: 242 RDDILVRFRPSYFPFTEPSAEIDMMFEHGKNAGKWLEISGSGQVHPTVIRNMGLDPERYI 301
Query: 303 GFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQFT 338
GFAFGSGLERLTMLRYG+ DLRLF++ ++ FL+QF
Sbjct: 302 GFAFGSGLERLTMLRYGVQDLRLFFENDLRFLRQFA 337
|
Burkholderia vietnamiensis (strain G4 / LMG 22486) (taxid: 269482) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|B4E7I9|SYFA_BURCJ Phenylalanine--tRNA ligase alpha subunit OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=pheS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 198/336 (58%), Positives = 255/336 (75%)
Query: 3 ELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINS 62
+L +++ A+ F A I++LEN K+ +LGK+G LT+ +K + + RK G IN
Sbjct: 2 DLDQIVADAQQSFEQAADITTLENEKARFLGKSGALTELLKGLGKLDPEARKTEGARINV 61
Query: 63 IKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYS 122
K ++ L R L L L ID+TLPGRG G LHP+MRT ER+E+IF S
Sbjct: 62 AKQQVEAALTARRQALADALLNQRLTAEAIDVTLPGRGAGAGSLHPVMRTWERVEQIFGS 121
Query: 123 IGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR 182
IGFD+ DGPEIETD+ NFT+LNSP+NHPARSM DTFY++ + + LLRTHTSPMQ+R
Sbjct: 122 IGFDVADGPEIETDWYNFTSLNSPENHPARSMQDTFYVEGKDADGRQLLLRTHTSPMQVR 181
Query: 183 YSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242
Y+++N+PPIKVI GR YR+DSD+THSPMF+Q+EGLWID+NISF+DLKGVY +F++ FFE
Sbjct: 182 YARMNRPPIKVIAPGRTYRVDSDATHSPMFNQVEGLWIDENISFADLKGVYTDFLKKFFE 241
Query: 243 SDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYI 302
D+I +RFRPSYFPFTEPSAEID++F+ G G WLEISG+GQV+P V+ NM LDPE+YI
Sbjct: 242 RDDILVRFRPSYFPFTEPSAEIDMMFEQGKNAGKWLEISGSGQVHPTVIRNMGLDPERYI 301
Query: 303 GFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQFT 338
GFAFGSGLERLTMLRYG+ DLRLF++ ++ FL+QF
Sbjct: 302 GFAFGSGLERLTMLRYGVQDLRLFFENDLRFLRQFA 337
|
Burkholderia cepacia (strain J2315 / LMG 16656) (taxid: 216591) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|Q63TM6|SYFA_BURPS Phenylalanine--tRNA ligase alpha subunit OS=Burkholderia pseudomallei (strain K96243) GN=pheS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 198/336 (58%), Positives = 253/336 (75%)
Query: 3 ELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINS 62
+L +++ A+ F A I++LEN K+ +LGK+G LT+ +K + + RK G IN
Sbjct: 2 DLDQIVADAQQSFEGAADITTLENEKARFLGKSGALTELLKGLGKLDPETRKTEGARINV 61
Query: 63 IKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYS 122
K ++ LN R L L L ID+TLPGRG G LHP+MRT ER+E+IF S
Sbjct: 62 AKQQVEAALNARRQALADALLNQRLAAEAIDVTLPGRGAGAGSLHPVMRTWERVEQIFRS 121
Query: 123 IGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR 182
IGFD+ DGPEIETD+ NFTALNSP+NHPARSM DTFY+ + LLRTHTSPMQ+R
Sbjct: 122 IGFDVADGPEIETDWYNFTALNSPENHPARSMQDTFYVDGKDADGRPLLLRTHTSPMQVR 181
Query: 183 YSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242
Y+++N+PPIKVI GR YR+DSD+THSPMF+Q+EGLWID+N+SF+DLKG Y +F++ FFE
Sbjct: 182 YARMNRPPIKVIAPGRTYRVDSDATHSPMFNQVEGLWIDENVSFADLKGAYTDFLKKFFE 241
Query: 243 SDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYI 302
D+I +RFRPSYFPFTEPSAEID++F+ G G WLEISG+GQV+P V+ NM LDPE+YI
Sbjct: 242 RDDILVRFRPSYFPFTEPSAEIDMMFEHGKNAGKWLEISGSGQVHPTVIRNMGLDPERYI 301
Query: 303 GFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQFT 338
GFAFGSGLERLTMLRYG+ DLRLF++ ++ FL+QF
Sbjct: 302 GFAFGSGLERLTMLRYGVQDLRLFFENDLRFLRQFA 337
|
Burkholderia pseudomallei (strain K96243) (taxid: 272560) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|Q3JT08|SYFA_BURP1 Phenylalanine--tRNA ligase alpha subunit OS=Burkholderia pseudomallei (strain 1710b) GN=pheS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 198/336 (58%), Positives = 253/336 (75%)
Query: 3 ELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINS 62
+L +++ A+ F A I++LEN K+ +LGK+G LT+ +K + + RK G IN
Sbjct: 2 DLDQIVADAQQSFEGAADITTLENEKARFLGKSGALTELLKGLGKLDPETRKTEGARINV 61
Query: 63 IKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYS 122
K ++ LN R L L L ID+TLPGRG G LHP+MRT ER+E+IF S
Sbjct: 62 AKQQVEAALNARRQALADALLNQRLAAEAIDVTLPGRGAGAGSLHPVMRTWERVEQIFRS 121
Query: 123 IGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR 182
IGFD+ DGPEIETD+ NFTALNSP+NHPARSM DTFY+ + LLRTHTSPMQ+R
Sbjct: 122 IGFDVADGPEIETDWYNFTALNSPENHPARSMQDTFYVDGKDADGRPLLLRTHTSPMQVR 181
Query: 183 YSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242
Y+++N+PPIKVI GR YR+DSD+THSPMF+Q+EGLWID+N+SF+DLKG Y +F++ FFE
Sbjct: 182 YARMNRPPIKVIAPGRTYRVDSDATHSPMFNQVEGLWIDENVSFADLKGAYTDFLKKFFE 241
Query: 243 SDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYI 302
D+I +RFRPSYFPFTEPSAEID++F+ G G WLEISG+GQV+P V+ NM LDPE+YI
Sbjct: 242 RDDILVRFRPSYFPFTEPSAEIDMMFEHGKNAGKWLEISGSGQVHPTVIRNMGLDPERYI 301
Query: 303 GFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQFT 338
GFAFGSGLERLTMLRYG+ DLRLF++ ++ FL+QF
Sbjct: 302 GFAFGSGLERLTMLRYGVQDLRLFFENDLRFLRQFA 337
|
Burkholderia pseudomallei (strain 1710b) (taxid: 320372) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 |
| >sp|Q62KI6|SYFA_BURMA Phenylalanine--tRNA ligase alpha subunit OS=Burkholderia mallei (strain ATCC 23344) GN=pheS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 198/336 (58%), Positives = 253/336 (75%)
Query: 3 ELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINS 62
+L +++ A+ F A I++LEN K+ +LGK+G LT+ +K + + RK G IN
Sbjct: 2 DLDQIVADAQQSFEGAADITTLENEKARFLGKSGALTELLKGLGKLDPETRKTEGARINV 61
Query: 63 IKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYS 122
K ++ LN R L L L ID+TLPGRG G LHP+MRT ER+E+IF S
Sbjct: 62 AKQQVEAALNARRQALADALLNQRLAAEAIDVTLPGRGAGAGSLHPVMRTWERVEQIFRS 121
Query: 123 IGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR 182
IGFD+ DGPEIETD+ NFTALNSP+NHPARSM DTFY+ + LLRTHTSPMQ+R
Sbjct: 122 IGFDVADGPEIETDWYNFTALNSPENHPARSMQDTFYVDGKDADGRPLLLRTHTSPMQVR 181
Query: 183 YSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242
Y+++N+PPIKVI GR YR+DSD+THSPMF+Q+EGLWID+N+SF+DLKG Y +F++ FFE
Sbjct: 182 YARMNRPPIKVIAPGRTYRVDSDATHSPMFNQVEGLWIDENVSFADLKGAYTDFLKKFFE 241
Query: 243 SDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYI 302
D+I +RFRPSYFPFTEPSAEID++F+ G G WLEISG+GQV+P V+ NM LDPE+YI
Sbjct: 242 RDDILVRFRPSYFPFTEPSAEIDMMFEHGKNAGKWLEISGSGQVHPTVIRNMGLDPERYI 301
Query: 303 GFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQFT 338
GFAFGSGLERLTMLRYG+ DLRLF++ ++ FL+QF
Sbjct: 302 GFAFGSGLERLTMLRYGVQDLRLFFENDLRFLRQFA 337
|
Burkholderia mallei (strain ATCC 23344) (taxid: 243160) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 338 | ||||||
| 399020913 | 338 | phenylalanyl-tRNA synthetase, alpha subu | 0.997 | 0.997 | 0.640 | 1e-136 | |
| 152979826 | 338 | phenylalanyl-tRNA synthetase subunit alp | 0.997 | 0.997 | 0.646 | 1e-135 | |
| 134095002 | 338 | phenylalanyl-tRNA synthetase subunit alp | 0.997 | 0.997 | 0.646 | 1e-135 | |
| 398833353 | 338 | phenylalanyl-tRNA synthetase, alpha subu | 0.997 | 0.997 | 0.646 | 1e-134 | |
| 427402175 | 337 | phenylalanyl-tRNA synthetase alpha chain | 0.988 | 0.991 | 0.631 | 1e-133 | |
| 237747671 | 338 | phenylalanyl-tRNA synthetase subunit alp | 0.997 | 0.997 | 0.643 | 1e-132 | |
| 237745474 | 338 | phenylalanyl-tRNA synthetase subunit alp | 0.997 | 0.997 | 0.643 | 1e-130 | |
| 409405794 | 342 | phenylalanyl-tRNA synthetase subunit alp | 0.997 | 0.985 | 0.639 | 1e-129 | |
| 415946943 | 342 | Phenylalanyl-tRNA synthetase alpha chain | 0.997 | 0.985 | 0.639 | 1e-129 | |
| 445497630 | 339 | phenylalanyl-tRNA synthetase alpha chain | 0.997 | 0.994 | 0.621 | 1e-129 |
| >gi|399020913|ref|ZP_10723037.1| phenylalanyl-tRNA synthetase, alpha subunit [Herbaspirillum sp. CF444] gi|398093879|gb|EJL84253.1| phenylalanyl-tRNA synthetase, alpha subunit [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 216/337 (64%), Positives = 273/337 (81%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEII 60
MN L++L+ QA+ DF+ A ++LENAK+ YLGK G++T+ +K + ++ ERK G +I
Sbjct: 1 MNSLEQLVAQAQADFAGAPDAAALENAKAKYLGKTGQITEQMKGLGKLAPEERKVQGAVI 60
Query: 61 NSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIF 120
N+ K I+ L RD L Q++ L ID+TLPGRG+ KGG+HP+MR+ +R+E+IF
Sbjct: 61 NAAKEQIENALTARRDALANAQMQERLNAEAIDVTLPGRGRGKGGIHPVMRSWQRVEEIF 120
Query: 121 YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180
SIGFD+ DGPEIETD+ NF+ALNSP+NHPARSM DTFYI+ LLRTHTSPMQ
Sbjct: 121 RSIGFDVADGPEIETDWTNFSALNSPENHPARSMQDTFYIEGNDTQGKPLLLRTHTSPMQ 180
Query: 181 IRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240
+RY+++NKPPIKVI GR YR+DSD+THSPMFHQ+EGLWI ++ISF+DLKGVYLNF++ F
Sbjct: 181 VRYARMNKPPIKVIAPGRTYRVDSDATHSPMFHQVEGLWIAEDISFADLKGVYLNFVKAF 240
Query: 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEK 300
FE+D++Q+RFRPSYFPFTEPSAEIDI F GPLKG WLE+SGAGQV+P V+ NM LDPE+
Sbjct: 241 FETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGAGQVHPTVVRNMGLDPEQ 300
Query: 301 YIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
YIGFAFGSGLERLTMLRYGI+DLRLFY+G++ FLKQF
Sbjct: 301 YIGFAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQF 337
|
Source: Herbaspirillum sp. CF444 Species: Herbaspirillum sp. CF444 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|152979826|ref|YP_001353181.1| phenylalanyl-tRNA synthetase subunit alpha [Janthinobacterium sp. Marseille] gi|166980019|sp|A6SY34.1|SYFA_JANMA RecName: Full=Phenylalanine--tRNA ligase alpha subunit; AltName: Full=Phenylalanyl-tRNA synthetase alpha subunit; Short=PheRS gi|151279903|gb|ABR88313.1| phenylalanyl-tRNA synthetase alpha chain [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 218/337 (64%), Positives = 274/337 (81%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEII 60
MN L++L+ QA+ DF+ A+ ++LENAK+ YLGK G++T+ +K++ ++ ERK G +I
Sbjct: 1 MNPLEQLVTQAQTDFAAAIDAAALENAKAKYLGKTGQITEQMKSLGKLAPEERKAQGAVI 60
Query: 61 NSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIF 120
NS K I+ L RD L Q++ L IDITLPGRG+ GG+HP+MR+ +R+E+IF
Sbjct: 61 NSAKEKIEAALTARRDALSNAQMEARLNAEAIDITLPGRGRGTGGIHPVMRSWQRVEEIF 120
Query: 121 YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180
SIGFD+ DGPEIE D+ NFTALNSP+NHPARSM DTFYI+ + LLRTHTSPMQ
Sbjct: 121 GSIGFDVADGPEIENDWTNFTALNSPENHPARSMQDTFYIEGKDTQGKPLLLRTHTSPMQ 180
Query: 181 IRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240
+RY+++NKPPIKVI GR YR+DSD+THSPMFHQ+EGLWID+NISF+DLKGVYLNF++ F
Sbjct: 181 VRYARMNKPPIKVIAPGRTYRVDSDATHSPMFHQVEGLWIDENISFADLKGVYLNFVKAF 240
Query: 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEK 300
FE+D++Q+RFRPSYFPFTEPSAEIDI F GPLKG WLE+SGAGQV+P VL NM DPE+
Sbjct: 241 FETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGAGQVHPTVLRNMGFDPEQ 300
Query: 301 YIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
+IGFAFGSGLERLTMLRYGI+DLRLFY+G++ FLKQF
Sbjct: 301 FIGFAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQF 337
|
Source: Janthinobacterium sp. Marseille Species: Janthinobacterium sp. Marseille Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|134095002|ref|YP_001100077.1| phenylalanyl-tRNA synthetase subunit alpha [Herminiimonas arsenicoxydans] gi|166980018|sp|A4G615.1|SYFA_HERAR RecName: Full=Phenylalanine--tRNA ligase alpha subunit; AltName: Full=Phenylalanyl-tRNA synthetase alpha subunit; Short=PheRS gi|133738905|emb|CAL61952.1| Phenylalanyl-tRNA synthetase alpha chain (Phenylalanine--tRNA ligase alpha chain) (PheRS) [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust.
Identities = 218/337 (64%), Positives = 273/337 (81%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEII 60
MN L +L+IQA+ DF+ A ++LENAK+ YLGK G++T+ +K++ ++ +ERK G +I
Sbjct: 1 MNPLDQLVIQAQTDFAAADDAAALENAKAKYLGKTGQITEQMKSLGKLAPDERKTQGAVI 60
Query: 61 NSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIF 120
NS K I+ L RD L Q++ L IDITLPGRG+ GG+HP+MRT +R+E+IF
Sbjct: 61 NSAKEKIEAALTARRDALSNAQMESRLNAEAIDITLPGRGRGTGGIHPVMRTWQRVEEIF 120
Query: 121 YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180
SIGFD+ DGPEIE D+ NFTALNSP+NHPARSM DTFYI+ LLRTHTSPMQ
Sbjct: 121 GSIGFDVADGPEIENDWTNFTALNSPENHPARSMQDTFYIEGNDTQGKPLLLRTHTSPMQ 180
Query: 181 IRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240
+RY+++NKPPI+VI GR YR+DSD+THSPMFHQ+EGLWID+NISF+DLKGVYLNF++ F
Sbjct: 181 VRYARMNKPPIRVIAPGRTYRVDSDATHSPMFHQVEGLWIDENISFADLKGVYLNFVKAF 240
Query: 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEK 300
FE+D++Q+RFRPSYFPFTEPSAEIDI F GPLKG WLE+SGAGQV+P V+ NM DPE+
Sbjct: 241 FETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGAGQVHPNVMRNMGFDPEQ 300
Query: 301 YIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
+IGFAFGSGLERLTMLRYGI+DLRLFY+G++ FLKQF
Sbjct: 301 FIGFAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQF 337
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|398833353|ref|ZP_10591487.1| phenylalanyl-tRNA synthetase, alpha subunit [Herbaspirillum sp. YR522] gi|398221710|gb|EJN08112.1| phenylalanyl-tRNA synthetase, alpha subunit [Herbaspirillum sp. YR522] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 218/337 (64%), Positives = 271/337 (80%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEII 60
MN L +L+ QA+ DF+ A ++LENAK+ YLGK G++T+ +K + ++ ERK G II
Sbjct: 1 MNPLDQLVAQAQSDFAAATDAAALENAKAKYLGKTGQITEQMKGLGKLAPEERKTQGAII 60
Query: 61 NSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIF 120
N K I+ L RD L Q++ L ID+TLPGRG+ GG+HP+MR+ +R+E+IF
Sbjct: 61 NVAKEKIETALTARRDELANAQMQSRLNAEAIDVTLPGRGRGTGGIHPVMRSWQRVEEIF 120
Query: 121 YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180
+SIGFD+ DGPEIETD+ NFTALNSP+NHPARSM DTFYI R + LLRTHTSPMQ
Sbjct: 121 HSIGFDVADGPEIETDWTNFTALNSPENHPARSMQDTFYIDGRDSAGKPLLLRTHTSPMQ 180
Query: 181 IRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240
+RY+++NKPPIKVI GR YR+DSD+THSPMFHQ+EGLWI ++ISF+DLKGVYLNF++ F
Sbjct: 181 VRYARMNKPPIKVIAPGRTYRVDSDATHSPMFHQVEGLWIAEDISFADLKGVYLNFVKAF 240
Query: 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEK 300
FE+D++Q+RFRPSYFPFTEPSAEIDI F GPLKG WLE+SGAGQV+P V+ NM LDPE+
Sbjct: 241 FETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGAGQVHPTVVRNMGLDPEQ 300
Query: 301 YIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
YIGFAFGSGLERLTMLRYGI DLRLFY+G++ FLKQF
Sbjct: 301 YIGFAFGSGLERLTMLRYGISDLRLFYEGDLRFLKQF 337
|
Source: Herbaspirillum sp. YR522 Species: Herbaspirillum sp. YR522 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|427402175|ref|ZP_18893247.1| phenylalanyl-tRNA synthetase alpha chain [Massilia timonae CCUG 45783] gi|425718948|gb|EKU81889.1| phenylalanyl-tRNA synthetase alpha chain [Massilia timonae CCUG 45783] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 211/334 (63%), Positives = 271/334 (81%)
Query: 4 LKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSI 63
L++L++ A+ DF+ ++ ++LENAK+ YLGK G++T +K + + +RK G +IN+
Sbjct: 3 LEELVVAARSDFAASLDAAALENAKAKYLGKTGQVTDLMKGLGKLDPEQRKAQGALINAA 62
Query: 64 KINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSI 123
K I++ L R+ L + QL + L ID+TLPGRG++KGG+HP+MRT ER+E+IF SI
Sbjct: 63 KEQIEQALTARREALAEAQLMLRLSAESIDVTLPGRGRSKGGIHPVMRTWERVEQIFRSI 122
Query: 124 GFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRY 183
GFD+ DGPEIETD+ NFTALNSP+NHPARSM DTFYI+ + LLRTHTSPMQ+RY
Sbjct: 123 GFDVADGPEIETDWTNFTALNSPENHPARSMQDTFYIEGNDSTGKPLLLRTHTSPMQVRY 182
Query: 184 SKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFES 243
++ + PPIKVI GR YR+DSD+THSPMFHQ+EGLWI ++ISF+DLKGVYLNF++ FFE+
Sbjct: 183 ARTHTPPIKVIAPGRTYRVDSDATHSPMFHQVEGLWIGEDISFADLKGVYLNFVKAFFET 242
Query: 244 DNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIG 303
D++Q+RFRPSYFPFTEPSAEIDI F GPLKG WLE+SGAGQV+P V+ N LDPEK+IG
Sbjct: 243 DDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGAGQVHPTVVRNFGLDPEKFIG 302
Query: 304 FAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
FAFGSGLERLTMLRYGI+DLRLFY+G++ FLKQF
Sbjct: 303 FAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQF 336
|
Source: Massilia timonae CCUG 45783 Species: Massilia timonae Genus: Massilia Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|237747671|ref|ZP_04578151.1| phenylalanyl-tRNA synthetase subunit alpha [Oxalobacter formigenes OXCC13] gi|229379033|gb|EEO29124.1| phenylalanyl-tRNA synthetase subunit alpha [Oxalobacter formigenes OXCC13] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 217/337 (64%), Positives = 270/337 (80%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEII 60
M+ L++L++ AK DF A +LENAK+ YLGK G +T+ +K + ++ RK G +I
Sbjct: 1 MDSLEQLVLLAKQDFKDAPDAVALENAKARYLGKTGLITEQMKTLGKMAPELRKAQGAVI 60
Query: 61 NSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIF 120
N+ K I+ LN R+ L ++++V L ID+TLPGRG+ KGG+HP+MRT ERIE+IF
Sbjct: 61 NNAKGQIEGSLNARREELANEKMQVRLNAEAIDVTLPGRGRGKGGIHPVMRTWERIERIF 120
Query: 121 YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180
SIGFD+ DGPEIETD+ NFTALNSP+NHPARSM DTFYI+ LLRTHTSPMQ
Sbjct: 121 GSIGFDVADGPEIETDWTNFTALNSPENHPARSMQDTFYIEGNDTEGKPLLLRTHTSPMQ 180
Query: 181 IRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240
+RY++ ++ P+KVI GR YR+DSD+THSPMFHQ+EGLWIDKNISF+DLKGVYLNF+R F
Sbjct: 181 VRYARSHELPVKVIAPGRTYRVDSDATHSPMFHQVEGLWIDKNISFADLKGVYLNFVRAF 240
Query: 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEK 300
FE+DN+Q+RFRPSYFPFTEPSAEIDI F GPLKG WLE+SG+GQV+P VL NM +DP +
Sbjct: 241 FETDNLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGSGQVHPNVLRNMGIDPNE 300
Query: 301 YIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
YIGFAFGSGLERLTMLRYGI+DLRLFY+G++ FLKQF
Sbjct: 301 YIGFAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQF 337
|
Source: Oxalobacter formigenes OXCC13 Species: Oxalobacter formigenes Genus: Oxalobacter Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|237745474|ref|ZP_04575954.1| phenylalanyl-tRNA synthetase subunit alpha [Oxalobacter formigenes HOxBLS] gi|229376825|gb|EEO26916.1| phenylalanyl-tRNA synthetase subunit alpha [Oxalobacter formigenes HOxBLS] | Back alignment and taxonomy information |
|---|
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 217/337 (64%), Positives = 264/337 (78%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEII 60
M+ L++L+ AK DF A SLENAK+ YLGK G +T +K + + RK G II
Sbjct: 1 MDSLEQLISLAKEDFQNAPDAVSLENAKAKYLGKTGLITGQMKMLGKMEPERRKAQGAII 60
Query: 61 NSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIF 120
N+ K I+ LN R L ++L+ L ID+TLPGRG+ KGG+HP+MRT ERIE+IF
Sbjct: 61 NAAKSRIEGALNARRQELANEKLQAKLNAEAIDVTLPGRGRGKGGIHPVMRTWERIERIF 120
Query: 121 YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180
SIGFD+ DGPEIETD+ NFTALNSP+NHPARSM DTFYI+ + LLRTHTSPMQ
Sbjct: 121 GSIGFDVADGPEIETDWTNFTALNSPENHPARSMQDTFYIEGKDSQGKPLLLRTHTSPMQ 180
Query: 181 IRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240
+RY++ + P+KVI GR YR+DSD+THSPMFHQ+EGLWID+NISF+DLKGVYLNF++ F
Sbjct: 181 VRYARSHALPVKVIAPGRTYRVDSDATHSPMFHQVEGLWIDRNISFADLKGVYLNFVQAF 240
Query: 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEK 300
FE++N+Q+RFRPSYFPFTEPSAEIDI F GPLKG WLE+SGAGQV+P VL NM +DPE
Sbjct: 241 FETENLQVRFRPSYFPFTEPSAEIDIAFGTGPLKGRWLEVSGAGQVHPNVLKNMGIDPEN 300
Query: 301 YIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
IGFAFGSGLERLTMLRYGI+DLRLFY+G++ FLKQF
Sbjct: 301 NIGFAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQF 337
|
Source: Oxalobacter formigenes HOxBLS Species: Oxalobacter formigenes Genus: Oxalobacter Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|409405794|ref|ZP_11254256.1| phenylalanyl-tRNA synthetase subunit alpha [Herbaspirillum sp. GW103] gi|386434343|gb|EIJ47168.1| phenylalanyl-tRNA synthetase subunit alpha [Herbaspirillum sp. GW103] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 218/341 (63%), Positives = 270/341 (79%), Gaps = 4/341 (1%)
Query: 1 MNELKKLLIQ----AKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRY 56
MN L +LL Q A+ DF+ A ++LENAK+ YLGK G++T+ +K + ++ ERK
Sbjct: 1 MNPLDQLLGQLVTQAQADFAAAPDAAALENAKAKYLGKTGQITEQMKGLGKLAPEERKVQ 60
Query: 57 GEIINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERI 116
G IIN K I+ L RD L Q++ L ID+TLPGRG+ GG+HP+MR+ +R+
Sbjct: 61 GAIINVAKEQIETALTARRDALAHAQMQARLNAEAIDVTLPGRGRGVGGIHPVMRSWQRV 120
Query: 117 EKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHT 176
E+IF SIGFD+ DGPEIETD+ NFTALNSP+NHPARSM DTFYI+ LLRTHT
Sbjct: 121 EEIFRSIGFDVADGPEIETDWTNFTALNSPENHPARSMQDTFYIEGNDTQGKPLLLRTHT 180
Query: 177 SPMQIRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNF 236
SPMQ+RY+++NKPPIKVI GR YR+DSD+THSPMFHQ+EGLWI ++ISF+DLKGVYLNF
Sbjct: 181 SPMQVRYARMNKPPIKVIAPGRTYRVDSDATHSPMFHQVEGLWIAEDISFADLKGVYLNF 240
Query: 237 IRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNL 296
++ FFE+D++Q+RFRPSYFPFTEPSAEIDI F GPLKG WLE+SGAGQV+P V+ NM L
Sbjct: 241 VKAFFETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGAGQVHPTVVRNMGL 300
Query: 297 DPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
DPE+YIGFAFGSGLERLTMLRYGI+DLRLFY+G++ FLKQF
Sbjct: 301 DPEQYIGFAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQF 341
|
Source: Herbaspirillum sp. GW103 Species: Herbaspirillum sp. GW103 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|415946943|ref|ZP_11556531.1| Phenylalanyl-tRNA synthetase alpha chain [Herbaspirillum frisingense GSF30] gi|407758155|gb|EKF68024.1| Phenylalanyl-tRNA synthetase alpha chain [Herbaspirillum frisingense GSF30] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 218/341 (63%), Positives = 270/341 (79%), Gaps = 4/341 (1%)
Query: 1 MNELKKLLIQ----AKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRY 56
MN L +LL Q A+ DF+ A ++LENAK+ YLGK G++T+ +K + ++ ERK
Sbjct: 1 MNPLDQLLGQLVTQAQADFAAAPDAAALENAKAKYLGKTGQITEQMKGLGKLAPEERKVQ 60
Query: 57 GEIINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERI 116
G IIN K I+ L RD L Q++ L ID+TLPGRG+ GG+HP+MR+ +R+
Sbjct: 61 GAIINVAKEQIENALTARRDALANAQMQARLNAEAIDVTLPGRGRGVGGIHPVMRSWQRV 120
Query: 117 EKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHT 176
E+IF SIGFD+ DGPEIETD+ NFTALNSP+NHPARSM DTFYI+ LLRTHT
Sbjct: 121 EEIFRSIGFDVADGPEIETDWTNFTALNSPENHPARSMQDTFYIEGHDTQGKPLLLRTHT 180
Query: 177 SPMQIRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNF 236
SPMQ+RY+++NKPPIKVI GR YR+DSD+THSPMFHQ+EGLWI ++ISF+DLKGVYLNF
Sbjct: 181 SPMQVRYARMNKPPIKVIAPGRTYRVDSDATHSPMFHQVEGLWIAEDISFADLKGVYLNF 240
Query: 237 IRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNL 296
++ FFE+D++Q+RFRPSYFPFTEPSAEIDI F GPLKG WLE+SGAGQV+P V+ NM L
Sbjct: 241 VKAFFETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGAGQVHPTVVRNMGL 300
Query: 297 DPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
DPE+YIGFAFGSGLERLTMLRYGI+DLRLFY+G++ FLKQF
Sbjct: 301 DPEQYIGFAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQF 341
|
Source: Herbaspirillum frisingense GSF30 Species: Herbaspirillum frisingense Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|445497630|ref|ZP_21464485.1| phenylalanyl-tRNA synthetase alpha chain [Janthinobacterium sp. HH01] gi|444787625|gb|ELX09173.1| phenylalanyl-tRNA synthetase alpha chain [Janthinobacterium sp. HH01] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 210/338 (62%), Positives = 261/338 (77%), Gaps = 1/338 (0%)
Query: 1 MNELKKLLIQAKIDFSTAVS-ISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEI 59
M+ L++L+ A DF ++LENAK+ YLGK G++T+ +K + + RK G +
Sbjct: 1 MDSLEQLVASAVQDFDAVKDDAAALENAKAKYLGKTGQITELMKGLGKLDPEARKAQGAL 60
Query: 60 INSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKI 119
IN+ K I+ L RD L Q++ L ID++LPGRG+ GG+HP+MRT ER+E+I
Sbjct: 61 INAAKGQIEAALTARRDALADAQMQTRLNAEAIDVSLPGRGRAGGGIHPVMRTWERVEEI 120
Query: 120 FYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPM 179
F SIGFD+ DGPEIE D+ NFTALNSP+NHPARSM DTFYI+ LLRTHTSPM
Sbjct: 121 FRSIGFDVADGPEIENDWTNFTALNSPENHPARSMQDTFYIEGNDSEGKPLLLRTHTSPM 180
Query: 180 QIRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRV 239
Q+RY++ + PPIKVI GR YR+DSD+THSPMFHQ+EGLWI +NISF+DLKGVYLNF++
Sbjct: 181 QVRYARSHTPPIKVIAPGRTYRVDSDATHSPMFHQVEGLWIAENISFADLKGVYLNFVKA 240
Query: 240 FFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPE 299
FFE+D++Q+RFRPSYFPFTEPSAEIDI F GPLKG WLEISG+GQV+P V+ N LDPE
Sbjct: 241 FFETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEISGSGQVHPSVVRNFGLDPE 300
Query: 300 KYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
KYIGFAFGSGLERLTMLRYG+ DLRLFY+G++ FLKQF
Sbjct: 301 KYIGFAFGSGLERLTMLRYGVSDLRLFYEGDLRFLKQF 338
|
Source: Janthinobacterium sp. HH01 Species: Janthinobacterium sp. HH01 Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 338 | ||||||
| TIGR_CMR|SO_2085 | 327 | SO_2085 "phenylalanyl-tRNA syn | 0.964 | 0.996 | 0.486 | 3e-85 | |
| TIGR_CMR|CPS_2996 | 331 | CPS_2996 "phenylalanyl-tRNA sy | 0.955 | 0.975 | 0.458 | 8.2e-83 | |
| UNIPROTKB|Q9KSN7 | 327 | pheS "Phenylalanine--tRNA liga | 0.964 | 0.996 | 0.465 | 2.8e-82 | |
| TIGR_CMR|VC_1219 | 327 | VC_1219 "phenylalanyl-tRNA syn | 0.964 | 0.996 | 0.465 | 2.8e-82 | |
| UNIPROTKB|P08312 | 327 | pheS "phenylalanyl-tRNA synthe | 0.964 | 0.996 | 0.483 | 9.4e-82 | |
| TIGR_CMR|CBU_1322 | 328 | CBU_1322 "phenylalanyl-tRNA sy | 0.964 | 0.993 | 0.485 | 5.4e-79 | |
| TIGR_CMR|ECH_0196 | 346 | ECH_0196 "phenylalanyl-tRNA sy | 0.976 | 0.953 | 0.466 | 6.3e-76 | |
| TIGR_CMR|GSU_1519 | 339 | GSU_1519 "phenylalanyl-tRNA sy | 0.976 | 0.973 | 0.443 | 2.5e-74 | |
| TIGR_CMR|CHY_1571 | 340 | CHY_1571 "phenylalanyl-tRNA sy | 0.917 | 0.911 | 0.481 | 6.1e-71 | |
| TIGR_CMR|DET_0365 | 346 | DET_0365 "phenylalanyl-tRNA sy | 0.988 | 0.965 | 0.429 | 2.6e-70 |
| TIGR_CMR|SO_2085 SO_2085 "phenylalanyl-tRNA synthetase, alpha subunit" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
Identities = 164/337 (48%), Positives = 230/337 (68%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEXX 60
M +L +++ QA + A + +L++ + YLGK GK+T +K + ++S E+ +G+
Sbjct: 1 MQQLTEIVEQALVIIDQASDLKALDDIRVDYLGKKGKITDMMKMMGSLSPEEKPAFGQAV 60
Query: 61 XXXXXXXXXXXXXHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIF 120
D LK +L+ L KID+TLPGR GGLHP+ RT+ERIE F
Sbjct: 61 NDAKQAIQQKLTERIDGLKSAELEAKLIAEKIDVTLPGRTIEIGGLHPVTRTIERIETFF 120
Query: 121 YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180
+GF + GPEIE DF+NF ALN ++HPAR+ HDTFY N K +LRT TS +Q
Sbjct: 121 GELGFSVKQGPEIEDDFHNFDALNISEHHPARADHDTFYF------NPKLMLRTQTSGVQ 174
Query: 181 IRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240
IR + KPP+++I+ GRVYR D D TH+PMFHQ+EGL +D++++F++LKGV +F+R F
Sbjct: 175 IRTMETEKPPLRIISPGRVYRNDYDQTHTPMFHQVEGLLVDEHVNFAELKGVLHDFLRNF 234
Query: 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEK 300
FE D +Q+RFRPSYFPFTEPSAE+D++ ++G WLE+ G G V+P VL ++ +DPEK
Sbjct: 235 FEED-LQVRFRPSYFPFTEPSAEVDVMGKNG----KWLEVLGCGMVHPNVLRSVGIDPEK 289
Query: 301 YIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
Y GFAFG G+ERLTMLRYG++DLR F++ ++ FLKQF
Sbjct: 290 YSGFAFGMGVERLTMLRYGVNDLRAFFENDLRFLKQF 326
|
|
| TIGR_CMR|CPS_2996 CPS_2996 "phenylalanyl-tRNA synthetase, alpha subunit" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
Identities = 153/334 (45%), Positives = 226/334 (67%)
Query: 4 LKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEXXXXX 63
+ ++ QA++ + A ++L+ + +LGK G T+ +K + + E+ + G+
Sbjct: 8 IDSIVAQAEVAIAQASDPTALDQVRVNFLGKKGLFTEQMKGLGKLPKEEKPKMGQVINIA 67
Query: 64 XXXXXXXXXXHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSI 123
++L+ +++K L ID+TLPGRG GGLHP+ RT+ RIE F +
Sbjct: 68 KQAVQKLLTERGELLRAQEIKEKLAAESIDVTLPGRGTQIGGLHPVTRTIARIESFFGDL 127
Query: 124 GFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRY 183
GF++ DGPE+E D++NF ALN P++HPAR HDTFY N K +LRT TS +QIR
Sbjct: 128 GFEVKDGPEVEDDYHNFDALNIPEHHPARQDHDTFYF------NPKLVLRTQTSGVQIRT 181
Query: 184 SKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFES 243
++ +PP+++I+ G+VYR D D TH+PMFHQ+EGL +DK++SF+ LKG+ +F+ FFE
Sbjct: 182 MEVEQPPLRIISPGKVYRNDYDQTHTPMFHQVEGLMVDKDVSFTHLKGILHDFLHHFFEE 241
Query: 244 DNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIG 303
+ ++IRFRPSYFPFTEPSAE+DI+ ++G WLE+ G G V+P VL ++ +DPE Y G
Sbjct: 242 E-VEIRFRPSYFPFTEPSAEVDIMGKNG----KWLEVLGCGMVHPNVLRSVGIDPEVYTG 296
Query: 304 FAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
FAFG G+ERLTMLRYG++DLR F++ ++ FLKQF
Sbjct: 297 FAFGMGVERLTMLRYGVNDLRAFFENDLRFLKQF 330
|
|
| UNIPROTKB|Q9KSN7 pheS "Phenylalanine--tRNA ligase alpha subunit" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
Identities = 157/337 (46%), Positives = 223/337 (66%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEXX 60
M L++++ A + A S+ +L+ + YLGK G+LT ++++ + ER+ G+
Sbjct: 1 MQHLQEIIANATSAINAAESLVALDEVRVQYLGKKGELTVQLQSLGKLPPEERRTAGQEI 60
Query: 61 XXXXXXXXXXXXXHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIF 120
+D L+ +L+ L ID+TLPGR GGLHP+ RT+ERIE F
Sbjct: 61 NVAKEAVQKALAERKDALQSAELEAKLAAETIDVTLPGRRIENGGLHPVTRTIERIESFF 120
Query: 121 YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180
+GF + GPEIE DF+NF ALN +HPAR+ HDTF+ N K +LRTHTS +Q
Sbjct: 121 GELGFTVESGPEIEDDFHNFDALNIAADHPARTDHDTFFF------NPKLMLRTHTSGVQ 174
Query: 181 IRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240
IR + +PP++ I GRVYR D D TH+PMFHQ+EG+ +D+N++F+ LKG+ +F+ F
Sbjct: 175 IRTLEERQPPLRFIAPGRVYRNDYDQTHTPMFHQVEGMLVDENVNFAQLKGILHDFLCNF 234
Query: 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEK 300
FE D +++RFRPSYFPFTEPSAE+D+ ++G WLE+ G G V+P VL ++ +DPEK
Sbjct: 235 FEED-LEVRFRPSYFPFTEPSAEVDVKGKNG----KWLEVLGCGMVHPNVLRSVGIDPEK 289
Query: 301 YIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
Y GFAFG G+ERLTMLRYG++DLR F++ ++ FLKQF
Sbjct: 290 YSGFAFGMGVERLTMLRYGVNDLRAFFENDLRFLKQF 326
|
|
| TIGR_CMR|VC_1219 VC_1219 "phenylalanyl-tRNA synthetase, alpha chain" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
Identities = 157/337 (46%), Positives = 223/337 (66%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEXX 60
M L++++ A + A S+ +L+ + YLGK G+LT ++++ + ER+ G+
Sbjct: 1 MQHLQEIIANATSAINAAESLVALDEVRVQYLGKKGELTVQLQSLGKLPPEERRTAGQEI 60
Query: 61 XXXXXXXXXXXXXHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIF 120
+D L+ +L+ L ID+TLPGR GGLHP+ RT+ERIE F
Sbjct: 61 NVAKEAVQKALAERKDALQSAELEAKLAAETIDVTLPGRRIENGGLHPVTRTIERIESFF 120
Query: 121 YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180
+GF + GPEIE DF+NF ALN +HPAR+ HDTF+ N K +LRTHTS +Q
Sbjct: 121 GELGFTVESGPEIEDDFHNFDALNIAADHPARTDHDTFFF------NPKLMLRTHTSGVQ 174
Query: 181 IRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240
IR + +PP++ I GRVYR D D TH+PMFHQ+EG+ +D+N++F+ LKG+ +F+ F
Sbjct: 175 IRTLEERQPPLRFIAPGRVYRNDYDQTHTPMFHQVEGMLVDENVNFAQLKGILHDFLCNF 234
Query: 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEK 300
FE D +++RFRPSYFPFTEPSAE+D+ ++G WLE+ G G V+P VL ++ +DPEK
Sbjct: 235 FEED-LEVRFRPSYFPFTEPSAEVDVKGKNG----KWLEVLGCGMVHPNVLRSVGIDPEK 289
Query: 301 YIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
Y GFAFG G+ERLTMLRYG++DLR F++ ++ FLKQF
Sbjct: 290 YSGFAFGMGVERLTMLRYGVNDLRAFFENDLRFLKQF 326
|
|
| UNIPROTKB|P08312 pheS "phenylalanyl-tRNA synthetase alpha-chain" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
Identities = 163/337 (48%), Positives = 217/337 (64%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEXX 60
M+ L +L+ AK S A +++L+N + YLGK G LT + ++ + ER G
Sbjct: 1 MSHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTTLRELPPEERPAAGAVI 60
Query: 61 XXXXXXXXXXXXXHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIF 120
+ L+ L L ID++LPGR GGLHP+ RT++RIE F
Sbjct: 61 NEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRIENGGLHPVTRTIDRIESFF 120
Query: 121 YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180
+GF + GPEIE D++NF ALN P +HPAR+ HDTF+ + LLRT TS +Q
Sbjct: 121 GELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF------DTTRLLRTQTSGVQ 174
Query: 181 IRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240
IR K +PPI++I GRVYR D D TH+PMFHQ+EGL +D NISF++LKG +F+R F
Sbjct: 175 IRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNF 234
Query: 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEK 300
FE D +QIRFRPSYFPFTEPSAE+D++ ++G WLE+ G G V+P VL N+ +DPE
Sbjct: 235 FEED-LQIRFRPSYFPFTEPSAEVDVMGKNG----KWLEVLGCGMVHPNVLRNVGIDPEV 289
Query: 301 YIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
Y GFAFG G+ERLTMLRYG+ DLR F++ ++ FLKQF
Sbjct: 290 YSGFAFGMGMERLTMLRYGVTDLRSFFENDLRFLKQF 326
|
|
| TIGR_CMR|CBU_1322 CBU_1322 "phenylalanyl-tRNA synthetase, alpha subunit" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 163/336 (48%), Positives = 218/336 (64%)
Query: 2 NELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEXXX 61
N+L LL AK + A S LE + YLGK GKLT+ +K++ + ++R G+
Sbjct: 3 NQLNALLQSAKKSVADAQSEIVLEEIRVDYLGKKGKLTELLKSVGQMPADQRPLLGKAVN 62
Query: 62 XXXXXXXXXXXXHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFY 121
L++K L+ L K+DITL GR + G +HPI R ER+ ++F
Sbjct: 63 EIKREIQQLLNAKSTQLREKSLQEKLNKEKVDITLRGRYDHLGAIHPISRVSERVSQLFS 122
Query: 122 SIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI 181
+GF I +GPEIE ++ NF ALN P +HPAR+M DTFY S +K LLRTHTSP+QI
Sbjct: 123 MLGFQIAEGPEIENEYYNFEALNIPADHPARTMADTFYF-----SGDK-LLRTHTSPVQI 176
Query: 182 RYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241
R + PI++I GRVYR D D TH+PMFHQ+EGL IDK +F++LKG+ F+ FF
Sbjct: 177 REMEKQGVPIRLIALGRVYRRDLDQTHTPMFHQVEGLVIDKRSTFANLKGLLQQFLNCFF 236
Query: 242 ESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKY 301
E D +++RFRPSYFPFTEPSAE+DI +Q P WLE+ G G V+P VL N+N+DP++Y
Sbjct: 237 EKD-VRLRFRPSYFPFTEPSAEVDI-YQ--PRTDKWLEVLGCGMVHPNVLRNLNIDPDEY 292
Query: 302 IGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
GFAFG GL+RL MLRY + DLRLF++ ++ FL QF
Sbjct: 293 SGFAFGIGLDRLAMLRYEVTDLRLFFENDLRFLGQF 328
|
|
| TIGR_CMR|ECH_0196 ECH_0196 "phenylalanyl-tRNA synthetase, alpha subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 158/339 (46%), Positives = 217/339 (64%)
Query: 2 NELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNIS-INERKRYGEXX 60
+ + L +A ++ S+ LE+ K YY GK+G +T +K+I IS I ERK G
Sbjct: 4 SNIYNLQAEATNKILSSSSLEELESIKLYYFGKSGTITACLKSIATISNIEERKSVGSSV 63
Query: 61 XXXXXXXXXXXXXHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIF 120
++ L K Q+ L +++DI+LP R K LHPI +TL + IF
Sbjct: 64 NAICAELKSLINSQKEKLHKIQINAQLMQDRVDISLPVRPKQIAKLHPISKTLHEVRHIF 123
Query: 121 YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180
S+GF ++DGPE+E +F+ F ALN+ KNHPAR +DTFY+K V+ + +LRTHTS +Q
Sbjct: 124 SSLGFKLSDGPELEDEFHVFDALNTHKNHPAREENDTFYLKT-LVNQKRVVLRTHTSSVQ 182
Query: 181 IRYSKINKP--PIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIR 238
IR + NK PIK+I G+VYR D D+THSPMFHQIEGL+IDKN++ LK F++
Sbjct: 183 IRVMQANKGNYPIKIIAPGKVYRNDWDATHSPMFHQIEGLYIDKNVNMGHLKYCIHYFLK 242
Query: 239 VFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDP 298
FF +NIQIRFR SYFPFTEPSAE+DI + G + +W+EI G G V+ VL N+N+DP
Sbjct: 243 KFF-GENIQIRFRNSYFPFTEPSAEVDI--KCG--EKDWIEILGCGMVHRNVLTNVNIDP 297
Query: 299 EKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
++Y GFAFG G+ER+ ML+Y I DLR FY + +L +
Sbjct: 298 DQYSGFAFGIGIERVAMLKYNISDLRKFYSNKLQWLNHY 336
|
|
| TIGR_CMR|GSU_1519 GSU_1519 "phenylalanyl-tRNA synthetase, alpha subunit" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
Identities = 153/345 (44%), Positives = 212/345 (61%)
Query: 1 MNE-LKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEX 59
M E L +L+ A + + A S +L+ + YLGK G+LT +K + ++S ER R G+
Sbjct: 1 MKETLDQLMQSALAEIAGAASEDALQELRVRYLGKKGELTAVMKGLGSLSPEERPRMGQM 60
Query: 60 XXXXXXXXXXXXXXHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKI 119
++ K L+ ++D+TLPGR G HPI +E I I
Sbjct: 61 VNTVKDRLETTLEETLQRVRAAAKKERLERERLDVTLPGRTSPLGTKHPISLVIEEISDI 120
Query: 120 FYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPM 179
F +GF + +GPE+E DF NF ALN PK+HPAR M DTF++ ++ LLRTHTSP+
Sbjct: 121 FAGLGFQVAEGPEVELDFYNFEALNFPKDHPARDMQDTFFV------DDDILLRTHTSPV 174
Query: 180 QIRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRV 239
Q+R + PP+++I+ G VYR DSD+THSPMFHQIEG +DK ++F DLKG+ NF+
Sbjct: 175 QVRTMLKHAPPVRIISPGTVYRCDSDATHSPMFHQIEGFMVDKGVTFGDLKGILTNFVNQ 234
Query: 240 FFESDNIQIRFRPSYFPFTEPSAEIDI--VFQDGP-----LKGNWLEISGAGQVNPKVLC 292
FF + +R RPS+FPFTEPSAE+DI V G + WLEI GAG ++P+V
Sbjct: 235 FFGAGT-GVRLRPSFFPFTEPSAEVDIACVMCKGQGCRVCKQSGWLEILGAGMIDPEVYR 293
Query: 293 NMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
++ DPE GFAFG G+ER+ ML+YGI DLRLF+ ++ FL+QF
Sbjct: 294 HVGYDPESISGFAFGMGIERVAMLKYGIGDLRLFFDNDVRFLQQF 338
|
|
| TIGR_CMR|CHY_1571 CHY_1571 "phenylalanyl-tRNA synthetase, alpha subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
Identities = 157/326 (48%), Positives = 198/326 (60%)
Query: 21 ISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEXXXXXXXXXXXXXXXHRDILKK 80
++ L+ K +LGK G++T +KN+KN+ R G L +
Sbjct: 22 LNELQTVKVKFLGKKGEVTLALKNLKNLPPELRPEAGHKINTVKKLIEEDLEKREQELLQ 81
Query: 81 KQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNF 140
K L+ L ID+TLPG G LHP+ + RI +IF S+GF + GPEIE D+ NF
Sbjct: 82 KALEEKLSKEAIDVTLPGYSLKLGKLHPLTQVQHRIVEIFTSMGFSVATGPEIEKDYYNF 141
Query: 141 TALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINKP--PIKVITSGR 198
ALN PK+HPAR M D+FYI + LLRTHTSP+Q+R + P PI++I+ G+
Sbjct: 142 EALNLPKDHPARDMQDSFYI------TEEVLLRTHTSPVQVRVMEKYAPNLPIRIISPGK 195
Query: 199 VYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFT 258
VYR D D+THSPMF Q EGL +DKNI FSDLKGV L FI+ F ++R RPSYFPFT
Sbjct: 196 VYRRDDDATHSPMFAQCEGLAVDKNIRFSDLKGVLLTFIKELF-GPKTKMRLRPSYFPFT 254
Query: 259 EPSAEIDI--VFQDG----PLKGN-WLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLE 311
EPSAE+DI V G KG+ WLEI G+G V+P+VL D GFAFG GLE
Sbjct: 255 EPSAEVDISCVICGGIGCKVCKGSGWLEILGSGMVHPRVLEMAGYDSSVVTGFAFGMGLE 314
Query: 312 RLTMLRYGIDDLRLFYKGNINFLKQF 337
R+ ML YGIDDLRLFY +I FL+ F
Sbjct: 315 RIAMLLYGIDDLRLFYDNDIRFLQMF 340
|
|
| TIGR_CMR|DET_0365 DET_0365 "phenylalanyl-tRNA synthetase, alpha subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 150/349 (42%), Positives = 209/349 (59%)
Query: 1 MNELKKL--LIQAKI-DFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYG 57
M E+K + + Q+ + + + LE + YLGK LT ++N+ ++ I ERK G
Sbjct: 1 MEEIKNITEITQSALAELEAITELKDLEAWRVRYLGKKSLLTGALRNLASLPIEERKAAG 60
Query: 58 EXXXXXXXXXXXXXXXHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIE 117
+ K+KQ + ++ +DITLPGR G +HP+ + +
Sbjct: 61 AAANEAKAALEAAFLEKEQLSKEKQF--ASRSEGLDITLPGRPWPIGRIHPLTQVTNEVT 118
Query: 118 KIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNN-KPLLRTHT 176
IF ++GF + +GPEIE D++NF ALN P++HPAR TF+I LLRTHT
Sbjct: 119 AIFSTLGFSVLEGPEIEDDYHNFEALNIPEDHPARENMQTFWIDRPNEDGRLDTLLRTHT 178
Query: 177 SPMQIRYSKINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLN 235
SPMQ+RY + NKPPI+++ G+VYR ++ D+TH PMF Q+EGL +D+ IS + LKG +
Sbjct: 179 SPMQVRYMEKNKPPIRIVVPGKVYRYEATDATHIPMFTQVEGLVVDEGISMAHLKGTLME 238
Query: 236 FIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLK------GN-WLEISGAGQVNP 288
F R FF + N ++RFR YFPF EP E+ + G K G+ WLEI GAG V+P
Sbjct: 239 FCRRFFGA-NRKVRFRCDYFPFVEPGVEVAVSCTCGGKKECSVCHGSGWLEILGAGMVHP 297
Query: 289 KVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
+VL + +D EKY GFAFG GLERL MLRYGIDD+RLFY + FL+QF
Sbjct: 298 RVLERVGIDSEKYTGFAFGMGLERLPMLRYGIDDIRLFYSNDTRFLRQF 346
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B1XYZ7 | SYFA_LEPCP | 6, ., 1, ., 1, ., 2, 0 | 0.5462 | 0.9970 | 0.9711 | yes | N/A |
| Q21YS9 | SYFA_RHOFD | 6, ., 1, ., 1, ., 2, 0 | 0.5322 | 0.9940 | 0.9411 | yes | N/A |
| Q9JR76 | SYFA_NEIMA | 6, ., 1, ., 1, ., 2, 0 | 0.5162 | 0.9704 | 0.9939 | yes | N/A |
| A2SH03 | SYFA_METPP | 6, ., 1, ., 1, ., 2, 0 | 0.5485 | 0.9792 | 0.9594 | yes | N/A |
| Q2SVE2 | SYFA_BURTA | 6, ., 1, ., 1, ., 2, 0 | 0.5922 | 0.9940 | 0.9970 | yes | N/A |
| A3NUI8 | SYFA_BURP0 | 6, ., 1, ., 1, ., 2, 0 | 0.5922 | 0.9940 | 0.9970 | yes | N/A |
| A4JDU8 | SYFA_BURVG | 6, ., 1, ., 1, ., 2, 0 | 0.5892 | 0.9940 | 0.9970 | yes | N/A |
| B4E7I9 | SYFA_BURCJ | 6, ., 1, ., 1, ., 2, 0 | 0.5892 | 0.9940 | 0.9970 | yes | N/A |
| B2SZF8 | SYFA_BURPP | 6, ., 1, ., 1, ., 2, 0 | 0.5803 | 0.9940 | 0.9970 | yes | N/A |
| A1W8I2 | SYFA_ACISJ | 6, ., 1, ., 1, ., 2, 0 | 0.5542 | 0.9940 | 0.96 | yes | N/A |
| Q5P7X9 | SYFA_AROAE | 6, ., 1, ., 1, ., 2, 0 | 0.5433 | 0.9852 | 0.9708 | yes | N/A |
| Q48JR9 | SYFA_PSE14 | 6, ., 1, ., 1, ., 2, 0 | 0.5116 | 0.9763 | 0.9763 | yes | N/A |
| Q7W7C7 | SYFA_BORPA | 6, ., 1, ., 1, ., 2, 0 | 0.5891 | 0.9792 | 0.9511 | yes | N/A |
| C1DF46 | SYFA_AZOVD | 6, ., 1, ., 1, ., 2, 0 | 0.4970 | 0.9763 | 0.9763 | yes | N/A |
| Q1LP76 | SYFA_RALME | 6, ., 1, ., 1, ., 2, 0 | 0.5925 | 0.9230 | 0.9096 | yes | N/A |
| B9MHY2 | SYFA_ACIET | 6, ., 1, ., 1, ., 2, 0 | 0.5542 | 0.9940 | 0.96 | yes | N/A |
| Q7NYC2 | SYFA_CHRVO | 6, ., 1, ., 1, ., 2, 0 | 0.5192 | 0.9674 | 0.9969 | yes | N/A |
| A4G615 | SYFA_HERAR | 6, ., 1, ., 1, ., 2, 0 | 0.6468 | 0.9970 | 0.9970 | yes | N/A |
| C3JZN3 | SYFA_PSEFS | 6, ., 1, ., 1, ., 2, 0 | 0.5116 | 0.9763 | 0.9763 | yes | N/A |
| Q3JT08 | SYFA_BURP1 | 6, ., 1, ., 1, ., 2, 0 | 0.5892 | 0.9940 | 0.9970 | yes | N/A |
| Q883H8 | SYFA_PSESM | 6, ., 1, ., 1, ., 2, 0 | 0.5116 | 0.9763 | 0.9763 | yes | N/A |
| A1K4E5 | SYFA_AZOSB | 6, ., 1, ., 1, ., 2, 0 | 0.5491 | 0.9852 | 0.9708 | yes | N/A |
| Q5F9U0 | SYFA_NEIG1 | 6, ., 1, ., 1, ., 2, 0 | 0.5207 | 0.9674 | 0.9939 | yes | N/A |
| Q7VVR4 | SYFA_BORPE | 6, ., 1, ., 1, ., 2, 0 | 0.5921 | 0.9792 | 0.9511 | yes | N/A |
| A6SY34 | SYFA_JANMA | 6, ., 1, ., 1, ., 2, 0 | 0.6468 | 0.9970 | 0.9970 | yes | N/A |
| Q0KBY9 | SYFA_CUPNH | 6, ., 1, ., 1, ., 2, 0 | 0.5987 | 0.9230 | 0.9096 | yes | N/A |
| B3PL12 | SYFA_CELJU | 6, ., 1, ., 1, ., 2, 0 | 0.5029 | 0.9763 | 0.9792 | yes | N/A |
| Q62KI6 | SYFA_BURMA | 6, ., 1, ., 1, ., 2, 0 | 0.5892 | 0.9940 | 0.9970 | yes | N/A |
| Q9K092 | SYFA_NEIMB | 6, ., 1, ., 1, ., 2, 0 | 0.5162 | 0.9704 | 0.9939 | yes | N/A |
| C1DDA2 | SYFA_LARHH | 6, ., 1, ., 1, ., 2, 0 | 0.5133 | 0.9644 | 0.9969 | yes | N/A |
| Q3KEX8 | SYFA_PSEPF | 6, ., 1, ., 1, ., 2, 0 | 0.5087 | 0.9763 | 0.9763 | yes | N/A |
| Q8XZ25 | SYFA_RALSO | 6, ., 1, ., 1, ., 2, 0 | 0.5768 | 0.9822 | 0.9651 | yes | N/A |
| Q4ZUG3 | SYFA_PSEU2 | 6, ., 1, ., 1, ., 2, 0 | 0.5116 | 0.9763 | 0.9763 | yes | N/A |
| Q47CM8 | SYFA_DECAR | 6, ., 1, ., 1, ., 2, 0 | 0.5273 | 0.9970 | 0.9683 | yes | N/A |
| Q3SK30 | SYFA_THIDA | 6, ., 1, ., 1, ., 2, 0 | 0.5087 | 0.9940 | 0.9767 | yes | N/A |
| A1TR35 | SYFA_ACIAC | 6, ., 1, ., 1, ., 2, 0 | 0.5657 | 0.9940 | 0.96 | yes | N/A |
| Q82VV5 | SYFA_NITEU | 6, ., 1, ., 1, ., 2, 0 | 0.5261 | 0.9792 | 0.9594 | yes | N/A |
| Q39H51 | SYFA_BURS3 | 6, ., 1, ., 1, ., 2, 0 | 0.5892 | 0.9940 | 0.9739 | yes | N/A |
| Q472N4 | SYFA_CUPPJ | 6, ., 1, ., 1, ., 2, 0 | 0.5987 | 0.9230 | 0.8813 | yes | N/A |
| Q7WKR5 | SYFA_BORBR | 6, ., 1, ., 1, ., 2, 0 | 0.5921 | 0.9792 | 0.9511 | yes | N/A |
| B2UGJ4 | SYFA_RALPJ | 6, ., 1, ., 1, ., 2, 0 | 0.5710 | 0.9822 | 0.9651 | yes | N/A |
| B3R4J5 | SYFA_CUPTR | 6, ., 1, ., 1, ., 2, 0 | 0.5925 | 0.9230 | 0.9096 | yes | N/A |
| A3MJU2 | SYFA_BURM7 | 6, ., 1, ., 1, ., 2, 0 | 0.5892 | 0.9940 | 0.9970 | yes | N/A |
| Q2YBS2 | SYFA_NITMU | 6, ., 1, ., 1, ., 2, 0 | 0.5131 | 0.9970 | 0.9796 | yes | N/A |
| A9C3D0 | SYFA_DELAS | 6, ., 1, ., 1, ., 2, 0 | 0.5612 | 0.9911 | 0.9571 | yes | N/A |
| Q63TM6 | SYFA_BURPS | 6, ., 1, ., 1, ., 2, 0 | 0.5892 | 0.9940 | 0.9970 | yes | N/A |
| A1WMG9 | SYFA_VEREI | 6, ., 1, ., 1, ., 2, 0 | 0.5628 | 0.9940 | 0.96 | yes | N/A |
| Q3JBZ8 | SYFA_NITOC | 6, ., 1, ., 1, ., 2, 0 | 0.4796 | 0.9792 | 0.9403 | yes | N/A |
| Q1GZS1 | SYFA_METFK | 6, ., 1, ., 1, ., 2, 0 | 0.5177 | 0.9674 | 1.0 | yes | N/A |
| C5CUU6 | SYFA_VARPS | 6, ., 1, ., 1, ., 2, 0 | 0.5266 | 0.9970 | 0.9413 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.20 | 0.991 |
| 3rd Layer | 6.1.1 | 0.976 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 338 | |||
| PRK00488 | 339 | PRK00488, pheS, phenylalanyl-tRNA synthetase subun | 0.0 | |
| COG0016 | 335 | COG0016, PheS, Phenylalanyl-tRNA synthetase alpha | 1e-144 | |
| pfam01409 | 245 | pfam01409, tRNA-synt_2d, tRNA synthetases class II | 1e-121 | |
| TIGR00468 | 293 | TIGR00468, pheS, phenylalanyl-tRNA synthetase, alp | 1e-113 | |
| cd00496 | 218 | cd00496, PheRS_alpha_core, Phenylalanyl-tRNA synth | 1e-111 | |
| PRK04172 | 489 | PRK04172, pheS, phenylalanyl-tRNA synthetase subun | 1e-61 | |
| PLN02853 | 492 | PLN02853, PLN02853, Probable phenylalanyl-tRNA syn | 3e-41 | |
| PTZ00326 | 494 | PTZ00326, PTZ00326, phenylalanyl-tRNA synthetase a | 6e-41 | |
| PLN02788 | 402 | PLN02788, PLN02788, phenylalanine-tRNA synthetase | 9e-40 | |
| TIGR00469 | 460 | TIGR00469, pheS_mito, phenylalanyl-tRNA synthetase | 8e-18 | |
| TIGR00469 | 460 | TIGR00469, pheS_mito, phenylalanyl-tRNA synthetase | 3e-14 | |
| pfam02912 | 73 | pfam02912, Phe_tRNA-synt_N, Aminoacyl tRNA synthet | 3e-11 | |
| TIGR00470 | 533 | TIGR00470, sepS, O-phosphoserine--tRNA ligase | 1e-08 | |
| COG2024 | 536 | COG2024, COG2024, Phenylalanyl-tRNA synthetase alp | 9e-08 | |
| PRK06253 | 529 | PRK06253, PRK06253, O-phosphoseryl-tRNA synthetase | 1e-04 |
| >gnl|CDD|234780 PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Score = 517 bits (1335), Expect = 0.0
Identities = 179/345 (51%), Positives = 234/345 (67%), Gaps = 15/345 (4%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEII 60
M +L++L+ +A + A + +LE + YLGK G+LT+ +K + + ERK G +I
Sbjct: 2 MEDLEELVEEALAAIAAASDLEALEALRVKYLGKKGELTELLKGLGKLPPEERKEAGALI 61
Query: 61 NSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIF 120
N +K I+ L ++ L+ L L ID+TLPGR G LHPI +T+E IE IF
Sbjct: 62 NELKQAIEAALEERKEELEAAALNARLAAETIDVTLPGRRIELGSLHPITQTIEEIEDIF 121
Query: 121 YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180
+GF++ +GPEIETD+ NF ALN PK+HPAR M DTFYI + LLRTHTSP+Q
Sbjct: 122 VGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYIDDGL------LLRTHTSPVQ 175
Query: 181 IRYSKINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRV 239
IR + KPPI++I GRVYR DS D+THSPMFHQ+EGL +DKNISF+DLKG +F++
Sbjct: 176 IRTMEKQKPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKA 235
Query: 240 FFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGN-------WLEISGAGQVNPKVLC 292
FF D ++IRFRPSYFPFTEPSAE+D+ KG WLEI G G V+P VL
Sbjct: 236 FFGED-VKIRFRPSYFPFTEPSAEVDVSCFKCGGKGCRVCKGTGWLEILGCGMVHPNVLR 294
Query: 293 NMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
N+ +DPE+Y GFAFG G+ERL ML+YGIDD+RLFY+ ++ FLKQF
Sbjct: 295 NVGIDPEEYSGFAFGMGIERLAMLKYGIDDIRLFYENDLRFLKQF 339
|
Length = 339 |
| >gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 410 bits (1055), Expect = e-144
Identities = 170/340 (50%), Positives = 217/340 (63%), Gaps = 11/340 (3%)
Query: 1 MNELKKLLIQAKIDFSTAVS-ISSLENAKSYYLGKNGKLTQYIKNIKNIS-INERKRYGE 58
M L +L + A + +LE K YLGK G LT +K + +S + ERK G
Sbjct: 3 MIALGRLAKKGIAAIELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVGA 62
Query: 59 IINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEK 118
+IN +K ++ + L+ L L KID+TLPGR G LHP+ +T+E IE
Sbjct: 63 LINELKKEVEDAITELTPELEAAGLWERLAFEKIDVTLPGRRIYPGSLHPLTQTIEEIED 122
Query: 119 IFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSP 178
IF +GF +GPEIETDF NF ALN P++HPAR M DTFY+K+ K LLRTHTSP
Sbjct: 123 IFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKD---DREKLLLRTHTSP 179
Query: 179 MQIRY-SKINKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNF 236
+Q R ++ K PIK+ + GRVYR D D+THSP FHQIEGL +DKNISF+DLKG F
Sbjct: 180 VQARTLAENAKIPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEF 239
Query: 237 IRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNL 296
+ FF D ++RFRPSYFPFTEPSAE+D+ P G WLEI G G V+P VL + +
Sbjct: 240 AKKFFGEDV-KVRFRPSYFPFTEPSAEVDV---YCPGCGGWLEILGCGMVHPNVLEAVGI 295
Query: 297 DPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQ 336
DPE+Y GFAFG GLERL ML+YGI D+R Y+ ++ FL+Q
Sbjct: 296 DPEEYSGFAFGLGLERLAMLKYGIPDIRDLYENDLRFLRQ 335
|
Length = 335 |
| >gnl|CDD|216483 pfam01409, tRNA-synt_2d, tRNA synthetases class II core domain (F) | Back alignment and domain information |
|---|
Score = 347 bits (893), Expect = e-121
Identities = 138/250 (55%), Positives = 180/250 (72%), Gaps = 8/250 (3%)
Query: 91 KIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHP 150
D+TLPGR GGLHP+ R LE I IF S+GF+ +GPE+E+DF NF ALN P++HP
Sbjct: 1 PYDVTLPGRRIEPGGLHPLTRVLEEIRDIFLSMGFEEVEGPEVESDFYNFDALNIPQDHP 60
Query: 151 ARSMHDTFYIKNRYVSNNKP-LLRTHTSPMQIRY-SKINKPPIKVITSGRVYRIDS-DST 207
AR M DTFY+K ++ LLRTHT+P+Q R +K NKPPIK+ + GRV+R D D+T
Sbjct: 61 ARDMQDTFYLKKPLKEEDRRLLLRTHTTPVQARTLAKKNKPPIKIFSIGRVFRRDQVDAT 120
Query: 208 HSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIV 267
H P FHQ+EGL +D+N+SF+DLKGV F+R FF +++RFRPSYFPFTEPSAE+D+
Sbjct: 121 HLPEFHQVEGLVVDENVSFADLKGVLEEFLRKFFG-FEVKVRFRPSYFPFTEPSAEVDVY 179
Query: 268 FQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFY 327
G W+EI GAG V+P VL + +D E+Y GFAFG G+ERL ML+YGIDD+R Y
Sbjct: 180 CCKL---GGWIEIGGAGMVHPNVLEAVGID-EEYPGFAFGLGVERLAMLKYGIDDIRDLY 235
Query: 328 KGNINFLKQF 337
+ ++ FL+QF
Sbjct: 236 ENDLRFLRQF 245
|
Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain. Length = 245 |
| >gnl|CDD|232988 TIGR00468, pheS, phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
Score = 329 bits (846), Expect = e-113
Identities = 146/305 (47%), Positives = 194/305 (63%), Gaps = 15/305 (4%)
Query: 37 KLTQYIKNIKNISINERKR-YGEIINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDIT 95
KL +K + ++ E K G +IN +KI ++ EL + L+ L LK D++
Sbjct: 1 KLKDLLKQLGKLTKEETKPALGALINEVKIELQDELTKLKPELESAGLWSKLKFETYDVS 60
Query: 96 LPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMH 155
LPG G LHP+ R ++ I IF +GF GPE+ETDF NF ALN P++HPAR M
Sbjct: 61 LPGTKIYPGSLHPLTRVIDEIRDIFLGLGFTEETGPEVETDFWNFDALNIPQDHPARDMQ 120
Query: 156 DTFYIKNRYVSNNKPLLRTHTSPMQIRY-SKINKPPIKVITSGRVYRIDS-DSTHSPMFH 213
DTFYIK+R LLRTHT+ +Q+R + KPPI++ + GRV+R D+ D+TH P FH
Sbjct: 121 DTFYIKDRL------LLRTHTTAVQLRTMEEQEKPPIRIFSPGRVFRNDTVDATHLPEFH 174
Query: 214 QIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPL 273
Q+EGL IDKNISF++LKG F++ F +IRFRPSYFPFTEPSAEID+ P
Sbjct: 175 QVEGLVIDKNISFTNLKGFLEEFLKKMFGE--TEIRFRPSYFPFTEPSAEIDVY---CPE 229
Query: 274 KGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINF 333
WLE+ GAG P+VL M +DP Y GFA+G G+ERL ML+YGI D+R Y+ ++ F
Sbjct: 230 GKGWLEVLGAGMFRPEVLEPMGIDPT-YPGFAWGIGIERLAMLKYGITDIRDLYENDLRF 288
Query: 334 LKQFT 338
L+QF
Sbjct: 289 LRQFK 293
|
Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment [Protein synthesis, tRNA aminoacylation]. Length = 293 |
| >gnl|CDD|238277 cd00496, PheRS_alpha_core, Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
Score = 322 bits (829), Expect = e-111
Identities = 121/227 (53%), Positives = 152/227 (66%), Gaps = 10/227 (4%)
Query: 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS 166
HP+ + +E IE IF S+GF +GPE+ETDF NF ALN P++HPAR M DTFYI +
Sbjct: 1 HPLNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYIND---- 56
Query: 167 NNKPLLRTHTSPMQIRYSKINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNIS 225
+ LLRTHTS +Q R KPPI++ + GRVYR D D+TH P FHQIEGL +DK ++
Sbjct: 57 PARLLLRTHTSAVQARALAKLKPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLT 116
Query: 226 FSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQ 285
F+DLKG F + F ++RFRPSYFPFTEPS E+D+ WLEI G G
Sbjct: 117 FADLKGTLEEFAKELFGPI-TKVRFRPSYFPFTEPSFEVDVYCPG---CLGWLEILGCGM 172
Query: 286 VNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNIN 332
V P+VL N +D E+Y GFAFG GLERL ML+YGI D+RLFY ++
Sbjct: 173 VRPEVLENAGID-EEYSGFAFGIGLERLAMLKYGIPDIRLFYSNDLR 218
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. Length = 218 |
| >gnl|CDD|235239 PRK04172, pheS, phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Score = 203 bits (520), Expect = 1e-61
Identities = 111/359 (30%), Positives = 175/359 (48%), Gaps = 62/359 (17%)
Query: 24 LENAKSYYLGKNGKLTQYIKNIKNISINERKRY-------GEIINSIKINIKKEL-NIHR 75
E K ++ K+ + +K K + ER G + I +K+E+ +
Sbjct: 143 AEGDKEELSEEDLKVLKELKKRKLVEEKERTERSVELTDAGLELLKEGIELKEEITQLTP 202
Query: 76 DILKKKQLK-VSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIE 134
++LK + K + ++ P G HP ++ + I +GF+ GP +E
Sbjct: 203 ELLKSGEWKEKEFR--PYNVKAPPPKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVE 260
Query: 135 TDFNNFTALNSPKNHPARSMHDTFYIKNR--------YVSNNK----------------- 169
T+F NF AL P++HPAR M DTFY+K V K
Sbjct: 261 TEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEHGGDTGSRGWGYK 320
Query: 170 --------PLLRTHTSPMQIRY-SKINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLW 219
+LRTHT+ + RY + +PP K + GRV+R D+ D+TH P F+Q+EG+
Sbjct: 321 WDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIV 380
Query: 220 IDKNISFSDLKGVYLNFIRVF-FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWL 278
+ +++SF DL G+ F + FE +++FRP+YFPFTEPS E+++ + W+
Sbjct: 381 MGEDVSFRDLLGILKEFYKRLGFE----EVKFRPAYFPFTEPSVEVEVYHE----GLGWV 432
Query: 279 EISGAGQVNPKVLCNMNLDP--EKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLK 335
E+ GAG P+VL +P A+G G+ERL MLR G+DD+R Y +I +L+
Sbjct: 433 ELGGAGIFRPEVL-----EPLGIDVPVLAWGLGIERLAMLRLGLDDIRDLYSSDIEWLR 486
|
Length = 489 |
| >gnl|CDD|215458 PLN02853, PLN02853, Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 3e-41
Identities = 94/268 (35%), Positives = 133/268 (49%), Gaps = 53/268 (19%)
Query: 102 NKGGLHPIMRTLERIEKIFYSIGFDITDGPE---IETDFNNFTALNSPKNHPARSMHDTF 158
G LHP+++ ++ KIF +GF + P +E+ F NF AL P+ HPAR HDTF
Sbjct: 216 EGGHLHPLLKVRQQFRKIFLQMGF--EEMPTNNFVESSFWNFDALFQPQQHPARDSHDTF 273
Query: 159 YIK---------NRYVSN------------------------NKPLLRTHTSPMQIR--Y 183
++K YV NK LLRTHT+ + R Y
Sbjct: 274 FLKAPATTRQLPEDYVERVKTVHESGGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLY 333
Query: 184 SKINKP--PIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240
K P + + RV+R ++ D TH FHQ+EGL D+ ++ DL GV + F
Sbjct: 334 KLAQKGFKPKRYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDRGLTLGDLIGV----LEDF 389
Query: 241 FESDNI-QIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPE 299
F + ++RF+P+Y P+TEPS EI F W+E+ +G P++L M L PE
Sbjct: 390 FSRLGMTKLRFKPAYNPYTEPSMEI---FSYHEGLKKWVEVGNSGMFRPEMLLPMGL-PE 445
Query: 300 KYIGFAFGSGLERLTMLRYGIDDLR-LF 326
A+G LER TM+ YGID++R LF
Sbjct: 446 DVNVIAWGLSLERPTMILYGIDNIRDLF 473
|
Length = 492 |
| >gnl|CDD|240361 PTZ00326, PTZ00326, phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 6e-41
Identities = 93/307 (30%), Positives = 139/307 (45%), Gaps = 73/307 (23%)
Query: 79 KKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETD-- 136
K + K + + G+ G LHP+++ +I +GF+ E+ T+
Sbjct: 207 KNAEFK------EYNFNALGKKIGGGNLHPLLKVRREFREILLEMGFE-----EMPTNRY 255
Query: 137 ----FNNFTALNSPKNHPARSMHDTFYIKNRYVSNN------------------------ 168
F NF AL P+ HPAR DTF++ S
Sbjct: 256 VESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVKKVHEVGGYGSIG 315
Query: 169 -----------KPLLRTHTSPMQIRY-------SKINKP--PIKVITSGRVYRIDS-DST 207
K +LRTHT+ + R K P P K + RV+R ++ D+T
Sbjct: 316 WRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDAT 375
Query: 208 HSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNI-QIRFRPSYFPFTEPSAEIDI 266
H FHQ+EG ID+N++ DL G IR FF I ++RF+P++ P+TEPS EI
Sbjct: 376 HLAEFHQVEGFVIDRNLTLGDLIGT----IREFFRRIGITKLRFKPAFNPYTEPSMEI-- 429
Query: 267 VFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLR-L 325
F P W+E+ +G P++L M PE A+G LER TM++YGI ++R L
Sbjct: 430 -FGYHPGLKKWVEVGNSGIFRPEMLRPMGF-PEDVTVIAWGLSLERPTMIKYGIKNIRDL 487
Query: 326 F-YKGNI 331
F +K ++
Sbjct: 488 FGHKVDL 494
|
Length = 494 |
| >gnl|CDD|215422 PLN02788, PLN02788, phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 9e-40
Identities = 83/258 (32%), Positives = 122/258 (47%), Gaps = 36/258 (13%)
Query: 98 GRGKNKGGLHPIMRTLERIEKIF---YSIGFDITDG--PEIETDFNNFTALNSPKNHPAR 152
G ++ HP+ I F YS F D P I + NF + P +H +R
Sbjct: 59 GMQLHRRPDHPLGILKNAIYDYFDENYSNKFKKFDDLSP-IVSTKQNFDDVLVPPDHVSR 117
Query: 153 SMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINKPPIKVITSGRVYRIDS-DSTHSPM 211
S +DT+Y+ + + +LR HTS Q + + +G VYR DS D+TH P+
Sbjct: 118 SYNDTYYV------DAQTVLRCHTSAHQAELLRAGHT--HFLVTGDVYRRDSIDATHYPV 169
Query: 212 FHQIEGL-------WIDKNIS-----FSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTE 259
FHQ+EG+ W + DLK R F ++++R+ +YFPFT
Sbjct: 170 FHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARHLF--GDVEMRWVDAYFPFTN 227
Query: 260 PSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYG 319
PS E++I F+ G WLE+ G G ++L N +AFG GLERL M+ +
Sbjct: 228 PSFELEIFFK-----GEWLEVLGCGVTEQEILKNNGRSDNV--AWAFGLGLERLAMVLFD 280
Query: 320 IDDLRLFYKGNINFLKQF 337
I D+RLF+ + F QF
Sbjct: 281 IPDIRLFWSDDERFTSQF 298
|
Length = 402 |
| >gnl|CDD|129561 TIGR00469, pheS_mito, phenylalanyl-tRNA synthetase, mitochondrial | Back alignment and domain information |
|---|
Score = 83.6 bits (206), Expect = 8e-18
Identities = 39/93 (41%), Positives = 60/93 (64%), Gaps = 5/93 (5%)
Query: 246 IQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFA 305
+++R+ +YFPFT PS EI+I F+D WLE+ G G + +L + P + IG+A
Sbjct: 263 LKVRWIDAYFPFTAPSWEIEIWFKD-----EWLELCGCGIIRHDILLRAGVHPSETIGWA 317
Query: 306 FGSGLERLTMLRYGIDDLRLFYKGNINFLKQFT 338
FG GL+R+ ML + I D+RLF+ + FL+QF+
Sbjct: 318 FGLGLDRIAMLLFDIPDIRLFWSNDEGFLRQFS 350
|
Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This model models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species [Protein synthesis, tRNA aminoacylation]. Length = 460 |
| >gnl|CDD|129561 TIGR00469, pheS_mito, phenylalanyl-tRNA synthetase, mitochondrial | Back alignment and domain information |
|---|
Score = 72.8 bits (178), Expect = 3e-14
Identities = 49/149 (32%), Positives = 66/149 (44%), Gaps = 22/149 (14%)
Query: 89 TNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGP--EIETDFN-------N 139
T+KI I L K+ HP+ + IEK F + P +I +F N
Sbjct: 25 TDKI-IKLTDANKHLKEDHPLGIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMEN 83
Query: 140 FTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR-YSKI--NKPPIKV--I 194
F L P +HP R D +YI N + LLR HTS ++ + + IK +
Sbjct: 84 FDNLGFPADHPGRQKSDCYYI------NEQHLLRAHTSAHELECFQGGLDDSDNIKSGFL 137
Query: 195 TSGRVYRIDS-DSTHSPMFHQIEGLWIDK 222
S VYR D D TH P+FHQ +G I K
Sbjct: 138 ISADVYRRDEIDKTHYPVFHQADGAAIRK 166
|
Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This model models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species [Protein synthesis, tRNA aminoacylation]. Length = 460 |
| >gnl|CDD|111764 pfam02912, Phe_tRNA-synt_N, Aminoacyl tRNA synthetase class II, N-terminal domain | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 3e-11
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 16 STAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKINIKKELNIHR 75
+ A + +LE + YLGK G LT+ +K + +S ER + G +IN K +++ L +
Sbjct: 1 AAASDLKALEAIRVKYLGKKGPLTELLKGLGKLSPEERPKVGALINEAKEAVEEALEERK 60
Query: 76 DILKKKQLKVSLK 88
L++ +L L
Sbjct: 61 AALEEAELNARLA 73
|
Length = 73 |
| >gnl|CDD|129562 TIGR00470, sepS, O-phosphoserine--tRNA ligase | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 1e-08
Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 25/166 (15%)
Query: 172 LRTH-TSPMQIRYSKINKP---PIKVITSGRVYRIDS--DSTHSPMFHQIEGLWIDKNIS 225
LR+H TS I S I P+K+ + R +R + D +H +H + +D+ +S
Sbjct: 185 LRSHMTSGWFITLSSIIDKRKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVS 244
Query: 226 FSDLKGVYLNFIRVF-FESDNIQIRFRPS------YFPFTEPSAEIDIVFQDGPLKGNWL 278
D K V + F F + RFRP Y P T+ V+ P G W+
Sbjct: 245 VDDGKAVAEGLLAQFGFT----KFRFRPDEKKSKYYIPETQTE-----VYAYHPKLGEWI 295
Query: 279 EISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLR 324
E++ G +P L N+D G G+ERL M+ YG +D+R
Sbjct: 296 EVATFGVYSPIALAKYNIDVPV---MNLGLGVERLAMILYGYEDVR 338
|
This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys [Amino acid biosynthesis, Serine family, Protein synthesis, tRNA aminoacylation]. Length = 533 |
| >gnl|CDD|224935 COG2024, COG2024, Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 9e-08
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 27/171 (15%)
Query: 172 LRTH-TSPMQIRYSKINK---PPIKVITSGRVYRIDS--DSTHSPMFHQIEGLWIDKNIS 225
LR+H TS I S+I K PP+K+ + R +R + D++H +H + +D++++
Sbjct: 185 LRSHMTSGWFITLSEILKREDPPLKLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVT 244
Query: 226 FSDLKGVYLNFIRVF-FESDNIQIRFRPS------YFPFTEPSAEI-----DIVFQDGPL 273
D K V +R F FE + RFRP Y P T+ E+ +V
Sbjct: 245 VDDGKAVAEGLLRQFGFE----KFRFRPDEKKSKYYVPGTQ--TEVYAYHPKLVGSIEKY 298
Query: 274 KGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLR 324
W+EI+ G +P L +D Y G G+ERL M+ +G DD+R
Sbjct: 299 SDGWIEIATFGLYSPIALAEYGID---YPVMNLGLGVERLAMILHGADDVR 346
|
Length = 536 |
| >gnl|CDD|235754 PRK06253, PRK06253, O-phosphoseryl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 39/173 (22%)
Query: 172 LRTH-TSPMQIRYSKINK---PPIKVITSGRVYRIDS--DSTHSPMFHQIEGLWIDKNIS 225
LR+H TS I S + + PIK+ + R +R + D++ +H + D++++
Sbjct: 186 LRSHMTSGWFITLSSLLEKRPLPIKLFSIDRCFRREQREDASRLMTYHSASCVIADEDVT 245
Query: 226 FSDLKGVYLNFIRVF-FESDNIQIRFRPS------YFPFTEPSAEIDIVFQDGPLKGNWL 278
D K V + F F + +FRP Y P T+ V+ P W+
Sbjct: 246 VDDGKAVAEGLLSQFGFT----KFKFRPDEKRSKYYTPDTQTE-----VYAYHPKLDGWV 296
Query: 279 EISGAGQVNPKVLCN-------MNLDPEKYIGFAFGSGLERLTMLRYGIDDLR 324
E++ G +P L MNL G G+ERL M+ YG +D+R
Sbjct: 297 EVATFGIYSPVALAEYGIDVPVMNL----------GLGVERLAMILYGAEDVR 339
|
Length = 529 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 338 | |||
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 100.0 | |
| COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [T | 100.0 | |
| PF01409 | 247 | tRNA-synt_2d: tRNA synthetases class II core domai | 100.0 | |
| TIGR00468 | 294 | pheS phenylalanyl-tRNA synthetase, alpha subunit. | 100.0 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 100.0 | |
| TIGR00469 | 460 | pheS_mito phenylalanyl-tRNA synthetase, mitochondr | 100.0 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 100.0 | |
| PLN02788 | 402 | phenylalanine-tRNA synthetase | 100.0 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 100.0 | |
| TIGR00470 | 533 | sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam | 100.0 | |
| cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe | 100.0 | |
| KOG2784|consensus | 483 | 100.0 | ||
| KOG2783|consensus | 436 | 100.0 | ||
| TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase. PylS is the archa | 100.0 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 100.0 | |
| PRK06253 | 529 | O-phosphoseryl-tRNA synthetase; Reviewed | 100.0 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 99.97 | |
| PLN02265 | 597 | probable phenylalanyl-tRNA synthetase beta chain | 99.97 | |
| TIGR00471 | 551 | pheT_arch phenylalanyl-tRNA synthetase, beta subun | 99.97 | |
| cd00769 | 198 | PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR | 99.96 | |
| COG2024 | 536 | Phenylalanyl-tRNA synthetase alpha subunit (archae | 99.96 | |
| PRK00629 | 791 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 99.93 | |
| CHL00192 | 704 | syfB phenylalanyl-tRNA synthetase beta chain; Prov | 99.93 | |
| TIGR00472 | 798 | pheT_bact phenylalanyl-tRNA synthetase, beta subun | 99.93 | |
| COG0072 | 650 | PheT Phenylalanyl-tRNA synthetase beta subunit [Tr | 99.93 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 99.87 | |
| KOG2472|consensus | 578 | 99.85 | ||
| PF02912 | 73 | Phe_tRNA-synt_N: Aminoacyl tRNA synthetase class I | 99.69 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 99.35 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 99.18 | |
| PRK06462 | 335 | asparagine synthetase A; Reviewed | 99.18 | |
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II co | 99.15 | |
| cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II co | 99.15 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 99.13 | |
| PRK05159 | 437 | aspC aspartyl-tRNA synthetase; Provisional | 99.05 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 99.03 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 99.0 | |
| cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetas | 98.91 | |
| PRK00037 | 412 | hisS histidyl-tRNA synthetase; Reviewed | 98.85 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 98.82 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 98.81 | |
| TIGR00442 | 397 | hisS histidyl-tRNA synthetase. This model finds a | 98.8 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 98.79 | |
| PLN02603 | 565 | asparaginyl-tRNA synthetase | 98.72 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 98.71 | |
| COG1190 | 502 | LysU Lysyl-tRNA synthetase (class II) [Translation | 98.7 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 98.69 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 98.68 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 98.65 | |
| PLN02502 | 553 | lysyl-tRNA synthetase | 98.64 | |
| PLN02532 | 633 | asparagine-tRNA synthetase | 98.64 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 98.64 | |
| PF00152 | 335 | tRNA-synt_2: tRNA synthetases class II (D, K and N | 98.61 | |
| COG2269 | 322 | Truncated, possibly inactive, lysyl-tRNA synthetas | 98.54 | |
| PF00587 | 173 | tRNA-synt_2b: tRNA synthetase class II core domain | 98.52 | |
| PTZ00425 | 586 | asparagine-tRNA ligase; Provisional | 98.5 | |
| PLN02678 | 448 | seryl-tRNA synthetase | 98.5 | |
| KOG1885|consensus | 560 | 98.46 | ||
| PRK02983 | 1094 | lysS lysyl-tRNA synthetase; Provisional | 98.44 | |
| cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla | 98.41 | |
| CHL00201 | 430 | syh histidine-tRNA synthetase; Provisional | 98.38 | |
| TIGR00459 | 583 | aspS_bact aspartyl-tRNA synthetase, bacterial type | 98.36 | |
| TIGR00414 | 418 | serS seryl-tRNA synthetase. This model represents | 98.36 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 98.31 | |
| cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II | 98.3 | |
| PF13393 | 311 | tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI | 98.27 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 98.24 | |
| PRK00476 | 588 | aspS aspartyl-tRNA synthetase; Validated | 98.23 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 98.22 | |
| COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, riboso | 98.22 | |
| TIGR00443 | 314 | hisZ_biosyn_reg ATP phosphoribosyltransferase, reg | 98.2 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 98.19 | |
| PRK05431 | 425 | seryl-tRNA synthetase; Provisional | 98.18 | |
| PLN02903 | 652 | aminoacyl-tRNA ligase | 98.17 | |
| PLN02972 | 763 | Histidyl-tRNA synthetase | 98.16 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 98.15 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 98.14 | |
| KOG0556|consensus | 533 | 98.08 | ||
| PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subu | 98.08 | |
| cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class | 98.07 | |
| PLN02530 | 487 | histidine-tRNA ligase | 98.07 | |
| PRK12420 | 423 | histidyl-tRNA synthetase; Provisional | 98.01 | |
| PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subu | 98.01 | |
| PRK09194 | 565 | prolyl-tRNA synthetase; Provisional | 97.99 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 97.99 | |
| PLN02320 | 502 | seryl-tRNA synthetase | 97.98 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 97.93 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 97.92 | |
| TIGR00409 | 568 | proS_fam_II prolyl-tRNA synthetase, family II. Pro | 97.92 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 97.9 | |
| cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II | 97.89 | |
| TIGR00408 | 472 | proS_fam_I prolyl-tRNA synthetase, family I. Proly | 97.82 | |
| cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) | 97.75 | |
| cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik | 97.7 | |
| PRK08661 | 477 | prolyl-tRNA synthetase; Provisional | 97.64 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 97.51 | |
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl | 97.43 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 97.4 | |
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, riboso | 97.2 | |
| PRK12325 | 439 | prolyl-tRNA synthetase; Provisional | 97.18 | |
| PLN02837 | 614 | threonine-tRNA ligase | 97.15 | |
| PRK00960 | 517 | seryl-tRNA synthetase; Provisional | 97.12 | |
| PRK12294 | 272 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.1 | |
| KOG1936|consensus | 518 | 96.8 | ||
| TIGR00415 | 520 | serS_MJ seryl-tRNA synthetase, Methanococcus janna | 96.69 | |
| PRK04173 | 456 | glycyl-tRNA synthetase; Provisional | 96.67 | |
| KOG0554|consensus | 446 | 96.53 | ||
| PRK03991 | 613 | threonyl-tRNA synthetase; Validated | 96.5 | |
| COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosoma | 94.98 | |
| COG3705 | 390 | HisZ ATP phosphoribosyltransferase involved in his | 94.45 | |
| KOG2411|consensus | 628 | 93.96 | ||
| COG0172 | 429 | SerS Seryl-tRNA synthetase [Translation, ribosomal | 92.9 | |
| PRK07080 | 317 | hypothetical protein; Validated | 92.39 | |
| PF00152 | 335 | tRNA-synt_2: tRNA synthetases class II (D, K and N | 91.88 | |
| PLN02903 | 652 | aminoacyl-tRNA ligase | 91.7 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 91.58 | |
| KOG1035|consensus | 1351 | 90.62 | ||
| PRK14894 | 539 | glycyl-tRNA synthetase; Provisional | 90.1 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 89.46 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 89.15 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 87.95 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 87.94 | |
| PLN02502 | 553 | lysyl-tRNA synthetase | 87.58 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 87.53 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 87.49 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 87.36 | |
| PRK00476 | 588 | aspS aspartyl-tRNA synthetase; Validated | 87.13 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 86.13 | |
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, riboso | 85.2 | |
| PLN02734 | 684 | glycyl-tRNA synthetase | 85.06 | |
| TIGR00389 | 551 | glyS_dimeric glycyl-tRNA synthetase, dimeric type. | 84.46 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 83.61 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 82.72 | |
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl | 80.95 |
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-104 Score=756.17 Aligned_cols=328 Identities=54% Similarity=0.954 Sum_probs=317.7
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcchHHHHHHHhcCCChhHhhhhchhhHHHHHHHHHHHHHHHHHHHHh
Q psy9576 2 NELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKINIKKELNIHRDILKKK 81 (338)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~lGkkg~l~~l~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~~~ 81 (338)
++++++.+++.++|++++|+++|+++|++||||||.||.++++|+++|+||||++|+.+|++|+.+++++++++++|+.+
T Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~l~~~r~~~lgkkg~l~~~~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~~~ 82 (339)
T PRK00488 3 EDLEELVEEALAAIAAASDLEALEALRVKYLGKKGELTELLKGLGKLPPEERKEAGALINELKQAIEAALEERKEELEAA 82 (339)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeec
Q psy9576 82 QLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIK 161 (338)
Q Consensus 82 ~~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~ 161 (338)
++++++++|.+|+|+|++....|+.||++++.++||++|.+|||+|+.+|+++++++||++||+|++||||+++|||||+
T Consensus 83 ~~~~~l~~e~~d~t~p~~~~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~ 162 (339)
T PRK00488 83 ALNARLAAETIDVTLPGRRIELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYID 162 (339)
T ss_pred HHHHhhhhccccccCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEc
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCccCCCcceEeccchHHHHHHHhcCCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 162 NRYVSNNKPLLRTHTSPMQIRYSKINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 162 np~~~~~~~~LRt~lsp~~l~~l~~~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
+. .+|||||||+|+++|+++.+|+|+|++|+|||+|. |+||+|+|||++|++++++++|+|||++|+.|++++
T Consensus 163 ~~------~lLRThTSp~qir~L~~~~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~ 236 (339)
T PRK00488 163 DG------LLLRTHTSPVQIRTMEKQKPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAF 236 (339)
T ss_pred CC------ceeeccCcHHHHHHHHhcCCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 54 89999999999999998889999999999999995 999999999999999999999999999999999999
Q ss_pred ccCCCeeEEEccCCCCCCCCceEEEEEee--cC------CCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhH
Q psy9576 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQ--DG------PLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLER 312 (338)
Q Consensus 241 fg~~~~~~r~~ps~fpf~~Ps~e~~i~~~--~g------~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelgler 312 (338)
||. +.++||||+|||||+||+|+||.|. +| | ++||+||||||||||+||+++||||++|+||||||||||
T Consensus 237 fg~-~~~~R~rpsyFPFTePS~Evdv~~~~~~g~gc~~ck-~~~WiEilG~Gmv~p~vl~~~gid~~~~~G~AfG~GleR 314 (339)
T PRK00488 237 FGE-DVKIRFRPSYFPFTEPSAEVDVSCFKCGGKGCRVCK-GTGWLEILGCGMVHPNVLRNVGIDPEEYSGFAFGMGIER 314 (339)
T ss_pred cCC-CCeEEecCCCCCCCCCceEEEEEEeccCCCcccccC-CCCceEEeccCccCHHHHHHcCCCcccceEEEEeecHHH
Confidence 995 7899999999999999999999986 22 3 478999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcccccccCChhhhccC
Q psy9576 313 LTMLRYGIDDLRLFYKGNINFLKQF 337 (338)
Q Consensus 313 lam~~~~i~diR~~~~~d~rfl~qf 337 (338)
|||++|||+|||+||+||+|||+||
T Consensus 315 laMl~ygi~DiR~~~~~D~rfl~qF 339 (339)
T PRK00488 315 LAMLKYGIDDIRLFYENDLRFLKQF 339 (339)
T ss_pred HHHHHhCCcHHHHHHhcCHhHHhcC
Confidence 9999999999999999999999998
|
|
| >COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-98 Score=705.98 Aligned_cols=328 Identities=51% Similarity=0.865 Sum_probs=313.3
Q ss_pred hHHHHHHHHHHHHHhcCCCH-HHHHHHHHHhcCCcchHHHHHHHhcCCCh-hHhhhhchhhHHHHHHHHHHHHHHHHHHH
Q psy9576 2 NELKKLLIQAKIDFSTAVSI-SSLENAKSYYLGKNGKLTQYIKNIKNISI-NERKRYGEIINSIKINIKKELNIHRDILK 79 (338)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~-~~l~~~~~~~lGkkg~l~~l~~~l~~l~~-eer~~~G~~~n~~k~~~~~~~~~~~~~l~ 79 (338)
..++.+.+++..+|+.++|. ++|+++|++||||||.|+.++++++++++ |||+.+|+.+|.+|+++++++.+++..|.
