Psyllid ID: psy9585

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MTDNHFVHKKRSNVLTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENGK
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHcccccHHHHHHHcccccHHHHHHHHHHcHHHHHHHHccccccEEccccccccccHHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEcccccccccHHHHHHHHHccccccEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccHHcccHHHHHHHHHcccHHHHHHHHcccHHHHHHHccHHHccEEEcccccccccHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccEEEcccccccccccc
Coil and Loop (DISEMBL)
mtdnhfvhkkrsnvltrVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILAldgsnwsridlfnfqtdvegpvlenISRRCGGFLRqislrgcqsmtdNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENGK
Flexible Loop (DISEMBL)
mtdnhfvhkkrsnvltrvfledealinkklpkeLLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLthiniswcinitengk
Low Complexity Region (SEG)
MTDNHFVHKKRSNVLTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENGK
Disordered region (IsUnstruct)
***********SNVLTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT****
Disordered Region (DISOPRED)
MTDNHF*HKKR*******FLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITE***
Disordered Region (DISEMBL)
********KKRSNVLTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENGK
Disordered Region (DISPRO)
*****FVHKK*******VFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTDNHFVHKKRSNVLTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
Q9UKC9	423	F-box/LRR-repeat protein	yes	N/A	0.878	0.392	0.676	7e-64
A6H779	423	F-box/LRR-repeat protein	yes	N/A	0.878	0.392	0.670	2e-63
Q5R3Z8	423	F-box/LRR-repeat protein	yes	N/A	0.878	0.392	0.670	4e-63
Q8BH16	423	F-box/LRR-repeat protein	yes	N/A	0.867	0.387	0.658	4e-63
Q96IG2	436	F-box/LRR-repeat protein	no	N/A	0.878	0.380	0.676	2e-62
Q58DG6	436	F-box/LRR-repeat protein	no	N/A	0.878	0.380	0.676	2e-62
Q9CZV8	436	F-box/LRR-repeat protein	no	N/A	0.878	0.380	0.670	6e-62
Q9QZH7	276	F-box/LRR-repeat protein	no	N/A	0.878	0.601	0.670	7e-62
P34284	466	Uncharacterized F-box/LRR	yes	N/A	0.873	0.354	0.520	9e-50
Q9UF56	701	F-box/LRR-repeat protein	no	N/A	0.835	0.225	0.341	6e-19

>sp|Q9UKC9|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3

 Score =  243 bits (619), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 113/167 (67%), Positives = 140/167 (83%)

Query: 22  DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
           DE LINKKLPKELLLRIFS+LD+ +LCRCAQ+SKAWNILALDGSNW RIDLFNFQTDVEG
Sbjct: 7   DEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNFQTDVEG 66

Query: 82  PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
            V+ENIS+RCGGFLR++SLRGC  + D+SL   AQ C N+E +NLN C K+TD+T  +LS
Sbjct: 67  RVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLS 126

Query: 142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           + C+KL+ LDL SC  IT+ SLK +++GCRNL ++N+SWC  IT++G
Sbjct: 127 RFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDG 173

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Binds to hepatitis C virus non-structural protein 5A (NS5A) in a reaction crucial for hepatitis C virus RNA replication.
Homo sapiens (taxid: 9606)

>sp|A6H779|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1

 Score =  241 bits (615), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 112/167 (67%), Positives = 140/167 (83%)

Query: 22  DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
           DE LINKKLPKELLLRIFS+LD+ +LCRCAQ+SKAWNILALDGSNW RIDLFNFQTDVEG
Sbjct: 7   DEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNFQTDVEG 66

Query: 82  PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
            V+ENIS+RCGGFLR++SLRGC  + D+SL   AQ C N+E +NLN C K+TD+T  +LS
Sbjct: 67  RVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLS 126

Query: 142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           + C+KL+ LDL SC  IT+ SLK +++GCR+L ++N+SWC  IT++G
Sbjct: 127 RFCSKLKHLDLTSCVSITNSSLKGISEGCRHLEYLNLSWCDQITKDG 173

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Bos taurus (taxid: 9913)

>sp|Q5R3Z8|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1

 Score =  240 bits (612), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 112/167 (67%), Positives = 139/167 (83%)

Query: 22  DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
           DE  INKKLPKELLLRIFS+LD+ +LCRCAQ+SKAWNILALDGSNW RIDLFNFQTDVEG
Sbjct: 7   DEGRINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNFQTDVEG 66

Query: 82  PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
            V+ENIS+RCGGFLR++SLRGC  + D+SL   AQ C N+E +NLN C K+TD+T  +LS
Sbjct: 67  RVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLS 126

Query: 142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           + C+KL+ LDL SC  IT+ SLK +++GCRNL ++N+SWC  IT++G
Sbjct: 127 RFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDG 173

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Pongo abelii (taxid: 9601)

>sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1

 Score =  240 bits (612), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 110/167 (65%), Positives = 139/167 (83%)

Query: 22  DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
           D+ LINKKLPKELLLRIFS+LD+ +LCRCAQ+SKAWNILALDGSNW R+DLFNFQTDVEG
Sbjct: 7   DDGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRVDLFNFQTDVEG 66

Query: 82  PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
            V+ENIS+RCGGFLR++SLRGC  + D+SL   AQ C N+E +NLN C K+TD+T  +LS
Sbjct: 67  RVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLS 126

Query: 142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           + C+KL+ LDL SC  +T+ SLK +++GCRNL ++N+SWC  IT+ G
Sbjct: 127 RFCSKLKHLDLTSCVSVTNSSLKGISEGCRNLEYLNLSWCDQITKEG 173

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Mus musculus (taxid: 10090)

>sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2

 Score =  238 bits (607), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/167 (67%), Positives = 139/167 (83%)

Query: 22  DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
           DEA+INKKLPKELLLRIFS+LDV +LCRCAQVS+AWN+LALDGSNW RIDLF+FQ D+EG
Sbjct: 20  DEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEG 79

Query: 82  PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
            V+ENIS+RCGGFLR++SLRGC  + DN+L   AQ C N+E +NLN C K TDAT  +LS
Sbjct: 80  RVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLS 139

Query: 142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           K C+KL+ LDLASC+ IT+ SLKAL++GC  L  +NISWC  +T++G
Sbjct: 140 KFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDG 186

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Homo sapiens (taxid: 9606)

>sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2

 Score =  238 bits (607), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/167 (67%), Positives = 139/167 (83%)

Query: 22  DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
           DEA+INKKLPKELLLRIFS+LDV +LCRCAQVS+AWN+LALDGSNW RIDLF+FQ D+EG
Sbjct: 20  DEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEG 79

Query: 82  PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
            V+ENIS+RCGGFLR++SLRGC  + DN+L   AQ C N+E +NLN C K TDAT  +LS
Sbjct: 80  RVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLS 139

Query: 142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           K C+KL+ LDLASC+ IT+ SLKAL++GC  L  +NISWC  +T++G
Sbjct: 140 KFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDG 186

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Bos taurus (taxid: 9913)

>sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3

 Score =  236 bits (603), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 112/167 (67%), Positives = 139/167 (83%)

Query: 22  DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
           DEA+INKKLPKELLLRIFS+LDV +LCRCAQVS+AWN+LALDGSNW RIDLF+FQ D+EG
Sbjct: 20  DEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEG 79

Query: 82  PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
            V+ENIS+RCGGFLR++SLRGC  + DN+L   AQ C N+E ++LN C K TDAT  +LS
Sbjct: 80  RVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLSLNGCTKTTDATCTSLS 139

Query: 142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           K C+KL+ LDLASC+ IT+ SLKAL++GC  L  +NISWC  +T++G
Sbjct: 140 KFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDG 186

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Isoform 3 regulates neural transmission by binding and ubiquitinating RIMS1, a modulator of presynaptic plasticity.

Mus musculus (taxid: 10090)

>sp|Q9QZH7|FXL20_RAT F-box/LRR-repeat protein 20 OS=Rattus norvegicus GN=Fbxl20 PE=1 SV=1

 Score =  236 bits (602), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 112/167 (67%), Positives = 139/167 (83%)

Query: 22  DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
           DEA+INKKLPKELLLRIFS+LDV +LCRCAQVS+AWN+LALDGSNW RIDLF+FQ D+EG
Sbjct: 20  DEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEG 79

Query: 82  PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
            V+ENIS+RCGGFLR++SLRGC  + DN+L   AQ C N+E ++LN C K TDAT  +LS
Sbjct: 80  RVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLSLNGCTKTTDATCTSLS 139

Query: 142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           K C+KL+ LDLASC+ IT+ SLKAL++GC  L  +NISWC  +T++G
Sbjct: 140 KFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDG 186

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Rattus norvegicus (taxid: 10116)

>sp|P34284|YKK7_CAEEL Uncharacterized F-box/LRR-repeat protein C02F5.7 OS=Caenorhabditis elegans GN=C02F5.7 PE=4 SV=3

 Score =  196 bits (497), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 129/167 (77%)

Query: 22  DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
           D +LIN+ LPKE+LL++FS+LD  +LCR AQV ++W+ILALDGSNW R+DLF FQ DV+ 
Sbjct: 52  DNSLINRVLPKEVLLKVFSFLDTKALCRSAQVCRSWSILALDGSNWQRVDLFTFQRDVKT 111

Query: 82  PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
            V+EN++RRCGGFL+++SL+GC+++ D++L      C N+E ++L  CK++TDA+   L 
Sbjct: 112 AVVENLARRCGGFLKELSLKGCENVHDSALRTFTSRCPNLEHLSLYRCKRVTDASCENLG 171

Query: 142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           ++C KL  L+L +CS ITD+++K + DGC NL+++NISWC  I + G
Sbjct: 172 RYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSYLNISWCDAIQDRG 218

Caenorhabditis elegans (taxid: 6239)

>sp|Q9UF56|FXL17_HUMAN F-box/LRR-repeat protein 17 OS=Homo sapiens GN=FBXL17 PE=2 SV=3

 Score = 94.0 bits (232), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)

Query: 29  KLPKELLLRIFSYLDVTSLCRCAQ-VSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENI 87
           +LP  +LL+IFS L +   C  A  V K W  L LD   W ++DL + Q  V   +LE I
Sbjct: 323 QLPPSILLKIFSNLSLDERCLSASLVCKYWRDLCLDFQFWKQLDLSSRQ-QVTDELLEKI 381

Query: 88  SRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKL 147
           + R    + +I++  C+SM+DN + +LA  C  +       CK+L+D + +A++ HC  L
Sbjct: 382 ASRSQNII-EINISDCRSMSDNGVCVLAFKCPGLLRYTAYRCKQLSDTSIIAVASHCPLL 440

Query: 148 QRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           Q++ + +   +TD+ LK L   CR L  I+   C  I++ G
Sbjct: 441 QKVHVGNQDKLTDEGLKQLGSKCRELKDIHFGQCYKISDEG 481

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
270006862	861	hypothetical protein TcasGA2_TC013252 [T	0.915	0.200	0.775	1e-75
189237655	433	PREDICTED: similar to AGAP007807-PA [Tri	0.915	0.399	0.775	1e-74
328696965	455	PREDICTED: f-box/LRR-repeat protein 20-l	0.915	0.380	0.729	9e-70
307180560	458	F-box/LRR-repeat protein 20 [Camponotus	0.904	0.373	0.735	4e-69
345491289	435	PREDICTED: F-box/LRR-repeat protein 20-l	0.968	0.420	0.706	4e-69
332025721	427	F-box/LRR-repeat protein 20 [Acromyrmex	0.904	0.400	0.735	8e-69
383857505	516	PREDICTED: F-box/LRR-repeat protein 20-l	0.899	0.329	0.735	1e-68
345491287	515	PREDICTED: F-box/LRR-repeat protein 20-l	0.904	0.332	0.735	2e-68
340723816	435	PREDICTED: f-box/LRR-repeat protein 20-l	0.968	0.420	0.690	1e-67
350424926	513	PREDICTED: F-box/LRR-repeat protein 20-l	0.915	0.337	0.718	4e-67

>gi|270006862|gb|EFA03310.1| hypothetical protein TcasGA2_TC013252 [Tribolium castaneum]

 Score =  287 bits (735), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 135/174 (77%), Positives = 152/174 (87%)

Query: 15  LTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFN 74
           LT+V  +DEALINKKLPKELLLRIFSY+DV SLCRCAQVSKAWN+LALDGSNW RIDLF+
Sbjct: 438 LTKVLSDDEALINKKLPKELLLRIFSYIDVVSLCRCAQVSKAWNVLALDGSNWQRIDLFD 497

Query: 75  FQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD 134
           FQ DVEGP++ENISRRCGGFLRQ+SLRGCQS+ D S+  LAQ C NVED+NLN CKKLTD
Sbjct: 498 FQKDVEGPIIENISRRCGGFLRQLSLRGCQSIADGSMKTLAQLCPNVEDLNLNGCKKLTD 557

Query: 135 ATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           A+  A SKHC+KLQ+L+L  CS ITD SLKAL+DGC NLTHINISW  N+TENG
Sbjct: 558 ASCTAFSKHCSKLQKLNLDGCSAITDNSLKALSDGCPNLTHINISWSNNVTENG 611

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237655|ref|XP_001812041.1| PREDICTED: similar to AGAP007807-PA [Tribolium castaneum]

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/174 (77%), Positives = 152/174 (87%)

Query: 15  LTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFN 74
           LT+V  +DEALINKKLPKELLLRIFSY+DV SLCRCAQVSKAWN+LALDGSNW RIDLF+
Sbjct: 10  LTKVLSDDEALINKKLPKELLLRIFSYIDVVSLCRCAQVSKAWNVLALDGSNWQRIDLFD 69

Query: 75  FQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD 134
           FQ DVEGP++ENISRRCGGFLRQ+SLRGCQS+ D S+  LAQ C NVED+NLN CKKLTD
Sbjct: 70  FQKDVEGPIIENISRRCGGFLRQLSLRGCQSIADGSMKTLAQLCPNVEDLNLNGCKKLTD 129

Query: 135 ATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           A+  A SKHC+KLQ+L+L  CS ITD SLKAL+DGC NLTHINISW  N+TENG
Sbjct: 130 ASCTAFSKHCSKLQKLNLDGCSAITDNSLKALSDGCPNLTHINISWSNNVTENG 183

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328696965|ref|XP_001945889.2| PREDICTED: f-box/LRR-repeat protein 20-like [Acyrthosiphon pisum]

 Score =  268 bits (684), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 127/174 (72%), Positives = 149/174 (85%)

Query: 15  LTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFN 74
           L++  L+++A INKKLPKELLLRIFSYLDV SLCRCAQVS+AWN+LALDGSNW +IDLF 
Sbjct: 32  LSKTCLDEDAQINKKLPKELLLRIFSYLDVVSLCRCAQVSRAWNVLALDGSNWQKIDLFE 91

Query: 75  FQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD 134
           FQTDVEGPV+ENISRRCGGFLRQISLRGCQS+ D SL  LAQ CN +E INLN CK++TD
Sbjct: 92  FQTDVEGPVIENISRRCGGFLRQISLRGCQSVGDGSLKTLAQCCNYIEYINLNGCKRITD 151

Query: 135 ATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           +TS +LS++C KL  LD+ SCS +TD SLKA++DGC NLT +NISWC  ITENG
Sbjct: 152 STSQSLSQYCKKLLSLDIGSCSMVTDLSLKAISDGCPNLTSVNISWCDGITENG 205

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180560|gb|EFN68516.1| F-box/LRR-repeat protein 20 [Camponotus floridanus]

 Score =  266 bits (679), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 128/174 (73%), Positives = 148/174 (85%)

Query: 15  LTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFN 74
           LT VF +DEA INKKLPKELLLRIFSYLDV SLCRCAQVSKAWN+LALDGSNW RIDLF+
Sbjct: 8   LTWVFHDDEAQINKKLPKELLLRIFSYLDVVSLCRCAQVSKAWNVLALDGSNWQRIDLFD 67

Query: 75  FQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD 134
           FQ DVEGPV+ENISRRCGGFLRQ+SL+GCQS+ +NS+  LAQ C N+E++NL+ CK+++D
Sbjct: 68  FQRDVEGPVIENISRRCGGFLRQLSLKGCQSIGNNSMRTLAQSCPNIEELNLSQCKRISD 127

Query: 135 ATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           AT  ALS HC KLQRL+L SC  ITD SLK LA GC  LTHIN+SWC  +T+NG
Sbjct: 128 ATCAALSSHCPKLQRLNLDSCPEITDMSLKDLAAGCPLLTHINLSWCELLTDNG 181

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491289|ref|XP_001603165.2| PREDICTED: F-box/LRR-repeat protein 20-like isoform 1 [Nasonia vitripennis]

 Score =  265 bits (678), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 130/184 (70%), Positives = 152/184 (82%), Gaps = 1/184 (0%)

Query: 6   FVHKKRSNV-LTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDG 64
            +H  R+ + LT VF +DEA INKKLPKELLLRI SYLDV SLCRCAQVSKAWN+LALDG
Sbjct: 1   MIHSGRTRLELTWVFHDDEAQINKKLPKELLLRILSYLDVVSLCRCAQVSKAWNVLALDG 60

Query: 65  SNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDI 124
           SNW RIDLF+FQ DVEGPV+ENISRRCGGFLRQ+SLRGCQS+ + S+  LAQ C N+E++
Sbjct: 61  SNWQRIDLFDFQRDVEGPVIENISRRCGGFLRQLSLRGCQSIGNVSMKTLAQSCPNIEEL 120

Query: 125 NLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINI 184
           NL+ CKK++D T  ALS HC KLQRL+L SC  ITD SLK L+DGCR LTHIN+SWC  +
Sbjct: 121 NLSQCKKISDTTCAALSNHCPKLQRLNLDSCPEITDLSLKDLSDGCRLLTHINLSWCELL 180

Query: 185 TENG 188
           T+NG
Sbjct: 181 TDNG 184

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025721|gb|EGI65879.1| F-box/LRR-repeat protein 20 [Acromyrmex echinatior]

 Score =  265 bits (676), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 128/174 (73%), Positives = 148/174 (85%)

Query: 15  LTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFN 74
           LT VF +DEA INKKLPKELLLRIFSYLDV SLCRCAQVSKAWN+LALDGSNW RIDLF+
Sbjct: 3   LTWVFHDDEAQINKKLPKELLLRIFSYLDVVSLCRCAQVSKAWNVLALDGSNWQRIDLFD 62

Query: 75  FQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD 134
           FQ DVEGPV+ENISRRCGGFLRQ+SL+GCQS+ +NS+  LAQ C N+E++NL+ CK+++D
Sbjct: 63  FQRDVEGPVIENISRRCGGFLRQLSLKGCQSIGNNSMRTLAQSCPNIEELNLSQCKRISD 122

Query: 135 ATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           AT  ALS HC KLQRL+L SC  ITD SLK LA GC  LTHIN+SWC  +T+NG
Sbjct: 123 ATCAALSSHCPKLQRLNLDSCPEITDMSLKDLAAGCPLLTHINLSWCELLTDNG 176

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857505|ref|XP_003704245.1| PREDICTED: F-box/LRR-repeat protein 20-like [Megachile rotundata]

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 128/174 (73%), Positives = 148/174 (85%)

Query: 15  LTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFN 74
           LT VF +DEA INKKLPKELLLRI SYLDV SLCRCAQVSKAWN+LALDGSNW RIDLF+
Sbjct: 92  LTWVFHDDEAQINKKLPKELLLRILSYLDVVSLCRCAQVSKAWNVLALDGSNWQRIDLFD 151

Query: 75  FQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD 134
           FQ DVEGPV+ENISRRCGGFLRQ+SLRGCQS+ +NS+  LAQ C N+E++NL+ CKK++D
Sbjct: 152 FQRDVEGPVIENISRRCGGFLRQLSLRGCQSIGNNSMRTLAQSCPNIEELNLSQCKKISD 211

Query: 135 ATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           AT  ALS HC KLQRL+L SC  ITD SLK L++GC  LTHIN+SWC  +T+NG
Sbjct: 212 ATCAALSSHCPKLQRLNLDSCPEITDISLKDLSEGCPLLTHINLSWCELLTDNG 265

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491287|ref|XP_003426564.1| PREDICTED: F-box/LRR-repeat protein 20-like isoform 2 [Nasonia vitripennis]

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 128/174 (73%), Positives = 147/174 (84%)

Query: 15  LTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFN 74
           LT VF +DEA INKKLPKELLLRI SYLDV SLCRCAQVSKAWN+LALDGSNW RIDLF+
Sbjct: 91  LTWVFHDDEAQINKKLPKELLLRILSYLDVVSLCRCAQVSKAWNVLALDGSNWQRIDLFD 150