T Consensus 4 ~~l~~l~~~~~~~i~~~~~~~~~L~~~~~~~lgk~g~l~~~~k~l~~~~~~eer~~~g~~in~~~~~~~~~~~~~~~~l~ 83 (335)
T COG0016 4 IALGRLAKKGIAAIELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVGALINELKKEVEDAITELTPELE 83 (335)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCcccchHHHHHHhccCChhhhhhhhhhhHHhhHHHHHHHHHHHHHHHH
Confidence 35889999999999999995 99999999999999999999999999999 99999999999999999999999999999
Q ss_pred HhhHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCcccee
Q psy9576 80 KKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFY 159 (338)
Q Consensus 80 ~~~~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~ 159 (338)
.....++++.+.+|+++|+.....|+.||+++++++|+++|.+|||+|+.+|++++++||||+||+|.+||||+||||||
T Consensus 84 ~~~~~~~l~~e~~dv~lp~~~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy 163 (335)
T COG0016 84 AAGLWERLAFEKIDVTLPGRRIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFY 163 (335)
T ss_pred HHHHHHhhhccCCCcCCCCccCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEE
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCccCCCcceEeccchHHHHHHHhcCCC-CceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHH
Q psy9576 160 IKNRYVSNNKPLLRTHTSPMQIRYSKINKP-PIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFI 237 (338)
Q Consensus 160 i~np~~~~~~~~LRt~lsp~~l~~l~~~~~-pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll 237 (338)
+++. .+..+|||||||+|+|+|.++.+ |+|+|++|+|||+| .|+||+|+|||++|+++|+++||.||||+|+.|+
T Consensus 164 ~~~~---~~~~lLRTHTs~vq~R~l~~~~~~P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~ 240 (335)
T COG0016 164 LKDD---REKLLLRTHTSPVQARTLAENAKIPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFA 240 (335)
T ss_pred EcCC---CCceeecccCcHhhHHHHHhCCCCCceEecccceecCCCCCcccchheeeeEEEEEeCCccHHHHHHHHHHHH
Confidence 9875 22569999999999999998765 99999999999999 6999999999999999999999999999999999
Q ss_pred HHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHH
Q psy9576 238 RVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLR 317 (338)
Q Consensus 238 ~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~ 317 (338)
+++||. +.++||||||||||+||+|+||+|. + .+||+||||||||||+||+++||+|++|.|||||||+|||||++
T Consensus 241 ~~~fg~-~~~vRfrpsyFPFTEPS~Evdv~~~-~--~~~WlEi~G~Gmv~P~VL~~~G~~~~~~~GfAfGlGlERlAMLk 316 (335)
T COG0016 241 KKFFGE-DVKVRFRPSYFPFTEPSAEVDVYCP-G--CGGWLEILGCGMVHPNVLEAVGIDPEEYSGFAFGLGLERLAMLK 316 (335)
T ss_pred HHhcCC-CcceEeecCCCCCCCCeEEEEEEEc-C--CCCEEEEecccccCHHHHHhcCCCCCcceEEEEeecHHHHHHHH
Confidence 999885 5589999999999999999999992 1 15799999999999999999999999999999999999999999
Q ss_pred cCCCcccccccCChhhhcc
Q psy9576 318 YGIDDLRLFYKGNINFLKQ 336 (338)
Q Consensus 318 ~~i~diR~~~~~d~rfl~q 336 (338)
|||+|||+||+||+|||+|
T Consensus 317 ygI~DIR~l~~~D~rfl~q 335 (335)
T COG0016 317 YGIPDIRDLYENDLRFLRQ 335 (335)
T ss_pred hCCcHHHHHHhccchhhcC
Confidence 9999999999999999998
|
|
| >PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-78 Score=556.99 Aligned_cols=243 Identities=54% Similarity=0.985 Sum_probs=223.5
Q ss_pred cCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccC--CC
Q psy9576 91 KIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS--NN 168 (338)
Q Consensus 91 ~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~--~~ 168 (338)
++|+|+|+...+.|+.||++++.++|+++|.++||+|+++++++++++|||+||+|++||||+++||||+.+|. + ++
T Consensus 1 ~~d~~~p~~~~~~G~~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~-~~~~~ 79 (247)
T PF01409_consen 1 KIDVTLPGKRFTPGRLHPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPY-SAEED 79 (247)
T ss_dssp ---TTSGCTTCCCSBTSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSS-BCECS
T ss_pred CccccCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccc-cccch
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999995 6 79
Q ss_pred cceEeccchHHHHHHH-hcCCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCCCe
Q psy9576 169 KPLLRTHTSPMQIRYS-KINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNI 246 (338)
Q Consensus 169 ~~~LRt~lsp~~l~~l-~~~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~ 246 (338)
+++|||||+|+++++| .++.+|+|+|++|+|||+|. |+||+|+|||++|++++++++|.+|||+|+.|++++||. +.
T Consensus 80 ~~vLRThts~~~~~~l~~~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG~-~~ 158 (247)
T PF01409_consen 80 YSVLRTHTSPGQLRTLNKHRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFGI-DV 158 (247)
T ss_dssp SEEE-SSTHHHHHHHHTTTSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHTT-TE
T ss_pred hhhhhhhhhHHHHHHHHHhcCCCeEEEecCceEecCCcccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhhc-cc
Confidence 9999999999999999 44578999999999999995 999999999999999999999999999999999999996 56
Q ss_pred eEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHcCCCccccc
Q psy9576 247 QIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 247 ~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~~i~diR~~ 326 (338)
++||+|+|||||+||+|++|+|..++ +.+|+||||||||||+||+++||| ++++|+|||||||||||++|||+|||+|
T Consensus 159 ~~r~~ps~fPftePs~e~~i~~~~~~-~~~wiEvgg~G~vhP~Vl~~~gid-~~~~~~A~G~GleRlam~~~gi~diR~~ 236 (247)
T PF01409_consen 159 KVRFRPSYFPFTEPSREADIYCGVCK-GGGWIEVGGCGMVHPEVLENWGID-EEYPGFAFGLGLERLAMLKYGIPDIRLL 236 (247)
T ss_dssp EEEEEECEETTEEEEEEEEEEEECTT-TTCEEEEEEEEEE-HHHHHHTT---TTSEEEEEEEEHHHHHHHHHT-SSGGHH
T ss_pred ceEeecCCCCcccCCeEEEEEEeecc-CCCceEEeecccccHhhhhccCcC-ccceEEEecCCHHHHHHHHcCCchHHHH
Confidence 89999999999999999999974234 568999999999999999999998 7799999999999999999999999999
Q ss_pred ccCChhhhccC
Q psy9576 327 YKGNINFLKQF 337 (338)
Q Consensus 327 ~~~d~rfl~qf 337 (338)
|+||+|||+||
T Consensus 237 ~~~d~~fl~qf 247 (247)
T PF01409_consen 237 YSNDLRFLRQF 247 (247)
T ss_dssp HTTTHHHHGGG
T ss_pred hcCcHhHHhcC
Confidence 99999999998
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B .... |
| >TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-76 Score=557.19 Aligned_cols=289 Identities=50% Similarity=0.905 Sum_probs=272.3
Q ss_pred HHHHHHHhcCCChhH-hhhhchhhHHHHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHH
Q psy9576 38 LTQYIKNIKNISINE-RKRYGEIINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERI 116 (338)
Q Consensus 38 l~~l~~~l~~l~~ee-r~~~G~~~n~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~I 116 (338)
++.++++|+++++|| |+++|+.+|++|+++++++++++.++..++..+++..+.+|+|+|+.....|..||.+++.++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~tlp~~~~~~g~~~p~~~~~~~i 81 (294)
T TIGR00468 2 LKDLLKQLGKLTKEETKPALGALINEVKIELEDELTKLKPELEKAGLWSKLKFETYDVTLPGTKIYPGSLHPLTRVIDEI 81 (294)
T ss_pred hHHHHHHhcCCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCCcCHHHHHHHHH
Confidence 789999999999999 9999999999999999999999999999998999999999999999777889999999999999
Q ss_pred HHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC-CCceEEE
Q psy9576 117 EKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK-PPIKVIT 195 (338)
Q Consensus 117 r~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~-~pirife 195 (338)
|++|+++||+|+.+|+++++++||++||+|++||+|+++|+|++.+. ++|||||+|+++++|+++. +|+|+||
T Consensus 82 r~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~d~------~vLRtsl~p~ll~~l~~N~~~pirlFE 155 (294)
T TIGR00468 82 RDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIKDR------LLLRTHTTAVQLRTMEENEKPPIRIFS 155 (294)
T ss_pred HHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeecCC------cceecccHHHHHHHHHhcCCCCceEEE
Confidence 99999999999999999999899999999999999999999998733 8999999999999998876 9999999
Q ss_pred eeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCC
Q psy9576 196 SGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLK 274 (338)
Q Consensus 196 iG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~ 274 (338)
+|+|||+|. |++|.|+|||++|++++++++|+||||+|+.|++.+ |. ..+++|+|+++||+|||++++|.|.+|
T Consensus 156 iGrVfr~d~~d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l-~~-~~~~~~~~~~~p~~~Ps~e~~i~~~~g--- 230 (294)
T TIGR00468 156 PGRVFRNDTVDATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKM-FG-ETEIRFRPSYFPFTEPSAEIDVYCWEG--- 230 (294)
T ss_pred ecceEEcCCCCCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHh-CC-CcceeeccCCCCCCCCCEEEEEEEeCC---
Confidence 999999995 889999999999999999999999999999999999 53 346899999999999999999988322
Q ss_pred CCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHcCCCcccccccCChhhhccCC
Q psy9576 275 GNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQFT 338 (338)
Q Consensus 275 ~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~~d~rfl~qf~ 338 (338)
.||+|||+||||||+|++++||+++ |+|+|||||+|||||++|||+|||+||+||+|||+||+
T Consensus 231 ~~w~eiG~~G~vhP~Vl~~~gi~~~-~~v~afel~lerl~m~~~~i~dir~~~~~d~~~l~~~~ 293 (294)
T TIGR00468 231 KTWLEVLGAGMFRPEVLEPMGIDPT-YPGFAWGIGIERLAMLKYGIDDIRDLYENDLRFLRQFK 293 (294)
T ss_pred CccEEEEEeccCcHHHHHHCCCCCC-CeEEEEEeeHHHHHHHHhCCcHHHHHHcCChHHHhhcC
Confidence 2799999999999999999999976 89999999999999999999999999999999999995
|
Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. |
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-68 Score=525.16 Aligned_cols=240 Identities=36% Similarity=0.639 Sum_probs=219.6
Q ss_pred cCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEe-eCCccccchhhhhhcCCCCCCCCCcCccceeecCCccC---
Q psy9576 91 KIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDIT-DGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS--- 166 (338)
Q Consensus 91 ~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev-~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~--- 166 (338)
.+|+..|+.....|+.||+++++++||++|.+|||+|+ .++.++++++|||+||+|++||||++||||||++|...
T Consensus 205 ~Yn~~a~g~~~~~G~~HPl~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~ 284 (492)
T PLN02853 205 EYNFNALGAPPEGGHLHPLLKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQL 284 (492)
T ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCCCCCCCCccceEEEcCccccccC
Confidence 46788888889999999999999999999999999999 79999999999999999999999999999999865211
Q ss_pred ------------------------------CCcceEeccchHHHHHHHhc--C--CCCceEEEeeeEEEeCC-CCCCCcc
Q psy9576 167 ------------------------------NNKPLLRTHTSPMQIRYSKI--N--KPPIKVITSGRVYRIDS-DSTHSPM 211 (338)
Q Consensus 167 ------------------------------~~~~~LRt~lsp~~l~~l~~--~--~~pirifeiG~Vyr~d~-d~th~~~ 211 (338)
....+||||||++++++|.. + .+|+|+|++|+|||+|. |+||+|+
T Consensus 285 p~~~~erVk~~He~G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDatH~~e 364 (492)
T PLN02853 285 PEDYVERVKTVHESGGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDRTHLAE 364 (492)
T ss_pred cHHHHHHHHHHHhcCCCCccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCcccCcc
Confidence 14689999999999999974 2 47999999999999995 9999999
Q ss_pred eeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHh
Q psy9576 212 FHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVL 291 (338)
Q Consensus 212 f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl 291 (338)
|||++|+++|++++|.+|+|++..|++.+ |. .++||+|+|||||+||+|+++++ .. .++|+|||||||+||+||
T Consensus 365 FhQ~EG~vvd~~~t~~~L~g~l~~f~~~l-g~--~~~RfrP~yfPfTEPS~Ei~v~~--~~-~gkWiEi~g~Gm~rpevl 438 (492)
T PLN02853 365 FHQVEGLVCDRGLTLGDLIGVLEDFFSRL-GM--TKLRFKPAYNPYTEPSMEIFSYH--EG-LKKWVEVGNSGMFRPEML 438 (492)
T ss_pred ceeEEEEEEeCCCCHHHHHHHHHHHHHHc-CC--ceEEEecCCCCCCCCeEEEEEEe--cC-CCCEEEEecCcCcCHHHH
Confidence 99999999999999999999999999998 94 88999999999999999999954 11 234999999999999999
Q ss_pred hhCCCCCCCeEEEEEeechhHHHHHHcCCCccccccc--CChhhhccC
Q psy9576 292 CNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYK--GNINFLKQF 337 (338)
Q Consensus 292 ~~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~--~d~rfl~qf 337 (338)
+++|| |+.|+|+||||||||+||++|||+|||+||+ +|+.||+..
T Consensus 439 ~~~Gi-~~~~~~~A~GlGleRlaMl~ygi~DIR~l~~~k~Dl~~lr~~ 485 (492)
T PLN02853 439 LPMGL-PEDVNVIAWGLSLERPTMILYGIDNIRDLFGHKVDLGLIKRN 485 (492)
T ss_pred HhCCC-CCcceEEEEEecHHHHHHHHhCCcHHHHHhCCCCCHHHHhhC
Confidence 99999 5779999999999999999999999999999 689999753
|
|
| >TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-66 Score=507.14 Aligned_cols=227 Identities=40% Similarity=0.679 Sum_probs=211.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhhC--------CCeEeeC--CccccchhhhhhcCCCCCCCCCcCccceeecCCccCC
Q psy9576 98 GRGKNKGGLHPIMRTLERIEKIFYSI--------GFDITDG--PEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN 167 (338)
Q Consensus 98 ~~~~~~G~~hp~~~~~~~Ir~~~~~~--------GF~Ev~~--~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~ 167 (338)
++....|..||++.+.++|.++|.++ ||+++.+ | ++++++|||+||+|++||+|+++|||||++.
T Consensus 33 ~r~~~~~~~HPl~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~P-vvt~~~NFD~Ln~P~dHPaR~~~DT~Yi~~~---- 107 (460)
T TIGR00469 33 DANKHLKEDHPLGIIRDLIEKKFNGADNNQRGNPLFKIFDNFKP-VVTTMENFDNLGFPADHPGRQKSDCYYINEQ---- 107 (460)
T ss_pred ccCccCCCCCcHHHHHHHHHHHHHhhhcccccCCCeEEeeCCCC-ccchhhhhhhcCCCCCCcccCcccceEecCC----
Confidence 45778899999999999999999999 9999988 8 8899999999999999999999999999766
Q ss_pred CcceEeccchHHHHHHHhcCC---CCce--EEEeeeEEEeCC-CCCCCcceeEEEEEEEcC-------------------
Q psy9576 168 NKPLLRTHTSPMQIRYSKINK---PPIK--VITSGRVYRIDS-DSTHSPMFHQIEGLWIDK------------------- 222 (338)
Q Consensus 168 ~~~~LRt~lsp~~l~~l~~~~---~pir--ifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~------------------- 222 (338)
.+||||||++|+++|+++. +|++ ++.+|+|||+|. |+||+|+|||+||+++++
T Consensus 108 --~lLRTHTSa~q~~~~~~~~~~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG~~v~~~~~~~~~~~~~~~~~~~~~ 185 (460)
T TIGR00469 108 --HLLRAHTSAHELECFQGGLDDSDNIKSGFLISADVYRRDEIDKTHYPVFHQADGAAIRKRTKADLFEKEPGYIEKFEE 185 (460)
T ss_pred --ceeCCCCcHHHHHHHHhccccCCCcceeeEeecceeeCCCCccccCccceeeEEEEEeccccccccccccchhhhhhh
Confidence 7999999999999998643 7888 999999999995 999999999999999986
Q ss_pred ------------C--CC-----------------H---------HHHHHHHHHHHHHhccCCCe---------------e
Q psy9576 223 ------------N--IS-----------------F---------SDLKGVYLNFIRVFFESDNI---------------Q 247 (338)
Q Consensus 223 ------------~--~~-----------------f---------~dLKg~l~~ll~~lfg~~~~---------------~ 247 (338)
+ ++ | .|||++|+.|++.+||. .. +
T Consensus 186 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~LK~~L~~~~~~lFg~-~~~~~~~~~~~~~~~~~~ 264 (460)
T TIGR00469 186 DIRGTEADLNKENVKIILDDDSIPLKENNPKQEYASDLAVDLCEHELKHSIEGITKDLFGK-KISSMIKNKANNTPKELK 264 (460)
T ss_pred hhhhccccccccCcceeccCcccccccccchhhhccHHHHHHHHHHHHHHHHHHHHHHhch-hhhhhccccccccCccce
Confidence 2 33 5 89999999999999995 45 8
Q ss_pred EEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHcCCCcccccc
Q psy9576 248 IRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFY 327 (338)
Q Consensus 248 ~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~~i~diR~~~ 327 (338)
+||+|+|||||+||+|++|.| +++|+||||||||||+||+++|++++.|.|||||||||||||++|||+|||+||
T Consensus 265 ~r~~ps~fPftePs~evdi~~-----~g~WiEi~gcG~v~p~vl~~~g~~~~~~~g~AfGiGleRlaMl~~gi~DiR~~~ 339 (460)
T TIGR00469 265 VRWIDAYFPFTAPSWEIEIWF-----KDEWLELCGCGIIRHDILLRAGVHPSETIGWAFGLGLDRIAMLLFDIPDIRLFW 339 (460)
T ss_pred EEEEeccCCCCCcceEEEEEE-----CCeeEEEeeeccCcHHHHHHcCCCccceEEEEEEecHHHHHHHHcCccHHHHHh
Confidence 999999999999999999999 456999999999999999999999998999999999999999999999999999
Q ss_pred cCChhhhccC
Q psy9576 328 KGNINFLKQF 337 (338)
Q Consensus 328 ~~d~rfl~qf 337 (338)
+||+|||+||
T Consensus 340 ~~d~rfl~qf 349 (460)
T TIGR00469 340 SNDEGFLRQF 349 (460)
T ss_pred cccHHHHHhh
Confidence 9999999999
|
Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species. |
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-64 Score=500.42 Aligned_cols=235 Identities=34% Similarity=0.619 Sum_probs=215.4
Q ss_pred cCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeC-CccccchhhhhhcCCCCCCCCCcCccceeecCCccC---
Q psy9576 91 KIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDG-PEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS--- 166 (338)
Q Consensus 91 ~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~-~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~--- 166 (338)
.+++++|+.....|+.||+++++++||++|.+|||+|+.+ +.++++++|||+||+|++||||++||||||++|...
T Consensus 213 ~yn~~~~~~~~~~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~ 292 (494)
T PTZ00326 213 EYNFNALGKKIGGGNLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVN 292 (494)
T ss_pred cceecCCCCCCCCCCCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccc
Confidence 4788999988999999999999999999999999999965 599999999999999999999999999999875311
Q ss_pred --------------------------------CCcceEeccchHHHHHHHhcC-------C--CCceEEEeeeEEEeC-C
Q psy9576 167 --------------------------------NNKPLLRTHTSPMQIRYSKIN-------K--PPIKVITSGRVYRID-S 204 (338)
Q Consensus 167 --------------------------------~~~~~LRt~lsp~~l~~l~~~-------~--~pirifeiG~Vyr~d-~ 204 (338)
....+||||||++++|.|.++ . +|+|+|++|+|||+| .
T Consensus 293 ~~p~~~~~~Vk~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~ 372 (494)
T PTZ00326 293 DLDDDYVERVKKVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETL 372 (494)
T ss_pred cCcHHHHHHHHHHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCC
Confidence 135799999999999999753 2 699999999999999 5
Q ss_pred CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeee
Q psy9576 205 DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAG 284 (338)
Q Consensus 205 d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G 284 (338)
|+||+++|||++|+++|+++++.+|++++..|++++ |. .++||+|+|||||+||+|++++|. . .++|+|||+||
T Consensus 373 DatH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~l-G~--~~~RfrP~yfPfTEPS~Ev~v~~~--~-~gkWIEIgg~G 446 (494)
T PTZ00326 373 DATHLAEFHQVEGFVIDRNLTLGDLIGTIREFFRRI-GI--TKLRFKPAFNPYTEPSMEIFGYHP--G-LKKWVEVGNSG 446 (494)
T ss_pred CCCcCceeEEEEEEEEeCCCCHHHHHHHHHHHHHhc-CC--CceEEecCCCCCCCCeeEEEEEec--C-CCcEEEEeCcC
Confidence 999999999999999999999999999999999999 84 689999999999999999999982 1 23499999999
Q ss_pred ecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHcCCCcccccccCChh
Q psy9576 285 QVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNIN 332 (338)
Q Consensus 285 ~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~~d~r 332 (338)
++||+||+++|+ |++++|+||||||||+||++|||+|||+||++|+.
T Consensus 447 m~rpevL~~~Gi-~~~~~~~A~GlGleRlaMi~ygi~DIR~l~~~~v~ 493 (494)
T PTZ00326 447 IFRPEMLRPMGF-PEDVTVIAWGLSLERPTMIKYGIKNIRDLFGHKVD 493 (494)
T ss_pred ccCHHHHHhcCC-CCcceEEEEEecHHHHHHHHhCCcHHHHHhccCCC
Confidence 999999999999 46799999999999999999999999999999974
|
|
| >PLN02788 phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-64 Score=487.05 Aligned_cols=228 Identities=35% Similarity=0.623 Sum_probs=211.8
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHhhC---CCeEeeC-CccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCc
Q psy9576 94 ITLPGRGKNKGGLHPIMRTLERIEKIFYSI---GFDITDG-PEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNK 169 (338)
Q Consensus 94 ~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~---GF~Ev~~-~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~ 169 (338)
++..++....|..||++.+.++|+++|.+| ||+++.+ ++++++++|||+||+|+|||||+++|||||++.
T Consensus 55 ~~~~~~~l~~~~~HPl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~~~------ 128 (402)
T PLN02788 55 FSKIGMQLHRRPDHPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVDAQ------ 128 (402)
T ss_pred hccCCccCCCCCCChHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEecCC------
Confidence 345667889999999999999999999998 9999987 889999999999999999999999999999765
Q ss_pred ceEeccchHHHHHHHhcCCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEc-------C-----CCCHHHHHHHHHHH
Q psy9576 170 PLLRTHTSPMQIRYSKINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWID-------K-----NISFSDLKGVYLNF 236 (338)
Q Consensus 170 ~~LRt~lsp~~l~~l~~~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g-------~-----~~~f~dLKg~l~~l 236 (338)
.+||||||++|++.|.++.+ ++|.+|+|||+|. |+||+|+|||+||++++ + ++++.||||+|+.+
T Consensus 129 ~lLRTHTSa~q~~~l~~~~~--~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l 206 (402)
T PLN02788 129 TVLRCHTSAHQAELLRAGHT--HFLVTGDVYRRDSIDATHYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGL 206 (402)
T ss_pred ccccCCCcHHHHHHHHhCCC--cEEEEeeEeecCCCCcccCccceeEEEEEEecccccccccccccccCHHHHHHHHHHH
Confidence 79999999999999987543 9999999999995 99999999999999996 2 38999999999999
Q ss_pred HHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHH
Q psy9576 237 IRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTML 316 (338)
Q Consensus 237 l~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~ 316 (338)
++.+||. .+++|+|+||||||||+|++|+| +++|+|++|||+|||+|++++|++++ +|||||||||||+|+
T Consensus 207 ~~~lfg~--~~~r~~~s~fPft~Ps~e~dI~~-----~g~WlEvlG~G~vhP~Vl~~~gi~~~--~g~AfglgLeRLaml 277 (402)
T PLN02788 207 ARHLFGD--VEMRWVDAYFPFTNPSFELEIFF-----KGEWLEVLGCGVTEQEILKNNGRSDN--VAWAFGLGLERLAMV 277 (402)
T ss_pred HHHhcCC--CceEEecCCCCCCCCCeEEEEEE-----CCEEEEEeeEEEEcHHHHHHcCCCCC--cEEEEEEeHHHHHHh
Confidence 9999995 67899999999999999999998 45699999999999999999999842 799999999999999
Q ss_pred HcCCCcccccccCChhhhccCC
Q psy9576 317 RYGIDDLRLFYKGNINFLKQFT 338 (338)
Q Consensus 317 ~~~i~diR~~~~~d~rfl~qf~ 338 (338)
+|||+|||+||++|+|||+||.
T Consensus 278 ~~~I~DIRlf~~~D~rfl~Qf~ 299 (402)
T PLN02788 278 LFDIPDIRLFWSDDERFTSQFK 299 (402)
T ss_pred hcCCchhhhhhcccHHHHHhcc
Confidence 9999999999999999999994
|
|
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=429.94 Aligned_cols=237 Identities=39% Similarity=0.745 Sum_probs=218.9
Q ss_pred cCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCcc-----
Q psy9576 91 KIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV----- 165 (338)
Q Consensus 91 ~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~----- 165 (338)
.+|++.|+.....|..||.+++.+.+|++|.++||+|+.+|.++++++|||+|++|.+||||+++||||+..|..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~ 296 (489)
T PRK04172 217 PYNVKAPPPKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPE 296 (489)
T ss_pred cceeCCCCCCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcH
Confidence 478999998899999999999999999999999999999999999999999999999999999999999986520
Q ss_pred ----------------------------CCCcceEeccchHHHHHHHhc-CCCCceEEEeeeEEEeCC-CCCCCcceeEE
Q psy9576 166 ----------------------------SNNKPLLRTHTSPMQIRYSKI-NKPPIKVITSGRVYRIDS-DSTHSPMFHQI 215 (338)
Q Consensus 166 ----------------------------~~~~~~LRt~lsp~~l~~l~~-~~~pirifeiG~Vyr~d~-d~th~~~f~ql 215 (338)
.....+||||++|+++|.+.. +..|+|+||+|+|||++. +++|.++|||+
T Consensus 297 ~~~~~v~~~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql 376 (489)
T PRK04172 297 ELVERVKEVHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTIDATHLPEFYQL 376 (489)
T ss_pred HHHHHHHHHHhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCCCcccCCchheE
Confidence 012359999999999999874 578999999999999994 88999999999
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCC
Q psy9576 216 EGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMN 295 (338)
Q Consensus 216 ~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~g 295 (338)
+++++|.+++|+++||+++.+++.+ |. .+++|+|+++||+|||++++|++ . +.||.+||+||++||+|++++|
T Consensus 377 ~~~i~G~~~~f~elkg~l~~ll~~l-Gi--~~~~~~~~~~p~~~P~~~~~i~~---~-g~~w~eiG~~G~l~Pevl~~~g 449 (489)
T PRK04172 377 EGIVMGEDVSFRDLLGILKEFYKRL-GF--EEVKFRPAYFPFTEPSVEVEVYH---E-GLGWVELGGAGIFRPEVLEPLG 449 (489)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHh-CC--ceEEEcCCcCCCCCCeEEEEEEE---C-CCCeEEEEeccccCHHHHHHCC
Confidence 9999999999999999999999999 85 46899999999999999999987 1 3469999999999999999999
Q ss_pred CCCCCeEEEEEeechhHHHHHHcCCCcccccccCChhhhccC
Q psy9576 296 LDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337 (338)
Q Consensus 296 i~~~~~~~~afelglerlam~~~~i~diR~~~~~d~rfl~qf 337 (338)
++ .+|+|||||+|||+|++|||+|||+||++|++||+|.
T Consensus 450 i~---~~v~~~el~le~l~m~~~~~~dir~l~~~d~~~~~~~ 488 (489)
T PRK04172 450 ID---VPVLAWGLGIERLAMLRLGLDDIRDLYSSDIEWLRER 488 (489)
T ss_pred CC---CceEEEEEcHHHHHHHHhCCcHHHHHHhcChHHHhcC
Confidence 97 7899999999999999999999999999999999985
|
|
| >TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=394.08 Aligned_cols=254 Identities=26% Similarity=0.444 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhh
Q psy9576 61 NSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNF 140 (338)
Q Consensus 61 n~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf 140 (338)
...+++++.+|.+-+..++... ++-..|......|+.||+..+++++|+...+|||.|+++|.+.++.+.+
T Consensus 10 ~~~~~dfe~aw~~~~~~~~~~~---------~~~~ypr~~~~~gk~hpv~~ti~~lreayl~~gf~e~~np~iv~e~~v~ 80 (533)
T TIGR00470 10 ELAEKDFETAWRETRALLKDKH---------IDNKYPRLKFVYGKPHPLMETIERLREAYLRMGFSEMVNPLIVDEMHIY 80 (533)
T ss_pred HHHHhhHHHHHHhCcccccCCC---------ccccCCcccccCCCCCcHHHHHHHHHHHHHhcChHhhcCceeecHHHHH
Confidence 3457788899988877766544 5556888899999999999999999999999999999999999886655
Q ss_pred hh-----------------cCCCCCCCCC-----------cCc-------------------------------------
Q psy9576 141 TA-----------------LNSPKNHPAR-----------SMH------------------------------------- 155 (338)
Q Consensus 141 ~~-----------------L~~p~~hpar-----------~~~------------------------------------- 155 (338)
.. |..|.-.-++ +..
T Consensus 81 kqfg~ea~avldrcfyl~glprp~vgis~~~~~~i~~~g~~~~~~~~e~lr~~lh~ykkg~idgddl~~eia~~l~~~d~ 160 (533)
T TIGR00470 81 KQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKIEIIENLGIDIDDEKKERLREVFHLYKKGAIDGDDLVFEIAKALNVSNE 160 (533)
T ss_pred HhhCHHHHHHHHHhhhhcCCCCCCcCcCHHHHHHHHHhCCCCChhHHHHHHHHHHHhhcCCCccchhHHHHHHhhCCchH
Confidence 21 1222111100 000
Q ss_pred ------cceee----cCCccCCCcceEeccchHHHHHHHh----cCCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEE
Q psy9576 156 ------DTFYI----KNRYVSNNKPLLRTHTSPMQIRYSK----INKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLW 219 (338)
Q Consensus 156 ------dt~~i----~np~~~~~~~~LRt~lsp~~l~~l~----~~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~ 219 (338)
|.++- ..| .+...+|||||||+|+++|+ ++.+|+|+|++|+|||+| . |+||+++|||++|++
T Consensus 161 ~~~~ild~vfpefk~l~p--~s~~~lLRTHTTpgqirtL~~L~~~~~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLV 238 (533)
T TIGR00470 161 MGLKVLETVFPEFKDLKP--ESTTLTLRSHMTSGWFITLSSIIDKRKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVV 238 (533)
T ss_pred HHHHHHHHhChhhhhcCh--HhhCcccccCChhHHHHHHHHHhhcCCCCeEEEeeeeEEecCCCCCCccCceeeeEEEEE
Confidence 00000 000 15668999999999999997 456899999999999999 4 899999999999999
Q ss_pred EcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccC------CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhh
Q psy9576 220 IDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPS------YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCN 293 (338)
Q Consensus 220 ~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps------~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~ 293 (338)
+|+++||.||||+++.|++++ |. .++||+|+ |||||+ +|+++.| .+ .+||+|||+|||+||+||++
T Consensus 239 VdedVSf~DLKgvLe~LLr~L-G~--~~vRFRPsekrskyYFPFTE--aEVdV~~--~k-~~gWiEIgG~GmVhPeVL~~ 310 (533)
T TIGR00470 239 VDEEVSVDDGKAVAEGLLAQF-GF--TKFRFRPDEKKSKYYIPETQ--TEVYAYH--PK-LGEWIEVATFGVYSPIALAK 310 (533)
T ss_pred ECCCCCHHHHHHHHHHHHHHh-CC--ceEEeccCcCCCCCcCCCce--EEEEEEc--cC-CCceEEEEeccccCHHHHHH
Confidence 999999999999999999999 94 67999999 999999 7888876 34 45899999999999999999
Q ss_pred CCCCCCCeEEEEEeechhHHHHHHcCCCcccc-----ccc----CChhhhcc
Q psy9576 294 MNLDPEKYIGFAFGSGLERLTMLRYGIDDLRL-----FYK----GNINFLKQ 336 (338)
Q Consensus 294 ~gi~~~~~~~~afelglerlam~~~~i~diR~-----~~~----~d~rfl~q 336 (338)
+||+ +|++|||||+|||||++|||+|||+ ||. .|..+++.
T Consensus 311 ~GId---~PV~AFGIGVERlAMi~ygi~DIR~l~~pql~~~~~~sd~~~~~~ 359 (533)
T TIGR00470 311 YNID---VPVMNLGLGVERLAMILYGYEDVRAMVYPQIYGEYRLSDRDIAGM 359 (533)
T ss_pred cCCC---CceEEEEecHHHHHHHHhCCcHHHhhcccccccccccchHHHHhh
Confidence 9998 6789999999999999999999999 786 78887764
|
This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys. |
| >cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=331.91 Aligned_cols=215 Identities=56% Similarity=0.980 Sum_probs=193.2
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
||++++.+.||++|+++||+|+.++++++...++++++.+.+||.+.+.+.++|.||. +++||||++|++++++++
T Consensus 1 ~~~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~----~~~LR~sLlp~LL~~l~~ 76 (218)
T cd00496 1 HPLNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA----RLLLRTHTSAVQARALAK 76 (218)
T ss_pred ChHHHHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc----eEEEeccCcHHHHHHHHh
Confidence 7899999999999999999999999998876678999888888888887889999994 689999999999999988
Q ss_pred CCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhcc--CCCeeEEEccCCCCCCCCceE
Q psy9576 187 NKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE--SDNIQIRFRPSYFPFTEPSAE 263 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg--~~~~~~r~~ps~fpf~~Ps~e 263 (338)
+..|+|+||+|+||+++. +.+|.|++++++++++|..++|+++||+++.+++.+ | . ..++|.++..|+.||+.+
T Consensus 77 N~~~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l-~~~~--~~~~~~~~~~~~~hp~~s 153 (218)
T cd00496 77 LKPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKEL-FGPI--TKVRFRPSYFPFTEPSFE 153 (218)
T ss_pred cCCCeeEEEEcCeEECCCCCCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHh-cCCC--ceeEecCCcCCCCCCcEE
Confidence 777999999999999984 567888999999999999999999999999999998 7 3 246788899998899999
Q ss_pred EEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHcCCCcccccccCChh
Q psy9576 264 IDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNIN 332 (338)
Q Consensus 264 ~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~~d~r 332 (338)
++|++ +|. .+|.+||.+|+|||+|++++||+ +++++++|||++|+|+|++|||+|||+||++|+|
T Consensus 154 a~i~~-~g~--~~~~~iG~~G~lhP~vl~~~~i~-~~~~v~~~Eidl~~l~~~~~~~~~~~~~~~~~~~ 218 (218)
T cd00496 154 VDVYC-PGC--LGWLEILGCGMVRPEVLENAGID-EEYSGFAFGIGLERLAMLKYGIPDIRLFYSNDLR 218 (218)
T ss_pred EEEEe-CCC--CCeEEEEecccccHHHHHHCCCC-CCceEEEEEecHHHHHHHHhCCcHHHHHhhcCCC
Confidence 99987 221 25778999999999999999992 2389999999999999999999999999999986
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. |
| >KOG2784|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=335.00 Aligned_cols=229 Identities=37% Similarity=0.661 Sum_probs=206.5
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEe-eCCccccchhhhhhcCCCCCCCCCcCccceeecCCccC------
Q psy9576 94 ITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDIT-DGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS------ 166 (338)
Q Consensus 94 ~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev-~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~------ 166 (338)
...-|..+..|.+||+.++..+.|+||..|||+|+ .+..+++.++|||+|..|..||||+.+|||++.+|..+
T Consensus 199 F~a~G~~p~~G~lHPLmKvR~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~d 278 (483)
T KOG2784|consen 199 FNAEGVPPSSGHLHPLMKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPED 278 (483)
T ss_pred cccCCCCCCCCccchHHHHHHHHHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHH
Confidence 33445678899999999999999999999999999 88889999999999999999999999999999988532
Q ss_pred ---------------------------CCcceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeC-CCCCCCcceeE
Q psy9576 167 ---------------------------NNKPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRID-SDSTHSPMFHQ 214 (338)
Q Consensus 167 ---------------------------~~~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d-~d~th~~~f~q 214 (338)
....+|||||+.+..|.|.+ ...|.|+|+|.+|||++ .|+||+.+|||
T Consensus 279 Y~~rVk~vH~~G~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQ 358 (483)
T KOG2784|consen 279 YLERVKAVHEQGGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETVDATHLAEFHQ 358 (483)
T ss_pred HHHHHHHHHhcCCcCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhccccchHHHHHHhh
Confidence 45579999999998887733 35799999999999999 59999999999
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhC
Q psy9576 215 IEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNM 294 (338)
Q Consensus 215 l~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~ 294 (338)
++|+++|+++++.||.|++..|+..+ |. ...||.|.|.||||||.++..+. +| -..|+|||-.|+.||+.+..+
T Consensus 359 VEGviad~gltLgdLig~l~~ff~~l-g~--tnlrfKPaynpYtepsmeif~yh-~g--l~kwvEvgnSg~frPeml~pM 432 (483)
T KOG2784|consen 359 VEGVIADKGLTLGDLIGILMEFFTKL-GA--TNLRFKPAYNPYTEPSMEIFSYH-HG--LFKWVEVGNSGMFRPEMLLPM 432 (483)
T ss_pred hceeeecCCCcHHHHHHHHHHHHhcc-CC--ccccccCCCCCCCCceeEEEEec-cc--cceEEEEcCCCCCCHhHhhcc
Confidence 99999999999999999999999999 85 78999999999999999998764 22 246999999999999999999
Q ss_pred CCCCCCeEEEEEeechhHHHHHHcCCCcccccccC
Q psy9576 295 NLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKG 329 (338)
Q Consensus 295 gi~~~~~~~~afelglerlam~~~~i~diR~~~~~ 329 (338)
|++ ....+.++|+.+||-.|++|||.+||.+..-
T Consensus 433 GLp-~Dv~vl~~glslErptmIkyg~~nir~l~gh 466 (483)
T KOG2784|consen 433 GLP-MDVVVLAWGLSLERPTMIKYGIQNIRWLKGH 466 (483)
T ss_pred CCC-ccceeeeecccccCchhhhhhhcchHHhhcc
Confidence 986 5688999999999999999999999998765
|
|
| >KOG2783|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=303.98 Aligned_cols=224 Identities=41% Similarity=0.699 Sum_probs=194.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhhCC---CeEe--eCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceE
Q psy9576 98 GRGKNKGGLHPIMRTLERIEKIFYSIG---FDIT--DGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLL 172 (338)
Q Consensus 98 ~~~~~~G~~hp~~~~~~~Ir~~~~~~G---F~Ev--~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~L 172 (338)
++....-..||+..+.+.|.+.|...| |+.. .+| +++.+.|||.|.+|.+|+.|...||+|+++. .+|
T Consensus 63 gr~lh~~~~hplg~lr~~i~~~f~~~~~~~fs~~~~~sp-vvt~~qnfdsl~~p~dh~sr~ksdtyy~n~~------~~l 135 (436)
T KOG2783|consen 63 GRNLHQKESHPLGILRQRIEDYFYKTYRNLFSIFENESP-VVTTYQNFDSLLFPADHVSRSKSDTYYVNHT------HCL 135 (436)
T ss_pred ccchhhhccCchhHHHHHHHHHHHHhhcccchhccCCCc-eeehhhhcccccCcccccccCcCCceeecce------eee
Confidence 344555678999999999999998766 4655 344 4466789999999999999999999999887 899
Q ss_pred eccchHHHHHHHhcCCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCC-------------------CC-------
Q psy9576 173 RTHTSPMQIRYSKINKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKN-------------------IS------- 225 (338)
Q Consensus 173 Rt~lsp~~l~~l~~~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~-------------------~~------- 225 (338)
|+||+.++.+.++.... ..--+|+|||+| .|.||+|.|||++++..-.. .+
T Consensus 136 r~htsahq~e~~~~~~~--~flv~~DVyrrdeidsthypvfhq~eg~~~~s~~~l~~~~~d~~~ve~~~~~s~~~~~~~~ 213 (436)
T KOG2783|consen 136 RAHTSAHQHELFQKGLD--GFLVTGDVYRRDEIDSTHYPVFHQMEGVRLWSKDELFGKKPDGKNVAELFSGSSATLRSPN 213 (436)
T ss_pred hhcchhhHHHHHHhccc--ccceeeeeeeeccccccccceeccccceeEEecchhhcccccccceecccccccccccccc
Confidence 99999999999987643 334499999999 59999999999999876320 01
Q ss_pred -------------HHHHHHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhh
Q psy9576 226 -------------FSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLC 292 (338)
Q Consensus 226 -------------f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~ 292 (338)
=.++|-.++.++..+||. ..++|+...|||||+||.|+.|+. .+.|+|+.|||.+.-.+++
T Consensus 214 kq~~~t~e~~~~~~~~lk~~l~~L~~~Lf~~-~~~~rwV~~yfpft~ps~eleI~~-----~~~wlevlgcgvi~~~il~ 287 (436)
T KOG2783|consen 214 KQEKHTLEATKLAEQHLKQTLEGLCDELFGK-EVEYRWVDAYFPFTHPSWELEIYF-----KGEWLEVLGCGVMRQRLLK 287 (436)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhccc-hhheeheeeEcccCCCCeEEEEEe-----cCCcHhhhccchhHHHHHh
Confidence 147899999999999996 678999999999999999999988 5669999999999999999
Q ss_pred hCCCCCCCeEEEEEeechhHHHHHHcCCCcccccccCChhhhccCC
Q psy9576 293 NMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQFT 338 (338)
Q Consensus 293 ~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~~d~rfl~qf~ 338 (338)
..|+. .+-+||||||||||||+.|+|+|||+||++|-|||+||.
T Consensus 288 ~ag~~--~~igwafglgLerLAMll~~IpDiRlfWs~DeRFlkqF~ 331 (436)
T KOG2783|consen 288 RAGLN--NYIGWAFGLGLERLAMLLFDIPDIRLFWSFDERFLKQFS 331 (436)
T ss_pred hcccc--ceeeeeeeccHHHHHHHHhcCcchheeeccchHHHHhcC
Confidence 99997 589999999999999999999999999999999999994
|
|
| >TIGR02367 PylS pyrrolysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=284.72 Aligned_cols=213 Identities=16% Similarity=0.198 Sum_probs=177.4
Q ss_pred ccccCCCCCCC-------CCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceee
Q psy9576 88 KTNKIDITLPG-------RGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYI 160 (338)
Q Consensus 88 ~~~~id~tlp~-------~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i 160 (338)
.-+++...+|. ...+.|+.||++.+.+.||++|.++||+|+.+|.++++ ..++.|+.+.++.. ..+.|++
T Consensus 214 gf~~~ep~lP~~~~~~~~~~~TiG~~~~~~~Led~IRevfvg~GFqEV~TPtLt~e-E~~E~m~~~~g~eI--~n~Iyk~ 290 (453)
T TIGR02367 214 PFRELEPELLSRRKKDFQQIYAEDREDYLGKLERDITKFFVDRGFLEIKSPILIPA-EYIERMGIDNDTEL--SKQIFRV 290 (453)
T ss_pred cccccCcccCcccccccccccccCcccHHHHHHHHHHHHHHHCCCEEEECCeecch-HHHHhhcCccCCcc--cccceEe
Confidence 34567788893 46899999999999999999999999999999999854 45788887654322 2234444
Q ss_pred cCCccCCCcceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHH
Q psy9576 161 KNRYVSNNKPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLN 235 (338)
Q Consensus 161 ~np~~~~~~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ 235 (338)
. ++.+||++++|++++.+.. ...|+|+||+|+|||.| .+.+|..+|+|+++.++|.+.+|.|+++++..
T Consensus 291 e------e~lvLRPdLTPsLaR~La~N~~~l~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~atfaDlealL~e 364 (453)
T TIGR02367 291 D------KNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLEAIIKD 364 (453)
T ss_pred c------CceEecccCHHHHHHHHHHhhhhccCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCCHHHHHHHHHH
Confidence 3 3489999999999998854 25699999999999999 58999999999999999999999999999999
Q ss_pred HHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeE--eeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 236 FIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEI--SGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 236 ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwiei--g~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
+++.+ |. .+++.. .|...|+..++|. .||+|| |++|++|| |.+|||+ +|+.|||||||||
T Consensus 365 ~Lr~L-GI---dfeitE--~s~FI~GR~A~I~-------~G~~Ev~~GvfGEihp--L~~fGIe---~PVvAfEI~LeRL 426 (453)
T TIGR02367 365 FLDHL-EI---DFEIVG--DSCMVYGDTLDIM-------HGDLELSSAVVGPIPL--DREWGID---KPWIGAGFGLERL 426 (453)
T ss_pred HHHHC-CC---ceEEeC--CCceEecceeeee-------cCCEEEeeEEEeeccc--ccccCCC---CccEEEEeehhHH
Confidence 99998 85 344432 2444566666764 368888 99999996 9999997 8999999999999
Q ss_pred HHHHcCCCcccccc
Q psy9576 314 TMLRYGIDDLRLFY 327 (338)
Q Consensus 314 am~~~~i~diR~~~ 327 (338)
+|++||++|||++-
T Consensus 427 am~~~g~~dir~~~ 440 (453)
T TIGR02367 427 LKVKHDFKNIKRAA 440 (453)
T ss_pred HHHHhCcHHHHHHH
Confidence 99999999999874
|
PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase. |
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=277.20 Aligned_cols=205 Identities=24% Similarity=0.329 Sum_probs=179.3
Q ss_pred ccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCC
Q psy9576 88 KTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN 167 (338)
Q Consensus 88 ~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~ 167 (338)
--++|+.++|. ..+.|..++.+++.+++|++|+++||+|+.++++++...|++.++++.+| +.+.|.||. ++
T Consensus 341 Gyd~i~~~~p~-~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~------~~i~l~NPl-s~ 412 (552)
T PRK09616 341 GYNNLEPELPK-VFTIGRLHPIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEE------DYVEVLNPI-SE 412 (552)
T ss_pred CcccCCccCCC-CccCCCCChHHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCC------CeEEEcCCC-cc
Confidence 34678888887 56678999999999999999999999999999999987779999887654 248899996 89
Q ss_pred CcceEeccchHHHHHHHhcC---CCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccC
Q psy9576 168 NKPLLRTHTSPMQIRYSKIN---KPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 168 ~~~~LRt~lsp~~l~~l~~~---~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~ 243 (338)
++++||||++|+++++++.+ ..|+|+||+|+||+++. +.++..++++++++++|..++|+++||+|+.++..+ |.
T Consensus 413 e~svLRtsLlpgLL~~~~~N~~~~~~~~lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~l-gi 491 (552)
T PRK09616 413 DYTVVRTSLLPSLLEFLSNNKHREYPQKIFEIGDVVLIDESTETGTRTERKLAAAIAHSEASFTEIKSVVQALLREL-GI 491 (552)
T ss_pred chheEeccchHHHHHHHHhccCCCCCeeEEEeeEEEecCCccccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHHc-CC
Confidence 99999999999999999753 46899999999999873 445777889999999999999999999999999987 84
Q ss_pred CCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHH
Q psy9576 244 DNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLT 314 (338)
Q Consensus 244 ~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerla 314 (338)
++.|.++.+|+.||+.+++|++ ++ -+||++|+|||+|++++|++ .++++|||+++.|.
T Consensus 492 ---~~~~~~~~~~~~hPg~sa~I~~-----~g--~~iG~iG~lhP~v~~~~~i~---~~v~~~Eidl~~l~ 549 (552)
T PRK09616 492 ---EYEVEESEHPSFIPGRCADILV-----NG--KKIGVIGEIHPEVLENFGIE---VPVVAFEIDLEALL 549 (552)
T ss_pred ---eEEEecCCCCcccCCceEEEEE-----CC--EEEEEEEEECHHHHHhcCCC---CceEEEEEEHHHhh
Confidence 4678899999889999999987 22 27999999999999999997 78999999999874
|
|
| >PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=271.46 Aligned_cols=247 Identities=21% Similarity=0.390 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhh
Q psy9576 62 SIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFT 141 (338)
Q Consensus 62 ~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~ 141 (338)
..+++++.+|.+-+..++... ++-..|......|+.||+..+++++|+...+|||.|+++|.+.++.+.+.
T Consensus 11 ~~~~df~~aw~~~~~~~~~~~---------~~~~yp~~~~~~~~~hp~~~ti~~lr~ayl~~gf~e~~np~iv~~~~~~~ 81 (529)
T PRK06253 11 LAKKDFEKAWKEGKKLIKPPG---------LNERYPRLKPSYGKPHPVYDTIERLREAYLRMGFEEMINPVIVDEQDIYK 81 (529)
T ss_pred HHHhhHHHHHHhCcccccCCC---------ccccCCcccccCCCCCcHHHHHHHHHHHHHhcChHhhcCceeecHHHHHH
Confidence 457788999988877776544 45558888999999999999999999999999999999999998866552
Q ss_pred h-----------------cCCCCCCCCCc---------------------------------------------------
Q psy9576 142 A-----------------LNSPKNHPARS--------------------------------------------------- 153 (338)
Q Consensus 142 ~-----------------L~~p~~hpar~--------------------------------------------------- 153 (338)
. |..|.-.-++.
T Consensus 82 qfg~ea~avldr~fyl~glprp~vg~~~~~~~~i~~~~~~~~~~~~~e~l~~~lh~ykkg~~~gddl~~e~~~~l~~~~~ 161 (529)
T PRK06253 82 QFGPEAMAVLDRCFYLAGLPRPNVGISDEKIEQIEEILGRDLSEEKIESLREVLHSYKKGEIDGDDLVLEISKALEVSDE 161 (529)
T ss_pred hhCHHHHHHHHHhhhhcCCCCCCCCcCHHHHHHHHHHhCCCCChhHHHHHHHHHHHhhcCCCccchhHHHHHHhcCCChH
Confidence 1 11121110000
Q ss_pred ----Cccceee----cCCccCCCcceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeCC--CCCCCcceeEEEEEE
Q psy9576 154 ----MHDTFYI----KNRYVSNNKPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRIDS--DSTHSPMFHQIEGLW 219 (338)
Q Consensus 154 ----~~dt~~i----~np~~~~~~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d~--d~th~~~f~ql~~l~ 219 (338)
+-|.++- ..| ...+++||||++|+++.+++. +..|+++||+|+||+++. +.+|...+++..++.
T Consensus 162 ~~~~~l~~vfpe~k~l~p--~~~~svLRtSLlPGLL~tLs~Nl~Rg~~piRLFEIGRVFr~d~~eE~t~La~llsGs~W~ 239 (529)
T PRK06253 162 MVLKILDEVFPEFKELKP--ESSRLTLRSHMTSGWFITLSSLLEKRPLPIKLFSIDRCFRREQREDASRLMTYHSASCVI 239 (529)
T ss_pred HHHHHHHHhChHhhhcCC--ccccCccccchHHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCccchhheeEEEEccccc
Confidence 0000000 001 167789999999999999853 467999999999998862 445655555555444
Q ss_pred EcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccC--CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC
Q psy9576 220 IDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPS--YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD 297 (338)
Q Consensus 220 ~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps--~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~ 297 (338)
.+++++|+|+||+++.+++.+ |. .+++|+++ ..|+.||+.++.|.+.+++ ..||.+||.+|+|||.|++++||+
T Consensus 240 ~~e~vDFfDlKGiLE~LL~~L-GI--~~i~f~pse~~~p~fHPGRSAeI~v~hp~-~dGwkeIG~fGELHP~VLk~fDI~ 315 (529)
T PRK06253 240 ADEDVTVDDGKAVAEGLLSQF-GF--TKFKFRPDEKRSKYYTPDTQTEVYAYHPK-LDGWVEVATFGIYSPVALAEYGID 315 (529)
T ss_pred cCCCCCHHHHHHHHHHHHHHc-CC--CeEEEeecccCCCCcCCCeEEEEEEEeec-CCCCEEEEEEEEECHHHHHHcCCC
Confidence 456789999999999999987 85 34678887 5676699988888753333 368999999999999999999998
Q ss_pred CCCeEEEEEeechhHHHHHHcCCCccccc
Q psy9576 298 PEKYIGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 298 ~~~~~~~afelglerlam~~~~i~diR~~ 326 (338)
+++++||||+|+|+|+.++++|||.+
T Consensus 316 ---~pV~aFELDLErL~~i~~~~~dir~~ 341 (529)
T PRK06253 316 ---VPVMNLGLGVERLAMILYGAEDVREM 341 (529)
T ss_pred ---CceEEEEEeHHHHHhhhcCccccccc
Confidence 78999999999999999999999996
|
|
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=257.79 Aligned_cols=200 Identities=18% Similarity=0.205 Sum_probs=167.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHH
Q psy9576 100 GKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPM 179 (338)
Q Consensus 100 ~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~ 179 (338)
..+.|+.||...+.+.||++|.++||+|+.+|.+++.. .|+.++.+.+++.++ +.|++.+ +.+||++++|+
T Consensus 197 ~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee-~~e~~g~~~g~~i~~--~my~ide------el~LRpsLtPs 267 (417)
T PRK09537 197 MYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAE-YIERMGIDNDTELSK--QIFRVDK------NFCLRPMLAPG 267 (417)
T ss_pred hhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHH-HHHHhCCCCcccchh--hheeeCC------ceEehhhhHHH
Confidence 57889999999999999999999999999999998654 588888765543332 3344433 38999999999
Q ss_pred HHHHHhc----CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccCC
Q psy9576 180 QIRYSKI----NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSY 254 (338)
Q Consensus 180 ~l~~l~~----~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~ 254 (338)
+++.+.. ...|+|+||+|+|||++ .+.+|.++|+|+++.++|.+.+|.+++++++.+++.+ |. .++.. .
T Consensus 268 Llr~la~n~k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~~L-GI---~f~i~--s 341 (417)
T PRK09537 268 LYNYLRKLDRILPDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLKHL-GI---DYEII--G 341 (417)
T ss_pred HHHHHHhhhhcccCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHHHC-CC---CcEEe--c
Confidence 9998753 35799999999999999 4789999999999999999999999999999999998 85 33333 3
Q ss_pred CCCCCCceEEEEEeecCCCCCCCeeE--eeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHcCCCccccc
Q psy9576 255 FPFTEPSAEIDIVFQDGPLKGNWLEI--SGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 255 fpf~~Ps~e~~i~~~~g~~~~gwiei--g~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~~i~diR~~ 326 (338)
.+...|+..++|.. ||.|| |++|++| |+++|||+ +|++|||||||||+|++||++|||..
T Consensus 342 ~~~fi~GR~adI~~-------g~~el~~G~fGEi~--VLe~fGI~---~PVva~EIdLerL~~~~~g~~~ir~~ 403 (417)
T PRK09537 342 DNCMVYGDTIDIMH-------GDLELSSAVVGPIP--LDREWGID---KPWIGAGFGLERLLKVKHGYKNIKRA 403 (417)
T ss_pred CCcceecCeEEEEe-------CCEEEeeEEEEEEe--hhhhcCCC---CceEEEEEeHHHHHHHHhCcHHHHHh
Confidence 33445667777753 58788 9999995 99999998 89999999999999999999999975
|
|
| >PLN02265 probable phenylalanyl-tRNA synthetase beta chain | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=263.59 Aligned_cols=207 Identities=20% Similarity=0.246 Sum_probs=173.4
Q ss_pred cccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCC
Q psy9576 89 TNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNN 168 (338)
Q Consensus 89 ~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~ 168 (338)
-++|+.++|.. .+.|..+|.+++.+.+|+.|+++||+|+.++.+++...+|++++.+.+. .+.+.|.||. +++
T Consensus 380 ydni~~~~P~~-~~~g~~~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~-----~~~v~I~NP~-s~e 452 (597)
T PLN02265 380 YNNIPKRKPKS-MTVGKQQPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDG-----NSAVIIGNPR-SAD 452 (597)
T ss_pred cccCCccCCCc-ccCCCCCHHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccC-----CceEEECCCc-chh
Confidence 46788888875 6779999999999999999999999999999999987779998876431 1348899996 899
Q ss_pred cceEeccchHHHHHHHhcC---CCCceEEEeeeEEEeCCC-CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCC
Q psy9576 169 KPLLRTHTSPMQIRYSKIN---KPPIKVITSGRVYRIDSD-STHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESD 244 (338)
Q Consensus 169 ~~~LRt~lsp~~l~~l~~~---~~pirifeiG~Vyr~d~d-~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~ 244 (338)
+++||||++|+++++++.| ..|+|+||+|+||.++.+ .+...+..+++++++|+.++|+++||+|+.+++.+ |..
T Consensus 453 ~~vlRtSLlPgLL~~l~~N~~~~~p~klFEiG~V~~~~~~~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~~l-~i~ 531 (597)
T PLN02265 453 FEVVRTSLLPGLLKTLGHNKDAPKPIKLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVL-GIP 531 (597)
T ss_pred HHHHHHhhHHHHHHHHHHhhcCCCCeeEEEeEeEEecCCcccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHHHc-CCc
Confidence 9999999999999999652 359999999999988732 12224668999999999999999999999999987 851
Q ss_pred Ce------eEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 245 NI------QIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 245 ~~------~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
.. .+.+.++..|+.||+..++|.+ +|+ .||.+|+|||+|+++||++ +|+++|||+++.|
T Consensus 532 ~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~-~g~------~iG~iGelhP~vl~~f~l~---~pv~~~Eidl~~l 596 (597)
T PLN02265 532 FVEIGDNNGYYVEPSNEPEYFPGRQASIIY-KGK------HVGTFGIVHPEVLNNFDIP---DPCSFLELDLEPL 596 (597)
T ss_pred ccccccCceEEEeecCCccccCCceEEEEE-CCe------EEEEEEEECHHHHHHCCCC---CceEEEEEEhHHh
Confidence 01 3444788888779999999987 222 7999999999999999997 8999999999965
|
|
| >TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=258.75 Aligned_cols=203 Identities=22% Similarity=0.321 Sum_probs=171.9
Q ss_pred ccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCC
Q psy9576 88 KTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN 167 (338)
Q Consensus 88 ~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~ 167 (338)
--++|+.++|.. .+.|..++.+.+.+.+|+.|+++||+|+.++++++....|++++++.+ +.+.|.||. ++
T Consensus 344 Gyd~I~~~~p~~-~~~~~~~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~~-------~~v~l~NPi-s~ 414 (551)
T TIGR00471 344 GYNNFPPELPLI-NTIGRLKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDN-------NDVKVANPK-TL 414 (551)
T ss_pred CcccCCccCCCc-cccCCcChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCCC-------CcEEeCCCC-ch
Confidence 346778888875 566899999999999999999999999999999988666788876643 348899996 89
Q ss_pred CcceEeccchHHHHHHHhcC---CCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccC
Q psy9576 168 NKPLLRTHTSPMQIRYSKIN---KPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 168 ~~~~LRt~lsp~~l~~l~~~---~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~ 243 (338)
++++||||++|++++++++| ..|+++||+|+||.++. +..+..++++++++++|..++|+++||+|+.++..+ |.
T Consensus 415 e~s~lR~SLlp~LL~~~~~N~~~~~~~~lFEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~l-~i 493 (551)
T TIGR00471 415 EYTIVRTSLLPGLLETLSENKHHELPQKIFEIGDVVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALAREL-GI 493 (551)
T ss_pred hhhHhHhhhHHHHHHHHHhcccCCCCeeEEEEEEEEEcCCccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc-CC
Confidence 99999999999999999753 56899999999997763 222334458999999998899999999999999988 84
Q ss_pred CCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 244 DNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 244 ~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
.+.|.++..|+.||+..++|++ +|+ .||++|+|||+|+++++++ .|+++|||+++.|
T Consensus 494 ---~~~~~~~~~~~~hpgrsa~I~~-~g~------~iG~iG~ihP~v~~~~~i~---~~v~~~Ei~l~~l 550 (551)
T TIGR00471 494 ---EYEIEESEHPSFIPGRGAKIVF-EGK------AIGHFGEIHPEVLTNFELE---FPVSAFEVNIEVF 550 (551)
T ss_pred ---ceEEeecCCCccCCCceEEEEE-CCc------EEEEEEEECHHHHHhCCCC---CceEEEEEEehhc
Confidence 3678888889779999999987 222 7899999999999999997 7899999999865
|
Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes. |
| >cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-29 Score=222.39 Aligned_cols=181 Identities=18% Similarity=0.296 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc---
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI--- 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~--- 186 (338)
+.+.+.||++|+++||+|+.++.+++.... +.++.+. .+.+.|.||+ ++++++||||++|+++++++.