Query: 75  FQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD 134
           FQ DVEGPV+ENISRRCGGFLRQ+SLRGCQS+ + S+  LAQ C N+E++NL+ CKK++D
Sbjct: 151 FQRDVEGPVIENISRRCGGFLRQLSLRGCQSIGNVSMKTLAQSCPNIEELNLSQCKKISD 210

Query: 135 ATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
            T  ALS HC KLQRL+L SC  ITD SLK L+DGCR LTHIN+SWC  +T+NG
Sbjct: 211 TTCAALSNHCPKLQRLNLDSCPEITDLSLKDLSDGCRLLTHINLSWCELLTDNG 264

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723816|ref|XP_003400284.1| PREDICTED: f-box/LRR-repeat protein 20-like isoform 1 [Bombus terrestris] gi|350424929|ref|XP_003493958.1| PREDICTED: F-box/LRR-repeat protein 20-like isoform 2 [Bombus impatiens]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/184 (69%), Positives = 152/184 (82%), Gaps = 1/184 (0%)

Query: 6   FVHKKRSNV-LTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDG 64
            +H  R+ + LT VF +DEA INKKLPKELLLRI SYLDV SLCRCAQVSKAWN+LALDG
Sbjct: 1   MIHSGRTRLELTWVFHDDEAQINKKLPKELLLRILSYLDVVSLCRCAQVSKAWNVLALDG 60

Query: 65  SNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDI 124
           SNW RIDLF+FQ DVEGPV+ENISRRCGGFL+Q+SLRGCQS+ +NS+  LAQ C N+E++
Sbjct: 61  SNWQRIDLFDFQRDVEGPVIENISRRCGGFLKQLSLRGCQSIGNNSMRTLAQSCTNIEEL 120

Query: 125 NLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINI 184
           NL+ CKK++D T  ALS HC+KLQRL+L SC  ITD SLK L++GC  LTHIN+SWC  +
Sbjct: 121 NLSQCKKISDTTCAALSSHCSKLQRLNLDSCPEITDISLKDLSNGCPLLTHINLSWCELL 180

Query: 185 TENG 188
           T+ G
Sbjct: 181 TDKG 184

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424926|ref|XP_003493957.1| PREDICTED: F-box/LRR-repeat protein 20-like isoform 1 [Bombus impatiens]

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 125/174 (71%), Positives = 147/174 (84%)

Query: 15  LTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFN 74
           LT VF +DEA INKKLPKELLLRI SYLDV SLCRCAQVSKAWN+LALDGSNW RIDLF+
Sbjct: 89  LTWVFHDDEAQINKKLPKELLLRILSYLDVVSLCRCAQVSKAWNVLALDGSNWQRIDLFD 148

Query: 75  FQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD 134
           FQ DVEGPV+ENISRRCGGFL+Q+SLRGCQS+ +NS+  LAQ C N+E++NL+ CKK++D
Sbjct: 149 FQRDVEGPVIENISRRCGGFLKQLSLRGCQSIGNNSMRTLAQSCTNIEELNLSQCKKISD 208

Query: 135 ATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
            T  ALS HC+KLQRL+L SC  ITD SLK L++GC  LTHIN+SWC  +T+ G
Sbjct: 209 TTCAALSSHCSKLQRLNLDSCPEITDISLKDLSNGCPLLTHINLSWCELLTDKG 262

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
UNIPROTKB|F1NHD2	423	FBXL2 "Uncharacterized protein	0.883	0.394	0.688	6.9e-63
UNIPROTKB|F1PWK1	422	FBXL2 "Uncharacterized protein	0.883	0.395	0.676	1.6e-61
UNIPROTKB|Q9UKC9	423	FBXL2 "F-box/LRR-repeat protei	0.883	0.394	0.676	1.6e-61
UNIPROTKB|A6H779	423	FBXL2 "F-box/LRR-repeat protei	0.883	0.394	0.670	5.5e-61
UNIPROTKB|Q5R3Z8	423	FBXL2 "F-box/LRR-repeat protei	0.883	0.394	0.670	7.1e-61
MGI|MGI:1919429	423	Fbxl2 "F-box and leucine-rich	0.883	0.394	0.658	7.1e-61
RGD|1562243	422	Fbxl2 "F-box and leucine-rich	0.883	0.395	0.658	7.1e-61
UNIPROTKB|Q58DG6	436	FBXL20 "F-box/LRR-repeat prote	0.883	0.383	0.676	3.9e-60
UNIPROTKB|Q96IG2	436	FBXL20 "F-box/LRR-repeat prote	0.883	0.383	0.676	3.9e-60
MGI|MGI:1919444	436	Fbxl20 "F-box and leucine-rich	0.883	0.383	0.670	1.3e-59

UNIPROTKB|F1NHD2 FBXL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 115/167 (68%), Positives = 141/167 (84%)

Query:    22 DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
             DEALINKKLPKELLLRIFS+LD+ +LCRCAQVSKAWN+LALDGSNW +IDLFNFQTD+EG
Sbjct:     7 DEALINKKLPKELLLRIFSFLDIVTLCRCAQVSKAWNVLALDGSNWQKIDLFNFQTDIEG 66

Query:    82 PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
              V+ENIS+RCGGFLRQ+SLRGC  + D+SL   AQ C N+E +NLN C K+TD+T  +LS
Sbjct:    67 RVVENISKRCGGFLRQLSLRGCHVVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLS 126

Query:   142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
             + C+KL+ LDL SC  IT+ SLK L++GCRNL H+N+SWC  IT++G
Sbjct:   127 RFCSKLKHLDLTSCVAITNSSLKGLSEGCRNLEHLNLSWCDQITKDG 173

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 113/167 (67%), Positives = 140/167 (83%)

Query:    22 DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
             DE LINKKLPKELLLRIFS+LD+ +LCRCAQ+SKAWNILALDGSNW RIDLFNFQTDVEG
Sbjct:     6 DEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNFQTDVEG 65

Query:    82 PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
              V+ENIS+RCGGFLR++SLRGC  + D+SL   AQ C N+E +NLN C K+TD+T  +LS
Sbjct:    66 RVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLS 125

Query:   142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
             + C+KL+ LDL SC  IT+ SLK +++GCRNL ++N+SWC  IT++G
Sbjct:   126 RFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDG 172

GO:0016020 "membrane" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 113/167 (67%), Positives = 140/167 (83%)

Query:    22 DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
             DE LINKKLPKELLLRIFS+LD+ +LCRCAQ+SKAWNILALDGSNW RIDLFNFQTDVEG
Sbjct:     7 DEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNFQTDVEG 66

Query:    82 PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
              V+ENIS+RCGGFLR++SLRGC  + D+SL   AQ C N+E +NLN C K+TD+T  +LS
Sbjct:    67 RVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLS 126

Query:   142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
             + C+KL+ LDL SC  IT+ SLK +++GCRNL ++N+SWC  IT++G
Sbjct:   127 RFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDG 173

GO:0005516 "calmodulin binding" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0006508 "proteolysis" evidence=TAS

UNIPROTKB|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 112/167 (67%), Positives = 140/167 (83%)

Query:    22 DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
             DE LINKKLPKELLLRIFS+LD+ +LCRCAQ+SKAWNILALDGSNW RIDLFNFQTDVEG
Sbjct:     7 DEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNFQTDVEG 66

Query:    82 PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
              V+ENIS+RCGGFLR++SLRGC  + D+SL   AQ C N+E +NLN C K+TD+T  +LS
Sbjct:    67 RVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLS 126

Query:   142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
             + C+KL+ LDL SC  IT+ SLK +++GCR+L ++N+SWC  IT++G
Sbjct:   127 RFCSKLKHLDLTSCVSITNSSLKGISEGCRHLEYLNLSWCDQITKDG 173

GO:0016020 "membrane" evidence=ISS

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

UNIPROTKB|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 112/167 (67%), Positives = 139/167 (83%)

Query:    22 DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
             DE  INKKLPKELLLRIFS+LD+ +LCRCAQ+SKAWNILALDGSNW RIDLFNFQTDVEG
Sbjct:     7 DEGRINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNFQTDVEG 66

Query:    82 PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
              V+ENIS+RCGGFLR++SLRGC  + D+SL   AQ C N+E +NLN C K+TD+T  +LS
Sbjct:    67 RVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLS 126

Query:   142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
             + C+KL+ LDL SC  IT+ SLK +++GCRNL ++N+SWC  IT++G
Sbjct:   127 RFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDG 173

GO:0016020 "membrane" evidence=ISS

MGI|MGI:1919429 Fbxl2 "F-box and leucine-rich repeat protein 2" [Mus musculus (taxid:10090)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 110/167 (65%), Positives = 139/167 (83%)

Query:    22 DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
             D+ LINKKLPKELLLRIFS+LD+ +LCRCAQ+SKAWNILALDGSNW R+DLFNFQTDVEG
Sbjct:     7 DDGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRVDLFNFQTDVEG 66

Query:    82 PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
              V+ENIS+RCGGFLR++SLRGC  + D+SL   AQ C N+E +NLN C K+TD+T  +LS
Sbjct:    67 RVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLS 126

Query:   142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
             + C+KL+ LDL SC  +T+ SLK +++GCRNL ++N+SWC  IT+ G
Sbjct:   127 RFCSKLKHLDLTSCVSVTNSSLKGISEGCRNLEYLNLSWCDQITKEG 173

GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0006513 "protein monoubiquitination" evidence=IGI;IMP

GO:0016020 "membrane" evidence=ISO

RGD|1562243 Fbxl2 "F-box and leucine-rich repeat protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 110/167 (65%), Positives = 139/167 (83%)

Query:    22 DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
             D+ LINKKLPKELLLRIFS+LD+ +LCRCAQ+SKAWNILALDGSNW R+DLFNFQTDVEG
Sbjct:     6 DDGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRVDLFNFQTDVEG 65

Query:    82 PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
              V+ENIS+RCGGFLR++SLRGC  + D+SL   AQ C N+E +NLN C K+TD+T  +LS
Sbjct:    66 RVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLS 125

Query:   142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
             + C+KL+ LDL SC  +T+ SLK +++GCRNL ++N+SWC  IT+ G
Sbjct:   126 RFCSKLKHLDLTSCVSVTNSSLKGISEGCRNLEYLNLSWCDQITKEG 172

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0006513 "protein monoubiquitination" evidence=IEA;ISO

GO:0016020 "membrane" evidence=IEA;ISO

UNIPROTKB|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 113/167 (67%), Positives = 139/167 (83%)

Query:    22 DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
             DEA+INKKLPKELLLRIFS+LDV +LCRCAQVS+AWN+LALDGSNW RIDLF+FQ D+EG
Sbjct:    20 DEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEG 79

Query:    82 PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
              V+ENIS+RCGGFLR++SLRGC  + DN+L   AQ C N+E +NLN C K TDAT  +LS
Sbjct:    80 RVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLS 139

Query:   142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
             K C+KL+ LDLASC+ IT+ SLKAL++GC  L  +NISWC  +T++G
Sbjct:   140 KFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDG 186

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 113/167 (67%), Positives = 139/167 (83%)

Query:    22 DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
             DEA+INKKLPKELLLRIFS+LDV +LCRCAQVS+AWN+LALDGSNW RIDLF+FQ D+EG
Sbjct:    20 DEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEG 79

Query:    82 PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
              V+ENIS+RCGGFLR++SLRGC  + DN+L   AQ C N+E +NLN C K TDAT  +LS
Sbjct:    80 RVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLS 139

Query:   142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
             K C+KL+ LDLASC+ IT+ SLKAL++GC  L  +NISWC  +T++G
Sbjct:   140 KFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDG 186

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1919444 Fbxl20 "F-box and leucine-rich repeat protein 20" [Mus musculus (taxid:10090)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 112/167 (67%), Positives = 139/167 (83%)

Query:    22 DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEG 81
             DEA+INKKLPKELLLRIFS+LDV +LCRCAQVS+AWN+LALDGSNW RIDLF+FQ D+EG
Sbjct:    20 DEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEG 79

Query:    82 PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS 141
              V+ENIS+RCGGFLR++SLRGC  + DN+L   AQ C N+E ++LN C K TDAT  +LS
Sbjct:    80 RVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLSLNGCTKTTDATCTSLS 139

Query:   142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
             K C+KL+ LDLASC+ IT+ SLKAL++GC  L  +NISWC  +T++G
Sbjct:   140 KFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDG 186

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UKC9	FBXL2_HUMAN	No assigned EC number	0.6766	0.8783	0.3924	yes	N/A
A6H779	FBXL2_BOVIN	No assigned EC number	0.6706	0.8783	0.3924	yes	N/A
Q5R3Z8	FBXL2_PONAB	No assigned EC number	0.6706	0.8783	0.3924	yes	N/A
Q8BH16	FBXL2_MOUSE	No assigned EC number	0.6586	0.8677	0.3877	yes	N/A
P34284	YKK7_CAEEL	No assigned EC number	0.5209	0.8730	0.3540	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	189
pfam12937	47	pfam12937, F-box-like, F-box-like	7e-14
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	6e-11
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	4e-10
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	3e-07
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	2e-06
pfam00646	48	pfam00646, F-box, F-box domain	9e-06
smart00367	26	smart00367, LRR_CC, Leucine-rich repeat - CC (cyst	6e-04

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 62.5 bits (153), Expect = 7e-14
 Identities = 23/44 (52%), Positives = 27/44 (61%)

Query: 29 KLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDL 72
           LP E+LL+IFSYLD   L R A V + W  LA D S W R+ L
Sbjct: 3  DLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRRLCL 46

This is an F-box-like family. Length = 47

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 6/106 (5%)

Query: 84  LENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINL---NLCKKLTDATSLAL 140
           L  +++ C   L+ + LR C+++TD+ +  LA  C  ++ INL        +TD +  AL
Sbjct: 70  LIALAQSCPN-LQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSAL 128

Query: 141 SKHCAKLQRLDLASCSFITDQSLKALADGC-RNLTHINISWCINIT 185
            K+C  LQ +  A C  +TD+ +  LA GC ++L  ++++ C N+T
Sbjct: 129 GKNCTFLQTVGFAGC-DVTDKGVWELASGCSKSLERLSLNNCRNLT 173

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 6/106 (5%)

Query: 76  QTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQ--YCNNVEDINLNLCKKLT 133
              +    +  + R     L  + L  C      S   L Q   CN ++ + L   K + 
Sbjct: 11  LGQITQSNISQLLRILHSGLEWLELYMC----PISDPPLDQLSNCNKLKKLILPGSKLID 66

Query: 134 DATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINIS 179
           D   +AL++ C  LQ LDL +C  ITD  + ALA  C  L  IN+ 
Sbjct: 67  DEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTINLG 112

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 8/105 (7%)

Query: 87  ISRRCGGFLRQISL---RGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLAL-SK 142
           ++  C   L+ I+L   R    +TD SL+ L + C  ++ +    C  +TD     L S 
Sbjct: 99  LATNCP-KLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCD-VTDKGVWELASG 156

Query: 143 HCAKLQRLDLASCSFITDQSLKAL--ADGCRNLTHINISWCINIT 185
               L+RL L +C  +TDQS+ A+  ++   NL+ +    C  IT
Sbjct: 157 CSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLIT 201

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 42.4 bits (101), Expect = 2e-06
 Identities = 15/38 (39%), Positives = 18/38 (47%)

Query: 30 LPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNW 67
          LP E+L  I S LD   L R  +VS+ W  L      W
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFW 38

Length = 41

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 41.0 bits (97), Expect = 9e-06
 Identities = 18/44 (40%), Positives = 21/44 (47%)

Query: 29 KLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDL 72
           LP +LLL I S LD   L R + VSK W  L      W +  L
Sbjct: 5  DLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197685 smart00367, LRR_CC, Leucine-rich repeat - CC (cysteine-containing) subfamily

 Score = 35.5 bits (83), Expect = 6e-04
 Identities = 14/26 (53%), Positives = 19/26 (73%)

Query: 144 CAKLQRLDLASCSFITDQSLKALADG 169
           C  L+ LDL+ C+ ITD+ L+ALA G
Sbjct: 1   CPNLRELDLSGCTNITDEGLQALAKG 26

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
KOG4341|consensus	483		99.94
KOG2120|consensus	419		99.89
KOG4341|consensus	483		99.52
KOG2120|consensus	419		99.39
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.32
KOG1947|consensus	482		99.28
KOG1947|consensus	482		99.2
KOG3864|consensus	221		98.88
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.8
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.55
KOG3864|consensus	221		98.35
KOG1909|consensus	382		98.13
KOG3665|consensus	699		98.1
KOG3207|consensus	505		98.03
KOG1909|consensus	382		97.95
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.95
KOG3665|consensus	699		97.67
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.65
KOG2997|consensus	366		97.42
KOG0281|consensus	499		97.41
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.08
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.08
KOG3207|consensus	505		97.06
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.8
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.72
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	96.69
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	96.69
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.49
KOG2739|consensus	260		96.4
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.4
KOG0618|consensus	1081		96.35
KOG2123|consensus	388		96.32
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	96.05
PLN03150	623	hypothetical protein; Provisional	96.05
KOG2982|consensus	418		95.81
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.79
KOG2739|consensus	260		95.64
KOG2982|consensus	418		95.58
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.54
KOG2123|consensus	388		94.67
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	94.57
PLN03150	623	hypothetical protein; Provisional	94.52
KOG4194|consensus	873		94.32
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	94.3
KOG3763|consensus	585		94.17
KOG4194|consensus	873		94.16
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.94
PF13013	109	F-box-like_2: F-box-like domain	93.53
KOG1859|consensus	1096		93.52
KOG0472|consensus	565		93.48
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.13
KOG1644|consensus	233		91.52
KOG0444|consensus	1255		91.22
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	91.16
KOG0444|consensus	1255		91.04
KOG0274|consensus	537		90.98
PF09372	97	PRANC: PRANC domain; InterPro: IPR018272 This pres	90.91
KOG1644|consensus	233		87.7
PRK15386	426	type III secretion protein GogB; Provisional	86.43
KOG1259|consensus	490		85.19
KOG0618|consensus	1081		84.97
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	84.91
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	84.67
KOG3926|consensus	332		84.45
KOG4237|consensus	498		83.27
KOG1259|consensus	490		83.24
KOG4658|consensus	889		82.57
KOG4308|consensus	478		82.34
KOG4579|consensus	177		81.23
KOG3735|consensus	353		80.84
KOG4658|consensus	889		80.04

>KOG4341|consensus

Probab=99.94  E-value=8.4e-28  Score=184.87  Aligned_cols=164  Identities=55%  Similarity=1.006  Sum_probs=157.9

Q ss_pred             hhcCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCC
Q psy9585          25 LINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQ  104 (189)
Q Consensus        25 ~~~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~  104 (189)
                      ..--.||.|++.+||++|+.+.+.+++++|+.|...+.|...|.++|+..+..+++..++..+.++|+..|++|.++||.
T Consensus        70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r  149 (483)
T KOG4341|consen   70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCR  149 (483)
T ss_pred             cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccc
Confidence            33457999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCc
Q psy9585         105 SMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINI  184 (189)
Q Consensus       105 ~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~l  184 (189)
                      .+.+..+..+...||+++.|.+.+|.++|+..+..+.+.|++|++|+|..|..+|+..++.++++||+|++|+++||+.+
T Consensus       150 ~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi  229 (483)
T KOG4341|consen  150 AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI  229 (483)
T ss_pred             cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q psy9585         185 TENG  188 (189)
Q Consensus       185 t~~~  188 (189)
                      +++|
T Consensus       230 ~~~g  233 (483)
T KOG4341|consen  230 SGNG  233 (483)
T ss_pred             hcCc
Confidence            8865

>KOG2120|consensus

Probab=99.89  E-value=3e-23  Score=154.29  Aligned_cols=154  Identities=31%  Similarity=0.510  Sum_probs=133.8

Q ss_pred             cCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHH----------------
Q psy9585          27 NKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRR----------------   90 (189)
Q Consensus        27 ~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~----------------   90 (189)
                      |+.||||++..||+.|+.++++.++.||++|+++..+..+|..+|+.+-  .+....+..+.++                
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r--~i~p~~l~~l~~rgV~v~Rlar~~~~~pr  175 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGR--NIHPDVLGRLLSRGVIVFRLARSFMDQPR  175 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCC--ccChhHHHHHHhCCeEEEEcchhhhcCch
Confidence            9999999999999999999999999999999999999999999998643  4444444444332                


Q ss_pred             -------cCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHH
Q psy9585          91 -------CGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSL  163 (189)
Q Consensus        91 -------~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l  163 (189)
                             +...|+.|++++ ..++-..+.-+...|.+|+.|++.+ ..++|.....|++ ..+|+.|+|++|..+|..++
T Consensus       176 lae~~~~frsRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~  252 (419)
T KOG2120|consen  176 LAEHFSPFRSRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENAL  252 (419)
T ss_pred             hhhhhhhhhhhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhc-cccceeeccccccccchhHH
Confidence                   112488999998 6889999999999999999999999 6899999999887 68999999999999999999