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~-~~~~~~~-------~~~i~l~NPi-s~e~~~lR~sLlp~LL~~~~~N~~ 73 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEA-ELFDGGL-------DEAVELSNPL-SEEYSVLRTSLLPGLLDALARNLN 73 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHH-HhccCCC-------CCeEEEcCCC-chhHHHHHHHHHHHHHHHHHHHhc
Confidence 567899999999999999999999887443 3443322 1358899996 899999999999999999964
Q ss_pred -CCCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEcCC-----------CCHHHHHHHHHHHHHHhccCCCeeEEEccCC
Q psy9576 187 -NKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKN-----------ISFSDLKGVYLNFIRVFFESDNIQIRFRPSY 254 (338)
Q Consensus 187 -~~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g~~-----------~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~ 254 (338)
+..|+++||+|+||.++.. +..+..+++++++|.. ++|+|+||+++.++..+ |. ...+..+++.
T Consensus 74 ~~~~~~~lFEiG~vf~~~~~--~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l-~~-~~~~~~~~~~ 149 (198)
T cd00769 74 RKNKPLRLFEIGRVFLKDED--GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRAL-GI-IVEFELEELD 149 (198)
T ss_pred CCCCCEeEEEeEeEEecCCC--CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHc-CC-eEEEEecCCC
Confidence 3479999999999977531 3346679999999953 69999999999999988 84 2334344467
Q ss_pred CCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 255 FPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 255 fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
.|+.||+..++|++ ++ ..||.+|+|||+|++++|++ .++++|||++|.|
T Consensus 150 ~~~~hpg~~a~I~~-----~g--~~vG~~G~lhP~v~~~~~l~---~~v~~~Ei~l~~l 198 (198)
T cd00769 150 ADLFHPGRSAKIYV-----NG--EVIGFIGELHPEVLKEFDLK---EPVYAFELDLDAL 198 (198)
T ss_pred CCccCCCceEEEEE-----CC--EEEEEEEeeCHHHHHHcCCC---CceEEEEEecccC
Confidence 77679999999987 22 27999999999999999997 7899999999853
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain. |
| >COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-29 Score=235.04 Aligned_cols=251 Identities=22% Similarity=0.417 Sum_probs=191.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchh
Q psy9576 59 IINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFN 138 (338)
Q Consensus 59 ~~n~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~ 138 (338)
...-++..++.+|.+.++.++ .+.+|-..|...+..|+.||+..++.++|+...+|||+|+.+|.+.++.+
T Consensus 8 i~~la~~dFe~aW~eg~k~v~---------~p~~~~~YPRl~f~~Gk~Hpl~~TIq~lReAYLr~GF~EmvNPlivde~e 78 (536)
T COG2024 8 IRKLAERDFERAWKEGKKLVR---------EPHLDERYPRLKFETGKPHPLYETIQRLREAYLRMGFSEMVNPLIVDEEE 78 (536)
T ss_pred HHHHHHHHHHHHHHhhhhhhc---------CCCccccCCccccccCCcCcHHHHHHHHHHHHHHhhHHHhcCccccCHHH
Confidence 445567788888888776554 34567778999999999999999999999999999999999999988765
Q ss_pred hhhhc---------------CCC--CC-----------------------------------------------------
Q psy9576 139 NFTAL---------------NSP--KN----------------------------------------------------- 148 (338)
Q Consensus 139 nf~~L---------------~~p--~~----------------------------------------------------- 148 (338)
.+... ++| .-
T Consensus 79 vykQFGpEA~AVLDRCFYLagLPrPdVGlg~eki~~i~~i~~d~~de~~e~lrevlh~YKKG~idGDdLv~eIa~aL~v~ 158 (536)
T COG2024 79 VYKQFGPEALAVLDRCFYLAGLPRPDVGLGAEKIEQIEEIGIDEPDEKVERLREVLHAYKKGEIDGDDLVHEIAEALEVD 158 (536)
T ss_pred HHHHhChHHHHHHHHHHHhcCCCCCCcCccHHHHHHHHHhcCCCchhhHHHHHHHHHHHhcCCCCcchhHHHHHHHhccC
Confidence 54211 111 10
Q ss_pred -CCCCcCccceee----cCCccCCCcceEeccchHHHH----HHHhcCCCCceEEEeeeEEEeC--CCCCCCcceeEEEE
Q psy9576 149 -HPARSMHDTFYI----KNRYVSNNKPLLRTHTSPMQI----RYSKINKPPIKVITSGRVYRID--SDSTHSPMFHQIEG 217 (338)
Q Consensus 149 -hpar~~~dt~~i----~np~~~~~~~~LRt~lsp~~l----~~l~~~~~pirifeiG~Vyr~d--~d~th~~~f~ql~~ 217 (338)
|-+..+-|.++- ..| .+....||+|++.+-- ..+.+..+|+++|+|.+|||++ .|++|+..+|...|
T Consensus 159 d~~~~~vle~vFPEfk~Lkp--~s~tlTLRSHMTsGWFItLs~i~~r~~~PlklFSIDRCFRREQ~ED~shLmtYhSASC 236 (536)
T COG2024 159 DGTGLRVLEEVFPEFKDLKP--ESSTLTLRSHMTSGWFITLSEILKREDPPLKLFSIDRCFRREQREDASHLMTYHSASC 236 (536)
T ss_pred cchHHHHHHHhChHHhhcCC--CCCceehhhhcccceeeeHHHHHhccCCCceeeehhHHhhhhhhcchhhhhhhccceE
Confidence 000000011100 011 1455789999776542 2334568999999999999998 49999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccCCCC--CCCCc--eEEEEEee--cC---CCCCCCeeEeeeeecCH
Q psy9576 218 LWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFP--FTEPS--AEIDIVFQ--DG---PLKGNWLEISGAGQVNP 288 (338)
Q Consensus 218 l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fp--f~~Ps--~e~~i~~~--~g---~~~~gwieig~~G~vhP 288 (338)
+++|++++..+.|.+.+.+++++ |. .+++|+|+..- |..|+ -||+-+.. .| +-..||+||..+|...|
T Consensus 237 Vvvde~vtvD~GKaVAEglL~qf-GF--e~F~FrpDEK~SKYYvP~TQTEVyAyHPkL~gs~~kysdgWiEiATFGlYSP 313 (536)
T COG2024 237 VVVDEDVTVDDGKAVAEGLLRQF-GF--EKFRFRPDEKKSKYYVPGTQTEVYAYHPKLVGSIEKYSDGWIEIATFGLYSP 313 (536)
T ss_pred EEEcCcccccccHHHHHHHHHHh-Cc--cceeeccccccccccCCCccceEEEecccccccccccCCCcEEEEeecccCh
Confidence 99999999999999999999998 94 77999997221 34444 34443332 12 21359999999999999
Q ss_pred HHhhhCCCCCCCeEEEEEeechhHHHHHHcCCCccccc
Q psy9576 289 KVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 289 ~Vl~~~gi~~~~~~~~afelglerlam~~~~i~diR~~ 326 (338)
..|..+||| |||+..|+|+|||||+.||++|+|.+
T Consensus 314 ~ALaeY~Id---~pVMNLGlGVERlaMIl~g~~DVR~m 348 (536)
T COG2024 314 IALAEYGID---YPVMNLGLGVERLAMILHGADDVRSM 348 (536)
T ss_pred HHHHHcCCC---CceeecchhHHHHHHHHhCchHHhhh
Confidence 999999999 99999999999999999999999986
|
|
| >PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-25 Score=236.45 Aligned_cols=203 Identities=20% Similarity=0.280 Sum_probs=166.7
Q ss_pred cccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCC
Q psy9576 89 TNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNN 168 (338)
Q Consensus 89 ~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~ 168 (338)
-++|+.++|....+.|..++.+.+.+++|+.|+++||+|+.++.+++..... .++.+. +.+.|.||. +++
T Consensus 469 yd~i~~~~p~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~-~~~~~~--------~~i~l~NPi-s~e 538 (791)
T PRK00629 469 YDNIPSTPPVAALTMGGLTEAQRLLRRLRRALAALGYQEVITYSFVSPEDAK-LFGLNP--------EPLLLLNPI-SEE 538 (791)
T ss_pred cccCcCcCCCcccCCCCCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHHHH-hcCCCC--------CeEEEeCCC-chH
Confidence 4678888886555678999999999999999999999999999998875443 455331 247889996 899
Q ss_pred cceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEcCC----------CCHHHHHHHHH
Q psy9576 169 KPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKN----------ISFSDLKGVYL 234 (338)
Q Consensus 169 ~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g~~----------~~f~dLKg~l~ 234 (338)
+++||||++|+++++++. +..++++||+|+||..+. +...+..+++++++|.. ++|+++||+|+
T Consensus 539 ~~~lR~SLlp~LL~~~~~N~~~~~~~i~lFEiG~Vf~~~~--~~~~e~~~la~~~~g~~~~~~w~~~~~~df~~~Kg~le 616 (791)
T PRK00629 539 LSVMRTSLLPGLLEAVAYNLNRGNKDVALFEIGRVFLPDG--DLPREPEHLAGVLTGNRVEESWGGKRPVDFFDLKGDVE 616 (791)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeeeeeeCCCC--CCCcchhEEEEEEECCCccccccccCCCCHHHHHHHHH
Confidence 999999999999999864 357999999999997642 22235579999999942 79999999999
Q ss_pred HHHHHhccCCCeeEEEcc-CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 235 NFIRVFFESDNIQIRFRP-SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 235 ~ll~~lfg~~~~~~r~~p-s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
.++..+ |. . .+.|.+ ...|+.||+..+.|++ +|+ .||++|+|||+|++++|++ .++|+|||+++.|
T Consensus 617 ~ll~~l-~~-~-~~~~~~~~~~~~~hPg~sA~I~~-~g~------~iG~iG~lhP~v~~~~~l~---~~v~~~Ei~l~~l 683 (791)
T PRK00629 617 ALLEAL-GL-P-EVEFVAEFEAAALHPGRSAEIYL-DGK------VIGFIGELHPKVLKKLDLP---GRTYVFELDLDAL 683 (791)
T ss_pred HHHHHc-CC-C-ceeEeecCCCcCcCCceEEEEEE-CCE------EEEEEEEECHHHHHHcCCC---CCEEEEEEEHHHh
Confidence 999987 85 2 356777 7778779999999987 222 7899999999999999997 6899999999998
Q ss_pred HHH
Q psy9576 314 TML 316 (338)
Q Consensus 314 am~ 316 (338)
...
T Consensus 684 ~~~ 686 (791)
T PRK00629 684 LEA 686 (791)
T ss_pred hhh
Confidence 754
|
|
| >CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-25 Score=231.77 Aligned_cols=199 Identities=19% Similarity=0.223 Sum_probs=162.1
Q ss_pred ccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCC
Q psy9576 88 KTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN 167 (338)
Q Consensus 88 ~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~ 167 (338)
--++|+.++|.. ...|..++.+.+.+.+|+.|+++||+|+.++.+++... + . . +.+.|.||. ++
T Consensus 380 GYdnI~~~~p~~-~~~~~~~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~-~-----~-~-------~~i~l~NPi-S~ 443 (704)
T CHL00192 380 GFNNFLSKLPNI-KFIGRLDIDYNTRDKIRSYLRNLGLTELIHYSLVKQES-F-----S-K-------NEIKLKNPL-IK 443 (704)
T ss_pred CcccCccccccc-ccCCCCCHHHHHHHHHHHHHHhCCCceEecccccChhh-c-----C-C-------CcEEEeCCC-ch
Confidence 346788888864 56689999999999999999999999999999987642 1 1 1 247899996 89
Q ss_pred CcceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEcC------------CCCHHHHHH
Q psy9576 168 NKPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDK------------NISFSDLKG 231 (338)
Q Consensus 168 ~~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g~------------~~~f~dLKg 231 (338)
++++||||++|+++++++. +..++++||+|+||.++.+ ...+..+++++++|. .++|+|+||
T Consensus 444 e~s~lR~SLlpgLL~~~~~N~~r~~~~~rlFEiG~Vf~~~~~--~~~e~~~la~~~~g~~~~~~~w~~~~~~~dF~d~Kg 521 (704)
T CHL00192 444 DYSTLRSSLLPGLIEAVQENLKQGNSTLEGFEIGHVFNLDSS--SIIEETELAGGIFGGIDIRSSWSEKAQSLNWFEAKG 521 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEeeeeEcCCCc--cccccceEEEEEECCCcCccccCCCCCccCHHHHHH
Confidence 9999999999999999964 3479999999999976532 234557899999884 469999999
Q ss_pred HHHHHHHHhccCCCeeEEEcc----CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEe
Q psy9576 232 VYLNFIRVFFESDNIQIRFRP----SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFG 307 (338)
Q Consensus 232 ~l~~ll~~lfg~~~~~~r~~p----s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afe 307 (338)
+|+.++..+ |. .+.|.+ +..|+.||+..++|++ ..| -.||++|+|||+|++++|++ .++++||
T Consensus 522 ~le~ll~~l-~i---~~~~~~~~~~~~~~~~hPgrsA~I~~-----~~g-~~iG~iG~lhP~v~~~~~l~---~~v~~~E 588 (704)
T CHL00192 522 IIENFFQKL-NL---PIYWKKYSDLDEKINFHPYCTSEIFL-----SNG-QKIGIFGQLHPLLANKLNLN---TEIYLFE 588 (704)
T ss_pred HHHHHHHHC-CC---cEEEEeccccccCcCCCCCcEEEEEE-----ECC-cEEEEEEEECHHHHHHcCCC---CCeEEEE
Confidence 999999988 84 255665 4567779999999986 222 27999999999999999997 7899999
Q ss_pred echhHHHHHH
Q psy9576 308 SGLERLTMLR 317 (338)
Q Consensus 308 lglerlam~~ 317 (338)
|+++.|....
T Consensus 589 i~l~~l~~~~ 598 (704)
T CHL00192 589 INLDILQYSI 598 (704)
T ss_pred EEHHHhhhhh
Confidence 9999986544
|
|
| >TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-25 Score=232.88 Aligned_cols=207 Identities=19% Similarity=0.220 Sum_probs=160.7
Q ss_pred cccCCCCCCCCCCCCCCCChHHH-HHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCC
Q psy9576 89 TNKIDITLPGRGKNKGGLHPIMR-TLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN 167 (338)
Q Consensus 89 ~~~id~tlp~~~~~~G~~hp~~~-~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~ 167 (338)
-++|+.++|... ..+..++..+ ..+++|+.|+++||+|+.++.+++... ...++.+... +.+.|.||. ++
T Consensus 473 ydni~~~~p~~~-~~~~~~~~~~~~~~~~r~~L~~~Gf~Ev~tysl~s~~~-~~~~~~~~~~------~~i~l~NPi-s~ 543 (798)
T TIGR00472 473 YDNIPAEPLSVS-SKLNKNNENYLLLRKLRTLLVGLGLNEVITYSLVSSEK-AEKFNFPKLE------NLVEIKNPL-SN 543 (798)
T ss_pred cccCCCCCCCcc-cCCCCCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHH-HHhhcCCCCC------ceEEEeCCC-ch
Confidence 356777777643 3444555544 448999999999999999999988744 3455554321 248899996 89
Q ss_pred CcceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEcCC-----------CCHHHHHHH
Q psy9576 168 NKPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKN-----------ISFSDLKGV 232 (338)
Q Consensus 168 ~~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g~~-----------~~f~dLKg~ 232 (338)
++++||||++|+++++++. +.+++++||+|+||..+.. +..+..+++++++|.. ++|+++||.
T Consensus 544 e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEiG~V~~~~~~--~~~e~~~La~~~~g~~~~~~~~~~~~~~df~d~Kg~ 621 (798)
T TIGR00472 544 ERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEIGKVFAKDGL--GVKEQLRLAILISGEKNPSSWNHKEEKVDFYDLKGD 621 (798)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeeecccCCCCC--CcchhhEEEEEEECCCCcccccCCCCcCChHHHHHH
Confidence 9999999999999999854 3678999999999976522 2335579999999853 699999999
Q ss_pred HHHHHHHhccCCCeeEEEcc-CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechh
Q psy9576 233 YLNFIRVFFESDNIQIRFRP-SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLE 311 (338)
Q Consensus 233 l~~ll~~lfg~~~~~~r~~p-s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelgle 311 (338)
|+.++..+ |. ...+.+.+ ...|+.||+..+.|++ ++ ..||++|+|||+|++++|+. .++++|||+++
T Consensus 622 le~ll~~l-~~-~~~~~~~~~~~~~~~hpg~sA~I~~-----~~--~~iG~iG~lhP~v~~~~~l~---~~v~~~Ei~l~ 689 (798)
T TIGR00472 622 VESLLELL-GL-SDDVYFKNTAENEELHPGQSATIYL-----KG--KKIGFIGELHPEIAKKYDLK---EPTFVAELDLD 689 (798)
T ss_pred HHHHHHHc-CC-CcceEEeecCCCCCCCCCcEEEEEE-----CC--EEEEEEEEECHHHHHHcCCC---CCeEEEEEEHH
Confidence 99999987 75 21334555 5667779999999987 22 27999999999999999997 78999999999
Q ss_pred HHHHHHc
Q psy9576 312 RLTMLRY 318 (338)
Q Consensus 312 rlam~~~ 318 (338)
.|.....
T Consensus 690 ~l~~~~~ 696 (798)
T TIGR00472 690 RLLESLK 696 (798)
T ss_pred HHhhhhc
Confidence 9875543
|
Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however. |
| >COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-25 Score=230.98 Aligned_cols=202 Identities=20% Similarity=0.323 Sum_probs=163.2
Q ss_pred ccccCCCCCCCCCC-CCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccC
Q psy9576 88 KTNKIDITLPGRGK-NKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS 166 (338)
Q Consensus 88 ~~~~id~tlp~~~~-~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~ 166 (338)
.-++++.++|.... ..|..++.+.+.+.+|++|+++||+|+.++.+++...++..+...++ .+.|.||+ +
T Consensus 331 Gy~ni~~~~p~~~~~~~~~~~~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~~~~--------~~~l~NPi-S 401 (650)
T COG0072 331 GYNNIPPELPSAFTIGRGGLTPLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLENDE--------ALELANPI-S 401 (650)
T ss_pred CcccCCCcCCcccccccCCCChHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccCCCc--------ceEecCCc-c
Confidence 34678888887443 22348999999999999999999999999999999887776655432 57899996 8
Q ss_pred CCcceEeccchHHHHHHHhcC----CCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEc----------CCCCHHHHHHH
Q psy9576 167 NNKPLLRTHTSPMQIRYSKIN----KPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWID----------KNISFSDLKGV 232 (338)
Q Consensus 167 ~~~~~LRt~lsp~~l~~l~~~----~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g----------~~~~f~dLKg~ 232 (338)
+++++|||+++|+++++++.| .+.+++||+|+||..+.+. ..+..+++++++| +.++|+++||.
T Consensus 402 ~e~s~mR~sLlp~LL~~~~~N~~r~~~~~~iFEiG~v~~~~~~~--~~~~~~~~~l~~g~~~~~~w~~~~~v~f~d~Kg~ 479 (650)
T COG0072 402 EEYSVLRTSLLPGLLEALSYNKNRKNPDVRIFEIGDVFVKDEEA--ERETRHLAGLAAGLAGEESWQGKRPVDFYDAKGD 479 (650)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEeeeeEecCCcc--cchhHHHHHHhhccccccccccCCCcCHHHHHHH
Confidence 999999999999999999652 3459999999999997321 1111233444443 26899999999
Q ss_pred HHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhH
Q psy9576 233 YLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLER 312 (338)
Q Consensus 233 l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelgler 312 (338)
|+.+++.+ | ..+.|++...|+.||+..+.|++ + + ..||++|+|||+|++++++. +++++|||+++.
T Consensus 480 ve~ll~~l-g---~~~~~~~~~~~~~hpgrsA~I~~-----~-~-~~iG~iGeiHP~vl~~~dl~---~~~~~fEi~l~~ 545 (650)
T COG0072 480 LEALLEAL-G---VEYEFEPAEHPAFHPGRSAAIYL-----N-K-EVIGFIGELHPEVLKEFDLP---GPVYVFEIDLDA 545 (650)
T ss_pred HHHHHHHh-C---CceEEEEccCCCccCCceEEEEE-----C-C-EEEEEEeeeCHHHHHhcCCC---CCeEEEEEehhh
Confidence 99999999 8 46788888888999999999987 3 2 37999999999999999997 889999999765
Q ss_pred HH
Q psy9576 313 LT 314 (338)
Q Consensus 313 la 314 (338)
+.
T Consensus 546 l~ 547 (650)
T COG0072 546 LL 547 (650)
T ss_pred hc
Confidence 43
|
|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.3e-22 Score=175.84 Aligned_cols=190 Identities=19% Similarity=0.298 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC--
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN-- 187 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~-- 187 (338)
..+.+.+|++|.++||+|+.+|.+++... +...+.. + +.+.+.||. +++..+||++++|++++.+.++
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~-~~~~~~~---~-----~~~~~~~~~-~~~~~~LR~s~~~~l~~~~~~n~~ 72 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPL-LEKAGHE---P-----KDLLPVGAE-NEEDLYLRPTLEPGLVRLFVSHIR 72 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHH-HHHcCcc---H-----hheeeeecC-CCCEEEECCCCcHHHHHHHHhhcc
Confidence 57889999999999999999999987633 3443322 1 124566774 6778899999999999998764
Q ss_pred CCCceEEEeeeEEEeCC-CC--CCCcceeEEEEEEEcCCC----CHHHHHHHHHHHHHHhccCCCeeEEEc-cCCCCCC-
Q psy9576 188 KPPIKVITSGRVYRIDS-DS--THSPMFHQIEGLWIDKNI----SFSDLKGVYLNFIRVFFESDNIQIRFR-PSYFPFT- 258 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d~-d~--th~~~f~ql~~l~~g~~~----~f~dLKg~l~~ll~~lfg~~~~~~r~~-ps~fpf~- 258 (338)
..|+|+||+|+|||.+. .. +|..+|.|+++.++|... +|+++|++++.+++.+ |. ...+++. ....++.
T Consensus 73 ~~~~~lfeig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~l-g~-~~~~~~~~~~~~~~~~ 150 (211)
T cd00768 73 KLPLRLAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRAL-GI-KLDIVFVEKTPGEFSP 150 (211)
T ss_pred cCCEEEEEEcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHc-CC-CcceEEEecCchhhcc
Confidence 47999999999999973 33 678899999999998754 7999999999999998 84 2244555 3344444
Q ss_pred -CCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC-------CCCeEEEEEeechhHH
Q psy9576 259 -EPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD-------PEKYIGFAFGSGLERL 313 (338)
Q Consensus 259 -~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~-------~~~~~~~afelglerl 313 (338)
+|+..++|.+.++ ...|.+||.+|++||.+++++++. ...-++..+++++||+
T Consensus 151 ~~~g~~~~i~~~~~--~~~~~eig~~g~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~R~ 211 (211)
T cd00768 151 GGAGPGFEIEVDHP--EGRGLEIGSGGYRQDEQARAADLYFLDEALEYRYPPTIGFGLGLERL 211 (211)
T ss_pred ccCCceEEEEEEcc--CCCeEEEeeceeecCchhHhhhhheecccccccCceeecCccCccCC
Confidence 8888888766211 123569999999999999988873 1112556677888874
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. |
| >KOG2472|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.3e-21 Score=185.32 Aligned_cols=200 Identities=18% Similarity=0.205 Sum_probs=159.5
Q ss_pred ccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCC
Q psy9576 88 KTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN 167 (338)
Q Consensus 88 ~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~ 167 (338)
--.||..|+|. ..+.|+.-|++++.+.+|.-++.+||+|+.++.++|...| +.+ ..-.+.|.||. +.
T Consensus 374 GyNNi~~~lP~-~~~~~~~~plNkl~d~lR~e~a~ag~~E~l~~~LcS~de~------~~d-----~~~AV~l~NPk-t~ 440 (578)
T KOG2472|consen 374 GYNNIQMTLPA-SNTIAKPFPLNKLTDILRIEVAAAGFTEALTFTLCSRDEN------VID-----GDKAVHLGNPK-TL 440 (578)
T ss_pred ccccccccCcc-hhcccCccchHHHHHHHHHHHHHhhhhhheeeeeeccccC------Ccc-----cccceEecCCC-ce
Confidence 45689999998 5569999999999999999999999999999999998763 111 11237889996 78
Q ss_pred CcceEeccchHHHHHHHhcC---CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccC
Q psy9576 168 NKPLLRTHTSPMQIRYSKIN---KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 168 ~~~~LRt~lsp~~l~~l~~~---~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~ 243 (338)
++.++||+++||+++++..+ ..|+|+||+++|.-.| +..-....+++++++++|++..|+.+.|.|+.+++.- +.
T Consensus 441 efqv~RtsLlPGllKTv~~N~~~~lP~klFEisDvv~~D~~~e~ga~N~R~l~A~y~g~~~gfE~i~Glld~~l~~~-~~ 519 (578)
T KOG2472|consen 441 EFQVVRTSLLPGLLKTVASNRKMPLPIKLFEISDVVFKDSSTEVGARNERHLAAVYCGKTSGFEIIHGLLDQLLNVP-PI 519 (578)
T ss_pred eeeeehhhhchHHHHHHHhccCCCCceeEEEeeeEEEecccccccccchheeeeeecCCCccHHHHHHHHHHHhcCC-cc
Confidence 99999999999999999654 4699999999999998 3223444568999999999999999999999777654 22
Q ss_pred CCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 244 DNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 244 ~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
...+....+.-| .-||..+.|++ .|+ .||-+|.+||+|+.+|++. ++.-++|+++|.+
T Consensus 520 -~~~Y~i~~~~~~-yfpgr~A~v~~-~g~------~iG~~GvlhPev~~~F~l~---~~~s~~Ei~ie~~ 577 (578)
T KOG2472|consen 520 -RDSYYIEADEDP-YFPGRCAKVIV-EGK------VIGKIGVLHPEVLTKFELT---YPCSAVEIDIEPF 577 (578)
T ss_pred -ccceEEecCcCC-cCCCcceEEEE-cCc------eeeeecccCHHHHhhcCCC---CccceEEeeeEec
Confidence 122334444444 23666677765 233 7889999999999999998 9999999999864
|
|
| >PF02912 Phe_tRNA-synt_N: Aminoacyl tRNA synthetase class II, N-terminal domain; InterPro: IPR004188 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-18 Score=130.83 Aligned_cols=73 Identities=32% Similarity=0.561 Sum_probs=69.7
Q ss_pred hcCCCHHHHHHHHHHhcCCcchHHHHHHHhcCCChhHhhhhchhhHHHHHHHHHHHHHHHHHHHHhhHHHhhc
Q psy9576 16 STAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKINIKKELNIHRDILKKKQLKVSLK 88 (338)
Q Consensus 16 ~~~~~~~~l~~~~~~~lGkkg~l~~l~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~~~~~~~~~~ 88 (338)
++|+|+++|+++|++||||||.|+.+|++|+++|+|+||.+|+.+|++|+.|+++++++++.|+..+++++|+
T Consensus 1 ~~a~~~~~Le~~r~~~LGKKG~lt~~~k~l~~l~~eek~~~G~~iN~~K~~i~~~~~~~~~~L~~~~~~~~L~ 73 (73)
T PF02912_consen 1 QQAKDLEELEELRVKYLGKKGELTQLLKQLKKLPPEEKPEFGKKINELKQEIEEALEEKKEELEAAELEAKLA 73 (73)
T ss_dssp HCCCCCCHHHHHHHHHHHHHHHCCSCTCTTTTCGGCTTTHHHHCCHHHHCHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCccHHHHHHHHhhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999888763
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases []. This is the N-terminal domain of phenylalanyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3PCO_C 1EIY_A 2RHS_C 2RHQ_A 2IY5_A. |
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.8e-11 Score=112.33 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
..++.+.+|++|...||.||.+|.++.... +. ..+.|.+.... ......||+|.--.+-+.+..+.
T Consensus 4 rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~--~~-----------~~~~f~~~~~~-~g~~~~L~~Spql~~~~~~~~~~ 69 (269)
T cd00669 4 RSKIIKAIRDFMDDRGFLEVETPMLQKITG--GA-----------GARPFLVKYNA-LGLDYYLRISPQLFKKRLMVGGL 69 (269)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEeccCC--cc-----------ccceEEeeecC-CCCcEEeecCHHHHHHHHHhcCC
Confidence 367899999999999999999999975311 10 01335442110 11225777663333333333332
Q ss_pred CCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 189 PPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
-|+|++|+|||.+ .+.+|.+||+|+++-.+.. ++.++...++.+++.++
T Consensus 70 --~~vf~i~~~fR~e~~~~~hl~EF~~le~e~~~~--~~~dvm~~~e~lv~~i~ 119 (269)
T cd00669 70 --DRVFEINRNFRNEDLRARHQPEFTMMDLEMAFA--DYEDVIELTERLVRHLA 119 (269)
T ss_pred --CcEEEEecceeCCCCCCCcccceeEEEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 2999999999999 4889999999999987764 78888888888877664
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.6e-10 Score=108.23 Aligned_cols=115 Identities=18% Similarity=0.203 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecC--CccCCCcceEeccchHHHH--HHH
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKN--RYVSNNKPLLRTHTSPMQI--RYS 184 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~n--p~~~~~~~~LRt~lsp~~l--~~l 184 (338)
...+.+.+|++|...||.||.+|.+++.. .-+. + + +.|.+.- +........||+| |.+. +.+
T Consensus 4 rs~i~~~ir~~f~~~gF~EV~TP~l~~~~-~~e~------~-~----~~F~~~y~~~~~~~~~~yL~~S--pql~lk~ll 69 (304)
T TIGR00462 4 RARLLAAIRAFFAERGVLEVETPLLSPAP-VTDP------H-L----DAFATEFLGPDGEGRPLYLQTS--PEYAMKRLL 69 (304)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEecCC-CCCc------C-C----cceeeeccCCCCCCcceeeecC--HHHHHHHHH
Confidence 46789999999999999999999998642 1110 0 0 1122210 0000122567766 5442 344
Q ss_pred hcCCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 185 KINKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 185 ~~~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
...- -|||++|+|||++ .+.+|.|||+||++..++ .++.|+...++.+++.++
T Consensus 70 ~~g~--~rVfeigp~FRaE~~~~rHl~EFtmLE~e~~~--~d~~d~m~~~e~li~~i~ 123 (304)
T TIGR00462 70 AAGS--GPIFQICKVFRNGERGRRHNPEFTMLEWYRPG--FDYHDLMDEVEALLQELL 123 (304)
T ss_pred hccC--CCEEEEcCceeCCCCCCCcccHHHhHHHHHHc--CCHHHHHHHHHHHHHHHH
Confidence 4333 3999999999999 578999999999996655 478888888888776665
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. |
| >PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.9e-10 Score=107.22 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH-HHHhcC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI-RYSKIN 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l-~~l~~~ 187 (338)
...+.+.+|++|.+.||.||.+|.++..... .+.-..+.|+ .++.++-. + ....|+ +||.+. +.+...
T Consensus 33 Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~--~~~~g~~~~~----~~~~~~~~--~-~~~yL~--~Spql~k~ll~~g 101 (335)
T PRK06462 33 QSSILRYTREFLDGRGFVEVLPPIISPSTDP--LMGLGSDLPV----KQISIDFY--G-VEYYLA--DSMILHKQLALRM 101 (335)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeEecCCCC--CCCccccCCc----cccccccC--C-Cceeec--cCHHHHHHHHHhh
Confidence 3678999999999999999999999754110 0000000111 12222111 1 113454 445554 333333
Q ss_pred CCCceEEEeeeEEEeC-CCC---CCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 188 KPPIKVITSGRVYRID-SDS---THSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~d~---th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
. -|||++|+|||++ .+. +|.|||+|+++..++ .++.++...++.+++.++
T Consensus 102 ~--~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~--~d~~dlm~~~e~lv~~i~ 155 (335)
T PRK06462 102 L--GKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEG--ADLDEVMDLIEDLIKYLV 155 (335)
T ss_pred c--CcEEEEeccccCCCCCCCCCCCCCchheeeehhhc--CCHHHHHHHHHHHHHHHH
Confidence 2 4999999999999 566 999999999998887 478888888887776554
|
|
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-09 Score=104.67 Aligned_cols=112 Identities=19% Similarity=0.215 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH-HHH-hcC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI-RYS-KIN 187 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l-~~l-~~~ 187 (338)
..+...+|++|.+.||.||.+|.+.+.... .. .+.|.+.... ......|++ ||.+. +.+ ...
T Consensus 12 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~~-------~~------~~~f~~~~~~-~~~~~yL~~--Spql~~k~ll~~g 75 (329)
T cd00775 12 SKIISYIRKFLDDRGFLEVETPMLQPIAGG-------AA------ARPFITHHNA-LDMDLYLRI--APELYLKRLIVGG 75 (329)
T ss_pred HHHHHHHHHHHHHCCCEEEECCccccCCCC-------cc------ceeEEeccCC-CCcceeecc--CHHHHHHHHHhcC
Confidence 578899999999999999999999654210 00 1223221110 112245654 46553 333 333
Q ss_pred CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 188 KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
. -|||++|+|||.+ .+.+|++||+|+++-.++ .++.++...++.+++.++
T Consensus 76 ~--~~vf~i~~~FR~E~~~~rHl~EFt~le~e~~~--~~~~~~m~~~e~li~~i~ 126 (329)
T cd00775 76 F--ERVYEIGRNFRNEGIDLTHNPEFTMIEFYEAY--ADYNDMMDLTEDLFSGLV 126 (329)
T ss_pred C--CcEEEEeccccCCCCCCCCCCceEEEEEeeec--CCHHHHHHHHHHHHHHHH
Confidence 2 4999999999999 589999999999998876 488888888888887654
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-09 Score=101.41 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH--HHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR--YSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~--~l~~ 186 (338)
...+.+.||++|...||.||.+|.++.... -.+ + + |.+.-.....+...|++ ||.+.. .+..
T Consensus 4 Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~-~g~---------~---~-f~~~~~~~~~~~~~L~~--Spql~lk~ll~~ 67 (280)
T cd00777 4 RSRVIKAIRNFLDEQGFVEIETPILTKSTP-EGA---------R---D-FLVPSRLHPGKFYALPQ--SPQLFKQLLMVS 67 (280)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeeecCCC-CCC---------C---C-ceeccccCCCceeeccc--CHHHHHHHHHhc
Confidence 357889999999999999999999974321 011 0 0 21111100011123554 565532 2333
Q ss_pred CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 187 NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
.. -|+|++|+|||.+ .+..|.+||+|+++-+++. ++.++...++.+++.++
T Consensus 68 g~--~~v~~i~~~fR~e~~~~~r~~Ef~~~e~e~~~~--~~~dlm~~~e~li~~i~ 119 (280)
T cd00777 68 GF--DRYFQIARCFRDEDLRADRQPEFTQIDIEMSFV--DQEDIMSLIEGLLKYVF 119 (280)
T ss_pred Cc--CcEEEeccceeCCCCCCCccceeEEeEeeeccC--CHHHHHHHHHHHHHHHH
Confidence 32 3999999999999 5677888999999998874 78899988888886554
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. |
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-09 Score=107.14 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceee---cCCccCCCcceEeccchHHHHH--H
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYI---KNRYVSNNKPLLRTHTSPMQIR--Y 183 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i---~np~~~~~~~~LRt~lsp~~l~--~ 183 (338)
...+...+|++|.+.||.||.+|.+.+.. + .++. +.|.+ ..+ ..|++| |.+.. .
T Consensus 136 Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~--------~--eg~~---~~f~v~~~~~~------~yL~~S--pql~~q~l 194 (428)
T TIGR00458 136 RSGVLESVREFLAEEGFIEVHTPKLVASA--------T--EGGT---ELFPITYFERE------AFLGQS--PQLYKQQL 194 (428)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCceecCC--------C--CCCc---ceeeeEecCCc------EEECcC--HHHHHHHH
Confidence 35778899999999999999999996431 0 1111 22332 233 456554 65532 3
Q ss_pred HhcCCCCceEEEeeeEEEeC-CC-CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 184 SKINKPPIKVITSGRVYRID-SD-STHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 184 l~~~~~pirifeiG~Vyr~d-~d-~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
+.... -|+|++|+|||++ .+ .+|+|||+|+++-+++. +..++...++.+++.+
T Consensus 195 i~~g~--~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~--~~~dlm~~~e~li~~i 249 (428)
T TIGR00458 195 MAAGF--ERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFE--DHHDVMDILEELVVRV 249 (428)
T ss_pred Hhccc--CcEEEEecccccCCCCCccchheeeEeeeeeccC--CHHHHHHHHHHHHHHH
Confidence 33332 3999999999999 45 47999999999998873 5567776666666544
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). |
| >PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.4e-09 Score=103.50 Aligned_cols=112 Identities=18% Similarity=0.257 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH-HHH-hc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI-RYS-KI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l-~~l-~~ 186 (338)
...+...+|++|...||.||.+|.+.+. .++ ++. +.|.+.-- + ....|++| |.+. +.+ ..
T Consensus 139 Rs~i~~~iR~ff~~~gf~EV~TP~L~~~--------~~e--g~~---~~f~~~~~--~-~~~~L~~S--pql~~q~l~~~ 200 (437)
T PRK05159 139 RSEVLRAFREFLYENGFTEIFTPKIVAS--------GTE--GGA---ELFPIDYF--E-KEAYLAQS--PQLYKQMMVGA 200 (437)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCccccc--------CCC--CCc---ceEeEEec--C-CceEecCC--HHHHHHHHHhc
Confidence 3577899999999999999999998542 011 111 23433211 1 11456655 5543 222 23
Q ss_pred CCCCceEEEeeeEEEeC-CC-CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 187 NKPPIKVITSGRVYRID-SD-STHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d-~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
.. -|+|++|+|||++ .+ .+|.|||+|+++.+++.+ ++.++...++.+++.++
T Consensus 201 g~--~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~-~~~~lm~~~e~lv~~i~ 254 (437)
T PRK05159 201 GF--ERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFID-DHEDVMDLLENLLRYMY 254 (437)
T ss_pred CC--CcEEEEeceeeCCCCCCcccchhhheeeeeeeecc-cHHHHHHHHHHHHHHHH
Confidence 22 4999999999999 45 479999999999988732 36677666666665443
|
|
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-08 Score=97.83 Aligned_cols=109 Identities=16% Similarity=0.234 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCcccee---ecCCccCCCcceEeccchHHHH-HHH
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFY---IKNRYVSNNKPLLRTHTSPMQI-RYS 184 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~---i~np~~~~~~~~LRt~lsp~~l-~~l 184 (338)
...+.+.+|++|.+.||.||.+|.++... -+. . .+.|. ...+ ..|++| |.+. +.+
T Consensus 27 rs~i~~~ir~~f~~~gf~eV~TP~l~~~~--~e~-------~----~~~f~~~~~~~~------~yL~~S--pql~lk~l 85 (322)
T cd00776 27 RSEVLRAFREFLRENGFTEVHTPKITSTD--TEG-------G----AELFKVSYFGKP------AYLAQS--PQLYKEML 85 (322)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceecCC--CCc-------c----CCccccccCCCc------ceecCC--HHHHHHHH
Confidence 46788999999999999999999997631 111 0 11232 2233 456655 5442 223
Q ss_pred hcCCCCceEEEeeeEEEeCC-C-CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 185 KINKPPIKVITSGRVYRIDS-D-STHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 185 ~~~~~pirifeiG~Vyr~d~-d-~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
... --|||++|+|||++. + .+|.+||+|+++-.++.+ ++.++...++.+++.++
T Consensus 86 ~~~--~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~-~~~dlm~~~e~ll~~~~ 141 (322)
T cd00776 86 IAA--LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIE-DYNEVMDLIEELIKYIF 141 (322)
T ss_pred HHh--hhhhEEeccccccCCCCcCCCcceeeccceeeeccC-CHHHHHHHHHHHHHHHH
Confidence 222 349999999999994 4 589999999999988731 67777777776665443
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-08 Score=91.38 Aligned_cols=198 Identities=12% Similarity=0.093 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCc--cCCCcceEeccchHHHHHHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRY--VSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~--~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
...+.+.+++.|...||+++.+|.+++. ..|.+-+ |...-..+.+.+..+. ...+..+||+.+.+...+...+
T Consensus 5 ~~~l~~~~~~~~~~~G~~ei~~P~l~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~ 79 (235)
T cd00670 5 WRALERFLDDRMAEYGYQEILFPFLAPT-VLFFKGG----HLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSG 79 (235)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeEcCH-HHHhhcC----CcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhc
Confidence 4678899999999999999999999765 3455433 2211122345554431 0034479999999999887754
Q ss_pred -----CCCCceEEEeeeEEEeCC-C---CCCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHHhccCCCeeEEEc--
Q psy9576 187 -----NKPPIKVITSGRVYRIDS-D---STHSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRVFFESDNIQIRFR-- 251 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d~-d---~th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~lfg~~~~~~r~~-- 251 (338)
...|+|++.+|+|||.+. . .....+|+|.++-+.|.. ..+.++......+++.+ |. ...+...
T Consensus 80 ~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~l-gl-~~~i~~~~~ 157 (235)
T cd00670 80 EILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIAREL-GL-PVRVVVADD 157 (235)
T ss_pred cCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEEccC
Confidence 246999999999999984 3 345679999999999864 23567888888888888 85 3333332
Q ss_pred cCCC--------CCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCC--C----CCCeEEEEEeechhHHHHH
Q psy9576 252 PSYF--------PFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNL--D----PEKYIGFAFGSGLERLTML 316 (338)
Q Consensus 252 ps~f--------pf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi--~----~~~~~~~afelglerlam~ 316 (338)
+.+. .+..|..++.+.... .++|.+|++++.-.-.-.....+ + .....+..+.+++||++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~d~e~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eR~l~a 233 (235)
T cd00670 158 PFFGRGGKRGLDAGRETVVEFELLLPL---PGRAKETAVGSANVHLDHFGASFKIDEDGGGRAHTGCGGAGGEERLVLA 233 (235)
T ss_pred hhhccCCccccccccCCceEEEEEecC---CCCceeeeEEEeecchhhhhccEEEccCCCceeeEEEeCccHHHHHHHH
Confidence 2233 577788777776511 13577888777665444332111 0 0113445666899998765
|
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-07 Score=86.39 Aligned_cols=192 Identities=19% Similarity=0.271 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN- 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~- 187 (338)
.+.+.+.++++|...||+++.+|.+++. ..+..-+-+ ..+ .+.|.+.++ +.+..+||+.++|...|.+.++
T Consensus 5 ~~~l~~~l~~~f~~~Gy~~v~tP~le~~-~~~~~~~~~---~~~--~~~~~~~d~--~g~~l~LRpd~T~~iaR~~a~~~ 76 (261)
T cd00773 5 RRYIEDTLREVFERYGYEEIDTPVFEYT-ELFLRKSGD---EVS--KEMYRFKDK--GGRDLALRPDLTAPVARAVAENL 76 (261)
T ss_pred HHHHHHHHHHHHHHcCCEEeeccceeeH-HHhcccccc---ccc--ceEEEEECC--CCCEEEeCCCCcHHHHHHHHhcC
Confidence 4678899999999999999999999764 334332211 111 356777655 3455899999999999987653
Q ss_pred ---CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHH--HHHHHHHHHHHh---------------------
Q psy9576 188 ---KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSD--LKGVYLNFIRVF--------------------- 240 (338)
Q Consensus 188 ---~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~d--LKg~l~~ll~~l--------------------- 240 (338)
..|+|++++|+|||.+ ....+..+|+|+.+=+.|.+....| +-.++..+++.+
T Consensus 77 ~~~~~p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~~~daE~i~l~~~~l~~lg~~~~~i~l~~~~i~~~l~~~ 156 (261)
T cd00773 77 LSLPLPLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPLADAEVIALAVEILEALGLKDFQIKINHRGILDGIAGL 156 (261)
T ss_pred ccCCCCeEEEEEcCEEecCCCCCCCccceEEeceeeeCCCChHHHHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHhhc
Confidence 3699999999999998 4567888999999878774322111 222222222222
Q ss_pred --------------------------------ccCCCeeEEEccCCCC--CCCCceEEEEEeecCCCCCCCeeEeeeeec
Q psy9576 241 --------------------------------FESDNIQIRFRPSYFP--FTEPSAEIDIVFQDGPLKGNWLEISGAGQV 286 (338)
Q Consensus 241 --------------------------------fg~~~~~~r~~ps~fp--f~~Ps~e~~i~~~~g~~~~gwieig~~G~v 286 (338)
+|. ...+.+.++..+ ...-|.-..+++ .+. +.+ -.|++-|.-
T Consensus 157 ~~~~~~~~~~l~~~l~~~~l~~l~~l~~~l~~~~~-~~~i~~d~~~~r~~~YYtG~vF~~~~-~~~-~~~-~~i~~GGRY 232 (261)
T cd00773 157 LEDREEYIERLIDKLDKEALAHLEKLLDYLEALGV-DIKYSIDLSLVRGLDYYTGIVFEAVA-DGL-GAQ-GSIAGGGRY 232 (261)
T ss_pred cCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CceEEEcCccccCCcccCceEEEEEE-CCC-Ccc-CeEeeccCH
Confidence 132 234666666332 111243344444 111 112 268888888
Q ss_pred CHHHhhhC-CCCCCCeEEEEEeechhHHHHH
Q psy9576 287 NPKVLCNM-NLDPEKYIGFAFGSGLERLTML 316 (338)
Q Consensus 287 hP~Vl~~~-gi~~~~~~~~afelglerlam~ 316 (338)
.- .+..+ |-+ .|++.|.+++|||..+
T Consensus 233 D~-L~~~f~~~~---~~avGfa~~~d~l~~~ 259 (261)
T cd00773 233 DG-LLEEFGGED---VPAVGFAIGLERLLLA 259 (261)
T ss_pred HH-HHHHhCCCC---CCeEEEEEcHHHHHHh
Confidence 74 55554 443 6899999999999865
|
HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain. |
| >PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-08 Score=99.91 Aligned_cols=135 Identities=13% Similarity=0.209 Sum_probs=99.3
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhc-CCCCCCCCCcCccceeecCCccCCCcceEeccchHHH
Q psy9576 102 NKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTAL-NSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180 (338)
Q Consensus 102 ~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L-~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~ 180 (338)
.+...+....+.+.++++|...||+++.+|.++.. ..|..- +...+|+.. +.|.+.++ +.+..+||+.+++..
T Consensus 14 ~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~-~~~~~~~g~~~~~~~~---~~~~~~d~--~g~~l~LRpd~T~~~ 87 (412)
T PRK00037 14 LPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYT-ELFKRKVGEETDIVEK---EMYTFQDK--GGRSLTLRPEGTAPV 87 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchH-HHhccccCcccccccc---eeEEEEcC--CCCEEEecCCCcHHH
Confidence 44556778899999999999999999999999653 334321 111112222 45666555 345679999999999
Q ss_pred HHHHhcC-CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 181 IRYSKIN-KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 181 l~~l~~~-~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
++.+.++ ..|+|+|++|+|||.+ ....+..+|+|.++-++|.+... .++-.++..+++.+ |.
T Consensus 88 ar~~~~~~~~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~l-g~ 153 (412)
T PRK00037 88 VRAVIEHKLQPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKAL-GL 153 (412)
T ss_pred HHHHHhCCCCCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHHc-CC
Confidence 9988654 3799999999999998 46678899999999999865333 55666677777776 64
|
|
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-08 Score=103.09 Aligned_cols=112 Identities=22% Similarity=0.244 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCC--CCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPK--NHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~--~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
..++...||++|...||.||.+|.+.+... .+--.|- .|. +++.+ ..||++.--.+-+.+..
T Consensus 256 RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~G--GA~a~PF~T~~n--------~~d~~------lYLriSpEL~lKrLlvg 319 (585)
T PTZ00417 256 RTKIINYLRNFLNDRGFIEVETPTMNLVAG--GANARPFITHHN--------DLDLD------LYLRIATELPLKMLIVG 319 (585)
T ss_pred HHHHHHHHHHHHHHCCeEEEeCCeeeccCC--cccceeEEeccc--------CCCcc------eEEeecHHHHHHHHHHh
Confidence 346788999999999999999999976421 1110010 010 11222 47887744444444443
Q ss_pred CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 187 NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
+- -||||+|+|||++ .+.+|.|||+|+++..++ .++.|+...++.+++.+
T Consensus 320 G~--~rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ay--~dy~dlM~l~E~Li~~v 370 (585)
T PTZ00417 320 GI--DKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAY--ADFYDLIKWSEDFFSQL 370 (585)
T ss_pred CC--CCEEEEcccccCCCCCCCccceeeeeeeeeec--CCHHHHHHHHHHHHHHH
Confidence 33 3999999999999 589999999999999987 58889887777776544
|
|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.9e-08 Score=98.87 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHH--HhcC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRY--SKIN 187 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~--l~~~ 187 (338)
..+.+.+|++|.+.||.||.+|.+.+.. ++.+ .+.|.+.-. + ....|++ ||.+..- +...
T Consensus 229 s~i~~~~R~fl~~~gF~EV~TP~L~~~~--------~egg-----a~~F~v~yf--~-~~~~L~q--Spql~kq~li~~g 290 (530)
T PLN02850 229 SQVCNLFREFLLSKGFVEIHTPKLIAGA--------SEGG-----SAVFRLDYK--G-QPACLAQ--SPQLHKQMAICGD 290 (530)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCccccCC--------Cccc-----cceeeeccC--C-cceecCC--CHHHHHHHHHHhc
Confidence 3678899999999999999999985431 1110 122444321 1 1145654 4665432 2222
Q ss_pred CCCceEEEeeeEEEeCC--CCCCCcceeEEEEEE
Q psy9576 188 KPPIKVITSGRVYRIDS--DSTHSPMFHQIEGLW 219 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d~--d~th~~~f~ql~~l~ 219 (338)
. -|+|++|+|||.+. +..|++||+|+++-+
T Consensus 291 ~--~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em 322 (530)
T PLN02850 291 F--RRVFEIGPVFRAEDSFTHRHLCEFTGLDLEM 322 (530)
T ss_pred C--CceEEEecccccCCCCCCccchhhccchhhh
Confidence 2 39999999999993 578999999998764
|
|
| >TIGR00442 hisS histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.8e-08 Score=95.59 Aligned_cols=134 Identities=16% Similarity=0.214 Sum_probs=97.9
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCC-CCCCCcCccceeecCCccCCCcceEeccchHHHH
Q psy9576 103 KGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPK-NHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI 181 (338)
Q Consensus 103 ~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~-~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l 181 (338)
+...+..+++.+.++++|...||+++.+|.++.. ..|..-.-+. +++. .++|.+... +.+..+||+.+++...
T Consensus 11 p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~-~~~~~~~g~~~~~~~---~~~~~~~d~--~g~~l~LRpD~T~~ia 84 (397)
T TIGR00442 11 PEEMIKWQYIEETIREVFELYGFKEIRTPIFEYT-ELFARKVGEETDIVE---KEMYTFKDK--GGRSLTLRPEGTAPVA 84 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEecCcccchH-HHhhhccCccccccc---cceEEEECC--CCCEEeecCCCcHHHH
Confidence 3456778899999999999999999999999764 3443322111 1122 234666554 2456799999999999
Q ss_pred HHHhcC----CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHH--HHHHHHHHHHHHhccC
Q psy9576 182 RYSKIN----KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFS--DLKGVYLNFIRVFFES 243 (338)
Q Consensus 182 ~~l~~~----~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~--dLKg~l~~ll~~lfg~ 243 (338)
|.+.++ ..|.|+|++|+|||.+ .+..+..+|+|+++-++|.+.... ++-.++..+++.+ |.
T Consensus 85 R~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~l-g~ 152 (397)
T TIGR00442 85 RAVIENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKEL-GI 152 (397)
T ss_pred HHHHhcccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHHc-CC
Confidence 987542 3589999999999988 466788999999999988654333 5666777777776 65
|
This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. |
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-08 Score=101.58 Aligned_cols=110 Identities=14% Similarity=0.182 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
...+...+|++|.+.||.||.+|.+....- +. - .+.|.+.-. + ....|+ .||.+..-|.-..
T Consensus 216 rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~--------eg-g----a~~F~v~yf--~-~~~~L~--qSpql~kq~li~~ 277 (550)
T PTZ00401 216 QSRVCQYFRQFLIDSDFCEIHSPKIINAPS--------EG-G----ANVFKLEYF--N-RFAYLA--QSPQLYKQMVLQG 277 (550)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCccccCCC--------Cc-c----ccccccccC--C-CCeecC--CCHHHHHHHHHhc
Confidence 347889999999999999999999865310 00 0 122322211 1 113554 4566654432211
Q ss_pred CCceEEEeeeEEEeC-CC-CCCCcceeEEEEEEE-cCCCCHHHHHHHHHHHHH
Q psy9576 189 PPIKVITSGRVYRID-SD-STHSPMFHQIEGLWI-DKNISFSDLKGVYLNFIR 238 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d-~th~~~f~ql~~l~~-g~~~~f~dLKg~l~~ll~ 238 (338)
.--|+|++|+|||.+ .+ ..|++||+||++-+. + .++.++..+++.++.
T Consensus 278 g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~--~~y~evm~~~e~l~~ 328 (550)
T PTZ00401 278 DVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRIN--EHYYEVLDLAESLFN 328 (550)
T ss_pred CCCCEEEEeCeEeCCCCCCCCCccchhhhhhhhHhc--CCHHHHHHHHHHHHH
Confidence 124999999999999 43 689999999998433 2 234455555554444
|
|
| >PLN02603 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.4e-07 Score=94.14 Aligned_cols=113 Identities=19% Similarity=0.149 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhh--hhhc------------------CCCCCCCC-Cc-CccceeecCCccCC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNN--FTAL------------------NSPKNHPA-RS-MHDTFYIKNRYVSN 167 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~n--f~~L------------------~~p~~hpa-r~-~~dt~~i~np~~~~ 167 (338)
..+...+|++|...||.||.+|.|++..-. -+.. .+|..++. .+ .+| |...+
T Consensus 230 S~i~~air~ff~~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~d--yF~~~---- 303 (565)
T PLN02603 230 NALAYATHKFFQENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQD--FFGKP---- 303 (565)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchh--hhCcc----
Confidence 456788999999999999999999764210 0101 11111000 00 001 11122
Q ss_pred CcceEeccchHHH-HHHHhcCCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHH
Q psy9576 168 NKPLLRTHTSPMQ-IRYSKINKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNF 236 (338)
Q Consensus 168 ~~~~LRt~lsp~~-l~~l~~~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~l 236 (338)
..|+.| |.+ ++.+...- -|+|++|+|||.+ + ..+|++||+|++.-++. +++.|+..+++.+
T Consensus 304 --~~LtvS--~QL~~E~~~~~l--~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af--~dl~d~m~~~E~~ 367 (565)
T PLN02603 304 --AFLTVS--GQLNGETYATAL--SDVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLNDDMACATAY 367 (565)
T ss_pred --eeeccC--chHHHHHHHhcc--cceEEEecceeCCCCCCccccccceeeeeeeec--CCHHHHHHHHHHH
Confidence 344443 322 23333322 3899999999999 4 36999999999987765 3455555444433
|
|
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.3e-08 Score=97.43 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceee-cCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYI-KNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i-~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
.++...||++|.+.||.||.+|.+.+... .+ + ++ .|.. .|- . .....||+|.--.+-+.+...-
T Consensus 188 s~i~~~iR~f~~~~gFiEVeTPiL~~~~g--Ga-~------a~----pF~t~~~~-~-~~~~yL~~SpELylKrlivgG~ 252 (505)
T PRK12445 188 SKILAAIRQFMVARGFMEVETPMMQVIPG--GA-S------AR----PFITHHNA-L-DLDMYLRIAPELYLKRLVVGGF 252 (505)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCeeEecCC--CC-c------cc----ceeccccc-C-CcceeeecCHHHHHHHHHhccC
Confidence 46788999999999999999999965311 11 0 01 1210 011 0 1114687763222223343333
Q ss_pred CCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 189 PPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
-|+||+|+|||++ .+.+|.|||+|+++.+++ .++.|+...++.+++.+
T Consensus 253 --~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~--~d~~d~m~l~E~li~~l 301 (505)
T PRK12445 253 --ERVFEINRNFRNEGISVRHNPEFTMMELYMAY--ADYHDLIELTESLFRTL 301 (505)
T ss_pred --CcEEEEehhccCCCCCCCcCcccceeeeeeec--CCHHHHHHHHHHHHHHH
Confidence 3999999999999 589999999999999987 47889888888888765
|
|
| >COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-08 Score=100.11 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
..++++.||++|...||.||.+|.+.+..---.+-.+-..|.+-++ + ..||-..=-.+-|.+-.+-
T Consensus 183 Rs~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF~ThhNald~--------d------lyLRIApELyLKRliVGG~ 248 (502)
T COG1190 183 RSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPFITHHNALDM--------D------LYLRIAPELYLKRLIVGGF 248 (502)
T ss_pred HHHHHHHHHHHHHHCCCeEeccccccccCCCcccccceeeecccCC--------c------eEEeeccHHHHHHHHhcCc
Confidence 3578899999999999999999999765443333333333433322 1 5788775555555554433
Q ss_pred CCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHH----HHhccCCCeeEEE
Q psy9576 189 PPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFI----RVFFESDNIQIRF 250 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll----~~lfg~~~~~~r~ 250 (338)
. |+||+|++||++ .|.||.|+|.+++...+. +++.|+....+.++ ..+.| ..++.|
T Consensus 249 e--rVfEIgr~FRNEGid~tHNPEFTmlE~Y~AY--aDy~D~m~ltE~Li~~~a~~v~g--t~~v~y 309 (502)
T COG1190 249 E--RVFEIGRNFRNEGIDTTHNPEFTMLEFYQAY--ADYEDLMDLTEELIKELAKEVNG--TTKVTY 309 (502)
T ss_pred h--hheeeccccccCCCccccCcchhhHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcC--CeEEEE
Confidence 2 999999999999 599999999999988875 56677766655555 45555 244444
|
|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=98.69 E-value=6e-08 Score=98.67 Aligned_cols=112 Identities=22% Similarity=0.273 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH--HHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI--RYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l--~~l~~ 186 (338)
...+...||++|.+.||.||.+|.+.+... .+ - .+.|.+..... .....||+| |.+. +.+..
T Consensus 175 Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~g--ga-------~----a~pF~t~~~~~-~~~~yLriS--pELylKrlivg 238 (496)
T TIGR00499 175 RSKIIKAIRRFLDDRGFIEVETPMLQVIPG--GA-------N----ARPFITHHNAL-DMDLYLRIA--PELYLKRLIVG 238 (496)
T ss_pred HHHHHHHHHHHHHHCcCEEEeCCeeecCCC--Cc-------c----ceeEEeecccC-CCceEEecC--HHHHHHHHHhC
Confidence 346788999999999999999999975421 11 0 11132211100 112568877 5442 33333
Q ss_pred CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 187 NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
+- -||||+|+|||++ .+.+|.|||+++++..+. .++.|+...++.+++.+
T Consensus 239 G~--~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~--~d~~dlm~~~E~li~~i 289 (496)
T TIGR00499 239 GF--EKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAY--ADYEDLMDLTENLFKFL 289 (496)
T ss_pred CC--CceEEEecceecCCCCCcccchhheeehhhhc--CCHHHHHHHHHHHHHHH
Confidence 33 3999999999999 589999999999998876 47888888888777654
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. |
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.6e-08 Score=92.76 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
...+.+.||++|.+.||.||.+|.++.. .++++...| -. .+.+..+.. .....+||||.-..+-+.+....
T Consensus 8 r~~i~~~ir~~f~~~gf~EV~TP~l~~~-~~~~~~~~~----f~--~~y~~~~~~--~~~~~~L~~SPe~~~kr~la~~~ 78 (306)
T PRK09350 8 RAKIIAEIRRFFADRGVLEVETPILSQA-TVTDIHLVP----FE--TRFVGPGAS--QGKTLWLMTSPEYHMKRLLAAGS 78 (306)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEecc-cCCCccCCc----ee--eeecccccc--CCcceEEecCHHHHHHHHhhccc
Confidence 3578899999999999999999999642 233332211 10 111111100 12235788763333334454432
Q ss_pred CCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhcc
Q psy9576 189 PPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg 242 (338)
-|+|++|+|||.+ .+..|.+||+|+++..++ .++.|+...++.++..++.
T Consensus 79 --~rvf~i~~~FR~e~~~~~H~~EFt~lE~y~~~--~d~~dlm~~~E~li~~i~~ 129 (306)
T PRK09350 79 --GPIFQICKSFRNEEAGRYHNPEFTMLEWYRPH--YDMYRLMNEVDDLLQQVLD 129 (306)
T ss_pred --cceEEecceeecCCCCCCCCcHHHhhhhhhhC--CCHHHHHHHHHHHHHHHHh
Confidence 3999999999999 588999999999997776 5788888888888876654
|
|
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-07 Score=94.61 Aligned_cols=112 Identities=20% Similarity=0.265 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH--HHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI--RYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l--~~l~~ 186 (338)
..++...||++|.+.||.||.+|.+.+... ...+ +.|....... .....||+| |.+. +.|..
T Consensus 175 Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~---------Ga~a----~pF~t~~~~~-~~~~yL~~S--pql~lk~l~v~ 238 (491)
T PRK00484 175 RSKIISAIRRFLDNRGFLEVETPMLQPIAG---------GAAA----RPFITHHNAL-DIDLYLRIA--PELYLKRLIVG 238 (491)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeccCC---------Cccc----eeeeeccccC-CCceEeccC--HHHHHHHHHhc
Confidence 356788999999999999999999965321 1001 1121110100 111457765 5543 33333
Q ss_pred CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 187 NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
+- -|+|++|+|||++ .+.+|.|||+|+++.++. .++.|+...++.+++.+
T Consensus 239 g~--~rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~--~d~~d~m~~~E~li~~i 289 (491)
T PRK00484 239 GF--ERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAY--ADYNDMMDLTEELIRHL 289 (491)
T ss_pred cC--CcEEEEecceecCCCCCCcCCceEEEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 32 4999999999999 588999999999998886 48889988888888755
|
|
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=97.65 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCCC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINKP 189 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~~ 189 (338)
..+...||++|.+.||.||.+|.+.+... .+ -++ .|..-.... .....||+|.--.+-+.+...-
T Consensus 233 s~i~~~iR~fl~~~gF~EVeTPiL~~~~g--GA-------~a~----pF~t~~n~~-~~~~yL~~Spel~lK~L~v~g~- 297 (553)
T PLN02502 233 AKIISYIRRFLDDRGFLEVETPMLNMIAG--GA-------AAR----PFVTHHNDL-NMDLYLRIATELHLKRLVVGGF- 297 (553)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeeccCC--Cc-------ccc----ceeeecccC-CcceeeecCHHHHHHHHHHhcc-
Confidence 45678999999999999999999975421 11 001 121110100 1225777763333323343333
Q ss_pred CceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 190 PIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 190 pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
-|||++|+|||++ .+.+|.|||+|+++.++. .++.|+..+++.+++.++
T Consensus 298 -~rVfeIg~~FRnE~~~~rH~pEFtmlE~y~a~--~d~~dlm~~~E~li~~i~ 347 (553)
T PLN02502 298 -ERVYEIGRQFRNEGISTRHNPEFTTCEFYQAY--ADYNDMMELTEEMVSGMV 347 (553)
T ss_pred -CCEEEEcCeeeCCCCCCccccceeehhhhhhc--CCHHHHHHHHHHHHHHHH
Confidence 3999999999999 588999999999998886 478888888888776553
|
|
| >PLN02532 asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.1e-07 Score=92.03 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=35.1
Q ss_pred ceEEEeeeEEEeC-CC-CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHH
Q psy9576 191 IKVITSGRVYRID-SD-STHSPMFHQIEGLWIDKNISFSDLKGVYLNFI 237 (338)
Q Consensus 191 irifeiG~Vyr~d-~d-~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll 237 (338)
-|+|++|++||.+ .+ .+|++||+|+++-++.. ++.|+..+++.++
T Consensus 390 ~rVYeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~--d~~dvM~l~E~lI 436 (633)
T PLN02532 390 GNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFS--ELEDAMNCAEDYF 436 (633)
T ss_pred CceEEEccceecCCCCCCcccccccceeeeehhc--CHHHHHHHHHHHH
Confidence 3999999999999 44 79999999999987753 4566665555554
|
|
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-07 Score=97.31 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
.+++...||++|.+.||.||.+|.+.+... ..-|+ .|.+..... .....||+|.--.+-+.+...-
T Consensus 236 Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~---------ga~a~----pF~t~~n~~-~~~~yL~~SPELylKrLivgG~ 301 (659)
T PTZ00385 236 RHVMLQALRDYFNERNFVEVETPVLHTVAS---------GANAK----SFVTHHNAN-AMDLFLRVAPELHLKQCIVGGM 301 (659)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCEeeccCC---------CCCcc----ceEeecccC-CCCEEecCChHHHHHHHhhccc
Confidence 457889999999999999999999954311 10111 122211000 1114677663333333443333
Q ss_pred CCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 189 PPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
-|+||+|+|||++ .+.+|.|||+|+++..++ .++.++...++.+++.+
T Consensus 302 --erVyeIg~~FRnE~~~~rH~pEFTmlE~y~a~--~d~~d~m~l~E~li~~~ 350 (659)
T PTZ00385 302 --ERIYEIGKVFRNEDADRSHNPEFTSCEFYAAY--HTYEDLMPMTEDIFRQL 350 (659)
T ss_pred --CCEEEEeceecCCCCCCCccccccceeeeeec--CCHHHHHHHHHHHHHHH
Confidence 3999999999999 589999999999999876 58899999999888766
|
|
| >PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.9e-07 Score=88.35 Aligned_cols=115 Identities=20% Similarity=0.288 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeec---CCccCCCcceEeccchHHHHHHHh
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIK---NRYVSNNKPLLRTHTSPMQIRYSK 185 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~---np~~~~~~~~LRt~lsp~~l~~l~ 185 (338)
...+.+.||++|...||.||.+|.++.... +. ..+.|.+. +... .....|++|.--.+-..+.
T Consensus 25 rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~--------~~-----~~~~F~v~~~~~~~~-~~~~~L~~Spql~~k~ll~ 90 (335)
T PF00152_consen 25 RSAILQAIREFFDKRGFIEVDTPILTSSTC--------EG-----GAEPFSVDSEPGKYF-GEPAYLTQSPQLYLKRLLA 90 (335)
T ss_dssp HHHHHHHHHHHHHHTT-EEE---SEESSSS--------SS-----SSCSEEEEESTTEET-TEEEEE-SSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCceEEcCceeecccc--------Cc-----cccccccccchhhhc-ccceecCcChHHHHhhhcc
Confidence 367889999999999999999999976421 11 12446665 1110 1123455553333333444
Q ss_pred cCCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 186 INKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 186 ~~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
.+- -|||++|+|||.+ . +.+|+|||+|+++..++ +++.++...++.+++.++
T Consensus 91 ~g~--~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~--~~~~~lm~~~e~li~~i~ 144 (335)
T PF00152_consen 91 AGL--ERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAF--ADYDDLMDLIEELIKYIF 144 (335)
T ss_dssp TTH--SEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEET--SSHHHHHHHHHHHHHHHH
T ss_pred ccc--hhhhheecceeccCcccccchhhhhhhhhcccc--CcHHHhHHHHHHHHHHHH
Confidence 432 3999999999999 5 89999999999999986 677777777777776654
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B .... |
| >COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.7e-07 Score=85.89 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=71.2
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHH--HHHH
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ--IRYS 184 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~--l~~l 184 (338)
-....+++.||.+|...||.||.+|.+... -+ ++.|-.. -.|-++... .++-..|--||||.. -+.+
T Consensus 17 l~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a-~v------td~hL~~--F~Te~~~~~--~~~~~~l~L~TSPEy~mKrLL 85 (322)
T COG2269 17 LKRAAIIAAIRRFFAERGVLEVETPALSVA-PV------TDIHLHP--FETEFLGPG--GAKGKPLWLHTSPEYHMKRLL 85 (322)
T ss_pred HHHHHHHHHHHHHHHHcCceEecchHhhcC-CC------Cccceee--eeeEEeccC--ccccceeeeecCcHHHHHHHH
Confidence 345688999999999999999999988432 22 2223211 123344433 222345566666654 4555
Q ss_pred hcCCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcC
Q psy9576 185 KINKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDK 222 (338)
Q Consensus 185 ~~~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~ 222 (338)
+.... +||.+|+|||+. ..+.|.|+|+|++++.+|-
T Consensus 86 Aag~~--~ifql~kvfRN~E~G~~H~PEFTMLEWYrv~~ 122 (322)
T COG2269 86 AAGSG--PIFQLGKVFRNEEMGRLHNPEFTMLEWYRVGC 122 (322)
T ss_pred HccCC--cchhhhHHHhcccccccCCCceeEeeeeccCC
Confidence 55443 789999999999 4899999999999999883
|
|
| >PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-06 Score=75.88 Aligned_cols=132 Identities=18% Similarity=0.193 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHh-hCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc--
Q psy9576 110 MRTLERIEKIFY-SIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI-- 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~-~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~-- 186 (338)
+.+.+.+++.+. ..||+++.+|.+.+.. .+..-+ |-..-..+.|.+.+. +.+..+||+.+-|++...++.
T Consensus 3 ~~l~~~~~~~~~~~~G~~ev~~P~l~~~~-~~~~sg----~~~~~~~~~~~~~~~--~~~~~~L~pt~~~~~~~~~~~~~ 75 (173)
T PF00587_consen 3 NALERFIREEFVLKFGFQEVDTPILIPSE-VWEKSG----HWDNFSDEMFKVKDR--GDEEYCLRPTSEPGIYSLFKNEI 75 (173)
T ss_dssp HHHHHHHHHHHHHHTTEEEEB--SEEEHH-HHHHHS----HHHHHGGGSEEEEET--TTEEEEE-SSSHHHHHHHHHHHE
T ss_pred HHHHHHHHHHhHHhcCCEEEECCeEEehH-Hhhhcc----ccccccCCeeeeeec--ccccEEeccccccceeeeeccee
Confidence 568889999999 9999999999998753 344322 110111234666654 234479999999999887743
Q ss_pred ----CCCCceEEEeeeEEEeC-C---CCCCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHHhccCCCeeEEEc
Q psy9576 187 ----NKPPIKVITSGRVYRID-S---DSTHSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRVFFESDNIQIRFR 251 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d-~---d~th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~lfg~~~~~~r~~ 251 (338)
...|++++++|+|||++ . ......+|+|.++.+.+.. -.+..+......+++.+ |. ..++++
T Consensus 76 ~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~l-gl--~~~~~~ 149 (173)
T PF00587_consen 76 RSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKL-GL--EPYRIV 149 (173)
T ss_dssp EBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHT-TS--GCEEEE
T ss_pred eeccccCCeEEeecccccccccccccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHc-CC--ceEEEE
Confidence 24799999999999999 3 3577889999999999876 45777888888888887 84 244444
|
seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B .... |
| >PTZ00425 asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.4e-06 Score=84.09 Aligned_cols=46 Identities=26% Similarity=0.239 Sum_probs=34.1
Q ss_pred ceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHH
Q psy9576 191 IKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIR 238 (338)
Q Consensus 191 irifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~ 238 (338)
-|+|++|+|||.+ . ...|++||+|+++-++.. +..++..+++.+++
T Consensus 344 ~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~--d~~d~m~~~E~li~ 391 (586)
T PTZ00425 344 GDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFA--DLYDNMELAESYIK 391 (586)
T ss_pred CCEEEEeceEeCCCCCCCCCCcccceEEEEEecC--CHHHHHHHHHHHHH
Confidence 3999999999999 4 479999999999987752 44555554444443
|
|
| >PLN02678 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.7e-05 Score=77.28 Aligned_cols=177 Identities=9% Similarity=0.044 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEecc---chHHHHHH-Hh
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTH---TSPMQIRY-SK 185 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~---lsp~~l~~-l~ 185 (338)
..+.+.+++.+...||++|.+|.+.... .+.+-+.++ .-..|.|.|.+. +++..++.|+ +.|..... ++
T Consensus 178 ~AL~~y~ld~~~~~Gy~~V~~P~lv~~~-~~~~sG~~~----~f~e~my~i~~~--~~~~yLi~TaE~~l~~~h~~~~~s 250 (448)
T PLN02678 178 QALINFGLAFLRKRGYTPLQTPFFMRKD-VMAKCAQLA----QFDEELYKVTGE--GDDKYLIATSEQPLCAYHRGDWID 250 (448)
T ss_pred HHHHHHHHHHHHHcCCEEEECcccccHH-HHhhcCCcc----cchhcCceecCC--CCceeeecccccccChHHhcccCC
Confidence 3456667777888899999999997753 444433332 222355777543 2455688875 55544322 22
Q ss_pred cCCCCceEEEeeeEEEeCCC--------CCCCcceeEEEEEEEcC--C----CCHHHHHHHHHHHHHHhccCCCeeEEEc
Q psy9576 186 INKPPIKVITSGRVYRIDSD--------STHSPMFHQIEGLWIDK--N----ISFSDLKGVYLNFIRVFFESDNIQIRFR 251 (338)
Q Consensus 186 ~~~~pirifeiG~Vyr~d~d--------~th~~~f~ql~~l~~g~--~----~~f~dLKg~l~~ll~~lfg~~~~~~r~~ 251 (338)
....|+|+++.|+|||++.. -...++|++++.++.-. . ..+.++....+.+++.| |+ ...+-.-
T Consensus 251 ~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L-~l-pyrvv~~ 328 (448)
T PLN02678 251 PKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSL-GI-PYQVVSI 328 (448)
T ss_pred HHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHc-CC-CeEEEee
Confidence 34579999999999999842 24456899999987722 1 34677888888999887 85 2222222
Q ss_pred cCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCC
Q psy9576 252 PSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNL 296 (338)
Q Consensus 252 ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi 296 (338)
|+..=..-++...||.++-.. ..+|.||.-|.-.--=-.+.++|
T Consensus 329 ~sgdlg~~a~~~yDiE~W~P~-~~~y~EvsS~Snc~D~QaRRl~i 372 (448)
T PLN02678 329 VSGALNDAAAKKYDLEAWFPA-SKTYRELVSCSNCTDYQSRRLEI 372 (448)
T ss_pred cccccCCchhhceeeEeeccc-cCCceEEeeecccccHhhhcccc
Confidence 332222223334455444111 34687877776444333334444
|
|
| >KOG1885|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.1e-08 Score=94.75 Aligned_cols=156 Identities=20% Similarity=0.218 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
..+++..||.+|-+.||.||.+|.+.....--.|-.+-..|..-+| -..||-..=-.+-+.+-.+
T Consensus 228 RakII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPFIT~hndldm--------------~LylRiAPEL~lK~LvVGG- 292 (560)
T KOG1885|consen 228 RAKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPFITHHNDLDM--------------DLYLRIAPELYLKMLVVGG- 292 (560)
T ss_pred HHHHHHHHHHHhhhcCceEecchhhccccCccccCceeecccccCc--------------ceeeeechHHHHHHHHhcc-
Confidence 3578889999999999999999998543222222111112211111 1567765322222222222
Q ss_pred CCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHH----HhccCCCeeEEEccCCCCCCCCceE
Q psy9576 189 PPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIR----VFFESDNIQIRFRPSYFPFTEPSAE 263 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~----~lfg~~~~~~r~~ps~fpf~~Ps~e 263 (338)
=-|+||||++||++ .|.||.|+|..++++.+. .++.|+..+-+.+++ .+.| ..++.|.|. +.++|..|
T Consensus 293 -ldrVYEIGr~FRNEGIDlTHNPEFTTcEfY~AY--ady~dlm~~TE~l~s~mv~~i~G--~~~i~y~p~--~~~~~~~e 365 (560)
T KOG1885|consen 293 -LDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAY--ADYEDLMDMTEELLSGMVKNITG--SYKITYHPN--GPEEPELE 365 (560)
T ss_pred -HHHHHHHHHHhhhcCcccccCCCcchHHHHHHH--hhHHHHHHHHHHHHHHHHHhhcC--ceeEeecCC--CCCCCcee
Confidence 23899999999999 699999999999988765 567888877666664 4445 355544442 14455677
Q ss_pred EEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC
Q psy9576 264 IDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD 297 (338)
Q Consensus 264 ~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~ 297 (338)
++. .-.|-.| ..+|.+-+.+|++
T Consensus 366 ldf-------~~pfrri----~mi~~L~k~lgi~ 388 (560)
T KOG1885|consen 366 LDF-------TRPFRRI----EMIEELEKELGIK 388 (560)
T ss_pred eec-------cCCeeee----eHHHHHHHHhCCC
Confidence 775 2356433 4567777888886
|
|
| >PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.3e-07 Score=99.34 Aligned_cols=113 Identities=18% Similarity=0.234 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCCC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINKP 189 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~~ 189 (338)
.++...||++|.+.||.||.+|.+.+..- ++ -+ +.|...-...+. ...||++.--.+-+.+...-
T Consensus 774 s~i~~~iR~fl~~~gFlEVeTPiL~~~~g--Ga-------~a----~pF~t~~~~~~~-~~yLriSPELylKrLivgG~- 838 (1094)
T PRK02983 774 SAVVRAVRETLVARGFLEVETPILQQVHG--GA-------NA----RPFVTHINAYDM-DLYLRIAPELYLKRLCVGGV- 838 (1094)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEeeccCC--Cc-------cc----ceeEeeecCCCc-cchhhcChHHHHHHHHhccc-
Confidence 46788999999999999999999974321 11 01 123111001111 14677663222223333333
Q ss_pred CceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 190 PIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 190 pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
-|+||+|+|||++ .+.+|.|||+|+|+..+. .++.|+...++.+++.+
T Consensus 839 -erVFEIg~~FRnE~~~~rHnpEFTmLE~y~a~--~dy~d~m~l~E~li~~i 887 (1094)
T PRK02983 839 -ERVFELGRNFRNEGVDATHNPEFTLLEAYQAH--ADYDTMRDLTRELIQNA 887 (1094)
T ss_pred -CceEEEcceecCCCCCCCccccccchhhhhhc--CCHHHHHHHHHHHHHHH
Confidence 3999999999999 589999999999998876 58899998888888655
|
|
| >cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.2e-06 Score=76.67 Aligned_cols=194 Identities=12% Similarity=0.078 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH----HH
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI----RY 183 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l----~~ 183 (338)
-...+.+.+++.+...||+++.+|.+++. ..|..= .|-..-..+.|.+.+. +.+..+||+..-+.+. +.