Q ss_pred             HHHHhcCCCCCeeecccCcCcC
Q psy9585         164 KALADGCRNLTHINISWCINIT  185 (189)
Q Consensus       164 ~~l~~~~~~L~~L~l~~c~~lt  185 (189)
                      ..+..+|..|..|+++||.-.+
T Consensus       253 ~ll~~scs~L~~LNlsWc~l~~  274 (419)
T KOG2120|consen  253 QLLLSSCSRLDELNLSWCFLFT  274 (419)
T ss_pred             HHHHHhhhhHhhcCchHhhccc
Confidence            9999999999999999995443

>KOG4341|consensus

Probab=99.52  E-value=6.8e-15  Score=114.19  Aligned_cols=111  Identities=32%  Similarity=0.601  Sum_probs=95.8

Q ss_pred             CCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCC
Q psy9585          78 DVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSF  157 (189)
Q Consensus        78 ~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~  157 (189)
                      .++|..+..+...|.. |+.|..++|+.++|..+..++.+|++|+.|.+.+|.++++.++..+..+++.|+.+++.+|..
T Consensus       280 ~lTD~~~~~i~~~c~~-lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~  358 (483)
T KOG4341|consen  280 QLTDEDLWLIACGCHA-LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL  358 (483)
T ss_pred             cccchHHHHHhhhhhH-hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence            3556666666666665 888888888888888889999999999999999999999999999999999999999999998


Q ss_pred             CCHHHHHHHHhcCCCCCeeecccCcCcCCCCC
Q psy9585         158 ITDQSLKALADGCRNLTHINISWCINITENGK  189 (189)
Q Consensus       158 i~~~~l~~l~~~~~~L~~L~l~~c~~lt~~~~  189 (189)
                      ++|..+..++.+||.|++|.+++|..+||+|+
T Consensus       359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi  390 (483)
T KOG4341|consen  359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGI  390 (483)
T ss_pred             ehhhhHhhhccCCchhccCChhhhhhhhhhhh
Confidence            99888999999999999999999999999874

>KOG2120|consensus

Probab=99.39  E-value=3e-13  Score=101.38  Aligned_cols=128  Identities=21%  Similarity=0.464  Sum_probs=101.3

Q ss_pred             HHHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHH
Q psy9585          56 AWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDA  135 (189)
Q Consensus        56 ~w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~  135 (189)
                      ....+....+.++.+.+.+.  .++|.++..++.+-  +|+.|++++|..++..+++.+..+|..|..|+|++|...++.
T Consensus       201 tl~~iLs~C~kLk~lSlEg~--~LdD~I~~~iAkN~--~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~  276 (419)
T KOG2120|consen  201 TLHGILSQCSKLKNLSLEGL--RLDDPIVNTIAKNS--NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK  276 (419)
T ss_pred             HHHHHHHHHHhhhhcccccc--ccCcHHHHHHhccc--cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh
Confidence            33444333455666666654  77788888888765  399999999999999999999999999999999999766665


Q ss_pred             HHHHHHHcCCCCCEEecCCCC-CCCHHHHHHHHhcCCCCCeeecccCcCcCCC
Q psy9585         136 TSLALSKHCAKLQRLDLASCS-FITDQSLKALADGCRNLTHINISWCINITEN  187 (189)
Q Consensus       136 ~~~~l~~~~~~L~~L~L~~c~-~i~~~~l~~l~~~~~~L~~L~l~~c~~lt~~  187 (189)
                      .-..+..-.++|..|+|+||. ++.+..+..+.+.||+|.+|++++|..++++
T Consensus       277 Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~  329 (419)
T KOG2120|consen  277 VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND  329 (419)
T ss_pred             hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch
Confidence            444444456899999999985 4677789999999999999999999888874

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.32  E-value=8.7e-13  Score=73.48  Aligned_cols=46  Identities=46%  Similarity=0.755  Sum_probs=40.0

Q ss_pred             cCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceeec
Q psy9585          27 NKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDL   72 (189)
Q Consensus        27 ~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~l   72 (189)
                      |..||+|++.+||+||+..|+.++++|||+|+.++.++.+|+++.+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~   46 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL   46 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence            5789999999999999999999999999999999988788988754

>KOG1947|consensus

Probab=99.28  E-value=4.4e-11  Score=97.59  Aligned_cols=154  Identities=31%  Similarity=0.524  Sum_probs=115.2

Q ss_pred             CCCCHHHHHHHHhcCCh---hhhHHHhhhhHH-HHHhhhCCCCcceeeccCC--CCCCCHHHHHHHHHHcCCCccEEeec
Q psy9585          28 KKLPKELLLRIFSYLDV---TSLCRCAQVSKA-WNILALDGSNWSRIDLFNF--QTDVEGPVLENISRRCGGFLRQISLR  101 (189)
Q Consensus        28 ~~LP~~il~~I~~~L~~---~~~~~~~~v~~~-w~~~~~~~~~~~~~~l~~~--~~~~~~~~l~~l~~~~~~~L~~L~l~  101 (189)
                      ......++..+....+.   ..+..+..+... +..+......++.+++...  ...........++..|. +++.|++.
T Consensus       173 ~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~L~~l~l~  251 (482)
T KOG1947|consen  173 SLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICR-KLKSLDLS  251 (482)
T ss_pred             ccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcC-CcCccchh
Confidence            34455555555554333   222334344433 3445555567778887642  12233444555778885 49999999


Q ss_pred             CCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         102 GCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      ++..++|.++..++..|++|+.|.+.+|..++++++..+...|++|++|+|++|..++|.++..++.+||+|+.|.+..+
T Consensus       252 ~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  252 GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            98889999999999999999999999998899999999999999999999999999999999999999999888776655


Q ss_pred             c
Q psy9585         182 I  182 (189)
Q Consensus       182 ~  182 (189)
                      .
T Consensus       332 ~  332 (482)
T KOG1947|consen  332 N  332 (482)
T ss_pred             C
Confidence            3

>KOG1947|consensus

Probab=99.20  E-value=3.8e-11  Score=97.97  Aligned_cols=110  Identities=29%  Similarity=0.625  Sum_probs=90.9

Q ss_pred             CCCHHHHHHHHHHcCCCccEEeecC-CCCCCHH--HHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCC
Q psy9585          78 DVEGPVLENISRRCGGFLRQISLRG-CQSMTDN--SLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLAS  154 (189)
Q Consensus        78 ~~~~~~l~~l~~~~~~~L~~L~l~~-~~~~~~~--~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~  154 (189)
                      .+.+..+..++..++. |++|.+.+ +......  ....+...|++|+.|++++|..+++.++..++..|++|++|.+.+
T Consensus       200 ~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~  278 (482)
T KOG1947|consen  200 KITDDSLDALALKCPN-LEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSN  278 (482)
T ss_pred             cCChhhHHHHHhhCch-hheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCC
Confidence            4445557777778776 99999887 3333322  234467788999999999988899999999999999999999999


Q ss_pred             CCCCCHHHHHHHHhcCCCCCeeecccCcCcCCCC
Q psy9585         155 CSFITDQSLKALADGCRNLTHINISWCINITENG  188 (189)
Q Consensus       155 c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt~~~  188 (189)
                      |..++++++..++..||+|++|++++|..+++.|
T Consensus       279 c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~  312 (482)
T KOG1947|consen  279 CSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSG  312 (482)
T ss_pred             CCccchhHHHHHHHhcCcccEEeeecCccchHHH
Confidence            9999999999999999999999999999887754

>KOG3864|consensus

Probab=98.88  E-value=1.1e-09  Score=77.94  Aligned_cols=89  Identities=24%  Similarity=0.330  Sum_probs=69.7

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT  174 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~  174 (189)
                      ++.++.++ ..+..+++..+. .++.|+.|++.+|..++|..+.-+..-.++|+.|+|++|++||+.++..|.+ .++|+
T Consensus       103 IeaVDAsd-s~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr  179 (221)
T KOG3864|consen  103 IEAVDASD-SSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLR  179 (221)
T ss_pred             EEEEecCC-chHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhH
Confidence            56666666 356777777665 7788888888888888888888888877888888888888888888888776 78888


Q ss_pred             eeecccCcCcCC
Q psy9585         175 HINISWCINITE  186 (189)
Q Consensus       175 ~L~l~~c~~lt~  186 (189)
                      .|.+.+=+.|.+
T Consensus       180 ~L~l~~l~~v~~  191 (221)
T KOG3864|consen  180 RLHLYDLPYVAN  191 (221)
T ss_pred             HHHhcCchhhhc
Confidence            888877655543

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.80  E-value=8e-09  Score=55.46  Aligned_cols=40  Identities=35%  Similarity=0.543  Sum_probs=36.6

Q ss_pred             CCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcce
Q psy9585          30 LPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSR   69 (189)
Q Consensus        30 LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~   69 (189)
                      ||+|++..||++++..|+.+++.||++|+.++.++..|+.
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999987776653

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.78  E-value=1.3e-09  Score=60.86  Aligned_cols=42  Identities=40%  Similarity=0.603  Sum_probs=34.5

Q ss_pred             hcCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCc
Q psy9585          26 INKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNW   67 (189)
Q Consensus        26 ~~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~   67 (189)
                      .|.+||+|++.+||++|+..|+..++.||++|++++.+...|
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~   43 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLW   43 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCcc
Confidence            478999999999999999999999999999999988654443

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.75  E-value=1.5e-07  Score=73.00  Aligned_cols=87  Identities=30%  Similarity=0.366  Sum_probs=42.1

Q ss_pred             ccEEeecCCCCCCHHHHHHHHH---cCCCcceEecccCCCCCHHHHHHHH---HcCCCCCEEecCCCCCCCHHHHHHHHh
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQ---YCNNVEDINLNLCKKLTDATSLALS---KHCAKLQRLDLASCSFITDQSLKALAD  168 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~---~~~~~L~~L~L~~c~~i~~~~l~~l~~  168 (189)
                      |++|+++++ .+++..+..+..   .+++|+.|++++| .+++.....+.   ..+++|++|++++| .+++.++..++.
T Consensus       167 L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~  243 (319)
T cd00116         167 LKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALAS  243 (319)
T ss_pred             cCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHH
Confidence            555555553 344333333322   2335666666554 34443333322   23455666666653 355555555544


Q ss_pred             cC----CCCCeeecccCcCcC
Q psy9585         169 GC----RNLTHINISWCINIT  185 (189)
Q Consensus       169 ~~----~~L~~L~l~~c~~lt  185 (189)
                      .+    ++|++|++++| .++
T Consensus       244 ~~~~~~~~L~~L~l~~n-~i~  263 (319)
T cd00116         244 ALLSPNISLLTLSLSCN-DIT  263 (319)
T ss_pred             HHhccCCCceEEEccCC-CCC
Confidence            33    45666666655 344

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.55  E-value=1.9e-06  Score=66.84  Aligned_cols=118  Identities=23%  Similarity=0.267  Sum_probs=82.4

Q ss_pred             CCcceeeccCCCCCCCHHHHHHHHHHcC--CCccEEeecCCCCCCHHHHHH---HHHcCCCcceEecccCCCCCHHHHHH
Q psy9585          65 SNWSRIDLFNFQTDVEGPVLENISRRCG--GFLRQISLRGCQSMTDNSLNI---LAQYCNNVEDINLNLCKKLTDATSLA  139 (189)
Q Consensus        65 ~~~~~~~l~~~~~~~~~~~l~~l~~~~~--~~L~~L~l~~~~~~~~~~l~~---l~~~~~~L~~L~l~~~~~i~~~~~~~  139 (189)
                      ..++.+++...  .+.+..+..+.....  .+|+.|+++++ .+++.....   ....+++|+.|++++| .+++.++..
T Consensus       165 ~~L~~L~l~~n--~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~  240 (319)
T cd00116         165 RDLKELNLANN--GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAA  240 (319)
T ss_pred             CCcCEEECcCC--CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHH
Confidence            34566666543  455455555443322  24999999996 566655443   4456789999999996 688877777


Q ss_pred             HHHcC----CCCCEEecCCCCCCCHHHHHHHHhc---CCCCCeeecccCcCcCCCC
Q psy9585         140 LSKHC----AKLQRLDLASCSFITDQSLKALADG---CRNLTHINISWCINITENG  188 (189)
Q Consensus       140 l~~~~----~~L~~L~L~~c~~i~~~~l~~l~~~---~~~L~~L~l~~c~~lt~~~  188 (189)
                      +...+    +.|++|++.+|. +++.+...+...   +++|++++++++ .++++|
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~  294 (319)
T cd00116         241 LASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEG  294 (319)
T ss_pred             HHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHH
Confidence            77654    799999999964 887666555443   468999999998 677653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3864|consensus

Probab=98.35  E-value=8.4e-07  Score=63.53  Aligned_cols=82  Identities=22%  Similarity=0.408  Sum_probs=67.5

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHH--HHHHHHhcCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQ--SLKALADGCR  171 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~--~l~~l~~~~~  171 (189)
                      .++.|.+.+|.++.|..+..+..-.++|+.|++++|..||+.++..+.. +++|+.|.|.+-..+..-  ....+-..+|
T Consensus       126 ~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l~~l~~v~~~e~~~~~Le~aLP  204 (221)
T KOG3864|consen  126 SIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHLYDLPYVANLELVQRQLEEALP  204 (221)
T ss_pred             hhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHHHhcCchhhhchHHHHHHHHHhCc
Confidence            4999999999999999999999889999999999999999999999876 899999999885544332  2333445567


Q ss_pred             CCCee
Q psy9585         172 NLTHI  176 (189)
Q Consensus       172 ~L~~L  176 (189)
                      ++...
T Consensus       205 ~c~I~  209 (221)
T KOG3864|consen  205 KCDIV  209 (221)
T ss_pred             cccee
Confidence            76654

>KOG1909|consensus

Probab=98.13  E-value=2.3e-05  Score=60.56  Aligned_cols=75  Identities=27%  Similarity=0.386  Sum_probs=48.6

Q ss_pred             HHHHHHcCCCcceEecccCCCCCHHHHHHHH---HcCCCCCEEecCCCCCCCHHHHHHHHhcC---CCCCeeecccCcCc
Q psy9585         111 LNILAQYCNNVEDINLNLCKKLTDATSLALS---KHCAKLQRLDLASCSFITDQSLKALADGC---RNLTHINISWCINI  184 (189)
Q Consensus       111 l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~---~~~~~L~~L~L~~c~~i~~~~l~~l~~~~---~~L~~L~l~~c~~l  184 (189)
                      +....+.++.|+.+.+.. +.|..+++..+.   .+||+|+.|+|.. ..++.++-..++...   |+|+.|++++| .+
T Consensus       177 ~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dc-ll  253 (382)
T KOG1909|consen  177 LAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDC-LL  253 (382)
T ss_pred             HHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeeccccc-cc
Confidence            444555667777777776 455555554433   3678888888877 557766655555443   56777788888 67


Q ss_pred             CCCC
Q psy9585         185 TENG  188 (189)
Q Consensus       185 t~~~  188 (189)
                      .++|
T Consensus       254 ~~~G  257 (382)
T KOG1909|consen  254 ENEG  257 (382)
T ss_pred             cccc
Confidence            7665

>KOG3665|consensus

Probab=98.10  E-value=6.9e-06  Score=70.17  Aligned_cols=65  Identities=12%  Similarity=0.229  Sum_probs=42.3

Q ss_pred             CCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCC
Q psy9585          65 SNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLT  133 (189)
Q Consensus        65 ~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~  133 (189)
                      ..++++++++.. .+...+...+....|. |++|.+.|. .+....+..+..++|+|..|+++++ +++
T Consensus       122 ~nL~~LdI~G~~-~~s~~W~~kig~~LPs-L~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~  186 (699)
T KOG3665|consen  122 QNLQHLDISGSE-LFSNGWPKKIGTMLPS-LRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NIS  186 (699)
T ss_pred             HhhhhcCccccc-hhhccHHHHHhhhCcc-cceEEecCc-eecchhHHHHhhccCccceeecCCC-Ccc
Confidence            345566665533 4456667777777775 888888874 4444446667778888888888774 444

>KOG3207|consensus

Probab=98.03  E-value=4.3e-06  Score=66.31  Aligned_cols=110  Identities=19%  Similarity=0.197  Sum_probs=67.3

Q ss_pred             ceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCC
Q psy9585          68 SRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKL  147 (189)
Q Consensus        68 ~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L  147 (189)
                      +.+.+.++  .+.+.......+.|+. ++.|+++......-..+..++..+|+|+.|+|+. +++..-.-......++.|
T Consensus       124 ~~IsLdn~--~V~~~~~~~~~k~~~~-v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  124 REISLDNY--RVEDAGIEEYSKILPN-VRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             hheeecCc--cccccchhhhhhhCCc-ceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCccccchhhhhhh
Confidence            44444444  2322222245666775 8888888754444455666777888888888776 222110000111135778


Q ss_pred             CEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCc
Q psy9585         148 QRLDLASCSFITDQSLKALADGCRNLTHINISWCI  182 (189)
Q Consensus       148 ~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~  182 (189)
                      ++|.|+.|. ++...+..+...||+|+.|.+.++.
T Consensus       200 K~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~  233 (505)
T KOG3207|consen  200 KQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANE  233 (505)
T ss_pred             heEEeccCC-CCHHHHHHHHHhCCcHHHhhhhccc
Confidence            888888866 7777788888888888888887763

>KOG1909|consensus

Probab=97.95  E-value=5.1e-05  Score=58.72  Aligned_cols=84  Identities=25%  Similarity=0.335  Sum_probs=42.8

Q ss_pred             ccEEeecCCCCCCHHH---HHHHHHcCCCcceEecccCCCCCHHHHHHHH----HcCCCCCEEecCCCCCCCHHHHHHHH
Q psy9585          95 LRQISLRGCQSMTDNS---LNILAQYCNNVEDINLNLCKKLTDATSLALS----KHCAKLQRLDLASCSFITDQSLKALA  167 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~----~~~~~L~~L~L~~c~~i~~~~l~~l~  167 (189)
                      |+.|++... .++..+   +......+++|++|+++.| .+.+.+..++.    ...|+|+.|.+.++. |+..+...+.
T Consensus       215 LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la  291 (382)
T KOG1909|consen  215 LEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALA  291 (382)
T ss_pred             ceeeecccc-hhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHH
Confidence            666666553 333332   2222334556666666665 34443333332    345666666666633 6555544332


Q ss_pred             h---cCCCCCeeecccC
Q psy9585         168 D---GCRNLTHINISWC  181 (189)
Q Consensus       168 ~---~~~~L~~L~l~~c  181 (189)
                      .   ..|.|++|+|++|
T Consensus       292 ~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  292 ACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             HHHhcchhhHHhcCCcc
Confidence            2   2466777777776

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.95  E-value=1.4e-05  Score=38.23  Aligned_cols=25  Identities=52%  Similarity=0.942  Sum_probs=17.0

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHh
Q psy9585         144 CAKLQRLDLASCSFITDQSLKALAD  168 (189)
Q Consensus       144 ~~~L~~L~L~~c~~i~~~~l~~l~~  168 (189)
                      ||+|+.|+|++|..|||.++..|+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            4667777777777777777766653

>KOG3665|consensus

Probab=97.67  E-value=3.4e-05  Score=66.02  Aligned_cols=67  Identities=10%  Similarity=0.196  Sum_probs=54.9

Q ss_pred             cCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCC
Q psy9585          91 CGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFIT  159 (189)
Q Consensus        91 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~  159 (189)
                      ...+|++|+++|...++..-...++..+|+|++|.+.+- .+..+.+..+...+|+|..||++++ +|+
T Consensus       120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~  186 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NIS  186 (699)
T ss_pred             HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-Ccc
Confidence            345699999999777766667788889999999999994 5666668888999999999999994 344

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.65  E-value=6.8e-05  Score=35.78  Aligned_cols=25  Identities=36%  Similarity=0.708  Sum_probs=21.0

Q ss_pred             CCCcceEecccCCCCCHHHHHHHHH
Q psy9585         118 CNNVEDINLNLCKKLTDATSLALSK  142 (189)
Q Consensus       118 ~~~L~~L~l~~~~~i~~~~~~~l~~  142 (189)
                      |++|+.|+|++|.+++|.++..+++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            6788889999988899888888764

>KOG2997|consensus

Probab=97.42  E-value=0.00014  Score=55.59  Aligned_cols=49  Identities=33%  Similarity=0.476  Sum_probs=41.6

Q ss_pred             hhhcCCCCHHHHHHHHhc-----CChhhhHHHhhhhHHHHHhhhCCCCcceeec
Q psy9585          24 ALINKKLPKELLLRIFSY-----LDVTSLCRCAQVSKAWNILALDGSNWSRIDL   72 (189)
Q Consensus        24 ~~~~~~LP~~il~~I~~~-----L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~l   72 (189)
                      ...+..||||||..||..     ++..++.+++.||+.|+..+.++.+|+..-+
T Consensus       104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~  157 (366)
T KOG2997|consen  104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL  157 (366)
T ss_pred             hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence            344789999999999974     5678899999999999999999988876543

>KOG0281|consensus

Probab=97.41  E-value=9.6e-05  Score=57.07  Aligned_cols=48  Identities=35%  Similarity=0.668  Sum_probs=44.3

Q ss_pred             hhhcCCCC----HHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceee
Q psy9585          24 ALINKKLP----KELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRID   71 (189)
Q Consensus        24 ~~~~~~LP----~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~   71 (189)
                      .+.+..||    +++.+.||+||+..++..|-.||++|+.+..++..|+.+-
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLi  123 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLI  123 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence            46788999    9999999999999999999999999999999999998863

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.10  E-value=0.00014  Score=51.85  Aligned_cols=81  Identities=19%  Similarity=0.192  Sum_probs=30.3

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCH-HHHHHHHHcCCCCCEEecCCCCCCCHHH--HHHHHhcCC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD-ATSLALSKHCAKLQRLDLASCSFITDQS--LKALADGCR  171 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~L~~L~L~~c~~i~~~~--l~~l~~~~~  171 (189)
                      |+.|.+++. .++.-. ..+...+|+|++|.+++ ..+.+ ..+..+. .+|+|+.|+|.+ ..+++..  -..+...+|
T Consensus        66 L~~L~L~~N-~I~~i~-~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~-~l~~L~~L~L~~-NPv~~~~~YR~~vi~~lP  140 (175)
T PF14580_consen   66 LKTLDLSNN-RISSIS-EGLDKNLPNLQELYLSN-NKISDLNELEPLS-SLPKLRVLSLEG-NPVCEKKNYRLFVIYKLP  140 (175)
T ss_dssp             --EEE--SS----S-C-HHHHHH-TT--EEE-TT-S---SCCCCGGGG-G-TT--EEE-TT--GGGGSTTHHHHHHHH-T
T ss_pred             hhhcccCCC-CCCccc-cchHHhCCcCCEEECcC-CcCCChHHhHHHH-cCCCcceeeccC-CcccchhhHHHHHHHHcC
Confidence            777777763 333221 12223567777777776 44443 2233332 477777777777 3344321  233444577


Q ss_pred             CCCeeeccc
Q psy9585         172 NLTHINISW  180 (189)
Q Consensus       172 ~L~~L~l~~  180 (189)
                      +|+.||-..
T Consensus       141 ~Lk~LD~~~  149 (175)
T PF14580_consen  141 SLKVLDGQD  149 (175)
T ss_dssp             T-SEETTEE
T ss_pred             hhheeCCEE
Confidence            777776543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.08  E-value=0.00033  Score=49.86  Aligned_cols=107  Identities=19%  Similarity=0.261  Sum_probs=37.1

Q ss_pred             CcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCC
Q psy9585          66 NWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCA  145 (189)
Q Consensus        66 ~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~  145 (189)
                      ..+.+++.+.  .++  .++.+..... +|+.|+++++.-..-+++    ..+++|++|.+++ ..++.-. ..+...+|
T Consensus        20 ~~~~L~L~~n--~I~--~Ie~L~~~l~-~L~~L~Ls~N~I~~l~~l----~~L~~L~~L~L~~-N~I~~i~-~~l~~~lp   88 (175)
T PF14580_consen   20 KLRELNLRGN--QIS--TIENLGATLD-KLEVLDLSNNQITKLEGL----PGLPRLKTLDLSN-NRISSIS-EGLDKNLP   88 (175)
T ss_dssp             --------------------S--TT-T-T--EEE-TTS--S--TT--------TT--EEE--S-S---S-C-HHHHHH-T
T ss_pred             cccccccccc--ccc--cccchhhhhc-CCCEEECCCCCCccccCc----cChhhhhhcccCC-CCCCccc-cchHHhCC
Confidence            3455666544  222  2444443333 499999998632222222    2578999999998 5666421 23444589


Q ss_pred             CCCEEecCCCCCCCH-HHHHHHHhcCCCCCeeecccCcCcCC
Q psy9585         146 KLQRLDLASCSFITD-QSLKALADGCRNLTHINISWCINITE  186 (189)
Q Consensus       146 ~L~~L~L~~c~~i~~-~~l~~l~~~~~~L~~L~l~~c~~lt~  186 (189)
                      +|++|.|++ ..|.+ ..+..+. .+|+|+.|++.+++ +++
T Consensus        89 ~L~~L~L~~-N~I~~l~~l~~L~-~l~~L~~L~L~~NP-v~~  127 (175)
T PF14580_consen   89 NLQELYLSN-NKISDLNELEPLS-SLPKLRVLSLEGNP-VCE  127 (175)
T ss_dssp             T--EEE-TT-S---SCCCCGGGG-G-TT--EEE-TT-G-GGG
T ss_pred             cCCEEECcC-CcCCChHHhHHHH-cCCCcceeeccCCc-ccc
Confidence            999999998 55654 2245554 48999999999985 544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.08  E-value=0.00059  Score=36.98  Aligned_cols=37  Identities=35%  Similarity=0.425  Sum_probs=18.3

Q ss_pred             CCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585         145 AKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT  185 (189)
Q Consensus       145 ~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt  185 (189)
                      ++|++|+|++ ..|++  +......+++|+.|++++| .++
T Consensus         1 ~~L~~L~l~~-N~i~~--l~~~l~~l~~L~~L~l~~N-~i~   37 (44)
T PF12799_consen    1 KNLEELDLSN-NQITD--LPPELSNLPNLETLNLSNN-PIS   37 (44)
T ss_dssp             TT-SEEEETS-SS-SS--HGGHGTTCTTSSEEEETSS-CCS
T ss_pred             CcceEEEccC-CCCcc--cCchHhCCCCCCEEEecCC-CCC
Confidence            3566666666 33543  2332234666666666666 344

...

>KOG3207|consensus

Probab=97.06  E-value=0.00032  Score=56.03  Aligned_cols=86  Identities=20%  Similarity=0.279  Sum_probs=64.3

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCC---CHHHHHHHHhcC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFI---TDQSLKALADGC  170 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i---~~~~l~~l~~~~  170 (189)
                      +|+.+.+.++ .+.+.........|++++.|+|+...--....+..|+..+|+|+.|+|+. ..+   .++....   ..
T Consensus       122 kL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~~~---~l  196 (505)
T KOG3207|consen  122 KLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSNTTL---LL  196 (505)
T ss_pred             hhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCccccchh---hh
Confidence            4888889885 56666655677799999999999854455678899999999999999986 222   1211221   35


Q ss_pred             CCCCeeecccCcCcC
Q psy9585         171 RNLTHINISWCINIT  185 (189)
Q Consensus       171 ~~L~~L~l~~c~~lt  185 (189)
                      ++|+.|.|+.| .++
T Consensus       197 ~~lK~L~l~~C-Gls  210 (505)
T KOG3207|consen  197 SHLKQLVLNSC-GLS  210 (505)
T ss_pred             hhhheEEeccC-CCC
Confidence            78999999999 565

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.81  E-value=0.023  Score=43.24  Aligned_cols=72  Identities=19%  Similarity=0.297  Sum_probs=52.5

Q ss_pred             HHHcCCCcceEecccCCCCCHHHHHHHH----HcCCCCCEEecCCCCCCCHHHHHHHHhcC---CCCCeeecccCcCcCC
Q psy9585         114 LAQYCNNVEDINLNLCKKLTDATSLALS----KHCAKLQRLDLASCSFITDQSLKALADGC---RNLTHINISWCINITE  186 (189)
Q Consensus       114 l~~~~~~L~~L~l~~~~~i~~~~~~~l~----~~~~~L~~L~L~~c~~i~~~~l~~l~~~~---~~L~~L~l~~c~~lt~  186 (189)
                      ...+-.+|+.+.+.. +.|..+++..+.    .++.+|+.|+|.. ..+|..+-..++...   +.|+.|++.+| .++.
T Consensus       180 ~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDC-lls~  256 (388)
T COG5238         180 LLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDC-LLSN  256 (388)
T ss_pred             HHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccch-hhcc
Confidence            333446788888877 567777655543    3689999999988 668888777766654   46799999999 6777


Q ss_pred             CC
Q psy9585         187 NG  188 (189)
Q Consensus       187 ~~  188 (189)
                      +|
T Consensus       257 ~G  258 (388)
T COG5238         257 EG  258 (388)
T ss_pred             cc
Confidence            66

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.80  E-value=3e-05  Score=45.18  Aligned_cols=60  Identities=23%  Similarity=0.233  Sum_probs=36.3

Q ss_pred             CCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCc
Q psy9585         119 NNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCI  182 (189)
Q Consensus       119 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~  182 (189)
                      |+|++|.++++ .++.-. ......+++|++|++++ ..++.-.-. ...++++|++|++++|.
T Consensus         1 p~L~~L~l~~n-~l~~i~-~~~f~~l~~L~~L~l~~-N~l~~i~~~-~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIP-PDSFSNLPNLETLDLSN-NNLTSIPPD-AFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEEC-TTTTTTGTTESEEEETS-SSESEEETT-TTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccC-HHHHcCCCCCCEeEccC-CccCccCHH-HHcCCCCCCEEeCcCCc
Confidence            56788888775 444211 12234578888888887 335422222 23457888888888873

...

>PLN03210 Resistant to P

Probab=96.72  E-value=0.0017  Score=59.22  Aligned_cols=41  Identities=20%  Similarity=0.330  Sum_probs=25.3

Q ss_pred             cCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585         143 HCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT  185 (189)
Q Consensus       143 ~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt  185 (189)
                      .+++|++|+|++|..++.-  ..-...+++|+.|++++|..++
T Consensus       867 ~l~~L~~L~L~~C~~L~~l--~~~~~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        867 KFSNLSFLDMNGCNNLQRV--SLNISKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             cCCCCCEEECCCCCCcCcc--CcccccccCCCeeecCCCcccc
Confidence            4677777777777766531  1112345677777777776654

syringae 6; Provisional

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=96.69  E-value=0.0016  Score=51.63  Aligned_cols=37  Identities=27%  Similarity=0.287  Sum_probs=33.8

Q ss_pred             hcCCCCHHHHHHHHhcCC-hhhhHHHhhhhHHHHHhhh
Q psy9585          26 INKKLPKELLLRIFSYLD-VTSLCRCAQVSKAWNILAL   62 (189)
Q Consensus        26 ~~~~LP~~il~~I~~~L~-~~~~~~~~~v~~~w~~~~~   62 (189)
                      .|++||+|+|..|...|+ ..|+.+.+.||+.||..+.
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~   40 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS   40 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence            599999999999999994 5899999999999999764

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=96.69  E-value=0.0025  Score=57.02  Aligned_cols=11  Identities=36%  Similarity=0.531  Sum_probs=5.2

Q ss_pred             CCCCCEEecCC
Q psy9585         144 CAKLQRLDLAS  154 (189)
Q Consensus       144 ~~~L~~L~L~~  154 (189)
                      +++|++|+|++
T Consensus       163 l~~L~~L~L~~  173 (968)
T PLN00113        163 FSSLKVLDLGG  173 (968)
T ss_pred             CCCCCEEECcc
Confidence            44444444444

>PLN03210 Resistant to P

Probab=96.49  E-value=0.0025  Score=58.19  Aligned_cols=62  Identities=23%  Similarity=0.366  Sum_probs=30.3

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCIN  183 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~  183 (189)
                      .+++|+.|+|.+|..+.  .+..-...+++|+.|++++|..++.-.  . ..++++|+.|++++|..
T Consensus       655 ~l~~Le~L~L~~c~~L~--~lp~si~~L~~L~~L~L~~c~~L~~Lp--~-~i~l~sL~~L~Lsgc~~  716 (1153)
T PLN03210        655 MATNLETLKLSDCSSLV--ELPSSIQYLNKLEDLDMSRCENLEILP--T-GINLKSLYRLNLSGCSR  716 (1153)
T ss_pred             cCCcccEEEecCCCCcc--ccchhhhccCCCCEEeCCCCCCcCccC--C-cCCCCCCCEEeCCCCCC
Confidence            34566666666654432  122222345666666666665443211  0 01355666666666643

syringae 6; Provisional

>KOG2739|consensus

Probab=96.40  E-value=0.00082  Score=50.18  Aligned_cols=85  Identities=24%  Similarity=0.272  Sum_probs=54.6

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCH-HHHHHHHHcCCCCCEEecCCCCC--CCHHHHHHHHhcC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD-ATSLALSKHCAKLQRLDLASCSF--ITDQSLKALADGC  170 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~L~~L~L~~c~~--i~~~~l~~l~~~~  170 (189)
                      +||+|.++.........+..++..+|+|++|++++ +++.+ +.+..+. .+++|..|++.+|..  ++|. -+.++...
T Consensus        66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~-~l~nL~~Ldl~n~~~~~l~dy-re~vf~ll  142 (260)
T KOG2739|consen   66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLK-ELENLKSLDLFNCSVTNLDDY-REKVFLLL  142 (260)
T ss_pred             hhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhh-hhcchhhhhcccCCccccccH-HHHHHHHh
Confidence            48888887754445556667777788888888888 45553 3344433 367788888888753  2222 23344446


Q ss_pred             CCCCeeecccC
Q psy9585         171 RNLTHINISWC  181 (189)
Q Consensus       171 ~~L~~L~l~~c  181 (189)
                      |+|++|+-..+
T Consensus       143 ~~L~~LD~~dv  153 (260)
T KOG2739|consen  143 PSLKYLDGCDV  153 (260)
T ss_pred             hhhcccccccc
Confidence            88888876655

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.40  E-value=0.0028  Score=29.40  Aligned_cols=22  Identities=45%  Similarity=0.617  Sum_probs=11.6

Q ss_pred             CCCCEEecCCCCCCCHHHHHHHH
Q psy9585         145 AKLQRLDLASCSFITDQSLKALA  167 (189)
Q Consensus       145 ~~L~~L~L~~c~~i~~~~l~~l~  167 (189)
                      ++|++|+|++|. |+++++..|+
T Consensus         2 ~~L~~L~l~~n~-i~~~g~~~l~   23 (24)
T PF13516_consen    2 PNLETLDLSNNQ-ITDEGASALA   23 (24)
T ss_dssp             TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred             CCCCEEEccCCc-CCHHHHHHhC
Confidence            556666666644 6666665554

...

>KOG0618|consensus

Probab=96.35  E-value=0.0028  Score=55.21  Aligned_cols=83  Identities=23%  Similarity=0.298  Sum_probs=53.1

Q ss_pred             CCccEEeecCCC--CCCHHHHHHHHHcCCCcceEecccCCCCCH---H------------------HHHHHHHcCCCCCE
Q psy9585          93 GFLRQISLRGCQ--SMTDNSLNILAQYCNNVEDINLNLCKKLTD---A------------------TSLALSKHCAKLQR  149 (189)
Q Consensus        93 ~~L~~L~l~~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~---~------------------~~~~l~~~~~~L~~  149 (189)
                      .+||.|+|++..  .+++..+.    .++.|++|.|+| +.++.   .                  .+..+. .++.|+.
T Consensus       383 ~hLKVLhLsyNrL~~fpas~~~----kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~-~l~qL~~  456 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLNSFPASKLR----KLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELA-QLPQLKV  456 (1081)
T ss_pred             cceeeeeecccccccCCHHHHh----chHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhh-hcCcceE
Confidence            468888888852  24444433    556777777777 33332   1                  112222 3688889


Q ss_pred             EecCCCCCCCHHHHHHHHhcCCCCCeeecccCcC
Q psy9585         150 LDLASCSFITDQSLKALADGCRNLTHINISWCIN  183 (189)
Q Consensus       150 L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~  183 (189)
                      +||+. ..++...+..... -|+|++|+++|+.+
T Consensus       457 lDlS~-N~L~~~~l~~~~p-~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  457 LDLSC-NNLSEVTLPEALP-SPNLKYLDLSGNTR  488 (1081)
T ss_pred             Eeccc-chhhhhhhhhhCC-CcccceeeccCCcc
Confidence            99984 7787766665443 38999999999864

>KOG2123|consensus

Probab=96.32  E-value=0.0015  Score=49.58  Aligned_cols=60  Identities=17%  Similarity=0.264  Sum_probs=32.0

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCC---CCCCCHHHHHHHHhcCCCCCeee
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLAS---CSFITDQSLKALADGCRNLTHIN  177 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~---c~~i~~~~l~~l~~~~~~L~~L~  177 (189)
                      .|++|++|.|+. +.|.+-.-..-.+++|+|++|-|..   |..-+.+.-..+.+.+|||++|+
T Consensus        61 rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   61 RCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            667777777765 2343322222234577777776654   22222333334556677777775

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=96.05  E-value=0.0069  Score=54.28  Aligned_cols=36  Identities=14%  Similarity=0.303  Sum_probs=16.7

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      +++|++|+|+++. ++......+ ..+++|++|++++|
T Consensus       211 l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n  246 (968)
T PLN00113        211 MKSLKWIYLGYNN-LSGEIPYEI-GGLTSLNHLDLVYN  246 (968)
T ss_pred             cCCccEEECcCCc-cCCcCChhH-hcCCCCCEEECcCc
Confidence            4445555554422 322222222 23566666666666

>PLN03150 hypothetical protein; Provisional

Probab=96.05  E-value=0.0087  Score=51.18  Aligned_cols=36  Identities=14%  Similarity=0.201  Sum_probs=17.1

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLAS  154 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~  154 (189)
                      .+++|+.|+|+++ .++...-.. ...+++|++|+|++
T Consensus       464 ~l~~L~~LdLs~N-~lsg~iP~~-l~~L~~L~~L~Ls~  499 (623)
T PLN03150        464 SITSLEVLDLSYN-SFNGSIPES-LGQLTSLRILNLNG  499 (623)
T ss_pred             CCCCCCEEECCCC-CCCCCCchH-HhcCCCCCEEECcC
Confidence            4555666666553 333222222 22355666666655

>KOG2982|consensus

Probab=95.81  E-value=0.0075  Score=46.38  Aligned_cols=96  Identities=14%  Similarity=0.140  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHcCCCccEEeecCCCCCCHH-HHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCC
Q psy9585          81 GPVLENISRRCGGFLRQISLRGCQSMTDN-SLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFIT  159 (189)
Q Consensus        81 ~~~l~~l~~~~~~~L~~L~l~~~~~~~~~-~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~  159 (189)
                      ...+..+...+.. ++++++.+. .+++. .+..+..+.|.|+.|+|+. +.++. .+..+.....+|++|.|.| +.+.
T Consensus        60 ~gd~~~~~~~~~~-v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~-N~L~s-~I~~lp~p~~nl~~lVLNg-T~L~  134 (418)
T KOG2982|consen   60 EGDVMLFGSSVTD-VKELDLTGN-LISDWSEIGAILEQLPALTTLNLSC-NSLSS-DIKSLPLPLKNLRVLVLNG-TGLS  134 (418)
T ss_pred             chhHHHHHHHhhh-hhhhhcccc-hhccHHHHHHHHhcCccceEeeccC-CcCCC-ccccCcccccceEEEEEcC-CCCC
Confidence            3456677777775 999999884 56654 4566788999999999986 44432 2233322357899999999 6688


Q ss_pred             HHHHHHHHhcCCCCCeeecccC
Q psy9585         160 DQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       160 ~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      -.....+....|+++.|+++.+
T Consensus       135 w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  135 WTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             hhhhhhhhhcchhhhhhhhccc
Confidence            8888888888899999988776

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.79  E-value=0.0089  Score=32.28  Aligned_cols=37  Identities=24%  Similarity=0.351  Sum_probs=22.6

Q ss_pred             CCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCC
Q psy9585         119 NNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFIT  159 (189)
Q Consensus       119 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~  159 (189)
                      ++|++|+++++ .+++  +......+++|++|+++++ .|+
T Consensus         1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N-~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNN-PIS   37 (44)
T ss_dssp             TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSS-CCS
T ss_pred             CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCC-CCC
Confidence            46788888773 5653  4442345788888888874 354

...