T Consensus 33 l~~~i~~~~~~~~~~~G~~ei~~P~l~~~-~~~~~s----g~~~~~~~emy~~~d~--~~~~l~LrPt~e~~~t~~~~~~ 105 (255)
T cd00779 33 VLKKIENIIREEMNKIGAQEILMPILQPA-ELWKES----GRWDAYGPELLRLKDR--HGKEFLLGPTHEEVITDLVANE 105 (255)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCH-HHHHhc----CCccccCcccEEEecC--CCCeEEEecCCcHHHHHHHHhc
Confidence 45788888999999999999999999765 344331 2222222355777543 2344689988333333 22
Q ss_pred Hh-cCCCCceEEEeeeEEEeC-CCCC---CCcceeEEEEEEEcCCC-----CHHHHHHHHHHHHHHhccCCCeeEEEc-c
Q psy9576 184 SK-INKPPIKVITSGRVYRID-SDST---HSPMFHQIEGLWIDKNI-----SFSDLKGVYLNFIRVFFESDNIQIRFR-P 252 (338)
Q Consensus 184 l~-~~~~pirifeiG~Vyr~d-~d~t---h~~~f~ql~~l~~g~~~-----~f~dLKg~l~~ll~~lfg~~~~~~r~~-p 252 (338)
+. .+..|+|++.+|+|||.+ .+.. ...+|+|.++...+.+- .+..+..+...+++.+ |+ ...+... .
T Consensus 106 i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~L-gl-~~~~~~~~~ 183 (255)
T cd00779 106 IKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRL-GL-PFVKVEADS 183 (255)
T ss_pred cccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEEecC
Confidence 22 235699999999999998 5432 57899999998887532 3346667778888888 86 2221111 2
Q ss_pred CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCC---C-----CeEEEEEeechhHHH
Q psy9576 253 SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDP---E-----KYIGFAFGSGLERLT 314 (338)
Q Consensus 253 s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~---~-----~~~~~afelglerla 314 (338)
..+.+ .-+.+.++.++- . ..+++|||-|--+.-.--+.++|.- + -+. -++||++.|+.
T Consensus 184 ~~~gg-~~s~~~~~e~~~-~-~~~~~e~~s~~~lg~~~sr~~~i~~~~~~~~~~~~~~-~~~gi~~~R~l 249 (255)
T cd00779 184 GAIGG-SLSHEFHVLSPL-K-ITKGIEVGHIFQLGTKYSKALGATFLDENGKPKPLEM-GCYGIGVSRLL 249 (255)
T ss_pred CCCCC-cccEEEEEEEec-C-CCCeEEEEeeeecchhHHHhcCcEEECCCCCEEeeEe-cCccchHHHHH
Confidence 34444 233455554430 1 2247899999888887778888741 1 012 46778888875
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes. |
| >CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.3e-06 Score=82.72 Aligned_cols=129 Identities=12% Similarity=0.174 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhh-cCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHH-h
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTA-LNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYS-K 185 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~-L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l-~ 185 (338)
....+.+.++++|...||+++.+|.++.. ..|.. .+-..++.. .+.|.+... +.+..+||+-++|..+|+. +
T Consensus 20 ~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~-e~~~~~~G~~~~~~~---~~my~~~d~--~g~~l~LRpd~T~~iaR~~~~ 93 (430)
T CHL00201 20 YWQFIHDKALTLLSLANYSEIRTPIFENS-SLYDRGIGETTDIVN---KEMYRFTDR--SNRDITLRPEGTAGIVRAFIE 93 (430)
T ss_pred HHHHHHHHHHHHHHHcCCeeecCcccchH-HHHhcccCCcccccc---cceEEEEcC--CCCEEEeCCCCcHHHHHHHHH
Confidence 45788899999999999999999999764 33432 221112222 245766554 2345799999999999975 3
Q ss_pred c----CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 186 I----NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 186 ~----~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
+ ..+|+|++++|+|||.+ .......+|+|+.+=+.|...-. .++-.++...++.+ |.
T Consensus 94 ~~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~l-Gl 157 (430)
T CHL00201 94 NKMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNEL-QV 157 (430)
T ss_pred ccccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHHHHc-CC
Confidence 2 13689999999999998 44567789999998888754322 45667777777777 75
|
|
| >TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.6e-06 Score=86.99 Aligned_cols=113 Identities=16% Similarity=0.226 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH--HHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR--YSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~--~l~~ 186 (338)
..++...+|++|...||.||.+|.+.... |+. ||+ |.+.......+...|| .||.+.. .|..
T Consensus 141 Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~--------~eG--ar~----f~vp~~~~~~~~y~L~--qSpQlykq~l~v~ 204 (583)
T TIGR00459 141 RHKVTKAVRNFLDQQGFLEIETPMLTKST--------PEG--ARD----YLVPSRVHKGEFYALP--QSPQLFKQLLMVS 204 (583)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeccCC--------CCC--Ccc----eeeeeecCCCceeecC--CCHHHHHHHHHhc
Confidence 45788999999999999999999997421 111 121 1110000011223355 4466643 3334
Q ss_pred CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 187 NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
.- -|+|++|+|||.+ .+.+|.|||+|+++-++. +++.|+..+++.+++.++
T Consensus 205 G~--ervfqI~~~FR~E~~~t~r~pEFT~le~E~af--~d~~dvm~~~E~li~~v~ 256 (583)
T TIGR00459 205 GV--DRYYQIARCFRDEDLRADRQPEFTQIDMEMSF--MTQEDVMELIEKLVSHVF 256 (583)
T ss_pred cc--CcEEEEcceeeCCCCCCCCCcccCcceeeecC--CCHHHHHHHHHHHHHHHH
Confidence 33 3999999999999 567788999999999887 478999999988887665
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. |
| >TIGR00414 serS seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00025 Score=70.99 Aligned_cols=192 Identities=11% Similarity=0.080 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc---
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI--- 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~--- 186 (338)
..+.+-+++.+...||+++.+|.+.+.. .+..-+..+. -..+.|.|.+. + .+||++--..+......
T Consensus 177 ~aL~~~~~~~~~~~G~~~v~~P~lv~~~-~~~~~G~~~~----f~~~~y~i~~~----~-~~L~pTsE~~~~~~~~~~i~ 246 (418)
T TIGR00414 177 RALINFMLDLLEKNGYQEIYPPYLVNEE-SLDGTGQLPK----FEEDIFKLEDT----D-LYLIPTAEVPLTNLHRNEIL 246 (418)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCccccHH-HHhhcCcccc----ccccceEecCC----C-EEEEeCCcHHHHHHHhCcCC
Confidence 4556667888888999999999997764 4444433221 11244666543 2 57887743333322222
Q ss_pred --CCCCceEEEeeeEEEeCCC--------CCCCcceeEEEEEEEcC----CCCHHHHHHHHHHHHHHhccCCCeeEEEcc
Q psy9576 187 --NKPPIKVITSGRVYRIDSD--------STHSPMFHQIEGLWIDK----NISFSDLKGVYLNFIRVFFESDNIQIRFRP 252 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d~d--------~th~~~f~ql~~l~~g~----~~~f~dLKg~l~~ll~~lfg~~~~~~r~~p 252 (338)
...|+|++++|+|||++.. -...++|++.++.+... ...+..+....+.+++.| |. ...+-..+
T Consensus 247 s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~L-gl-p~r~v~~~ 324 (418)
T TIGR00414 247 EEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQEL-EL-PYRVVNLC 324 (418)
T ss_pred ChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHc-CC-ceEEEecC
Confidence 3469999999999999842 23467899999866642 245777888888899887 85 22221223
Q ss_pred CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC---C--C--Ce--EEEEEeechhHHH
Q psy9576 253 SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD---P--E--KY--IGFAFGSGLERLT 314 (338)
Q Consensus 253 s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~---~--~--~~--~~~afelglerla 314 (338)
+..-+...+.+.|+.++-.. ..+|.||+.|--..---.+.++|. . . ++ .+.+.+++++|+.
T Consensus 325 t~dlg~~a~~~ydiE~w~p~-~~~~~ev~s~sn~~d~qsrr~~i~y~~~~~~~~~~vh~ln~~~~ai~R~i 394 (418)
T TIGR00414 325 SGDLGFSAAKKYDLEVWMPG-QNTYREISSCSNCTDFQARRLNIRYKDKNKGKNKYVHTLNGTALAIGRTI 394 (418)
T ss_pred ccccccCHhhhhhHHHhCCC-cCceEEEEEEcCcchHhHHhCCcEEECCCCCceEEEEeecCcchHHHHHH
Confidence 31111111122233221011 246878888876655556666653 1 1 11 1236678889864
|
This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. |
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-06 Score=84.94 Aligned_cols=112 Identities=19% Similarity=0.195 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecC-------CccCCCcceEeccchHHHH
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKN-------RYVSNNKPLLRTHTSPMQI 181 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~n-------p~~~~~~~~LRt~lsp~~l 181 (338)
...+...+|++|.+.||.||.+|.+++.. ++. +. +.|.+.. ...+ ....|++| |.+.
T Consensus 136 Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~--------~eg--~~---~~F~v~~~~~~~~~~~~~-~~~~L~~S--pql~ 199 (450)
T PRK03932 136 RNTLAQAIHEFFNENGFVWVDTPIITASD--------CEG--AG---ELFRVTTLDLDFSKDFFG-KEAYLTVS--GQLY 199 (450)
T ss_pred HHHHHHHHHHHHHHCCCEEecCCceeccC--------CCC--CC---CceEeecccccccccccC-CCcccccC--HHHH
Confidence 46788999999999999999999997531 111 11 2233310 0001 11456655 4432
Q ss_pred -HHHhcCCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 182 -RYSKINKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 182 -~~l~~~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
+.+...- -|+|++|+|||.+ . +.+|+|||+|+++-+++. ++.++...++.+++.+
T Consensus 200 lq~l~~g~--~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~~--~~~~~m~~~e~li~~~ 257 (450)
T PRK03932 200 AEAYAMAL--GKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFA--DLEDNMDLAEEMLKYV 257 (450)
T ss_pred HHHHHhcc--CCeEEeeeccccCCCCCccccccccccceEEecc--CHHHHHHHHHHHHHHH
Confidence 3444332 4999999999999 4 579999999999988863 5677777777666543
|
|
| >cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.3e-05 Score=76.69 Aligned_cols=194 Identities=11% Similarity=0.034 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc--
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI-- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~-- 186 (338)
...+.+-+++.+.+.||+++.+|.+.+. ..+..-+.- | .-..+.|.+.+. ..+||++.-+.+....++
T Consensus 55 ~~~l~~~~~~~~~~~G~~ev~~P~l~~~-~l~~~sg~~---~-~~~~~~f~v~~~-----~~~L~pt~e~~~~~l~~~~~ 124 (297)
T cd00770 55 ERALINFALDFLTKRGFTPVIPPFLVRK-EVMEGTGQL---P-KFDEQLYKVEGE-----DLYLIATAEVPLAALHRDEI 124 (297)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcccccH-HHHhhcCcC---c-cChhcccEecCC-----CEEEeecCCHHHHHHHhccc
Confidence 4568888899999999999999999765 445443321 1 111234666442 268888877767665543
Q ss_pred ---CCCCceEEEeeeEEEeCCC--------CCCCcceeEEEEEEEcC----CCCHHHHHHHHHHHHHHhccCCCeeEEEc
Q psy9576 187 ---NKPPIKVITSGRVYRIDSD--------STHSPMFHQIEGLWIDK----NISFSDLKGVYLNFIRVFFESDNIQIRFR 251 (338)
Q Consensus 187 ---~~~pirifeiG~Vyr~d~d--------~th~~~f~ql~~l~~g~----~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ 251 (338)
...|+|++++|+|||++.. -....+|.|.++.+... .-.+.++......+++.| |. ...+...
T Consensus 125 ~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~l-gl-~~~~~~~ 202 (297)
T cd00770 125 LEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQEL-GL-PYRVVNI 202 (297)
T ss_pred CCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECchHHHHHHHHHHHHHHHHHHHc-CC-cEEEEEc
Confidence 3579999999999998732 12356889999877643 234677778888888887 85 2222222
Q ss_pred cCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCC------CC---eEEEEEeechhHHHH
Q psy9576 252 PSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDP------EK---YIGFAFGSGLERLTM 315 (338)
Q Consensus 252 ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~------~~---~~~~afelglerlam 315 (338)
++..-+...+.+.|+..+-.. ..+|.|++.|--..--..+.++|.- ++ +.+.+.+++++|+..
T Consensus 203 ~~~dl~~~~~~~~d~e~~~p~-~~~~~e~~s~s~~~d~~s~r~~i~y~~~~~~~~~~~~~~~~~~~~~~R~l~ 274 (297)
T cd00770 203 CTGDLGFAAAKKYDIEAWMPG-QGKYREISSCSNCTDFQARRLNIRYRDKKDGKKQYVHTLNGTALATPRTIV 274 (297)
T ss_pred cCccccCchhhheeeheecCC-CCCeEEEEEccCccChhhhhcCcEEecCCCCCeeeeeEecccchHHHHHHH
Confidence 332111111233343222111 3468888887655545556665521 11 122446788999754
|
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. |
| >PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.3e-05 Score=74.85 Aligned_cols=124 Identities=17% Similarity=0.200 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN- 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~- 187 (338)
...+.+.++++|...||.++.+|.++... .|.... ..+ ..+.+.+.++ +.+..+||+-+++..+|.++++
T Consensus 13 ~~~i~~~l~~~f~~~Gy~~i~~P~le~~~-~~~~~~-~~~-----~~~~~~~~D~--~G~~l~LR~D~T~~iaR~~a~~~ 83 (311)
T PF13393_consen 13 RERIESKLREVFERHGYEEIETPLLEYYE-LFLDKS-GED-----SDNMYRFLDR--SGRVLALRPDLTVPIARYVARNL 83 (311)
T ss_dssp HHHHHHHHHHHHHHTT-EE-B--SEEEHH-HHHCHS-STT-----GGCSEEEECT--TSSEEEE-SSSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeEeecH-Hhhhcc-ccc-----hhhhEEEEec--CCcEeccCCCCcHHHHHHHHHhc
Confidence 46788999999999999999999997653 333211 111 1245777665 4566899999999999998763
Q ss_pred --CCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCH---HHHHHHHHHHHH-HhccC
Q psy9576 188 --KPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISF---SDLKGVYLNFIR-VFFES 243 (338)
Q Consensus 188 --~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f---~dLKg~l~~ll~-~lfg~ 243 (338)
..|.|++.+|+|||... ...+..+|+|+++=++|.+ +. .++-.++..++. .+ |.
T Consensus 84 ~~~~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~-~~~~daEvi~l~~e~l~~~l-~~ 144 (311)
T PF13393_consen 84 NLPRPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSS-SLEADAEVIKLADEILDREL-GL 144 (311)
T ss_dssp GSSSSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSS-SHHHHHHHHHHHHHHHHHHH-TT
T ss_pred CcCCCceEEEEcceeeccccCCCCCceeEEEEEEEECCC-CHHHHHHHHHHHHHHHHhhc-CC
Confidence 57999999999999983 4456778899999888865 33 356667777775 66 63
|
... |
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.3e-05 Score=77.83 Aligned_cols=128 Identities=16% Similarity=0.116 Sum_probs=88.7
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhc-CCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHh
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTAL-NSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSK 185 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L-~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~ 185 (338)
.....+.+.++++|...||.++.+|.++.. ..|.+- +-..+ ..+|.+.++. +.+...||+-+++..+|.++
T Consensus 22 ~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~-e~~~~~~g~~~~------~~~y~f~D~~-~g~~l~LRpD~T~~iaR~~a 93 (392)
T PRK12421 22 QKIERLRRRLLDLFASRGYQLVMPPLIEYL-ESLLTGAGQDLK------LQTFKLIDQL-SGRLMGVRADITPQVARIDA 93 (392)
T ss_pred HHHHHHHHHHHHHHHHcCCEEeeCcchhhH-HHHhccCCccch------hceEEEEcCC-CCcEEEECCcCCHHHHHHHH
Confidence 345678899999999999999999999653 344321 21111 1346665541 23446899999999999775
Q ss_pred cC---CCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 186 IN---KPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 186 ~~---~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
.+ ..|.|+|.+|+|||.+. ......+|+|+..=++|.+.-. .++-.++...++.+ |.
T Consensus 94 ~~~~~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l-gi 156 (392)
T PRK12421 94 HLLNREGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA-GV 156 (392)
T ss_pred hhcCCCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHc-CC
Confidence 43 46999999999999873 3346778999999998854322 24555555566665 54
|
|
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=1e-05 Score=84.01 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHH--Hhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRY--SKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~--l~~ 186 (338)
..++...+|++|...||.||.+|.+.... |+. ||+ |.+.......++..|+ .||.+..- |..
T Consensus 144 Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~--------~eg--a~~----f~v~~~~~~~~~~~L~--qSpql~kq~l~~~ 207 (588)
T PRK00476 144 RSKVTSAIRNFLDDNGFLEIETPILTKST--------PEG--ARD----YLVPSRVHPGKFYALP--QSPQLFKQLLMVA 207 (588)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecCC--------CCC--Ccc----ceecccccCCceeecC--CCHHHHHHHHHhc
Confidence 36788999999999999999999997531 111 121 2211100011223454 55766442 333
Q ss_pred CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 187 NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
.- -|+|++|+|||.+ .+.+|.|||+|+++-+++ ++..++...++.+++.++
T Consensus 208 g~--~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af--~~~~dvm~~~E~li~~i~ 259 (588)
T PRK00476 208 GF--DRYYQIARCFRDEDLRADRQPEFTQIDIEMSF--VTQEDVMALMEGLIRHVF 259 (588)
T ss_pred cc--CceEEEeceeecCCCCCCcCcccccceeeecC--CCHHHHHHHHHHHHHHHH
Confidence 33 3999999999999 466677799999999887 478899999888887765
|
|
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.2e-06 Score=83.24 Aligned_cols=117 Identities=17% Similarity=0.186 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchh--hhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHH-HHHHh
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFN--NFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ-IRYSK 185 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~--nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~-l~~l~ 185 (338)
...+...+|++|.+.||.||.+|.++...- .-+...++.++.. .... |...+ ..|++| |.+ ++.+.
T Consensus 139 Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~eg~~~~F~v~~~~~~--~~~~-~~~~~------~yL~~S--pql~lq~l~ 207 (453)
T TIGR00457 139 RNALSQAIHRYFQENGFTWVSPPILTSNDCEGAGELFRVSTDGID--FSQD-FFGKE------AYLTVS--GQLYLETYA 207 (453)
T ss_pred HHHHHHHHHHHHHHCCCEEecCCeEeecCCCCCCCceEecccccc--cchh-ccCCc------cccccC--HHHHHHHHh
Confidence 357789999999999999999999975320 0000000000000 0000 11222 356655 544 23343
Q ss_pred cCCCCceEEEeeeEEEeC-CC-CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 186 INKPPIKVITSGRVYRID-SD-STHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 186 ~~~~pirifeiG~Vyr~d-~d-~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
..- -|+|++|+|||.+ .+ .+|++||+|+++-++.. ++.++...++.+++.+
T Consensus 208 ~g~--~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~--~~~dvm~~~E~lv~~i 260 (453)
T TIGR00457 208 LAL--SKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFA--NLNDLLQLAETLIKYI 260 (453)
T ss_pred hcc--cCceEeeeccccCCCCCCcCcchhccceeeeecC--CHHHHHHHHHHHHHHH
Confidence 222 4999999999999 45 58999999999988763 5777777777666543
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn. |
| >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.1e-05 Score=78.51 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=94.8
Q ss_pred CChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCC--CCCCcCccceeecCCccCCCcceEeccchHHHHHH
Q psy9576 106 LHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKN--HPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRY 183 (338)
Q Consensus 106 ~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~--hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~ 183 (338)
....+.+.+.+++++.+.||+++.+|.+|... -|.+ ...+. -+. .+.+.+.+. +.....||+-+++..+|.
T Consensus 18 ~~~~~~i~~~~~~v~~~yGf~eI~TPifE~te-lf~r-~~Ge~td~v~---kemY~F~Dk--ggr~laLRpe~Tapv~R~ 90 (429)
T COG0124 18 MALREYIESTIRKVFESYGFSEIRTPIFEYTE-LFAR-KSGEETDVVE---KEMYTFKDK--GGRSLALRPELTAPVARA 90 (429)
T ss_pred HHHHHHHHHHHHHHHHHcCCEeccCccccchh-Hhhh-ccCCcccccc---cceEEEEeC--CCCEEEecccCcHHHHHH
Confidence 34567889999999999999999999997542 3431 12221 111 223444444 356679999999999998
Q ss_pred HhcC----CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCC--CHHHHHHHHHHHHHHhccC
Q psy9576 184 SKIN----KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNI--SFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 184 l~~~----~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~--~f~dLKg~l~~ll~~lfg~ 243 (338)
...+ ..|+|.|.+|.|||.+ ..+-...+|||+.+=++|..- .-+++-.++..+++.+ |+
T Consensus 91 ~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~l-Gi 156 (429)
T COG0124 91 VAENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEAL-GI 156 (429)
T ss_pred HHhccccccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHc-CC
Confidence 8643 4699999999999999 466788999999999988542 2255677777777777 76
|
|
| >TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.3e-05 Score=75.44 Aligned_cols=126 Identities=16% Similarity=0.190 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc-
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI- 186 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~- 186 (338)
....+.+.++++|...||.++.+|.++.. ..|.... +..+ .+.|.+..+ +.+..+||+-+++..+|.+.+
T Consensus 10 ~~~~i~~~l~~~~~~~Gy~~i~tP~le~~-~~~~~~~----~~~~--~~~~~~~d~--~g~~l~LRpD~T~~iaR~~~~~ 80 (314)
T TIGR00443 10 RKEEIERQLQDVFRSWGYQEIITPTLEYL-DTLSAGG----GILN--EDLFKLFDS--LGRVLGLRPDMTTPIARAVSTR 80 (314)
T ss_pred HHHHHHHHHHHHHHHcCCeeccCcchhhH-HHhcccC----Ccch--hceEEEECC--CCCEEeecCcCcHHHHHHHHHh
Confidence 45688999999999999999999999764 3333221 2112 245766554 235579999888889997654
Q ss_pred ---CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 187 ---NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ---~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
...|+|++++|+|||.+ ....+..+|+|+++=+.|.+... .++-.++..+++.+ |.
T Consensus 81 ~~~~~~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~l-g~ 142 (314)
T TIGR00443 81 LRDRPLPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKAL-GL 142 (314)
T ss_pred cccCCCCeEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHHc-CC
Confidence 24699999999999998 45567888999998888764322 34555555666665 64
|
Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit. |
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=84.95 Aligned_cols=135 Identities=17% Similarity=0.157 Sum_probs=87.6
Q ss_pred HHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCC
Q psy9576 84 KVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNR 163 (338)
Q Consensus 84 ~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np 163 (338)
..++....+|..-|. .....--..++...+|++|...||.||.+|.+.... |+. ||+ .+...+-
T Consensus 137 ~~Rl~~RyLDLR~~~---~~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~--------~eG--Ar~---~~~p~~~ 200 (706)
T PRK12820 137 DLRLQYRYLDIRRPA---MQDHLAKRHRIIKCARDFLDSRGFLEIETPILTKST--------PEG--ARD---YLVPSRI 200 (706)
T ss_pred hhhhhCceeecCCHH---HHHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCC--------CCC--Ccc---eEEeeec
Confidence 344455556654332 112223346788999999999999999999997421 111 121 1111110
Q ss_pred ccCCCcceEeccchHHHHHH--HhcCCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 164 YVSNNKPLLRTHTSPMQIRY--SKINKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 164 ~~~~~~~~LRt~lsp~~l~~--l~~~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
...+...|++ ||.+..- |...- -|+|++|+|||.+ .+++|.|||+|+++-++. ++..++...++.+++.+
T Consensus 201 -~~~~~y~L~q--SPQlykq~lm~~G~--~rvfqI~~~FR~E~~~t~r~pEFT~LE~E~af--~d~~dvm~l~E~li~~v 273 (706)
T PRK12820 201 -HPKEFYALPQ--SPQLFKQLLMIAGF--ERYFQLARCFRDEDLRPNRQPEFTQLDIEASF--IDEEFIFELIEELTARM 273 (706)
T ss_pred -CCCcceecCC--CHHHHHHHHHhccC--CcEEEEechhcCCCCCCCcCccccccceeecc--CCHHHHHHHHHHHHHHH
Confidence 0112233554 5766443 23333 3999999999999 577788999999999887 68899999999999877
Q ss_pred c
Q psy9576 241 F 241 (338)
Q Consensus 241 f 241 (338)
|
T Consensus 274 ~ 274 (706)
T PRK12820 274 F 274 (706)
T ss_pred H
Confidence 6
|
|
| >PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00033 Score=70.28 Aligned_cols=173 Identities=11% Similarity=0.093 Sum_probs=100.9
Q ss_pred HHHHHHHHHHh-hCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc---
Q psy9576 111 RTLERIEKIFY-SIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI--- 186 (338)
Q Consensus 111 ~~~~~Ir~~~~-~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~--- 186 (338)
.+++-+++.+. ..||+++.+|.+.+... +..- .|-.+-..+.|.|.+. ..+|+++.=+.+......
T Consensus 175 aL~~~~~~~~~~~~G~~ev~~P~lv~~~~-~~~~----G~~~~f~~~ly~i~~~-----~~~L~pTsE~~l~~l~~~~~~ 244 (425)
T PRK05431 175 ALIQFMLDLHTEEHGYTEVIPPYLVNEES-MYGT----GQLPKFEEDLYKIEDD-----DLYLIPTAEVPLTNLHRDEIL 244 (425)
T ss_pred HHHHHHHHHHHHhcCCEEEeccccccHHH-Hhhc----CccccchhhceEecCC-----CEEEEeCCcHHHHHHHhcccC
Confidence 44555566677 89999999999977643 3322 2222333355677532 257887755545544432
Q ss_pred --CCCCceEEEeeeEEEeCCCC--------CCCcceeEEEEEEEcC----CCCHHHHHHHHHHHHHHhccCCCeeEEEcc
Q psy9576 187 --NKPPIKVITSGRVYRIDSDS--------THSPMFHQIEGLWIDK----NISFSDLKGVYLNFIRVFFESDNIQIRFRP 252 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d~d~--------th~~~f~ql~~l~~g~----~~~f~dLKg~l~~ll~~lfg~~~~~~r~~p 252 (338)
...|++++++|+|||.+..+ ...++|++.++.+... ...+..+....+.+++.| |. ...+-..+
T Consensus 245 s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~L-gl-pyr~v~~~ 322 (425)
T PRK05431 245 DEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKL-EL-PYRVVLLC 322 (425)
T ss_pred CHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEEcC
Confidence 34699999999999998421 2467899999887643 245777888888888887 85 22221223
Q ss_pred CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCC
Q psy9576 253 SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNL 296 (338)
Q Consensus 253 s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi 296 (338)
+...+.-.+.+.|+..+-.. ..+|.|++.|--..--..+.+++
T Consensus 323 s~dlg~~a~~~~DiE~w~p~-~~~~~ev~s~snc~d~qsrr~~i 365 (425)
T PRK05431 323 TGDLGFSAAKTYDLEVWLPS-QNTYREISSCSNCTDFQARRANI 365 (425)
T ss_pred CcccCCchHheecHHHhCcc-cCCeeEEEEecCccchhhhhcCc
Confidence 32222222233333222111 24577777765553334444444
|
|
| >PLN02903 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-05 Score=83.49 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=85.4
Q ss_pred HHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-CCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecC
Q psy9576 84 KVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYS-IGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKN 162 (338)
Q Consensus 84 ~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~-~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~n 162 (338)
+.+++...+|..-|.. ....--..++...+|++|.. .||.||.+|.+.... |+ -+|+.-...++ .
T Consensus 184 e~Rl~~RyLDLR~~~~---q~~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st--------~e--Gardf~v~~~~-~ 249 (652)
T PLN02903 184 EVRLRYRVLDLRRPQM---NANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRST--------PE--GARDYLVPSRV-Q 249 (652)
T ss_pred hhhhccceeecCCHHH---HHHHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCC--------CC--CCcccEEeeec-C
Confidence 3344445555543321 11222346788999999997 999999999996431 11 11211000111 1
Q ss_pred CccCCCcceEeccchHHHHHH--HhcCCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHH
Q psy9576 163 RYVSNNKPLLRTHTSPMQIRY--SKINKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRV 239 (338)
Q Consensus 163 p~~~~~~~~LRt~lsp~~l~~--l~~~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~ 239 (338)
+ .....|+ .||.+..- |.... -|+|++|+|||.+ .++.|.|||+|+++-++. +++.|+..+++.+++.
T Consensus 250 ~---g~~y~L~--qSPQlykQ~Lm~~G~--~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf--~d~~dvm~~~E~li~~ 320 (652)
T PLN02903 250 P---GTFYALP--QSPQLFKQMLMVSGF--DRYYQIARCFRDEDLRADRQPEFTQLDMELAF--TPLEDMLKLNEDLIRQ 320 (652)
T ss_pred C---CcccccC--CCHHHHHHHHHhccC--CcEEEEehhhccCCCCCCcccceeeeeeeecC--CCHHHHHHHHHHHHHH
Confidence 1 1223455 45766543 33333 3999999999999 466777999999998887 4789999999988876
Q ss_pred hc
Q psy9576 240 FF 241 (338)
Q Consensus 240 lf 241 (338)
++
T Consensus 321 v~ 322 (652)
T PLN02903 321 VF 322 (652)
T ss_pred HH
Confidence 65
|
|
| >PLN02972 Histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.7e-05 Score=81.32 Aligned_cols=126 Identities=15% Similarity=0.125 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN 187 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~ 187 (338)
..+.+.+.++++|...||.++.+|.++.. ..|... ..++ ....|.+.++ +.+...||+-+++...|.+..+
T Consensus 343 ~re~I~~~L~~vFk~hGy~eI~TPvfE~~-Ell~~k-~Ged-----~k~mY~f~D~--gGr~LaLRPDlTvPiAR~vA~n 413 (763)
T PLN02972 343 IREKAFSIITSVFKRHGATALDTPVFELR-ETLMGK-YGED-----SKLIYDLADQ--GGELCSLRYDLTVPFARYVAMN 413 (763)
T ss_pred HHHHHHHHHHHHHHHcCCEEccCCcccch-HHhhcc-cCcc-----hhheEEEECC--CCCEEEeCCCChHHHHHHHHhC
Confidence 35678899999999999999999999753 344321 1111 1235666655 3456799999999999988764
Q ss_pred -CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCC---HHHHHHHHHHHHHHhccC
Q psy9576 188 -KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNIS---FSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 188 -~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~---f~dLKg~l~~ll~~lfg~ 243 (338)
..|+|.|.+|+|||.+ ...-+..+|+|+.+=++|..-+ =.++-.++...++.+ |.
T Consensus 414 ~~~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~L-Gi 473 (763)
T PLN02972 414 GITSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDEL-DI 473 (763)
T ss_pred CCCcceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhC-CC
Confidence 4689999999999998 3445678999999999885222 255667777777776 65
|
|
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=3e-05 Score=76.91 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN- 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~- 187 (338)
...+.+.++++|...||.++.+|.++.. ..|..-. .+..+ ...|.+.... +....+||+-+++..+|.+..+
T Consensus 20 ~~~i~~~l~~~f~~~Gy~~i~tP~lE~~-e~~~~~~---g~~~~--~~~~~f~d~~-~g~~l~LRpD~T~~iaR~~a~~~ 92 (391)
T PRK12292 20 IEEIRRRLLDLFRRWGYEEVITPTLEYL-DTLLAGG---GAILD--LRTFKLVDQL-SGRTLGLRPDMTAQIARIAATRL 92 (391)
T ss_pred HHHHHHHHHHHHHHcCCceeeCcchhhH-HHHhccC---Cccch--hhhEEEeecC-CCCEEEECCCCcHHHHHHHHHhc
Confidence 4578899999999999999999999752 3443211 11112 2446654431 2345799999999999987542
Q ss_pred ---CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 188 ---KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 188 ---~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
..|+|+|.+|+|||.+ ....+..+|+|+.+=++|.+... .++-.++..+++.+ |.
T Consensus 93 ~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~l-gl 153 (391)
T PRK12292 93 ANRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKAL-GL 153 (391)
T ss_pred cCCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHc-CC
Confidence 4599999999999998 34567889999999888854222 34555666666666 64
|
|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.5e-05 Score=81.07 Aligned_cols=127 Identities=12% Similarity=0.086 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc-
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI- 186 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~- 186 (338)
-...+.+.+++.+...||+++.+|.+++. ..|..-+ -.+|-.. +-| .... +.+..+||+...|+..+..++
T Consensus 276 ~~~~i~~~~~~~~~~~G~~~v~tP~l~~~-~l~~~sG-~~~~~~~---emy-~~d~--~~~~~~LrP~~~~~~~~~~~~~ 347 (639)
T PRK12444 276 IRNELEAFLREIQKEYNYQEVRTPFMMNQ-ELWERSG-HWDHYKD---NMY-FSEV--DNKSFALKPMNCPGHMLMFKNK 347 (639)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCH-HHHhhcC-Chhhhhh---hcC-eecC--CCcEEEEccCCCHHHHHHHhCc
Confidence 45678999999999999999999999775 3444322 1112111 223 3222 234467999999999988754
Q ss_pred ----CCCCceEEEeeeEEEeCC-CC----CCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHHhccC
Q psy9576 187 ----NKPPIKVITSGRVYRIDS-DS----THSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d~-d~----th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~lfg~ 243 (338)
...|+|++++|.|||.+. .. ....+|+|.++-+.+.. ..+.++...+..+++.+ |.
T Consensus 348 ~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~e~~~~~~~~~~i~~~l-gl 416 (639)
T PRK12444 348 LHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKSVMAQIDYVYKTF-GF 416 (639)
T ss_pred ccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 245999999999999984 22 24678999998877642 22445777778888887 86
|
|
| >KOG0556|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.5e-06 Score=84.28 Aligned_cols=107 Identities=19% Similarity=0.239 Sum_probs=68.7
Q ss_pred hHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeec
Q psy9576 82 QLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIK 161 (338)
Q Consensus 82 ~~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~ 161 (338)
.+..+|....+|...|..... ..-...+....|++|...||.|+.+|-+.+... ..-...|.++
T Consensus 207 n~dtRLdnRvlDLRtptnqAi---Friq~gvc~~FRe~L~~kgF~EIhTpKli~asS-------------EGGanvF~v~ 270 (533)
T KOG0556|consen 207 NLDTRLDNRVLDLRTPTNQAI---FRIQAGVCFAFREYLRSKGFVEIHTPKLIGASS-------------EGGANVFRVS 270 (533)
T ss_pred cccccccceeeecccccchhe---eehHHHHHHHHHHHHHhcCcceecccccccccC-------------CCCceeEEEE
Confidence 345566777777777764332 233456788899999999999999998755321 1111234443
Q ss_pred ---CCccCCCcceEeccchHHHHHHHhcCCCCceEEEeeeEEEeCCCCCC--Ccce
Q psy9576 162 ---NRYVSNNKPLLRTHTSPMQIRYSKINKPPIKVITSGRVYRIDSDSTH--SPMF 212 (338)
Q Consensus 162 ---np~~~~~~~~LRt~lsp~~l~~l~~~~~pirifeiG~Vyr~d~d~th--~~~f 212 (338)
.+ -+| .-||.+.+.|.--..--|+||+|.|||.+.+.|| +-+|
T Consensus 271 Yfk~~------A~L--AQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhltEF 318 (533)
T KOG0556|consen 271 YFKQK------AYL--AQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHLTEF 318 (533)
T ss_pred eccCc------chh--hcChHHHHHHHHhcchhheeeecceeeccccchhhhhHHh
Confidence 33 233 4568888877643334499999999999854444 4444
|
|
| >PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.8e-05 Score=73.52 Aligned_cols=125 Identities=15% Similarity=0.157 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc-
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI- 186 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~- 186 (338)
.+..+.+.++++|...||.++.+|.++.. ..|....-+. .+ ...|.+.++ +....+||+-+++...|....
T Consensus 6 ~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~-e~~~~~~g~~---~~--~~~~~f~D~--~G~~l~LRpD~T~piaR~~~~~ 77 (373)
T PRK12295 6 ASAAAAEALLASFEAAGAVRVDPPILQPA-EPFLDLSGED---IR--RRIFVTSDE--NGEELCLRPDFTIPVCRRHIAT 77 (373)
T ss_pred hHHHHHHHHHHHHHHcCCEEeeCCccccH-HHhhhccCch---hh--cceEEEECC--CCCEEeeCCCCcHHHHHHHHHc
Confidence 45688999999999999999999999763 3443221111 11 234666555 234579999999999987543
Q ss_pred -CCCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEcCCC---CHHHHHHHHHHHHHHhccC
Q psy9576 187 -NKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNI---SFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 -~~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g~~~---~f~dLKg~l~~ll~~lfg~ 243 (338)
...|.|+|.+|+|||.+ .-...+|+|+.+=++|..- .=.++-.++...++.+ |.
T Consensus 78 ~~~~p~R~~Y~g~VfR~~--~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l-gl 135 (373)
T PRK12295 78 AGGEPARYAYLGEVFRQR--RDRASEFLQAGIESFGRADPAAADAEVLALALEALAAL-GP 135 (373)
T ss_pred CCCCCeEEEEEccEEECC--CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc-CC
Confidence 35699999999999987 3356789999998888532 2346777777778887 75
|
|
| >cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=7e-05 Score=71.61 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=88.7
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.-.+.+.+.+++.+...||+++.+|.++.. ..|..- .|-..-..+.|.+... .+..+||+.+.|...+..+.
T Consensus 31 ~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~-~l~~~s----g~~~~~~~~my~~~~~---~~~l~LRP~~~~~~~~~~~~ 102 (298)
T cd00771 31 IIRNELEDFLRELQRKRGYQEVETPIIYNK-ELWETS----GHWDHYRENMFPFEEE---DEEYGLKPMNCPGHCLIFKS 102 (298)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeecCH-HHHhhC----CCccccccCceEeccC---CceEEEcccCCHHHHHHHHh
Confidence 345678888999999999999999999765 344432 2322222345666432 24479999988988776643
Q ss_pred -----CCCCceEEEeeeEEEeCC-CC----CCCcceeEEEEEEEcCC-CC---HHHHHHHHHHHHHHhccC
Q psy9576 187 -----NKPPIKVITSGRVYRIDS-DS----THSPMFHQIEGLWIDKN-IS---FSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d~-d~----th~~~f~ql~~l~~g~~-~~---f~dLKg~l~~ll~~lfg~ 243 (338)
...|+|++++|+|||.+. .. ....+|+|.++-+.+.. -. +.++..++..+++.+ |.
T Consensus 103 ~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~l-gl 172 (298)
T cd00771 103 KPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDF-GF 172 (298)
T ss_pred hccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHc-CC
Confidence 246999999999999983 22 34578999999877533 22 234666777777777 75
|
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >PLN02530 histidine-tRNA ligase | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.2e-05 Score=78.84 Aligned_cols=126 Identities=13% Similarity=0.205 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN- 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~- 187 (338)
.+.+.+.++++|...||+++.+|.++.. ..|.+-.-+ .. ..+.|.+.+. +....+||+-++|...|.+..+
T Consensus 87 ~~~i~~~~~~~~~~~Gy~~I~tP~lE~~-el~~~~~g~--~~---~~~~y~f~D~--~g~~l~LRpD~T~~iaR~~~~~~ 158 (487)
T PLN02530 87 RNWLFDHFREVSRLFGFEEVDAPVLESE-ELYIRKAGE--EI---TDQLYNFEDK--GGRRVALRPELTPSLARLVLQKG 158 (487)
T ss_pred HHHHHHHHHHHHHHcCCEeccccccchH-HHhccccCc--cc---ccceEEEECC--CCCEEecCCCCcHHHHHHHHhcc
Confidence 5678899999999999999999999763 445432111 11 1244665544 2445799999999999988542
Q ss_pred ---CCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCC--CHHHHHHHHHHHHHHhccC
Q psy9576 188 ---KPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNI--SFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 188 ---~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~--~f~dLKg~l~~ll~~lfg~ 243 (338)
..|+|+|.+|+|||.+. ...+..+|+|+.+=+.|.+- .=.++-.++..+++.+ |.
T Consensus 159 ~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~l-gl 219 (487)
T PLN02530 159 KSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRV-GI 219 (487)
T ss_pred cccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCCcchhHHHHHHHHHHHHHc-CC
Confidence 36999999999999983 44567899998887777432 1234555666666666 64
|
|
| >PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.1e-05 Score=74.14 Aligned_cols=130 Identities=12% Similarity=0.157 Sum_probs=90.2
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.-...+.+.++++|...||.++.+|.++.. ..|..-. ......+ ..+|.+.++ +....+||+-+++...|.+..
T Consensus 19 ~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~-~~~~~~~-~~~~~~~--~~~~~~~D~--~g~~l~LRpD~T~~iaR~va~ 92 (423)
T PRK12420 19 VLRNKIKRALEDVFERYGCKPLETPTLNMY-ELMSSKY-GGGDEIL--KEIYTLTDQ--GKRDLALRYDLTIPFAKVVAM 92 (423)
T ss_pred HHHHHHHHHHHHHHHHcCCEeccccccchH-HHHhccc-CCCcccc--cceEEEecC--CCceecccccccHHHHHHHHh
Confidence 345788999999999999999999999753 3332210 1111111 245776655 244579999999999998765
Q ss_pred C---CCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCC--CHHHHHHHHHHHHHHhccC
Q psy9576 187 N---KPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNI--SFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ~---~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~--~f~dLKg~l~~ll~~lfg~ 243 (338)
+ ..|+|.|.+|+|||.+. ..-+..+|+|+.+=++|.+- .=.++-.++...++.+ |.
T Consensus 93 ~~~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~l-g~ 154 (423)
T PRK12420 93 NPNIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRL-NL 154 (423)
T ss_pred CcCCCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHC-CC
Confidence 3 34999999999999873 45678899999998887531 1144555555666665 54
|
|
| >PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.6e-05 Score=71.73 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN 187 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~ 187 (338)
....+.+.++++|...||+++.+|.++.. ..+.. . ...+.|.+..+ +.+..+||+-+++...|.+..+
T Consensus 21 ~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~-e~~~~---~------~~~~~y~~~D~--~g~~l~LRpD~T~~iaR~~a~~ 88 (281)
T PRK12293 21 LKREIENVASEILYENGFEEIVTPFFSYH-QHQSI---A------DEKELIRFSDE--KNHQISLRADSTLDVVRIVTKR 88 (281)
T ss_pred HHHHHHHHHHHHHHHcCCeEeeccceeeh-hhhcc---c------chhceEEEECC--CCCEEEECCcCCHHHHHHHHHh
Confidence 34677889999999999999999999632 22211 1 11345776655 3456799999999999987542
Q ss_pred ----CCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccC
Q psy9576 188 ----KPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 188 ----~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~ 243 (338)
..|.|++.+|+|||.+. .||+|+..=++|... ..++-.++...++.+ |.
T Consensus 89 ~~~~~~p~r~~Y~g~vfR~~~-----rEf~Q~GvEliG~~~-~~Evi~la~~~l~~l-gl 141 (281)
T PRK12293 89 LGRSTEHKKWFYIQPVFRYPS-----NEIYQIGAELIGEED-LSEILNIAAEIFEEL-EL 141 (281)
T ss_pred cccCCCceeEEEeccEEecCC-----CcccccCeEeeCCCC-HHHHHHHHHHHHHHc-CC
Confidence 35899999999999852 589999988888643 467888888888777 74
|
|
| >PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00025 Score=73.65 Aligned_cols=129 Identities=8% Similarity=0.101 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.-.+.+.+.+++.|...||+++.+|.+++. ..|..= .|-..-..+.|.+.+. ..+..+||++.-+.....++.
T Consensus 48 ~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~-~l~~~s----g~~~~~~~emf~~~d~--~~~~l~LrPt~e~~~~~~~~~ 120 (565)
T PRK09194 48 RVLRKIENIVREEMNKIGAQEVLMPALQPA-ELWQES----GRWEEYGPELLRLKDR--HGRDFVLGPTHEEVITDLVRN 120 (565)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECcccCcH-HHHhhc----CCccccchhceEEecC--CCCEEEECCCChHHHHHHHHh
Confidence 346788999999999999999999999765 334321 2222222245777554 234579999665555444422
Q ss_pred -----CCCCceEEEeeeEEEeC-CCCC---CCcceeEEEEEEEcCC-----CCHHHHHHHHHHHHHHhccC
Q psy9576 187 -----NKPPIKVITSGRVYRID-SDST---HSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d-~d~t---h~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg~ 243 (338)
...|+|++.+|+|||.+ .... ...+|+|.++...+.+ ..+..+..+...+++.+ |.
T Consensus 121 ~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~l-gl 190 (565)
T PRK09194 121 EIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRL-GL 190 (565)
T ss_pred hhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHh-CC
Confidence 34699999999999998 4322 5789999999999853 23445666778888887 85
|
|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.6e-05 Score=78.90 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=92.6
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.-.+.+.+.+++.+...||+++.+|.++.. ..|..-+ .-++-.. +.|.+... +.+..+||+.+.|+..+....
T Consensus 271 ~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~-~l~~~~g-~~~~~~~---~my~~~d~--~~~~~~LRP~~~~~~~r~~~~ 343 (638)
T PRK00413 271 TIRRELERYIRRKLRKAGYQEVKTPQILDR-ELWETSG-HWDHYRE---NMFPTTES--DGEEYALKPMNCPGHVQIYKQ 343 (638)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCeeCCH-HHHHhcC-Chhhhhh---ccceeecC--CCcEEEEecCCcHHHHHHHhC
Confidence 346788899999999999999999999765 3454321 1022112 33555433 345579999999998888754
Q ss_pred C-----CCCceEEEeeeEEEeCC-CC----CCCcceeEEEEEEEcCCC----CHHHHHHHHHHHHHHhccC
Q psy9576 187 N-----KPPIKVITSGRVYRIDS-DS----THSPMFHQIEGLWIDKNI----SFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ~-----~~pirifeiG~Vyr~d~-d~----th~~~f~ql~~l~~g~~~----~f~dLKg~l~~ll~~lfg~ 243 (338)
+ ..|+|++++|+|||.+. .+ ....+|+|.++-+.|..- .+.++..+...+++.+ |.
T Consensus 344 ~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~eii~l~~~~~~~l-g~ 413 (638)
T PRK00413 344 GLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDF-GF 413 (638)
T ss_pred cCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 2 35999999999999983 22 245799999998887532 3466888888888887 86
|
|
| >PLN02320 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0009 Score=68.06 Aligned_cols=173 Identities=15% Similarity=0.182 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcC-CCCCCCCCcCccceeecCCccCCCcceEeccchHHH----HHHH
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALN-SPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ----IRYS 184 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~-~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~----l~~l 184 (338)
..+++-+++.....||+++.+|.+..... +..=+ .|. .+..+.+.|.+ +++.++-|+=.|.. -+.+
T Consensus 237 ~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l-~~~sG~~p~----~e~~~~y~ie~----ed~~Li~TaE~Pl~~~~~~~il 307 (502)
T PLN02320 237 MALVNWTLSEVMKKGFTPLTTPEIVRSSV-VEKCGFQPR----GDNTQVYSIDG----SDQCLIGTAEIPVGGIHMDSIL 307 (502)
T ss_pred HHHHHHHHHHHHHcCCEEEECCccchHHH-HHhcCCCcc----cccCceeEECC----CceEEeeccccccccccccccc
Confidence 45566677777888999999999977643 33333 222 11114455533 34455555533322 2222
Q ss_pred hcCCCCceEEEeeeEEEeCCC--------CCCCcceeEEEEEEEcC----CCCHHHHHHHHHHHHHHhccCCCee-EEEc
Q psy9576 185 KINKPPIKVITSGRVYRIDSD--------STHSPMFHQIEGLWIDK----NISFSDLKGVYLNFIRVFFESDNIQ-IRFR 251 (338)
Q Consensus 185 ~~~~~pirifeiG~Vyr~d~d--------~th~~~f~ql~~l~~g~----~~~f~dLKg~l~~ll~~lfg~~~~~-~r~~ 251 (338)
+....|+|+++.|.|||++.. -...++|++++..+.=. .--|..+...++.+++.| |. ... +...
T Consensus 308 s~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~L-gL-pyrvv~l~ 385 (502)
T PLN02320 308 LESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSL-GL-HFKTLDMA 385 (502)
T ss_pred CHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHc-CC-CeEEEEec
Confidence 334579999999999999832 23456788888776522 234677778888888887 85 222 2222
Q ss_pred cCCCCCCCCceEEEEEee-cCCCCCCCeeEeeeeecCHHHhhhCCC
Q psy9576 252 PSYFPFTEPSAEIDIVFQ-DGPLKGNWLEISGAGQVNPKVLCNMNL 296 (338)
Q Consensus 252 ps~fpf~~Ps~e~~i~~~-~g~~~~gwieig~~G~vhP~Vl~~~gi 296 (338)
....-|. .+...||.++ -| ...|.||.-|--..-=..+.++|
T Consensus 386 tgDLg~~-a~kkyDiEvW~P~--~~~y~EvsS~SNc~DfQaRRl~i 428 (502)
T PLN02320 386 TADLGAP-AYRKFDIEAWMPG--LGRYGEISSASNCTDYQSRRLGI 428 (502)
T ss_pred CCccchh-hhheEEEEEEecC--CCcEEEEeeecchhhHhhhcccc
Confidence 2222222 2244455544 22 24588888776544434444444
|
|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.9e-05 Score=77.86 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHh
Q psy9576 106 LHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSK 185 (338)
Q Consensus 106 ~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~ 185 (338)
..-.+.+.+.+++.+...||+++.+|.+++. ..|.+- .|-.....+.|.+... +.+..+||+.+.|+..+...
T Consensus 206 ~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~-~l~~~s----g~~~~~~~~my~~~d~--~~~~~~LRP~~~~~~~~~~~ 278 (575)
T PRK12305 206 AIIRREIEDYLRKEHLKRGYEFVYTPHIGKS-DLWKTS----GHLDNYKENMFPPMEI--DEEEYYLKPMNCPGHILIYK 278 (575)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCH-HHHhhc----CCcccchhhccccccc--CCceEEEecCCCHHHHHHHh
Confidence 3346788999999999999999999999765 445542 2211111233555333 23557999999998888765
Q ss_pred cC-----CCCceEEEeeeEEEeCC-CC----CCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHHhccC
Q psy9576 186 IN-----KPPIKVITSGRVYRIDS-DS----THSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 186 ~~-----~~pirifeiG~Vyr~d~-d~----th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~lfg~ 243 (338)
.. ..|+|++++|+|||.+. .+ ....+|+|.++-+.+.. -.+.++..++..+++.+ |.
T Consensus 279 ~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~e~~e~i~l~~~~~~~l-gl 349 (575)
T PRK12305 279 SRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDF-GF 349 (575)
T ss_pred cccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 42 35999999999999983 22 35579999999888642 12367778888888887 86
|
|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00011 Score=76.29 Aligned_cols=129 Identities=12% Similarity=0.071 Sum_probs=92.4
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.-.+.+.+.+++.+...||+++.+|.+++. ..|..-+ |-..-..+.|.+... +.+..+||+...|+..+....
T Consensus 201 ~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~-~l~~~sg----~~~~~~~emy~~~d~--~~~~~~LrP~~~~~i~~~~~~ 273 (563)
T TIGR00418 201 TIRNLLEDFVRQKQIKYGYMEVETPIMYDL-ELWEISG----HWDNYKERMFPFTEL--DNREFMLKPMNCPGHFLIFKS 273 (563)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccCCH-HHHHhcC----CcccchhhcceeccC--CCceEEEecCCCHHHHHHHhC
Confidence 346788999999999999999999999854 4555422 221112234555443 234579999999999888754
Q ss_pred C-----CCCceEEEeeeEEEeCCCC-----CCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHHhccC
Q psy9576 187 N-----KPPIKVITSGRVYRIDSDS-----THSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ~-----~~pirifeiG~Vyr~d~d~-----th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~lfg~ 243 (338)
. ..|+|++++|+|||.+... ....+|+|.++-+.+.. ..+.++......+++.+ |.
T Consensus 274 ~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~~~~~~e~~~~i~~~~~~~~~l-gl 343 (563)
T TIGR00418 274 SLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYSDF-GF 343 (563)
T ss_pred cCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 2 3599999999999998322 25678999999888642 23455777788888887 86
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether.. |
| >TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00052 Score=71.31 Aligned_cols=129 Identities=9% Similarity=0.091 Sum_probs=88.9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEecc----chHHHHH
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTH----TSPMQIR 182 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~----lsp~~l~ 182 (338)
.-.+.+.+.+++.|...||+|+..|.+++. ..+..-+ |-.....+.|.+... ..+..+||++ +++...+
T Consensus 48 rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~-el~~~sg----~~~~~~~emf~~~dr--~~~~l~LrPT~Ee~~t~~~~~ 120 (568)
T TIGR00409 48 RVLKKVENIVREEMNKDGAIEVLLPALQPA-ELWQESG----RWDTYGPELLRLKDR--KGREFVLGPTHEEVITDLARN 120 (568)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccchH-HHHhhcC----CCCccchhcEEEecC--CCCEEEEcCCCcHHHHHHHHH
Confidence 356788999999999999999999999873 3443321 111111245777654 2345799996 4544444
Q ss_pred HHhc-CCCCceEEEeeeEEEeC-CCC---CCCcceeEEEEEEEcCC-----CCHHHHHHHHHHHHHHhccC
Q psy9576 183 YSKI-NKPPIKVITSGRVYRID-SDS---THSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 183 ~l~~-~~~pirifeiG~Vyr~d-~d~---th~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg~ 243 (338)
.+.. ...|+|++.+|+|||.+ ... ....+|+|.++...+.+ ..+..+......+++.+ |+
T Consensus 121 ~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~L-gL 190 (568)
T TIGR00409 121 EIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRL-GL 190 (568)
T ss_pred HHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHh-CC
Confidence 4433 45799999999999998 432 25789999999999864 23444556668888888 85
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi. |
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.5e-05 Score=76.40 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=36.6
Q ss_pred ceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHH
Q psy9576 191 IKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIR 238 (338)
Q Consensus 191 irifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~ 238 (338)
-|+||+|+|||.+ . +.+|++||+++++-++.. ++.|+..+++.+++
T Consensus 327 ~rVfeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~--d~~dvm~l~E~lv~ 374 (572)
T PLN02221 327 SSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFA--DLEDDMNCAEAYVK 374 (572)
T ss_pred CCeEEEccceecCCCCCCcccccccceeeeeecC--CHHHHHHHHHHHHH
Confidence 3999999999999 4 689999999999987753 56666666665553
|
|
| >cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00084 Score=63.15 Aligned_cols=132 Identities=12% Similarity=0.053 Sum_probs=87.1
Q ss_pred CChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCcc--CCCcceEeccchHHHHHH
Q psy9576 106 LHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV--SNNKPLLRTHTSPMQIRY 183 (338)
Q Consensus 106 ~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~--~~~~~~LRt~lsp~~l~~ 183 (338)
..-.+++.+.+++.+...||+++.+|.+++.. .+..-+ .||.-...+.+.+..... .++..+||++..+.+...
T Consensus 32 ~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~-~~~~~g---~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~ 107 (264)
T cd00772 32 KAILDKIENVLDKMFKEHGAQNALFPFFILAS-FLEKEA---EHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEI 107 (264)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCeeccHH-HHhhcC---CcccccCccceEEEeCCCCccCceEEECCCCCHHHHHH
Confidence 34567888999999999999999999997753 343322 233211123355532210 014468999987777665
Q ss_pred Hhc-----CCCCceEEEeeeEEEeC-CCCC---CCcceeEEEEEEEcCC-----CCHHHHHHHHHHHHHHhcc
Q psy9576 184 SKI-----NKPPIKVITSGRVYRID-SDST---HSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFIRVFFE 242 (338)
Q Consensus 184 l~~-----~~~pirifeiG~Vyr~d-~d~t---h~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg 242 (338)
.+. ...|+|++.+|+|||.+ .+.. ...+|+|.++...+.+ ..+..+....+.+++.+ |
T Consensus 108 ~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~~i~~~l-~ 179 (264)
T cd00772 108 AAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDL-A 179 (264)
T ss_pred HHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 533 35699999999999998 4422 5678999998887522 23444555567777777 6
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00028 Score=71.78 Aligned_cols=201 Identities=14% Similarity=0.176 Sum_probs=115.2
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCcc--CCCcceEeccchHHHHHHH
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV--SNNKPLLRTHTSPMQIRYS 184 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~--~~~~~~LRt~lsp~~l~~l 184 (338)
.-...+.+.+++.+...||+++.+|.+.+.. .+.. ...|-..-..+.|.+..... .++..+||++..+.+....
T Consensus 39 ~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~-~~~~---~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~ 114 (472)
T TIGR00408 39 KIWKNIQKILRNILDEIGHEEVYFPMLIPES-ELAK---EKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMF 114 (472)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccCCHH-HHHh---hcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHH
Confidence 3467888899999999999999999997653 2332 12233211124577754310 0245799999888887555
Q ss_pred hc-----CCCCceEEEeeeEEEeCC-C---CCCCcceeEEEEEEEc--C---CCCHHHHHHHHHHHHH-HhccCCCeeEE
Q psy9576 185 KI-----NKPPIKVITSGRVYRIDS-D---STHSPMFHQIEGLWID--K---NISFSDLKGVYLNFIR-VFFESDNIQIR 249 (338)
Q Consensus 185 ~~-----~~~pirifeiG~Vyr~d~-d---~th~~~f~ql~~l~~g--~---~~~f~dLKg~l~~ll~-~lfg~~~~~~r 249 (338)
++ ...|+|++++|+|||.+. . -....+|.|.++-.+. . .-.+..+......+++ .| |. .....
T Consensus 115 ~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y~~i~~~~l-gl-p~~~~ 192 (472)
T TIGR00408 115 KKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYKEFIENSL-AI-PYFVG 192 (472)
T ss_pred hccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhcc-CC-eEEEE
Confidence 33 357999999999999984 3 2345677777773222 1 1235566677777777 55 85 33222
Q ss_pred EccC--CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC-----CCCeEEEEEeech-hHHHHHH
Q psy9576 250 FRPS--YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD-----PEKYIGFAFGSGL-ERLTMLR 317 (338)
Q Consensus 250 ~~ps--~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~-----~~~~~~~afelgl-erlam~~ 317 (338)
.+|. -|+...-...+++...+ +.++++|.+--+.-.--+++++. .+...++-+.+|+ +|+....
T Consensus 193 ~~~~~ek~~ga~~~~~~e~~~~d----gr~~q~~t~~~Lg~~~sk~f~i~y~~~~g~~~~~h~~s~Gi~eRli~~l 264 (472)
T TIGR00408 193 RKPEWEKFAGAEYTWAFETIMPD----GRTLQIATSHNLGQNFAKTFEIKFETPTGDKEYAYQTSYGISTRVIGAL 264 (472)
T ss_pred ecCchhhcCCccceEEEeEEEcC----CCEEEEeeeecccccccHhcCCEEECCCCCEEeeEEccccHHHHHHHHH
Confidence 2332 22222222333443312 23567765443333334455553 1112333355666 9977655
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. |
| >cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00037 Score=65.41 Aligned_cols=182 Identities=11% Similarity=0.112 Sum_probs=102.7
Q ss_pred CChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccC--CCcceEeccchHHHHHH
Q psy9576 106 LHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS--NNKPLLRTHTSPMQIRY 183 (338)
Q Consensus 106 ~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~--~~~~~LRt~lsp~~l~~ 183 (338)
..-.+.+.+.+++.+...||+++.+|.+.+.. .+.. ...|-..-..+.|.+.+.... ++..+||++.=+.+...
T Consensus 32 ~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~-~~~~---~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~ 107 (261)
T cd00778 32 YAIWENIQKILDKEIKETGHENVYFPLLIPES-ELEK---EKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPM 107 (261)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccccHH-Hhhh---hhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHH
Confidence 34466788889999999999999999997642 2211 011221111244666442101 23478999844444333
Q ss_pred H-----hcCCCCceEEEeeeEEEeCC-C---CCCCcceeEEEEEEE--cC---CCCHHHHHHHHHHHHHHhccCCCeeEE
Q psy9576 184 S-----KINKPPIKVITSGRVYRIDS-D---STHSPMFHQIEGLWI--DK---NISFSDLKGVYLNFIRVFFESDNIQIR 249 (338)
Q Consensus 184 l-----~~~~~pirifeiG~Vyr~d~-d---~th~~~f~ql~~l~~--g~---~~~f~dLKg~l~~ll~~lfg~~~~~~r 249 (338)
. +.+..|+|++++|+|||.+. + .....+|.+.++... .. ...+.++....+.+++.++|. ...+-
T Consensus 108 ~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~~~i~~~llgl-~~~~~ 186 (261)
T cd00778 108 FSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLYKEFYEDLLAI-PVVKG 186 (261)
T ss_pred HHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEe
Confidence 3 22457999999999999994 3 345668888888432 22 234666777777777776685 23222
Q ss_pred EccC--CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCC
Q psy9576 250 FRPS--YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNL 296 (338)
Q Consensus 250 ~~ps--~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi 296 (338)
.+|+ -+....-...+++.+. .+.+.||+.|-.+.-..-++++|
T Consensus 187 ~~~~~d~~~~a~~~~~ie~~~p----~~~~~ev~s~~~l~~~~s~r~~i 231 (261)
T cd00778 187 RKTEWEKFAGADYTYTIEAMMP----DGRALQSGTSHNLGQNFSKAFDI 231 (261)
T ss_pred cCCccccCCCCccceEEEEEee----CCCEEEEEeccccccccchhcCC
Confidence 2332 1111111233344431 23356877764444444445555
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria. |
| >cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00014 Score=67.90 Aligned_cols=119 Identities=18% Similarity=0.143 Sum_probs=81.0
Q ss_pred ChHHHHHHHHHHHHhhCC--CeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH---
Q psy9576 107 HPIMRTLERIEKIFYSIG--FDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI--- 181 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~G--F~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l--- 181 (338)
.-.+.+.+.+++.|...| |+++.+|.+++. .-|. ..+- |. +. .....+||+-|.++..
T Consensus 33 ~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~-~mf~-~~~g---~~----------d~--~~~~~~Lrp~~~~~~~~~~ 95 (254)
T cd00774 33 ELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE-LMFK-TSIG---PV----------ES--GGNLGYLRPETAQGIFVNF 95 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEeccccCCH-HHhe-eeec---cc----------CC--CCcccccCCcccchHHHHH
Confidence 446788999999999996 999999999876 1121 1110 00 00 1123689998886544
Q ss_pred -HHHh-c-CCCCceEEEeeeEEEeCC-CC---CCCcceeEEEEEEEcCCC----CHHHHHHHHHHHHHHhccC
Q psy9576 182 -RYSK-I-NKPPIKVITSGRVYRIDS-DS---THSPMFHQIEGLWIDKNI----SFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 182 -~~l~-~-~~~pirifeiG~Vyr~d~-d~---th~~~f~ql~~l~~g~~~----~f~dLKg~l~~ll~~lfg~ 243 (338)
+... . ...|++++++|+|||++. .. ....+|.|.++-+.+..- .+...+.....++..+ |.
T Consensus 96 ~~~~~~~~~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~-G~ 167 (254)
T cd00774 96 KNLLEFNRRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKF-AQ 167 (254)
T ss_pred HHHHHHhCCCCCchhhhhchhhccccCcccceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHc-CC
Confidence 3332 2 367999999999999994 22 577899999988876432 2566777777777776 74
|
GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly |
| >PRK08661 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0017 Score=66.19 Aligned_cols=180 Identities=13% Similarity=0.142 Sum_probs=102.7
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCcc--CCCcceEeccchHHHH---
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV--SNNKPLLRTHTSPMQI--- 181 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~--~~~~~~LRt~lsp~~l--- 181 (338)
.-...+.+.+++.|...||+++.+|.+.+.. .+.. ...|-..-..+.|.+..... .++..+||++.=+.+.
T Consensus 45 ~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~-~~~~---~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~ 120 (477)
T PRK08661 45 AIWENIQKILDKLFKETGHENVYFPLLIPES-LLEK---EKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMY 120 (477)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccCCHH-HHhh---hcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHH
Confidence 3457888899999999999999999997653 2221 12333111124466643210 1345799998744333
Q ss_pred -HHHhc-CCCCceEEEeeeEEEeCCCC---CCCcceeEEEEEEEcC-----CCCHHHHHHHHHHHH-HHhccCCCeeEEE
Q psy9576 182 -RYSKI-NKPPIKVITSGRVYRIDSDS---THSPMFHQIEGLWIDK-----NISFSDLKGVYLNFI-RVFFESDNIQIRF 250 (338)
Q Consensus 182 -~~l~~-~~~pirifeiG~Vyr~d~d~---th~~~f~ql~~l~~g~-----~~~f~dLKg~l~~ll-~~lfg~~~~~~r~ 250 (338)
+.+.+ +..|+|++.+|+|||.+... ....+|.+.++-.... .-.+..+......++ +.| |. ....-.
T Consensus 121 ~~~i~SyrdLPlrl~q~~~vfR~E~~~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y~~i~~~~L-gl-p~~~~~ 198 (477)
T PRK08661 121 KKWIQSYRDLPLLYNQWVNVVRWETKTRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEFFEDYL-AI-PVIIGK 198 (477)
T ss_pred HhhhcchhhcCHHHhcccceeeCCCCCCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHHHHHHHHhc-CC-eEEEEe
Confidence 33332 45799999999999999421 2456788888744321 123556666777777 454 85 222222
Q ss_pred ccC--CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCC
Q psy9576 251 RPS--YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNL 296 (338)
Q Consensus 251 ~ps--~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi 296 (338)
+|. -|+.......+++...+ +..+++|.+-.+.-..-+++++
T Consensus 199 ~~~~ekf~ga~~~~~ie~~~~d----gr~~q~gt~~~Lg~~~s~~f~i 242 (477)
T PRK08661 199 KTEWEKFAGADYTYTIEAMMPD----GKALQAGTSHYLGQNFAKAFDI 242 (477)
T ss_pred cChHHhhCCCcceeEEEEEeCC----CCEEEEEEecccccchhHhcCC
Confidence 332 23333333444544412 2235666554444444455565
|
|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00068 Score=70.02 Aligned_cols=127 Identities=14% Similarity=0.109 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc-
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI- 186 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~- 186 (338)
-.+.+.+.+++.+...||++|.+|.+.... -+.. ..|-..-..+.|.+.. ..+...||+...|...+...+
T Consensus 170 i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~e-L~k~----SGh~~~y~~~mf~~~~---~~e~~~LrPm~cp~~~~~~~~~ 241 (545)
T PRK14799 170 IRNELIAFMREINDSMGYQEVYTSHVFKTD-IWKI----SGHYTLYRDKLIVFNM---EGDEYGVKPMNCPAHILIYKSK 241 (545)
T ss_pred HHHHHHHHHHHHHHHcCCeEEECCccchHH-HHhh----ccccccchhhcceeec---cCceEEeccCCCHHHHHHHhcc
Confidence 356788999999999999999999986542 2322 2232111112233322 234579999999999887754
Q ss_pred ----CCCCceEEEeeeEEEeC-CCC----CCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHHhccC
Q psy9576 187 ----NKPPIKVITSGRVYRID-SDS----THSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d-~d~----th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~lfg~ 243 (338)
+..|+|++++|+|||.+ ... ....+|+|.++=+.+.. ..+.++-.++..+++.+ |.
T Consensus 242 ~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~f-G~ 310 (545)
T PRK14799 242 PRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVWHKF-GF 310 (545)
T ss_pred ccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHh-CC
Confidence 24699999999999999 443 56788998776555432 12234444555666665 75
|
|
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00059 Score=67.90 Aligned_cols=111 Identities=19% Similarity=0.254 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH-HHhcC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR-YSKIN 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~-~l~~~ 187 (338)
.+.+...+|++|.+.||.||.+|.+++... + ...+.|.++-- ..+ -.-+-||++-. ++...
T Consensus 137 rs~i~~a~~eff~~~gF~eV~tP~i~~~~~-------E------Gg~elF~v~yf--~~~---a~LtqS~QLyke~~~~a 198 (435)
T COG0017 137 RSSILRAIREFFYENGFTEVHTPIITASAT-------E------GGGELFKVDYF--DKE---AYLTQSPQLYKEALAAA 198 (435)
T ss_pred HHHHHHHHHHHHHhCCcEEecCceEeccCC-------C------CCceeEEEeec--Ccc---eEEecCHHHHHHHHHHH
Confidence 356788899999999999999999987532 1 11245665422 111 22255566543 33322
Q ss_pred CCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 188 KPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
=-|+|++|.+||.+ + ...|+.||+|++.=+.. +++.|+..+++.+++++|
T Consensus 199 --l~rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf--~~~~d~m~l~E~~i~~i~ 250 (435)
T COG0017 199 --LERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAF--ADLNDVMDLAEELIKYLF 250 (435)
T ss_pred --hCceEEecCceecCCCCCcchhhhHheecceecc--CcHHHHHHHHHHHHHHHH
Confidence 23999999999999 4 47899999999977665 346777777776665443
|
|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00098 Score=70.80 Aligned_cols=128 Identities=15% Similarity=0.153 Sum_probs=87.9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.-.+.+.+.+++.+...||++|.+|.+.+.. .+.. ..|-..-..+-|.++. ..+...||+...|+......+
T Consensus 322 ~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~-l~~~----sGh~~~~~~~mf~~~~---~~~~~~Lrp~~~~~~~~~~~~ 393 (686)
T PLN02908 322 RIYNKLMDFIREQYWERGYDEVITPNIYNMD-LWET----SGHAAHYKENMFVFEI---EKQEFGLKPMNCPGHCLMFAH 393 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccccHH-HHhh----cCCccccchhccEEec---CCeeEEEcCCCcHHHHHHHhc
Confidence 3457889999999999999999999997653 3332 2232211112344422 234479999999999876643
Q ss_pred -----CCCCceEEEeeeEEEeC-C----CCCCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHHhccC
Q psy9576 187 -----NKPPIKVITSGRVYRID-S----DSTHSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d-~----d~th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~lfg~ 243 (338)
...|+|++++|+|||++ . ..+...+|+|.++-+.+.. ..+.++...+..+++.+ |.
T Consensus 394 ~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~l-G~ 463 (686)
T PLN02908 394 RVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVF-GF 463 (686)
T ss_pred cccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 24699999999999999 4 2356788999999887652 22344555666666665 75
|
|
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0041 Score=63.24 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCC-----CCCCcCccceeecCCccCCCcceEeccchHHHHHHH
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKN-----HPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYS 184 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~-----hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l 184 (338)
.++...||++|...||.|+.||.++-+ .|+. -|+|.-...||-.+ -||++.+-|
T Consensus 145 ~kv~~~iR~~ld~~gF~EiETPiLtkS--------TPEGARDfLVPSRv~~G~FYALP-------------QSPQlfKQL 203 (585)
T COG0173 145 SKVTKAIRNFLDDQGFLEIETPILTKS--------TPEGARDFLVPSRVHPGKFYALP-------------QSPQLFKQL 203 (585)
T ss_pred HHHHHHHHHHHhhcCCeEeecCccccC--------CCccccccccccccCCCceeecC-------------CCHHHHHHH
Confidence 577888999999999999999999653 2332 24444334455222 247777654
Q ss_pred --hcCCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhcc
Q psy9576 185 --KINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242 (338)
Q Consensus 185 --~~~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg 242 (338)
..+- -|+|-|.+|||-+. -+-..|||.|++.=++- ++=.|+..+++.+++.+|.
T Consensus 204 LMvsGf--dRYyQIarCFRDEDlRaDRQPEFTQiD~EmSF--~~~edv~~~~E~l~~~vf~ 260 (585)
T COG0173 204 LMVAGF--DRYYQIARCFRDEDLRADRQPEFTQIDLEMSF--VDEEDVMELIEKLLRYVFK 260 (585)
T ss_pred HHHhcc--cceeeeeeeecccccccccCCcceeEeEEeec--CCHHHHHHHHHHHHHHHHH
Confidence 3333 38999999999873 24456999999875542 3447788888888876654
|
|
| >PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0032 Score=63.46 Aligned_cols=130 Identities=13% Similarity=0.089 Sum_probs=85.7
Q ss_pred CChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHH-
Q psy9576 106 LHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYS- 184 (338)
Q Consensus 106 ~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l- 184 (338)
..-.+.+.+.+++.+...||+|+.+|.+.+.. .+..= .|-..-..+-|.+... ..+..+||++.-|......
T Consensus 47 ~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~-l~~~s----g~~~~~~~emf~~~d~--~~~~~~L~Pt~e~~~~~~~~ 119 (439)
T PRK12325 47 LKVLKKIENIVREEQNRAGAIEILMPTIQPAD-LWRES----GRYDAYGKEMLRIKDR--HDREMLYGPTNEEMITDIFR 119 (439)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccccHH-HHhhc----CCccccchhheEEecC--CCCEEEEcCCCcHHHHHHHH
Confidence 44578899999999999999999999997643 23211 2211111234666544 2455789986544433322
Q ss_pred ---hc-CCCCceEEEeeeEEEeC-CC---CCCCcceeEEEEEEEcCC-----CCHHHHHHHHHHHHHHhccC
Q psy9576 185 ---KI-NKPPIKVITSGRVYRID-SD---STHSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 185 ---~~-~~~pirifeiG~Vyr~d-~d---~th~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg~ 243 (338)
.+ +..|+|++++|.|||.+ .. -....+|+|-++...+.+ -.+..+..+...+++.+ |.
T Consensus 120 ~~~~syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~~~i~~~l-gl 190 (439)
T PRK12325 120 SYVKSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAYLRTFARL-GL 190 (439)
T ss_pred HHhhhchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 22 45799999999999998 43 235678999887777532 13566667777777776 75
|
|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0091 Score=62.74 Aligned_cols=127 Identities=17% Similarity=0.179 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc--
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI-- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~-- 186 (338)
...+.+-+++.....||++|.+|.+.+.. -+..-+ |-..-..+.|.+.+- .++..+|||+.-|......++
T Consensus 250 ~~~L~~~~~~~~~~~G~~~v~tP~l~~~~-l~~~sG----h~~~~~~~mf~~~~~--~~~~y~l~p~~~p~~~~~~~~~~ 322 (614)
T PLN02837 250 RHIIEDSWKKMHFEHGYDLLYTPHVAKAD-LWKTSG----HLDFYKENMYDQMDI--EDELYQLRPMNCPYHILVYKRKL 322 (614)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCccCCHH-HHhhcC----CcccchhhcccccCC--CCceEEECCCCcHHHHHHHhCcc
Confidence 45677778888888999999999997653 233222 111111122443221 234469999999986655433
Q ss_pred ---CCCCceEEEeeeEEEeCC-CC----CCCcceeEEEEEEEcC----CCCHHHHHHHHHHHHHHhccC
Q psy9576 187 ---NKPPIKVITSGRVYRIDS-DS----THSPMFHQIEGLWIDK----NISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ---~~~pirifeiG~Vyr~d~-d~----th~~~f~ql~~l~~g~----~~~f~dLKg~l~~ll~~lfg~ 243 (338)
+..|+|++++|+|||.+. .+ ....+|+|.++-+.-. .-.+..+......+++.| |.
T Consensus 323 ~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~l-g~ 390 (614)
T PLN02837 323 HSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQF-GF 390 (614)
T ss_pred CChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 346999999999999983 32 3567898888865421 123566667777777666 75
|
|
| >PRK00960 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.019 Score=58.86 Aligned_cols=147 Identities=20% Similarity=0.306 Sum_probs=83.6
Q ss_pred ceEeccchHHHHHHHhc-----CCCCceEEE-eeeEEEeCC----CCCCCcceeEEEEEEEcCC----CCHHHHHHHHHH
Q psy9576 170 PLLRTHTSPMQIRYSKI-----NKPPIKVIT-SGRVYRIDS----DSTHSPMFHQIEGLWIDKN----ISFSDLKGVYLN 235 (338)
Q Consensus 170 ~~LRt~lsp~~l~~l~~-----~~~pirife-iG~Vyr~d~----d~th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ 235 (338)
.+||+..=|...-..+. ...|+|+++ .|.|||.+. +-....+|+|.++.+.+.. --+..+....+.
T Consensus 310 yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h~f~tpEqs~ee~e~ll~~~e~ 389 (517)
T PRK00960 310 YVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIVWLGTPEQVEEIRDELLKYAHI 389 (517)
T ss_pred ccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 58898877777655442 346999999 889999994 2356778999999988642 123344455556
Q ss_pred HHHHhccCCCeeEEEccCCCCCCC---------------CceEEEEEee-cCCCCCCCeeEeeeeecCHHHhhhCCCCCC
Q psy9576 236 FIRVFFESDNIQIRFRPSYFPFTE---------------PSAEIDIVFQ-DGPLKGNWLEISGAGQVNPKVLCNMNLDPE 299 (338)
Q Consensus 236 ll~~lfg~~~~~~r~~ps~fpf~~---------------Ps~e~~i~~~-~g~~~~gwieig~~G~vhP~Vl~~~gi~~~ 299 (338)
+++.| |. .. +|- ....||.. ....+.++.. .+. .+.|.+|..|---.-.-.+.++|...
T Consensus 390 i~~~L-gL-p~-~r~-v~~DPFf~~~~k~~~~d~~f~~~~tydiE~wmP~~~~-~gk~~ev~S~S~hgd~farrfnIk~~ 464 (517)
T PRK00960 390 LAEKL-DL-EY-WRE-VGDDPFYLEGRGLEDRGIEFPDVPKYEMELWLPYRGD-ERKWVAVTSANVHGTHFVEGFNIKDY 464 (517)
T ss_pred HHHHc-CC-Cc-eEE-ecccccccccCccccccccCccccceeEEEEecCccC-CCCEEEEEeeeeccchhhHhhCcccC
Confidence 66666 75 20 121 11112111 1122333221 111 34588888765443333445666421
Q ss_pred ----CeEEEEEeechhHHHH---HHcCCCc
Q psy9576 300 ----KYIGFAFGSGLERLTM---LRYGIDD 322 (338)
Q Consensus 300 ----~~~~~afelglerlam---~~~~i~d 322 (338)
-|+ -++|++++|++- .-||.++
T Consensus 465 ~g~~~hT-nctG~g~eR~l~AlLe~hG~d~ 493 (517)
T PRK00960 465 KGRKLWT-GCTGYGLERWVIGFLAQKGFDP 493 (517)
T ss_pred CCCeEee-cceeeHHHHHHHHHHHhcCCCC
Confidence 244 688999999753 3455544
|
|
| >PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0056 Score=57.87 Aligned_cols=108 Identities=14% Similarity=0.019 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN 187 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~ 187 (338)
....+.+.++++|...||+++.+|.+|.-. .+. . ..+... ..+++...+. +....+||+-++|...|.++..