>KOG2739|consensus

Probab=95.64  E-value=0.0065  Score=45.48  Aligned_cols=82  Identities=18%  Similarity=0.247  Sum_probs=52.0

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCH-HHHHHHHhcCCCC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITD-QSLKALADGCRNL  173 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~-~~l~~l~~~~~~L  173 (189)
                      ++.|++.++...+...+.    ..|+|++|.++.-+.-..-++..++..+|+|++|+|++ ..|.+ ..+..+. ..++|
T Consensus        45 le~ls~~n~gltt~~~~P----~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~-~l~nL  118 (260)
T KOG2739|consen   45 LELLSVINVGLTTLTNFP----KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLK-ELENL  118 (260)
T ss_pred             hhhhhhhccceeecccCC----CcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhh-hhcch
Confidence            555555544333333322    45689999988632223346677777789999999998 66764 3344433 36788


Q ss_pred             CeeecccCc
Q psy9585         174 THINISWCI  182 (189)
Q Consensus       174 ~~L~l~~c~  182 (189)
                      ..|++++|.
T Consensus       119 ~~Ldl~n~~  127 (260)
T KOG2739|consen  119 KSLDLFNCS  127 (260)
T ss_pred             hhhhcccCC
Confidence            999999984

>KOG2982|consensus

Probab=95.58  E-value=0.011  Score=45.49  Aligned_cols=85  Identities=15%  Similarity=0.188  Sum_probs=59.5

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT  174 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~  174 (189)
                      ++-|.+.+|.-=+.-....++..++.++.|+|.+..--+...+.+|..++|.|++|+|+. ..+. ..+..+.....+|+
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~-N~L~-s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC-NSLS-SDIKSLPLPLKNLR  124 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC-CcCC-CccccCcccccceE
Confidence            344556665322334456678889999999999954445678889999999999999996 6554 33444433356889


Q ss_pred             eeecccC
Q psy9585         175 HINISWC  181 (189)
Q Consensus       175 ~L~l~~c  181 (189)
                      .|.+.|-
T Consensus       125 ~lVLNgT  131 (418)
T KOG2982|consen  125 VLVLNGT  131 (418)
T ss_pred             EEEEcCC
Confidence            8888764

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.54  E-value=0.014  Score=26.94  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=15.6

Q ss_pred             CCCcceEecccCCCCCHHHHHHHH
Q psy9585         118 CNNVEDINLNLCKKLTDATSLALS  141 (189)
Q Consensus       118 ~~~L~~L~l~~~~~i~~~~~~~l~  141 (189)
                      |++|++|+|++| .++++++..|+
T Consensus         1 ~~~L~~L~l~~n-~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNN-QITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred             CCCCCEEEccCC-cCCHHHHHHhC
Confidence            578888888886 48888887765

...

>KOG2123|consensus

Probab=94.67  E-value=0.025  Score=43.22  Aligned_cols=86  Identities=19%  Similarity=0.299  Sum_probs=57.4

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      ++++|++.|| .++|..   +....+.|+.|.|+- +.|+  .+..+. .|++|+.|.|.. ..|.+-.=..-.++.|+|
T Consensus        20 ~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSv-NkIs--sL~pl~-rCtrLkElYLRk-N~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   20 NVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSV-NKIS--SLAPLQ-RCTRLKELYLRK-NCIESLDELEYLKNLPSL   90 (388)
T ss_pred             HhhhhcccCC-CccHHH---HHHhcccceeEEeec-cccc--cchhHH-HHHHHHHHHHHh-cccccHHHHHHHhcCchh
Confidence            4888888886 455544   344678888888876 4555  344544 488888888887 556554433335668888


Q ss_pred             CeeecccCcCcCCCC
Q psy9585         174 THINISWCINITENG  188 (189)
Q Consensus       174 ~~L~l~~c~~lt~~~  188 (189)
                      +.|.|..++-....|
T Consensus        91 r~LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAG  105 (388)
T ss_pred             hhHhhccCCcccccc
Confidence            888887776554443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=94.57  E-value=0.0014  Score=37.98  Aligned_cols=59  Identities=20%  Similarity=0.206  Sum_probs=38.9

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCS  156 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~  156 (189)
                      +|++|.++++ .++.-. ......+++|++|+++++ .++.-.. .....+++|++|+++++.
T Consensus         2 ~L~~L~l~~n-~l~~i~-~~~f~~l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIP-PDSFSNLPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSS-TESEEC-TTTTTTGTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCC-CCCccC-HHHHcCCCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCCc
Confidence            4889999886 333221 123347799999999974 5543221 234568999999999853

...

>PLN03150 hypothetical protein; Provisional

Probab=94.52  E-value=0.054  Score=46.40  Aligned_cols=82  Identities=15%  Similarity=0.081  Sum_probs=55.0

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT  174 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~  174 (189)
                      ++.|.|.++. +....-. -...+++|+.|+|+++ .++.. +......+++|+.|+|+++ .++...-..+. .+++|+
T Consensus       420 v~~L~L~~n~-L~g~ip~-~i~~L~~L~~L~Ls~N-~l~g~-iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~L~  493 (623)
T PLN03150        420 IDGLGLDNQG-LRGFIPN-DISKLRHLQSINLSGN-SIRGN-IPPSLGSITSLEVLDLSYN-SFNGSIPESLG-QLTSLR  493 (623)
T ss_pred             EEEEECCCCC-ccccCCH-HHhCCCCCCEEECCCC-cccCc-CChHHhCCCCCCEEECCCC-CCCCCCchHHh-cCCCCC
Confidence            7888888753 3222112 2347899999999985 45432 2222456899999999994 46544334444 489999


Q ss_pred             eeecccCc
Q psy9585         175 HINISWCI  182 (189)
Q Consensus       175 ~L~l~~c~  182 (189)
                      .|+|++|.
T Consensus       494 ~L~Ls~N~  501 (623)
T PLN03150        494 ILNLNGNS  501 (623)
T ss_pred             EEECcCCc
Confidence            99999883

>KOG4194|consensus

Probab=94.32  E-value=0.018  Score=48.30  Aligned_cols=85  Identities=20%  Similarity=0.299  Sum_probs=41.3

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+++.+....   -..++.++....+|+.|.|.+ +.|+.-.-..+. ..|.|++|+|+. ..|+.-....+.. -+++
T Consensus       103 nLq~v~l~~N~---Lt~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~-~l~alrslDLSr-N~is~i~~~sfp~-~~ni  175 (873)
T KOG4194|consen  103 NLQEVNLNKNE---LTRIPRFGHESGHLEKLDLRH-NLISSVTSEELS-ALPALRSLDLSR-NLISEIPKPSFPA-KVNI  175 (873)
T ss_pred             cceeeeeccch---hhhcccccccccceeEEeeec-cccccccHHHHH-hHhhhhhhhhhh-chhhcccCCCCCC-CCCc
Confidence            47777776632   122333443445677777766 344432222322 245666666665 3333211111111 2456


Q ss_pred             CeeecccCcCcCC
Q psy9585         174 THINISWCINITE  186 (189)
Q Consensus       174 ~~L~l~~c~~lt~  186 (189)
                      ++|+++++ ++|+
T Consensus       176 ~~L~La~N-~It~  187 (873)
T KOG4194|consen  176 KKLNLASN-RITT  187 (873)
T ss_pred             eEEeeccc-cccc
Confidence            67777665 4554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=94.30  E-value=0.087  Score=25.31  Aligned_cols=24  Identities=33%  Similarity=0.565  Sum_probs=16.1

Q ss_pred             CCCCEEecCCCCCCCHHHHHHHHhc
Q psy9585         145 AKLQRLDLASCSFITDQSLKALADG  169 (189)
Q Consensus       145 ~~L~~L~L~~c~~i~~~~l~~l~~~  169 (189)
                      ++|++|+|++ ..+++++...|+..
T Consensus         2 ~~L~~LdL~~-N~i~~~G~~~L~~~   25 (28)
T smart00368        2 PSLRELDLSN-NKLGDEGARALAEA   25 (28)
T ss_pred             CccCEEECCC-CCCCHHHHHHHHHH
Confidence            4677777776 44777777776653

>KOG3763|consensus

Probab=94.17  E-value=0.097  Score=43.45  Aligned_cols=90  Identities=18%  Similarity=0.262  Sum_probs=61.6

Q ss_pred             HHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccC--CCCCHHHHHHHHHcCCCCCEEecCC---CCCCC
Q psy9585          85 ENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLC--KKLTDATSLALSKHCAKLQRLDLAS---CSFIT  159 (189)
Q Consensus        85 ~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~--~~i~~~~~~~l~~~~~~L~~L~L~~---c~~i~  159 (189)
                      .......+. +.+++|++.....-..+..+....|+|+.|+|++.  ..-++..+..+  +..-|++|-+.|   |+.+.
T Consensus       211 ~~~~~n~p~-i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~  287 (585)
T KOG3763|consen  211 KHIEENFPE-ILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFS  287 (585)
T ss_pred             HHhhcCCcc-eeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchh
Confidence            334445555 88999988766677778888889999999999984  12222233332  357788999988   44444


Q ss_pred             HH--HHHHHHhcCCCCCeee
Q psy9585         160 DQ--SLKALADGCRNLTHIN  177 (189)
Q Consensus       160 ~~--~l~~l~~~~~~L~~L~  177 (189)
                      +.  .+.+|...+|+|..||
T Consensus       288 ~~s~yv~~i~~~FPKL~~LD  307 (585)
T KOG3763|consen  288 DRSEYVSAIRELFPKLLRLD  307 (585)
T ss_pred             hhHHHHHHHHHhcchheeec
Confidence            43  3666777789888875

>KOG4194|consensus

Probab=94.16  E-value=0.036  Score=46.56  Aligned_cols=61  Identities=16%  Similarity=0.286  Sum_probs=30.2

Q ss_pred             cCCCcceEecccCCCCC---HHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         117 YCNNVEDINLNLCKKLT---DATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~---~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      ...+|++|+|+. +.++   +++... ...++.|+.|.|.| .++..-.=.+ ..+++.|++|++.++
T Consensus       363 ~lssL~~LdLr~-N~ls~~IEDaa~~-f~gl~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  363 GLSSLHKLDLRS-NELSWCIEDAAVA-FNGLPSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGDN  426 (873)
T ss_pred             HhhhhhhhcCcC-CeEEEEEecchhh-hccchhhhheeecC-ceeeecchhh-hccCcccceecCCCC
Confidence            345666666554 2222   112222 33467777777766 4443222222 223677777777665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.94  E-value=0.49  Score=36.36  Aligned_cols=42  Identities=17%  Similarity=0.200  Sum_probs=25.9

Q ss_pred             CCCCEEecCCCCCCCHHHHHHHH----hcCCCCCeeecccCcCcCCCC
Q psy9585         145 AKLQRLDLASCSFITDQSLKALA----DGCRNLTHINISWCINITENG  188 (189)
Q Consensus       145 ~~L~~L~L~~c~~i~~~~l~~l~----~~~~~L~~L~l~~c~~lt~~~  188 (189)
                      .+|+++.+.. ..|-.+++..++    ..|.+|+.|++.++ .+|-.|
T Consensus       185 ~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~g  230 (388)
T COG5238         185 ENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEG  230 (388)
T ss_pred             cCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhh
Confidence            3455555544 446666655543    34788999999887 565554

>PF13013 F-box-like_2: F-box-like domain

Probab=93.53  E-value=0.12  Score=33.82  Aligned_cols=30  Identities=30%  Similarity=0.356  Sum_probs=26.8

Q ss_pred             hcCCCCHHHHHHHHhcCChhhhHHHhhhhH
Q psy9585          26 INKKLPKELLLRIFSYLDVTSLCRCAQVSK   55 (189)
Q Consensus        26 ~~~~LP~~il~~I~~~L~~~~~~~~~~v~~   55 (189)
                      .+.+||+|++..||.+-...++..+...|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            478999999999999999888888888777

>KOG1859|consensus

Probab=93.52  E-value=0.045  Score=47.18  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=25.5

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      +|.|+.|+|++ ..+++..  .|. .|++|++|+|+++
T Consensus       186 l~ale~LnLsh-Nk~~~v~--~Lr-~l~~LkhLDlsyN  219 (1096)
T KOG1859|consen  186 LPALESLNLSH-NKFTKVD--NLR-RLPKLKHLDLSYN  219 (1096)
T ss_pred             HHHhhhhccch-hhhhhhH--HHH-hcccccccccccc
Confidence            57788999998 6676544  333 4899999999876

>KOG0472|consensus

Probab=93.48  E-value=0.025  Score=45.37  Aligned_cols=37  Identities=22%  Similarity=0.283  Sum_probs=27.4

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcC
Q psy9585         144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCIN  183 (189)
Q Consensus       144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~  183 (189)
                      +.+|.+|+|.+ ..+  ..+..+..+|.+|++|++.|++.
T Consensus       504 m~nL~tLDL~n-Ndl--q~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  504 MRNLTTLDLQN-NDL--QQIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             hhhcceeccCC-Cch--hhCChhhccccceeEEEecCCcc
Confidence            67788888887 433  44555677788999999988753

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.13  E-value=0.076  Score=22.32  Aligned_cols=12  Identities=25%  Similarity=0.241  Sum_probs=6.7

Q ss_pred             CCCCeeecccCc
Q psy9585         171 RNLTHINISWCI  182 (189)
Q Consensus       171 ~~L~~L~l~~c~  182 (189)
                      ++|+.|+|++|.
T Consensus         1 ~~L~~L~l~~n~   12 (17)
T PF13504_consen    1 PNLRTLDLSNNR   12 (17)
T ss_dssp             TT-SEEEETSS-
T ss_pred             CccCEEECCCCC
Confidence            456777777763

...

>KOG1644|consensus

Probab=91.52  E-value=0.16  Score=37.09  Aligned_cols=83  Identities=16%  Similarity=0.191  Sum_probs=44.2

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCH-HHHHHHHHcCCCCCEEecCCCCCCCHHHHHH--HHhcC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD-ATSLALSKHCAKLQRLDLASCSFITDQSLKA--LADGC  170 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~--l~~~~  170 (189)
                      .|..|.+.+. .++.-+ ..+....|+|+.|.|.+ +.+-. ..+..++ .||.|++|.+-+ ..+++..-..  +....
T Consensus        65 rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa-~~p~L~~Ltll~-Npv~~k~~YR~yvl~kl  139 (233)
T KOG1644|consen   65 RLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTN-NSIQELGDLDPLA-SCPKLEYLTLLG-NPVEHKKNYRLYVLYKL  139 (233)
T ss_pred             ccceEEecCC-cceeec-cchhhhccccceEEecC-cchhhhhhcchhc-cCCccceeeecC-CchhcccCceeEEEEec
Confidence            3777777663 343322 12334557777777776 22221 2233333 377888887776 4455443111  22235


Q ss_pred             CCCCeeecccC
Q psy9585         171 RNLTHINISWC  181 (189)
Q Consensus       171 ~~L~~L~l~~c  181 (189)
                      |+|+.|++...
T Consensus       140 p~l~~LDF~kV  150 (233)
T KOG1644|consen  140 PSLRTLDFQKV  150 (233)
T ss_pred             CcceEeehhhh
Confidence            77777777654

>KOG0444|consensus

Probab=91.22  E-value=0.018  Score=48.80  Aligned_cols=10  Identities=40%  Similarity=0.647  Sum_probs=6.7

Q ss_pred             CccEEeecCC
Q psy9585          94 FLRQISLRGC  103 (189)
Q Consensus        94 ~L~~L~l~~~  103 (189)
                      +|++|+|++.
T Consensus       246 ~LrrLNLS~N  255 (1255)
T KOG0444|consen  246 NLRRLNLSGN  255 (1255)
T ss_pred             hhheeccCcC
Confidence            3777777763

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=91.16  E-value=0.16  Score=24.01  Aligned_cols=26  Identities=38%  Similarity=0.652  Sum_probs=16.3

Q ss_pred             CCCEEecCCCCCCCHHHHHHHHhcCC
Q psy9585         146 KLQRLDLASCSFITDQSLKALADGCR  171 (189)
Q Consensus       146 ~L~~L~L~~c~~i~~~~l~~l~~~~~  171 (189)
                      +|++|.|..+..-.+..++.+..+||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            36677777655444456777776665

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG0444|consensus

Probab=91.04  E-value=0.079  Score=45.16  Aligned_cols=33  Identities=12%  Similarity=0.231  Sum_probs=16.4

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEeccc
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNL  128 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~  128 (189)
                      +|++|.|++. .+....+..+. +.+.|+.|++++
T Consensus       174 ~LqtL~Ls~N-PL~hfQLrQLP-smtsL~vLhms~  206 (1255)
T KOG0444|consen  174 MLQTLKLSNN-PLNHFQLRQLP-SMTSLSVLHMSN  206 (1255)
T ss_pred             hhhhhhcCCC-hhhHHHHhcCc-cchhhhhhhccc
Confidence            3777777764 22222333222 344555556655

>KOG0274|consensus

Probab=90.98  E-value=0.097  Score=43.99  Aligned_cols=46  Identities=37%  Similarity=0.548  Sum_probs=39.5

Q ss_pred             chhhhcCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCc
Q psy9585          22 DEALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNW   67 (189)
Q Consensus        22 ~~~~~~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~   67 (189)
                      ...+.+..||.|+...|+.||+.+++..+++||+.|+.+..+-..|
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~  148 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVW  148 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchh
Confidence            3457789999999999999999999999999999999987554433

>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins

Probab=90.91  E-value=0.23  Score=31.66  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=23.3

Q ss_pred             hhcCCCCHHHHHHHHhcCChhhhHHH
Q psy9585          25 LINKKLPKELLLRIFSYLDVTSLCRC   50 (189)
Q Consensus        25 ~~~~~LP~~il~~I~~~L~~~~~~~~   50 (189)
                      ..|..||.|+...|+++|+..|+..+
T Consensus        70 ~~w~~LP~EIk~~Il~~L~~~dL~~l   95 (97)
T PF09372_consen   70 NYWNILPIEIKYKILEYLSNKDLKKL   95 (97)
T ss_pred             CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence            77999999999999999999887543

The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.

>KOG1644|consensus

Probab=87.70  E-value=0.2  Score=36.55  Aligned_cols=36  Identities=25%  Similarity=0.347  Sum_probs=15.6

Q ss_pred             CCCCCEEecCCCCCCCHH-HHHHHHhcCCCCCeeecccC
Q psy9585         144 CAKLQRLDLASCSFITDQ-SLKALADGCRNLTHINISWC  181 (189)
Q Consensus       144 ~~~L~~L~L~~c~~i~~~-~l~~l~~~~~~L~~L~l~~c  181 (189)
                      +|+|.+|.|.+ ..|..- .+..++. ||+|++|.+-++
T Consensus        87 ~p~l~~L~Ltn-Nsi~~l~dl~pLa~-~p~L~~Ltll~N  123 (233)
T KOG1644|consen   87 LPNLKTLILTN-NSIQELGDLDPLAS-CPKLEYLTLLGN  123 (233)
T ss_pred             ccccceEEecC-cchhhhhhcchhcc-CCccceeeecCC
Confidence            45555555554 223221 1333332 555555555444

>PRK15386 type III secretion protein GogB; Provisional

Probab=86.43  E-value=0.51  Score=38.35  Aligned_cols=72  Identities=18%  Similarity=0.336  Sum_probs=45.4

Q ss_pred             HcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhc
Q psy9585          90 RCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADG  169 (189)
Q Consensus        90 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~  169 (189)
                      .|. ++++|.+++| .++     .+..-.++|++|.+++|..++.  +....  .++|++|.+++|..+..     +   
T Consensus        50 ~~~-~l~~L~Is~c-~L~-----sLP~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~s-----L---  110 (426)
T PRK15386         50 EAR-ASGRLYIKDC-DIE-----SLPVLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEISG-----L---  110 (426)
T ss_pred             Hhc-CCCEEEeCCC-CCc-----ccCCCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCcccccc-----c---
Confidence            354 4999999997 322     1111234799999999987632  22211  36899999999876641     1   


Q ss_pred             CCCCCeeeccc
Q psy9585         170 CRNLTHINISW  180 (189)
Q Consensus       170 ~~~L~~L~l~~  180 (189)
                      -+.|+.|++.+
T Consensus       111 P~sLe~L~L~~  121 (426)
T PRK15386        111 PESVRSLEIKG  121 (426)
T ss_pred             ccccceEEeCC
Confidence            13466666643

>KOG1259|consensus

Probab=85.19  E-value=1  Score=35.16  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=17.5

Q ss_pred             CCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCC
Q psy9585         118 CNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLAS  154 (189)
Q Consensus       118 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~  154 (189)
                      .|.++.|.++. +.+.  .+..+ +.+++|+.|+|++
T Consensus       306 ~Pkir~L~lS~-N~i~--~v~nL-a~L~~L~~LDLS~  338 (490)
T KOG1259|consen  306 APKLRRLILSQ-NRIR--TVQNL-AELPQLQLLDLSG  338 (490)
T ss_pred             ccceeEEeccc-ccee--eehhh-hhcccceEeeccc
Confidence            45666666665 3333  12232 2356666666666

>KOG0618|consensus

Probab=84.97  E-value=0.12  Score=45.69  Aligned_cols=56  Identities=16%  Similarity=0.366  Sum_probs=36.8

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCC---CCHHHHHHHHHcCCCCCEEecCCCCCC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKK---LTDATSLALSKHCAKLQRLDLASCSFI  158 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~---i~~~~~~~l~~~~~~L~~L~L~~c~~i  158 (189)
                      |+.|.+.+ ..++|..+..+. .+++|+.|+|+. ++   +++..+.    +++.|+.|+|+| ..+
T Consensus       361 Lq~Lylan-N~Ltd~c~p~l~-~~~hLKVLhLsy-NrL~~fpas~~~----kle~LeeL~LSG-NkL  419 (1081)
T KOG0618|consen  361 LQELYLAN-NHLTDSCFPVLV-NFKHLKVLHLSY-NRLNSFPASKLR----KLEELEELNLSG-NKL  419 (1081)
T ss_pred             HHHHHHhc-Ccccccchhhhc-cccceeeeeecc-cccccCCHHHHh----chHHhHHHhccc-chh
Confidence            44444544 356777776554 889999999998 33   4444433    357788899988 434

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=84.91  E-value=1  Score=39.69  Aligned_cols=10  Identities=30%  Similarity=0.474  Sum_probs=5.7

Q ss_pred             CCCCEEecCC
Q psy9585         145 AKLQRLDLAS  154 (189)
Q Consensus       145 ~~L~~L~L~~  154 (189)
                      ++|+.|+|++
T Consensus       302 ~~L~~LdLS~  311 (788)
T PRK15387        302 PGLQELSVSD  311 (788)
T ss_pred             cccceeECCC
Confidence            4556666655

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=84.67  E-value=0.46  Score=21.22  Aligned_cols=13  Identities=38%  Similarity=0.483  Sum_probs=9.0

Q ss_pred             CCCeeecccCcCcC
Q psy9585         172 NLTHINISWCINIT  185 (189)
Q Consensus       172 ~L~~L~l~~c~~lt  185 (189)
                      +|++|++++| .++
T Consensus         1 ~L~~Ldls~n-~l~   13 (22)
T PF00560_consen    1 NLEYLDLSGN-NLT   13 (22)
T ss_dssp             TESEEEETSS-EES
T ss_pred             CccEEECCCC-cCE
Confidence            4677888777 554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3926|consensus

Probab=84.45  E-value=0.52  Score=35.78  Aligned_cols=54  Identities=22%  Similarity=0.230  Sum_probs=42.3

Q ss_pred             ccccchhhhcCCCCHHHHHHHHhcCCh-hhhHHHhhhhHHHHHhhhCCCCcceee
Q psy9585          18 VFLEDEALINKKLPKELLLRIFSYLDV-TSLCRCAQVSKAWNILALDGSNWSRID   71 (189)
Q Consensus        18 ~~~~~~~~~~~~LP~~il~~I~~~L~~-~~~~~~~~v~~~w~~~~~~~~~~~~~~   71 (189)
                      ..+......+.+||.+++..|+..++. .|+..+++|......+..+..+|+.+.
T Consensus       193 ~~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLc  247 (332)
T KOG3926|consen  193 TEPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLC  247 (332)
T ss_pred             cCCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            334445677999999999999998865 889899988888777776666777664

>KOG4237|consensus

Probab=83.27  E-value=0.93  Score=36.59  Aligned_cols=64  Identities=23%  Similarity=0.217  Sum_probs=32.7

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT  185 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt  185 (189)
                      ..++|++|+|++ +.++.-.-.+ +.....|+.|.|.. ..+. ..-....++...|+.|+++++ ++|
T Consensus       272 ~L~~L~~lnlsn-N~i~~i~~~a-Fe~~a~l~eL~L~~-N~l~-~v~~~~f~~ls~L~tL~L~~N-~it  335 (498)
T KOG4237|consen  272 KLPNLRKLNLSN-NKITRIEDGA-FEGAAELQELYLTR-NKLE-FVSSGMFQGLSGLKTLSLYDN-QIT  335 (498)
T ss_pred             hcccceEeccCC-Cccchhhhhh-hcchhhhhhhhcCc-chHH-HHHHHhhhccccceeeeecCC-eeE
Confidence            556677777766 4454322222 22244555555554 2222 111223445677888888776 454

>KOG1259|consensus

Probab=83.24  E-value=0.51  Score=36.79  Aligned_cols=59  Identities=22%  Similarity=0.199  Sum_probs=38.8

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCc
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCI  182 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~  182 (189)
                      .++-|++|+|++ +.|+  .+..-.+-.|.++.|++++ ..|+..+-  ++ ..++|.+|+++++.
T Consensus       282 TWq~LtelDLS~-N~I~--~iDESvKL~Pkir~L~lS~-N~i~~v~n--La-~L~~L~~LDLS~N~  340 (490)
T KOG1259|consen  282 TWQELTELDLSG-NLIT--QIDESVKLAPKLRRLILSQ-NRIRTVQN--LA-ELPQLQLLDLSGNL  340 (490)
T ss_pred             hHhhhhhccccc-cchh--hhhhhhhhccceeEEeccc-cceeeehh--hh-hcccceEeecccch
Confidence            455688889988 4444  2222233368999999998 55653322  33 26899999999873

>KOG4658|consensus

Probab=82.57  E-value=1.2  Score=40.00  Aligned_cols=38  Identities=16%  Similarity=0.090  Sum_probs=21.5

Q ss_pred             HHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCC
Q psy9585         115 AQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLAS  154 (189)
Q Consensus       115 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~  154 (189)
                      ....|.|..|+|++|..+.  .++.....+-+|++|+|++
T Consensus       567 f~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~  604 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSD  604 (889)
T ss_pred             HhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccC
Confidence            3466777777777654433  2222233355666666666

>KOG4308|consensus

Probab=82.34  E-value=0.41  Score=39.75  Aligned_cols=12  Identities=33%  Similarity=0.681  Sum_probs=5.7

Q ss_pred             CCCCCeeecccC
Q psy9585         170 CRNLTHINISWC  181 (189)
Q Consensus       170 ~~~L~~L~l~~c  181 (189)
                      |++++.|.+++.
T Consensus       289 ~~~l~~l~l~~n  300 (478)
T KOG4308|consen  289 CRQLEELSLSNN  300 (478)
T ss_pred             hHHHHHhhcccC
Confidence            444445544443

>KOG4579|consensus

Probab=81.23  E-value=0.79  Score=31.62  Aligned_cols=83  Identities=18%  Similarity=0.129  Sum_probs=47.5

Q ss_pred             eeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCC
Q psy9585          69 RIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQ  148 (189)
Q Consensus        69 ~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~  148 (189)
                      .++++.++-..-.+.+..+....  .|+..++++...  ...-+.+...++.++.|+|.+ +.+.+--.. + ..+|.|+
T Consensus        31 ~ldLssc~lm~i~davy~l~~~~--el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~-neisdvPeE-~-Aam~aLr  103 (177)
T KOG4579|consen   31 FLDLSSCQLMYIADAVYMLSKGY--ELTKISLSDNGF--KKFPKKFTIKFPTATTLNLAN-NEISDVPEE-L-AAMPALR  103 (177)
T ss_pred             hcccccchhhHHHHHHHHHhCCc--eEEEEecccchh--hhCCHHHhhccchhhhhhcch-hhhhhchHH-H-hhhHHhh
Confidence            34555443222234444443333  377788877421  111234555778899999988 556543333 3 3489999


Q ss_pred             EEecCCCCCCC
Q psy9585         149 RLDLASCSFIT  159 (189)
Q Consensus       149 ~L~L~~c~~i~  159 (189)
                      .|++.. ..+.
T Consensus       104 ~lNl~~-N~l~  113 (177)
T KOG4579|consen  104 SLNLRF-NPLN  113 (177)
T ss_pred             hccccc-Cccc
Confidence            999998 4454

>KOG3735|consensus

Probab=80.84  E-value=4.8  Score=31.71  Aligned_cols=87  Identities=20%  Similarity=0.271  Sum_probs=60.7

Q ss_pred             HcCCCccEEeecCCCCCCHHHHHHHHHc---CCCcceEecccCCCCCHHH---HHHHHHcCCCCCEEecCCCCCCCHHHH
Q psy9585          90 RCGGFLRQISLRGCQSMTDNSLNILAQY---CNNVEDINLNLCKKLTDAT---SLALSKHCAKLQRLDLASCSFITDQSL  163 (189)
Q Consensus        90 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~i~~~~---~~~l~~~~~~L~~L~L~~c~~i~~~~l  163 (189)
                      .+.+.++.+++++...++...+..+...   ....+.+++.+ ...++..   +..+...++.|++|++.+ ..||..++
T Consensus       195 ~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~-tr~~d~vA~a~a~ml~~n~sl~slnves-nFItg~gi  272 (353)
T KOG3735|consen  195 ENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLAN-TRSSDPVAFAIAEMLKENKSLTSLNVES-NFITGLGI  272 (353)
T ss_pred             cCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhc-ccCCchhHHHHHHHHhhcchhhheeccc-cccccHHH
Confidence            3344599999999888988887766544   34577777776 4455433   334445789999999998 78999998


Q ss_pred             HHHHhcCC---CCCeeec
Q psy9585         164 KALADGCR---NLTHINI  178 (189)
Q Consensus       164 ~~l~~~~~---~L~~L~l  178 (189)
                      .++.+...   .|..|.+
T Consensus       273 ~a~~~al~~n~tl~el~~  290 (353)
T KOG3735|consen  273 MALLRALQSNKSLTELKN  290 (353)
T ss_pred             HHHHHHHhccchhhHhhh
Confidence            88876443   3444444

>KOG4658|consensus

Probab=80.04  E-value=1.3  Score=39.68  Aligned_cols=82  Identities=16%  Similarity=0.146  Sum_probs=47.5

Q ss_pred             CCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q psy9585          93 GFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRN  172 (189)
Q Consensus        93 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~  172 (189)
                      +.|+.|+++++...  ..++..+..+-+|+.|+++++ .+.  .++.=...++.|.+|++..+....  .+..+....++
T Consensus       571 ~~LrVLDLs~~~~l--~~LP~~I~~Li~LryL~L~~t-~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~--~~~~i~~~L~~  643 (889)
T KOG4658|consen  571 PLLRVLDLSGNSSL--SKLPSSIGELVHLRYLDLSDT-GIS--HLPSGLGNLKKLIYLNLEVTGRLE--SIPGILLELQS  643 (889)
T ss_pred             cceEEEECCCCCcc--CcCChHHhhhhhhhcccccCC-Ccc--ccchHHHHHHhhheeccccccccc--cccchhhhccc
Confidence            35888899875432  233333445668888888884 454  222223345677788887644321  11334444677


Q ss_pred             CCeeecccC
Q psy9585         173 LTHINISWC  181 (189)
Q Consensus       173 L~~L~l~~c  181 (189)
                      |++|.+..-
T Consensus       644 Lr~L~l~~s  652 (889)
T KOG4658|consen  644 LRVLRLPRS  652 (889)
T ss_pred             ccEEEeecc
Confidence            777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	189
1fqv_A	336	Insights Into Scf Ubiquitin Ligases From The Struct		2e-11
1fs2_A	272	Insights Into Scf Ubiquitin Ligases From The Struct		2e-10

>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 336

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 21/175 (12%)
Query: 30  LPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLF--NFQTDVEGPVLEN- 86
           LP ELLL IFS L +  L + + V K W  LA D S W  +DL   N   DV G +L   
Sbjct: 12  LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQG 71
Query: 87  -ISRRCG-GFLRQ-----ISLRGCQSM-TDNSL-------NILAQYCNNVEDINLNLCKK 131
            I+ RC   F+ Q      S    Q M   NS+        IL+Q C+ +++++L    +
Sbjct: 72  VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ-CSKLQNLSLE-GLR 129
Query: 132 LTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITE 186
           L+D     L+K+ + L RL+L+ CS  ++ +L+ L   C  L  +N+SWC + TE
Sbjct: 130 LSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183

>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 272

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 74/163 (45%), Gaps = 35/163 (21%)
Query: 30  LPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQ------TDVEGPV 83
           LP ELLL IFS L +  L + + V K W  LA D S W  +D F  Q      + +E   
Sbjct: 12  LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDEFRVQHMDLSNSVIEVST 71
Query: 84  LENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH 143
           L  I  +C   L+ +SL G + ++D  +N LA+  N                        
Sbjct: 72  LHGILSQCSK-LQNLSLEGLR-LSDPIVNTLAKNSN------------------------ 105
Query: 144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITE 186
              L RL+L+ CS  ++ +L+ L   C  L  +N+SWC + TE
Sbjct: 106 ---LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	189
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-34
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-19
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-16
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-28
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-17
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-24
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	2e-20
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	5e-16
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-11
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-11
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	7e-10
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	3e-09
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	8e-09
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	8e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  123 bits (309), Expect = 2e-34
 Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 19/178 (10%)

Query: 28  KKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLF--NFQTDVEGPVLE 85
             LP ELLL IFS L +  L + + V K W  LA D S W  +DL   N   DV G +L 
Sbjct: 10  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLS 69

Query: 86  N--ISRRCGGFLRQISLRGCQS-------------MTDNSLNILAQYCNNVEDINLNLCK 130
              I+ RC        L    S             +  ++L+ +   C+ +++++L   +
Sbjct: 70  QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 129

Query: 131 KLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
            L+D     L+K+   L RL+L+ CS  ++ +L+ L   C  L  +N+SWC + TE  
Sbjct: 130 -LSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 82.6 bits (204), Expect = 2e-19
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 84  LENISRRCGGFLRQISLRGCQSMTDNSLN-ILAQYCNNVEDINLNLC-KKLTDATSLALS 141
           L+ +   C   L +++L  C   T+  +   +A     +  +NL+   K L  +    L 
Sbjct: 160 LQTLLSSCSR-LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218

Query: 142 KHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           + C  L  LDL+    + +   +        L H+++S C +I    
Sbjct: 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPET 264

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 74.9 bits (184), Expect = 2e-16
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 3/100 (3%)

Query: 84  LENISRRCGGFLRQISLRGC-QSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSK 142
           ++         + Q++L G  +++  + L+ L + C N+  ++L+    L +        
Sbjct: 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF- 244

Query: 143 HCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCI 182
               LQ L L+ C  I  ++L  L +    L  + +   +
Sbjct: 245 QLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGIV 283

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 62.2 bits (151), Expect = 5e-12
 Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 7/130 (5%)

Query: 46  SLCRCAQVSKA--WNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGC 103
           +L  C   ++      +A      ++++L  ++ +++   L  + RRC   L  + L   
Sbjct: 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN-LVHLDLSDS 232

Query: 104 QSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSL 163
             + ++      Q  N ++ ++L+ C  +   T L L      L+ L +     + D +L
Sbjct: 233 VMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDGTL 288

Query: 164 KALADGCRNL 173
           + L +   +L
Sbjct: 289 QLLKEALPHL 298

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  109 bits (273), Expect = 3e-28
 Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 22/170 (12%)

Query: 26  INKKLPKELLLRIFSYLDVTS-LCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVL 84
           I    P+E+L  +FS++ +       + V K+W     +   W R  +F    +      
Sbjct: 5   IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSW----YEIERWCRRKVFIG--NCYAVSP 58

Query: 85  ENISRRCGGFLRQISLRGCQSMTDNSL-------------NILAQYCNNVEDINLNLCKK 131
             + RR    +R + L+G     D +L               ++     +E+I L     
Sbjct: 59  ATVIRRFPK-VRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV- 116

Query: 132 LTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181
           +TD     ++K     + L L+SC   +   L A+A  CRNL  +++   
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 78.8 bits (194), Expect = 1e-17
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 4/143 (2%)

Query: 46  SLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQS 105
            L R   + K   +L         +    +  +V   V   +S    G      L G   
Sbjct: 217 KLNRAVPLEKLATLLQ-RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275

Query: 106 MTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKA 165
                L  +   C+ +  +NL+    +     + L   C KLQRL +    +I D  L+ 
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYA-TVQSYDLVKLLCQCPKLQRLWV--LDYIEDAGLEV 332

Query: 166 LADGCRNLTHINISWCINITENG 188
           LA  C++L  + +          
Sbjct: 333 LASTCKDLRELRVFPSEPFVMEP 355

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 73.4 bits (180), Expect = 9e-16
 Identities = 38/203 (18%), Positives = 65/203 (32%), Gaps = 41/203 (20%)

Query: 15  LTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVS-KAWNILALDGSNWSRIDLF 73
           L R+ + D+ L       EL+ + F    V  L  C   S      +A    N   +DL 
Sbjct: 112 LKRMVVTDDCL-------ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164

Query: 74  NFQ-TDVEGPVLENISRRCGGFLRQISLRGCQSM-TDNSLNILAQYCNNVEDINLNLCKK 131
                DV G  L +        L  +++    S  + ++L  L   C N++ + LN    
Sbjct: 165 ESDVDDVSGHWLSHFPDTYTS-LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223

Query: 132 LTDATSLALSKHCAKLQRLDLASCSF----------------------------ITDQSL 163
           L    +L   +   +L+ L     +                                  L
Sbjct: 224 LEKLATLL--QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYL 281

Query: 164 KALADGCRNLTHINISWCINITE 186
            A+   C  LT +N+S+    + 
Sbjct: 282 PAVYSVCSRLTTLNLSYATVQSY 304

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 69.9 bits (171), Expect = 2e-14
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 90  RCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQR 149
           R      +          D     + ++C ++    L+L   LTD     +  +  K++ 
Sbjct: 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR--RLSLSGLLTDKVFEYIGTYAKKMEM 460

Query: 150 LDLASCSFITDQSLKALADGCRNLTHINISWCINITE 186
           L +A     +D  +  +  GC +L  + I  C    +
Sbjct: 461 LSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 66.1 bits (161), Expect = 3e-13
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 6/105 (5%)

Query: 84  LENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH 143
              I   C   LR++SL G   +TD     +  Y   +E +++      +D     +   
Sbjct: 424 FGAIVEHCKD-LRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSG 479

Query: 144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           C  L++L++  C    D++L A A     +  + +S C +++   
Sbjct: 480 CDSLRKLEIRDCP-FGDKALLANASKLETMRSLWMSSC-SVSFGA 522

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.5 bits (149), Expect = 1e-11
 Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 12/172 (6%)

Query: 22  DEAL--INKKLPKELLLRIFSYLDVTSLCRCAQVS-KAWNILALDGSNWSRIDLFNFQTD 78
           + AL  I +  P     R+             +     +  +     +  R+ L    TD
Sbjct: 386 NAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTD 445

Query: 79  VEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSL 138
               V E I       +  +S+      +D  ++ +   C+++  + +  C    D   L
Sbjct: 446 K---VFEYIGTYAKK-MEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALL 499

Query: 139 ALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT--HINISWCINITENG 188
           A +     ++ L ++SCS ++  + K L      L    I+     +     
Sbjct: 500 ANASKLETMRSLWMSSCS-VSFGACKLLGQKMPKLNVEVIDERGAPDSRPES 550

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 97.3 bits (242), Expect = 4e-24
 Identities = 27/175 (15%), Positives = 61/175 (34%), Gaps = 23/175 (13%)

Query: 30  LPKELLLRIFSYLDVTS-LCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENIS 88
              +++ ++ +Y+         + V + W    +D      + +    T       + +S
Sbjct: 16  TVDDVIEQVMTYITDPKDRDSASLVCRRW--FKIDSETREHVTMALCYT----ATPDRLS 69

Query: 89  RRCGGFLRQISLRGCQSMTDNSLNI-------------LAQYCNNVEDINLNLCKKLTDA 135
           RR    LR + L+G       +L               ++     ++ ++      ++D 
Sbjct: 70  RRFPN-LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDL 127

Query: 136 TSLALSK-HCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENGK 189
               L+K     L+ L L  CS  T   L ++   CR +  + +       ++GK
Sbjct: 128 DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK 182

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 70.4 bits (172), Expect = 1e-14
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 94  FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLA 153
           F R++   G   M  N + IL  +   +  ++L      T+     L + C  L+ L+  
Sbjct: 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED-HCTLIQKCPNLEVLETR 326

Query: 154 SCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           +   I D+ L+ LA  C+ L  + I    +     
Sbjct: 327 NV--IGDRGLEVLAQYCKQLKRLRIERGADEQGME 359

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 70.4 bits (172), Expect = 1e-14
 Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 2/98 (2%)

Query: 84  LENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH 143
           + ++   C    R         +TD  L+ + QY  NV  + L      +D   +  S+ 
Sbjct: 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRG 486

Query: 144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC 181
           C  LQ+L++  C   +++++ A      +L ++ +   
Sbjct: 487 CPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY 523

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 67.3 bits (164), Expect = 1e-13
 Identities = 18/198 (9%), Positives = 60/198 (30%), Gaps = 30/198 (15%)