T Consensus 9 ~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d-~~~-~--~~~~~~---~~~~~~~~~~-~Gr~laLRpD~T~~iAR~~a~~ 80 (272)
T PRK12294 9 ALKESETAFLKYFNKADYELVDFSVIEKLD-WKQ-L--NHEDLQ---QMGERSFWQH-EHQIYALRNDFTDQLLRYYSMY 80 (272)
T ss_pred HHHHHHHHHHHHHHHcCCeEeeCCcchhHH-hhh-c--cccchh---hhheeeeecC-CCCEEEEcCCCCHHHHHHHHhc
Confidence 346789999999999999999999996532 231 1 111111 1223322221 3455899999999999987642
Q ss_pred -CCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEc--CCCCHHHH
Q psy9576 188 -KPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWID--KNISFSDL 229 (338)
Q Consensus 188 -~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g--~~~~f~dL 229 (338)
..+.|++..|+|||.+. +++|+..=++| ...+..++
T Consensus 81 ~~~~~Rl~Y~g~VfR~~~------~~~Q~GvEliG~~~~a~~e~l 119 (272)
T PRK12294 81 PTAATKVAYAGLIIRNNE------AAVQVGIENYAPSLANVQQSF 119 (272)
T ss_pred CCCCceEEEeccEeccCC------CcceeceEEECCCchhHHHHH
Confidence 34569999999999862 26888877778 33444444
|
|
| >KOG1936|consensus | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.016 Score=57.34 Aligned_cols=144 Identities=16% Similarity=0.127 Sum_probs=102.0
Q ss_pred ccCCCCCCCCCCCCCCCCh--HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCC
Q psy9576 90 NKIDITLPGRGKNKGGLHP--IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN 167 (338)
Q Consensus 90 ~~id~tlp~~~~~~G~~hp--~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~ 167 (338)
.++.+..|.+....+..+- .+.+.+.|+++|...|...+++|.++....-..+-+- +. +-+|=... .+.
T Consensus 56 ~k~~lKtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGE-------ds-kLiYdlkD-QGG 126 (518)
T KOG1936|consen 56 KKFSLKTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGE-------DS-KLIYDLKD-QGG 126 (518)
T ss_pred cceeecCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhccc-------cc-ceeEehhh-cCC
Confidence 3456666765544433222 3577889999999999999999999876443333321 11 22332222 156
Q ss_pred CcceEeccchHHHHHHHhcC-CCCceEEEeeeEEEeC-C--CCCCCcceeEEEEEEEcCC---CCHHHHHHHHHHHHHHh
Q psy9576 168 NKPLLRTHTSPMQIRYSKIN-KPPIKVITSGRVYRID-S--DSTHSPMFHQIEGLWIDKN---ISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 168 ~~~~LRt~lsp~~l~~l~~~-~~pirifeiG~Vyr~d-~--d~th~~~f~ql~~l~~g~~---~~f~dLKg~l~~ll~~l 240 (338)
+..-||.-|++...|.+..| -..++-+-+++|||+| . ..-...||.|.++=++|.- +-=+++-+++..++..+
T Consensus 127 El~SLRYDLTVPfARylAmNki~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l 206 (518)
T KOG1936|consen 127 ELCSLRYDLTVPFARYLAMNKITSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRL 206 (518)
T ss_pred cEEEeecccccHHHHHHHHcccccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhc
Confidence 77899999999999988654 4589999999999999 3 4667789999999888842 23367888888889888
Q ss_pred ccC
Q psy9576 241 FES 243 (338)
Q Consensus 241 fg~ 243 (338)
|+
T Consensus 207 -~I 208 (518)
T KOG1936|consen 207 -GI 208 (518)
T ss_pred -Cc
Confidence 86
|
|
| >TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.17 Score=51.66 Aligned_cols=195 Identities=13% Similarity=0.146 Sum_probs=103.7
Q ss_pred HHHHHHHHHHH-----hhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCc--------------------
Q psy9576 110 MRTLERIEKIF-----YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRY-------------------- 164 (338)
Q Consensus 110 ~~~~~~Ir~~~-----~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~-------------------- 164 (338)
..+.+.+.+++ ...||+++..|.+.+... +.+.. |-..-..+.+++..+.
T Consensus 223 a~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~-l~k~g----hl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eip 297 (520)
T TIGR00415 223 TALFRALEEFFIEEIVKKIGFQECLFPKLIPLDI-MNKMR----YLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIP 297 (520)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHH-HcccC----CCCCCchhheEEecCCCCcchhhccccccccccccc
Confidence 34455555444 346999999999977643 33322 1111112334442110
Q ss_pred -------cCCCcceEeccchHHHHHHHh-----cCCCCceEEE-eeeEEEeCC----CCCCCcceeEEEEEEEcCC----
Q psy9576 165 -------VSNNKPLLRTHTSPMQIRYSK-----INKPPIKVIT-SGRVYRIDS----DSTHSPMFHQIEGLWIDKN---- 223 (338)
Q Consensus 165 -------~~~~~~~LRt~lsp~~l~~l~-----~~~~pirife-iG~Vyr~d~----d~th~~~f~ql~~l~~g~~---- 223 (338)
..++..+||++.=..+....+ ....|++++. .|.|||.+. +-....+|++.|++..+..
T Consensus 298 i~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~~~tpEea~ 377 (520)
T TIGR00415 298 IDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVWIAEPEETE 377 (520)
T ss_pred cccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEEEeCHHHHH
Confidence 012245788774444433332 2346999999 779999984 2345668999999998642
Q ss_pred CCHHHHHHHHHHHHHHhccCCCeeEEEccCCCCCCCC------------ce---EEEEEee-cCCCCCCCeeEeeeeecC
Q psy9576 224 ISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEP------------SA---EIDIVFQ-DGPLKGNWLEISGAGQVN 287 (338)
Q Consensus 224 ~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fpf~~P------------s~---e~~i~~~-~g~~~~gwieig~~G~vh 287 (338)
--+..+....+.+++.| |+ .++......||... ++ +..+... ......| .-..+|-.|
T Consensus 378 e~~e~mle~~~~~l~~L-~L---pyrv~~adDPFf~~g~k~~~~dl~F~~a~KyDlevwiP~~~~~~~g--~AlqS~n~H 451 (520)
T TIGR00415 378 EIRDKTLELAEDAADEL-DL---EWWTEVGDDPFYLEGRKKEDRGIEFPDVPKYEMRLSLPGIEDERKG--VAVTSANVH 451 (520)
T ss_pred HHHHHHHHHHHHHHHHc-CC---CeEEeecCCcccccccCcccccccCcccceEEEEEEEccccCCCCC--cEEEEeech
Confidence 22455666777777776 74 44544444453221 11 2322221 0000122 223456677
Q ss_pred HHHh-hhCCCCCCC---eEEEEEeechhHHHH
Q psy9576 288 PKVL-CNMNLDPEK---YIGFAFGSGLERLTM 315 (338)
Q Consensus 288 P~Vl-~~~gi~~~~---~~~~afelglerlam 315 (338)
=+-. +.|+|...+ .-..++|+|++|++-
T Consensus 452 g~hF~k~F~I~~~~~~~a~ttC~G~gleR~i~ 483 (520)
T TIGR00415 452 GTHFIEGFRIKDAKGLNIWTGCTGIGISRWIV 483 (520)
T ss_pred hcccccccCcccCCCCeEEEeeeeccHHHHHH
Confidence 3222 235664221 224588999999764
|
The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases. |
| >PRK04173 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.019 Score=58.26 Aligned_cols=85 Identities=20% Similarity=0.253 Sum_probs=54.1
Q ss_pred CCcceEeccchHHHHHHHh----c-C-CCCceEEEeeeEEEeC-CCC---CCCcceeEEEEEE-EcCCC---CHHHHHHH
Q psy9576 167 NNKPLLRTHTSPMQIRYSK----I-N-KPPIKVITSGRVYRID-SDS---THSPMFHQIEGLW-IDKNI---SFSDLKGV 232 (338)
Q Consensus 167 ~~~~~LRt~lsp~~l~~l~----~-~-~~pirifeiG~Vyr~d-~d~---th~~~f~ql~~l~-~g~~~---~f~dLKg~ 232 (338)
....+||+-|..++.-..+ . + ..|+++.++|+|||++ +.. ....+|+|.++-+ +..+- -+......
T Consensus 157 ~~~~~lRpetaqg~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~ 236 (456)
T PRK04173 157 KSLGYLRPETAQGIFVNFKNVLRTARKKLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEFFVKPGTDNEWFAYWIEL 236 (456)
T ss_pred CcceeeccccchhHHHHHHHHHHhccccCCeeeeEEchhHhCccCCCCCceeeceeeeeEEEEEECcChHHHHHHHHHHH
Confidence 3456899988877754442 2 3 5799999999999999 432 3447899988843 33322 24455556
Q ss_pred HHHHHHHhccCCCeeEEEcc
Q psy9576 233 YLNFIRVFFESDNIQIRFRP 252 (338)
Q Consensus 233 l~~ll~~lfg~~~~~~r~~p 252 (338)
+..++..+ |.+...+++++
T Consensus 237 ~~~~l~~l-G~~~~~~~~s~ 255 (456)
T PRK04173 237 RKNWLLDL-GIDPENLRFRE 255 (456)
T ss_pred HHHHHHHc-CCCccceEEEe
Confidence 66667665 86222345543
|
|
| >KOG0554|consensus | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0059 Score=59.69 Aligned_cols=94 Identities=21% Similarity=0.158 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEecc--chHHH--HHHHhc
Q psy9576 111 RTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTH--TSPMQ--IRYSKI 186 (338)
Q Consensus 111 ~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~--lsp~~--l~~l~~ 186 (338)
.+.....++|...+|..+.+|.+++.+ |-.+ .+.|.+......+...-=|+. |..+| +++|..
T Consensus 137 ~~~~a~h~ffq~~~F~~i~tPiiTt~D-CEGa------------GE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~~a~ 203 (446)
T KOG0554|consen 137 ALAFATHSFFQSHDFTYINTPIITTND-CEGA------------GEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEAMAC 203 (446)
T ss_pred HHHHHHHHHHHHcCceEecCcEeeccC-CCCC------------cceEEEEecCcccccccCCceEEEEeceehHHHHHh
Confidence 345567889999999999999998762 2111 112322211000000111111 22333 455543
Q ss_pred CCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEE
Q psy9576 187 NKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLW 219 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~ 219 (338)
.- -|++-.|..||.| + .+.|+.+|+++|.=+
T Consensus 204 ~L--srvyTfgP~FRAEnS~tsRHLAEFwMlEaE~ 236 (446)
T KOG0554|consen 204 AL--SRVYTFGPTFRAENSHTSRHLAEFWMLEAEL 236 (446)
T ss_pred hh--cceEeeccceecccCCchhHHhhhhhhhhHH
Confidence 32 2778899999999 4 589999999988644
|
|
| >PRK03991 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.049 Score=57.24 Aligned_cols=107 Identities=12% Similarity=0.081 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc-
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI- 186 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~- 186 (338)
-...+.+-+++.+...||++|.+|.+-... .+.. ..|-..-..+.|.+... .+..+||+..-|++.-....
T Consensus 229 i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~-~~~~----sgh~~~f~e~my~v~~~---~e~l~Lrp~~c~~~~~~~~~~ 300 (613)
T PRK03991 229 IRDLLEDYVYNLVVELGAMPVETPIMYDLS-HPAI----REHADKFGERQYRVKSD---KKDLMLRFAACFGQFLMLKDM 300 (613)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeecChh-HHhh----cccccccchhceEecCC---CceEEEecCCCHHHHHHHhCC
Confidence 356778889999999999999999874321 1111 11222111133555332 34579999988888755533
Q ss_pred ----CCCCceEEEeee-EEEeC-CC----CCCCcceeEEEEEEEcC
Q psy9576 187 ----NKPPIKVITSGR-VYRID-SD----STHSPMFHQIEGLWIDK 222 (338)
Q Consensus 187 ----~~~pirifeiG~-Vyr~d-~d----~th~~~f~ql~~l~~g~ 222 (338)
+..|+|++++|+ |||++ .. -....+|+|.++-....
T Consensus 301 ~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~ 346 (613)
T PRK03991 301 TISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCK 346 (613)
T ss_pred cCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEEC
Confidence 357999999999 99998 32 34667899999876643
|
|
| >COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.76 Score=47.11 Aligned_cols=175 Identities=13% Similarity=0.096 Sum_probs=107.2
Q ss_pred CChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccc----hHHHH
Q psy9576 106 LHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHT----SPMQI 181 (338)
Q Consensus 106 ~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~l----sp~~l 181 (338)
.--+.++.+.||+.|-+.|-+|+.-|.+.+....-+ .+|-..-..+-+++.+. .++..+||++- ++..-
T Consensus 47 ~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkE-----s~r~~~f~~El~~v~dr--g~~~l~L~PTsEe~it~~~~ 119 (500)
T COG0442 47 LRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKE-----SGRWEGFGPELFRVKDR--GDRPLALRPTSEEVITDMFR 119 (500)
T ss_pred HHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHH-----hChhhhcchhhEEEEcc--CCceeeeCCCcHHHHHHHHH
Confidence 345678899999999999999999999877432222 12211111244677665 35667999873 33322
Q ss_pred HHHhc-CCCCceEEEeeeEEEeCCC----CCCCcceeEEEEEEEcCCCCHHHHHHHHH-------HHHHHhccCCCeeEE
Q psy9576 182 RYSKI-NKPPIKVITSGRVYRIDSD----STHSPMFHQIEGLWIDKNISFSDLKGVYL-------NFIRVFFESDNIQIR 249 (338)
Q Consensus 182 ~~l~~-~~~pirifeiG~Vyr~d~d----~th~~~f~ql~~l~~g~~~~f~dLKg~l~-------~ll~~lfg~~~~~~r 249 (338)
..+.+ +..|++++-+..|||-+.- --...||.+=++.-.+ .|..++....+ .++..+ | ..++
T Consensus 120 ~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh--~~~e~a~~~y~~~~~~Y~~if~~i-~---l~~~ 193 (500)
T COG0442 120 KWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFH--ADEEDAEETYEKMLDAYSRIFLRL-P---LIFG 193 (500)
T ss_pred HHhhhhhhCCcceeeeeeEEeccccCCCCccchheeeeccccccc--CCHHHHHHHHHHHHHHHHHHHHhC-C---ceEE
Confidence 33333 5689999999999998732 1223455554544443 34445444444 444444 4 2333
Q ss_pred Ecc--CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhC-CCC
Q psy9576 250 FRP--SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNM-NLD 297 (338)
Q Consensus 250 ~~p--s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~-gi~ 297 (338)
-++ +-|+...-|.|+++.+. .+|-..|+.|....-++-+++ +++
T Consensus 194 ~~~ad~g~~Gg~~S~eF~~l~p----d~ge~qi~ts~~y~aN~e~a~~~~~ 240 (500)
T COG0442 194 PVPADEGFIGGSYSHEFEALMP----DGGEDQIATSHHYGANFEKAFIDIK 240 (500)
T ss_pred eecccCCCCCCccceEEEEEcc----CCCccEEEEecchHHhHHHhccCCC
Confidence 343 46777777788888762 234457887777667777777 553
|
|
| >COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.082 Score=52.37 Aligned_cols=109 Identities=14% Similarity=0.225 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.-...+.+.+++.|...||.-|++|.++.- +-|..++ .|-.+ .-+|.+.+.. .+..+||+-.++...|....
T Consensus 18 ~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~-d~~l~~~---g~~l~--~~~f~l~d~~--g~~l~LRpD~T~pVaR~~~~ 89 (390)
T COG3705 18 RRKEEIRDQLLALFRAWGYERVETPTLEPA-DPLLDGA---GEDLR--RRLFKLEDET--GGRLGLRPDFTIPVARIHAT 89 (390)
T ss_pred hhHHHHHHHHHHHHHHhCCccccccccchh-hhhhhcc---chhhh--hhheEEecCC--CCeEEecccccHHHHHHHHH
Confidence 345678899999999999999999999753 2333221 12222 2457777663 34489999988888876643
Q ss_pred --CCCCceEEEeeeEEEeCCCCCCCc-ceeEEEEEEEcCC
Q psy9576 187 --NKPPIKVITSGRVYRIDSDSTHSP-MFHQIEGLWIDKN 223 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d~d~th~~-~f~ql~~l~~g~~ 223 (338)
...|.|+...|+|||........+ ||.|+..=..|.+
T Consensus 90 ~~~~~P~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~~ 129 (390)
T COG3705 90 LLAGTPLRLSYAGKVFRAREGRHGRRAEFLQAGIELLGDD 129 (390)
T ss_pred hcCCCCceeeecchhhhcchhccCcccchhhhhhHHhCCC
Confidence 246999999999999873222334 7888876555543
|
|
| >KOG2411|consensus | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.24 Score=50.02 Aligned_cols=131 Identities=18% Similarity=0.299 Sum_probs=80.4
Q ss_pred hhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-CCCeEeeCCccccchhhhhhcCCCCC-----CCCCcCcccee
Q psy9576 86 SLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYS-IGFDITDGPEIETDFNNFTALNSPKN-----HPARSMHDTFY 159 (338)
Q Consensus 86 ~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~-~GF~Ev~~~~l~~~~~nf~~L~~p~~-----hpar~~~dt~~ 159 (338)
+++...+|..-|.... ..--...+...||++|.. .||.|+.+|.+= . ..|.. -|+|.....||
T Consensus 161 rl~~RyldLR~~kmq~---nLrlRS~~v~~iR~yl~n~~GFvevETPtLF------k--rTPgGA~EFvVPtr~~~g~FY 229 (628)
T KOG2411|consen 161 RLRFRYLDLRRPKMQN---NLRLRSNVVKKIRRYLNNRHGFVEVETPTLF------K--RTPGGAREFVVPTRTPRGKFY 229 (628)
T ss_pred cchhhhhhhccHHHHH---HHHHHHHHHHHHHHHHhhhcCeeeccCcchh------c--cCCCccceeecccCCCCCcee
Confidence 3444555555554221 122235678899999995 589999999872 2 12322 23333222233
Q ss_pred ecCCccCCCcceEeccchHHHHHHHhcCCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHH
Q psy9576 160 IKNRYVSNNKPLLRTHTSPMQIRYSKINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIR 238 (338)
Q Consensus 160 i~np~~~~~~~~LRt~lsp~~l~~l~~~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~ 238 (338)
.| --||.|.+.|.--..=-|+|-+.||||.+. -+..-|||.|++.=+.- ++..++..+++.+++
T Consensus 230 -----------aL--pQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~DRQPEFTQvD~EMsF--~~~~dim~liEdll~ 294 (628)
T KOG2411|consen 230 -----------AL--PQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRADRQPEFTQVDMEMSF--TDQEDIMKLIEDLLR 294 (628)
T ss_pred -----------ec--CCCHHHHHHHHHHhchhhHHhHHhhhcccccCcccCCcceeeeeEEec--cCHHHHHHHHHHHHH
Confidence 12 235888876532111238899999999883 45578999999875543 345788888999887
Q ss_pred Hhcc
Q psy9576 239 VFFE 242 (338)
Q Consensus 239 ~lfg 242 (338)
+.+.
T Consensus 295 ~~ws 298 (628)
T KOG2411|consen 295 YVWS 298 (628)
T ss_pred Hhch
Confidence 7643
|
|
| >COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.67 Score=46.52 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHH----hhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH--
Q psy9576 109 IMRTLERIEKIF----YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR-- 182 (338)
Q Consensus 109 ~~~~~~~Ir~~~----~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~-- 182 (338)
...+.+.+.++| ...||+++..|.+.....-+..=.+|. . ..|.|++.++ ++.+.=|+-.|..--
T Consensus 173 ~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpk-f----~e~~y~v~~~----~~~LipTaEvpl~~l~~ 243 (429)
T COG0172 173 GARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPK-F----EEDLYKVEDP----DLYLIPTAEVPLTNLHR 243 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCC-C----cccceEecCC----CEEEEecchhhhHHhhc
Confidence 345555555554 478999999999987655444444443 1 2366888776 446666665553311
Q ss_pred --HHhcCCCCceEEEeeeEEEeCC-----CC---CCCcceeEEEEEEEcC-C---CCHHHHHHHHHHHHHHhccC
Q psy9576 183 --YSKINKPPIKVITSGRVYRIDS-----DS---THSPMFHQIEGLWIDK-N---ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 183 --~l~~~~~pirifeiG~Vyr~d~-----d~---th~~~f~ql~~l~~g~-~---~~f~dLKg~l~~ll~~lfg~ 243 (338)
.+.....|++++....|||++. |. -..++|+.++.++.-+ . ..+..+.+.-+.+++.| ++
T Consensus 244 ~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~L-eL 317 (429)
T COG0172 244 DEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQEL-EL 317 (429)
T ss_pred ccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHh-CC
Confidence 1222457999999999999984 22 3456899999888743 2 34677888889999998 74
|
|
| >PRK07080 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.39 E-value=3.4 Score=39.81 Aligned_cols=149 Identities=11% Similarity=0.087 Sum_probs=83.8
Q ss_pred CCCChHHHHHHHHHHHHhhCC----CeEeeCCccccchhhhhhc----CCCC----CCCCC--cCcc-----cee----e
Q psy9576 104 GGLHPIMRTLERIEKIFYSIG----FDITDGPEIETDFNNFTAL----NSPK----NHPAR--SMHD-----TFY----I 160 (338)
Q Consensus 104 G~~hp~~~~~~~Ir~~~~~~G----F~Ev~~~~l~~~~~nf~~L----~~p~----~hpar--~~~d-----t~~----i 160 (338)
|+.--...+.+.+-.++..+| +.++..|.+-+. ..|++. ++|. .|+-. +..+ -+. +
T Consensus 41 grs~~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~-~~~ek~~Y~ksFP~l~~~V~~~~g~~~e~~~ll~~~~~~~~~ 119 (317)
T PRK07080 41 GRSGLFEDVVEALDALITRLGADQGAEVLRFPPVMSR-AEFERSGYLKSFPQLAGTVHSFCGNEAEHRRLLACLDRGEDW 119 (317)
T ss_pred cccHHHHHHHHHHHHHHHHhccccCCceeeCCCCCCH-HHHHhcChhhhCcccceeecCCCCCCHHHHHHHHHHHhcCch
Confidence 444455778888888888888 999988887554 456654 2332 12110 0000 000 0
Q ss_pred cCCccCCCcceEeccchHHHHHHHhcC----CCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHH----HH
Q psy9576 161 KNRYVSNNKPLLRTHTSPMQIRYSKIN----KPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSD----LK 230 (338)
Q Consensus 161 ~np~~~~~~~~LRt~lsp~~l~~l~~~----~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~d----LK 230 (338)
... +.....+|.+..=....-.++.. .....+=-.|.|||.+ + |.+...+|+|-|.+++|..-...+ .+
T Consensus 120 ~~~-l~~~~~vL~pAaCyP~Yp~l~~~g~lp~~g~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iGt~e~v~~~r~~w~ 198 (317)
T PRK07080 120 TES-QKPTDVVLTPAACYPVYPVLARRGALPADGRLVDVASYCFRHEPSLDPARMQLFRMREYVRIGTPEQIVAFRQSWI 198 (317)
T ss_pred hhh-cCCCcceecccccccchhhhccCcccCCCCcEEEeeeeeeccCCCCCcHHHhheeeeEEEEecCHHHHHHHHHHHH
Confidence 000 01112455555332333344432 1233444579999999 3 778888999999999995322222 35
Q ss_pred HHHHHHHHHhccCCCeeEEEccCCCCCC
Q psy9576 231 GVYLNFIRVFFESDNIQIRFRPSYFPFT 258 (338)
Q Consensus 231 g~l~~ll~~lfg~~~~~~r~~ps~fpf~ 258 (338)
.....+++.| |. .++......||.
T Consensus 199 e~~~~l~~~L-gL---~~~ve~AnDPFF 222 (317)
T PRK07080 199 ERGTAMADAL-GL---PVEIDLANDPFF 222 (317)
T ss_pred HHHHHHHHHh-CC---ceeEeecCCccc
Confidence 5566667776 74 456666677744
|
|
| >PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.13 Score=49.90 Aligned_cols=25 Identities=44% Similarity=0.634 Sum_probs=21.8
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|...||||+|||+|+..|+++||+-
T Consensus 303 p~~G~glG~eRLvm~l~g~~~Irdv 327 (335)
T PF00152_consen 303 PHGGFGLGLERLVMLLLGLKNIRDV 327 (335)
T ss_dssp SEEEEEEEHHHHHHHHHT-SSGGGG
T ss_pred ccCcceehHHHHHHHHcCCCcHHhe
Confidence 5678999999999999999999974
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B .... |
| >PLN02903 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.15 Score=53.77 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=20.6
Q ss_pred EEEeechhHHHHHHcCCCcccccc
Q psy9576 304 FAFGSGLERLTMLRYGIDDLRLFY 327 (338)
Q Consensus 304 ~afelglerlam~~~~i~diR~~~ 327 (338)
-.+.+|+|||+|+..|.+.||+..
T Consensus 593 gG~alGldRlvmll~~~~~Irdvi 616 (652)
T PLN02903 593 GGIAYGLDRLVMLLAGAKSIRDVI 616 (652)
T ss_pred CceeecHHHHHHHHcCCCchHheE
Confidence 456788999999999999999853
|
|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.56 Score=48.98 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=61.1
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.-.+.+.+-++......||++|.+|.+.+... +. ...|-..-..+.|.+... .+-.+||+-.-|+.+...++
T Consensus 221 ~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l-~~----~SGH~~~y~e~mf~~~~~---~~~~~lKpmNCpgh~~ifk~ 292 (589)
T COG0441 221 TIRNLLEDYVRTKLRSYGYQEVKTPVLADLEL-WE----LSGHWDNYKEDMFLTESD---DREYALKPMNCPGHILIFKS 292 (589)
T ss_pred cHHHHHHHHHHHHHHhcCceEecCCeeeeccc-ch----hccchhhccccceeeccC---ChhheeeeccCHhHHHHHhc
Confidence 34567888999999999999999998855321 11 112222111122433322 23359999999999988864
Q ss_pred -----CCCCceEEEeeeEEEeC
Q psy9576 187 -----NKPPIKVITSGRVYRID 203 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d 203 (338)
...|+|++|.|.|||.+
T Consensus 293 ~~~SYR~LP~r~~E~g~v~R~E 314 (589)
T COG0441 293 GLRSYRELPLRLAEFGYVYRYE 314 (589)
T ss_pred CCcceeccchhhhhcceeeccc
Confidence 35799999999999998
|
|
| >KOG1035|consensus | Back alignment and domain information |
|---|
Probab=90.62 E-value=5.7 Score=44.71 Aligned_cols=196 Identities=15% Similarity=0.071 Sum_probs=105.1
Q ss_pred CCcchHHHHHHHhcCCChhHhhhhchhhH---------HHHHHHHHHHHHHHHHHHHhhHH---HhhccccCCCCCCCCC
Q psy9576 33 GKNGKLTQYIKNIKNISINERKRYGEIIN---------SIKINIKKELNIHRDILKKKQLK---VSLKTNKIDITLPGRG 100 (338)
Q Consensus 33 Gkkg~l~~l~~~l~~l~~eer~~~G~~~n---------~~k~~~~~~~~~~~~~l~~~~~~---~~~~~~~id~tlp~~~ 100 (338)
++-+.=+.++..|=+=+|.+||..-+++| ++....+..+.+..........+ ++...+.++.+.-...
T Consensus 842 ~~~~~e~slI~~Ll~hdP~kRPtA~eLL~s~llppe~~el~~~~~h~~~~~~~k~~~~~~~~~~~q~~~~~~n~~yd~~~ 921 (1351)
T KOG1035|consen 842 PEHPEEASLIRWLLSHDPSKRPTATELLNSELLPPEESELLVFLQHLYIEQLGKAYKNLLQLIFEQEVLEVLNHQYDLDR 921 (1351)
T ss_pred ccchHHHHHHHHHhcCCCccCCCHHHHhhccCCCccchHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhhhhcccccccc
Confidence 33445556677776778888888777665 33333333333322222111111 1111112222222222
Q ss_pred CCCCCCCh-----HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEecc
Q psy9576 101 KNKGGLHP-----IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTH 175 (338)
Q Consensus 101 ~~~G~~hp-----~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~ 175 (338)
...+...+ ...+.+++..+|..-|+.+..+|.+... ..++...+.++.+... +..-..|=--
T Consensus 922 ~~~~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~-----------~~~~~~~~~~v~~ld~--sG~~v~Lp~D 988 (1351)
T KOG1035|consen 922 LSYIQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLR-----------NACAYFSRKAVELLDH--SGDVVELPYD 988 (1351)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHhcceeccCCccccc-----------cccchhccceeeeecC--CCCEEEeecc
Confidence 12222222 3466788899999999999998865332 1122222233444322 1111222222
Q ss_pred chHHHHHHHhcCC-CCceEEEeeeEEEeCCCCCCCcceeEEEEEEEcCCCCHHH--HHHHHHHHHHHhcc
Q psy9576 176 TSPMQIRYSKINK-PPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSD--LKGVYLNFIRVFFE 242 (338)
Q Consensus 176 lsp~~l~~l~~~~-~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g~~~~f~d--LKg~l~~ll~~lfg 242 (338)
|---..|.+.++. .-+|=|++++|||+..+. |+.++.+.++=++|...++.+ +..++..++...|.
T Consensus 989 Lr~pfar~vs~N~~~~~Kry~i~rVyr~~~~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~ 1057 (1351)
T KOG1035|consen 989 LRLPFARYVSRNSVLSFKRYCISRVYRPAIHN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEILH 1057 (1351)
T ss_pred ccchHHHHhhhchHHHHHHhhhheeecccccC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHHhc
Confidence 2223567776653 467889999999998643 999999999999988766544 44455555544433
|
|
| >PRK14894 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=1.7 Score=44.59 Aligned_cols=113 Identities=15% Similarity=0.147 Sum_probs=66.7
Q ss_pred cceEeccchHHHHH----HHh--cCCCCceEEEeeeEEEeCCC----CCCCcceeEEEEEE-EcCCC---CHHHHHHHHH
Q psy9576 169 KPLLRTHTSPMQIR----YSK--INKPPIKVITSGRVYRIDSD----STHSPMFHQIEGLW-IDKNI---SFSDLKGVYL 234 (338)
Q Consensus 169 ~~~LRt~lsp~~l~----~l~--~~~~pirifeiG~Vyr~d~d----~th~~~f~ql~~l~-~g~~~---~f~dLKg~l~ 234 (338)
.-+||+-|--++.- ++. ++..|.-+-.+|++||++.. --.+.||.|++.=+ ++.+- .+..-.+...
T Consensus 138 ~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr~~l~R~REF~q~EiE~Fv~P~~~~~~~~y~~~~~~ 217 (539)
T PRK14894 138 FAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEINPRNFLFRVREFEQMEIEYFVMPGTDEEWHQRWLEARL 217 (539)
T ss_pred ceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccCCCCceeecccchhheEEEEeCCCchHHHHHHHHHHHH
Confidence 36899998877642 232 34679999999999999942 23567888777643 33322 2333444455
Q ss_pred HHHHHhccCCCeeEEEccCCCC-CCC-CceEEEEEeecCCCCCCCeeEeeee
Q psy9576 235 NFIRVFFESDNIQIRFRPSYFP-FTE-PSAEIDIVFQDGPLKGNWLEISGAG 284 (338)
Q Consensus 235 ~ll~~lfg~~~~~~r~~ps~fp-f~~-Ps~e~~i~~~~g~~~~gwieig~~G 284 (338)
.++..+ |.+...+||+...-. -.| .....|+.+. =. ..||+|+-|+-
T Consensus 218 ~fl~~i-Gi~~~~lrfr~h~~~ElAHYa~~~~D~e~~-~p-~~Gw~E~~Gia 266 (539)
T PRK14894 218 AWWEQI-GIPRSRITIYDVPPDELAHYSKRTFDLMYD-YP-NIGVQEIEGIA 266 (539)
T ss_pred HHHHHh-CCCHHHeeeeecCcHHhhhhhhccEEEEEE-CC-CCCeEEEEEee
Confidence 666777 873345777653111 111 2234455440 01 24899988764
|
|
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.22 Score=47.81 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=22.1
Q ss_pred EEEEEeechhHHHHHHcCCCcccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRL 325 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~ 325 (338)
|...||||+|||+|+..|+++||+
T Consensus 282 p~~G~giGidRL~m~~~g~~~Ird 305 (306)
T PRK09350 282 DCSGVALGVDRLIMLALGAESISE 305 (306)
T ss_pred CCCceEecHHHHHHHHcCCCCccc
Confidence 567899999999999999999996
|
|
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=89.15 E-value=0.21 Score=50.66 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=23.1
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|...||||+|||+|+..|.++||+.
T Consensus 414 P~gG~GiGidRL~m~l~g~~nIrdv 438 (450)
T PRK03932 414 PHSGFGLGFERLVAYITGLDNIRDV 438 (450)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhh
Confidence 6778999999999999999999974
|
|
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=87.95 E-value=0.29 Score=49.71 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=23.0
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|.-.||||+|||+|+..|+++||+.
T Consensus 417 PhgG~GiGieRlvm~l~g~~~Irdv 441 (453)
T TIGR00457 417 PHSGFGLGFERLLAYITGLENIRDA 441 (453)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhh
Confidence 6789999999999999999999963
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn. |
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=87.94 E-value=0.33 Score=49.95 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.9
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|.-.||||+|||+|+..|.++||+.
T Consensus 471 P~gG~GiGiDRLvMlltg~~sIrdv 495 (505)
T PRK12445 471 PTAGLGIGIDRMIMLFTNSHTIRDV 495 (505)
T ss_pred CCCeEEEhHHHHHHHHcCCCchheE
Confidence 5678999999999999999999974
|
|
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=87.58 E-value=0.34 Score=50.37 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=25.5
Q ss_pred hCCCCCCCeEEEEEeechhHHHHHHcCCCccccc
Q psy9576 293 NMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 293 ~~gi~~~~~~~~afelglerlam~~~~i~diR~~ 326 (338)
.+|++ |.-.||||+|||+|+..|.+.||+.
T Consensus 514 eyGmP----P~gG~GiGiDRLvMlltg~~sIrdV 543 (553)
T PLN02502 514 EYGLP----PTGGWGLGIDRLVMLLTDSASIRDV 543 (553)
T ss_pred HcCCC----CCceEEehHHHHHHHHcCCcchhee
Confidence 35664 5678999999999999999999964
|
|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=87.53 E-value=0.35 Score=49.64 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.8
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|.-.||||+|||+|+..|.+.||+.
T Consensus 462 P~gG~GiGiDRLvMlltg~~~Irdv 486 (496)
T TIGR00499 462 PTGGLGIGIDRLVMLLTDSKSIRDV 486 (496)
T ss_pred CCceEEEhHHHHHHHHhCCCcHhee
Confidence 5678999999999999999999964
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. |
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=87.49 E-value=0.34 Score=49.67 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.8
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|.-.||||+|||+|+..|.++||+.
T Consensus 457 P~gG~GiGiDRLvm~ltg~~~Irdv 481 (491)
T PRK00484 457 PTGGLGIGIDRLVMLLTDSPSIRDV 481 (491)
T ss_pred CCCeEEEeHHHHHHHHhCCCcHHhc
Confidence 5678999999999999999999974
|
|
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=87.36 E-value=0.38 Score=50.11 Aligned_cols=25 Identities=36% Similarity=0.670 Sum_probs=23.0
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|...||||+|||+|+..|+++||+.
T Consensus 536 Ph~G~GlGiERLvm~l~g~~nIRdv 560 (572)
T PLN02221 536 KHCGFGLGFERMILFATGIDNIRDV 560 (572)
T ss_pred CCceEEEeHHHHHHHHcCCCchheE
Confidence 5778999999999999999999974
|
|
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=87.13 E-value=0.57 Score=49.09 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=21.8
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|-..+++|+|||+|+..|.+.||+.
T Consensus 528 ph~g~~~G~dr~~~~~~~~~~irdv 552 (588)
T PRK00476 528 PHGGIAFGLDRLVMLLAGADSIRDV 552 (588)
T ss_pred CCcceeccHHHHHHHHcCCccHHhe
Confidence 3457789999999999999999985
|
|
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=86.13 E-value=0.45 Score=49.73 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.8
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|...+|||+|||+|+..|.+.||+.
T Consensus 551 PtgG~GiGIDRLvMlltg~~sIrdV 575 (585)
T PTZ00417 551 PTGGLGLGIDRITMFLTNKNCIKDV 575 (585)
T ss_pred CCceEEEcHHHHHHHHcCCcchhee
Confidence 5778999999999999999999964
|
|
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.20 E-value=1.2 Score=45.85 Aligned_cols=25 Identities=40% Similarity=0.515 Sum_probs=20.5
Q ss_pred eEEEEEeechhHHHHHHcCCCcccccc
Q psy9576 301 YIGFAFGSGLERLTMLRYGIDDLRLFY 327 (338)
Q Consensus 301 ~~~~afelglerlam~~~~i~diR~~~ 327 (338)
..|.| +|||||+||..|-+.||+..
T Consensus 527 HgGiA--~GlDRlvmll~g~~sIReVI 551 (585)
T COG0173 527 HGGIA--FGLDRLVMLLTGAESIRDVI 551 (585)
T ss_pred Cccee--ccHHHHHHHHcCCCchhhee
Confidence 45666 56999999999999999853
|
|
| >PLN02734 glycyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=85.06 E-value=2.4 Score=45.06 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=35.5
Q ss_pred CcceEeccchHHHH----HHHh--cCCCCceEEEeeeEEEeCCC----CCCCcceeEEEE
Q psy9576 168 NKPLLRTHTSPMQI----RYSK--INKPPIKVITSGRVYRIDSD----STHSPMFHQIEG 217 (338)
Q Consensus 168 ~~~~LRt~lsp~~l----~~l~--~~~~pirifeiG~Vyr~d~d----~th~~~f~ql~~ 217 (338)
..-+||+=|--|+- +.+. ++..|.-+..||++||++.. --.+.||.|++.
T Consensus 247 ~~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEi 306 (684)
T PLN02734 247 SVGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEI 306 (684)
T ss_pred ccceecccccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccCcccceeeechhhhhhh
Confidence 34689998876662 3332 34679999999999999932 345678877664
|
|
| >TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type | Back alignment and domain information |
|---|
Probab=84.46 E-value=1.9 Score=44.86 Aligned_cols=51 Identities=25% Similarity=0.260 Sum_probs=36.2
Q ss_pred CCcceEeccchHHHH----HHHh--cCCCCceEEEeeeEEEeCCC----CCCCcceeEEEE
Q psy9576 167 NNKPLLRTHTSPMQI----RYSK--INKPPIKVITSGRVYRIDSD----STHSPMFHQIEG 217 (338)
Q Consensus 167 ~~~~~LRt~lsp~~l----~~l~--~~~~pirifeiG~Vyr~d~d----~th~~~f~ql~~ 217 (338)
...-+||+=|--|+- +.+. ++..|.-+..+|++||++.. --.+.||.|+|.
T Consensus 154 ~~~~yLRPETAQGiFvnFk~l~~~~~~klPfgiaQiGk~fRNEIsPr~~l~R~REF~q~Ei 214 (551)
T TIGR00389 154 KRKGYLRPETAQGIFINFKRLLQFFRRKLPFGVAQIGKSFRNEISPRNGLFRVREFEQAEI 214 (551)
T ss_pred CcccccccccchhhHHhHHHHHHhcCCCCCeeehhhhHhhhcccCcccceEEeehhhhchh
Confidence 344689998887663 2222 34679999999999999942 235678887765
|
This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases. |
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=83.61 E-value=0.61 Score=49.30 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.8
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|.-.+|||+|||+|+..|.+.||+.
T Consensus 532 PtgG~GIGIDRLvMlltg~~sIReV 556 (659)
T PTZ00385 532 PTAGWGMGIDRALMLLTNSSNIRDG 556 (659)
T ss_pred CCCceEEcHHHHHHHHcCCcchhhe
Confidence 5678999999999999999999974
|
|
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=82.72 E-value=1.1 Score=47.77 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=20.4
Q ss_pred EEEeechhHHHHHHcCCCcccccc
Q psy9576 304 FAFGSGLERLTMLRYGIDDLRLFY 327 (338)
Q Consensus 304 ~afelglerlam~~~~i~diR~~~ 327 (338)
-.+.+|+|||+|+..|.+.||+..
T Consensus 546 gG~a~G~dRlvm~l~~~~sirdvi 569 (706)
T PRK12820 546 GGIALGLDRVVSMILQTPSIREVI 569 (706)
T ss_pred CceeccHHHHHHHHcCCccHHHhc
Confidence 456678999999999999999853
|
|
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=80.95 E-value=0.85 Score=45.82 Aligned_cols=25 Identities=44% Similarity=0.656 Sum_probs=22.7
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|-..||||+|||.|-..|+++||+-
T Consensus 399 PHaGfGlG~ERlv~~i~gl~nIRea 423 (435)
T COG0017 399 PHAGFGLGLERLVMYILGLDNIREA 423 (435)
T ss_pred CCcccccCHHHHHHHHhCCCcceec
Confidence 5578999999999999999999974
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 338 | ||||
| 3pco_A | 327 | Crystal Structure Of E. Coli Phenylalanine-Trna Syn | 4e-92 | ||
| 1pys_A | 350 | Phenylalanyl-Trna Synthetase From Thermus Thermophi | 1e-71 | ||
| 2rhq_A | 294 | Phers From Staphylococcus Haemolyticus- Rational Pr | 4e-65 | ||
| 2akw_A | 266 | Crystal Structure Of T.thermophilus Phenylalanyl-tr | 2e-61 | ||
| 3l4g_A | 508 | Crystal Structure Of Homo Sapiens Cytoplasmic Pheny | 2e-31 | ||
| 3cmq_A | 415 | Crystal Structure Of Human Mitochondrial Phenylalan | 1e-26 | ||
| 2du7_A | 549 | Crystal Structure Of Methanococcus Jannacshii O-Pho | 1e-06 | ||
| 2du3_A | 534 | Crystal Structure Of Archaeoglobus Fulgidus O-Phosp | 2e-05 | ||
| 2du5_A | 534 | Crystal Structure Of Archaeoglobus Fulgidus O-Phosp | 2e-05 |
| >pdb|3PCO|A Chain A, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase Complexed With Phenylalanine And Amp Length = 327 | Back alignment and structure |
|
| >pdb|1PYS|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus Length = 350 | Back alignment and structure |
|
| >pdb|2RHQ|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 294 | Back alignment and structure |
|
| >pdb|2AKW|A Chain A, Crystal Structure Of T.thermophilus Phenylalanyl-trna Synthetase Complexed With P-cl-phenylalanine Length = 266 | Back alignment and structure |
|
| >pdb|3L4G|A Chain A, Crystal Structure Of Homo Sapiens Cytoplasmic Phenylalanyl-T Synthetase Length = 508 | Back alignment and structure |
|
| >pdb|3CMQ|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanine Trna Synthetase Length = 415 | Back alignment and structure |
|
| >pdb|2DU7|A Chain A, Crystal Structure Of Methanococcus Jannacshii O-Phosphoseryl-Trna Synthetase Length = 549 | Back alignment and structure |
|
| >pdb|2DU3|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus O-Phosphoseryl- Trna Synthetase Complexed With Trnacys And O-Phosphoserine Length = 534 | Back alignment and structure |
|
| >pdb|2DU5|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT COMPLEXED WITH TRNAOPAL And O-Phosphoserine ("opal Complex") Length = 534 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Length = 327 | Back alignment and structure |
|---|
Score = 530 bits (1369), Expect = 0.0
Identities = 168/337 (49%), Positives = 226/337 (67%), Gaps = 11/337 (3%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEII 60
M+ L +L+ AK S A +++L+N + YLGK G LT + ++ + ER G +I
Sbjct: 1 MSHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTTLRELPPEERPAAGAVI 60
Query: 61 NSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIF 120
N K +++ LN + L+ L L ID++LPGR GGLHP+ RT++RIE F
Sbjct: 61 NEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRIENGGLHPVTRTIDRIESFF 120
Query: 121 YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180
+GF + GPEIE D++NF ALN P +HPAR+ HDTF+ + LLRT TS +Q
Sbjct: 121 GELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF------DTTRLLRTQTSGVQ 174
Query: 181 IRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240
IR K +PPI++I GRVYR D D TH+PMFHQ+EGL +D NISF++LKG +F+R F
Sbjct: 175 IRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNF 234
Query: 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEK 300
FE D +QIRFRPSYFPFTEPSAE+D++ ++ G WLE+ G G V+P VL N+ +DPE
Sbjct: 235 FEED-LQIRFRPSYFPFTEPSAEVDVMGKN----GKWLEVLGCGMVHPNVLRNVGIDPEV 289
Query: 301 YIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
Y GFAFG G+ERLTMLRYG+ DLR F++ ++ FLKQF
Sbjct: 290 YSGFAFGMGMERLTMLRYGVTDLRSFFENDLRFLKQF 326
|
| >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Length = 350 | Back alignment and structure |
|---|
Score = 503 bits (1298), Expect = 0.0
Identities = 137/350 (39%), Positives = 207/350 (59%), Gaps = 23/350 (6%)
Query: 7 LLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKIN 66
+L +A A + L+ K+ YLGK G LTQ +K + + + ER++ G+ +N+IK
Sbjct: 1 MLEEALAAIQNARDLEELKALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAA 60
Query: 67 IKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFD 126
++ L L++ LK +L+ ++D++LPG GGLHPI + +IF ++G+
Sbjct: 61 LEAALEAREKALEEAALKEALERERVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQ 120
Query: 127 ITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKP---------LLRTHTS 177
+GPE+E++F NF ALN P++HPAR M DTF++ P LLRTHTS
Sbjct: 121 AVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTS 180
Query: 178 PMQIRYSKINKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNF 236
PMQ+RY + PP +++ GRV+R + +D+TH +FHQ+EGL + + I+ + LKG
Sbjct: 181 PMQVRYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYEL 240
Query: 237 IRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNL 296
+ F D ++RF+P YFPF EP A+ + + +G G WLE+ GAG V+PKV ++
Sbjct: 241 AQALFGPD-SKVRFQPVYFPFVEPGAQFAVWWPEG---GKWLELGGAGMVHPKVFQAVDA 296
Query: 297 DPEK---------YIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
E+ GFAFG G+ERL MLRYGI D+R F+ G + FL+QF
Sbjct: 297 YRERLGLPPAYRGVTGFAFGLGVERLAMLRYGIPDIRYFFGGRLKFLEQF 346
|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Length = 294 | Back alignment and structure |
|---|
Score = 432 bits (1114), Expect = e-154
Identities = 130/291 (44%), Positives = 173/291 (59%), Gaps = 18/291 (6%)
Query: 57 GEIINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERI 116
+ + + L +K L L ID+TLP R + G HP+ RT+E I
Sbjct: 4 SHHHHHHSSGLVPRGSHMGTELMEK-LNQQLAEETIDVTLPSRQISIGSKHPLTRTVEEI 62
Query: 117 EKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHT 176
E +F +G++I DG E+E D+ NF ALN PK+HPAR M D+FYI ++ L+RTHT
Sbjct: 63 EDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYI------TDEILMRTHT 116
Query: 177 SPMQIRY--SKINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVY 233
SP+Q R + + P+K+I G+VYR DS D+THS F QIEGL +DKNI SDLKG
Sbjct: 117 SPVQARTMEKRNGQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTL 176
Query: 234 LNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKG-------NWLEISGAGQV 286
+ F +D +IR RPSYFPFTEPS E+D+ KG W+EI GAG V
Sbjct: 177 ELVAKKLFGAD-REIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMV 235
Query: 287 NPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
+P VL D +Y GFAFG G +R+ ML+YGI+D+R FY ++ FL+QF
Sbjct: 236 HPNVLEMAGFDSNEYSGFAFGMGPDRIAMLKYGIEDIRYFYTNDVRFLEQF 286
|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Length = 508 | Back alignment and structure |
|---|
Score = 363 bits (932), Expect = e-123
Identities = 94/371 (25%), Positives = 156/371 (42%), Gaps = 56/371 (15%)
Query: 8 LIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKINI 67
+Q ++ L + L K L + +K +++ + I+ + +
Sbjct: 135 EVQRRLQLVRGGQAEKLGEKERSELRKRKLLAE--VTLKTYWVSKGSAFSTSISKQETEL 192
Query: 68 KKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGF-D 126
E+ I + + K + G + G LHP+++ + +IF +GF +
Sbjct: 193 SPEM-ISSGSWRDRPFK------PYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMGFTE 245
Query: 127 ITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKP---------------- 170
+ IE+ F NF AL P+ HPAR HDTF++++ + P
Sbjct: 246 MPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGY 305
Query: 171 -----------------LLRTHTSPMQIRY-----SKINKPPIKVITSGRVYRIDS-DST 207
LLRTHT+ R K P+K + RV+R ++ D+T
Sbjct: 306 GSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDAT 365
Query: 208 HSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIV 267
H FHQIEG+ D ++ L GV F + +RF+P+Y P+TEPS E+
Sbjct: 366 HLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQ---LRFKPAYNPYTEPSMEVFSY 422
Query: 268 FQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFY 327
W+E+ +G P++L M L PE A+G LER TM++YGI+++R
Sbjct: 423 ---HQGLKKWVEVGNSGVFRPEMLLPMGL-PENVSVIAWGLSLERPTMIKYGINNIRELV 478
Query: 328 KGNINFLKQFT 338
+N +
Sbjct: 479 GHKVNLQMVYD 489
|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 701 | Back alignment and structure |
|---|
Score = 358 bits (919), Expect = e-119
Identities = 60/351 (17%), Positives = 123/351 (35%), Gaps = 29/351 (8%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISIN--ERKRYGE 58
E K L+ KI+ S GK + I+N++ + +
Sbjct: 38 WIETKDLIKAKKINESYP--------RIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINP 89
Query: 59 IINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEK 118
+I + K+ +L + L + ++ + + + E ++K
Sbjct: 90 VIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQK 149
Query: 119 IFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS-NNKPLLRTHTS 177
I + DG ++ + +N AL + + D F + ++K LR+H +
Sbjct: 150 ILHGYKKGTLDGDDLVLEISN--ALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMT 207
Query: 178 P---MQIRYSKINKP-PIKVITSGRVYRIDS--DSTHSPMFHQIEGLWIDKNISFSDLKG 231
+ + KP P K+ + R +R + D +H +H + + +D K
Sbjct: 208 SGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKA 267
Query: 232 VYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVL 291
+ + F ++ + + P + ++ + P WLE++ G +P L
Sbjct: 268 IAEGLLSQFGFTN-FKFIPDEKKSKYYTPETQTEV-YAYHPKLKEWLEVATFGVYSPVAL 325
Query: 292 CNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLR-----LFYKGNINFLKQF 337
+D G G+ERL M+ D+R FY+ +N
Sbjct: 326 SKYGIDVPVM---NLGLGVERLAMISGNFADVREMVYPQFYEHKLNDRNVA 373
|
| >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 685 | Back alignment and structure |
|---|
Score = 352 bits (904), Expect = e-117
Identities = 60/351 (17%), Positives = 123/351 (35%), Gaps = 29/351 (8%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISIN--ERKRYGE 58
E K L+ KI+ S GK + I+N++ + +
Sbjct: 38 WIETKDLIKAKKINESYP--------RIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINP 89
Query: 59 IINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEK 118
+I + K+ +L + L + ++ + + + E ++K
Sbjct: 90 VIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQK 149
Query: 119 IFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS-NNKPLLRTHTS 177
I + DG ++ + +N AL + + D F + ++K LR+H +
Sbjct: 150 ILHGYKKGTLDGDDLVLEISN--ALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMT 207
Query: 178 P---MQIRYSKINKP-PIKVITSGRVYRIDS--DSTHSPMFHQIEGLWIDKNISFSDLKG 231
+ + KP P K+ + R +R + D +H +H + + +D K
Sbjct: 208 SGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKA 267
Query: 232 VYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVL 291
+ + F ++ + + P + ++ + P WLE++ G +P L
Sbjct: 268 IAEGLLSQFGFTN-FKFIPDEKKSKYYTPETQTEV-YAYHPKLKEWLEVATFGVYSPVAL 325
Query: 292 CNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLR-----LFYKGNINFLKQF 337
+D G G+ERL M+ D+R FY+ +N
Sbjct: 326 SKYGIDVPVM---NLGLGVERLAMISGNFADVREMVYPQFYEHKLNDRNVA 373
|
| >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 665 | Back alignment and structure |
|---|
Score = 347 bits (891), Expect = e-115
Identities = 60/351 (17%), Positives = 123/351 (35%), Gaps = 29/351 (8%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISIN--ERKRYGE 58
E K L+ KI+ S GK + I+N++ + +
Sbjct: 38 WIETKDLIKAKKINESYP--------RIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINP 89
Query: 59 IINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEK 118
+I + K+ +L + L + ++ + + + E ++K
Sbjct: 90 VIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQK 149
Query: 119 IFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS-NNKPLLRTHTS 177
I + DG ++ + +N AL + + D F + ++K LR+H +
Sbjct: 150 ILHGYKKGTLDGDDLVLEISN--ALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMT 207
Query: 178 P---MQIRYSKINKP-PIKVITSGRVYRIDS--DSTHSPMFHQIEGLWIDKNISFSDLKG 231
+ + KP P K+ + R +R + D +H +H + + +D K
Sbjct: 208 SGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKA 267
Query: 232 VYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVL 291
+ + F ++ + + P + ++ + P WLE++ G +P L
Sbjct: 268 IAEGLLSQFGFTN-FKFIPDEKKSKYYTPETQTEV-YAYHPKLKEWLEVATFGVYSPVAL 325
Query: 292 CNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLR-----LFYKGNINFLKQF 337
+D G G+ERL M+ D+R FY+ +N
Sbjct: 326 SKYGIDVPVM---NLGLGVERLAMISGNFADVREMVYPQFYEHKLNDRNVA 373
|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Length = 534 | Back alignment and structure |
|---|
Score = 337 bits (866), Expect = e-113
Identities = 62/376 (16%), Positives = 132/376 (35%), Gaps = 54/376 (14%)
Query: 3 ELKKLLIQAKIDF----------STAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINE 52
+ +K A+ DF S + L + GK L I+ ++ +
Sbjct: 4 DPQKYRELAEKDFEAAWKAGKEILAERSPNELYPRVGFSFGKEHPLFATIQRLREAYL-- 61
Query: 53 RKRYGEIINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKG-------- 104
+ E++N + I +++++ + ++ L TLP
Sbjct: 62 SIGFSEVVNPL---IVEDVHVKKQFGREALAV--LDRCFYLATLPKPNVGISAEKIRQIE 116
Query: 105 GLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRY 164
+ + +++IF+ DG ++ + L+ + + + F
Sbjct: 117 AITKREVDSKPLQEIFHRYKKGEIDGDDLS--YLIAEVLDVDDITAVKILDEVFPEFKEL 174
Query: 165 VS-NNKPLLRTHTSPMQIRY----SKINKPPIKVITSGRVYRIDS--DSTHSPMFHQIEG 217
++ LR+H + + PIK+ + R +R + D+T +
Sbjct: 175 KPISSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASC 234
Query: 218 LWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGN- 276
+ +D+ +S D K V +R F + + R + P + ++ L G+
Sbjct: 235 VLVDEELSVDDGKAVAEALLRQFGFEN-FRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSS 293
Query: 277 ------WLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKG- 329
W+EI+ G +P L ++ Y G G+ERL M+ YG DD+R
Sbjct: 294 TKYSDGWIEIATFGIYSPTALAEYDIP---YPVMNLGLGVERLAMILYGYDDVRKMVYPQ 350
Query: 330 --------NINFLKQF 337
+++ ++
Sbjct: 351 IHGEIKLSDLDIAREI 366
|
| >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 648 | Back alignment and structure |
|---|
Score = 340 bits (873), Expect = e-113
Identities = 60/351 (17%), Positives = 123/351 (35%), Gaps = 29/351 (8%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISIN--ERKRYGE 58
E K L+ KI+ S GK + I+N++ + +
Sbjct: 38 WIETKDLIKAKKINESYP--------RIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINP 89
Query: 59 IINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEK 118
+I + K+ +L + L + ++ + + + E ++K
Sbjct: 90 VIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQK 149
Query: 119 IFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS-NNKPLLRTHTS 177
I + DG ++ + +N AL + + D F + ++K LR+H +
Sbjct: 150 ILHGYKKGTLDGDDLVLEISN--ALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMT 207
Query: 178 P---MQIRYSKINKP-PIKVITSGRVYRIDS--DSTHSPMFHQIEGLWIDKNISFSDLKG 231
+ + KP P K+ + R +R + D +H +H + + +D K
Sbjct: 208 SGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKA 267
Query: 232 VYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVL 291
+ + F ++ + + P + ++ + P WLE++ G +P L
Sbjct: 268 IAEGLLSQFGFTN-FKFIPDEKKSKYYTPETQTEV-YAYHPKLKEWLEVATFGVYSPVAL 325
Query: 292 CNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLR-----LFYKGNINFLKQF 337
+D G G+ERL M+ D+R FY+ +N
Sbjct: 326 SKYGIDVPVM---NLGLGVERLAMISGNFADVREMVYPQFYEHKLNDRNVA 373
|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Length = 415 | Back alignment and structure |
|---|
Score = 304 bits (781), Expect = e-102
Identities = 89/307 (28%), Positives = 130/307 (42%), Gaps = 63/307 (20%)
Query: 78 LKKKQLKVSLKTN--KIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIG--------FDI 127
L K +N + +T GR + HP+ ER+++ FY F +
Sbjct: 17 LLGKSYPQDDHSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSV 76
Query: 128 TDG-PEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186
D + T + NF +L P +HP+R D +Y+ N +LR HTS Q
Sbjct: 77 YDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYL------NRTHMLRAHTSAHQWDLLHA 130
Query: 187 NKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKN---------------------- 223
V+ G VYR D DS H P+FHQ+E + +
Sbjct: 131 GLDAFLVV--GDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDGESLQLFEQSSRS 188
Query: 224 -------------ISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQD 270
+ DLK + F + ++IR+ YFPFT PS E++I F
Sbjct: 189 AHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDE-LEIRWVDCYFPFTHPSFEMEINF-- 245
Query: 271 GPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGN 330
G WLE+ G G + +++ + IG+AFG GLERL M+ Y I D+RLF+ +
Sbjct: 246 ---HGEWLEVLGCGVMEQQLVNSAGAQD--RIGWAFGLGLERLAMILYDIPDIRLFWCED 300
Query: 331 INFLKQF 337
FLKQF
Sbjct: 301 ERFLKQF 307
|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Length = 549 | Back alignment and structure |
|---|
Score = 305 bits (782), Expect = e-100
Identities = 59/353 (16%), Positives = 119/353 (33%), Gaps = 36/353 (10%)
Query: 3 ELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNI------SINERKRY 56
E + L+ ID GK + + I+ ++
Sbjct: 32 ETRALIKDKHIDNKYP--------RLKPVYGKPHPVMETIERLRQAYLRMGFEEMINPVI 83
Query: 57 GEIINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERI 116
+ + K + + + L + + G+ ER+
Sbjct: 84 VDEMEIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKVEIIK---NLGIDIDEEKKERL 140
Query: 117 EKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYI-KNRYVSNNKPLLRTH 175
++ + DG ++ F ALN + + F K+ + LR+H
Sbjct: 141 REVLHLYKKGAIDGDDLV--FEIAKALNVSNEMGLKVLETAFPEFKDLKPESTTLTLRSH 198
Query: 176 TSPMQIR----YSKINKPPIKVITSGRVYRIDS--DSTHSPMFHQIEGLWIDKNISFSDL 229
+ K K P+K+ + R +R + D +H +H + + +++S D
Sbjct: 199 MTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDG 258
Query: 230 KGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPK 289
K V + F + + + + P + ++ + P G W+E++ G +P
Sbjct: 259 KVVAEGLLAQFGFTK-FKFKPDEKKSKYYTPETQTEV-YAYHPKLGEWIEVATFGVYSPI 316
Query: 290 VLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRL-----FYKGNINFLKQF 337
L N+D G G+ERL M+ YG +D+R FY+ ++
Sbjct: 317 ALAKYNIDVPVM---NLGLGVERLAMIIYGYEDVRAMVYPQFYEYRLSDRDIA 366
|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Length = 549 | Back alignment and structure |
|---|
Score = 99.3 bits (247), Expect = 3e-23
Identities = 30/195 (15%), Positives = 69/195 (35%), Gaps = 5/195 (2%)
Query: 57 GEIINSIKINIKKELNIHRDILKK--KQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLE 114
+ + ++ +IKK L + + ++ + +K ID P G HP+M T+E
Sbjct: 5 HKRDDKMRFDIKKVLELAEKDFETAWRETRALIKDKHIDNKYPRLKPVYGKPHPVMETIE 64
Query: 115 RIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRT 174
R+ + + +GF+ P I + + P+ FY+ +
Sbjct: 65 RLRQAYLRMGFEEMINPVIVDEMEIYKQFG-PEAMAVL--DRCFYLAGLPRPDVGLGNEK 121
Query: 175 HTSPMQIRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYL 234
+ + ++ +Y+ + +F + L + + L+ +
Sbjct: 122 VEIIKNLGIDIDEEKKERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFP 181
Query: 235 NFIRVFFESDNIQIR 249
F + ES + +R
Sbjct: 182 EFKDLKPESTTLTLR 196
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* Length = 290 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 1e-36
Identities = 35/233 (15%), Positives = 66/233 (28%), Gaps = 32/233 (13%)
Query: 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS 166
+ + + I + F GF P + + +
Sbjct: 77 NYLGKLEREITRFFVDRGFLEIKSPILIP-LEYIERMGIDNDTELSKQIFRV-------- 127
Query: 167 NNKPLLRTHTSPMQIRY----SKINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWID 221
+ LR +P Y + PIK+ G YR +S H F + +
Sbjct: 128 DKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMG 187
Query: 222 KNISFSDLKGVYLNFIRVFFESDNIQ-IRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEI 280
+ +L+ + I F I S F + + LE+
Sbjct: 188 SGCTRENLESI----ITDFLNHLGIDFKIVGDSCMVFGDTLDVM----------HGDLEL 233
Query: 281 SGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINF 333
S A + +D G GLERL +++ +++ + +
Sbjct: 234 SSALVGPIPLDREWGIDKP---WIGAGFGLERLLKVKHDFKNIKRAARSESYY 283
|
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 46/223 (20%), Positives = 78/223 (34%), Gaps = 37/223 (16%)
Query: 90 NKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNH 149
N I +TLP + P+ + E + + GF E F L S ++
Sbjct: 375 NNIQMTLP-KTYTIANQFPLNKLTELLRHDMAAAGFT-----EA----LTFA-LCSQEDI 423
Query: 150 PARSMHDTFYIKNRYVSNNKPL------LRTHTSP---MQIRYSKINKPPIKVITSGRVY 200
+ D K ++SN P RT P I ++ P+K+ +
Sbjct: 424 ADKLGVDISATKAVHISN--PKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIV 481
Query: 201 RIDSDS-THSPMFHQIEGLWIDKNISFSDLKGV---YLNFIRVFFESDNIQIRFRPSYFP 256
DS++ + + + ++ +KN F + G+ + + V D + S P
Sbjct: 482 IKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGP 541
Query: 257 FTEP--SAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD 297
P AEI F G G L G ++P V+ L
Sbjct: 542 AFFPGRCAEI---FARGQSVG-KL-----GVLHPDVITKFELT 575
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 338 | |||
| 3pco_A | 327 | Phenylalanyl-tRNA synthetase, alpha subunit; amino | 100.0 | |
| 1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 100.0 | |
| 3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacy | 100.0 | |
| 2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterote | 100.0 | |
| 3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; class | 100.0 | |
| 2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 100.0 | |
| 2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 100.0 | |
| 2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 100.0 | |
| 2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 100.0 | |
| 2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 100.0 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 100.0 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 100.0 | |
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 100.0 | |
| 3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t | 100.0 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 100.0 | |
| 3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, MC | 100.0 | |
| 3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692. | 100.0 | |
| 1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 100.0 | |
| 3pco_B | 795 | Phenylalanyl-tRNA synthetase, beta chain; aminoacy | 99.96 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 99.9 | |
| 1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe | 99.7 | |
| 1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, LI | 99.48 | |
| 1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; | 99.37 | |
| 3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tR | 99.29 | |
| 3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, | 99.22 | |
| 1e1o_A | 504 | Lysyl-tRNA synthetase, heat inducible; ligase, ami | 99.2 | |
| 1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 99.16 | |
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 99.15 | |
| 3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, | 99.13 | |
| 3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi | 99.1 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 99.06 | |
| 3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; am | 99.06 | |
| 1eov_A | 487 | ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy | 99.02 | |
| 4e51_A | 467 | Histidine--tRNA ligase; seattle structural genomic | 98.78 | |
| 1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; | 98.73 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 98.61 | |
| 3rac_A | 373 | Histidine-tRNA ligase; structural genomics, PSI-bi | 98.61 | |
| 1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo | 98.61 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 98.58 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 98.56 | |
| 2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 98.55 | |
| 1h4v_B | 421 | Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA | 98.51 | |
| 3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas | 98.49 | |
| 1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase | 98.48 | |
| 1ses_A | 421 | Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A | 98.46 | |
| 3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t | 98.43 | |
| 1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; cla | 98.43 | |
| 1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genom | 98.41 | |
| 1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase | 98.41 | |
| 4ah6_A | 617 | Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo | 98.33 | |
| 4g84_A | 464 | Histidine--tRNA ligase, cytoplasmic; synthetase; 2 | 98.31 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 98.27 | |
| 1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 98.27 | |
| 1nj1_A | 501 | PROR, proline-tRNA synthetase, proline--tRNA ligas | 98.25 | |
| 2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 98.18 | |
| 2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- T synt | 98.11 | |
| 3uh0_A | 460 | Threonyl-tRNA synthetase, mitochondrial; threonine | 98.1 | |
| 3vbb_A | 522 | Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l | 98.08 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 98.02 | |
| 3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum per | 97.99 | |
| 3lss_A | 484 | Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.98 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 97.97 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 97.92 | |
| 3ial_A | 518 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.88 | |
| 2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud | 97.88 | |
| 4hvc_A | 519 | Bifunctional glutamate/proline--tRNA ligase; ligas | 97.83 | |
| 1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, | 97.79 | |
| 3qne_A | 485 | Seryl-tRNA synthetase, cytoplasmic; amino acid bio | 97.71 | |
| 1ati_A | 505 | Glycyl-tRNA synthetase; protein biosynthesis, liga | 97.69 | |
| 1usy_A | 275 | ATP phosphoribosyltransferase regulatory subunit; | 97.61 | |
| 2cja_A | 522 | Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE | 97.45 | |
| 3mf2_A | 346 | BLL0957 protein; aminoacyl-tRNA synthetase, seryl- | 97.33 | |
| 2zt5_A | 693 | Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP | 97.25 | |
| 3ikl_A | 459 | DNA polymerase subunit gamma-2, mitochondrial; tra | 94.26 | |
| 4ah6_A | 617 | Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo | 93.43 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 90.08 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 86.12 |
| >3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-98 Score=716.43 Aligned_cols=327 Identities=51% Similarity=0.924 Sum_probs=232.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcchHHHHHHHhcCCChhHhhhhchhhHHHHHHHHHHHHHHHHHHHH
Q psy9576 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKINIKKELNIHRDILKK 80 (338)
Q Consensus 1 ~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~lGkkg~l~~l~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~~ 80 (338)
|.+++++++++.++|++|+|+++|+++|++||||||.||.++++|+++|+||||++|+.+|++|+.++++++++++.|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~lgk~g~~~~~~~~~~~~~~~~r~~~g~~~n~~k~~~~~~~~~~~~~l~~ 80 (327)
T 3pco_A 1 MSHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTTLRELPPEERPAAGAVINEAKEQVQQALNARKAELES 80 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCccHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceee
Q psy9576 81 KQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYI 160 (338)
Q Consensus 81 ~~~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i 160 (338)
+++++++++++||+|+|++..+.|+.||++++.++||++|.++||+|+++|+++++++||++||+|++||+|+++|||||
T Consensus 81 ~~~~~~~~~e~id~TLP~~~~~~G~~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i 160 (327)
T 3pco_A 81 AALNARLAAETIDVSLPGRRIENGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF 160 (327)
T ss_dssp -----CTTTTCCCTTSCCCCCCCCCCCHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBS
T ss_pred HHHHHHHhhCCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCcceEeccchHHHHHHHhcCCCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 161 KNRYVSNNKPLLRTHTSPMQIRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 161 ~np~~~~~~~~LRt~lsp~~l~~l~~~~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
++. ++|||||||+|+++|+++.+|+|+||+|+|||+|.|+||+|+|||++|+++|++++|+||||+|+.|++.+
T Consensus 161 ~e~------~vLRThtsp~~lr~l~~~~~pirifeiGrVyR~d~d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 161 DTT------RLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNF 234 (327)
T ss_dssp SSS------CEECSCTHHHHHHHHTTCCSSCCBCCEECCBCSCCBTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred CCC------ceecccCCHHHHHHHHhCCCCeeEEeeccEEecCCCcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 744 89999999999999998889999999999999998899999999999999999999999999999999999
Q ss_pred ccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHcCC
Q psy9576 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGI 320 (338)
Q Consensus 241 fg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~~i 320 (338)
||. +.+++|+|+||||||||++++|+|. +++|+||||||||||+|++++||++++|+|||||||+|||+|++|||
T Consensus 235 fg~-~~~vr~rps~fPftePs~eadI~~~----~G~w~EIgg~G~VHP~Vl~~~gid~~~~~g~AFglgleRlaml~~~i 309 (327)
T 3pco_A 235 FEE-DLQIRFRPSYFPFTEPSAEVDVMGK----NGKWLEVLGCGMVHPNVLRNVGIDPEVYSGFAFGMGMERLTMLRYGV 309 (327)
T ss_dssp HCS-CSEEEEEEECCTTEEEEEEEEEECS----SSCEEEEEEEEEECHHHHHTTTCCTTTCEEEEEEEEHHHHHHHHHTC
T ss_pred hCC-CceEEEecCcCCCCCCcEEEEEEEe----CCCeEEEEEEEEECHHHHHHcCCCCccceEEEEEechHHHHHHHcCC
Confidence 984 5789999999999999999999981 24599999999999999999999998999999999999999999999
Q ss_pred CcccccccCChhhhccCC
Q psy9576 321 DDLRLFYKGNINFLKQFT 338 (338)
Q Consensus 321 ~diR~~~~~d~rfl~qf~ 338 (338)
+|||+||+||+|||+||+
T Consensus 310 ~diR~~~~~d~rfl~qf~ 327 (327)
T 3pco_A 310 TDLRSFFENDLRFLKQFK 327 (327)
T ss_dssp SCGGGGTTCCHHHHHTTC
T ss_pred cHHHHHHhcChhHHhccC
Confidence 999999999999999995
|
| >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-91 Score=674.93 Aligned_cols=326 Identities=41% Similarity=0.805 Sum_probs=229.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhcCCcchHHHHHHHhcCCChhHhhhhchhhHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q psy9576 8 LIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKINIKKELNIHRDILKKKQLKVSL 87 (338)
Q Consensus 8 ~~~~~~~i~~~~~~~~l~~~~~~~lGkkg~l~~l~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~~~~~~~~~ 87 (338)
.+++.++|++|+|+++|+++|++||||||.||.++++|+++|+||||++|+.+|++|+.++++++++++.|+.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~l~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~g~~~n~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (350)
T 1b7y_A 2 LEEALAAIQNARDLEELKALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAALEAALEAREKALEEAALKEAL 81 (350)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhCCccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccC-
Q psy9576 88 KTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS- 166 (338)
Q Consensus 88 ~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~- 166 (338)
++|+||+|+|+...+.|+.||++++.++||++|.++||+|+.+|.++++++||++||+|++||||+++|||||+||. +
T Consensus 82 ~~~~i~~tlP~~~~~~g~~hp~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~-s~ 160 (350)
T 1b7y_A 82 ERERVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEG-FR 160 (350)
T ss_dssp ----CCTTSCCCCCCCCBCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSS-CC
T ss_pred hhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCcc-cc
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999995 4
Q ss_pred ---------CCcceEeccchHHHHHHHhcCCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHH
Q psy9576 167 ---------NNKPLLRTHTSPMQIRYSKINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNF 236 (338)
Q Consensus 167 ---------~~~~~LRt~lsp~~l~~l~~~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~l 236 (338)
++..+|||||+|+++++|.++.+|+|+||+|+|||+|. |++|+|+|||++|+++|++++|+||||+|+.|
T Consensus 161 ~~~~~~~~~~~~~vLRt~tsp~llr~l~~~~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~f~dLKg~le~l 240 (350)
T 1b7y_A 161 LEGPLGEEVEGRLLLRTHTSPMQVRYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYEL 240 (350)
T ss_dssp CBCTTSCBCCSCEEECSSSTHHHHHHHHHCCSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHH
T ss_pred ccccccccccccceeeccchHHHHHHHHhcCCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCCHHHHHHHHHHH
Confidence 48899999999999999998888999999999999995 89999999999999999999999999999999
Q ss_pred HHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhC-------CCCC--CCeEEEEEe
Q psy9576 237 IRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNM-------NLDP--EKYIGFAFG 307 (338)
Q Consensus 237 l~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~-------gi~~--~~~~~~afe 307 (338)
++.+||. +.+++|+|+||||||||++++|+|. + ++||+|||+||||||+|++++ ||++ ++|+|||||
T Consensus 241 l~~lfG~-~~~~r~rps~fPft~Ps~e~~i~~~-~--~g~w~eIg~~G~VhP~Vl~~~~~~~~~~gid~~~~~~~~~afg 316 (350)
T 1b7y_A 241 AQALFGP-DSKVRFQPVYFPFVEPGAQFAVWWP-E--GGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGVTGFAFG 316 (350)
T ss_dssp HHHHSCS-SCCEEEEECCBTTEEEEEEEEEEET-T--TTEEEEEEEEEEECHHHHHHHHHHHHHTTCCCCCTTCEEEEEE
T ss_pred HHhhcCC-CceEEEecCCCCCCCCccEEEEEEE-e--CCCeEEEEEEEEEeHHHHHhhccccccCCCCCccccceEEEEE
Confidence 9999995 4579999999999999999999872 1 346999999999999999999 9998 889999999
Q ss_pred echhHHHHHHcCCCcccccccCChhhhccCC
Q psy9576 308 SGLERLTMLRYGIDDLRLFYKGNINFLKQFT 338 (338)
Q Consensus 308 lglerlam~~~~i~diR~~~~~d~rfl~qf~ 338 (338)
||||||+|++|||+|||+||+||+|||+||+
T Consensus 317 lglerl~ml~~gi~DiR~~~~~d~rfl~qf~ 347 (350)
T 1b7y_A 317 LGVERLAMLRYGIPDIRYFFGGRLKFLEQFK 347 (350)
T ss_dssp EEHHHHHHHHTTCCCGGGTTSCCHHHHGGGT
T ss_pred EeHHHHHHHHcCCChHHHHhcCCHHHHHhhh
Confidence 9999999999999999999999999999995
|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-64 Score=499.61 Aligned_cols=238 Identities=36% Similarity=0.624 Sum_probs=217.7
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEe-eCCccccchhhhhhcCCCCCCCCCcCccceeecCCccC----
Q psy9576 92 IDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDIT-DGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS---- 166 (338)
Q Consensus 92 id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev-~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~---- 166 (338)
+++..|+...+.|+.||++++.++||++|.+|||+|+ ++|.++++++||++||+|++||||+++|||||++|...
T Consensus 210 y~~~~~g~~~~~G~lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~ 289 (508)
T 3l4g_A 210 YNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLP 289 (508)
T ss_dssp CCSSSCCCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCC
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCcccccccc
Confidence 4566888889999999999999999999999999998 57999999999999999999999999999999998421
Q ss_pred C-----------------------------CcceEeccchHHHHHHHhc-----CCCCceEEEeeeEEEeC-CCCCCCcc
Q psy9576 167 N-----------------------------NKPLLRTHTSPMQIRYSKI-----NKPPIKVITSGRVYRID-SDSTHSPM 211 (338)
Q Consensus 167 ~-----------------------------~~~~LRt~lsp~~l~~l~~-----~~~pirifeiG~Vyr~d-~d~th~~~ 211 (338)
+ ++++|||||+|+++++|++ +.+|+|+||+|+|||+| .|+||+|+
T Consensus 290 e~~~~~v~~~He~g~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatHlpe 369 (508)
T 3l4g_A 290 MDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAE 369 (508)
T ss_dssp HHHHHHHHHHHHTCBTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSE
T ss_pred HHHHHhhhhhhhccccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCcCCe
Confidence 1 5789999999999999964 35899999999999999 48999999
Q ss_pred eeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHh
Q psy9576 212 FHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVL 291 (338)
Q Consensus 212 f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl 291 (338)
|||++++++|++++|+||||+|+.|++.+ |. .+++|+|+||||||||+++++++ +| .++|+|||+||||||+||
T Consensus 370 FhQlegl~~~~~v~f~dLKg~Le~~l~~l-G~--~~~rfrps~fPftePS~ev~i~~-~G--~~~W~EIGg~G~vhP~VL 443 (508)
T 3l4g_A 370 FHQIEGVVADHGLTLGHLMGVLREFFTKL-GI--TQLRFKPAYNPYTEPSMEVFSYH-QG--LKKWVEVGNSGVFRPEML 443 (508)
T ss_dssp EEEEEEEEEEESCCHHHHHHHHHHHHHTT-TC--CCCEEEECCCTTCSSEEEEEECC-ST--TSSCEEEEEEECCCHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHc-CC--cceEeeccCCCCCCCeEEEEEEE-CC--ccceEEEEeeeeEcHHHH
Confidence 99999999999999999999999999998 84 56899999999999999998876 22 236999999999999999
Q ss_pred hhCCCCCCCeEEEEEeechhHHHHHHcCCCcccccccC--Chhhhcc
Q psy9576 292 CNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKG--NINFLKQ 336 (338)
Q Consensus 292 ~~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~~--d~rfl~q 336 (338)
+++|| |++|+|||||||||||+|++|||+|||+||++ |+.|++.
T Consensus 444 ~~~Gi-pe~~~v~AfgLgLeRLaml~~gi~diR~l~~~~~dl~~~~~ 489 (508)
T 3l4g_A 444 LPMGL-PENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYD 489 (508)
T ss_dssp GGGTC-CTTEEEEEEEEESHHHHTTTTTCSCGGGTSSTTCCHHHHHH
T ss_pred HHCCC-CCCceEEEEEecHHHHHHHHcCCcHHHHHhcCCcCHHHHhh
Confidence 99999 56699999999999999999999999999998 8999875
|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-63 Score=469.85 Aligned_cols=248 Identities=51% Similarity=0.908 Sum_probs=228.5
Q ss_pred HHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecC
Q psy9576 83 LKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKN 162 (338)
Q Consensus 83 ~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~n 162 (338)
+......++||+|+|....+.|..||.+++.+.||++|+++||+|+++|.++++.+||+++++|.+||+|+++|+++|++
T Consensus 29 v~R~~gyd~i~~tlp~~~~~~g~~~~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~e 108 (294)
T 2rhq_A 29 LNQQLAEETIDVTLPSRQISIGSKHPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITD 108 (294)
T ss_dssp HHHHTTTTCCCTTSCCCCCCCCCCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSS
T ss_pred HHHHhCcccCCccCCCcccCCCCCCHHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEcC
Confidence 34445678999999988889999999999999999999999999999999988899999999999999999999999963
Q ss_pred CccCCCcceEeccchHHHHHHHhcC--CCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHH
Q psy9576 163 RYVSNNKPLLRTHTSPMQIRYSKIN--KPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRV 239 (338)
Q Consensus 163 p~~~~~~~~LRt~lsp~~l~~l~~~--~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~ 239 (338)
.++|||||+|+++++|+++ .+|+|+||+|+|||+|. |.+|.|+|+|++++++|++++|+|+||+|+.+++.
T Consensus 109 ------~~vLRtsl~p~ll~~l~~N~~~~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~ 182 (294)
T 2rhq_A 109 ------EILMRTHTSPVQARTMEKRNGQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKK 182 (294)
T ss_dssp ------SEEECSSSHHHHHHHHHHTTTCSCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred ------cceeeccCHHHHHHHHHhcCCCCCccEEEEcCEEecCCCCCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3899999999999999876 78999999999999985 78999999999999999999999999999999999
Q ss_pred hccCCCeeEEEccCCCCCCCCceEEEEEee--cC------CCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechh
Q psy9576 240 FFESDNIQIRFRPSYFPFTEPSAEIDIVFQ--DG------PLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLE 311 (338)
Q Consensus 240 lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~--~g------~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelgle 311 (338)
+||. ..+++|+|+++||+|||++++|+|. +| + +.+|++||+||+|||+|++++||++++|+|||||||||
T Consensus 183 l~g~-~~~~~~~~~~~p~~hPg~~a~i~~~~~~g~~~~~~~-~~~w~eiG~~G~vhP~Vl~~~gl~~~~~~~~afel~le 260 (294)
T 2rhq_A 183 LFGA-DREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCK-HTGWIEILGAGMVHPNVLEMAGFDSNEYSGFAFGMGPD 260 (294)
T ss_dssp HHCT-TCCEEEEECCBTTEEEEEEEEEECSSSTTSCCTTTT-TSSEEEEEEEEEECHHHHHTTTCCTTTCEEEEEEECHH
T ss_pred HhCC-CcEEEEecCcCCCCCCcEEEEEEEEccCCccccccc-CCCCeEEEEEeeECHHHHHHcCCCCCcCeEEEEEEeHH
Confidence 8885 4568999999999999999999872 22 3 45899999999999999999999988899999999999
Q ss_pred HHHHHHcCCCcccccccCChhhhccCC
Q psy9576 312 RLTMLRYGIDDLRLFYKGNINFLKQFT 338 (338)
Q Consensus 312 rlam~~~~i~diR~~~~~d~rfl~qf~ 338 (338)
||+|++|||+|||+||+||+|||+||+
T Consensus 261 ~L~m~~~~i~diR~~~~~d~rfl~qf~ 287 (294)
T 2rhq_A 261 RIAMLKYGIEDIRYFYTNDVRFLEQFK 287 (294)
T ss_dssp HHHHHHHTCCCTTHHHHCCHHHHTTCC
T ss_pred HHHHHHcCCCHHHHHhcCCHHHHHHhC
Confidence 999999999999999999999999995
|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-59 Score=463.34 Aligned_cols=227 Identities=36% Similarity=0.647 Sum_probs=209.6
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHhhC--------CCeEeeC-CccccchhhhhhcCCCCCCCCCcCccceeecCCcc
Q psy9576 95 TLPGRGKNKGGLHPIMRTLERIEKIFYSI--------GFDITDG-PEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV 165 (338)
Q Consensus 95 tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~--------GF~Ev~~-~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~ 165 (338)
|+|+...+.|+.||++++.++||++|.++ ||+|+++ +.++++++|||+||+|++||||+++|||||+..
T Consensus 36 ~~~~~~~~~g~~hPl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~~~-- 113 (415)
T 3cmq_A 36 TRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRT-- 113 (415)
T ss_dssp TTTTCCGGGSTTCHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSSSS--
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEecCC--
Confidence 48988899999999999999999999999 9999998 999999999999999999999999999999765
Q ss_pred CCCcceEeccchHHHHHHHhcCCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEE------------cCCC--------
Q psy9576 166 SNNKPLLRTHTSPMQIRYSKINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWI------------DKNI-------- 224 (338)
Q Consensus 166 ~~~~~~LRt~lsp~~l~~l~~~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~------------g~~~-------- 224 (338)
.+|||||||+|+++|+.+. | |+|++|+|||+|. |++|.|+|||++++.+ ++.+
T Consensus 114 ----~vLRThts~~~~~~l~~~~-~-k~~~~G~VyR~D~~da~h~n~fhQ~egv~lfe~g~~f~~~~~~~~la~~~~g~~ 187 (415)
T 3cmq_A 114 ----HMLRAHTSAHQWDLLHAGL-D-AFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDGESLQLFEQSSR 187 (415)
T ss_dssp ----EEECSSGGGGHHHHHHTTC-S-EEEEEEEEECCCCCBTTBCSEEEEEEEEEEEEHHHHTTTSTTGGGCCSBCCCCC
T ss_pred ----eEEcCCCcHHHHHHHHHCC-C-CEEEeeeEEeccchhhhhhHHhcCCCcEEEEeccceeccccccceEEEEEecCc
Confidence 8999999999999998764 4 9999999999994 8999999999999998 3222
Q ss_pred ---------------CHHHHHHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHH
Q psy9576 225 ---------------SFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPK 289 (338)
Q Consensus 225 ---------------~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~ 289 (338)
+|+|+||+|+.+++.+||. ..+++|+|+++||+|||.+++|+| +++|+|++|||+|||+
T Consensus 188 ~~~~~~~~~~~~vd~~f~dlKg~le~ll~~lfg~-~~~~~~~~~~~p~~hPgr~a~I~~-----~g~wlE~lG~G~lhP~ 261 (415)
T 3cmq_A 188 SAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGD-ELEIRWVDCYFPFTHPSFEMEINF-----HGEWLEVLGCGVMEQQ 261 (415)
T ss_dssp CSSCCTTBCHHHHHHHHHHHHHHHHHHHHHHHCT-TCCEEEEEEEETTEEEEEEEEEEE-----TTEEEEEEEEEEECHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHcCC-CceEEEecCCCCCCCCceEEEEEE-----CCeeEEEEEEEEeCHH
Confidence 2799999999999998896 446899999999999999999999 5679999999999999
Q ss_pred HhhhCCCCCCCeEE-EEEeechhHHHHHHcCCCcccccccCChhhhccCC
Q psy9576 290 VLCNMNLDPEKYIG-FAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQFT 338 (338)
Q Consensus 290 Vl~~~gi~~~~~~~-~afelglerlam~~~~i~diR~~~~~d~rfl~qf~ 338 (338)
|++++||+ .++ ||||||||||+|++|||+|||+||+||+|||+||+
T Consensus 262 Vl~~~gl~---~~vg~afel~le~l~~~~~~i~DiR~~~~~d~rfl~qf~ 308 (415)
T 3cmq_A 262 LVNSAGAQ---DRIGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFC 308 (415)
T ss_dssp HHHHTTCT---TEEEEEEEEEHHHHHHHHSCCCCGGGGGCCCHHHHGGGC
T ss_pred HHHHcCCC---CcceEEEEEcHHHHhhhhcCcchhhhhhcccHHHHHhcc
Confidence 99999997 345 99999999999999999999999999999999994
|
| >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-50 Score=404.91 Aligned_cols=232 Identities=22% Similarity=0.359 Sum_probs=205.4
Q ss_pred hhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCC-CCCCcCcc-ceeecCC
Q psy9576 86 SLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKN-HPARSMHD-TFYIKNR 163 (338)
Q Consensus 86 ~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~-hpar~~~d-t~~i~np 163 (338)
.+++.++|+++|....+.|+.||++++.++||++|.+|||+|+++|.++++++|| |.+ ||||+++| ||||++|
T Consensus 44 ~~~~~~id~~~P~~~~~~G~~HPl~~~~~~IReif~~mGF~E~~~p~vese~~n~-----pq~gHPAR~~~D~tFyL~~P 118 (685)
T 2odr_D 44 LIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIY-----KQFGPEAMAVLDRCFYLAGL 118 (685)
T ss_dssp GSCCCCGGGSTTTCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHH-----HHHGGGHHHHHHTCEEEEBC
T ss_pred hccccccCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCEEeehHHhC-----CCcCCCccccCCcEEEECCC
Confidence 4778899999999888999999999999999999999999999999999999984 667 99999999 9999986
Q ss_pred cc---------------------------------------------------------------------------CCC
Q psy9576 164 YV---------------------------------------------------------------------------SNN 168 (338)
Q Consensus 164 ~~---------------------------------------------------------------------------~~~ 168 (338)
.. ..+
T Consensus 119 ~~~~vg~~~~~~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~ 198 (685)
T 2odr_D 119 PRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSS 198 (685)
T ss_dssp CC---------------------------------------------------------------------CCCCCCBCC
T ss_pred CCCccccchhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccc
Confidence 30 014
Q ss_pred cceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhcc
Q psy9576 169 KPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242 (338)
Q Consensus 169 ~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg 242 (338)
+++|||||+|+++.+++. +.+|+|+||+|+|||+| . |++|.++|||++++++|++++|+||||+|+.|++.+ |
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L-G 277 (685)
T 2odr_D 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF-G 277 (685)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT-T
T ss_pred cCcccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence 789999999988777643 46899999999999998 4 789999999999999999999999999999999998 8
Q ss_pred CCCeeEEEccC------CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHH
Q psy9576 243 SDNIQIRFRPS------YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTML 316 (338)
Q Consensus 243 ~~~~~~r~~ps------~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~ 316 (338)
. .+++|+|+ ||||++ +++++.+ ++ .+||.+||+||||||+|++++||+ .++||||||||||+|+
T Consensus 278 i--~~vrfrpse~~~p~yHPGre--AEI~V~~--~g-~~GW~EIG~~GeVHPeVLk~~GId---~~V~AFELgLErLaml 347 (685)
T 2odr_D 278 F--TNFKFIPDEKKSKYYTPETQ--TEVYAYH--PK-LKEWLEVATFGVYSPVALSKYGID---VPVMNLGLGVERLAMI 347 (685)
T ss_dssp C--CCEEEEECTTCCTTBCTTCC--EEEEEEE--TT-TTEEEEEEEEEEBCHHHHHHTTCC---SCEEEEEEEHHHHHHH
T ss_pred C--CeEEEEECCCCCCCcCCceE--EEEEEec--CC-CCCCEEEEEEeEECHHHHHHcCCC---CCEEEEEEeHHHHHHH
Confidence 4 46889887 677776 6666654 11 237999999999999999999998 6789999999999999
Q ss_pred HcCCCcccccccCCh-hh
Q psy9576 317 RYGIDDLRLFYKGNI-NF 333 (338)
Q Consensus 317 ~~~i~diR~~~~~d~-rf 333 (338)
+|+++|||.||.+|+ ||
T Consensus 348 k~gi~DIR~~~~~dISRF 365 (685)
T 2odr_D 348 SGNFADVREMVYPQFYEH 365 (685)
T ss_dssp HTTCSCHHHHHCGGGSCC
T ss_pred hcCCCcccccccCCcCCC
Confidence 999999999999999 88
|
| >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-50 Score=404.88 Aligned_cols=232 Identities=22% Similarity=0.359 Sum_probs=205.5
Q ss_pred hhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCC-CCCCcCcc-ceeecCC
Q psy9576 86 SLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKN-HPARSMHD-TFYIKNR 163 (338)
Q Consensus 86 ~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~-hpar~~~d-t~~i~np 163 (338)
.+++.++|+++|....+.|+.||++++.++||++|.+|||+|+++|.++++++|| |.+ ||||+++| ||||++|
T Consensus 44 ~~~~~~id~~~P~~~~~~G~~HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~-----pq~gHpAR~~~D~tFyL~~P 118 (665)
T 2odr_A 44 LIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIY-----KQFGPEAMAVLDRCFYLAGL 118 (665)
T ss_dssp GSCCCCTTTSGGGSCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHH-----HHHGGGHHHHHHTCEEEEBC
T ss_pred hccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhC-----CCcCCCccccCCcEEEECCC
Confidence 4788899999999888999999999999999999999999999999999999984 667 99999999 9999986
Q ss_pred cc---------------------------------------------------------------------------CCC
Q psy9576 164 YV---------------------------------------------------------------------------SNN 168 (338)
Q Consensus 164 ~~---------------------------------------------------------------------------~~~ 168 (338)
.. ..+
T Consensus 119 ~~~~vg~~~~~~~~i~~~g~~is~~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~a~ 198 (665)
T 2odr_A 119 PRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSS 198 (665)
T ss_dssp CC---------------------------------------------------------------------CCCCCCBCC
T ss_pred CCCccccchhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccc
Confidence 30 014
Q ss_pred cceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhcc
Q psy9576 169 KPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242 (338)
Q Consensus 169 ~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg 242 (338)
+++|||||+|+++.+++. +.+|+|+||+|+|||+| . |++|.++|||++++++|++++|+||||+|+.|++.+ |
T Consensus 199 ~sVLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L-G 277 (665)
T 2odr_A 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF-G 277 (665)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT-T
T ss_pred cCcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence 789999999988777643 46899999999999998 4 789999999999999999999999999999999998 8
Q ss_pred CCCeeEEEccC------CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHH
Q psy9576 243 SDNIQIRFRPS------YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTML 316 (338)
Q Consensus 243 ~~~~~~r~~ps------~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~ 316 (338)
. .+++|+|+ ||||++ +++++.+ ++ .+||.+||+||||||+|++++||+ .++||||||||||+|+
T Consensus 278 i--~~vrfrpse~~~p~yhPGre--AEI~V~~--~g-~~GW~EIG~~GeVHPeVLk~~GId---~~V~AFELgLErLaml 347 (665)
T 2odr_A 278 F--TNFKFIPDEKKSKYYTPETQ--TEVYAYH--PK-LKEWLEVATFGVYSPVALSKYGID---VPVMNLGLGVERLAMI 347 (665)
T ss_dssp C--CCEEEEECTTCCTTBCTTCC--EEEEEEE--TT-TTEEEEEEEEEEBCHHHHHHTTCC---SCEEEEEEEHHHHHHH
T ss_pred C--CeEEEEECCCCCCCcCCceE--EEEEEec--CC-CCCCEEEEEEeEECHHHHHHcCCC---CCEEEEEEeHHHHHHH
Confidence 4 46889887 677776 6666654 11 237999999999999999999998 6789999999999999
Q ss_pred HcCCCcccccccCCh-hh
Q psy9576 317 RYGIDDLRLFYKGNI-NF 333 (338)
Q Consensus 317 ~~~i~diR~~~~~d~-rf 333 (338)
+|+++|||.||.+|+ ||
T Consensus 348 ~~gi~DIR~~~~~diSRF 365 (665)
T 2odr_A 348 SGNFADVREMVYPQFYEH 365 (665)
T ss_dssp HTTCSCHHHHHCGGGSCC
T ss_pred hcCCCcccccccCCcCCC
Confidence 999999999999999 88
|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-50 Score=403.14 Aligned_cols=234 Identities=25% Similarity=0.436 Sum_probs=205.1
Q ss_pred hccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCC-CCCCcCcc-ceeecCCc
Q psy9576 87 LKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKN-HPARSMHD-TFYIKNRY 164 (338)
Q Consensus 87 ~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~-hpar~~~d-t~~i~np~ 164 (338)
+...++|.++|....+.|+.||++++.++||++|.+|||+|+++|.++++++|| |.+ ||||+++| ||||++|.
T Consensus 37 ~~~~~~d~~~P~~~~~~G~~HPl~~~~~~ir~~f~~mGF~e~~~p~ies~~~n~-----pq~ghpAr~~~D~tfyl~~p~ 111 (549)
T 2du7_A 37 IKDKHIDNKYPRLKPVYGKPHPVMETIERLRQAYLRMGFEEMINPVIVDEMEIY-----KQFGPEAMAVLDRCFYLAGLP 111 (549)
T ss_dssp SCCCTTTTSSSSSCCCCCCCCHHHHHHHHHHHHHHTTTCEECCCCSCEEHHHHH-----HHTCTTHHHHGGGCCEEECCC
T ss_pred hhccCcCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCeEeehHHhC-----CCcCCCcccccCceEEECCCC
Confidence 677889999999888999999999999999999999999999999999999984 667 99999999 99999862
Q ss_pred c-------------------------------------------------------------------C---------CC
Q psy9576 165 V-------------------------------------------------------------------S---------NN 168 (338)
Q Consensus 165 ~-------------------------------------------------------------------~---------~~ 168 (338)
. + ++
T Consensus 112 ~~~~g~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~v~~~~~~~~s~g~~~~d~~~~e~~~~~~~~e 191 (549)
T 2du7_A 112 RPDVGLGNEKVEIIKNLGIDIDEEKKERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPEST 191 (549)
T ss_dssp CCCCSSSSTTSCCSSCSCCCCSCCCSSSCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCCCSSSSSCTTSSSCCCCEE
T ss_pred CcccccchhhhhhhhhcccccccchhhhhhhhhhhhccCCCchhhhhhHhhhhhhcccccccccccccchhhcccccccc
Confidence 1 0 14
Q ss_pred cceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeCC--CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhcc
Q psy9576 169 KPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRIDS--DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242 (338)
Q Consensus 169 ~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d~--d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg 242 (338)
+++|||||+|+++.+++. +.+|+|+||+|+|||+|. +++|.++|||++|+++|++++|+||||+|+.+++.+ |
T Consensus 192 ~svLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L-G 270 (549)
T 2du7_A 192 TLTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF-G 270 (549)
T ss_dssp EEECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG-T
T ss_pred ccccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence 689999999988888754 367999999999999985 789999999999999999999999999999999998 8
Q ss_pred CCCeeEEEccC------CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHH
Q psy9576 243 SDNIQIRFRPS------YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTML 316 (338)
Q Consensus 243 ~~~~~~r~~ps------~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~ 316 (338)
. ..++|+|+ ||||++ +++++.+ ++ .+||.+||+||||||+|++++||+ .++||||||||||+|+
T Consensus 271 i--~~~rfrps~~~~p~yhPGr~--AeI~v~~--~g-~~gw~eIG~~GeVHP~VLk~~gId---~~v~aFELgLErL~m~ 340 (549)
T 2du7_A 271 F--TKFKFKPDEKKSKYYTPETQ--TEVYAYH--PK-LGEWIEVATFGVYSPIALAKYNID---VPVMNLGLGVERLAMI 340 (549)
T ss_dssp C--CCCCCEECTTCCTTBCTTTC--EEEEECC--SS-SSCSEEEEEEEEBCHHHHHHTTCC---SCEEEEEEBHHHHHHH
T ss_pred C--CeEEEEECCCCCcccCCceE--EEEEEec--CC-CCCcEEEEEEEEECHHHHHHcCCC---CCeEEEEEeHHHHHHH
Confidence 4 35788887 666665 5555533 11 137999999999999999999998 6799999999999999
Q ss_pred HcCCCcccccccCCh-hhhcc
Q psy9576 317 RYGIDDLRLFYKGNI-NFLKQ 336 (338)
Q Consensus 317 ~~~i~diR~~~~~d~-rfl~q 336 (338)
+|+++|||.++.+|+ ||...
T Consensus 341 ~~~i~dIR~~~~~dlsrFPav 361 (549)
T 2du7_A 341 IYGYEDVRAMVYPQFYEYRLS 361 (549)
T ss_dssp HTTCSCSHHHHSSSSSCCCCC
T ss_pred hcCCCcccccccCCcccCCcc
Confidence 999999999999999 88753
|
| >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-50 Score=404.88 Aligned_cols=232 Identities=22% Similarity=0.359 Sum_probs=200.7
Q ss_pred hhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCC-CCCCcCcc-ceeecCC
Q psy9576 86 SLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKN-HPARSMHD-TFYIKNR 163 (338)
Q Consensus 86 ~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~-hpar~~~d-t~~i~np 163 (338)
.+++.++|+++|....+.|+.||++++.++||++|.+|||+|+++|.++++++|| |.+ ||||+++| ||||++|
T Consensus 44 ~~~~~~id~~~P~~~~~~G~~HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~-----pq~gHpAR~~~D~tFyl~~P 118 (648)
T 2odr_B 44 LIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIY-----KQFGPEAMAVLDRCFYLAGL 118 (648)
T ss_dssp ------CTTSGGGCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHH-----HHHGGGHHHHHHTCEEEEBC
T ss_pred hccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEeeCCEEeehhhhC-----CCcCCCccccCCceEEECCC
Confidence 3566789999999888999999999999999999999999999999999999984 667 99999999 9999986
Q ss_pred cc---------------------------------------------------------------------------CCC
Q psy9576 164 YV---------------------------------------------------------------------------SNN 168 (338)
Q Consensus 164 ~~---------------------------------------------------------------------------~~~ 168 (338)
.. ..+
T Consensus 119 ~~~~vg~~~~~~~~i~~~g~~is~~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~~~ 198 (648)
T 2odr_B 119 PRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSS 198 (648)
T ss_dssp CC---------------------------------------------------------------------CCCCCCBCC
T ss_pred CCCccccchhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccccccc
Confidence 30 014
Q ss_pred cceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhcc
Q psy9576 169 KPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242 (338)
Q Consensus 169 ~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg 242 (338)
+++|||||+|+++.+++. +.+|+|+||+|+|||+| . |++|.++|||++|+++|++++|+||||+|+.|++.+ |
T Consensus 199 ~sVLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L-G 277 (648)
T 2odr_B 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF-G 277 (648)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT-T
T ss_pred cCcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence 789999999988777643 46899999999999998 4 789999999999999999999999999999999998 8
Q ss_pred CCCeeEEEccC------CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHH
Q psy9576 243 SDNIQIRFRPS------YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTML 316 (338)
Q Consensus 243 ~~~~~~r~~ps------~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~ 316 (338)
. .+++|+|+ ||||++ +++++.+ ++ .+||.+||+||||||+|++++||+ .++||||||||||+|+
T Consensus 278 i--~~vrfrpse~~~p~yhPGre--AEI~v~~--~g-~~GW~EIG~~GeVHP~VLk~~GId---~~V~AFELgLErLaml 347 (648)
T 2odr_B 278 F--TNFKFIPDEKKSKYYTPETQ--TEVYAYH--PK-LKEWLEVATFGVYSPVALSKYGID---VPVMNLGLGVERLAMI 347 (648)
T ss_dssp C--CCEEEEECTTCCTTBCTTCC--EEEEEEE--TT-TTEEEEEEEEEEBCHHHHHHTTCC---SCEEEEEEEHHHHHHH
T ss_pred C--CeEEEEECCCCCcCcCCceE--EEEEEec--CC-CCCCEEEEEEeEECHHHHHHcCCC---CCEEEEEEeHHHHHHH
Confidence 4 46889887 677776 6666654 11 237999999999999999999998 6789999999999999
Q ss_pred HcCCCcccccccCCh-hh
Q psy9576 317 RYGIDDLRLFYKGNI-NF 333 (338)
Q Consensus 317 ~~~i~diR~~~~~d~-rf 333 (338)
+|+++|||.||.+|+ ||
T Consensus 348 ~~gi~DIR~~~~~diSRF 365 (648)
T 2odr_B 348 SGNFADVREMVYPQFYEH 365 (648)
T ss_dssp HTTCSCHHHHHCGGGSCC
T ss_pred hcCCCcccccccCCcCCC
Confidence 999999999999999 88
|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-50 Score=404.00 Aligned_cols=232 Identities=22% Similarity=0.354 Sum_probs=204.9
Q ss_pred hhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCC-CCCCcCcc-ceeecCC
Q psy9576 86 SLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKN-HPARSMHD-TFYIKNR 163 (338)
Q Consensus 86 ~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~-hpar~~~d-t~~i~np 163 (338)
.+++.++|+++|....+.|+.||++++.++||++|.+|||+|+++|.++++++|| |.+ ||||+++| ||||++|
T Consensus 44 ~~~~~~id~~~P~~~~~~G~~HPl~~~~~~IReif~~mGF~Ev~~p~Vese~~n~-----pq~gHPAR~~~D~tFYL~~P 118 (701)
T 2odr_C 44 LIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIY-----KQFGPEAMAVLDRCFYLAGL 118 (701)
T ss_dssp GSCCCCTTTSSTTCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHH-----HHHGGGHHHHHHTCEEEEEC
T ss_pred hccccccCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhC-----CCcCCCccccCCcEEEECCC
Confidence 4788899999999888999999999999999999999999999999999999984 667 99999999 9999976
Q ss_pred cc------------------------------------------------------------------CC---------C
Q psy9576 164 YV------------------------------------------------------------------SN---------N 168 (338)
Q Consensus 164 ~~------------------------------------------------------------------~~---------~ 168 (338)
.. ++ +
T Consensus 119 ~~~~vg~~~~~~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dlv~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~ 198 (701)
T 2odr_C 119 PRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSS 198 (701)
T ss_dssp CC---------------------------------------------------------------------CCCCCCEEE
T ss_pred CCCccccchhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccc
Confidence 30 01 3
Q ss_pred cceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhcc
Q psy9576 169 KPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242 (338)
Q Consensus 169 ~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg 242 (338)
+++|||||+|+++.+++. +.+|+|+||+|+|||+| . |++|.++|||++++++|++++|+||||+|+.|++.+ |
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L-G 277 (701)
T 2odr_C 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF-G 277 (701)
T ss_dssp EEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT-T
T ss_pred cCcccccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence 689999999988777643 46899999999999998 4 789999999999999999999999999999999998 8
Q ss_pred CCCeeEEEccC------CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHH
Q psy9576 243 SDNIQIRFRPS------YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTML 316 (338)
Q Consensus 243 ~~~~~~r~~ps------~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~ 316 (338)
. .+++|+|+ ||||++ +++++.+ ++ .+||.+||+||||||+|++++||+ .++||||||||||+|+
T Consensus 278 i--~~vrfrpse~~~p~yHPGre--AEI~V~~--~g-~~GW~EIG~~GeVHPeVLk~~GId---~~V~AFELgLErLaml 347 (701)
T 2odr_C 278 F--TNFKFIPDEKKSKYYTPETQ--TEVYAYH--PK-LKEWLEVATFGVYSPVALSKYGID---VPVMNLGLGVERLAMI 347 (701)
T ss_dssp C--CCEEEEECTTCCTTBCTTCC--EEEEEEE--TT-TTEEEEEEEEEEBCHHHHHHTTCC---SCEEEEEEEHHHHHHH
T ss_pred C--CeEEEEECCCCCCCcCCceE--EEEEEec--CC-CCCCEEEEEEeEECHHHHHHcCCC---CCEEEEEEeHHHHHHH
Confidence 4 46889887 677776 6666654 11 237999999999999999999998 6789999999999999
Q ss_pred HcCCCcccccccCCh-hh
Q psy9576 317 RYGIDDLRLFYKGNI-NF 333 (338)
Q Consensus 317 ~~~i~diR~~~~~d~-rf 333 (338)
+|+++|||.||.+|+ ||
T Consensus 348 k~gi~DIR~~~~~dISRF 365 (701)
T 2odr_C 348 SGNFADVREMVYPQFYEH 365 (701)
T ss_dssp HTTCSCHHHHHCGGGSCC
T ss_pred hcCCCcccccccCCcCCC
Confidence 999999999999999 88
|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-49 Score=396.20 Aligned_cols=224 Identities=27% Similarity=0.435 Sum_probs=196.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCC-CCCCcCcc-ceeec----------------
Q psy9576 100 GKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKN-HPARSMHD-TFYIK---------------- 161 (338)
Q Consensus 100 ~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~-hpar~~~d-t~~i~---------------- 161 (338)
..+.|+.||.+++.++||++|.++||+|+.+|+++++++| +|.+ ||||+++| +||+.
T Consensus 40 ~~~~g~~hp~~~~~~~Ir~~l~~lGF~Ev~~~s~~s~~~n-----~p~~~Hpar~~~Dr~fyl~~~~~~~~g~~~~~~e~ 114 (534)
T 2du3_A 40 GFSFGKEHPLFATIQRLREAYLSIGFSEVVNPLIVEDVHV-----KKQFGREALAVLDRCFYLATLPKPNVGISAEKIRQ 114 (534)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHTTCEECCCCCEEETHHH-----HHHHGGGHHHHHTTSCEEEECCCCCTTGGGTTTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEeCceEeChhhc-----ccccccchhhhccceeeccCcccccccccchhhhh
Confidence 4588999999999999999999999999999999999876 4444 89999988 88763
Q ss_pred --------------------------------------------------CCccCCC---------cceEeccchHHHHH
Q psy9576 162 --------------------------------------------------NRYVSNN---------KPLLRTHTSPMQIR 182 (338)
Q Consensus 162 --------------------------------------------------np~~~~~---------~~~LRt~lsp~~l~ 182 (338)
||. +++ +++|||||+|+++.
T Consensus 115 I~~~~G~~l~~~~l~~~~~~y~~~~~~~~~~~~~v~~vh~~fds~~v~l~NPi-s~e~~~~~~~~~~svLRTsLlPgLL~ 193 (534)
T 2du3_A 115 IEAITKREVDSKPLQEIFHRYKKGEIDGDDLSYLIAEVLDVDDITAVKILDEV-FPEFKELKPISSTLTLRSHMTTGWFI 193 (534)
T ss_dssp TSCCCCSSCCCSCTTTTTTHHHHSCCSGGGTTTTTTSSSCSGGGSHHHHHHTT-CTTTTTCCCEEEEEEECSSHHHHHHH
T ss_pred hhhhccccchhhhhhhhhhhhhccccccccccccccchhcccccceeeecCCC-ChhhccccccccccccCccchhhHHH
Confidence 343 566 68999999999999
Q ss_pred HHhc----CCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccC---
Q psy9576 183 YSKI----NKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPS--- 253 (338)
Q Consensus 183 ~l~~----~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps--- 253 (338)
+++. +.+|+|+||+|+|||+| . +++|.++|||++++++|.+++|+|+||+++.+++.+ |. ..++|+|+
T Consensus 194 ~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~L-Gi--~~~r~~~~~~~ 270 (534)
T 2du3_A 194 TLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQF-GF--ENFRFRKDEKR 270 (534)
T ss_dssp HHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGG-TC--CEEEEEECTTC
T ss_pred HHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc-CC--CeEEEEECCCC
Confidence 8864 35799999999999998 4 778999999999999999999999999999999998 85 46888887
Q ss_pred ---CCCCCCCceEEEEEeec--C---CCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHcCCCcccc
Q psy9576 254 ---YFPFTEPSAEIDIVFQD--G---PLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRL 325 (338)
Q Consensus 254 ---~fpf~~Ps~e~~i~~~~--g---~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~~i~diR~ 325 (338)
||||++ ++++++|.+ | +...||+|||+||+|||+||+++|++ ++|||||||||||+|++|||+|||+
T Consensus 271 ~~~yhPgt~--aeI~v~~~~~~g~~~~~~~gW~eIG~~G~vhP~VL~~~gi~---~~v~afeLgLErLaMl~~gi~DIR~ 345 (534)
T 2du3_A 271 SKYYIPDTQ--TEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDIP---YPVMNLGLGVERLAMILYGYDDVRK 345 (534)
T ss_dssp CTTBCTTTC--EEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHTTTCC---SCEEEEEEEHHHHHHHHTTCSCHHH
T ss_pred cccccCCeE--EEEEEEeccccccccccCCCCEEEEEEEEECHHHHHHcCCC---CcEEEEEecHHHHHHhhcCCchhhh
Confidence 788887 778776531 1 10247999999999999999999997 8999999999999999999999999
Q ss_pred cccCCh--hhhccC
Q psy9576 326 FYKGNI--NFLKQF 337 (338)
Q Consensus 326 ~~~~d~--rfl~qf 337 (338)
||++|+ ||++||
T Consensus 346 ~~~~d~~~rfl~qf 359 (534)
T 2du3_A 346 MVYPQIHGEIKLSD 359 (534)
T ss_dssp HHCTTTTTCCCCCH
T ss_pred hhcccccHhHHhhh
Confidence 999999 999998
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=290.78 Aligned_cols=203 Identities=17% Similarity=0.219 Sum_probs=172.6
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHH
Q psy9576 101 KNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180 (338)
Q Consensus 101 ~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~ 180 (338)
.+.|..||.+++.+.||++|.++||+|+.+|.+++. .++++++.+.++|.+. ++++++.. .+|||+++|++
T Consensus 71 ~~~g~~~~~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~-~~~~~~~~~~~~p~~~--~~~~~~~~------~~LR~slsp~L 141 (290)
T 3qtc_A 71 YAEERENYLGKLEREITRFFVDRGFLEIKSPILIPL-EYIERMGIDNDTELSK--QIFRVDKN------FCLRPMLTPNL 141 (290)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHTTCEEECCCSEEET-HHHHHTTCCTTSSGGG--GCCEETTT------EEECSCSHHHH
T ss_pred hccccccHHHHHHHHHHHHHHHCCCEEEECCceeeH-HHHHhcCCCcCCchhh--hheeeCCC------eeEcccChHHH
Confidence 345788999999999999999999999999999887 4799999988887653 45666433 89999999999
Q ss_pred HHHHhc----CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccCCC
Q psy9576 181 IRYSKI----NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYF 255 (338)
Q Consensus 181 l~~l~~----~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~f 255 (338)
++++.. ...|+|+||+|+|||++ .+.+|.+||+|+++.++|.+.+|+++|++++.+++.+ |. .+++. ..
T Consensus 142 ~~~l~~n~~~~~~p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~l-Gl---~~~~~--~~ 215 (290)
T 3qtc_A 142 YNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHL-GI---DFKIV--GD 215 (290)
T ss_dssp HHHHHHHTTTSCSSEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHH-TC---CCEEE--C-
T ss_pred HHHHHHhhccCCCCeEEEEEcCEEecCCCCCcCcchheEEEEEEEcCChHHHHHHHHHHHHHHHc-CC---CcEEe--CC
Confidence 998864 36789999999999998 4678999999999999999999999999999999998 85 34444 45
Q ss_pred CCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHh-hhCCCCCCCeEEEEEeechhHHHHHHcCCCcccccccC
Q psy9576 256 PFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVL-CNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKG 329 (338)
Q Consensus 256 pf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl-~~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~~ 329 (338)
|+.|||..++|.+ +|.+||. |+|||+|+ +++||+ .++||||||+|+|+|++|||+|||+|+..
T Consensus 216 ~~~hpgr~a~i~~-------~~~~iG~-G~lhP~vl~~~~~i~---~~v~~~el~le~l~~~~~~~~dir~~~~~ 279 (290)
T 3qtc_A 216 SCMVFGDTLDVMH-------GDLELSS-ALVGPIPLDREWGID---KPWIGAGFGLERLLKVKHDFKNIKRAARS 279 (290)
T ss_dssp -----CEEEEEEE-------TTEEEEE-EEESCCGGGGGGTCC---SCEEEEEEEHHHHHHHHHTCSSGGGGSSC
T ss_pred CccccCCcccEee-------CCEEEEE-EEecHHHHHHhCCCC---CceEEEEECHHHHHHHHcCCcHHHHHhcc
Confidence 7789999999865 5889987 99999999 899998 67999999999999999999999999853
|
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=316.28 Aligned_cols=207 Identities=16% Similarity=0.202 Sum_probs=185.8
Q ss_pred ccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCC
Q psy9576 88 KTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN 167 (338)
Q Consensus 88 ~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~ 167 (338)
--++||.|+|.. .+.|+.||.+++.+.+|++|+++||+|+.++++++..++|++||+|.+| +++++|.||+ ++
T Consensus 373 GYdnIp~tlP~~-~~~g~~~~~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~-----~~~v~L~NPi-s~ 445 (589)
T 3l4g_B 373 GYNNIQMTLPKT-YTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISA-----TKAVHISNPK-TA 445 (589)
T ss_dssp CGGGSCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTS-----SCCCBBSSCS-SG
T ss_pred CcccCCCcCCCc-cccCCCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCC-----CCeEEEcCCC-ch
Confidence 346899999985 6789999999999999999999999999999999998899999998776 3679999996 89
Q ss_pred CcceEeccchHHHHHHHhcC---CCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccC
Q psy9576 168 NKPLLRTHTSPMQIRYSKIN---KPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 168 ~~~~LRt~lsp~~l~~l~~~---~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~ 243 (338)
++++|||||+|++++++++| .+|+|+||+|+||+++. +.+|.++++|++++++|+.++|+++||+++.+++.+ |.
T Consensus 446 e~svmRtsLlpgLL~~l~~N~~~~~~vrlFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~l-g~ 524 (589)
T 3l4g_B 446 EFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLL-DV 524 (589)
T ss_dssp GGSEECSCSHHHHHHHHHHTTTSCSCEEEEEEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHT-TC
T ss_pred hHhHHHHHHHHHHHHHHHHHhcCCCceEEEEeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHc-CC
Confidence 99999999999999999753 35999999999999984 567889999999999999999999999999999998 86
Q ss_pred CCe-----eEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 244 DNI-----QIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 244 ~~~-----~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
.. .++++++.+|+.|||.+++|++ +|+ .||++|+|||+|++++|++ .++|+|||++|.|
T Consensus 525 -~~~~~~~~~~~~~~~~~~~hPGr~A~I~~-~g~------~iG~~GelHP~v~~~~~l~---~~v~~~El~l~~l 588 (589)
T 3l4g_B 525 -PPGEDKGGYVIKASEGPAFFPGRCAEIFA-RGQ------SVGKLGVLHPDVITKFELT---MPCSSLEINIGPF 588 (589)
T ss_dssp -CBSTTTTSEEEEECCCTTEEEEEEEEEEE-TTE------EEEEEEEECHHHHHHTTCC---SCEEEEEEECGGG
T ss_pred -CccccccceEEeccCCCCccCCCEEEEEE-CCe------EEEEEEEECHHHHHHcCCC---CCeEEEEEEhHHh
Confidence 32 4788999999999999999987 222 8999999999999999998 7899999999975
|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=284.24 Aligned_cols=204 Identities=17% Similarity=0.224 Sum_probs=165.1
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHH
Q psy9576 101 KNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180 (338)
Q Consensus 101 ~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~ 180 (338)
.+.|+.||++++.+.||++|.++||+|+.+|.+++.. .++..+.+++|+ + +.+.+|. +++ .+|||+++|++
T Consensus 65 ~~~g~~h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~-l~~~~g~~~~~~---m---~~~~npl-~e~-~~LRp~l~p~l 135 (288)
T 3dsq_A 65 RTVKHRPALLELEEKLAKALHQQGFVQVVTPTIITKS-ALAKMTIGEDHP---L---FSQVFWL-DGK-KCLRPMLAPNL 135 (288)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHTTTCEECCCCSEEEHH-HHHTTSSCC--C---C---TTTSCEE-ETT-EEECSCSHHHH
T ss_pred hcCCCcCHHHHHHHHHHHHHHHCCCEEEECCeeecHH-HHhhcCCCcccc---c---EEeeccc-ccc-hhhhhcChHHH
Confidence 5568899999999999999999999999999998865 455555544432 2 2233443 333 59999999999
Q ss_pred HHHHhc----CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcC--CCCHHHHHHHHHHHHHHhccCCCeeEEEccC
Q psy9576 181 IRYSKI----NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDK--NISFSDLKGVYLNFIRVFFESDNIQIRFRPS 253 (338)
Q Consensus 181 l~~l~~----~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~--~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps 253 (338)
+++++. ..+|+|+|++|+|||++ .+.+|.++|||++++++|+ .++|+++|++++.+++.+ |. ..+++.+.
T Consensus 136 ~~~~r~~~~~~~~PlrlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~L-Gl--~~~~~~~~ 212 (288)
T 3dsq_A 136 YTLWRELERLWDKPIRIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAA-GI--REFELVTE 212 (288)
T ss_dssp HHHHHHHTTTSCSCEEEEEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHH-TC--CCCEEEEC
T ss_pred HHHHHHHHhCCCCCEEEEEEeeEEecCCCCCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHc-CC--CCcEEecC
Confidence 976532 46799999999999999 5789999999999999997 789999999999999999 95 24555443
Q ss_pred CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHh-hhCCCCCCCeEEEEEeechhHHHHHHcCCCcccccccC
Q psy9576 254 YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVL-CNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKG 329 (338)
Q Consensus 254 ~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl-~~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~~ 329 (338)
.. .+++..+++.+ +|.|||+|| |||+|+ +++||+ .++++||||+|||+|++||++|||+++.+
T Consensus 213 s~--e~~~~~~~l~~-------~~~eig~~G-v~p~vl~~~~gi~---~~~~gfglglerl~m~~~g~~~iR~~~~~ 276 (288)
T 3dsq_A 213 SS--VVYGDTVDVMK-------GDLELASGA-MGPHFLDEKWEIF---DPWVGLGFGLERLLMIREGTQHVQSMARS 276 (288)
T ss_dssp CC--CSSCCCEEEEE-------TTEEEEEEE-EESCTTTTTTTCC---SCEEEEEEEHHHHHHHHHTCSCGGGGSSC
T ss_pred Cc--ceEEEEEEEEe-------CCEEEEEEE-ecHHHHHHhcCCC---CCeEEEEECHHHHHHHHcCCchhhcCCCC
Confidence 22 23455566643 589999999 999999 999998 46889999999999999999999999975
|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=320.37 Aligned_cols=205 Identities=14% Similarity=0.210 Sum_probs=180.4
Q ss_pred ccccCCCCCCC-CCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCcc-ceeecCCcc
Q psy9576 88 KTNKIDITLPG-RGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHD-TFYIKNRYV 165 (338)
Q Consensus 88 ~~~~id~tlp~-~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~d-t~~i~np~~ 165 (338)
--++||.|+|. ...+.|..||.+++.+++|++|+++||+|+.++++++...+ +.|+ |+ ++ +++|.||.
T Consensus 473 GydnIp~tlP~~~~~~~g~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~-~~-------~~~~v~L~NPi- 542 (795)
T 2rhq_B 473 GYDEIPSSLPVFGEVTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHA-KDFA-LQ-------ERPTISLLMPM- 542 (795)
T ss_dssp CTTTSCCCCCCCSSCCCCCCCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTT-TTTC-SS-------CCCCEECSSCS-
T ss_pred CcccCCccCCCccccCCCCCCHHHHHHHHHHHHHHHCCCEEEecCCccCHHHH-HhhC-CC-------CCceEEEcCCC-
Confidence 45789999997 67889999999999999999999999999998888887655 6666 43 24 69999996
Q ss_pred CCCcceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCC-----------CCHHHH
Q psy9576 166 SNNKPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKN-----------ISFSDL 229 (338)
Q Consensus 166 ~~~~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~-----------~~f~dL 229 (338)
++++++|||||+|++++++++ +.+|+|+||+|+||++|. +.+| ++++|++++++|+. ++|+|+
T Consensus 543 s~e~svLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dl 621 (795)
T 2rhq_B 543 SEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIA 621 (795)
T ss_dssp CTTSSEECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHH
T ss_pred chhhhhhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCCCCCCCHHHH
Confidence 789999999999999999965 368999999999999873 3366 89999999999975 899999
Q ss_pred HHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeec
Q psy9576 230 KGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSG 309 (338)
Q Consensus 230 Kg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelg 309 (338)
||+++.+++.+ |. . ++|+|+++||+|||.+++|++ ++. +||+||+|||+|++++|++ ++ |||||+
T Consensus 622 Kg~le~ll~~l-G~-~--~~~~~~~~p~~hPGr~a~I~~-----~g~--~IG~~G~lHP~Vl~~~~l~---~~-~afEL~ 686 (795)
T 2rhq_B 622 KGVVDRVAEKL-NL-E--FSYKAGKIEGLHPGRTAIVSL-----EGQ--DIGFIGELHPQVAADNDLK---RT-YVFELN 686 (795)
T ss_dssp HHHHHHHHHHH-TC-C--CEEEECCCTTEEEEEEEEEEE-----TTE--EEEEEEEECHHHHHHTTCC---SE-EEEEEE
T ss_pred HHHHHHHHHHc-CC-c--EEEEECCCCcccCCcEEEEEE-----CCE--EEEEEEEECHHHHHHcCCC---Cc-EEEEEE
Confidence 99999999999 85 2 688899999999999999998 322 9999999999999999997 88 999999
Q ss_pred hhHHHHHHc
Q psy9576 310 LERLTMLRY 318 (338)
Q Consensus 310 lerlam~~~ 318 (338)
+|+|+|.+.
T Consensus 687 le~L~~~~~ 695 (795)
T 2rhq_B 687 YDAMMQVAV 695 (795)
T ss_dssp HHHHTTCCC
T ss_pred HHHHhhhcc
Confidence 999998654
|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=262.01 Aligned_cols=186 Identities=13% Similarity=0.117 Sum_probs=155.5
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
+..+++.+.||++|+++||+|+.++++++.. .|+.++.+++ .+++.|.||+ ++++++|||||+|++++++++
T Consensus 4 d~~~~~~~~ir~~l~~~G~~Evitysf~~~~-~~~~~~~~~~------~~~v~l~NPl-s~e~~vmRtsLlpgLL~~~~~ 75 (213)
T 3ig2_A 4 DKSNKLQNLVAEQLVGCGFNEILNNSLTRAA-YYDGLESYPS------KNLVMLLNPL-SADLNCMRQTLLFGGLESIAH 75 (213)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEECGG-GGTTCSSSCG------GGCEEBSSGG-GCSCCEECSCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCeEEeccccCCHH-HHHhhcccCc------CCeEEEeCCc-chhHHHHHHHhHHHHHHHHHH
Confidence 4567899999999999999999999998864 6888876543 2568999996 899999999999999999975
Q ss_pred C----CCCceEEEeeeEEEeCC-CC------CCCcceeEEEEEEEc-----------CCCCHHHHHHHHHHHHHHhccCC
Q psy9576 187 N----KPPIKVITSGRVYRIDS-DS------THSPMFHQIEGLWID-----------KNISFSDLKGVYLNFIRVFFESD 244 (338)
Q Consensus 187 ~----~~pirifeiG~Vyr~d~-d~------th~~~f~ql~~l~~g-----------~~~~f~dLKg~l~~ll~~lfg~~ 244 (338)
| .+++|+||+|+||+++. +. ++..+.++++++++| +.++|+|+||+|+.++..+ |.
T Consensus 76 N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~l-g~- 153 (213)
T 3ig2_A 76 NANRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRL-GL- 153 (213)
T ss_dssp C------CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHT-TB-
T ss_pred HhcCCCCCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHh-CC-
Confidence 3 56899999999999974 21 223466899999999 4589999999999999998 85
Q ss_pred Ce-eEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 245 NI-QIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 245 ~~-~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
.. .++++++.+|+.|||.+++ ++ +| .+||++|+|||+|++++||+ .++|+|||++|.|
T Consensus 154 ~~~~~~~~~~~~~~~hPgr~a~-~~-~g------~~iG~~G~lhP~v~~~~~l~---~~v~~~Eldl~~l 212 (213)
T 3ig2_A 154 DLHSLVVGNLSDDIYSTALTVN-TK-GG------KRLATFGVVTKKMLKAFDVD---NEVYYADLNWKEL 212 (213)
T ss_dssp CGGGCEEEEECSSSEEEEEEEE-CT-TC------CEEEEEEEECHHHHHHTTCC---EEEEEEEEETGGG
T ss_pred CccceEEeeccCCCCCCCeEEE-eE-CC------cEEEEEeEECHHHHHHcCcC---CCeEEEEEEhHHh
Confidence 21 3789999999999999887 55 22 28999999999999999998 7999999999975
|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-34 Score=256.49 Aligned_cols=186 Identities=10% Similarity=0.088 Sum_probs=156.1
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
++.+++.+.||++|+++||+|+.++++++. ..++.++.+++ .+++.|.||+ ++++++||||++|++++++++
T Consensus 4 d~~~~~~~~ir~~L~~~G~~Evitysf~s~-~~~~~~~~~~~------~~~v~l~NPl-s~e~~vmRtsLlpgLL~~~~~ 75 (213)
T 3ica_A 4 DRRYKWQTVVSEQLVGAGFNEILNNSLTAG-SYYEGLKSHPR------EMAVELMNPL-SQELNCMRQTLLFGGLETLSH 75 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCCCSEEEG-GGGTTCSSSCG------GGCCBCSSBS-CSSEEEECSSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCceeeeccCCCH-HHHhhhcccCc------CCeEEecCCc-cHHHHHHHHHhHHHHHHHHHH
Confidence 346789999999999999999999999886 47888876533 2458899996 899999999999999999964
Q ss_pred ----CCCCceEEEeeeEEEeCC-CC------CCCcceeEEEEEEEcC-----------CCCHHHHHHHHHHHHHHhccCC
Q psy9576 187 ----NKPPIKVITSGRVYRIDS-DS------THSPMFHQIEGLWIDK-----------NISFSDLKGVYLNFIRVFFESD 244 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d~-d~------th~~~f~ql~~l~~g~-----------~~~f~dLKg~l~~ll~~lfg~~ 244 (338)
+.+++|+||+|+||+++. +. ++..+.++++++++|. .++|+|+||+|+.++..+ |.
T Consensus 76 N~~r~~~~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l-gi- 153 (213)
T 3ica_A 76 NLRRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV-GI- 153 (213)
T ss_dssp HHTTTCSEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT-TC-
T ss_pred HHcCCCCCeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh-CC-
Confidence 346799999999999873 21 1234668999999983 589999999999999998 85
Q ss_pred Ce-eEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 245 NI-QIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 245 ~~-~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
.. .++++++.+|+.|||.+++ .+ +|+ +||++|+|||+|++++||+ .++|+|||++|.|
T Consensus 154 ~~~~~~~~~~~~~~~hpgr~a~-~~-~g~------~iG~~G~lhP~v~~~~~l~---~~v~~~Eldl~~l 212 (213)
T 3ica_A 154 ETGAYTLKTADNDLYASAMEVK-TR-SGK------LLGTFGTVSTELIKRFEIE---QPVYFAELLWDAL 212 (213)
T ss_dssp CGGGEEEEECCCTTEEEEEEEE-ET-TCC------EEEEEEEECHHHHHHTTCC---SCEEEEEEEHHHH
T ss_pred CccceEEeeccCCCCCCCeEEE-eE-CCc------EEEEEeEECHHHHHHcCCC---CCeEEEEEEhHHh
Confidence 21 3789999999999999887 55 222 8999999999999999998 6899999999986
|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=294.09 Aligned_cols=193 Identities=21% Similarity=0.325 Sum_probs=168.1
Q ss_pred ccccCCCCCCCC---CCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCc
Q psy9576 88 KTNKIDITLPGR---GKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRY 164 (338)
Q Consensus 88 ~~~~id~tlp~~---~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~ 164 (338)
--++|+.|+|.. ..+. ..||.+++.+.+|++|+++||+|+.++++++.... +.+ |.+ +++++|.||+
T Consensus 468 GydnIp~~~p~~~~~~~~~-~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l--~~~------~~~v~L~NPi 537 (785)
T 1b7y_B 468 GYETIPLALPAFFPAPDNR-GVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDA-RRF--RLD------PPRLLLLNPL 537 (785)
T ss_dssp CGGGSCCCCCCCCCCGGGS-STTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHH-HHT--TCC------CCSCEESSCS
T ss_pred CcccCCccCCCcccccccc-cCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHH-Hhc--CCC------CCeEEEcCCC
Confidence 346789999976 4466 89999999999999999999999988888777554 555 322 3679999996
Q ss_pred cCCCcceEeccchHHHHHHHhc----C-CCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEcCC----------CCHHHH
Q psy9576 165 VSNNKPLLRTHTSPMQIRYSKI----N-KPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKN----------ISFSDL 229 (338)
Q Consensus 165 ~~~~~~~LRt~lsp~~l~~l~~----~-~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g~~----------~~f~dL 229 (338)
++++++|||||+|++++++++ + .+|+|+||+|+||+ + ++++|++++++|+. ++|+|+
T Consensus 538 -s~d~svLRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~-~------~e~~~lagl~~G~~~~~~w~~~~~vdf~dl 609 (785)
T 1b7y_B 538 -APEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR-E------REETHLAGLLFGEGVGLPWAKERLSGYFLL 609 (785)
T ss_dssp -STTSSEECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEES-S------SEEEEEEEEEESSCBSCSSSSCCBCSHHHH
T ss_pred -chhhhhhhhhhHHHHHHHHHHHhhcCCCCCeEEEEEeeeec-c------ChhhEEEEEEECCCcccccCccCCcCHHHH
Confidence 899999999999999999965 3 58999999999998 2 78899999999986 899999
Q ss_pred HHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeec
Q psy9576 230 KGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSG 309 (338)
Q Consensus 230 Kg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelg 309 (338)
||+++.+++.+ |. +++|+|+++||+|||.+++|+| ++. +||++|+|||+|++++|++ ++|||||+
T Consensus 610 Kg~le~ll~~l-gi---~~~~~~~~~p~~hPGr~a~I~~-----~g~--~iG~~G~lHP~Vl~~~~l~----~v~afEl~ 674 (785)
T 1b7y_B 610 KGYLEALFARL-GL---AFRVEAQAFPFLHPGVSGRVLV-----EGE--EVGFLGALHPEIAQELELP----PVHLFELR 674 (785)
T ss_dssp HHHHHHHHHHH-TC---CCEEECCCCTTEEEEEEEEEEE-----TTE--EEEEEEEECHHHHHHTTCC----CCEEEEEE
T ss_pred HHHHHHHHHHc-CC---ceEEeecCCCcccCceEEEEEE-----CCE--EEEEEEEECHHHHHHCCCC----cEEEEEEE
Confidence 99999999999 84 5788899999999999999998 322 8999999999999999995 68999999
Q ss_pred hhHHH
Q psy9576 310 LERLT 314 (338)
Q Consensus 310 lerla 314 (338)
+| |+
T Consensus 675 Ld-L~ 678 (785)
T 1b7y_B 675 LP-LP 678 (785)
T ss_dssp ES-CC
T ss_pred ee-hh
Confidence 99 75
|
| >3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-29 Score=263.54 Aligned_cols=206 Identities=15% Similarity=0.170 Sum_probs=170.1
Q ss_pred ccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCC
Q psy9576 88 KTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN 167 (338)
Q Consensus 88 ~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~ 167 (338)
--++|+.++|......|...+.+.+.+.+|+.|+++||+|+.++++++.. .++.++ |. .+.+.|.||+ ++
T Consensus 470 GydnIp~~~p~~~~~~~~~~~~~~~~~~~r~~l~~~G~~Evitysf~~~~-~~~~~~-~~-------~~~v~l~NPi-s~ 539 (795)
T 3pco_B 470 GYNNIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQEVITYSFVDPK-VQQMIH-PG-------VEALLLPSPI-SV 539 (795)
T ss_dssp CGGGSCCCCCEEECCCCCCCTTBCCHHHHHHHHHHTTCEECCCCSEECHH-HHHHHS-SS-------CCCCBCSSCS-CS
T ss_pred CcccCCccCCCccccCCCCCHHHHHHHHHHHHHHHCCCeeeeccCcCCHH-HHHhhC-CC-------CCeEEEcCCC-ch
Confidence 34678999998666666666667789999999999999999999998865 345554 32 1457899996 89
Q ss_pred CcceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcC-----------CCCHHHHHH
Q psy9576 168 NKPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDK-----------NISFSDLKG 231 (338)
Q Consensus 168 ~~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~-----------~~~f~dLKg 231 (338)
++++||||++|++++++++ +.+++++||+|+||+++. ..++..+..+++++++|. .++|+|+||
T Consensus 540 e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg 619 (795)
T 3pco_B 540 EMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKG 619 (795)
T ss_dssp TTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEEEEEEEECTTSSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEeeeEEecCCCcccCcchhheEEEEEECCCcccccccCCCCCCHHHHHH
Confidence 9999999999999999964 356899999999999874 234555668999999983 479999999
Q ss_pred HHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechh
Q psy9576 232 VYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLE 311 (338)
Q Consensus 232 ~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelgle 311 (338)
+++.++..+ |. ...++|+++.+|+.|||.+++|++ +|+ .||.+|+|||+|++++|++ .++|+|||++|
T Consensus 620 ~ve~ll~~l-g~-~~~~~~~~~~~~~~hPGrsA~I~~-~g~------~iG~~GelHP~v~~~~dl~---~~v~~~Eldld 687 (795)
T 3pco_B 620 DLESVLDLT-GK-LNEVEFRAEANPALHPGQSAAIYL-KGE------RIGFVGVVHPELERKLDLN---GRTLVFELEWN 687 (795)
T ss_dssp HHHHHTTTS-SC-CSSCCEECCCCTTEEEEEEEEECT-TTS------CCEEEEEECTTTTTTTCCC---SCEEEEEEEGG
T ss_pred HHHHHHHHc-CC-CcceEEEECCCCCCCCCCEEEEEE-CCE------EEEEEEEECHHHHHHcCCC---CCEEEEEEEHH
Confidence 999999988 83 135678888899999999999976 332 7888899999999999997 78999999999
Q ss_pred HHHH
Q psy9576 312 RLTM 315 (338)
Q Consensus 312 rlam 315 (338)
+|..
T Consensus 688 ~L~~ 691 (795)
T 3pco_B 688 KLAD 691 (795)
T ss_dssp GSSB
T ss_pred Hhhc
Confidence 9865
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-23 Score=195.37 Aligned_cols=200 Identities=17% Similarity=0.171 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCC-CCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHP-ARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hp-ar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
-.+.+.+.||++|.++||.||.+|.+++.. + |.+|| +....+.|.+.-. + ....||+ ||.+...+.-
T Consensus 17 ~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~---~----~~~~~~~~e~a~~f~~~~~--~-~~~~L~~--Spe~~~~~l~ 84 (294)
T 1nnh_A 17 IQTKILEYMTDFFVKEGFKWLLPVIISPIT---D----PLWPDPAGEGMEPAEVEIY--G-VKMRLTH--SMILHKQLAI 84 (294)
T ss_dssp HHHHHHHHHHHHHHHTTCEEECCCCEESCC---C----CCCSCTTCCCCCCCEEEET--T-EEEEECS--CSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCEEEEcc---c----hhccCCCCCcceeEEEEcC--C-CCEEecc--ChHHHHHHHh
Confidence 346889999999999999999999998862 2 45676 3222233443211 1 1257775 5655433322
Q ss_pred CCCCceEEEeeeEEEeCC---C-CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccC-C-----Cee-E-------
Q psy9576 187 NKPPIKVITSGRVYRIDS---D-STHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFES-D-----NIQ-I------- 248 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d~---d-~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~-~-----~~~-~------- 248 (338)
...+.|+|++|+|||++. + .+|.|||||+++.+++. ++.++.++++.+++.+++. . ..+ +
T Consensus 85 ~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~--~~~~l~~~~e~l~~~l~~~~~~~~~~~i~~~~~~~r~~ 162 (294)
T 1nnh_A 85 AMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERA--KMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFE 162 (294)
T ss_dssp HTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETC--CHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCSSCEEEE
T ss_pred hcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCC--CHHHHHHHHHHHHHHHHHHHHhhhccccccCCCceEeE
Confidence 234789999999999996 4 59999999999999986 5999999999999988531 0 001 0
Q ss_pred -----------------EEccCC-----CCCCCCc-----eEEEEEeecCCCCCCCeeEeeeee--cCHHHh----hhCC
Q psy9576 249 -----------------RFRPSY-----FPFTEPS-----AEIDIVFQDGPLKGNWLEISGAGQ--VNPKVL----CNMN 295 (338)
Q Consensus 249 -----------------r~~ps~-----fpf~~Ps-----~e~~i~~~~g~~~~gwieig~~G~--vhP~Vl----~~~g 295 (338)
..+|.+ +||+.|+ ...|++| ..||.||+++|+ .+|+++ +..|
T Consensus 163 y~ea~~~~g~~~er~~~~~~P~~v~~~P~pf~~~~d~~~~~~~Dl~~-----~~g~~Ei~~g~~r~~d~~~l~~~~~~~g 237 (294)
T 1nnh_A 163 YSEVLEEFGSDEKASQEMEEPFWIINIPREFYDREVDGFWRNYDLIL-----PYGYGEVASGGEREWEYEKIVAKIRKAG 237 (294)
T ss_dssp HHHHHHHTSSHHHHHHHCSSCEEEECCCCCTTBCEETTEECEEEEEE-----TTTTEEEEEEEEBCCCHHHHHHHHHHTT
T ss_pred HHHHHHHhCChHhhhhhcCCCEEEEcCChHHhCCCCCCeEEEEEEEE-----CCCcEEEecCeeecCCHHHHHHHHHHcC
Confidence 124555 8999987 7889988 446889999998 999985 5566
Q ss_pred CCCCCe-------------EEEEEeechhHHHHHHcCCCccccc
Q psy9576 296 LDPEKY-------------IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 296 i~~~~~-------------~~~afelglerlam~~~~i~diR~~ 326 (338)
++++.| |...||||+|||+|+.+|++|||+.
T Consensus 238 ~~~~~~~~~l~~l~~G~p~P~~G~glGieRL~mll~g~~~Irdv 281 (294)
T 1nnh_A 238 LNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEV 281 (294)
T ss_dssp CCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGG
T ss_pred CCccCHHHHHHHHhcCCCCCceEEEEcHHHHHHHHhCCCCHHHE
Confidence 543322 5677999999999999999999985
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=157.79 Aligned_cols=115 Identities=12% Similarity=0.047 Sum_probs=90.1
Q ss_pred CCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHH-
Q psy9576 105 GLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRY- 183 (338)
Q Consensus 105 ~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~- 183 (338)
..+..+.+.+.||++|.+.||.|+.+|.+++. ..|+++++.++.+...+ ..||+| |.+...
T Consensus 134 ~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~----------~~e~~~~~f~~~~~~~~------~~Lr~S--pel~~~~ 195 (434)
T 1x54_A 134 IMKVKETLIMAAREWLLKDGWHEVFPPILVTG----------AVEGGATLFKLKYFDKY------AYLSQS--AQLYLEA 195 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESC----------CSSCGGGCCEEEETTEE------EEECSC--SHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCcEEEee----------cCCCCceeEEEeecCCc------EEeccC--hHHHHHH
Confidence 34667789999999999999999999999864 35778877555554433 689944 555432
Q ss_pred HhcCCCCceEEEeeeEEEeC-CCC-CCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 184 SKINKPPIKVITSGRVYRID-SDS-THSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 184 l~~~~~pirifeiG~Vyr~d-~d~-th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
|.. .+.|+|++|+|||++ .+. +|.|||+|+++.+++. ++.++..+++.+++.++
T Consensus 196 ~~~--g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~--~~~dlm~~~e~ll~~l~ 251 (434)
T 1x54_A 196 AIF--GLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWM--DLWDIMKVEEELVSYMV 251 (434)
T ss_dssp HHH--HHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETC--CHHHHHHHHHHHHHHHH
T ss_pred Hhc--CccceEEEecceecCCCCCcccccEEEEeeEEEcCC--CHHHHHHHHHHHHHHHH
Confidence 332 267999999999999 454 7999999999999985 68999999998887764
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=129.45 Aligned_cols=114 Identities=13% Similarity=0.172 Sum_probs=86.0
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
+..+++.+.+|++|.+.||.|+.+|.+++. ..++++++-.+.+...+ ..||+|.--.+ +.|..
T Consensus 135 ~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~----------~~e~~~~~f~~~~~~~~------~~L~~Spql~~-~~~~~ 197 (429)
T 1wyd_A 135 KIQSLALKAFRETLYKEGFIEIFTPKIIAS----------ATEGGAQLFPVIYFGKE------AFLAQSPQLYK-ELMAG 197 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCCCSEESS----------CSSTTCCCCEEEETTEE------EEECSCCHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEECCEEEee----------CCCCCceeEEEecCCce------EEecCCcHHHH-HHHHh
Confidence 456788999999999999999999999864 34666766444343322 57876533332 33443
Q ss_pred CCCCceEEEeeeEEEeC-CCC-CCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 187 NKPPIKVITSGRVYRID-SDS-THSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d~-th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
+ +.|+|++|+|||++ .+. +|.|||+|+++.+++. ++.++..+++.+++.++
T Consensus 198 g--~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~--~~~dlm~~~e~ll~~l~ 250 (429)
T 1wyd_A 198 V--VERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFA--DYNDVMQLLEKILHNIV 250 (429)
T ss_dssp H--HSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETC--CHHHHHHHHHHHHHHHH
T ss_pred C--cCceEEEcccccccCCccccccceeeEeeeeecCC--CHHHHHHHHHHHHHHHH
Confidence 2 57999999999999 454 8999999999999985 58999998888887664
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.4e-12 Score=123.06 Aligned_cols=115 Identities=10% Similarity=0.078 Sum_probs=58.4
Q ss_pred CChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH-HHH
Q psy9576 106 LHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI-RYS 184 (338)
Q Consensus 106 ~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l-~~l 184 (338)
.+..+.+.+.+|++|.+.||.|+.+|.+++. ..|+++++ |.+... + ....||+| |.+. +.+
T Consensus 125 ~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~----------~~e~~~~~---f~~~~~--g-~~~~L~~S--pel~~~~l 186 (422)
T 1n9w_A 125 LKVQAALVRGFRRYLDRQDFTEIFTPKVVRA----------GAEGGSGL---FGVDYF--E-KRAYLAQS--PQLYKQIM 186 (422)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCC----------------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCEEEEe----------CCCCCcee---EEEeeC--C-CcEEeeeC--HHHHHHHH
Confidence 4667889999999999999999999999764 24666654 333221 1 12577755 4332 333
Q ss_pred hcCCCCceEEEeeeEEEeC-CCC-CCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 185 KINKPPIKVITSGRVYRID-SDS-THSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 185 ~~~~~pirifeiG~Vyr~d-~d~-th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
.. . ..|+|++|+|||++ .+. +|.|||+|+++.+++.+ ++.++..+++.+++.++
T Consensus 187 ~~-g-~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~-d~~dlm~l~e~ll~~l~ 242 (422)
T 1n9w_A 187 VG-V-FERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIA-DEEDLMRLEEALLAEML 242 (422)
T ss_dssp HH-H-HSEEEEEEEC-------------CCEEEEEEEESCS-SHHHHHHHHHHHHHHHH
T ss_pred hh-C-CCceeEEeCceECCCCCCCcccceeEEeeeeeeCCC-CHHHHHHHHHHHHHHHH
Confidence 32 2 46999999999999 454 79999999999999841 46777777776665553
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-10 Score=109.73 Aligned_cols=115 Identities=15% Similarity=0.108 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeec--CCcc-CCCcceEeccchHHHH--HH
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIK--NRYV-SNNKPLLRTHTSPMQI--RY 183 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~--np~~-~~~~~~LRt~lsp~~l--~~ 183 (338)
..++...||++|.+.||.||.+|.++.... ..- + ...|.+. .|.. ......||+| |.+. +.
T Consensus 39 Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~--------~~a--~--~~~F~~~~~~~~~~~~~~~yL~~S--pql~~k~l 104 (345)
T 3a5y_A 39 RAAIMAEIRRFFADRGVLEVETPCMSQATV--------TDI--H--LVPFETRFVGPGHSQGMNLWLMTS--PEYHMKRL 104 (345)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCC--------CCT--T--CCCCEEEECCSTTSCCEEEEECSC--SHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEecCC--------CCC--c--cceEEEEecCcccccCCCEeecCC--HHHHHHHH
Confidence 357889999999999999999999985421 100 0 0112221 1100 0011456655 5443 34
Q ss_pred HhcCCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 184 SKINKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 184 l~~~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
|...- -|+|++|+|||++ .+++|.|||+|+++-.++ +++.++...++.+++.++
T Consensus 105 ~~~g~--~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af--~d~~d~m~~~E~li~~v~ 159 (345)
T 3a5y_A 105 LVAGC--GPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPH--YDMYRLMNEVDDLLQQVL 159 (345)
T ss_dssp HHTTC--CSEEEEEEEECCCCCBTTBCSEEEEEEEEEET--CCHHHHHHHHHHHHHHHH
T ss_pred HHcCC--CcEEEEEcceeCCCCcccccchhheeeeeeeC--CCHHHHHHHHHHHHHHHH
Confidence 44443 3999999999999 589999999999999987 467788777777776654
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4e-10 Score=113.04 Aligned_cols=112 Identities=20% Similarity=0.215 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH--HHHhcC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI--RYSKIN 187 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l--~~l~~~ 187 (338)
+.+...||++|.+.||.||.+|.+++. |...-++ .|.+..... .....||+| |.+. +.|..
T Consensus 178 s~i~~~iR~ff~~~gF~EVeTPiL~~~---------~~Ga~a~----~F~~~~~~~-~~~~yLr~S--pqLylk~l~v~- 240 (493)
T 3a74_A 178 SLIIQSMRRYLDSHGYLEVETPMMHAV---------AGGAAAR----PFITHHNAL-DMTLYMRIA--IELHLKRLIVG- 240 (493)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESS---------CCSSSSC----CCEEEETTT-TEEEEECSC--SHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhCCeEEEECCeEEec---------CCCCccc----ceEecccCC-CceeEEecC--HHHHHHHHhhc-
Confidence 356788999999999999999999864 1111111 233221111 122578855 5443 22332
Q ss_pred CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 188 KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
..-|+|++|+|||++ .+.+|.|||+|+++.+++ +++.|+..+++.+++.++
T Consensus 241 -G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af--~d~~dlm~l~E~ll~~l~ 292 (493)
T 3a74_A 241 -GLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAY--ADFRDIMKLTENLIAHIA 292 (493)
T ss_dssp -TCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEET--CCHHHHHHHHHHHHHHHH
T ss_pred -ccCceEEECccccCCCCCcccCCceeEEEEEecC--CCHHHHHHHHHHHHHHHH
Confidence 235999999999999 578999999999999988 467888888777776653
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4.6e-10 Score=112.87 Aligned_cols=111 Identities=21% Similarity=0.288 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH--HHHhcC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI--RYSKIN 187 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l--~~l~~~ 187 (338)
.++...||++|.+.||.||.+|.+++. |...-++ .|.+..... .....||+| |.+. +.|...
T Consensus 187 s~i~~~iR~f~~~~gFlEVeTPiL~~~---------~~Ga~ar----~F~t~~~~~-~~~~yL~~S--pqLylk~L~v~G 250 (504)
T 1e1o_A 187 SKILAAIRQFMVARGFMEVETPMMQVI---------PGGASAR----PFITHHNAL-DLDMYLRIA--PELYLKRLVVGG 250 (504)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEESS---------CCSSCCC----CCEEEETTT-TEEEEECSC--SHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEec---------CCCCccc----ceEeccCCC-CceEEeccC--HHHHHHHHhhcC
Confidence 356788999999999999999999764 2111112 132211111 122578865 4443 233333
Q ss_pred CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 188 KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
- -|+|++|+|||++ .+.+|.|||+|+++.+++ +++.|+..+++.+++.+
T Consensus 251 ~--~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af--~d~~dlm~l~E~li~~~ 300 (504)
T 1e1o_A 251 F--ERVFEINRNFRNEGISVRHNPEFTMMELYMAY--ADYHDLIELTESLFRTL 300 (504)
T ss_dssp C--CEEEEEEEEECCCCCCC-CCSEEEEEEEEEES--CCHHHHHHHHHHHHHHH
T ss_pred C--CcEEEEcccccCCCCCccccCceeeeeeeecC--CCHHHHHHHHHHHHHHH
Confidence 2 4999999999999 588999999999999987 46778877777777655
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-09 Score=107.95 Aligned_cols=112 Identities=19% Similarity=0.241 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH--HHhcC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR--YSKIN 187 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~--~l~~~ 187 (338)
.++...||++|.+.||.||.||.++... |+. || + |.+.......++..||+ ||.+.. .|..+
T Consensus 148 s~i~~~iR~fl~~~gF~EVeTPiL~~s~--------~eG--Ar---~-F~v~~~~~~~~~y~L~q--SPQl~kq~Lmv~G 211 (580)
T 1l0w_A 148 HRVIKAIWDFLDREGFVQVETPFLTKST--------PEG--AR---D-FLVPYRHEPGLFYALPQ--SPQLFKQMLMVAG 211 (580)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSSBCCC--------SSS--SC---C-CEEECTTSTTEEEECCS--CSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCcEEEeCCEEecCC--------CCC--CC---C-ccccccccCCceeECcc--CHHHHHHHHHHhc
Confidence 4678899999999999999999997431 111 22 1 32211100112234765 466643 34444
Q ss_pred CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 188 KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
-. |+|++|+|||.+ .+++|.|||+|+++-++. +++.|+..+++.+++.++
T Consensus 212 ~~--rvfqI~~~FR~E~~~~~r~pEFT~lE~e~af--~d~~dvm~~~E~li~~i~ 262 (580)
T 1l0w_A 212 LD--RYFQIARCFRDEDLRADRQPDFTQLDLEMSF--VEVEDVLELNERLMAHVF 262 (580)
T ss_dssp CS--EEEEEEEEECCCCCCSSCCSEEEEEEEEEES--CCHHHHHHHHHHHHHHHH
T ss_pred cC--CeEEEeceeeCCCCCCCcCCCccceeeeecC--CCHHHHHHHHHHHHHHHH
Confidence 33 999999999999 588999999999999987 457777777776665553
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-09 Score=110.56 Aligned_cols=113 Identities=17% Similarity=0.192 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCCCC
Q psy9576 111 RTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINKPP 190 (338)
Q Consensus 111 ~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~~p 190 (338)
++...||++|.+.||.||.+|.+++.. ....|+. |.+..... .....||+|.--.+-+.|...-
T Consensus 181 ~i~~~iR~f~~~~gF~EVeTPiL~~~~---------gGa~a~~----F~t~~~~~-~~~~yL~~SpqL~lk~liv~g~-- 244 (521)
T 3bju_A 181 KIITYIRSFLDELGFLEIETPMMNIIP---------GGAVAKP----FITYHNEL-DMNLYMRIAPELYHKMLVVGGI-- 244 (521)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC---------CSSSCCC----CEEEETTT-TEEEEECSCSHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHCCCEEEeCceeeccC---------CCccccc----eeeecccC-CcceEeeCCHHHHHHHHHhcCc--
Confidence 467789999999999999999997642 1111221 32211111 1125788663332223444433
Q ss_pred ceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 191 IKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 191 irifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
-|+|++|+|||++ .+.+|.|||+|+++.++. .++.|+..+++.+++.++
T Consensus 245 ~rVyeig~~FR~E~~~trH~pEFtmlE~e~af--~d~~dlm~l~E~li~~v~ 294 (521)
T 3bju_A 245 DRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAY--ADYHDLMEITEKMVSGMV 294 (521)
T ss_dssp CEEEEEEEEECCSCCBTTBCSEEEEEEEEEET--CCHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcceeCCCCCCccchhhhhhhhhhhc--CCHHHHHHHHHHHHHHHH
Confidence 3999999999999 578999999999999987 468888888888876653
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.6e-09 Score=104.67 Aligned_cols=109 Identities=13% Similarity=0.155 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH--HHhcC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR--YSKIN 187 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~--~l~~~ 187 (338)
..+...+|++|.+.||.||.+|.+++.. ++ .+.+ .|.+.-. + ....||+| |.+.. .|...
T Consensus 141 s~i~~~iR~f~~~~gF~EVeTPiL~~~~--------~e--g~~~---~f~~~~~--~-~~~yL~~S--pql~~q~l~~~g 202 (438)
T 3nem_A 141 SSVFKAVRDFFHENGFIEIHTPKIIATA--------TE--GGTE---LFPMKYF--E-EDAFLAQS--PQLYKQIMMASG 202 (438)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSC--------SS--CSSS---CCEEEET--T-EEEEECSC--SHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHCCcEEEeCCEEecCC--------CC--CCcc---ceeEeeC--C-ccEEEecC--hHHHHHHHHhcC
Confidence 4778899999999999999999997641 11 1222 2332211 0 11467655 55532 22232
Q ss_pred CCCceEEEeeeEEEeC-CC-CCCCcceeEEEEEEEcCCCC-HHHHHHHHHHHHHHh
Q psy9576 188 KPPIKVITSGRVYRID-SD-STHSPMFHQIEGLWIDKNIS-FSDLKGVYLNFIRVF 240 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~d-~th~~~f~ql~~l~~g~~~~-f~dLKg~l~~ll~~l 240 (338)
--|+|++|+|||.+ .+ ..|.|||+|+++.+++ ++ +.|+...++.+++.+
T Consensus 203 --~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~--~~~~~d~m~~~E~li~~~ 254 (438)
T 3nem_A 203 --LDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAF--IEDEEEVMSFLERLVAHA 254 (438)
T ss_dssp --CCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEES--CSSHHHHHHHHHHHHHHH
T ss_pred --CCceEEEcceEECCCCCCcccccceeeeeeeecc--CccHHHHHHHHHHHHHHH
Confidence 34999999999999 44 4799999999999887 34 677777777666544
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.9e-09 Score=107.62 Aligned_cols=89 Identities=16% Similarity=0.115 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceee---cCCccCCCcceEeccchHHHH--HH
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYI---KNRYVSNNKPLLRTHTSPMQI--RY 183 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i---~np~~~~~~~~LRt~lsp~~l--~~ 183 (338)
...+...||++|...||.||.+|.+++..- + --++ .|.+ ..+ ..||+| |.+. +.