Query: 15  LTRVFLEDEALINKKLPKELLLRIFSYLDVTSLCRCAQVS-KAWNILALDGSNWSRIDL- 72
             R+ + D  L        L       L+   L +C+  +      +         + + 
Sbjct: 119 FRRMIVSDLDL------DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172

Query: 73  FNFQTDVEGPVLENISRRCGGF-LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKK 131
            +  ++ +G  L  +++      +    +     ++   L  +A+ C ++  + +   + 
Sbjct: 173 ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232

Query: 132 LTDATSLALSKHCAKL---------------------QRLDLASCSFITDQSLKALADGC 170
           L        + +  +                      ++L     S++    +  L    
Sbjct: 233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292

Query: 171 RNLTHINISWCINITENG 188
             +  +++ + +  TE+ 
Sbjct: 293 AQIRKLDLLYALLETEDH 310

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 66.9 bits (163), Expect = 2e-13
 Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 4/121 (3%)

Query: 69  RIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNL 128
           R   +  Q  +    L  I +     +R + L      +D  L   ++ C N++ + +  
Sbjct: 440 RFAFYLRQGGLTDLGLSYIGQYSPN-VRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRG 497

Query: 129 CKKLTDATSLALSKHCAKLQRLDLASCSF-ITDQSLKALADGCRNLTHINISWCINITEN 187
           C   ++    A       L+ L +      +T Q L  +A    N+  I       + + 
Sbjct: 498 CC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQ 556

Query: 188 G 188
           G
Sbjct: 557 G 557

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 66.5 bits (162), Expect = 2e-13
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 9/112 (8%)

Query: 84  LENISRRCGGF--LRQISLRGCQSMTDNSLNI----LAQYCNNVEDINLNL-CKKLTDAT 136
           LE+I          R + L   + +TD  L+     L   C  +      L    LTD  
Sbjct: 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454

Query: 137 SLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
              + ++   ++ + L      +D+ L   + GC NL  + +  C   +E  
Sbjct: 455 LSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGC-CFSERA 504

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 63.8 bits (155), Expect = 2e-12
 Identities = 22/115 (19%), Positives = 48/115 (41%), Gaps = 15/115 (13%)

Query: 84  LENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH 143
           +  +       +R++ L      T++   ++ + C N+E   L     + D     L+++
Sbjct: 285 MPILFPFAAQ-IRKLDLLYALLETEDHCTLIQK-CPNLE--VLETRNVIGDRGLEVLAQY 340

Query: 144 CAKLQRLDLASC----------SFITDQSLKALADGCRNLTHINISWCINITENG 188
           C +L+RL +               ++ + L ALA GC+ L ++ +    +IT   
Sbjct: 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNES 394

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 62.3 bits (151), Expect = 6e-12
 Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 84  LENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDI---NLNLCKKLTDATS--- 137
           L  +++ C   L  +++     +T+ SL  +  Y  N+ D     L+  +++TD      
Sbjct: 370 LIALAQGCQE-LEYMAVYVSD-ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427

Query: 138 -LALSKHCAKLQRLDLAS-CSFITDQSLKALADGCRNLTHINISWCINITENG 188
             +L   C KL+R         +TD  L  +     N+  + + +    ++ G
Sbjct: 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEG 479

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 10/91 (10%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 84  LENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCK-KLTDATSLALSK 142
           L   SR C   L+++ +RGC   ++ ++        ++  + +   +  +T    + +++
Sbjct: 480 LMEFSRGCPN-LQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMAR 537

Query: 143 HCAKLQRLDLASCSFITDQSLKALADGCRNL 173
               ++ +       +  Q      +   ++
Sbjct: 538 PYWNIELIPSRRVPEVNQQGEIREMEHPAHI 568

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 19/120 (15%), Positives = 33/120 (27%), Gaps = 23/120 (19%)

Query: 84  LENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNL--------------- 128
           LE I+R C   L  + +   + +        A         +LN                
Sbjct: 212 LETIARNCRS-LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270

Query: 129 ------CKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCI 182
                    +       L    A++++LDL      T+     +   C NL  +     I
Sbjct: 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ-KCPNLEVLETRNVI 329

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 85.5 bits (211), Expect = 2e-20
 Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 12/116 (10%)

Query: 29  KLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQ------------ 76
           +LP ++ L I S+L    LC+    +  WN    D   W    L +              
Sbjct: 7   RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPD 66

Query: 77  TDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKL 132
            ++    +  ++         +    C  +   +    A +   +E++N +L   L
Sbjct: 67  LEILKKPISEVTDGAFFDYMAVYRMCCPYLIIQNEPRFAMFGPGLEELNTSLVLSL 122

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 67.6 bits (166), Expect = 5e-16
 Identities = 20/43 (46%), Positives = 24/43 (55%)

Query: 29 KLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRID 71
           LP ELLL IFS L +  L + + V K W  LA D S W  +D
Sbjct: 11 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 61.0 bits (148), Expect = 3e-12
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 95  LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHC---AKLQRLD 151
           ++ I       M+    ++       VE I L  C  + D     LS+       +  ++
Sbjct: 63  IQAIDATDSCIMSIGFDHMEG--LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEME 120

Query: 152 LASCSFITDQSLKALADGCRNLTHINISWCINITENG 188
           + SC  +TD+ + AL    RNL ++ +S    + E  
Sbjct: 121 IISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEKE 156

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 58.3 bits (141), Expect = 4e-11
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 95  LRQISLRGCQSMTDNSLNILAQYCN---NVEDINLNLCKKLTDATSLALSKHCAKLQRLD 151
           + +I L  C  + D  L  L+Q  N   ++ ++ +  C  +TD   +AL  H   L+ L 
Sbjct: 87  VEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLF 145

Query: 152 LASCSFITDQSLKALADGCRNLTHINIS 179
           L+    + ++     A    +L  + + 
Sbjct: 146 LSDLPGVKEKEKIVQA-FKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 57.5 bits (139), Expect = 5e-11
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 6/102 (5%)

Query: 90  RCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQR 149
           RCG  +R    +  Q    N L         ++ I+      +         +    +++
Sbjct: 33  RCGAMVRYHGQQRWQK-DYNHLPTGPLDKYKIQAIDATDSC-IMSI-GFDHMEGLQYVEK 89

Query: 150 LDLASCSFITDQSLKALADGC---RNLTHINISWCINITENG 188
           + L  C +I D  L+ L+      +++  + I  C N+T+ G
Sbjct: 90  IRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 56.1 bits (136), Expect = 7e-10
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 28 KKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNW 67
            LPKEL L + S+L+   L + AQ  + W ILA D   W
Sbjct: 20 SLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLW 59

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 54.2 bits (129), Expect = 3e-09
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 30 LPKELLLRIFSYLDVTSLCR-CAQVSKAWNILALDGSNWSRI 70
          LP+ LLLR+ + L  T L + C  V   W  L      W   
Sbjct: 54 LPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK 95

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 53.0 bits (128), Expect = 8e-09
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 30 LPKELLLRIFSYLDVTSLCRCAQVSKAWN-ILALDGSNWSRI 70
          LP E+ L+IF+YL    +     VS+ WN I+    S W ++
Sbjct: 18 LPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL 59

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 53.1 bits (128), Expect = 8e-09
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 30  LPKELL----LRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLE 85
           LP   L      I SYLD  SLC    V K W  +  DG  W ++     +TD    +  
Sbjct: 14  LPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTD---SLWR 70

Query: 86  NISRRCGGFLRQISLRGCQSMTDNSLNILAQY 117
            ++ R G        +        +    A Y
Sbjct: 71  GLAERRGWGQYLFKNKPPDGNAPPNSFYRALY 102

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.1 bits (95), Expect = 9e-05
 Identities = 13/91 (14%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 95  LRQISLRGCQSMTDNSLNIL-AQYCNNVEDINLNLCKKLTDATSLALSKHC---AKLQRL 150
           L+ + +   +         L +     +E ++++    LTD  +  L  H      L+ +
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFI 312

Query: 151 DLASCSFITDQSLKALADGCRNLTHINISWC 181
           ++    +++D+  K L         ++ S  
Sbjct: 313 NMKYN-YLSDEMKKELQKSLPMKIDVSDSQE 342

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 13/99 (13%), Positives = 34/99 (34%), Gaps = 6/99 (6%)

Query: 94  FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD-ATSLALSKHCAKLQRLDL 152
           ++          M             N++ + +   ++          S    +L+ +D+
Sbjct: 227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286

Query: 153 ASCSFITDQSLKALADGCRNLTH---INISWCINITENG 188
            S   +TD+  + L D    + H   IN+ +   +++  
Sbjct: 287 -SAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEM 323

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 11/101 (10%)

Query: 95  LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD--ATSLA--LSKHCAKLQRL 150
           L +++L  CQ +    L  L         + L L   L       L   L     ++  L
Sbjct: 103 LDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTL 160

Query: 151 DLASCSFITDQSLKALADG---CRNLTHINISWCINITENG 188
            L++   +T   +  L +G     ++TH+++     + + G
Sbjct: 161 RLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEG 199

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	189
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.75
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.73
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.55
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.38
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.35
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.27
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.15
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.1
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.99
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.95
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.82
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.8
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.78
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.66
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.61
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.58
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.58
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.56
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.48
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.47
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.38
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.28
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.18
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.14
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.02
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.0
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.94
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.82
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.73
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.72
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.71
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.6
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.51
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.48
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.37
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	97.08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.0
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.0
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	96.99
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	96.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	96.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	96.94
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	96.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	96.91
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	96.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	96.9
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.9
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	96.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	96.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	96.85
1o6v_A	466	Internalin A; bacterial infection, extracellular r	96.84
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.78
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	96.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	96.78
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.76
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	96.76
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	96.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.71
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	96.7
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	96.69
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	96.65
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	96.65
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	96.65
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	96.64
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	96.64
3m19_A	251	Variable lymphocyte receptor A diversity region; a	96.62
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	96.61
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	96.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.61
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	96.61
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	96.59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	96.58
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.57
3e6j_A	229	Variable lymphocyte receptor diversity region; var	96.56
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	96.55
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	96.54
3m19_A	251	Variable lymphocyte receptor A diversity region; a	96.53
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	96.51
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.51
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	96.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	96.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.44
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	96.44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	96.42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	96.41
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.41
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	96.4
3e6j_A	229	Variable lymphocyte receptor diversity region; var	96.4
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	96.34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	96.34
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.33
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.32
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	96.31
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	96.31
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.3
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	96.27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	96.26
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	96.26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	96.25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	96.24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	96.24
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.23
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	96.22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	96.2
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	96.16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	96.14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	96.14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	96.08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	96.05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	96.04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	96.03
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	95.96
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	95.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	95.94
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	95.93
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	95.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	95.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	95.88
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	95.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	95.85
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	95.85
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	95.84
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	95.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	95.58
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	95.54
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	95.39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	95.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	94.86
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	94.79
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	94.72
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	94.61
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	94.47
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	94.26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	94.14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	93.37
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	92.22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	91.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	91.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	91.41
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	90.92
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	90.36
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	89.5

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=4.9e-22  Score=153.90  Aligned_cols=156  Identities=30%  Similarity=0.472  Sum_probs=99.8

Q ss_pred             hhhcCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceeeccCCCC--------------------------
Q psy9585          24 ALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQT--------------------------   77 (189)
Q Consensus        24 ~~~~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~l~~~~~--------------------------   77 (189)
                      ...|++||+|++.+||+||+..|+.+++.||++|++++.++..|+.++++....                          
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~   85 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQP   85 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSC
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEcCCcccccc
Confidence            456999999999999999999999999999999999998888899988764310                          


Q ss_pred             ------------------CCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHH
Q psy9585          78 ------------------DVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLA  139 (189)
Q Consensus        78 ------------------~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~  139 (189)
                                        .+++..+..+...+++ |++|+++++ .+++.....+. .+++|++|++++|..+++.++..
T Consensus        86 ~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~-L~~L~L~~~-~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~  162 (336)
T 2ast_B           86 LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK-LQNLSLEGL-RLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQT  162 (336)
T ss_dssp             CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC-CSEEECTTC-BCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHH
T ss_pred             chhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC-CCEEeCcCc-ccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHH
Confidence                              1122334444445543 666666654 34444444333 35566666666554555555555


Q ss_pred             HHHcCCCCCEEecCCCCCCCHHHHHHHHhcCC-CCCeeecccCc
Q psy9585         140 LSKHCAKLQRLDLASCSFITDQSLKALADGCR-NLTHINISWCI  182 (189)
Q Consensus       140 l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~-~L~~L~l~~c~  182 (189)
                      +...+++|++|+|++|..+++.++..+...+| +|++|++++|.
T Consensus       163 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            55555566666666553455555444444455 55555555553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.83  E-value=9.4e-21  Score=156.69  Aligned_cols=154  Identities=21%  Similarity=0.312  Sum_probs=103.7

Q ss_pred             hhhcCCCCHHHHHHHHhcCC-hhhhHHHhhhhHHHHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecC
Q psy9585          24 ALINKKLPKELLLRIFSYLD-VTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRG  102 (189)
Q Consensus        24 ~~~~~~LP~~il~~I~~~L~-~~~~~~~~~v~~~w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~  102 (189)
                      .+.|++||+|+|.+||+||+ .+|+.+++.|||+|+++..  ..|..+++..+.... .   ..+..+++. |++|.+.+
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~--~~~~~l~~~~~~~~~-~---~~~~~~~~~-L~~L~L~~   75 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIER--WCRRKVFIGNCYAVS-P---ATVIRRFPK-VRSVELKG   75 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHH--HHCCEEEESSTTSSC-H---HHHHHHCTT-CCEEEEEC
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhh--hhceEEeeccccccC-H---HHHHhhCCC-ceEEeccC
Confidence            46799999999999999999 8999999999999999832  446667665543222 1   234455564 77777777


Q ss_pred             CCCCC-------------HHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhc
Q psy9585         103 CQSMT-------------DNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADG  169 (189)
Q Consensus       103 ~~~~~-------------~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~  169 (189)
                      +..+.             ...+..+...+++|++|+|++| .+++..+..+...+++|++|+|.+|..+++.++..+..+
T Consensus        76 ~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~  154 (594)
T 2p1m_B           76 KPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT  154 (594)
T ss_dssp             SCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHH
T ss_pred             CCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHh
Confidence            54322             2234555667777777777775 477777777766677777777777766777777777767


Q ss_pred             CCCCCeeecccCcCcCC
Q psy9585         170 CRNLTHINISWCINITE  186 (189)
Q Consensus       170 ~~~L~~L~l~~c~~lt~  186 (189)
                      ||+|++|++++|. +++
T Consensus       155 ~~~L~~L~L~~~~-i~~  170 (594)
T 2p1m_B          155 CRNLKELDLRESD-VDD  170 (594)
T ss_dssp             CTTCCEEECTTCE-EEC
T ss_pred             CCCCCEEeCcCCc-cCC
Confidence            7777777777774 544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.75  E-value=2.3e-18  Score=142.40  Aligned_cols=146  Identities=17%  Similarity=0.291  Sum_probs=76.2

Q ss_pred             CCCCHHHHHHHHhcC-ChhhhHHHhhhhHHHHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCC-
Q psy9585          28 KKLPKELLLRIFSYL-DVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQS-  105 (189)
Q Consensus        28 ~~LP~~il~~I~~~L-~~~~~~~~~~v~~~w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~-  105 (189)
                      .+||+|+|.+||+|| +.+|+.+++.|||+|+++..  ..++.+.+......    ....+..++++ |++|+++++.. 
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~--~~~~~l~~~~~~~~----~~~~~~~~~~~-L~~L~L~~~~~~   86 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDS--ETREHVTMALCYTA----TPDRLSRRFPN-LRSLKLKGKPRA   86 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHH--HHCCEEEESCGGGS----CHHHHHHHCTT-CSEEEEECSCGG
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhh--ccccEEEEeecccc----ChHHHHHhCCC-CeEEEecCCcch
Confidence            479999999999999 88999999999999998742  11223332211111    11223333443 55555443221 


Q ss_pred             ------------CCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCC-CCEEecCCCCCCCHHHHHHHHhcCCC
Q psy9585         106 ------------MTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAK-LQRLDLASCSFITDQSLKALADGCRN  172 (189)
Q Consensus       106 ------------~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~-L~~L~L~~c~~i~~~~l~~l~~~~~~  172 (189)
                                  .....+..+...+++|++|+|++| .+++..+..+...++. |++|+|++|..+++.++..+..+||+
T Consensus        87 ~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~  165 (592)
T 3ogk_B           87 AMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRK  165 (592)
T ss_dssp             GGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTT
T ss_pred             hhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCC
Confidence                        112233334444444555554443 3444444444433333 44444444444444444444444444


Q ss_pred             CCeeecccC
Q psy9585         173 LTHINISWC  181 (189)
Q Consensus       173 L~~L~l~~c  181 (189)
                      |++|++++|
T Consensus       166 L~~L~L~~~  174 (592)
T 3ogk_B          166 IKTLLMEES  174 (592)
T ss_dssp             CSEEECTTC
T ss_pred             CCEEECccc
Confidence            444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.73  E-value=1.9e-18  Score=121.59  Aligned_cols=92  Identities=22%  Similarity=0.286  Sum_probs=84.5

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHc---CCCCCEEecCCCCCCCHHHHHHHHhcC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH---CAKLQRLDLASCSFITDQSLKALADGC  170 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~---~~~L~~L~L~~c~~i~~~~l~~l~~~~  170 (189)
                      +|++|++++|. +++.++..+. .|++|+.|+|++|..++|.++..+...   +++|++|+|++|..|||.++..|.. |
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~  138 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-F  138 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-C
T ss_pred             eEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-C
Confidence            49999999985 9999998874 899999999999999999999999872   5789999999999999999999875 9


Q ss_pred             CCCCeeecccCcCcCCCC
Q psy9585         171 RNLTHINISWCINITENG  188 (189)
Q Consensus       171 ~~L~~L~l~~c~~lt~~~  188 (189)
                      |+|++|+|++|+.||+.|
T Consensus       139 ~~L~~L~L~~c~~Itd~g  156 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKEKE  156 (176)
T ss_dssp             TTCCEEEEESCTTCCCHH
T ss_pred             CCCCEEECCCCCCCCchH
Confidence            999999999999999864

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.55  E-value=7.9e-15  Score=103.12  Aligned_cols=104  Identities=18%  Similarity=0.265  Sum_probs=89.7

Q ss_pred             CcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHc---CCCcceEecccCCCCCHHHHHHHHH
Q psy9585          66 NWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQY---CNNVEDINLNLCKKLTDATSLALSK  142 (189)
Q Consensus        66 ~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~i~~~~~~~l~~  142 (189)
                      .+..+|++++  .+++..+..+ ..++. |++|+|++|..++|.++..+...   |++|++|+|++|.++||.++..+..
T Consensus        62 ~L~~LDLs~~--~Itd~GL~~L-~~~~~-L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~  137 (176)
T 3e4g_A           62 KIQAIDATDS--CIMSIGFDHM-EGLQY-VEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH  137 (176)
T ss_dssp             CEEEEEEESC--CCCGGGGGGG-TTCSC-CCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred             eEeEEeCcCC--CccHHHHHHh-cCCCC-CCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence            4677888866  4888888887 46775 99999999999999999999853   6799999999999999999999875


Q ss_pred             cCCCCCEEecCCCCCCCHHH--HHHHHhcCCCCC
Q psy9585         143 HCAKLQRLDLASCSFITDQS--LKALADGCRNLT  174 (189)
Q Consensus       143 ~~~~L~~L~L~~c~~i~~~~--l~~l~~~~~~L~  174 (189)
                       +++|++|+|++|..|||.+  ...+-...|+++
T Consensus       138 -~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          138 -FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             -CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             -CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence             8999999999999999976  556667788876

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.38  E-value=3.3e-13  Score=76.39  Aligned_cols=49  Identities=41%  Similarity=0.614  Sum_probs=40.1

Q ss_pred             hhhhcCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceee
Q psy9585          23 EALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRID   71 (189)
Q Consensus        23 ~~~~~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~   71 (189)
                      ....|..||+|++.+||+||+..|+.+++.|||+|+.++.++.+|+.+|
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~ld   53 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD   53 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC----
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhcC
Confidence            3456899999999999999999999999999999999999989998875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.35  E-value=1.1e-11  Score=95.63  Aligned_cols=118  Identities=20%  Similarity=0.483  Sum_probs=62.6

Q ss_pred             CCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcC
Q psy9585          65 SNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHC  144 (189)
Q Consensus        65 ~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~  144 (189)
                      ..++.+++.+.  .+++.....+.. ++ +|++|+++++..+++..+..+...+++|++|++++|..+++.++..+...+
T Consensus       118 ~~L~~L~L~~~--~l~~~~~~~l~~-~~-~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  193 (336)
T 2ast_B          118 SKLQNLSLEGL--RLSDPIVNTLAK-NS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  193 (336)
T ss_dssp             CCCSEEECTTC--BCCHHHHHHHTT-CT-TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             CCCCEEeCcCc--ccCHHHHHHHhc-CC-CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence            44555555433  344444444333 33 266666665545555555555555666666666655455555555555555