T Consensus 247 Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~--e-------gga~----~F~v~~~~~~------~yL~~S--pql~~k~l 305 (548)
T 3i7f_A 247 QSACCGLFREFLTSQKFVEIHTPKLIGCSS--E-------GGSN----IFEVKYFDRK------AYLAQS--PQLYKQMA 305 (548)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSBC--------------------------------------CCBCSC--THHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEecccC--C-------CCcc----eeEEecCCCc------eEeccC--HHHHHHHH
Confidence 357788889999999999999999976421 1 0011 1221 222 466655 5554 44
Q ss_pred HhcCCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEE
Q psy9576 184 SKINKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWI 220 (338)
Q Consensus 184 l~~~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~ 220 (338)
|...- -|+|++|+|||++ . +.+|+|||+|+++.+.
T Consensus 306 l~~g~--~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~a 342 (548)
T 3i7f_A 306 IMGDF--RKVFEVGPVFRAENSNTRRHLTEFEGLDIEME 342 (548)
T ss_dssp HTTTC--CEEEEEEEECCCSCCCSSSCCSCEEEEEEEEE
T ss_pred HhcCc--CcEEEEeeeEecCCCCCCCcchhhhchhhhhh
Confidence 54433 4999999999999 4 4799999999998765
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=7.7e-09 Score=102.31 Aligned_cols=111 Identities=13% Similarity=0.143 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
..++...||++|.+.||.||.+|.++... ++.+ . +.|.++-. .....||.|.--.+-..|. .
T Consensus 135 Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~--------~eG~--~---~~F~~~~~---g~~~~L~~SpqLylq~l~~-g- 196 (435)
T 2xgt_A 135 RAAATRAMREHFYNAGYVEVAPPTLVQTQ--------VEGG--S---TLFNLDYF---GEQSFLTQSSQLYLETCIP-T- 196 (435)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESCC--------SSCT--T---SCCEEEET---TEEEEECSCSHHHHHHHHH-H-
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEeecc--------CCCc--h---hceeeccC---CcccccCCChHHHHHHhhh-c-
Confidence 35788999999999999999999986431 1111 1 12433211 1114677663222222332 2
Q ss_pred CCceEEEeeeEEEeCC-C-CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 189 PPIKVITSGRVYRIDS-D-STHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 189 ~pirifeiG~Vyr~d~-d-~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
--|+|++|+|||++. + .+|.|||+|+++.+++ +++.|+...++.+++.+
T Consensus 197 -~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af--~d~~d~m~~~E~li~~~ 247 (435)
T 2xgt_A 197 -LGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPF--ITLDDLMEKIEELVCDT 247 (435)
T ss_dssp -HCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEES--CCHHHHHHHHHHHHHHH
T ss_pred -cCceEEEecceecCCCCccccccceeEEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 239999999999994 5 4899999999999988 46788877777776554
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A | Back alignment and structure |
|---|
Probab=99.06 E-value=5.8e-09 Score=103.68 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
..++...||++|.+.||.||.+|.++...- + .+. +.|.++-- + ....||+|.--.+-..+..
T Consensus 159 Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~--------e--Gg~---~~f~~~~~--~-~~~~L~~SpqL~lq~l~~g-- 220 (456)
T 3m4p_A 159 RSEIQWYFRKYYHDNHFTEIQPPTIVKTQC--------E--GGS---TLFKLQYF--N-EPAYLTQSSQLYLESVIAS-- 220 (456)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEC----------------C---CCCEEEET--T-EEEEECSCCHHHHHTTHHH--
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeeecCCC--------C--Ccc---cccccccc--C-CCcccccCHHHHHHHHHhc--
Confidence 467889999999999999999999864311 0 011 11222211 0 1146776532222122222
Q ss_pred CCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 189 PPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
--|+|++|+|||++ . +.+|.|||+|+++.+++. ++.|+...++.+++.+
T Consensus 221 -~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~--d~~d~m~~~E~li~~~ 271 (456)
T 3m4p_A 221 -LGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFI--SFEDLLNHLEDLVCTV 271 (456)
T ss_dssp -HSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESC--CHHHHHHHHHHHHHHH
T ss_pred -cCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcC--CHHHHHHHHHHHHHHH
Confidence 23899999999999 4 479999999999999874 6778777777776554
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-08 Score=100.02 Aligned_cols=109 Identities=13% Similarity=0.143 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
.+.+.+.+|++|.+.||.||.+|.++... . ..-| +.|.+... .....||+|.--.+-+.|..
T Consensus 181 rs~i~~~ir~~~~~~gF~EV~TPil~~~~-------~--~~ga----~~f~~~~~---~~~~~L~~Spql~~k~l~~~-- 242 (487)
T 1eov_A 181 QAGVCELFREYLATKKFTEVHTPKLLGAP-------S--EGGS----SVFEVTYF---KGKAYLAQSPQFNKQQLIVA-- 242 (487)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSC-------S--SSSS----CCCEEEET---TEEEEECSCTHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHhCCcEEEeCCEEEEec-------C--CCCc----ccceeccC---CccEEcccChHHHHHHHHhc--
Confidence 35678889999999999999999997641 1 1111 22444322 11257886532222222332
Q ss_pred CCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEE-cCCCCHHHHHHHHHHHH
Q psy9576 189 PPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWI-DKNISFSDLKGVYLNFI 237 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~-g~~~~f~dLKg~l~~ll 237 (338)
..-|+|++|+|||.+ . ..+|.|||+|+++-+. +.+ +.++..+++.++
T Consensus 243 g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~--~~dlm~l~E~ll 292 (487)
T 1eov_A 243 DFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEH--YHEVLDTLSELF 292 (487)
T ss_dssp TCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSC--THHHHHHHHHHH
T ss_pred CCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcC--HHHHHHHHHHHH
Confidence 245999999999999 4 3689999999998654 322 244444444444
|
| >4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.78 E-value=5.5e-07 Score=89.76 Aligned_cols=126 Identities=11% Similarity=0.115 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhc-CCCCCCCCCcCccceeecCCccC-CCcceEeccchHHHHHHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTAL-NSPKNHPARSMHDTFYIKNRYVS-NNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L-~~p~~hpar~~~dt~~i~np~~~-~~~~~LRt~lsp~~l~~l~~ 186 (338)
.+.+.+.++++|...||+|+.+|.++... .|..- +-..++.. .+.|.+.+. + .+..+||+.++|...+....
T Consensus 49 ~~~l~~~i~~~~~~~Gy~eI~tP~le~~e-l~~~~~G~~~d~~~---~~my~~~D~--~~g~~l~LRPd~t~~~ar~~~~ 122 (467)
T 4e51_A 49 WEFFEATVKSLLRAYGYQNIRTPIVEHTP-LFTRGIGEVTDIVE---KEMYSFVDA--LNGENLTLRPENTAAVVRAAIE 122 (467)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHH-HHHHHTCTTSHHHH---HTCCEEECT--TTCCEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHH-HhhhccCCcccccc---cceEEEecC--CCCCEEEeCcccHHHHHHHHHH
Confidence 46788999999999999999999997653 33322 21111111 134655443 2 44579999999999998754
Q ss_pred C----CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHh
Q psy9576 187 N----KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVF 240 (338)
Q Consensus 187 ~----~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~l 240 (338)
+ ..|+|+|++|+|||.+ ....+..+|+|.++=+.|.+-.. .++..++..+++.+
T Consensus 123 ~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~l 183 (467)
T 4e51_A 123 HNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDL 183 (467)
T ss_dssp TTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHHc
Confidence 2 3599999999999998 45577889999998888743222 22334444444444
|
| >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-07 Score=90.65 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=94.7
Q ss_pred CCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhh-cCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH
Q psy9576 104 GGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTA-LNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR 182 (338)
Q Consensus 104 G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~-L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~ 182 (338)
......+.+.+.++++|...||+|+.+|.++.. ..|.. +.--.+.... +.|.+.+. +....+||+.++|..+|
T Consensus 34 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~-el~~~s~~g~~~~~~~---~my~~~D~--~g~~l~LRpd~T~~~aR 107 (344)
T 1z7m_A 34 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYT-QLYTALESNGKTFNQE---KMFQFIKH--EGQSITLRYDFTLPLVR 107 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEH-HHHHHHHCSSSCCCTT---SCCEEECT--TCCEEEECCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecCcccCcH-HHHhhccCCccccccc---cEEEEECC--CCCEEecCCCCcHHHHH
Confidence 345567889999999999999999999999875 34543 2211122222 33666554 34557999999999999
Q ss_pred HHhcC--CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 183 YSKIN--KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 183 ~l~~~--~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
....+ ..|+|+|++|+|||.+ ....+..+|+|+++-+.|.+... .++..++..+++.+ |.
T Consensus 108 ~~~~~~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~~l-gl 172 (344)
T 1z7m_A 108 LYSQIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQL-GL 172 (344)
T ss_dssp HHHTCCSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHH-TC
T ss_pred HHHhcCCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHHHC-CC
Confidence 88654 3699999999999998 45678899999999999865322 46777788888887 86
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-07 Score=94.96 Aligned_cols=111 Identities=19% Similarity=0.216 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH--HHHhcCC
Q psy9576 111 RTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI--RYSKINK 188 (338)
Q Consensus 111 ~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l--~~l~~~~ 188 (338)
++...||++|.+.||.||.+|.+++. |..-.++ .|.......+ ....||+| |.+. +.|...-
T Consensus 209 ~i~~~iR~ff~~~gFlEVeTPiL~~~---------~gGA~a~----pF~t~~n~~~-~~~yL~~S--pqLylk~L~v~G~ 272 (529)
T 4ex5_A 209 KAIASIRKFMGDADFMEVETPMLHPI---------PGGAAAK----PFVTHHNALD-MEMFLRIA--PELYLKRLIVGGF 272 (529)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESS---------CCSSSSC----CCEEEETTTT-EEEEECSC--SHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeecc---------CCCCccc----ccccccccCC-cceecccC--HHHHHHHHHhcCC
Confidence 66788999999999999999999753 2111112 1211101001 11467765 5553 3344433
Q ss_pred CCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 189 PPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
-|+|++|+|||++ .+.+|.|||+|+++.++. +++.|+..+++.+++.++
T Consensus 273 --~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af--~d~~dlm~l~E~li~~v~ 322 (529)
T 4ex5_A 273 --ERVFEINRNFRNEGVSPRHNPEFTMMEFYAAY--TDYRWLMDFTERLIRQAA 322 (529)
T ss_dssp --SEEEEEEEEECCSCCBTTBCSEEEEEEEEEET--CCHHHHHHHHHHHHHHHH
T ss_pred --CcEEEeehheecCCCCCCcccHhHhhhhhhhc--CCHHHHHHHHHHHHHHHH
Confidence 3999999999999 588999999999999987 578999888888887653
|
| >3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.8e-07 Score=86.66 Aligned_cols=128 Identities=14% Similarity=0.100 Sum_probs=92.2
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
...+.+.+.++++|...||+|+.+|.++.. ..|..-+ ++.. ..+.|.+.+. +.+..+||+.++|..+|.+.+
T Consensus 38 ~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~-el~~~~g---~~~~--~~~my~~~D~--~g~~l~LRpd~T~~~aR~~~~ 109 (373)
T 3rac_A 38 KRRRAVETRLLSFVEDAGYEPVTSGLFEYV-DTLLRAR---SPES--SRDWIRLFDG--GGDAVALRPEMTPSIARMAAP 109 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCCCSEEEH-HHHHTTS---CTTS--CCCCCBCCCC--SSSCEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEECCceeeH-HHHhhcC---Cccc--hhceEEEECC--CCCEEEECCcCHHHHHHHHHh
Confidence 446788999999999999999999999764 3444321 2222 0234666554 345579999999999998754
Q ss_pred ----CCCCceEEEeeeEEEeC-C------CCCCCcceeEEEEEEEcCC-CCH--HHHHHHHHHHHHHhccC
Q psy9576 187 ----NKPPIKVITSGRVYRID-S------DSTHSPMFHQIEGLWIDKN-ISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d-~------d~th~~~f~ql~~l~~g~~-~~f--~dLKg~l~~ll~~lfg~ 243 (338)
...|+|+|++|+|||.+ . ...+..+|+|+++=+.|.. -.. .++..++..+++.+ |.
T Consensus 110 ~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~l-gl 179 (373)
T 3rac_A 110 RVAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAAA-GV 179 (373)
T ss_dssp HHHTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHH-TC
T ss_pred ccccCCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHHc-CC
Confidence 35799999999999998 4 4567889999999999876 223 35667777788887 75
|
| >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.5e-05 Score=75.27 Aligned_cols=196 Identities=14% Similarity=0.131 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcC-CCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALN-SPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~-~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~- 186 (338)
...+.+.+++.+...||+|+.+|.+.+... +..-+ .|... . .+.|.+... ..+-.+||++.-+.+......
T Consensus 222 ~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l-~~~sG~~~~f~--e--~emf~v~~~--~~~~l~L~PTaE~~~~~l~~~~ 294 (501)
T 1wle_A 222 QHGLVNFTLNKLIHRGFTPMTVPDLLRGVV-FEGCGMTPNAK--P--SQIYNIDPS--RFEDLNLAGTAEVGLAGYFMDH 294 (501)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHHH-HHHHTCCSSSS--S--CSSCBBCTT--TSSSCEECSSHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHH-HHhhcCCCccC--c--cccEEEecC--CCCeEEECCcCcHHHHHHHhhc
Confidence 455677888888999999999999987643 33322 23211 1 144666432 122357898766666555432
Q ss_pred ----CCCCceEEEeeeEEEeCCC-------CCCCcceeEEEEEEEcCC------CCHHHHHHHHHHHHHHhccCCCeeEE
Q psy9576 187 ----NKPPIKVITSGRVYRIDSD-------STHSPMFHQIEGLWIDKN------ISFSDLKGVYLNFIRVFFESDNIQIR 249 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d~d-------~th~~~f~ql~~l~~g~~------~~f~dLKg~l~~ll~~lfg~~~~~~r 249 (338)
...|++++++|.|||.+.. -....+|.|.++...... -.+..+....+.+++.| |. ...+.
T Consensus 295 i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~L-gL-pyrvv 372 (501)
T 1wle_A 295 SVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTEL-GL-HFRVL 372 (501)
T ss_dssp EEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHT-TC-CEEEE
T ss_pred cCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHC-CC-cEEEE
Confidence 3579999999999999832 234578999999888654 34677888888899887 85 22221
Q ss_pred EccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC-----CC-C--eEEEEEeechhHHH
Q psy9576 250 FRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD-----PE-K--YIGFAFGSGLERLT 314 (338)
Q Consensus 250 ~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~-----~~-~--~~~~afelglerla 314 (338)
..++-.-+...+.+.|+.++... ..+|.||+.|...----.+.+++. .+ + +...+.+++++|+.
T Consensus 373 ~l~tgdlg~~a~~~~DiE~w~p~-~~~~~Ei~s~sn~~DfqarR~~iry~~~~gk~~~vHtlngSglav~R~l 444 (501)
T 1wle_A 373 DMPTQELGLPAYRKFDIEAWMPG-RGRFGEVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATGCAVPRLL 444 (501)
T ss_dssp ECCGGGSTTTCSEEEEEEEEETT-TTEEEEEEEEEECTTHHHHHHTCEEECSSSCEEECEEEEEEEEEHHHHH
T ss_pred EccCcccCCchhheecHhhcccc-cccceeEEeccccccchhhhcCcEEECCCCCEEEEEEECCccchHHHHH
Confidence 12322111112344444333111 346889998875542233444441 01 1 23344567899954
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.8e-07 Score=92.51 Aligned_cols=112 Identities=16% Similarity=0.235 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH--HHhcC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR--YSKIN 187 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~--~l~~~ 187 (338)
.++...||++|.+.||.||.+|.++... |+. || + |.+.......++..||+ ||.+.. .|..+
T Consensus 142 s~i~~~iR~fl~~~gFlEVeTPiL~~s~--------~eG--Ar---~-F~v~~~~~~~~~y~L~q--SPQl~kq~Lmv~G 205 (585)
T 1c0a_A 142 AKITSLVRRFMDDHGFLDIETPMLTKAT--------PEG--AR---D-YLVPSRVHKGKFYALPQ--SPQLFKQLLMMSG 205 (585)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSSBCCC--------SSS--SC---C-CEEECSSSTTCEEECCS--CSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCcEEEeCCEEecCC--------CCC--Cc---c-ceecccccCCceEeCcc--CHHHHHHHHHhcC
Confidence 4678899999999999999999997431 111 22 1 33211100122334775 466543 34444
Q ss_pred CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 188 KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
-. |+|++|+|||.+ .+++|.|||+|+++-++. +++.|+..+++.+++.++
T Consensus 206 ~~--rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af--~d~~dvm~~~E~li~~i~ 256 (585)
T 1c0a_A 206 FD--RYYQIVKCFRDEDLRADRQPEFTQIDVETSF--MTAPQVREVMEALVRHLW 256 (585)
T ss_dssp CC--EEEEEEEEECCCCCBTTBCSEEEEEEEEEES--CCHHHHHHHHHHHHHHHH
T ss_pred CC--ceEEEeceeecCCCCCCcCcccceeeeeecC--CCHHHHHHHHHHHHHHHH
Confidence 33 999999999999 578899999999999987 468899888888887665
|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-06 Score=86.05 Aligned_cols=125 Identities=13% Similarity=0.224 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc--
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI-- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~-- 186 (338)
.+.+.+.++++|...||+|+.+|.++.. ..|..-+ ++... +.|.+.+. +.+..+||+-++|...|.+.+
T Consensus 27 ~~~i~~~l~~~~~~~Gy~eI~tP~lE~~-el~~~~g---~~~~~---~my~f~D~--~g~~l~LRpd~T~~~aR~~~~~~ 97 (400)
T 3od1_A 27 KKNICDQMTEEINLWGYDMIETPTLEYY-ETVGVVS---AILDQ---QLFKLLDQ--QGNTLVLRPDMTAPIARLVASSL 97 (400)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEET-TTHHHHS---SSCGG---GSCEEECT--TSCEEEECSCSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccH-HHHhhcC---Ccccc---ceEEEECC--CCCEEEECCCCHHHHHHHHHhhc
Confidence 5678999999999999999999999765 3444332 22222 44776555 345579999999999998754
Q ss_pred --CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 187 --NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
...|+|+|++|+|||.+ ....+..+|+|+++=+.|.+-.. .++..++..+++.+ |.
T Consensus 98 ~~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~l-gl 158 (400)
T 3od1_A 98 KDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKRA-GL 158 (400)
T ss_dssp SSSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHT-TC
T ss_pred ccCCCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHHC-CC
Confidence 34699999999999998 45678899999999999865333 35667777888887 85
|
| >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.1e-05 Score=76.21 Aligned_cols=191 Identities=12% Similarity=0.028 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc---
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI--- 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~--- 186 (338)
..+.+.+++.+...||+++.+|.+++.. .+..-+.-+.. ..+.|.+.+. ..+||+...+.+.+....
T Consensus 176 ~~L~~~~~~~~~~~Gy~ev~tP~l~~~~-l~~~sG~~~~f----~~emy~~~~~-----~l~LrPt~e~~i~~~~~~~i~ 245 (425)
T 2dq3_A 176 RALINFMLDLHTKKGYKEICPPHLVKPE-ILIGTGQLPKF----EEDLYKCERD-----NLYLIPTAEVPLTNLYREEIL 245 (425)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEECHH-HHHHHSCTTTT----GGGSCBCTTT-----CCEECSSTHHHHHGGGTTEEE
T ss_pred HHHHHHHHHHHHHcCCEEEECCccccHH-HHHhcCCCCcC----hhhheEecCC-----eEEEcCCCcHHHHHHHHhhcc
Confidence 3456778888999999999999998764 44443321111 1234555432 268999888887776543
Q ss_pred --CCCCceEEEeeeEEEeCC-C-------CCCCcceeEEEEEEEcCCC----CHHHHHHHHHHHHHHhccCCCeeEE-Ec
Q psy9576 187 --NKPPIKVITSGRVYRIDS-D-------STHSPMFHQIEGLWIDKNI----SFSDLKGVYLNFIRVFFESDNIQIR-FR 251 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d~-d-------~th~~~f~ql~~l~~g~~~----~f~dLKg~l~~ll~~lfg~~~~~~r-~~ 251 (338)
...|+|++.+|+|||.+. . -....+|+|+++...+..- .+..+......+++.+ |. . ++ ..
T Consensus 246 s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~L-GL-~--~rvv~ 321 (425)
T 2dq3_A 246 KEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLL-GL-P--YRVVE 321 (425)
T ss_dssp ETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHH-TC-C--EEEEE
T ss_pred ccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHC-CC-c--eEEEE
Confidence 346999999999999984 2 1256799999998876432 2467888888999988 86 2 33 11
Q ss_pred -cCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC---C--C----CeEEEEEeechhHHHH
Q psy9576 252 -PSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD---P--E----KYIGFAFGSGLERLTM 315 (338)
Q Consensus 252 -ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~---~--~----~~~~~afelglerlam 315 (338)
++-..+...+...|+.++... ..+|.|+..|+-..----+.+++. . . -+.++..+++++|+.-
T Consensus 322 l~~gdlg~~a~~~~diE~w~p~-~~~~~ei~s~sn~~Dfqa~r~~i~y~~~~~~k~~~vHtl~Gs~~av~R~i~ 394 (425)
T 2dq3_A 322 LCTGDLGFSAAKTYDIEVWFPS-QNKYREISSCSNCEDFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVGRTLA 394 (425)
T ss_dssp CCTTTCCTTCSEEEEEEEEEGG-GTEEEEEEEEEECTTHHHHHHTEEEECTTTCSEEECEEEEEEEEEHHHHHH
T ss_pred ecCCcCCChHHhccchhhccch-hHHHHHHHHcCCccccCcccCCeEEECCCCCeeEEEEEEeccccHHHHHHH
Confidence 222111112244444332111 246888888876532222333331 1 1 1234455566999654
|
| >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-06 Score=85.52 Aligned_cols=132 Identities=14% Similarity=0.181 Sum_probs=95.0
Q ss_pred CCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhc-CCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHH
Q psy9576 105 GLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTAL-NSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRY 183 (338)
Q Consensus 105 ~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L-~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~ 183 (338)
.....+.+.+.+++.|...||+|+.+|.+++.. .|..- +-..++... +.|.+.+. +.+..+||+-++|...|.
T Consensus 16 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~e-l~~~~~G~~~d~~~~---em~~~~D~--~g~~l~Lrpd~t~~~ar~ 89 (421)
T 1h4v_B 16 ELRMHQRIVATARKVLEAAGALELVTPIFEETQ-VFEKGVGAATDIVRK---EMFTFQDR--GGRSLTLRPEGTAAMVRA 89 (421)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccccHH-HhhhccCCccccccc---ceEEEECC--CCCEEeeCCcchHHHHHH
Confidence 344577899999999999999999999997653 33321 211112222 34666554 345579999999999998
Q ss_pred HhcC-----CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCC--HHHHHHHHHHHHHHhccC
Q psy9576 184 SKIN-----KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNIS--FSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 184 l~~~-----~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~--f~dLKg~l~~ll~~lfg~ 243 (338)
..++ ..|+|+|.+|+|||.+ ....+..+|+|.++-+.|.+.. -.++..++..+++.+ |.
T Consensus 90 ~~~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~l-gl 156 (421)
T 1h4v_B 90 YLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKEL-GL 156 (421)
T ss_pred HHhccccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhhHHHHHHHHHHHHHc-CC
Confidence 7532 4599999999999988 4556788999999988875422 235667777778877 75
|
| >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-06 Score=87.74 Aligned_cols=147 Identities=13% Similarity=0.153 Sum_probs=98.3
Q ss_pred ccccCCCCCCCCCCCC--CCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCcc-ceeecCCc
Q psy9576 88 KTNKIDITLPGRGKNK--GGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHD-TFYIKNRY 164 (338)
Q Consensus 88 ~~~~id~tlp~~~~~~--G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~d-t~~i~np~ 164 (338)
++.++....|.+.... ....-.+.+.+.++++|...||+++.+|.++.. ..|..-+ ..+ .+ .|.+.+..
T Consensus 6 ~~~~~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~-~~~~~~G-~~~------ke~m~~~~d~~ 77 (465)
T 3net_A 6 KNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERL-EVLQAKG-NQG------DNIIYGLEPIL 77 (465)
T ss_dssp ---CCCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEH-HHHHGGG-CC--------CBEEEEEEEC
T ss_pred CCccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccH-HHHhccC-CCC------ccceEEEeccc
Confidence 3445666666543322 112224678999999999999999999999765 3444333 211 23 56664430
Q ss_pred --c-----------CCCcceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH
Q psy9576 165 --V-----------SNNKPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF 226 (338)
Q Consensus 165 --~-----------~~~~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f 226 (338)
. +....+||+-++|...|.+.. ...|+|+|.+|+|||.+ ....+..+|+|+++=+.|.+...
T Consensus 78 ~~g~~~~~~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~ 157 (465)
T 3net_A 78 PPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLS 157 (465)
T ss_dssp ----------------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCC
T ss_pred ccccccccccccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCcc
Confidence 0 134579999999999998754 24699999999999998 45678899999999999865443
Q ss_pred H----HHHHHHHHHHHHhccC
Q psy9576 227 S----DLKGVYLNFIRVFFES 243 (338)
Q Consensus 227 ~----dLKg~l~~ll~~lfg~ 243 (338)
. ++..++..+++.+ |.
T Consensus 158 a~~DaEvi~l~~~~l~~l-gl 177 (465)
T 3net_A 158 LLYDAQMPAIITEIFEAV-NI 177 (465)
T ss_dssp HHHHHHHHHHHHHHHHHH-TC
T ss_pred chhhHHHHHHHHHHHHHc-CC
Confidence 4 5778888888888 86
|
| >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=6.7e-07 Score=87.49 Aligned_cols=130 Identities=12% Similarity=0.192 Sum_probs=88.2
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhc-CCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHh
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTAL-NSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSK 185 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L-~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~ 185 (338)
.....+.+.+++.|...||+|+.+|.+++.. .|..- +-..++... +.|.+.+. +.+..+||+.++++..+...
T Consensus 17 ~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~-l~~~~~g~~~~~~~~---~m~~~~D~--~g~~~~Lrp~~t~~~~r~~~ 90 (420)
T 1qe0_A 17 KKWRYIENQLDELMTFYNYKEIRTPIFESTD-LFARGVGDSTDVVQK---EMYTFKDK--GDRSITLRPEGTAAVVRSYI 90 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTCEECBCCSEEEHH-HHCC--------------CCEEECHH--HHCCEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCEEccCcccchHH-HhhhccCCccchhhh---heEEEEcC--CCCEEEeCCCChHHHHHHHH
Confidence 3467889999999999999999999997753 33321 111112222 33666432 12337999999999999874
Q ss_pred c------CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 186 I------NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 186 ~------~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
. ...|+|++.+|+|||.+ ....+..+|+|.++-+.|.+-.. .++..++..+++.+ |.
T Consensus 91 ~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~l-gl 156 (420)
T 1qe0_A 91 EHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSF-GL 156 (420)
T ss_dssp HTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHT-TC
T ss_pred hccccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHHc-CC
Confidence 2 24599999999999998 45567889999999998865333 56667778888887 86
|
| >1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A | Back alignment and structure |
|---|
Probab=98.46 E-value=4.2e-05 Score=75.19 Aligned_cols=191 Identities=14% Similarity=0.116 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc---
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI--- 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~--- 186 (338)
..+.+.+++.+...||+|+.+|.+.+.. .+.+-+.-++. ..+.|.+.+ +..+||++-.+.+......
T Consensus 170 ~aL~~~~~~~~~~~Gy~ev~tP~l~~~~-l~~~sG~~~~f----~~emy~~~d-----~~l~L~Pt~e~~~~~~~~~~~~ 239 (421)
T 1ses_A 170 LALLRFAMDFMARRGFLPMTLPSYAREK-AFLGTGHFPAY----RDQVWAIAE-----TDLYLTGTAEVVLNALHSGEIL 239 (421)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEEEHH-HHHHHTCTTTT----GGGSCBBTT-----SSEEECSSTHHHHHHTTTTCEE
T ss_pred HHHHHHHHHHHHHcCCEEEeCCceecHH-HHHhcCCCCcC----chhcEEEcC-----CeEEEeecCcHHHHHHhccccc
Confidence 4567778888889999999999998764 44443332221 123355543 2268998877777666543
Q ss_pred --CCCCceEEEeeeEEEeCC-C---CC----CCcceeEEEEEEEcCC------CCHHHHHHHHHHHHHHhccCCCeeEEE
Q psy9576 187 --NKPPIKVITSGRVYRIDS-D---ST----HSPMFHQIEGLWIDKN------ISFSDLKGVYLNFIRVFFESDNIQIRF 250 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d~-d---~t----h~~~f~ql~~l~~g~~------~~f~dLKg~l~~ll~~lfg~~~~~~r~ 250 (338)
...|+|++++|+|||.+. . .+ ...+|+|+++...... ..+..+......+++.| |. .++.
T Consensus 240 s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~L-GL---~~rv 315 (421)
T 1ses_A 240 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLL-EL---PYRL 315 (421)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHT-TC---CEEE
T ss_pred CchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHC-CC---ceEE
Confidence 346999999999999983 1 12 5589999999887654 23457888888999888 85 3332
Q ss_pred c--cCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC---C-CC----eEEEEEeechhHHHH
Q psy9576 251 R--PSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD---P-EK----YIGFAFGSGLERLTM 315 (338)
Q Consensus 251 ~--ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~---~-~~----~~~~afelglerlam 315 (338)
. ++-.-+...+.+.|+.++... ..+|.||..|.-..---.+.+++. + .+ +...+-+++++|+.-
T Consensus 316 v~l~t~dlg~~a~~~~DiE~w~p~-~~~~~ei~s~s~~~Dfqarr~~i~y~~~~~~~~~vhtlngs~lav~R~l~ 389 (421)
T 1ses_A 316 VEVATGDMGPGKWRQVDIEVYLPS-EGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILA 389 (421)
T ss_dssp EECCHHHHCTTCSEEEEEEEEETT-TTEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEEETHHHH
T ss_pred EEecCccCCchhhhcccHhheech-hccchheeeccccchhhhhhhcCEeECCCCCEEEEEecCCccchHHHHHH
Confidence 1 111001111234444332111 346888877765531112223331 0 11 234556677898653
|
| >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.8e-06 Score=85.78 Aligned_cols=127 Identities=13% Similarity=0.097 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN 187 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~ 187 (338)
..+.+.+.++++|...||+|+.+|.++... .|.. ...|-. ..+.|.+.+. +....+||+-++|..+|....+
T Consensus 45 ~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~e-l~~~---~~G~~~--~~~my~f~D~--~g~~l~LRpd~T~~~aR~~~~~ 116 (456)
T 3lc0_A 45 CRRHLFDVFHATAKTFGFEEYDAPVLESEE-LYIR---KAGEEI--TEQMFNFITK--GGHRVALRPEMTPSLARLLLGK 116 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEGG-GGCC---CSCCHH--HHTCEEEECS--SSCEEEECSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCcEeehh-hhcc---ccccch--hhceEEEEcC--CCCEEecCCcCHHHHHHHHHhc
Confidence 356789999999999999999999997642 2321 111110 1244666554 3455799999999999988653
Q ss_pred ----CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHH--HHHHHHHHHHHHhccC
Q psy9576 188 ----KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFS--DLKGVYLNFIRVFFES 243 (338)
Q Consensus 188 ----~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~--dLKg~l~~ll~~lfg~ 243 (338)
..|+|+|++|+|||.+ ....+..+|+|+++=+.|.+.... ++..++..+++.+ |.
T Consensus 117 ~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~l-gl 178 (456)
T 3lc0_A 117 GRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSL-GL 178 (456)
T ss_dssp CTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHT-TC
T ss_pred CcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHc-CC
Confidence 2499999999999998 456788999999999998754444 4667777888887 85
|
| >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-05 Score=80.41 Aligned_cols=198 Identities=16% Similarity=0.183 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCcc--CCCcceEeccchHHHHHHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV--SNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~--~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.+.+.+.+++.|...||+++.+|.+++.. .|.+- ..|-..-..+.|.+..... ..+..+||+...++..+...+
T Consensus 41 ~~~i~~~~~~~~~~~G~~ei~tP~l~~~~-l~~~~---~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~ 116 (459)
T 1nj8_A 41 RRYTFEIIRNLLDESGHDEALFPMLIPED-LLAKE---AEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKL 116 (459)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHH-HHHHH---CSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCEEeeCCcccCHH-HHhhh---cCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHH
Confidence 56788999999999999999999998753 35430 1222111123355543200 024479999999999888753
Q ss_pred -----CCCCceEEEeeeEEEeC-CCC-C--CCccee-EEEEEEEcCC-----CCHHHHHHHHHHHHHHhccCCCeeEEEc
Q psy9576 187 -----NKPPIKVITSGRVYRID-SDS-T--HSPMFH-QIEGLWIDKN-----ISFSDLKGVYLNFIRVFFESDNIQIRFR 251 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d-~d~-t--h~~~f~-ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg~~~~~~r~~ 251 (338)
...|+|++.+|+|||.+ .+. - ...+|+ |.++-+.+.+ ..+..+..+...+++.| |. ...+...
T Consensus 117 ~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~~~~~~~L-Gl-~~~~~~~ 194 (459)
T 1nj8_A 117 WVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTL-GI-PYLISKR 194 (459)
T ss_dssp TCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH-TC-CCEEEEE
T ss_pred hhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHHHHHHHHC-CC-ceEEeec
Confidence 24699999999999998 322 2 567999 9998776532 22334777788888888 86 3333333
Q ss_pred c--CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC-----CC-C-eEEEEEeechhHHHHHH
Q psy9576 252 P--SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD-----PE-K-YIGFAFGSGLERLTMLR 317 (338)
Q Consensus 252 p--s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~-----~~-~-~~~~afelglerlam~~ 317 (338)
+ .-++.......++..+.+| ..+++|.+-.+....-+.+|+. .. . .+...||++ ||+..+.
T Consensus 195 ~~~ek~~ga~~~~~ie~~~~dg----~~~e~gt~~~lg~~~s~~~~~~Y~~~~G~~~~v~~~~~Gig-eRli~al 264 (459)
T 1nj8_A 195 PEWDKFPGAEYTMAFDTIFPDG----RTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGIS-DRVIASI 264 (459)
T ss_dssp CTTSCCTTCSEEEEEEEECTTS----CEEEEEEEEEEETHHHHHTTCEEECTTSSEEECEEEEEEEC-THHHHHH
T ss_pred CchhhcCCcccceeEEEEcCCC----cEEEEEEEeecccccccccCeEEECCCCCEeeeeEeeccHH-HHHHHHH
Confidence 3 2233222223445444111 1346665544444444455542 11 1 145777777 9987544
|
| >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=2.8e-06 Score=83.58 Aligned_cols=127 Identities=12% Similarity=0.157 Sum_probs=94.4
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhh-cCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHh
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTA-LNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSK 185 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~-L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~ 185 (338)
...+.+.+.+++.|...||+|+.+|.+++. ..|.. .+- ... .+.|.+.+. +....+||+.++|..+|...
T Consensus 21 ~~~~~i~~~i~~~~~~~G~~ei~tP~le~~-el~~~~~G~---~~~---~em~~~~D~--~g~~l~LrPd~t~~~aR~~~ 91 (434)
T 1wu7_A 21 DVEKFIFKTAEEAAEAFGFRRIDFPSLEYL-DLYRIKSGE---ELL---QQTYSFVDK--GGREVTLIPEATPSTVRMVT 91 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECBCCSEEET-HHHHTTSCT---TGG---GGSCEEECT--TSCEEEECSCSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCEEeeccccccH-HHhhhccCC---ccc---cceEEEECC--CCCEEEeCCCChHHHHHHHH
Confidence 346788999999999999999999999874 34443 221 111 244666554 34557999999999999886
Q ss_pred cCC---CCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 186 INK---PPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 186 ~~~---~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
++. .|+|+|.+|+|||.+ ....+..+|+|.++-+.|.+-.. .++..++..+++.+ |.
T Consensus 92 ~~~~~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~l-gl 154 (434)
T 1wu7_A 92 SRKDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRL-GL 154 (434)
T ss_dssp TCTTCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHT-TT
T ss_pred hcCCCCCCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHHHHHHHHHHHc-CC
Confidence 542 599999999999998 45567889999999999864322 34566777777777 86
|
| >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.4e-06 Score=85.26 Aligned_cols=130 Identities=13% Similarity=0.142 Sum_probs=93.8
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhc-CCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHh
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTAL-NSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSK 185 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L-~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~ 185 (338)
...+.+.+.+++.|...||+|+.+|.+++.. .|..- +-..++... +.|.+.+. +.+..+||+-+++..+|...
T Consensus 19 ~~~~~i~~~i~~~~~~~G~~ei~tP~le~~e-l~~~~~G~~~d~~~~---em~~~~D~--~g~~l~Lrpd~t~~~aR~~~ 92 (423)
T 1htt_A 19 AIWQRIEGTLKNVLGSYGYSEIRLPIVEQTP-LFKRAIGEVTDVVEK---EMYTFEDR--NGDSLTLRPEGTAGCVRAGI 92 (423)
T ss_dssp HHHHHHHHHHHHHHHTTTCEECBCCSEEEHH-HHHHHHCSSSHHHHH---TCEEEECT--TSCEEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCEEecccccCHHH-HHhhccCCchhhhhh---heEEEEcC--CCCEEEeCCCchHHHHHHHH
Confidence 3467889999999999999999999998753 34321 211011111 34666554 34557999999999999875
Q ss_pred c----CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 186 I----NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 186 ~----~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
+ ...|+|+|.+|+|||.+ ....+..+|+|.++-+.|.+... .++..++..+++.+ |.
T Consensus 93 ~~~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~l-gl 156 (423)
T 1htt_A 93 EHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRAL-GI 156 (423)
T ss_dssp HHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHH-TC
T ss_pred hcccccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCCchhhHHHHHHHHHHHHHC-CC
Confidence 3 24699999999999998 45667889999999888854322 35667777788887 74
|
| >4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.6e-06 Score=87.19 Aligned_cols=112 Identities=16% Similarity=0.239 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHh-hCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH--HHhc
Q psy9576 110 MRTLERIEKIFY-SIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR--YSKI 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~-~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~--~l~~ 186 (338)
.++...||++|. ..||.||.+|.++.. .|. .|+. |.+.... ......|++| |.+.. .|..
T Consensus 152 s~i~~~iR~f~~~~~gF~EVeTPiL~~s--------t~~--GA~~----F~v~~~~-~g~~~~L~qS--pql~kq~l~v~ 214 (617)
T 4ah6_A 152 SQMVMKMREYLCNLHGFVDIETPTLFKR--------TPG--GAKE----FLVPSRE-PGKFYSLPQS--PQQFKQLLMVG 214 (617)
T ss_dssp HHHHHHHHHHHHTTSCCEECCCCSSBCC--------CCS--SSCC----CEEECSS-TTCEEECCSS--TTHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCeEEEeCCeeccC--------CCC--CCcC----ceecccc-CCcccccccC--HHHHHHHHHhc
Confidence 467889999997 799999999999642 111 1221 2221110 1122356654 65443 3444
Q ss_pred CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhcc
Q psy9576 187 NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg 242 (338)
.-. |+|++|+|||.+ .+.+|.|||+|+++.++. +++.|+...++.+++.+|.
T Consensus 215 g~~--rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af--~d~~d~m~~~E~l~~~~~~ 267 (617)
T 4ah6_A 215 GLD--RYFQVARCYRDEGSRPDRQPEFTQIDIEMSF--VDQTGIQSLIEGLLQYSWP 267 (617)
T ss_dssp SCS--EEEEEEEEECCCSSCSSSCSEEEEEEEEEES--CCHHHHHHHHHHHHHHHSC
T ss_pred ccC--cEEEEEhheecccCCCCcCcceecceeeecC--CCHHHHHHHHHHHHHHHHH
Confidence 333 999999999999 578899999999999987 5799999999999999875
|
| >4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=1e-05 Score=80.06 Aligned_cols=125 Identities=16% Similarity=0.164 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN- 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~- 187 (338)
.+.+.+.++++|...||+|+.+|.++... .|..- ..+... ..|.+.+. +.+..+||+-+++..+|.+.++
T Consensus 31 ~~~i~~~~~~~~~~~Gy~eI~tP~le~~e-l~~~~---~g~~~~---~~y~f~D~--~g~~l~LRPd~T~~~aR~~~~~~ 101 (464)
T 4g84_A 31 REKVFDVIIRCFKRHGAEVIDTPVFELKE-TLMGK---YGEDSK---LIYDLKDQ--GGELLSLRYDLTVPFARYLAMNK 101 (464)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHH-HHTTS---CC-------CCCBBCCC--SSCCEEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCeEEECcccCcHH-Hhccc---cCcCcc---eeEEEECC--CCCEEEeCCcCcHHHHHHHHhcC
Confidence 57888999999999999999999997643 33211 111111 23555554 3455799999999999987654
Q ss_pred CCCceEEEeeeEEEeCC---CCCCCcceeEEEEEEEcCCCC-H--HHHHHHHHHHHHHhccC
Q psy9576 188 KPPIKVITSGRVYRIDS---DSTHSPMFHQIEGLWIDKNIS-F--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d~---d~th~~~f~ql~~l~~g~~~~-f--~dLKg~l~~ll~~lfg~ 243 (338)
..|+|+|.+|.|||.+. ...+..+|+|+.+=+.|..-+ . .++-.++..+++.+ |.
T Consensus 102 ~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~l-gl 162 (464)
T 4g84_A 102 LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSL-QI 162 (464)
T ss_dssp CSCEEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHHH-TC
T ss_pred CCCceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHHh-CC
Confidence 56999999999999873 234677999999988885322 2 34666777778887 75
|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=8.9e-06 Score=81.89 Aligned_cols=125 Identities=16% Similarity=0.163 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN- 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~- 187 (338)
.+.+.+.++++|...||+|+.+|.++... .|..- ..+-.. ..|.+.+. +.+..+||+-+++..+|.+..+
T Consensus 84 ~~~ie~~i~~~~~~~Gy~eI~tP~lE~~e-l~~~~---~ge~~~---~my~f~D~--~g~~l~LRPd~T~~~aR~~~~~~ 154 (517)
T 4g85_A 84 REKVFDVIIRCFKRHGAEVIDTPVFELKE-TLMGK---YGEDSK---LIYDLKDQ--GGELLSLRYDLTVPFARYLAMNK 154 (517)
T ss_dssp HHHHHHHHHHHHHHHTCEECBCCSEEEHH-HHHCC------------CSCBBCCT--TSCCEEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCeEEECcccCcHH-Hhhcc---cCcCcc---eeEEEECC--CCCEEEeCCcCcHHHHHHHHhCC
Confidence 56889999999999999999999997643 33211 011111 22445444 3455799999999999987654
Q ss_pred CCCceEEEeeeEEEeCC-C--CCCCcceeEEEEEEEcCCCC-H--HHHHHHHHHHHHHhccC
Q psy9576 188 KPPIKVITSGRVYRIDS-D--STHSPMFHQIEGLWIDKNIS-F--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d~-d--~th~~~f~ql~~l~~g~~~~-f--~dLKg~l~~ll~~lfg~ 243 (338)
..|+|+|++|+|||.+. . .-+..+|+|+++=+.|..-+ . .++-.++..+++.+ |.
T Consensus 155 ~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~l-gl 215 (517)
T 4g85_A 155 LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSL-QI 215 (517)
T ss_dssp CSCEEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHH-CC
T ss_pred CCCceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHhh-cC
Confidence 56999999999999873 2 24678999999988885322 2 34666777788887 75
|
| >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A | Back alignment and structure |
|---|
Probab=98.27 E-value=5.7e-05 Score=75.41 Aligned_cols=198 Identities=11% Similarity=0.077 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccC--CCcceEeccchHHHHHHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS--NNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~--~~~~~LRt~lsp~~l~~l~~ 186 (338)
.+.+.+.+++.|...||+++.+|.+++.. .|.+ ...|-..-..+.|.+...... .+..+||+...++..+...+
T Consensus 47 ~~~I~~~~r~~~~~~G~~ei~tP~l~~~e-l~~~---~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~ 122 (477)
T 1hc7_A 47 WENIQQVLDRMFKETGHQNAYFPLFIPMS-FLRK---EAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSK 122 (477)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEST-TC------------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEecCccccHH-HHhh---cCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHh
Confidence 56788999999999999999999998763 3332 122311111233555432000 23479999999988877643
Q ss_pred -----CCCCceEEEeeeEEEeC-CC--CCCCcceeEEEEEEEcCC-----CCHHHHHHHHHHHH-HHhccCCCeeEEEcc
Q psy9576 187 -----NKPPIKVITSGRVYRID-SD--STHSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFI-RVFFESDNIQIRFRP 252 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d-~d--~th~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll-~~lfg~~~~~~r~~p 252 (338)
...|+|++.+|+|||.+ .- -....+|+|.++-+.|.+ ..+..+..+...++ +.| |. ...+...+
T Consensus 123 ~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i~~~~L-gl-~~~~~~~~ 200 (477)
T 1hc7_A 123 WIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYA-AI-PVIEGLKT 200 (477)
T ss_dssp HCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHH-CC-CCEEEECC
T ss_pred hhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHHHHHhc-CC-eEEEEeCC
Confidence 25799999999999999 32 226789999999887642 12233444567788 666 86 33333333
Q ss_pred --CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC-----CC-Ce-EEEEEeechhHHHHHH
Q psy9576 253 --SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD-----PE-KY-IGFAFGSGLERLTMLR 317 (338)
Q Consensus 253 --s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~-----~~-~~-~~~afelglerlam~~ 317 (338)
..|........++....+|+ + +++|.+=.+.-+.-..+|+. .. ++ +...||++ +|+..+.
T Consensus 201 ~~e~~~g~~~~~~ie~~~~dgr---~-~~~gt~~~lg~~~s~~~g~~y~~~~G~~~~~~~~~~Gig-eRli~~l 269 (477)
T 1hc7_A 201 EKEKFAGAVYTTTIEALMKDGK---A-LQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLS-WRFIGAI 269 (477)
T ss_dssp TTTSCTTSSEEEEEEEECTTSC---E-EEEEEEEEEETHHHHHTTCEEECTTSCEEECEEEEEEEE-THHHHHH
T ss_pred hHHhcCCcccceEEEEEcCCCc---E-EEEeeeEEcccccccccCeEEECCCCCEEeeeEeeccHH-HHHHHHH
Confidence 22222212234444431222 2 34544433434444556552 11 11 24678888 9987543
|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.1e-05 Score=79.05 Aligned_cols=196 Identities=13% Similarity=0.200 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhh-cCCCCCCCCCcCccceeecCCcc--CCCcceEeccchHHHHHHHh
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTA-LNSPKNHPARSMHDTFYIKNRYV--SNNKPLLRTHTSPMQIRYSK 185 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~-L~~p~~hpar~~~dt~~i~np~~--~~~~~~LRt~lsp~~l~~l~ 185 (338)
.+.+.+.+++.|.. ||+|+.+|.+++.. .|.+ - .|-..-..+.|.+..... ..+..+||+...+++.+...
T Consensus 74 ~~~i~~~~~~~~~~-G~~ei~tP~l~~~~-l~~~~s----G~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~ 147 (501)
T 1nj1_A 74 RKNTLKILRRILDR-DHEEVLFPLLVPED-ELAKEA----IHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFA 147 (501)
T ss_dssp HHHHHHHHHHHHTT-TCEECCCCSEEEHH-HHTTSH----HHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCEEEecCcEecHH-HHhccc----CCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHH
Confidence 46778889999999 99999999998753 3322 1 010000112355542100 02236899999988888765
Q ss_pred c-----CCCCceEEEeeeEEEeCC-CC---CCCccee-EEEEEEEcCC-----CCHHHHHHHHHHHHHHhccCCCeeEEE
Q psy9576 186 I-----NKPPIKVITSGRVYRIDS-DS---THSPMFH-QIEGLWIDKN-----ISFSDLKGVYLNFIRVFFESDNIQIRF 250 (338)
Q Consensus 186 ~-----~~~pirifeiG~Vyr~d~-d~---th~~~f~-ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg~~~~~~r~ 250 (338)
. ...|+|++.+|+|||.+. +. ....+|+ |.++-+.+.+ ..+..+..+...+++.| |. ...+..
T Consensus 148 ~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~L-gl-~~~~~~ 225 (501)
T 1nj1_A 148 LWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSL-GI-PYLITR 225 (501)
T ss_dssp HHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH-TC-CCEEEE
T ss_pred hhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHC-CC-eEEEEe
Confidence 3 256999999999999983 22 1467999 9998665421 22444677788888888 86 344434
Q ss_pred ccCCCCCCCCc--eEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC-----CC-Ce-EEEEEeechhHHHHHH
Q psy9576 251 RPSYFPFTEPS--AEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD-----PE-KY-IGFAFGSGLERLTMLR 317 (338)
Q Consensus 251 ~ps~fpf~~Ps--~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~-----~~-~~-~~~afelglerlam~~ 317 (338)
.+....|.... ..+++.+.+ +.++++|.+-.+.....+.+|+. .. ++ ....||++ +|+....
T Consensus 226 ~~~~e~~~~a~~~~die~~l~~----g~~~ei~t~~~lg~~~a~~~~~ry~~~~g~~~~~h~~g~Gig-eRli~al 296 (501)
T 1nj1_A 226 RPPWDKFPGSEYTVAFDTLMPD----GKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLS-DRVIASV 296 (501)
T ss_dssp CCTTTSCTTCSEEEEEEEECTT----SCEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEC-THHHHHH
T ss_pred CCchhhcCCcccceEEEEEcCC----CCEEEEEEEEeccccchhhcCeEEECCCCCEEeeeeccccHH-HHHHHHH
Confidence 33322222121 345554412 23678887765655555566652 01 12 24678888 9986544
|
| >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A | Back alignment and structure |
|---|
Probab=98.18 E-value=5.7e-05 Score=74.92 Aligned_cols=193 Identities=10% Similarity=0.019 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc---
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI--- 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~--- 186 (338)
..+.+.+++.+...||+|+.+|.+.+.. .+..-+ |-..-..+.|.+.+. ..+||+...+.+......
T Consensus 197 ~aL~~~~~~~~~~~Gy~ev~tP~l~~~~-l~~~sG----~~~~f~~emy~~~d~-----~l~LrPt~e~~~~~~~~~~~~ 266 (455)
T 2dq0_A 197 LALIRFALDRLIEKGFTPVIPPYMVRRF-VEEGST----SFEDFEDVIYKVEDE-----DLYLIPTAEHPLAGMHANEIL 266 (455)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEECHH-HHHTTS----CTTHHHHTCCBBTTS-----SCEECSSTHHHHHHTTTTEEE
T ss_pred HHHHHHHHHHHHHcCCEEEeCCcccCHH-HHHhcC----CCCCChHhhCeecCC-----cEEEcCcCcHHHHHHHHhCcc
Confidence 4556777888889999999999998763 444333 211111233555432 268999888887776543
Q ss_pred --CCCCceEEEeeeEEEeCCCC--------CCCcceeEEEEEEEcCCCC----HHHHHHHHHHHHHHhccCCCeeEEEcc
Q psy9576 187 --NKPPIKVITSGRVYRIDSDS--------THSPMFHQIEGLWIDKNIS----FSDLKGVYLNFIRVFFESDNIQIRFRP 252 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d~d~--------th~~~f~ql~~l~~g~~~~----f~dLKg~l~~ll~~lfg~~~~~~r~~p 252 (338)
...|+|++++|+|||.+..+ ....+|+|.++......-+ +..+......+++.| |. ...+...+
T Consensus 267 s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~L-GL-~yrv~~~~ 344 (455)
T 2dq0_A 267 DGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQEL-EI-PYRVVNIC 344 (455)
T ss_dssp ETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHT-TC-CEEEEECC
T ss_pred CchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHc-CC-ceEEEECC
Confidence 35699999999999998421 1567999999988764422 457788888889887 86 33222222
Q ss_pred CCCCCCCCceEEEEEeecCCCCCCCeeEeee---eecCHHHhhh-CC-C-CCC---CeEEEEEeechhHHHH
Q psy9576 253 SYFPFTEPSAEIDIVFQDGPLKGNWLEISGA---GQVNPKVLCN-MN-L-DPE---KYIGFAFGSGLERLTM 315 (338)
Q Consensus 253 s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~---G~vhP~Vl~~-~g-i-~~~---~~~~~afelglerlam 315 (338)
+-..+...+.+.|+.++... .++|.||+.| |-.-|.-+.- +. - +.. -+.+...+++++|+.-
T Consensus 345 ~gdlg~~a~~~~diE~w~p~-~~~~~ei~s~s~c~DfqarR~~iry~~~~~g~~~~vHtlngs~lav~R~i~ 415 (455)
T 2dq0_A 345 TGDLGYVAAKKYDIEAWMPG-QGKFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIATSRAIV 415 (455)
T ss_dssp GGGSCSSCSEEEEEEEEETT-TTEEEEEEEEEECTTTTHHHHTEEEESSTTSCCEECEEEEEEEEEHHHHHH
T ss_pred CccccChhhceeeeeeecCc-CCcccEEEeeccchhhHhhccCcEEecCCCCcEEEEEEEechHhHHHHHHH
Confidence 22222222344444332111 2468898865 4444544331 11 0 111 1233456788999653
|
| >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=4.3e-05 Score=77.74 Aligned_cols=128 Identities=11% Similarity=0.124 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc-
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI- 186 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~- 186 (338)
-.+.+.+.+++.|...||+|+.+|.+++.. .|..-+. .++-.. +.|.+.+. ..+..+||+...|+..+...+
T Consensus 49 ~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~-l~~~sG~-~~~~~~---~m~~~~d~--~~~~~~LrP~~~~~~~~~~~~~ 121 (572)
T 2j3l_A 49 VLEKLKTIMREEFEKIDAVEMLMPALLPAE-LWKESGR-YETYGP---NLYRLKDR--NDRDYILGPTHEETFTELIRDE 121 (572)
T ss_dssp HHHHHHHHHHHHHHTTTCEECBCCSEEETH-HHHHHSH-HHHSCT---TSCEEECT--TCCEEEECSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccccHH-HHHhcCC-ccccch---heEEEecC--CCCeEEEccccHHHHHHHHHhh
Confidence 367889999999999999999999998764 3432221 001111 23555443 234579999999988886643
Q ss_pred ----CCCCceEEEeeeEEEeCCC-CC---CCcceeEEEEEEEcCC-----CCHHHHHHHHHHHHHHhccC
Q psy9576 187 ----NKPPIKVITSGRVYRIDSD-ST---HSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d~d-~t---h~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg~ 243 (338)
...|+|++++|+|||.+.. .. ...+|+|.++-+.+.+ ..+..+..+...+++.+ |.
T Consensus 122 ~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~l-gl 190 (572)
T 2j3l_A 122 INSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERC-GL 190 (572)
T ss_dssp CCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred ccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 2469999999999999842 12 5689999999988763 12334455777888887 86
|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00017 Score=71.69 Aligned_cols=129 Identities=15% Similarity=0.122 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHH-hhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc-
Q psy9576 109 IMRTLERIEKIF-YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~-~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~- 186 (338)
.+.+.+.+++.+ ...||+|+.+|.+++.. .|..-+.- ++-.. +-|.+.......+..+||+...|+..+..+.
T Consensus 67 ~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~-l~~~sGh~-~~~~~---emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~ 141 (460)
T 3uh0_A 67 FNKLIEFMKLQQKFKFGFNEVVTPLIYKKT-LWEKSGHW-ENYAD---DMFKVETTDEEKEEYGLKPMNCPGHCLIFGKK 141 (460)
T ss_dssp HHHHHHHHHHHHHHTSCCEECCCCSEEEHH-HHHHHTCT-TTSGG---GSCEECC------CEEECSCSHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCeeccHH-HHHhcCCc-ccccc---ceEEEecCCCCCceEEEcccCcHHHHHHHHhc
Confidence 467888999999 99999999999997753 44432211 11112 3355543210134478999999988887754
Q ss_pred ----CCCCceEEEeeeEEEeCC-CC----CCCcceeEEEEEEEcCCC-C---HHHHHHHHHHHH-HHhccC
Q psy9576 187 ----NKPPIKVITSGRVYRIDS-DS----THSPMFHQIEGLWIDKNI-S---FSDLKGVYLNFI-RVFFES 243 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d~-d~----th~~~f~ql~~l~~g~~~-~---f~dLKg~l~~ll-~~lfg~ 243 (338)
...|+|++++|+|||.+. .+ ....+|+|.++-+.+..- . +..+...+..++ +.| |.
T Consensus 142 ~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~~~~e~~~~i~~~~~~~~~~l-Gl 211 (460)
T 3uh0_A 142 DRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIF-PF 211 (460)
T ss_dssp CCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHTTTS-CC
T ss_pred cccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 246999999999999994 21 156799999998776432 1 223556666777 555 86
|
| >3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00017 Score=72.37 Aligned_cols=196 Identities=11% Similarity=0.032 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCcc------CCCcceEeccchHHHHHHH
Q psy9576 111 RTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV------SNNKPLLRTHTSPMQIRYS 184 (338)
Q Consensus 111 ~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~------~~~~~~LRt~lsp~~l~~l 184 (338)
.+.+.+++.+...||+|+.+|.+.+...-...=..|.. ..+.|.+..... ..+..+||++.-+.+....
T Consensus 206 aL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f-----~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~ 280 (522)
T 3vbb_A 206 ALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQF-----DEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALH 280 (522)
T ss_dssp HHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-C-----CSCCCEEC------------CCEEECSSTHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccC-----cccceEeecCCccccccccCcceeEcccCcHHHHHHH
Confidence 45667777788899999999999776432222122221 124466643200 1223578876555444433
Q ss_pred hc-----CCCCceEEEeeeEEEeCCC--------CCCCcceeEEEEEEEcCCCC------HHHHHHHHHHHHHHhccCCC
Q psy9576 185 KI-----NKPPIKVITSGRVYRIDSD--------STHSPMFHQIEGLWIDKNIS------FSDLKGVYLNFIRVFFESDN 245 (338)
Q Consensus 185 ~~-----~~~pirifeiG~Vyr~d~d--------~th~~~f~ql~~l~~g~~~~------f~dLKg~l~~ll~~lfg~~~ 245 (338)
.. ...|+|++++|.|||.+.. -....+|.|.++.+....-. +..+....+.+++.| |. .
T Consensus 281 ~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~L-GL-p 358 (522)
T 3vbb_A 281 RDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSL-GI-P 358 (522)
T ss_dssp TTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHT-TC-C
T ss_pred hhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHc-CC-c
Confidence 22 3569999999999999842 14567899999887644322 566777788888887 85 3
Q ss_pred eeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC---------CCCe--EEEEEeechhHHH
Q psy9576 246 IQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD---------PEKY--IGFAFGSGLERLT 314 (338)
Q Consensus 246 ~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~---------~~~~--~~~afelglerla 314 (338)
..+...++-..+...+.+.||.++-.. ..+|.||..|--..---.+.++|. ..+| .+-+.++.++|+.
T Consensus 359 yrvv~l~tgdlg~~asktyDiE~w~P~-~~~y~EIsScSnc~DyqArr~~iry~~~~~~~~k~~~vhtlNgs~lav~R~l 437 (522)
T 3vbb_A 359 YHIVNIVSGSLNHAASKKLDLEAWFPG-SGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTI 437 (522)
T ss_dssp EEEEECCGGGCCTTCSEEEEEEEEETT-TTEEEEEEEEEECTTHHHHHHTCEESCC---CCCCCBCEEEEEEEEEHHHHH
T ss_pred eEEEEcCCccCCCchhheeceeEecCC-CCceeEEEEecCCCCCccceeeeEEccccccCCCeeeceEEeccchHHHHHH
Confidence 222223333222223345555433111 346999987754422223333321 0122 3345678899954
|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00021 Score=72.27 Aligned_cols=190 Identities=14% Similarity=0.134 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCC-CCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc--
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNS-PKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI-- 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~-p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~-- 186 (338)
..+.+-+++.+...||+|+.+|.+.+... +..-+. |.. ..+.|.+.+. ..+|+++.-+.+......
T Consensus 279 ~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l-~~~sG~~~~f-----~e~mf~~~~~-----~~~L~PT~E~~~~~l~~~~i 347 (536)
T 3err_A 279 LALLRFAMDFMARRGFLPMTLPSYAREKA-FLGTGHFPAY-----RDQVWAIAET-----DLYLTGTAEVVLNALHSGEI 347 (536)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEEEHHH-HHHHTCTTTT-----GGGCCEETTT-----TEEECSSTHHHHHHHTTTCE
T ss_pred HHHHHHHHHHHHHcCCEEEeccccccHHH-HHhcCCcccC-----hhhceEecCC-----CEEEccCCcHHHHHHHhccc
Confidence 45566777788889999999999977643 333322 221 1245676542 268888776665554432
Q ss_pred ---CCCCceEEEeeeEEEeCCC--------CCCCcceeEEEEEEEcCCC------CHHHHHHHHHHHHHHhccCCCeeEE
Q psy9576 187 ---NKPPIKVITSGRVYRIDSD--------STHSPMFHQIEGLWIDKNI------SFSDLKGVYLNFIRVFFESDNIQIR 249 (338)
Q Consensus 187 ---~~~pirifeiG~Vyr~d~d--------~th~~~f~ql~~l~~g~~~------~f~dLKg~l~~ll~~lfg~~~~~~r 249 (338)
...|+|++++|.|||++.. -....+|+|.+.......- .+..+....+.+++.| |. ...+.
T Consensus 348 ~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~L-gL-pyrvv 425 (536)
T 3err_A 348 LPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLL-EL-PYRLV 425 (536)
T ss_dssp EEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHT-TC-CEEEE
T ss_pred ccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHc-CC-cEEEE
Confidence 3579999999999998841 2456789999988775332 3566777788888887 85 33322
Q ss_pred EccCCCCCCCCceEEEEEee-cCCCCCCCeeEeeeeecCHHHhhhCCCC---CC---Ce--EEEEEeechhHHH
Q psy9576 250 FRPSYFPFTEPSAEIDIVFQ-DGPLKGNWLEISGAGQVNPKVLCNMNLD---PE---KY--IGFAFGSGLERLT 314 (338)
Q Consensus 250 ~~ps~fpf~~Ps~e~~i~~~-~g~~~~gwieig~~G~vhP~Vl~~~gi~---~~---~~--~~~afelglerla 314 (338)
..++-..+...+.+.||.++ -+ ..+|.||+.|---.---.+.++|. .+ +| .+-.-+++++|+.
T Consensus 426 ~~~tgdlg~~a~~~yDiE~w~p~--~~~~~Ei~s~sn~~dyqarr~~iry~~~~~k~~~vhtlngs~~a~~R~l 497 (536)
T 3err_A 426 EVATGDMGPGKWRQVDIEVYLPS--EGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRIL 497 (536)
T ss_dssp ECCTTTSCTTCSEEEEEEEEEGG--GTEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEEETHHH
T ss_pred EcCCcccCCChhheeeeeEecCC--CCCeEEEEEecCccChhhcccCeEEECCCCCeEeeeEEeccchhHHHHH
Confidence 23443333333455555433 12 246889988854422333334431 00 12 2334567889964
|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A | Back alignment and structure |
|---|
Probab=97.99 E-value=5.1e-05 Score=75.56 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=91.5
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.-.+.+.+.+++.|...||+|+.+|.+++. ..|.+=+ |-..-..+.|.++. +.+..+||+.+.++..+....
T Consensus 50 ~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~-~l~~~sg----~~~~~~~emy~~d~---~~~~l~LRP~~t~~i~~~~~~ 121 (471)
T 3a32_A 50 PIRYALAEVLAKFHARRGYYVVETPIIAST-ELFKVSG----HIEFYRNNMYLFDI---EGHEFAVKPMNCPYHILLFLN 121 (471)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCCCSEEET-HHHHHTC----CCTTGGGGSEEEEE---TTEEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeeeeh-HHhhhcc----CccccccceEEEec---CCcEEEEccccHHHHHHHHHh
Confidence 346788999999999999999999999875 3454422 21111123466632 234479999999998887643
Q ss_pred -----C---CCCceEEEeeeEEEeCC-C--CC--CCcceeEEEEEEEcCCCCH----HHHHHHHHHHHHH-hccC
Q psy9576 187 -----N---KPPIKVITSGRVYRIDS-D--ST--HSPMFHQIEGLWIDKNISF----SDLKGVYLNFIRV-FFES 243 (338)
Q Consensus 187 -----~---~~pirifeiG~Vyr~d~-d--~t--h~~~f~ql~~l~~g~~~~f----~dLKg~l~~ll~~-lfg~ 243 (338)
. ..|+|++.+|+|||.+. . .- ...+|+|.++-+.|..-.. .++..+...+++. + |.
T Consensus 122 ~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~~~de~~e~i~~~~~~l~~~l-Gl 195 (471)
T 3a32_A 122 EVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLF-KL 195 (471)
T ss_dssp HHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTS-CC
T ss_pred hhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChHHHHHHHHHHHHHHHHHHHHhh-CC
Confidence 2 57999999999999984 2 22 5789999998887754333 4477788888888 6 85
|
| >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00024 Score=70.84 Aligned_cols=166 Identities=10% Similarity=0.066 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc---
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI--- 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~--- 186 (338)
..+.+-+++.+...||+|+.+|.+.+... +..-+ |...-..+.|.+.+. ..+ .+|+++--+.+......
T Consensus 212 ~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l-~~~sG----~~~~f~e~mf~v~~~--~~~-~~L~PTaE~~l~~l~~~~i~ 283 (484)
T 3lss_A 212 VALVSYSLDFLVKRGYTPFYPPFFLNRDV-MGEVA----QLSQFDEELYQVSGD--GDK-KYLIATSEMPIAAYHRGRWF 283 (484)
T ss_dssp HHHHHHHHHHHHTTTCEEEECCSEEEHHH-HHHHS----CHHHHHHTCCEEESS--SSC-EEECSSTHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHHHcCCEEEecCccccHHH-HHhcC----CcccccccceEeecC--Ccc-eEEeccCcHHHHHHHhcccc
Confidence 45566777778889999999999977533 22222 110001134666542 122 46776644444433322
Q ss_pred --CCCCceEEEeeeEEEeCC-C-------CCCCcceeEEEEEEEcCCCC------HHHHHHHHHHHHHHhccCCCeeEEE
Q psy9576 187 --NKPPIKVITSGRVYRIDS-D-------STHSPMFHQIEGLWIDKNIS------FSDLKGVYLNFIRVFFESDNIQIRF 250 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d~-d-------~th~~~f~ql~~l~~g~~~~------f~dLKg~l~~ll~~lfg~~~~~~r~ 250 (338)
...|+|++++|.|||.+. . -...++|+|.+..+....-. +..+....+.+++.| |. ...+..
T Consensus 284 sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~L-GL-pyrvv~ 361 (484)
T 3lss_A 284 TELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSL-GL-PYRVVN 361 (484)
T ss_dssp SCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHH-TC-CEEEEE
T ss_pred chhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEE
Confidence 356999999999999884 2 13556899999887654332 566777788888888 85 332222
Q ss_pred ccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeec
Q psy9576 251 RPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQV 286 (338)
Q Consensus 251 ~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~v 286 (338)
.++-..+...+.+.||.++-.. ..+|.||..|---
T Consensus 362 l~tgdlg~~a~~~yDiE~w~P~-~~~~~EIsS~Snc 396 (484)
T 3lss_A 362 ICSGALNNAAAKKYDLEAWFPA-SGAFRELVSCSNC 396 (484)
T ss_dssp CCTTTCCSSCSEEEEEEEEETT-TTEEEEEEEEEEC
T ss_pred cCCcccCCchhheechheecCC-CCCeeEEEEecCc
Confidence 3333222223355555433111 3468899988544
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.7e-05 Score=80.50 Aligned_cols=128 Identities=13% Similarity=0.137 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCC-CcceEeccchHHHHHHHhc
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN-NKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~-~~~~LRt~lsp~~l~~l~~ 186 (338)
-.+.+.+.+|+.+...||+|+.+|.+++.. .|..=+- .++....| |.+.+. .. +..+||+...|+..+....
T Consensus 273 ~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~-l~~~sG~-~d~~~~~m---f~~~d~--~~~~~~~LrP~~~~~~~~~~~~ 345 (645)
T 1nyr_A 273 IRREIERYIVDKEVSMGYDHVYTPVLANVD-LYKTSGH-WDHYQEDM---FPPMQL--DETESMVLRPMNCPHHMMIYAN 345 (645)
T ss_dssp HHHHHHHHHHHHHHHTTEEECBCCSEEETH-HHHHHTH-HHHCTTSS---CCCEEE--TTTEEEEECSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCeeccHH-HHhhCCC-ccccccCc---ceeEec--CCCeEEEeCCCCCHHHHHHHHh
Confidence 467888999999999999999999998753 3433210 00111222 433221 12 3368999999999998754
Q ss_pred C-----CCCceEEEeeeEEEeCC-CCC----CCcceeEEEEEEEcCCC----CHHHHHHHHHHHHHHhccC
Q psy9576 187 N-----KPPIKVITSGRVYRIDS-DST----HSPMFHQIEGLWIDKNI----SFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ~-----~~pirifeiG~Vyr~d~-d~t----h~~~f~ql~~l~~g~~~----~f~dLKg~l~~ll~~lfg~ 243 (338)
+ ..|+|++++|+|||.+. .++ ...+|+|.++-+.+..- .+.++..++..+++.+ |.
T Consensus 346 ~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d~~~e~i~~~~~~l~~l-Gl 415 (645)
T 1nyr_A 346 KPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDF-GF 415 (645)
T ss_dssp SCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHT-TC
T ss_pred hhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 2 46999999999999984 332 56899999998887543 2456777888888887 86
|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00012 Score=75.75 Aligned_cols=126 Identities=10% Similarity=0.096 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc--
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI-- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~-- 186 (338)
.+.+.+.+|+.+...||+|+.+|.+++.. .|.+-+-- ++-.. +-|. ... ..+..+||+...|+..+...+
T Consensus 274 ~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~-l~~~sGh~-~~~~~---~my~-~d~--~~~~~~LrP~~~~~~~~~~~~~~ 345 (642)
T 1qf6_A 274 FRELEVFVRSKLKEYQYQEVKGPFMMDRV-LWEKTGHW-DNYKD---AMFT-TSS--ENREYCIKPMNCPGHVQIFNQGL 345 (642)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEETH-HHHHHSHH-HHHGG---GCEE-EEE--TTEEEEECSSSHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCcCccHH-HHhhcCcc-ccccc---ccee-eec--CCceEEecCCCCHHHHHHHHhhh
Confidence 46788899999999999999999998763 34331100 00011 1233 211 123368999999999888754
Q ss_pred ---CCCCceEEEeeeEEEeCCC-C----CCCcceeEEEEEEEcCCC----CHHHHHHHHHHHHHHhccC
Q psy9576 187 ---NKPPIKVITSGRVYRIDSD-S----THSPMFHQIEGLWIDKNI----SFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ---~~~pirifeiG~Vyr~d~d-~----th~~~f~ql~~l~~g~~~----~f~dLKg~l~~ll~~lfg~ 243 (338)
...|+|++++|+|||.+.. + ....+|+|.++-+.+..- .+..+...+..+++.+ |.
T Consensus 346 ~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~~~i~~~~~i~~~l-Gl 413 (642)
T 1qf6_A 346 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTF-GF 413 (642)
T ss_dssp EEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHGGG-TC
T ss_pred hhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 2469999999999999832 2 257899999998876422 2334566677777776 85
|
| >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00016 Score=72.68 Aligned_cols=196 Identities=14% Similarity=0.120 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCcc--CCCcceEeccchHHHHHHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV--SNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~--~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.+.+.+.+++.+...||+|+.+|.+.+.. .|.+ ...|-..-..+.|.+..... .++..+||+...++..+..++
T Consensus 58 ~~~L~~~~~~~~~~~Gy~eV~tP~l~~~e-l~~k---~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~ 133 (518)
T 3ial_A 58 ENAIMRLCEEEYAKVGISQILFPTVIPES-FLKK---ESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSK 133 (518)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHH-HHTS---SHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEcccccCHH-HHHh---hcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHHh
Confidence 46788889999999999999999997653 2211 00111000012355543200 023469999988888877643
Q ss_pred -----CCCCceEEEeeeEEEeCC-C---CCCCcceeEEEEEEEcCC-----CCHHHHHHHHHHHH-HHhccCCCeeEEEc
Q psy9576 187 -----NKPPIKVITSGRVYRIDS-D---STHSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFI-RVFFESDNIQIRFR 251 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d~-d---~th~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll-~~lfg~~~~~~r~~ 251 (338)
...|+|++++|+|||.+. . -....+|+|.++-..|.+ ..+..+......++ +.| |. ...+.-+
T Consensus 134 ~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~i~~~~L-Gl-p~~~~~~ 211 (518)
T 3ial_A 134 WVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDEL-CF-KGQKLRR 211 (518)
T ss_dssp HCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHTTTT-CC-CCEEEEE
T ss_pred hhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHHHHHHhc-CC-cEEeeec
Confidence 357999999999999983 2 225679999999988632 12233444456666 555 86 3333334
Q ss_pred cC--CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC---CC---CeEE-EEEeechhHHHH
Q psy9576 252 PS--YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD---PE---KYIG-FAFGSGLERLTM 315 (338)
Q Consensus 252 ps--~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~---~~---~~~~-~afelglerlam 315 (338)
|+ -++...-+..+++.+.+ +.++++|.+=-+.-+--+.+++. ++ +++- ..+|++ +|+..
T Consensus 212 ~~~e~~~gA~yt~~iE~~~pd----gr~ie~gt~~~Lg~~~s~rf~i~y~d~~g~~~~~h~~~~G~~-~R~ia 279 (518)
T 3ial_A 212 VCWDRFPGADYSEVSDVVMPC----GRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGIS-TRVLA 279 (518)
T ss_dssp CGGGCCTTCSEEEEEEEECTT----SCEEEEEEEEEEETHHHHHTTCCEECTTCCEECCEEEEEEEE-THHHH
T ss_pred ChhhccCCCccceEEEEEcCC----CCEEEEeceecccchhhhhcCcEEECCCCCEeeeEEeccchH-HHHHH
Confidence 54 23222222344555522 23567776544443444566652 10 1221 366776 88643
|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2.9e-05 Score=77.01 Aligned_cols=131 Identities=11% Similarity=0.079 Sum_probs=88.8
Q ss_pred CCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEecc---chHHHH
Q psy9576 105 GLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTH---TSPMQI 181 (338)
Q Consensus 105 ~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~---lsp~~l 181 (338)
.....+.+.+.+|+.|...||+|+.+|.+++. ..|..-+- .++-.. +.|.+.+. .....+||++ .++.+.
T Consensus 66 g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~-el~~~sg~-~d~~~~---em~~~~d~--~~~~~~LrPt~ee~t~~i~ 138 (458)
T 2i4l_A 66 GHRVLKKIEQIVREEQNRAGAIELLMPTLQLA-DLWRESGR-YDAYGP---EMLRIADR--HKRELLYGPTNEEMITEIF 138 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEH-HHHHHHTH-HHHSCT---TSEEEECT--TCCEEEECSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEcCccCcH-HHHHhcCC-cccccc---ceEEEEeC--CCCeEEECCCChHHHHHHH
Confidence 34456789999999999999999999999875 34443221 001112 33666544 2344799994 555566
Q ss_pred HHHhc--CCCCceEEEeeeEEEeC-CCC-C--CCcceeEEEEEEEcCC-----CCHHHHHHHHHHHHHHhccC
Q psy9576 182 RYSKI--NKPPIKVITSGRVYRID-SDS-T--HSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 182 ~~l~~--~~~pirifeiG~Vyr~d-~d~-t--h~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg~ 243 (338)
+.... +..|+|+|.+|+|||.+ ... - ...+|+|.++-+.|.+ ..+..+..+...+++.+ |.
T Consensus 139 r~~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~l-Gl 210 (458)
T 2i4l_A 139 RAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARM-GL 210 (458)
T ss_dssp HHHCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 65432 35799999999999998 421 2 5689999999998842 23334556677788887 85
|
| >4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00077 Score=67.86 Aligned_cols=131 Identities=11% Similarity=0.067 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccC--CCcceEeccchHHHHHHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS--NNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~--~~~~~LRt~lsp~~l~~l~~ 186 (338)
.+.+.+.+++.+...||+++.+|.+.+.. .|.+ ...|-..-..+-|++...... ++..+||+...|+..+..+.
T Consensus 64 ~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~-l~~k---~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~ 139 (519)
T 4hvc_A 64 WEAIKDFFDAEIKKLGVENCYFPMFVSQS-ALEK---EKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAK 139 (519)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHH-HHTT---SCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEeccccccHH-HHhc---ccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHh
Confidence 56788889999999999999999997653 3332 113322111233555422100 12469999988888876643
Q ss_pred -----CCCCceEEEeeeEEEeC-CCC---CCCcceeEEEEEEEcCC-----CCHHHHHHHHHHHHHHhccC
Q psy9576 187 -----NKPPIKVITSGRVYRID-SDS---THSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d-~d~---th~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg~ 243 (338)
...|+|++++|+|||.+ ... ....+|+|.++-+.+.. .-+..+......+++.++|.
T Consensus 140 ~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i~~~ll~l 210 (519)
T 4hvc_A 140 WVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAI 210 (519)
T ss_dssp HCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred hccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 24699999999999999 432 24578999998875421 12334445566666665354
|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=4.9e-05 Score=73.98 Aligned_cols=126 Identities=10% Similarity=0.103 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN- 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~- 187 (338)
.+.+.+.+++.|...||+|+.+|.+++.. .|.+-+ |-..-..+.|.++. +.+..+||+...++..+...+.
T Consensus 33 ~~~i~~~~~~~~~~~G~~ei~tP~l~~~~-l~~~sG----~~~~~~~em~~~d~---~~~~~~LrP~~~~~~~~~~~~~~ 104 (401)
T 1evl_A 33 FRELEVFVRSKLKEYQYQEVKGPFMMDRV-LWEKTG----HWDNYKDAMFTTSS---ENREYCIKPMNCPGHVQIFNQGL 104 (401)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHH-HHHHHT----HHHHSGGGCCEEEE---TTEEEEECSCSHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeeccHH-HHHhcC----cHhhhchhhEeEec---CCceEEEcCCCCHHHHHHHHhhh
Confidence 56788899999999999999999998753 344321 10000012233221 1234699999999998887542
Q ss_pred ----CCCceEEEeeeEEEeCCC-CC----CCcceeEEEEEEEcCCCC----HHHHHHHHHHHHHHhccC
Q psy9576 188 ----KPPIKVITSGRVYRIDSD-ST----HSPMFHQIEGLWIDKNIS----FSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 188 ----~~pirifeiG~Vyr~d~d-~t----h~~~f~ql~~l~~g~~~~----f~dLKg~l~~ll~~lfg~ 243 (338)
..|+|++++|+|||.+.. ++ ...+|+|.++-+.+.... +.++..+...+++.+ |.
T Consensus 105 ~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~~~~~~e~~e~i~~~~~~~~~l-gl 172 (401)
T 1evl_A 105 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTF-GF 172 (401)
T ss_dssp CBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHTT-TC
T ss_pred hhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 469999999999999842 22 578999999988764322 335777788888887 86
|
| >3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00025 Score=70.63 Aligned_cols=194 Identities=12% Similarity=0.106 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHH----h-
Q psy9576 111 RTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYS----K- 185 (338)
Q Consensus 111 ~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l----~- 185 (338)
.+.+.+++.+...||+|+.+|.+.+... +..-+ |...-..+.|.+.+. ..++.+..|+-.|...-.. +
T Consensus 190 aL~~~~~d~~~~~Gy~eV~~P~lv~~~l-~~~sG----~l~~f~eemf~v~~~--~~~~~LipTaE~pl~~l~~~ei~~S 262 (485)
T 3qne_A 190 ALINYGLSFLSSKGYVPLQAPVMMNKEV-MAKTA----QLSQFDEELYKVIDG--EDEKYLIATSEQPISAYHAGEWFES 262 (485)
T ss_dssp HHHHHHHHHHHTTTCEEEECCSEEEHHH-HHHHS----CHHHHTTTCCEEEET--TEEEEECSSTHHHHHHHTTTCEESS
T ss_pred HHHHHHHHHHHHcCCEEEeCCccccHHH-HhhcC----CccccccceEEEeCC--CCeEEEeccccHHHHHHHhcccccc
Confidence 3566777778889999999999977643 22222 110001144666532 1234555667666432111 1
Q ss_pred -cCCCCceEEEeeeEEEeCCC--------CCCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHHhccCCCeeEEEcc
Q psy9576 186 -INKPPIKVITSGRVYRIDSD--------STHSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRVFFESDNIQIRFRP 252 (338)
Q Consensus 186 -~~~~pirifeiG~Vyr~d~d--------~th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~lfg~~~~~~r~~p 252 (338)
....|+|++++|.|||.+.. -....+|.+.++...... -.+..+....+.+++.| |. ...+-..+
T Consensus 263 ~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~s~~e~e~ml~~~e~il~~L-gL-pyrvv~~~ 340 (485)
T 3qne_A 263 PAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSL-GL-PYRVVGIV 340 (485)
T ss_dssp HHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHT-TC-CEEEEECC
T ss_pred chhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHHHHHHHHHHHHHHHHHHHHC-CC-cEEEEEcC
Confidence 12359999999999999842 135668999998877432 23566777788888887 85 32222233
Q ss_pred CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC---C------CCe--EEEEEeechhHHH
Q psy9576 253 SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD---P------EKY--IGFAFGSGLERLT 314 (338)
Q Consensus 253 s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~---~------~~~--~~~afelglerla 314 (338)
+-..+...+.+.||.++-.. ..+|.||+.|--..---.+.++|. . .+| .+-+.++.+.|+.
T Consensus 341 tgdlg~~a~~tyDiE~w~P~-~~~~~Eiss~Snc~dyqArr~~iry~~~~~~~~~~~~vhtlNgt~lav~R~l 412 (485)
T 3qne_A 341 SGELNNAAAKKYDLEAWFPF-QQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTLSATERTI 412 (485)
T ss_dssp GGGCCTTCSEEEEEEEEETT-TTEEEEEEEEEECTTHHHHHTTCEECC------CCCBCEEEEEEEEEHHHHH
T ss_pred CcccCCchhhheeeeEeccC-CCceeEEEEecCCcCccccccceEEecccccCCCceeeEEEecchhHHHHHH
Confidence 33223333455555433111 346889988865533334444441 0 112 3344678899954
|
| >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0035 Score=62.90 Aligned_cols=82 Identities=12% Similarity=0.048 Sum_probs=59.1
Q ss_pred cceEeccchHHH----HHHHhc--CCCCceEEEeeeEEEeC-C-C--CCCCcceeEEEEEEEcCC--CC--HHHHHHHHH
Q psy9576 169 KPLLRTHTSPMQ----IRYSKI--NKPPIKVITSGRVYRID-S-D--STHSPMFHQIEGLWIDKN--IS--FSDLKGVYL 234 (338)
Q Consensus 169 ~~~LRt~lsp~~----l~~l~~--~~~pirifeiG~Vyr~d-~-d--~th~~~f~ql~~l~~g~~--~~--f~dLKg~l~ 234 (338)
..+||+-+.++. .+.+.. +..|++++++|+|||.+ . - -....+|+|.++-+.+.. .. +..+.....
T Consensus 182 ~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~e~~~~~~~~~i~~~~ 261 (505)
T 1ati_A 182 LAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERL 261 (505)
T ss_dssp EEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHH
T ss_pred ceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECHHHHHHHHHHHHHHHH
Confidence 358999998888 455543 46799999999999999 3 1 236789999998865432 22 667888888
Q ss_pred HHHHHhccCCCeeEEEc
Q psy9576 235 NFIRVFFESDNIQIRFR 251 (338)
Q Consensus 235 ~ll~~lfg~~~~~~r~~ 251 (338)
.+++.+ |.+...++++
T Consensus 262 ~i~~~L-Gl~~~~v~~~ 277 (505)
T 1ati_A 262 KWWQEM-GLSRENLVPY 277 (505)
T ss_dssp HHHHHT-TCCGGGEEEE
T ss_pred HHHHHc-CCCeEEEEEC
Confidence 888887 8732334444
|
| >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00041 Score=64.20 Aligned_cols=106 Identities=15% Similarity=0.064 Sum_probs=75.3
Q ss_pred HHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHh-cC-C-CCce
Q psy9576 116 IEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSK-IN-K-PPIK 192 (338)
Q Consensus 116 Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~-~~-~-~pir 192 (338)
++++|...||+++.+|.++... .|.. |.| .+. +.+...||+-++|+.+ .-. +. . .|+|
T Consensus 12 ~~~~~~~~Gy~eI~tP~le~~~-l~~~-------------d~f-~d~---~g~~l~LRpd~T~~~a-~~~~~~~~~~p~R 72 (275)
T 1usy_A 12 FYSKATKKGFSPFFVPALEKAE-EPAG-------------NFF-LDR---KGNLFSIREDFTKTVL-NHRKRYSPDSQIK 72 (275)
T ss_dssp HHHHHHHTTCEECCCCSEEECS-SCCS-------------SCE-EET---TSCEEEECCCHHHHHH-HHHTTCTTCCCEE
T ss_pred HHHHHHHCCCEEecCccccchh-hhcc-------------ccc-CCC---CCCEEEeCCcChHHHH-HHHhhcCCCCceE
Confidence 4499999999999999997642 2321 123 232 2345799999998888 222 12 4 6999
Q ss_pred EEEeeeEEEeCCCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 193 VITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 193 ifeiG~Vyr~d~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
++++|+|||.+.... .+|+|..+=+.|..--. .++-.++..+++.+ |.
T Consensus 73 ~~y~g~vfR~e~~~~--Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~l-gl 122 (275)
T 1usy_A 73 VWYADFVYRYSGSDL--VAEYQLGLEKVPRNSLDDSLEVLEIIVESASEF-FE 122 (275)
T ss_dssp EECCEEEEEEETTEE--EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHH-CC
T ss_pred EEEeceEEecCCCCC--CeeeEeCEEEecCCCchhHHHHHHHHHHHHHHc-CC
Confidence 999999999984212 89999999888865322 45666777777877 85
|
| >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0016 Score=65.45 Aligned_cols=204 Identities=19% Similarity=0.231 Sum_probs=114.3
Q ss_pred HHHHHHHHHH-HHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCc-----------------------
Q psy9576 109 IMRTLERIEK-IFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRY----------------------- 164 (338)
Q Consensus 109 ~~~~~~~Ir~-~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~----------------------- 164 (338)
.+.+.+.+++ ++...||+|+.+|.+.+.. .+.+-+ |-..-..+.|.+....
T Consensus 234 ~~~L~~~~~~e~~~~~G~~EV~tP~L~~~e-l~~~SG----h~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~ 308 (522)
T 2cja_A 234 FRTFEKIVLEELLEPLGYREMIFPKLVTWE-VWMKSG----HAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTK 308 (522)
T ss_dssp HHHHHHHHHHHTHHHHTCEECBCCSEEEHH-HHHHHT----GGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCCcccHH-HHhhcC----CcCccccceeeeecCCccchhhhhhhhhhhhcccccccc
Confidence 3456666675 4677899999999997753 444322 2111112334442100
Q ss_pred -----cCCCcceEeccchHHHHHHHhc-----CCCCceEEE-eeeEEEeCCC----CCCCcceeEEEEEEEcCCC----C
Q psy9576 165 -----VSNNKPLLRTHTSPMQIRYSKI-----NKPPIKVIT-SGRVYRIDSD----STHSPMFHQIEGLWIDKNI----S 225 (338)
Q Consensus 165 -----~~~~~~~LRt~lsp~~l~~l~~-----~~~pirife-iG~Vyr~d~d----~th~~~f~ql~~l~~g~~~----~ 225 (338)
...+..+||+.+-+++...... ...|++++. +|+|||++.. -....+|+|.++.+.+..- .
T Consensus 309 ~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~F~~pe~s~ee 388 (522)
T 2cja_A 309 LIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVWIGTKEEVLKC 388 (522)
T ss_dssp HHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEEEEEHHHHHHH
T ss_pred ccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEEEeChHHHHHH
Confidence 0123469999877776665542 246999999 9999999942 2567899999998876321 2
Q ss_pred HHHHH-HHHHHHHHHhccCCCeeEEEccCCCCCCC------------CceEEEEEee-cC--CCCCCCeeEeeeeecCHH
Q psy9576 226 FSDLK-GVYLNFIRVFFESDNIQIRFRPSYFPFTE------------PSAEIDIVFQ-DG--PLKGNWLEISGAGQVNPK 289 (338)
Q Consensus 226 f~dLK-g~l~~ll~~lfg~~~~~~r~~ps~fpf~~------------Ps~e~~i~~~-~g--~~~~gwieig~~G~vhP~ 289 (338)
+..+. .....+++.| |+ . .++. ...+|.. .....|+.++ .. . .+.|++++-|.----.
T Consensus 389 ~ee~i~~~~~~~l~~L-GL-p-~v~~--~~D~f~~a~~G~~G~~q~~a~~k~DiE~~~P~~~g-~~~~~eisS~s~~~d~ 462 (522)
T 2cja_A 389 AEELHDRYMHIFNDIL-DI-E-WRKA--RVTPWFMAQEGLLGLAEENTVGTTDYEACLPYRGP-DGEWLEFQNVSINGDK 462 (522)
T ss_dssp HHHHHHHHHHHHHHTS-CC-C-EEEE--EC----------------CCCEEEEEEECCGGGCT-TCCCEEEEEEEECTTH
T ss_pred HHHHHHHHHHHHHHHc-CC-C-EEee--ccCCccccccccccchhccccceEEEEEecccccC-CCcEEEEeeechhhhh
Confidence 23334 5556666776 86 3 3332 3334331 1233454332 21 1 2346788777543333
Q ss_pred HhhhCCCC---CCCeEEEEEeechhHHHH---HHcCCCcc
Q psy9576 290 VLCNMNLD---PEKYIGFAFGSGLERLTM---LRYGIDDL 323 (338)
Q Consensus 290 Vl~~~gi~---~~~~~~~afelglerlam---~~~~i~di 323 (338)
--+.++|. .+..-+.+.|++++|++. ..||-+|.
T Consensus 463 qarr~~Ir~~~~~~vht~~~Glgv~Rli~AlLE~~~~~~~ 502 (522)
T 2cja_A 463 YPKGFNVKLQSGDELWSGCSGVGLERWAAVFLAQKGLDPA 502 (522)
T ss_dssp HHHHHTCEETTCCCEEEEEEEEEHHHHHHHHHHHHCSCGG
T ss_pred cccccceEcCCCCEEEEeccCcHHHHHHHHHHHHcCCCCC
Confidence 33444542 111223578999999753 34666664
|
| >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.005 Score=58.57 Aligned_cols=146 Identities=13% Similarity=0.063 Sum_probs=90.0
Q ss_pred ceEeccchHHHHHHHhcC----CCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHH
Q psy9576 170 PLLRTHTSPMQIRYSKIN----KPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRV 239 (338)
Q Consensus 170 ~~LRt~lsp~~l~~l~~~----~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~ 239 (338)
.+|.+..=|.+....+.. ..|+|+.+.|.|||++ + +.....+|+|.+.++.+.. --+..+....+.+++.
T Consensus 144 ~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~~~tpEqs~~e~e~l~~~ae~il~~ 223 (346)
T 3mf2_A 144 LVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARD 223 (346)
T ss_dssp EEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEEEESHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHH
Confidence 456655444455544421 3489999999999999 4 5678889999999998742 2345567777888888
Q ss_pred hccCCCeeEEEccCCCCCCCC------------ceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCC---CC-eEE
Q psy9576 240 FFESDNIQIRFRPSYFPFTEP------------SAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDP---EK-YIG 303 (338)
Q Consensus 240 lfg~~~~~~r~~ps~fpf~~P------------s~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~---~~-~~~ 303 (338)
| |. .++.....-||... ....|+.++-.. ...|.||+-|--..---.+.++|.- +- ++.
T Consensus 224 L-gL---pyrv~~~~D~~f~~~G~l~~~~Q~~~~~kyDlevw~p~-~~~y~EisS~Sn~~dfqarR~~Ir~~~~~~vHT~ 298 (346)
T 3mf2_A 224 L-GL---TFRVDYASDPFFGRVGQMKAVSQKQQQLKFELLIPLRS-EEQPTACMSFNYHREHFGTTWGIQDANGEPAHTG 298 (346)
T ss_dssp T-TC---CCEEEECCCCCCHHHHHHHHHHHHHTTCEEEEEECSSC-SSSCEEEEEEEECTTHHHHHHTCBCTTSSBCEEE
T ss_pred C-CC---CEEEEEccCCCcCcccchhhhccccccceEEEEEEcCC-CCCeeEEEeeecccchhhhhhcceeCCCCeEEEc
Confidence 7 85 34444344454321 124555543111 2358899888765544455566631 11 233
Q ss_pred EEEeechhHHH--H-HHcCCC
Q psy9576 304 FAFGSGLERLT--M-LRYGID 321 (338)
Q Consensus 304 ~afelglerla--m-~~~~i~ 321 (338)
+.+++++|++ . --||-+
T Consensus 299 -~sglav~R~l~AiLen~G~d 318 (346)
T 3mf2_A 299 -CVAFGMDRLAVAMFHTHGTD 318 (346)
T ss_dssp -EEEEEHHHHHHHHHHHHCSC
T ss_pred -ccchHHHHHHHHHHHHcCCC
Confidence 7788999954 3 345655
|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.012 Score=61.32 Aligned_cols=54 Identities=22% Similarity=0.185 Sum_probs=42.1
Q ss_pred CCcceEeccchHHH----HHHHhc--CCCCceEEEeeeEEEeC-C---CCCCCcceeEEEEEEE
Q psy9576 167 NNKPLLRTHTSPMQ----IRYSKI--NKPPIKVITSGRVYRID-S---DSTHSPMFHQIEGLWI 220 (338)
Q Consensus 167 ~~~~~LRt~lsp~~----l~~l~~--~~~pirifeiG~Vyr~d-~---d~th~~~f~ql~~l~~ 220 (338)
....+||+-|..+. .+.+.. ...|++++++|++||++ . .-....+|+|.++-+.
T Consensus 237 ~~~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F 300 (693)
T 2zt5_A 237 NMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHF 300 (693)
T ss_dssp SSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEE
T ss_pred CcceeeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCCCCCCccceeeEEccceEE
Confidence 45579999999998 566643 36799999999999999 4 1236689999999544
|
| >3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.3 Score=48.16 Aligned_cols=108 Identities=9% Similarity=-0.067 Sum_probs=66.3
Q ss_pred ceEeccchHHHHHHHhc------CCCCceEEEeeeEEEeCC---CC----CCCcceeEEEEE-EEcCCCC---HHHHHHH
Q psy9576 170 PLLRTHTSPMQIRYSKI------NKPPIKVITSGRVYRIDS---DS----THSPMFHQIEGL-WIDKNIS---FSDLKGV 232 (338)
Q Consensus 170 ~~LRt~lsp~~l~~l~~------~~~pirifeiG~Vyr~d~---d~----th~~~f~ql~~l-~~g~~~~---f~dLKg~ 232 (338)
.+||+.|.|+.+-...+ ...|+++.++|+|||++. .+ ....+|.|+++. ++..+-+ +..+...
T Consensus 147 ~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~ 226 (459)
T 3ikl_A 147 GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRH 226 (459)
T ss_dssp TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHH
T ss_pred ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHH
Confidence 48999999998876533 257999999999999983 22 345789999984 4554322 4445556
Q ss_pred HHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeee
Q psy9576 233 YLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGA 283 (338)
Q Consensus 233 l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~ 283 (338)
...+++.| |.+...++++.. +..+.....||.+. - ..||.|+-+|
T Consensus 227 ~~~~~~~L-Gi~~~~~r~~~~--~~eeA~~~~DiE~~--~-p~G~~E~~g~ 271 (459)
T 3ikl_A 227 RLQWWRKF-AMSPSNFSSSDC--QDEEGRKGNKLYYN--F-PWGKELIETL 271 (459)
T ss_dssp HHHHHHHH-CSSGGGEEEEEE--CCSSSSCEEEEEEE--C-SSCEEEEEEE
T ss_pred HHHHHHHh-CCChhhEEEeec--CchHHHhhcCeEEE--c-CCceEEEeee
Confidence 66677777 862223554432 22223344555441 1 3478888665
|
| >4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.073 Score=54.47 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=21.4
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|--.+++|+|||+|+..|.+.||+.
T Consensus 538 phgG~a~G~dRlvml~~g~~~irdv 562 (617)
T 4ah6_A 538 PHGGIALGLDRLICLVTGSPSIRDV 562 (617)
T ss_dssp CEEEEEEEHHHHHHHHHTCSSGGGS
T ss_pred CCCceeecHHHHHHHHcCCCchheE
Confidence 3456778899999999999999985
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=90.08 E-value=0.18 Score=50.72 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=23.2
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|.-.||||+|||+|+..|.++||+.
T Consensus 495 P~gG~GlGiDRLvMlltg~~~IRdV 519 (529)
T 4ex5_A 495 PTGGCGIGIDRLVMLLTDSPTIRDV 519 (529)
T ss_dssp CEEEEEEEHHHHHHHHHTCSSGGGG
T ss_pred CCcEEEEeHHHHHHHHcCCCcHHHe
Confidence 5788999999999999999999985
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
Probab=86.12 E-value=0.43 Score=48.50 Aligned_cols=25 Identities=40% Similarity=0.522 Sum_probs=22.7
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|.-.+|||+|||+|+..|.++||+.
T Consensus 527 PhgG~glGlDRLvmlltg~~sIRdV 551 (585)
T 1c0a_A 527 PHAGLAFGLDRLTMLLTGTDNIRDV 551 (585)
T ss_dssp CEEEEEEEHHHHHHHHHTCSCGGGG
T ss_pred CceeEEEcHHHHHHHHcCCCcHHhe
Confidence 5678899999999999999999974
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 338 | ||||
| d1jjca_ | 266 | d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alph | 1e-88 | |
| d2iy5a1 | 70 | a.2.7.2 (A:15-84) Phenylalanyl-tRNA synthetase (Ph | 2e-13 |
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS species: Thermus thermophilus [TaxId: 274]
Score = 265 bits (677), Expect = 1e-88
Identities = 111/266 (41%), Positives = 160/266 (60%), Gaps = 23/266 (8%)
Query: 91 KIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHP 150
++D++LPG GGLHPI + +IF ++G+ +GPE+E++F NF ALN P++HP
Sbjct: 1 RVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHP 60
Query: 151 ARSMHDTFYIKNRYVSNNKP---------LLRTHTSPMQIRYSKINKPPIKVITSGRVYR 201
AR M DTF++ P LLRTHTSPMQ+RY + PP +++ GRV+R
Sbjct: 61 ARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVRYMVAHTPPFRIVVPGRVFR 120
Query: 202 I-DSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEP 260
+D+TH +FHQ+EGL + + I+ + LKG + F D ++RF+P YFPF EP
Sbjct: 121 FEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFGPD-SKVRFQPVYFPFVEP 179
Query: 261 SAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEK---------YIGFAFGSGLE 311
A+ + + +G WLE+ GAG V+PKV ++ E+ GFAFG G+E
Sbjct: 180 GAQFAVWWPEGG---KWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGVTGFAFGLGVE 236
Query: 312 RLTMLRYGIDDLRLFYKGNINFLKQF 337
RL MLRYGI D+R F+ G + FL+QF
Sbjct: 237 RLAMLRYGIPDIRYFFGGRLKFLEQF 262
|
| >d2iy5a1 a.2.7.2 (A:15-84) Phenylalanyl-tRNA synthetase (PheRS) {Thermus thermophilus [TaxId: 274]} Length = 70 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: tRNA-binding arm family: Phenylalanyl-tRNA synthetase (PheRS) domain: Phenylalanyl-tRNA synthetase (PheRS) species: Thermus thermophilus [TaxId: 274]
Score = 62.8 bits (153), Expect = 2e-13
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 21 ISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKINIKKELNIHRDILKK 80
+ L+ K+ YLGK G LTQ +K + + + ER++ G+ +N+IK ++ L L++
Sbjct: 1 LEELKALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAALEAALEAREKALEE 60
Query: 81 KQLKVSLK 88
LK +L+
Sbjct: 61 AALKEALE 68
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 338 | |||
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 100.0 | |
| d1jjcb5 | 207 | Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, | 99.96 | |
| d2iy5a1 | 70 | Phenylalanyl-tRNA synthetase (PheRS) {Thermus ther | 99.62 | |
| d1c0aa3 | 346 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 99.31 | |
| d1nnha_ | 293 | Hypothetical protein PF1951 {Archaeon Pyrococcus f | 99.28 | |
| d1e1oa2 | 342 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 99.19 | |
| d1eova2 | 353 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 99.17 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.16 | |
| d1b8aa2 | 335 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 98.97 | |
| d1n9wa2 | 304 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 98.9 | |
| d1z7ma1 | 318 | ATP phosphoribosyltransferase regulatory subunit H | 98.46 | |
| d1kmma2 | 322 | Histidyl-tRNA synthetase (HisRS) {Escherichia coli | 98.41 | |
| d1qe0a2 | 325 | Histidyl-tRNA synthetase (HisRS) {Staphylococcus a | 98.3 | |
| d1h4vb2 | 324 | Histidyl-tRNA synthetase (HisRS) {Thermus thermoph | 98.29 | |
| d1wu7a2 | 327 | Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop | 98.13 | |
| d1nj8a3 | 268 | Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc | 97.98 | |
| d1seta2 | 311 | Seryl-tRNA synthetase (SerRS) {Thermus thermophilu | 97.49 | |
| d1usya_ | 275 | ATP phosphoribosyltransferase regulatory subunit H | 97.45 | |
| d1nj1a3 | 265 | Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth | 97.41 | |
| d1nyra4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a | 97.26 | |
| d1qf6a4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Escherichia coli | 96.9 | |
| d1hc7a2 | 272 | Prolyl-tRNA synthetase (ProRS) {Thermus thermophil | 96.74 | |
| d1b76a2 | 331 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 96.09 | |
| d1g5ha2 | 290 | The aaRS-like accessory subunit of mitochondrial p | 95.89 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 93.16 |
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.9e-79 Score=565.37 Aligned_cols=244 Identities=45% Similarity=0.917 Sum_probs=226.6
Q ss_pred cCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCcc-----
Q psy9576 91 KIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV----- 165 (338)
Q Consensus 91 ~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~----- 165 (338)
+||+|+|+.....|+.||+++++++|+++|.+|||+|+.+|+++++++|||+||+|++||||+++|||||+++..
T Consensus 1 kiDvtlPg~~~~~G~~HPl~~~~~~i~~if~~~GF~~~~gp~ies~~~NFDaLn~P~dHPAR~~~DTfYi~~~~~~~~~~ 80 (266)
T d1jjca_ 1 RVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGP 80 (266)
T ss_dssp CCCTTSCCCCCCCCBCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTSGGGGGSCCCBEECSSCCEECT
T ss_pred CcceeCCCCCCCCCCCChHHHHHHHHHHHHHHcCCeEeeCCccccchhhhhcccCCcccchhcccceEEEecccccccCc
Confidence 489999999999999999999999999999999999999999999999999999999999999999999986521
Q ss_pred ----CCCcceEeccchHHHHHHHhcCCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 166 ----SNNKPLLRTHTSPMQIRYSKINKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 166 ----~~~~~~LRt~lsp~~l~~l~~~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
.....+||||||+++++.|.++.+|+++|++|+|||+| .|+||+|+|||++|+++|+++++.+||++++.|++++
T Consensus 81 ~~~~~~~~~lLRTHTS~~q~r~~~~~~~p~~~~~~g~VyRrd~iD~tH~p~FhQ~eg~~vd~~~~~~~Lk~~l~~~~~~~ 160 (266)
T d1jjca_ 81 LGEEVEGRLLLRTHTSPMQVRYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 160 (266)
T ss_dssp TSCEECSCEEECSSSTHHHHHHHHHSCSSEEEEEEEEEECCSCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhccCCcHHHHHHHhccCCCceEEecccceecCCCCCcccccceeeeeeeccccccHHHHHHHHHHHHHHh
Confidence 12346999999999999999999999999999999999 5999999999999999999999999999999999999
Q ss_pred ccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCC-------CCC--CCeEEEEEeechh
Q psy9576 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMN-------LDP--EKYIGFAFGSGLE 311 (338)
Q Consensus 241 fg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~g-------i~~--~~~~~~afelgle 311 (338)
||. +.++||+|+|||||+||+|++|+|. + +++|+||||||||||+||+++| +|| +.|+|||||||||
T Consensus 161 f~~-~~~~R~~p~yFPFTePS~Ev~v~~~--~-~~~WlEilG~Gmv~p~vL~~~gi~~~~~g~~~~~~~~~g~AfGlGlE 236 (266)
T d1jjca_ 161 FGP-DSKVRFQPVYFPFVEPGAQFAVWWP--E-GGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGVTGFAFGLGVE 236 (266)
T ss_dssp HCT-TCCEEEEECCCTTEEEEEEEEEEEG--G-GTEEEEEEEEEEECHHHHHHHHHHHHTTTCCCCCTTCEEEEEEEEHH
T ss_pred cCC-CcEEEEecccCCCccCCcceEEEEe--e-cCCcceEEeecccCHHHHHhcCCchhhccCCccccCCeEEEEeecHH
Confidence 885 7889999999999999999999982 2 3569999999999999999875 444 2489999999999
Q ss_pred HHHHHHcCCCcccccccCChhhhccCC
Q psy9576 312 RLTMLRYGIDDLRLFYKGNINFLKQFT 338 (338)
Q Consensus 312 rlam~~~~i~diR~~~~~d~rfl~qf~ 338 (338)
||||++|||+|||+||+||+|||+||+
T Consensus 237 RlAMl~~gI~DIR~f~~~D~rfl~QFk 263 (266)
T d1jjca_ 237 RLAMLRYGIPDIRYFFGGRLKFLEQFK 263 (266)
T ss_dssp HHHHHHHTCSCGGGTTTCCHHHHGGGG
T ss_pred HHHHHHcCCChHHHHhcCCHHHHHHhh
Confidence 999999999999999999999999995
|
| >d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=2e-28 Score=218.23 Aligned_cols=186 Identities=21% Similarity=0.326 Sum_probs=150.0
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcce
Q psy9576 92 IDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPL 171 (338)
Q Consensus 92 id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~ 171 (338)
||.++|.. ...|...| .++.++||++|+++||+|+.++.+++.. ..+.++... +.+.|.||+ ++++++
T Consensus 2 iP~~lP~~-~~~~~~~~-~~~~~~ir~~L~~~Gf~Ev~tysf~s~~-~~~~~~~~~--------~~i~l~NPi-s~e~~~ 69 (207)
T d1jjcb5 2 LPAFFPAP-DNRGVEAP-YRKEQRLREVLSGLGFQEVYTYSFMDPE-DARRFRLDP--------PRLLLLNPL-APEKAA 69 (207)
T ss_dssp CCCCCCCG-GGTTTTHH-HHHHHHHHHHHHHHTCEECCCCSEECTT-HHHHTTCCC--------CSCEESSCS-SGGGSE
T ss_pred CCCCCCCC-CCCCCChh-HHHHHHHHHHHHHCCcchhcCCCcCCHH-HHHhhcCCC--------CcEEEeCCc-chhhhh
Confidence 78889973 33455555 5788999999999999999999998875 445555432 347899996 899999
Q ss_pred EeccchHHHHHHHhc----CCCC-ceEEEeeeEEEeCCCCCCCcceeEEEEEEEcC----------CCCHHHHHHHHHHH
Q psy9576 172 LRTHTSPMQIRYSKI----NKPP-IKVITSGRVYRIDSDSTHSPMFHQIEGLWIDK----------NISFSDLKGVYLNF 236 (338)
Q Consensus 172 LRt~lsp~~l~~l~~----~~~p-irifeiG~Vyr~d~d~th~~~f~ql~~l~~g~----------~~~f~dLKg~l~~l 236 (338)
|||+++|+++++++. +.++ +++||+|+||+.+ +...+++++.|. .++|+++||+|+.+
T Consensus 70 lR~sLlpgLL~~~~~N~~r~~~~~~~lFEiG~vf~~~-------~~~~~~~~~~g~~~~~~~~~~~~~df~~~Kg~v~~l 142 (207)
T d1jjcb5 70 LRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFRER-------EETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEAL 142 (207)
T ss_dssp ECSCSHHHHHHHHHHHHHHSCCSEEEEEEEEEEESSS-------EEEEEEEEEEESCBSCTTSSCCBCHHHHHHHHHHHH
T ss_pred hhhhcchHHHHHHHhCcccccccceeeEeeeeeeecc-------ccccchhhhhhcccccccccccchhHHHHHHHHHHH
Confidence 999999999999963 3344 7999999999654 235667777763 36799999999999
Q ss_pred HHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechh
Q psy9576 237 IRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLE 311 (338)
Q Consensus 237 l~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelgle 311 (338)
+..+ |. .+++.+...|+.||+..+.|++ +|+ +||.+|+|||+|++++||+ ++++|||+|+
T Consensus 143 l~~l-g~---~~~~~~~~~~~~hpg~~a~I~~-~~~------~iG~~G~l~p~i~~~~~i~----~v~~~Ei~l~ 202 (207)
T d1jjcb5 143 FARL-GL---AFRVEAQAFPFLHPGVSGRVLV-EGE------EVGFLGALHPEIAQELELP----PVHLFELRLP 202 (207)
T ss_dssp HHHH-TC---CEEEEECCCTTEEEEEEEEEEE-SSS------EEEEEEEECHHHHHHTTCC----CCEEEEEEES
T ss_pred HHhh-hc---ccccccccCCccCCCeEEEEEE-CCe------EEEEEEEECHHHHHHcCCC----ceEEEEEeCC
Confidence 9998 84 4677788889999999999987 222 8999999999999999996 4899999985
|
| >d2iy5a1 a.2.7.2 (A:15-84) Phenylalanyl-tRNA synthetase (PheRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: tRNA-binding arm family: Phenylalanyl-tRNA synthetase (PheRS) domain: Phenylalanyl-tRNA synthetase (PheRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.62 E-value=1.6e-17 Score=122.16 Aligned_cols=70 Identities=31% Similarity=0.554 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhcCCChhHhhhhchhhHHHHHHHHHHHHHHHHHHHHhhHHHhhccc
Q psy9576 21 ISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKINIKKELNIHRDILKKKQLKVSLKTN 90 (338)
Q Consensus 21 ~~~l~~~~~~~lGkkg~l~~l~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~~~~~~~~~~~~ 90 (338)
+++|+++|++||||||.|+.+|++|+++|+|+||.+|+.+|++|+.++.+++++++.|+...++.++.+|
T Consensus 1 leeLe~~r~~~lGKkG~i~~~~k~l~~l~~eek~~~G~~lN~~K~~i~~~~~~~~~~l~~~~~~~~l~~E 70 (70)
T d2iy5a1 1 LEELKALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAALEAALEAREKALEEAALKEALERE 70 (70)
T ss_dssp CHHHHHHHHHHHHHHHHTTSTTSCTTTGGGCCTTHHHHHHHHHHHHHTHHHHHHHHHHHTTHHHHHHHHC
T ss_pred ChHHHHHHHHHhCchhHHHHHHHHHcCCCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4789999999999999999999999999999999999999999999999999999999999999888654
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=5.9e-11 Score=111.88 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
...+.+.||++|.+.||.||.+|.++.... + ...+.+...+.. ..+...||+|.--.+-+.+....
T Consensus 35 Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~~-------~------g~~~~~~~~~~~-~~~~~~L~~Spel~lk~ll~~g~ 100 (346)
T d1c0aa3 35 RAKITSLVRRFMDDHGFLDIETPMLTKATP-------E------GARDYLVPSRVH-KGKFYALPQSPQLFKQLLMMSGF 100 (346)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSSBCCCS-------S------SSCCCEEECSSS-TTCEEECCSCSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCccCCCCC-------c------cccccccccccC-CCccccCCcCHHHHHHHHhhcCC
Confidence 367899999999999999999999965311 0 111223322221 12223477764333333444433
Q ss_pred CCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 189 PPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
-+||++|+|||++ .+.+|.+||+|+++..++ +++.++...++.+++.+
T Consensus 101 --~~Vf~i~~~FR~E~~~~~H~~EFtmLE~e~a~--~~~~~~m~~~E~li~~l 149 (346)
T d1c0aa3 101 --DRYYQIVKCFRDEDLRADRQPEFTQIDVETSF--MTAPQVREVMEALVRHL 149 (346)
T ss_dssp --CEEEEEEEEECCCCCBTTBCSEEEEEEEEEES--CCHHHHHHHHHHHHHHH
T ss_pred --CceEEEeeeccccccCchhhhHhhhhcccccc--ccHhHhHHHHHHHHHHH
Confidence 3999999999999 578999999999988776 57888888888888764
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.28 E-value=3.5e-11 Score=111.00 Aligned_cols=120 Identities=15% Similarity=0.096 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
.+++...+|++|.+.||.||.+|.+++....... .|+....+.+.+... .....|+||---.+-+.|..+-
T Consensus 17 Rs~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~yL~~SPel~lk~lla~g~ 87 (293)
T d1nnha_ 17 QTKILEYMTDFFVKEGFKWLLPVIISPITDPLWP------DPAGEGMEPAEVEIY---GVKMRLTHSMILHKQLAIAMGL 87 (293)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCS------CTTCCCCCCCEEEET---TEEEEECSCSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCcccccCCCCCC------ccccCccccccccCC---CceeecccChhhhHHHHHHhcc
Confidence 4678899999999999999999988653211111 122222233333211 1114566664333233555544
Q ss_pred CCceEEEeeeEEEeCC-C---CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 189 PPIKVITSGRVYRIDS-D---STHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 189 ~pirifeiG~Vyr~d~-d---~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
. |||++|+|||.+. + ..|.|||+||++-+.. .++.|+...++.+++.++
T Consensus 88 ~--~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~--~d~~d~m~~~e~li~~~~ 140 (293)
T d1nnha_ 88 K--KIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVER--AKMEDIMRLIERLVYGLF 140 (293)
T ss_dssp C--EEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEET--CCHHHHHHHHHHHHHHHH
T ss_pred c--cceeechhhhcCcccCCCCccchhhhhhcccccc--ccHHHHHHHHHHHHHHHH
Confidence 3 9999999999863 2 3599999999977765 467888888888776654
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=99.19 E-value=5.6e-10 Score=104.73 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH--HHHhcC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI--RYSKIN 187 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l--~~l~~~ 187 (338)
.++...+|++|.+.||.||.+|.+++.. .... .+.|.+.... ......|++| |.+. +.|...
T Consensus 27 s~i~~~iR~ff~~~gFiEV~TPil~~~~---------~~~~----~~~f~~~~~~-~~~~~yL~~S--pql~~k~~l~~g 90 (342)
T d1e1oa2 27 SKILAAIRQFMVARGFMEVETPMMQVIP---------GGAS----ARPFITHHNA-LDLDMYLRIA--PELYLKRLVVGG 90 (342)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEESSC---------CSSC----CCCCEEEETT-TTEEEEECSC--SHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEEECCCccccC---------CCCC----CcceeecccC-CCcccccchh--hHHHHHHHhhhc
Confidence 5788999999999999999999986431 1111 1223221111 0112345554 5553 244444
Q ss_pred CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 188 KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
. -++|++|+|||.+ .+..|.|||+|+++-+++ +++.|+...++.+++.+
T Consensus 91 ~--~~vf~i~p~FR~E~~~~rHl~EFtmlE~e~a~--~~~~d~m~~~e~l~~~i 140 (342)
T d1e1oa2 91 F--ERVFEINRNFRNEGISVRHNPEFTMMELYMAY--ADYHDLIELTESLFRTL 140 (342)
T ss_dssp C--CEEEEEEEEECCCCCCC-CCSEEEEEEEEEES--CCHHHHHHHHHHHHHHH
T ss_pred c--cceeeeccccccccccccchHHHHHHHHHHHh--hhhhhHHHhhhHHHHHH
Confidence 3 3999999999987 477999999999999987 56788888777777654
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.17 E-value=2.1e-09 Score=101.17 Aligned_cols=110 Identities=12% Similarity=0.144 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
..++...||++|.+.||.||.+|.+++..- ..+. +.|.+.-. .....||+|.--.+-+.|..+-
T Consensus 47 Rs~i~~~iR~ff~~~gflEV~TPiL~~~~~----------eg~~---~~f~~~~~---~~~~yL~~Spel~lk~ll~~g~ 110 (353)
T d1eova2 47 QAGVCELFREYLATKKFTEVHTPKLLGAPS----------EGGS---SVFEVTYF---KGKAYLAQSPQFNKQQLIVADF 110 (353)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCS----------SSSS---CCCEEEET---TEEEEECSCTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCccCCCCC----------cchh---ccccceee---CCcceeccchhhhhhhhhhccc
Confidence 356889999999999999999999965321 1111 33433211 1114677764333345555543
Q ss_pred CCceEEEeeeEEEeC-CCC-CCCcceeEEEEEEEcCCCCHHHHHHHHHHHH
Q psy9576 189 PPIKVITSGRVYRID-SDS-THSPMFHQIEGLWIDKNISFSDLKGVYLNFI 237 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~-th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll 237 (338)
. ++|++|+|||++ .+. +|.|||+|+++..++.+ ++.++..+++.++
T Consensus 111 ~--~vf~I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d-~~~~i~~~~e~l~ 158 (353)
T d1eova2 111 E--RVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEE-HYHEVLDTLSELF 158 (353)
T ss_dssp C--EEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSS-CTHHHHHHHHHHH
T ss_pred c--cceeechhhhccccccccccchhcccccccccch-hhHHHHHHHHHHH
Confidence 3 999999999998 455 69999999999988632 2344555444444
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=99.16 E-value=1e-09 Score=103.68 Aligned_cols=113 Identities=13% Similarity=0.108 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH--HHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI--RYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l--~~l~~ 186 (338)
...+...+|++|.+.||.||.+|.+++... +. ..+.+...... ......|++| |.+. +.+..
T Consensus 43 Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~--------eg-----~~~~~~~~~~~-~~~~~yL~~S--pel~lk~ll~~ 106 (356)
T d1l0wa3 43 RHRVIKAIWDFLDREGFVQVETPFLTKSTP--------EG-----ARDFLVPYRHE-PGLFYALPQS--PQLFKQMLMVA 106 (356)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSSBCCCS--------SS-----SCCCEEECTTS-TTEEEECCSC--SHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCEEEECCccccCCC--------cc-----cccchhhhhcc-cccccCCCcC--hhHHHHHhhhc
Confidence 367889999999999999999999965411 00 01112211111 1111235554 5442 34444
Q ss_pred CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 187 NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
.. -+||++|+|||.+ .+.+|.+||+++++..++ +++.++...++.+++.++
T Consensus 107 g~--~~Vf~i~~~FRaE~~~t~H~~EFtmLE~e~~~--~~~~~~m~~~E~li~~v~ 158 (356)
T d1l0wa3 107 GL--DRYFQIARCFRDEDLRADRQPDFTQLDLEMSF--VEVEDVLELNERLMAHVF 158 (356)
T ss_dssp TC--SEEEEEEEEECCCCCCSSCCSEEEEEEEEEES--CCHHHHHHHHHHHHHHHH
T ss_pred cc--CcEEEEeccccccccCCcchhhhhHHHHhhhH--HHHHHHHHHHHHHHHHHH
Confidence 33 3999999999999 588999999999999987 567888888887776553
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=98.97 E-value=2.7e-08 Score=92.64 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
...+...||++|.+.||.||.+|.++...- ... .+.|.+... .+...||||.--.+-+.|..+.
T Consensus 37 Rs~i~~~iR~ff~~~gflEV~TPil~~~~~---------~~~----~~~f~~~~~---~~~~yL~~SpE~~lkrll~~g~ 100 (335)
T d1b8aa2 37 RSSVFKAVRDFFHENGFIEIHTPKIIATAT---------EGG----TELFPMKYF---EEDAFLAESPQLYKEIMMASGL 100 (335)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESCCC---------SSS----SSCCEEEET---TEEEEECSCSHHHHHHGGGTTC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCccCccCC---------chh----hhhcccccc---ccccccccChHHHHHHHHhhhh
Confidence 357889999999999999999999865311 111 123443332 1225677664444444555443
Q ss_pred CCceEEEeeeEEEeC-CCC-CCCcceeEEEEEEEc
Q psy9576 189 PPIKVITSGRVYRID-SDS-THSPMFHQIEGLWID 221 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~-th~~~f~ql~~l~~g 221 (338)
-++|++|+|||++ .++ .|.++|+|++..+..
T Consensus 101 --~~if~i~~~FR~e~~~~~rh~~Ef~~le~~~~~ 133 (335)
T d1b8aa2 101 --DRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAF 133 (335)
T ss_dssp --CEEEEEEEEECCCSSCCSSCCSEEEEEEEEEES
T ss_pred --hhHHHhhcccccccccccccchHHHhhhHHHHH
Confidence 4999999999998 454 588899999887764
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=98.90 E-value=2.9e-08 Score=91.17 Aligned_cols=108 Identities=11% Similarity=0.054 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHH-HHHHhcC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ-IRYSKIN 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~-l~~l~~~ 187 (338)
..++...||++|.+.||.||.+|.++... ++.++ +.|.++-- + ....|++| |.+ .+.|...
T Consensus 18 Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~--------~e~~~-----~~f~~~~~--~-~~~~L~~S--pel~k~ll~~g 79 (304)
T d1n9wa2 18 QAALVRGFRRYLDRQDFTEIFTPKVVRAG--------AEGGS-----GLFGVDYF--E-KRAYLAQS--PQLYKQIMVGV 79 (304)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCC----------------------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEECCccCCCC--------CCCCC-----ceECCccc--c-cchhcccc--HHHHHHHhhcc
Confidence 36788999999999999999999996531 11111 22333211 1 11456665 444 3444443
Q ss_pred CCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHH
Q psy9576 188 KPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFI 237 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll 237 (338)
-. +||++|+|||.+ . +.+|.++|+|+++.+... .+..++..+++.++
T Consensus 80 ~~--~if~i~~~FR~ee~~~~rh~~EF~~le~~~~~~-~~~~~~~~l~E~l~ 128 (304)
T d1n9wa2 80 FE--RVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFI-ADEEDLMRLEEALL 128 (304)
T ss_dssp HS--EEEEEEEC-------------CCEEEEEEEESC-SSHHHHHHHHHHHH
T ss_pred cc--cceeehhhcccccccccccccHHHHHHHHHhhh-hhHHHHHHHHHHHH
Confidence 22 899999999988 3 457999999999888752 22344554444433
|
| >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Lactococcus lactis [TaxId: 1358]
Probab=98.46 E-value=1.1e-06 Score=80.50 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.....+.+.++++|...||+++.+|.++.. ..|..+.-......+ .+.|.+.++ +.+..+||+-+++..+|...+
T Consensus 16 ~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~-d~~~~~~~~~~~~~~--~~~~~~~d~--~g~~l~LRpD~T~~iaR~~~~ 90 (318)
T d1z7ma1 16 KSLRQIEGRLRKLFSLKNYQEVMPPSFEYT-QLYTALESNGKTFNQ--EKMFQFIKH--EGQSITLRYDFTLPLVRLYSQ 90 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCCCSEEEH-HHHHHHHCSSSCCCT--TSCCEEECT--TCCEEEECCCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccchH-HHhhccCCCcccccc--cceeEeecC--CccEEEeeccccchHHHHHHH
Confidence 445678899999999999999999999764 345443322211111 233566555 356678999999999997754
Q ss_pred --CCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 187 --NKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
...|.|++.+|+|||.+. ...+..+|+|+.+=++|.+-.. .++-.++..+++.+ |.
T Consensus 91 ~~~~~~~r~~Y~g~vfR~~~~~~~r~rE~~Q~g~EiiG~~~~~ad~Eii~l~~e~l~~l-gi 151 (318)
T d1z7ma1 91 IKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQL-GL 151 (318)
T ss_dssp CCSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHH-TC
T ss_pred hcccCCcccccccceeEEccccccccchhhhhheeccccchhhHHHHHHHHHHHHHHHh-hh
Confidence 346899999999999984 4456779999999888865323 34666777777777 75
|
| >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=8.4e-06 Score=74.46 Aligned_cols=107 Identities=14% Similarity=0.198 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhc-CCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTAL-NSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L-~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~- 186 (338)
...+.+.++++|...||+++.+|.++.. ..|... +-..+.+.+ +.+.+.+. +.+..+||+-+++...|.+..
T Consensus 19 ~~~i~~~l~~~f~~~Gy~~I~tP~lE~~-d~~~~~~g~~~~~~~~---~~~~~~d~--~g~~l~Lr~D~T~~iaR~~~~~ 92 (322)
T d1kmma2 19 WQRIEGTLKNVLGSYGYSEIRLPIVEQT-PLFKRAIGEVTDVVEK---EMYTFEDR--NGDSLTLRPEGTAGCVRAGIEH 92 (322)
T ss_dssp HHHHHHHHHHHHHTTTCEECBCCSEEEH-HHHHHHHCTTSHHHHH---TCEEEECT--TSCEEEECSCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCeEeECcccccH-HHhhcccCcchhhhHH---HHhhhhhc--ccccccccccccchhhHHHHhh
Confidence 4577888999999999999999999764 344322 211111111 12333333 345689999999999997753
Q ss_pred ---CCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEc
Q psy9576 187 ---NKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWID 221 (338)
Q Consensus 187 ---~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g 221 (338)
...|.|++.+|.|||.+. ......+|.|+.+=++|
T Consensus 93 ~~~~~~p~r~~y~g~v~r~~~~~~gr~re~~Q~g~EiiG 131 (322)
T d1kmma2 93 GLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFG 131 (322)
T ss_dssp TCSTTCCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEES
T ss_pred hhhhhhhhhHhhcccccccCCCCCCccchhhhhhHHHhc
Confidence 246999999999999984 45567788999998888
|
| >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=98.30 E-value=1.8e-05 Score=72.34 Aligned_cols=108 Identities=14% Similarity=0.213 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc--
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI-- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~-- 186 (338)
...+.+.++++|...||+++.+|.++.. ..|....-...+..+ ...+.+..+ +....+||+..++.+.+....
T Consensus 19 ~~~i~~~l~~~f~~~Gy~~I~tP~lE~~-d~l~~~~g~~~~~~~--~~~~~~~d~--~~~~~~lr~d~t~~~~r~~~~~~ 93 (325)
T d1qe0a2 19 WRYIENQLDELMTFYNYKEIRTPIFEST-DLFARGVGDSTDVVQ--KEMYTFKDK--GDRSITLRPEGTAAVVRSYIEHK 93 (325)
T ss_dssp HHHHHHHHHHHHHHHTCEECBCCSEEEH-HHHCC-------------CCEEECHH--HHCCEEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCeEeeCcccccH-HHhccccCCchhHHH--HHHhhhhcc--ccccccccccccccHHHHHHhhc
Confidence 4677888999999999999999999754 233321111111111 122444333 234478999977777775422
Q ss_pred ----CCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEc
Q psy9576 187 ----NKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWID 221 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g 221 (338)
...|+|++.+|+|||.+. ...+..+|+|+.+=++|
T Consensus 94 ~~~~~~~p~R~~Y~g~VfR~~~~~~~~~rE~~Q~G~EiiG 133 (325)
T d1qe0a2 94 MQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIG 133 (325)
T ss_dssp GGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEES
T ss_pred cccccccchhhheecceeeeccccCCccceeeecceeecC
Confidence 236899999999999983 45567789999998888
|
| >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.29 E-value=6.1e-06 Score=75.62 Aligned_cols=130 Identities=14% Similarity=0.174 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHh-c
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSK-I 186 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~-~ 186 (338)
....+.+.++++|...||+++.+|.++... .|....-+..+..+ ...|.+..+ +.+..+||+-+++.++|.+. .
T Consensus 18 ~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d-~l~~~~g~~~~~~~--~~~~~~~d~--~g~~l~LRpD~T~~iar~~~~~ 92 (324)
T d1h4vb2 18 MHQRIVATARKVLEAAGALELVTPIFEETQ-VFEKGVGAATDIVR--KEMFTFQDR--GGRSLTLRPEGTAAMVRAYLEH 92 (324)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEGG-GGCCCSCC--------CCSCEEECT--TSCEEEECCCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCeEeeCCccccHH-HhhcccCCchhHHH--HHHhhhhcc--CCcccccccccccHHHHHHHHh
Confidence 356788999999999999999999997653 44332212222111 233555555 45668999999999999654 2
Q ss_pred ----CCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 187 ----NKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
...|.|++.+|+|||.+. ......+|+|+..=++|.+... .++..++..+++.+ |.
T Consensus 93 ~~~~~~~p~r~~Y~g~VfR~~~~~~gr~re~~Q~g~EiiG~~~~~ad~Eii~l~~~~l~~l-~~ 155 (324)
T d1h4vb2 93 GMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKEL-GL 155 (324)
T ss_dssp TGGGSSSSEEEEEEEEEECCCCC----CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHT-TC
T ss_pred hhhhhchhhhheeeCcccccCcccCCCcceeccccccccCCCChHHHHHHHHHHHHHHHHh-cc
Confidence 246899999999999983 4456788999999999865333 23455666666666 64
|
| >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.13 E-value=1.5e-05 Score=73.02 Aligned_cols=107 Identities=14% Similarity=0.209 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN- 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~- 187 (338)
...+.+.++++|...||+++.+|.++.. ..|... ..++ ....+|.+..+ +....+||+-++|...|.+.++
T Consensus 21 ~~~i~~~l~~~f~~~Gy~~I~tP~lE~~-d~~~~~-~g~~----~~~~~~~f~D~--~g~~l~LRpD~T~~iar~~~~~~ 92 (327)
T d1wu7a2 21 EKFIFKTAEEAAEAFGFRRIDFPSLEYL-DLYRIK-SGEE----LLQQTYSFVDK--GGREVTLIPEATPSTVRMVTSRK 92 (327)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEET-HHHHTT-SCTT----GGGGSCEEECT--TSCEEEECSCSHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHcCCeEeECCccchH-hhcccc-Cchh----HHHHHhhhhcc--cchhhcccccccchhhhHhhhhh
Confidence 4567888999999999999999999754 334321 1111 11345766666 3566899999999999987542
Q ss_pred --CCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCC
Q psy9576 188 --KPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKN 223 (338)
Q Consensus 188 --~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~ 223 (338)
..|.|+|..|+|||.+. ...+..+|+|+.+=+.|.+
T Consensus 93 ~~~~p~k~~y~g~VfR~~~~~~g~~re~~Q~G~EiiG~~ 131 (327)
T d1wu7a2 93 DLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSD 131 (327)
T ss_dssp TCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCC
T ss_pred hccccceeeccCcceeccccccCCcchhhhhhhhhcCCc
Confidence 35899999999999884 4556779999999999854
|
| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Probab=97.98 E-value=0.00015 Score=64.54 Aligned_cols=197 Identities=16% Similarity=0.208 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCC--ccCCCcceEeccchHHHHHHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNR--YVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np--~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.+++.+.+++.+...||++|.+|.+.+... +.+= ..|..-...+-+.+... ....+..+||+..-|+.....+.
T Consensus 38 ~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l-~~ks---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~P~~~~~~~~i~~~ 113 (268)
T d1nj8a3 38 RRYTFEIIRNLLDESGHDEALFPMLIPEDL-LAKE---AEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKL 113 (268)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHH-HHHH---CSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCeEEeehhhhhhHh-hhcc---CCCccccccceeEEeccccccchhhhhcccCCCchhHHhhhh
Confidence 467788899999999999999999876532 2211 11211111111222211 00123369999998988887754
Q ss_pred -----CCCCceEEEeeeEEEeCC-C---CCCCcceeEEEEEEE-cCC-----CCHHHHHHHHHHHHHHhccCCCeeEEEc
Q psy9576 187 -----NKPPIKVITSGRVYRIDS-D---STHSPMFHQIEGLWI-DKN-----ISFSDLKGVYLNFIRVFFESDNIQIRFR 251 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d~-d---~th~~~f~ql~~l~~-g~~-----~~f~dLKg~l~~ll~~lfg~~~~~~r~~ 251 (338)
+..|+|++++|.|||.+. . -....+|+|++..++ ..+ ..+..+......++..+ |. ...+.-.
T Consensus 114 ~~~Syr~LP~r~~e~~~~fR~E~~~~~GllR~reF~~~dd~~~~~~~~~~~~~~~~~~~~~y~~if~~l-~l-~~~~~~~ 191 (268)
T d1nj8a3 114 WVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTL-GI-PYLISKR 191 (268)
T ss_dssp TCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH-TC-CCEEEEE
T ss_pred hccchhhhheEEeeccccccccccccccceeEEEEeeechhceeccccchhhHHHHHHHHHHHHHHHhc-Cc-ceeeccc
Confidence 357999999999999994 2 235667876665432 221 33555666666777777 75 2222222
Q ss_pred cC--CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC-----CCC-e-EEEEEeechhHHHHH
Q psy9576 252 PS--YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD-----PEK-Y-IGFAFGSGLERLTML 316 (338)
Q Consensus 252 ps--~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~-----~~~-~-~~~afelglerlam~ 316 (338)
++ ..+.......+.... . .+.++|++.+=.+....-+++|+. .++ + --..+|++ +|+...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~--~--~g~~~e~~t~~~lg~~~s~~f~l~y~~~dg~~~~~h~~~~G~~-eR~ia~ 260 (268)
T d1nj8a3 192 PEWDKFPGAEYTMAFDTIF--P--DGRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGIS-DRVIAS 260 (268)
T ss_dssp CTTSCCTTCSEEEEEEEEC--T--TSCEEEEEEEEEEETHHHHHTTCEEECTTSSEEECEEEEEEEC-THHHHH
T ss_pred cccccccchhcccchhhhh--h--ccccEEEeeecccCCCcChhcCCEEECCCCCCcceeeccCcHH-HHHHHH
Confidence 22 222222222233222 1 234678888766777777888883 111 0 12567888 887654
|
| >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Seryl-tRNA synthetase (SerRS) species: Thermus thermophilus, strain hb27 [TaxId: 274]
Probab=97.49 E-value=0.0035 Score=56.81 Aligned_cols=173 Identities=13% Similarity=0.088 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc---
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI--- 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~--- 186 (338)
..+++-+.+.+...||+++..|.+..... +..-+..+.. ..|.+.+.+.. ..|+++-=+.+.-....
T Consensus 60 ~AL~~~~ld~~~~~gy~~v~~P~lv~~~~-~~~~G~~p~f----~~~~y~~~~~~-----~~LipTsE~~l~~~~~~~i~ 129 (311)
T d1seta2 60 LALLRFAMDFMARRGFLPMTLPSYAREKA-FLGTGHFPAY----RDQVWAIAETD-----LYLTGTAEVVLNALHSGEIL 129 (311)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEEEHHH-HHHHTCTTTT----GGGSCBBTTSS-----EEECSSTHHHHHHTTTTCEE
T ss_pred HHHHHHHHHhhhcccceEEeechhhccch-hhhccccccc----ccccccccccc-----eeecccccchhhhhhhhhhh
Confidence 34567777888899999999999987754 4444333221 12445554431 57775544434332222
Q ss_pred --CCCCceEEEeeeEEEeCC-C-------CCCCcceeEEEEEEEc-C--C---CCHHHHHHHHHHHHHHhccCCCeeEEE
Q psy9576 187 --NKPPIKVITSGRVYRIDS-D-------STHSPMFHQIEGLWID-K--N---ISFSDLKGVYLNFIRVFFESDNIQIRF 250 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d~-d-------~th~~~f~ql~~l~~g-~--~---~~f~dLKg~l~~ll~~lfg~~~~~~r~ 250 (338)
...|+|++..++|||++. . --..++|.+++..++- . . --+.++....+.+++.| |. ...+..
T Consensus 130 ~~~~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~~~~~L-~l-pyrvv~ 207 (311)
T d1seta2 130 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLL-EL-PYRLVE 207 (311)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHT-TC-CEEEEE
T ss_pred hhhhccceEEeecccchhhhccccccchhhhhhcccchhhhheeeccccccchhHHHHHHHHHHHHHHhh-CC-cchhcc
Confidence 357999999999999983 1 1334688888876542 1 1 23678888999999998 85 333333
Q ss_pred ccCCCCCCCCceEEEEEee-cCCCCCCCeeEeeeeecCHHHhhhCCC
Q psy9576 251 RPSYFPFTEPSAEIDIVFQ-DGPLKGNWLEISGAGQVNPKVLCNMNL 296 (338)
Q Consensus 251 ~ps~fpf~~Ps~e~~i~~~-~g~~~~gwieig~~G~vhP~Vl~~~gi 296 (338)
.++-.-+.-.....||..+ .+ .+.|.||+.|--..--..+.++|
T Consensus 208 ~~~~dl~~~a~~~~diE~w~P~--~~~y~Ev~S~sn~~d~qsrRl~i 252 (311)
T d1seta2 208 VATGDMGPGKWRQVDIEVYLPS--EGRYRETHSCSALLDWQARRANL 252 (311)
T ss_dssp CCTTTSCTTCSEEEEEEEEEGG--GTEEEEEEEEEECTTHHHHHHTC
T ss_pred ccCCCCchHHHhhhHHHHhHhh--cCCcccccCceecchHHHhhccc
Confidence 4443222222345555443 22 23588999877777666667766
|
| >d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Thermotoga maritima [TaxId: 2336]
Probab=97.45 E-value=0.00071 Score=60.18 Aligned_cols=107 Identities=17% Similarity=0.120 Sum_probs=75.6
Q ss_pred HHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC--CCCceE
Q psy9576 116 IEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN--KPPIKV 193 (338)
Q Consensus 116 Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~--~~piri 193 (338)
........||+++.+|.++... .. .+.++.+.. ....+||+-+++..+|...++ ..|.|+
T Consensus 12 f~~~~~~~Gy~~i~tP~~E~~e-----------~~----~~~~F~D~~---g~~l~LRpD~T~~iaR~~~~~~~~~p~k~ 73 (275)
T d1usya_ 12 FYSKATKKGFSPFFVPALEKAE-----------EP----AGNFFLDRK---GNLFSIREDFTKTVLNHRKRYSPDSQIKV 73 (275)
T ss_dssp HHHHHHHTTCEECCCCSEEECS-----------SC----CSSCEEETT---SCEEEECCCHHHHHHHHHTTCTTCCCEEE
T ss_pred HHHHHHHcCCceeecCcccccc-----------cc----ccceeEcCC---CCEEEECCCCcHHHHHHHHHcCCCCCeee
Confidence 4556668999999999997532 11 122344433 345789999999999977653 458999
Q ss_pred EEeeeEEEeCCCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 194 ITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 194 feiG~Vyr~d~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
|.+|+|||.+. ....+|+|+.+=+.|.+-.. .++-.++..+++.+ |.
T Consensus 74 ~Y~g~VfR~~~--~~~re~~Q~G~EiiG~~~~~aD~Evi~l~~~~l~~l-gi 122 (275)
T d1usya_ 74 WYADFVYRYSG--SDLVAEYQLGLEKVPRNSLDDSLEVLEIIVESASEF-FE 122 (275)
T ss_dssp ECCEEEEEEET--TEEEEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHH-CC
T ss_pred eEEeeEEEeCC--CcccceeecCceeechhhHHHHHHHHHHHHHHHHhh-cc
Confidence 99999999863 24568899988888864323 34566666777777 74
|
| >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Probab=97.41 E-value=0.0023 Score=56.25 Aligned_cols=196 Identities=11% Similarity=0.147 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCc--cCCCcceEeccchHHHHHHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRY--VSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~--~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
...+.+-+++.+ ..||+++.+|.+.+...-... ..|..--..+.|.+.... ...+..+||++.=|+....++.
T Consensus 36 ~~~i~~~~~~~~-~~G~~ev~~P~l~~~~~l~~~----sgh~~~~~~e~f~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~ 110 (265)
T d1nj1a3 36 RKNTLKILRRIL-DRDHEEVLFPLLVPEDELAKE----AIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFAL 110 (265)
T ss_dssp HHHHHHHHHHHH-TTTCEECCCCSEEEHHHHTTS----HHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhcCceehhhhhhhhhhhhhc----ccccccccccceeeeccCccccceeEEeecccccceEEeeee
Confidence 445667777765 459999999987544211110 011000001234443210 0122358999988888887753
Q ss_pred -----CCCCceEEEeeeEEEeCC----CCCCCcceeEEEEEEE-cC-----CCCHHHHHHHHHHHHHHhccCCCeeEEEc
Q psy9576 187 -----NKPPIKVITSGRVYRIDS----DSTHSPMFHQIEGLWI-DK-----NISFSDLKGVYLNFIRVFFESDNIQIRFR 251 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d~----d~th~~~f~ql~~l~~-g~-----~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ 251 (338)
+..|+|++++|.|||.+. .-....+|+|++.... .. ...+..+......++..+ |. .......
T Consensus 111 ~~~SyrdLPlr~~q~~~~fR~E~~~~~Gl~R~reF~~~~d~~~~~~~~~~~~~e~~~~~~~~~~~~~~l-~l-~~~~~~~ 188 (265)
T d1nj1a3 111 WVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSL-GI-PYLITRR 188 (265)
T ss_dssp HCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH-TC-CCEEEEC
T ss_pred eeccccccceEEEeeccceeeecccCcCCEEEEEEEEeccceeecCCHHHHHHHhhhhHHHHHHHHhhc-CC-ceeEEEc
Confidence 457999999999999994 2335678887765543 21 134556666777777777 75 2322223
Q ss_pred cCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC-----CCCeE--EEEEeechhHHH
Q psy9576 252 PSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD-----PEKYI--GFAFGSGLERLT 314 (338)
Q Consensus 252 ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~-----~~~~~--~~afelglerla 314 (338)
++..-+.....+.++... .. .+.+++++.+=-+.=.--+++||. .+... ...+|++ +|+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~-~~-~g~~~e~~~~~~lg~~~s~~f~i~y~d~~g~~~~~h~~~~G~~-eR~i 255 (265)
T d1nj1a3 189 PPWDKFPGSEYTVAFDTL-MP-DGKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLS-DRVI 255 (265)
T ss_dssp CTTTSCTTCSEEEEEEEE-CT-TSCEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEC-THHH
T ss_pred cCcccccccccccchhhc-cc-ccccceecchhhcchhhHHhcCCEEECCCCCEEEEEEecccHH-HHHH
Confidence 332222222344443321 11 233567774432322333455652 11111 1366777 7764
|
| >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=97.26 E-value=0.00042 Score=62.49 Aligned_cols=128 Identities=13% Similarity=0.096 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc--
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI-- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~-- 186 (338)
.+.+.+-+++.+...||+||.+|.+.+...-...=..|.. .. +.+.+.... +.+..+||++.=|......+.
T Consensus 33 ~~~L~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sG~~~~~--~~---~~~~~~~~~-~~~~~~L~pt~e~~~~~~~~~~~ 106 (291)
T d1nyra4 33 RREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHY--QE---DMFPPMQLD-ETESMVLRPMNCPHHMMIYANKP 106 (291)
T ss_dssp HHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHC--TT---SSCCCEEET-TTEEEEECSSSHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHcCCEEEECccccchhHhhhhcccccc--cc---ceEEEeecc-ccccccccccchhHHHHhhhcEe
Confidence 4677888999999999999999999876332111000100 01 223222110 123468999988887776643
Q ss_pred ---CCCCceEEEeeeEEEeCC-CC----CCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHHhccC
Q psy9576 187 ---NKPPIKVITSGRVYRIDS-DS----THSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ---~~~pirifeiG~Vyr~d~-d~----th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~lfg~ 243 (338)
...|+|++++|.|||++. .. ....+|+|.++...... --+..+...+..+++.+ |.
T Consensus 107 ~sy~dLPlr~~~~~~~fR~E~~~~~~Gl~Rvr~F~~~d~~~f~~~eq~~~e~~~~~~~~~~i~~~l-Gl 174 (291)
T d1nyra4 107 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDF-GF 174 (291)
T ss_dssp CBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHT-TC
T ss_pred ccccccceEEeeccceeecCCCcccccccceeeeeeeeheeecCCcccHHHHHHHHHHHHHHhhhc-Cc
Confidence 357999999999999993 22 35678999998776431 22455666677777777 85
|
| >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.0033 Score=56.37 Aligned_cols=126 Identities=10% Similarity=0.097 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc--
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI-- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~-- 186 (338)
.+.+.+-+++.+...||+||.+|.+.+.. .+..=+ |-..-..+.+.+... .+..+||++.=|......++
T Consensus 33 ~~~L~~~i~e~~~~~G~~eV~~P~L~~~~-l~~~sG----~~~~~~~~~~~~~~~---~~~~~L~Pt~e~~~~~~~~~~~ 104 (291)
T d1qf6a4 33 FRELEVFVRSKLKEYQYQEVKGPFMMDRV-LWEKTG----HWDNYKDAMFTTSSE---NREYCIKPMNCPGHVQIFNQGL 104 (291)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEETH-HHHHHS----HHHHHGGGCEEEEET---TEEEEECSSSHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHcCCEEEEcccccchh-HHhhhc----hhhhccchhcccccc---chhhcccccCcHHHHHHHHccc
Confidence 46788889999999999999999997762 222111 000000122333322 23368999988888777753
Q ss_pred ---CCCCceEEEeeeEEEeC-CC----CCCCcceeEEEEEEEcCCC----CHHHHHHHHHHHHHHhccC
Q psy9576 187 ---NKPPIKVITSGRVYRID-SD----STHSPMFHQIEGLWIDKNI----SFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ---~~~pirifeiG~Vyr~d-~d----~th~~~f~ql~~l~~g~~~----~f~dLKg~l~~ll~~lfg~ 243 (338)
...|+|+++++.|||.+ .. -....+|+|.++......- .++++-..+..+++.+ |.
T Consensus 105 ~sy~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~f~~~e~~~~e~~~~~~~~~~i~~~l-Gl 172 (291)
T d1qf6a4 105 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTF-GF 172 (291)
T ss_dssp EEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHGGG-TC
T ss_pred cchhhcCeeEeecceeeecccccccccccccccceeccceeEecchhhHHHHHHHHHHHHHHHHHc-CC
Confidence 45799999999999998 32 2356789999988775321 2334444555566666 75
|
| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Thermus thermophilus [TaxId: 274]
Probab=96.74 E-value=0.035 Score=48.04 Aligned_cols=194 Identities=11% Similarity=0.037 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceee-cCCc--cCCCcceEeccchHHHHHHHh
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYI-KNRY--VSNNKPLLRTHTSPMQIRYSK 185 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i-~np~--~~~~~~~LRt~lsp~~l~~l~ 185 (338)
.+.+.+-+++.+...||++|.+|.+.+.. .+..-+ .|+.. ..+.++. .... ...+..+||++.-|......+
T Consensus 43 ~~~l~~~~~~~~~~~G~~eV~~P~l~~~~-l~~~sg---~~~~~-~~~~m~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~ 117 (272)
T d1hc7a2 43 WENIQQVLDRMFKETGHQNAYFPLFIPMS-FLRKEA---EHVEG-FSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWS 117 (272)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEST-TC-------------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEeeccccchH-Hhhhcc---cchhh-cccceeeeeccccccccchhhcccccccceeehhh
Confidence 46778888888999999999999876542 222211 12211 1122332 1110 012336999998888877664
Q ss_pred c-----CCCCceEEEeeeEEEeCC-C--CCCCcceeEEEEEEE--cC---CCCHHHHHHHHHHHHHHhccCCCeeEEEcc
Q psy9576 186 I-----NKPPIKVITSGRVYRIDS-D--STHSPMFHQIEGLWI--DK---NISFSDLKGVYLNFIRVFFESDNIQIRFRP 252 (338)
Q Consensus 186 ~-----~~~pirifeiG~Vyr~d~-d--~th~~~f~ql~~l~~--g~---~~~f~dLKg~l~~ll~~lfg~~~~~~r~~p 252 (338)
. ...|+|++++|.+||.+. . ..-..+|.+...-.. .+ ...+.+.......++..+... ......+
T Consensus 118 ~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 195 (272)
T d1hc7a2 118 KWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAI--PVIEGLK 195 (272)
T ss_dssp HHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHCC--CCEEEEC
T ss_pred ceeccccccceeeeecccccccccccccccceEEEEEEhhhhhhcccccchhHHHHHHHHHHHHHHHhcch--hhhcCcc
Confidence 3 468999999999999983 2 122334443333332 21 123444444555555554221 1111111
Q ss_pred ---CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC----CCC-eE--EEEEeechhHHH
Q psy9576 253 ---SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD----PEK-YI--GFAFGSGLERLT 314 (338)
Q Consensus 253 ---s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~----~~~-~~--~~afelglerla 314 (338)
..++... ...++.+..+ .+..+|+|.|--+...--+.+||. ..+ .. ...+|++ +|+.
T Consensus 196 ~~~~~~~~~~--~~~~~~~~~~--~~r~~Ev~t~~~l~~~~s~r~~i~Y~d~dg~~~~vH~~~~G~~-eR~i 262 (272)
T d1hc7a2 196 TEKEKFAGAV--YTTTIEALMK--DGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLS-WRFI 262 (272)
T ss_dssp CTTTSCTTSS--EEEEEEEECT--TSCEEEEEEEEEEETHHHHHTTCEEECTTSCEEECEEEEEEEE-THHH
T ss_pred cccccccccc--eecccccccc--CCCCEEcccceecccccchhcCCEEECCCCCEEEEEEccccHH-HHHH
Confidence 1222211 2222221111 223569988877777777888872 111 11 2466776 6754
|
| >d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=96.09 E-value=0.1 Score=46.97 Aligned_cols=111 Identities=12% Similarity=-0.022 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHh--hCCCeEeeCCccccchhhhhhcC---------CC--CCCC---CCcCccceeecC-C-ccCCCcce
Q psy9576 110 MRTLERIEKIFY--SIGFDITDGPEIETDFNNFTALN---------SP--KNHP---ARSMHDTFYIKN-R-YVSNNKPL 171 (338)
Q Consensus 110 ~~~~~~Ir~~~~--~~GF~Ev~~~~l~~~~~nf~~L~---------~p--~~hp---ar~~~dt~~i~n-p-~~~~~~~~ 171 (338)
+.+.+.+|+.|+ +-|+.|+.+|.+.+.. .+.+=+ ++ ..++ .+....-+...- + ....+...
T Consensus 43 ~~i~~~wr~~~v~~~~~~~ev~tp~i~~~~-lw~~SGH~~~f~d~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (331)
T d1b76a2 43 NNLKQAWWRRNVYERDDMEGLDASVLTHRL-VLHYSGHEATFADPMVDNAKARYWTPPRYFNMMFQDLRGPRGGRGLLAY 121 (331)
T ss_dssp HHHHHHHHHHHTTSCSSEEEEBCCSEEEHH-HHHHTSHHHHCEEEECBSSSCBCCCCCEEEECCEEEECSSSCCGGGEEE
T ss_pred HHHHHHHHHHHHhccCCeEEEeccccCChH-HhccCccccccCCceeeecccccccCccchhhccccccccccccCCccc
Confidence 456666676664 5799999999987652 222100 00 0000 000000011000 0 00234457
Q ss_pred EeccchHHHHHHH------hcCCCCceEEEeeeEEEeC-C---CCCCCcceeEEEEEEEc
Q psy9576 172 LRTHTSPMQIRYS------KINKPPIKVITSGRVYRID-S---DSTHSPMFHQIEGLWID 221 (338)
Q Consensus 172 LRt~lsp~~l~~l------~~~~~pirifeiG~Vyr~d-~---d~th~~~f~ql~~l~~g 221 (338)
||+-|-++..-.+ +.+..|++++++|+|||++ + ......+|+|.++-+--
T Consensus 122 lr~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~s~~~gl~RvReFtq~D~~~F~ 181 (331)
T d1b76a2 122 LRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFV 181 (331)
T ss_dssp ECSCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCSSCCTTTTSCSEEEEEEEEEEE
T ss_pred ccCcchhhHHHHHHhHHhccccccchhhhhccceecccccccccccccchhhhhhhhhhc
Confidence 8888777664333 3357899999999999998 3 24566789998887654
|
| >d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.89 E-value=0.011 Score=52.75 Aligned_cols=109 Identities=10% Similarity=-0.042 Sum_probs=67.1
Q ss_pred ceEeccchHHHHHHH------hcCCCCceEEEeeeEEEeC-CC------CCCCcceeEEEEEEEcC----CCCHHHHHHH
Q psy9576 170 PLLRTHTSPMQIRYS------KINKPPIKVITSGRVYRID-SD------STHSPMFHQIEGLWIDK----NISFSDLKGV 232 (338)
Q Consensus 170 ~~LRt~lsp~~l~~l------~~~~~pirifeiG~Vyr~d-~d------~th~~~f~ql~~l~~g~----~~~f~dLKg~ 232 (338)
..||+-|.++..-.. .++..|+++.++|+|||++ +. -....+|.|++.-+.=+ +--+......
T Consensus 113 ~yLRPetaqg~~~~fkn~~~~~~~~LPf~iaq~g~~fR~E~~~~~~~~gl~RvReF~q~E~~~F~~pe~~~~~~~~~~~~ 192 (290)
T d1g5ha2 113 GKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRH 192 (290)
T ss_dssp CEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred ceeccccchhHHHHHHHHHhhccCCCCcEEEEeccccccccccCCcccccceeeEeEeeeeEEEeCCcchHHHHHHHHHH
Confidence 579999999875432 2356899999999999965 21 22356899999877532 1225666777
Q ss_pred HHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeee
Q psy9576 233 YLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAG 284 (338)
Q Consensus 233 l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G 284 (338)
...+++.+ |.+...++++..-..+ ....+|+.+. . .-||.|+-++-
T Consensus 193 ~~~~~~~l-Gi~~~~~~~~~~~~~~--a~~~~die~~-~--p~g~~Ei~g~~ 238 (290)
T d1g5ha2 193 RLLWWRKF-AMSPSNFSSADCQDEL--GRKGSKLYYS-F--PWGKEPIETLW 238 (290)
T ss_dssp HHHHHHTT-CSSGGGEEEEEEECTT--SCEEEEEEEE-E--TTEEEEEEEEE
T ss_pred HHHHHHHc-CCChhheeecccchhh--cccceeeEEc-C--CCCEEEEEEec
Confidence 77788887 8733345554322112 2344555441 1 24687876653
|
| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=93.16 E-value=0.23 Score=45.63 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=68.0
Q ss_pred cceEeccchHHHHH----HH--hcCCCCceEEEeeeEEEeCCC----CCCCcceeEEEEEEE-cCCCC---HHHHHHHHH
Q psy9576 169 KPLLRTHTSPMQIR----YS--KINKPPIKVITSGRVYRIDSD----STHSPMFHQIEGLWI-DKNIS---FSDLKGVYL 234 (338)
Q Consensus 169 ~~~LRt~lsp~~l~----~l--~~~~~pirifeiG~Vyr~d~d----~th~~~f~ql~~l~~-g~~~~---f~dLKg~l~ 234 (338)
..+||+-|.-++.- ++ .++..|.-+..+|++||++.. --.+.||.|++.-+- +.+-. +..-.+...
T Consensus 182 ~~yLRPETAQGiFvnF~~~l~~~r~KlPFGiAQIGk~FRNEIsPr~~l~R~REF~q~EiE~Fv~P~~~~~~~~yw~~~~~ 261 (394)
T d1atia2 182 LAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERL 261 (394)
T ss_dssp EEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHH
T ss_pred eeEEChhhhhHHHHHHHHHHHHcccCCCceeeeeccccccccCcccCCcccccceeeeeEEEEeCCcchHHHHHHHHHHH
Confidence 35899999877742 22 245789999999999999942 345678998887553 33221 222333344
Q ss_pred HHHHHhccCCCeeEEEccC---CCCCCCCceEEEEEeecCCCCCCCeeEeeee
Q psy9576 235 NFIRVFFESDNIQIRFRPS---YFPFTEPSAEIDIVFQDGPLKGNWLEISGAG 284 (338)
Q Consensus 235 ~ll~~lfg~~~~~~r~~ps---~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G 284 (338)
.++..+ |.+...+||+.. ... .....+.|+.+. - .-||+|+-|+-
T Consensus 262 ~f~~~l-Gi~~~~lrfrqh~~~ElA-HYa~~~~DiE~~--f-p~Gw~El~GiA 309 (394)
T d1atia2 262 KWWQEM-GLSRENLVPYQQPPESSA-HYAKATVDILYR--F-PHGSLELEGIA 309 (394)
T ss_dssp HHHHHT-TCCGGGEEEEECCTTTSC-TTCSEEEEEEEE--E-TTEEEEEEEEE
T ss_pred HHHHHh-cCCccceeEEeecchhhh-hcccceEEEEEe--c-CCCcEechhhh
Confidence 556676 874445777653 222 113356666551 1 34899987654
|