Q ss_pred             C-CCCEEecCCCC-CCCHHHHHHHHhcCCCCCeeecccCcCcCC
Q psy9585         145 A-KLQRLDLASCS-FITDQSLKALADGCRNLTHINISWCINITE  186 (189)
Q Consensus       145 ~-~L~~L~L~~c~-~i~~~~l~~l~~~~~~L~~L~l~~c~~lt~  186 (189)
                      + +|++|+|++|. .+++..+..+...+|+|++|++++|..+++
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  237 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN  237 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH
Confidence            5 66666666554 455555555555556666666665543443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.27  E-value=1.2e-10  Score=96.27  Aligned_cols=103  Identities=21%  Similarity=0.350  Sum_probs=83.1

Q ss_pred             HHHHHHHHHcCCCccEEeecCCC-CCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCH
Q psy9585          82 PVLENISRRCGGFLRQISLRGCQ-SMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITD  160 (189)
Q Consensus        82 ~~l~~l~~~~~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~  160 (189)
                      ..+..+...+++ |++|++++|. .+++..+..+...+++|+.|++++| .+++.++..+...+++|++|+|++|. +++
T Consensus       426 ~~~~~~~~~~~~-L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~  502 (592)
T 3ogk_B          426 NGVRSLLIGCKK-LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSE  502 (592)
T ss_dssp             HHHHHHHHHCTT-CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBH
T ss_pred             HHHHHHHHhCCC-CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcH
Confidence            356666666665 8888876543 3778888888878889999999885 58888888888888999999999977 898


Q ss_pred             HHHHHHHhcCCCCCeeecccCcCcCCCC
Q psy9585         161 QSLKALADGCRNLTHINISWCINITENG  188 (189)
Q Consensus       161 ~~l~~l~~~~~~L~~L~l~~c~~lt~~~  188 (189)
                      .++..++..+|+|++|++++|. +|+.|
T Consensus       503 ~~~~~~~~~l~~L~~L~ls~n~-it~~~  529 (592)
T 3ogk_B          503 RAIAAAVTKLPSLRYLWVQGYR-ASMTG  529 (592)
T ss_dssp             HHHHHHHHHCSSCCEEEEESCB-CCTTC
T ss_pred             HHHHHHHHhcCccCeeECcCCc-CCHHH
Confidence            8888888889999999999995 88775

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.15  E-value=8.1e-10  Score=91.17  Aligned_cols=103  Identities=19%  Similarity=0.334  Sum_probs=65.4

Q ss_pred             CCHHHHHHHHHHcCCCccEEeec-----CCCCCC----HHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCE
Q psy9585          79 VEGPVLENISRRCGGFLRQISLR-----GCQSMT----DNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQR  149 (189)
Q Consensus        79 ~~~~~l~~l~~~~~~~L~~L~l~-----~~~~~~----~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~  149 (189)
                      +++..+..++..+++ |+.|++.     +|..++    +.++..+...|++|+.|++++  .+++.++..+...+++|++
T Consensus       384 l~~~~~~~l~~~~~~-L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~  460 (594)
T 2p1m_B          384 MTNAALITIARNRPN-MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEM  460 (594)
T ss_dssp             CCHHHHHHHHHHCTT-CCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCE
T ss_pred             cCHHHHHHHHhhCCC-cceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccE
Confidence            344444444444543 6666665     344555    555655566666666666654  5666666666666777777


Q ss_pred             EecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcCC
Q psy9585         150 LDLASCSFITDQSLKALADGCRNLTHINISWCINITE  186 (189)
Q Consensus       150 L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt~  186 (189)
                      |+|++|. +++.++..++.+||+|++|++++|. +++
T Consensus       461 L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~-~~~  495 (594)
T 2p1m_B          461 LSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCP-FGD  495 (594)
T ss_dssp             EEEESCC-SSHHHHHHHHHHCTTCCEEEEESCS-CCH
T ss_pred             eeccCCC-CcHHHHHHHHhcCCCcCEEECcCCC-CcH
Confidence            7777754 7777777776778888888888874 343

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.10  E-value=7.5e-10  Score=86.98  Aligned_cols=85  Identities=15%  Similarity=0.122  Sum_probs=38.3

Q ss_pred             CCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHH----cCCCcceEecccCCCCCHHHHHHH
Q psy9585          65 SNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQ----YCNNVEDINLNLCKKLTDATSLAL  140 (189)
Q Consensus        65 ~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~~i~~~~~~~l  140 (189)
                      ..++.++++..  .+++..+..++..... |++|+++++ .+++.+...+..    .+++|++|+|++| .+++.++..+
T Consensus       101 ~~L~~L~Ls~n--~l~~~~~~~l~~~L~~-L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l  175 (372)
T 3un9_A          101 HALDEVNLASC--QLDPAGLRTLLPVFLR-ARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVL  175 (372)
T ss_dssp             SCEEEEECTTC--CCCHHHHHHTHHHHHT-EEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHH
T ss_pred             CCceEEEecCC--CCCHHHHHHHHHHHHh-ccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHH
Confidence            45667777643  4555555554444332 555555553 344444333321    2334444444443 3444333333


Q ss_pred             H---HcCCCCCEEecCC
Q psy9585         141 S---KHCAKLQRLDLAS  154 (189)
Q Consensus       141 ~---~~~~~L~~L~L~~  154 (189)
                      .   ..+++|++|+|++
T Consensus       176 ~~~L~~~~~L~~L~Ls~  192 (372)
T 3un9_A          176 MEGLAGNTSVTHLSLLH  192 (372)
T ss_dssp             HHHHHTCSSCCEEECTT
T ss_pred             HHHHhcCCCcCEEeCCC
Confidence            2   1234444444444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.99  E-value=2.6e-08  Score=70.61  Aligned_cols=127  Identities=15%  Similarity=0.226  Sum_probs=94.0

Q ss_pred             HHHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHHc--CCCccEEeecCCCCCCHHHHHHHH---HcCCCcceEecccCC
Q psy9585          56 AWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRC--GGFLRQISLRGCQSMTDNSLNILA---QYCNNVEDINLNLCK  130 (189)
Q Consensus        56 ~w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~--~~~L~~L~l~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~  130 (189)
                      ....+......++.++++.. ..+.+..+..++...  ..+|++|+++++ .+++.+...++   ...++|++|+|+++ 
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n-~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-  103 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNI-MNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-  103 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTC-TTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-
T ss_pred             HHHHHHhcCCCCCEEEecCC-CCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-
Confidence            34444455567788888633 167777777776632  235999999996 68888766554   45689999999995 


Q ss_pred             CCCHHHHHHHHH---cCCCCCEEec--CCCCCCCHHHHHHHHh---cCCCCCeeecccCcCcCCC
Q psy9585         131 KLTDATSLALSK---HCAKLQRLDL--ASCSFITDQSLKALAD---GCRNLTHINISWCINITEN  187 (189)
Q Consensus       131 ~i~~~~~~~l~~---~~~~L~~L~L--~~c~~i~~~~l~~l~~---~~~~L~~L~l~~c~~lt~~  187 (189)
                      .+++++...++.   ..+.|++|+|  ++ ..+++++...|+.   .+++|++|++++| .++++
T Consensus       104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~  166 (185)
T 1io0_A          104 FISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPR  166 (185)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChH
Confidence            799999888875   4578999999  66 5699998666543   4689999999998 56544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.95  E-value=1e-08  Score=72.73  Aligned_cols=104  Identities=19%  Similarity=0.269  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHH---cCCCcceEecccCCCCCHHHHHHHHH---cCCCCCEEecCC
Q psy9585          81 GPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQ---YCNNVEDINLNLCKKLTDATSLALSK---HCAKLQRLDLAS  154 (189)
Q Consensus        81 ~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~L~~  154 (189)
                      ...+..+...++. |++|+++++..+++.++..+..   .+++|++|+|+++ .+++++...++.   ..++|++|+|++
T Consensus        25 ~~~l~~~l~~~~~-L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~  102 (185)
T 1io0_A           25 EETLKRIQNNDPD-LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES  102 (185)
T ss_dssp             HHHHHHHHTTCTT-CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred             HHHHHHHHhcCCC-CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC
Confidence            3455566666665 9999999965889988776654   5689999999995 799988877765   468999999999


Q ss_pred             CCCCCHHHHHHHHhc---CCCCCeeec--ccCcCcCCCC
Q psy9585         155 CSFITDQSLKALADG---CRNLTHINI--SWCINITENG  188 (189)
Q Consensus       155 c~~i~~~~l~~l~~~---~~~L~~L~l--~~c~~lt~~~  188 (189)
                       ..|++.+...|+..   +++|++|++  +++ .++++|
T Consensus       103 -N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g  139 (185)
T 1io0_A          103 -NFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNV  139 (185)
T ss_dssp             -SCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHH
T ss_pred             -CcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHH
Confidence             45999998887654   578999999  666 677654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.91  E-value=6.6e-09  Score=81.60  Aligned_cols=117  Identities=15%  Similarity=0.253  Sum_probs=92.8

Q ss_pred             CCcceeeccCCCCCCCHHHHHHHHHH---cCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHH
Q psy9585          65 SNWSRIDLFNFQTDVEGPVLENISRR---CGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS  141 (189)
Q Consensus        65 ~~~~~~~l~~~~~~~~~~~l~~l~~~---~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~  141 (189)
                      ..++.++++..  .+++.....++..   ...+|++|+++++ .+++.++..+...+++|++|+|++| .+++.++..+.
T Consensus        72 ~~L~~L~Ls~n--~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~  147 (372)
T 3un9_A           72 SSLRQLNLAGV--RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR  147 (372)
T ss_dssp             TTCCEEECTTS--CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred             hhCCEEEecCC--CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH
Confidence            45678888755  6777666666654   3246999999996 6899999888888889999999996 79998888876


Q ss_pred             H----cCCCCCEEecCCCCCCCHHHHHHHH---hcCCCCCeeecccCcCcCCC
Q psy9585         142 K----HCAKLQRLDLASCSFITDQSLKALA---DGCRNLTHINISWCINITEN  187 (189)
Q Consensus       142 ~----~~~~L~~L~L~~c~~i~~~~l~~l~---~~~~~L~~L~l~~c~~lt~~  187 (189)
                      .    .+++|++|+|++|. +++.+...++   ..+++|++|++++| .+++.
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~  198 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDE  198 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHH
T ss_pred             HHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcH
Confidence            4    36899999999964 9988877764   45789999999998 57654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.82  E-value=7.2e-08  Score=75.69  Aligned_cols=12  Identities=8%  Similarity=0.130  Sum_probs=5.7

Q ss_pred             CCCCCeeecccC
Q psy9585         170 CRNLTHINISWC  181 (189)
Q Consensus       170 ~~~L~~L~l~~c  181 (189)
                      +|+|++|++++|
T Consensus       302 l~~L~~L~l~~N  313 (386)
T 2ca6_A          302 MPDLLFLELNGN  313 (386)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCCceEEEccCC
Confidence            344444444444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.80  E-value=3.1e-08  Score=79.25  Aligned_cols=124  Identities=20%  Similarity=0.323  Sum_probs=86.3

Q ss_pred             HHHhhhCCCCcceeeccCCCCCCCHHHHHHH---HHHcCCCccEEeecCCCCCCHHHHHHHHHcCC----CcceEecccC
Q psy9585          57 WNILALDGSNWSRIDLFNFQTDVEGPVLENI---SRRCGGFLRQISLRGCQSMTDNSLNILAQYCN----NVEDINLNLC  129 (189)
Q Consensus        57 w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l---~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~----~L~~L~l~~~  129 (189)
                      |..++..-..++.++++..  .+++..+..+   ...++. |++|+++++ .+++..+..+...++    +|++|++++|
T Consensus        20 ~~~~~~~~~~L~~L~L~~~--~l~~~~~~~l~~~l~~~~~-L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n   95 (461)
T 1z7x_W           20 WAELLPLLQQCQVVRLDDC--GLTEARCKDISSALRVNPA-LAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC   95 (461)
T ss_dssp             HHHHHHHHTTCSEEEEESS--CCCHHHHHHHHHHHHTCTT-CCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTS
T ss_pred             HHHHHhhcCCccEEEccCC--CCCHHHHHHHHHHHHhCCC-cCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCC
Confidence            4443333356778888755  5666544444   334454 999999985 577877877777776    6999999986


Q ss_pred             CCCCHHHH---HHHHHcCCCCCEEecCCCCCCCHHHHHHHHhc----CCCCCeeecccCcCcCCC
Q psy9585         130 KKLTDATS---LALSKHCAKLQRLDLASCSFITDQSLKALADG----CRNLTHINISWCINITEN  187 (189)
Q Consensus       130 ~~i~~~~~---~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~----~~~L~~L~l~~c~~lt~~  187 (189)
                       .+++.++   ......+++|++|+|+++. +++.++..+...    .++|++|++++| .+++.
T Consensus        96 -~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~  157 (461)
T 1z7x_W           96 -CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAA  157 (461)
T ss_dssp             -CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGG
T ss_pred             -CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHH
Confidence             5776443   3334568899999999855 888887777654    457999999998 56654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.78  E-value=2.7e-07  Score=72.38  Aligned_cols=115  Identities=17%  Similarity=0.251  Sum_probs=86.1

Q ss_pred             CCcceeeccCCCCCCCHHHHHH---HHHHcCCCccEEeecCCCCCCHHHHHHHHH----cCCCcceEecccCCCCCHHHH
Q psy9585          65 SNWSRIDLFNFQTDVEGPVLEN---ISRRCGGFLRQISLRGCQSMTDNSLNILAQ----YCNNVEDINLNLCKKLTDATS  137 (189)
Q Consensus        65 ~~~~~~~l~~~~~~~~~~~l~~---l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~~i~~~~~  137 (189)
                      ..++.++++..  .+.+..+..   ....++. |++|.++++ .+++.++..+..    .+++|+.|+|+++ .+++.+.
T Consensus       159 ~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~-L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~  233 (386)
T 2ca6_A          159 PPLRSIICGRN--RLENGSMKEWAKTFQSHRL-LHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGS  233 (386)
T ss_dssp             CCCCEEECCSS--CCTGGGHHHHHHHHHHCTT-CCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHH
T ss_pred             CCCcEEECCCC--CCCcHHHHHHHHHHHhCCC-cCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHH
Confidence            46788888754  555444554   3346664 999999996 788877655544    7899999999995 6876555


Q ss_pred             HHHH---HcCCCCCEEecCCCCCCCHHHHHHHHhc-----CCCCCeeecccCcCcCC
Q psy9585         138 LALS---KHCAKLQRLDLASCSFITDQSLKALADG-----CRNLTHINISWCINITE  186 (189)
Q Consensus       138 ~~l~---~~~~~L~~L~L~~c~~i~~~~l~~l~~~-----~~~L~~L~l~~c~~lt~  186 (189)
                      ..+.   ..+++|++|+|++|. +++.+...+...     +++|++|++++| .+++
T Consensus       234 ~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~  288 (386)
T 2ca6_A          234 SALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIEL  288 (386)
T ss_dssp             HHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBH
T ss_pred             HHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCC-cCCH
Confidence            4443   568999999999965 998877666543     799999999999 5664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.66  E-value=2.3e-07  Score=74.22  Aligned_cols=152  Identities=16%  Similarity=0.236  Sum_probs=102.3

Q ss_pred             CCCHHHHHHHHhcC---ChhhhHHHhhhhH---HHHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHHcCC---CccEEe
Q psy9585          29 KLPKELLLRIFSYL---DVTSLCRCAQVSK---AWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGG---FLRQIS   99 (189)
Q Consensus        29 ~LP~~il~~I~~~L---~~~~~~~~~~v~~---~w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~---~L~~L~   99 (189)
                      .+.++.+..++..+   ...++..+.....   .+.........++.+++++.  .+.+..+..+......   +|++|+
T Consensus        14 ~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~~L~~L~   91 (461)
T 1z7x_W           14 ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN--ELGDVGVHCVLQGLQTPSCKIQKLS   91 (461)
T ss_dssp             CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC--CCHHHHHHHHHHTTCSTTCCCCEEE
T ss_pred             ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC--cCChHHHHHHHHHHhhCCCceeEEE
Confidence            35555666655543   3333333332222   22233333466889999754  6777777777776552   499999


Q ss_pred             ecCCCCCCHHH---HHHHHHcCCCcceEecccCCCCCHHHHHHHHHc----CCCCCEEecCCCCCCCHHHHHH---HHhc
Q psy9585         100 LRGCQSMTDNS---LNILAQYCNNVEDINLNLCKKLTDATSLALSKH----CAKLQRLDLASCSFITDQSLKA---LADG  169 (189)
Q Consensus       100 l~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~----~~~L~~L~L~~c~~i~~~~l~~---l~~~  169 (189)
                      ++++ .+++.+   +......+++|++|+++++ .+++.++..+...    .++|++|+|++|. +++.+...   ....
T Consensus        92 L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~  168 (461)
T 1z7x_W           92 LQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRA  168 (461)
T ss_dssp             CTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHH
T ss_pred             ccCC-CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhh
Confidence            9997 577643   4444567899999999996 5888888777653    4679999999964 77755433   3445


Q ss_pred             CCCCCeeecccCcCcCC
Q psy9585         170 CRNLTHINISWCINITE  186 (189)
Q Consensus       170 ~~~L~~L~l~~c~~lt~  186 (189)
                      +++|++|++++|. +++
T Consensus       169 ~~~L~~L~L~~n~-i~~  184 (461)
T 1z7x_W          169 KPDFKELTVSNND-INE  184 (461)
T ss_dssp             CTTCCEEECCSSB-CHH
T ss_pred             CCCCCEEECcCCC-cch
Confidence            8999999999984 654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.61  E-value=5.4e-09  Score=78.47  Aligned_cols=47  Identities=28%  Similarity=0.489  Sum_probs=42.7

Q ss_pred             hcCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceeec
Q psy9585          26 INKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDL   72 (189)
Q Consensus        26 ~~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~l   72 (189)
                      .++.||+|++.+||+||+++|+.+++.||++|+.++.++.+|+.+-.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~   50 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLL   50 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHh
Confidence            47899999999999999999999999999999999999888877643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.58  E-value=3.6e-07  Score=65.18  Aligned_cols=126  Identities=14%  Similarity=0.209  Sum_probs=86.3

Q ss_pred             hhHHHHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHHc--CCCccEEeecCCCCCCHHHHHHH---HHcCCCcceEecc
Q psy9585          53 VSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRC--GGFLRQISLRGCQSMTDNSLNIL---AQYCNNVEDINLN  127 (189)
Q Consensus        53 v~~~w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~--~~~L~~L~l~~~~~~~~~~l~~l---~~~~~~L~~L~l~  127 (189)
                      +-.....+......++.+++... ..+.+..+..++...  ...|++|+|+++ .++|.+.+.+   ....+.|+.|+|+
T Consensus        29 v~~~l~~ll~~n~~L~~L~L~~n-n~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~  106 (197)
T 1pgv_A           29 VESCINRLREDDTDLKEVNINNM-KRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVE  106 (197)
T ss_dssp             HHHHHHHHHTTCSSCCEEECTTC-CSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHHHHhcCCCccEEECCCC-CCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecC
Confidence            33444555555566788887632 266777666665532  224999999885 6888775444   3466789999998


Q ss_pred             cCCCCCHHHHHHHHHcC---CCCCEEecCCCC--CCCHHHHHHH---HhcCCCCCeeecccC
Q psy9585         128 LCKKLTDATSLALSKHC---AKLQRLDLASCS--FITDQSLKAL---ADGCRNLTHINISWC  181 (189)
Q Consensus       128 ~~~~i~~~~~~~l~~~~---~~L~~L~L~~c~--~i~~~~l~~l---~~~~~~L~~L~l~~c  181 (189)
                      + ..|++++...++..+   +.|++|+|+++.  .+++.+-..|   ....+.|++|++..+
T Consensus       107 ~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          107 S-NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             S-SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             C-CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            8 579999988888744   679999998642  5788764444   344678999988765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.58  E-value=3.7e-07  Score=71.11  Aligned_cols=18  Identities=11%  Similarity=0.058  Sum_probs=10.7

Q ss_pred             hcCCCCHHHHHHHHhcCC
Q psy9585          26 INKKLPKELLLRIFSYLD   43 (189)
Q Consensus        26 ~~~~LP~~il~~I~~~L~   43 (189)
                      .+.+.+...+...|..++
T Consensus        33 ~l~~~~~~~l~~~l~~~~   50 (362)
T 3goz_A           33 NLYSISTVELIQAFANTP   50 (362)
T ss_dssp             CGGGSCHHHHHHHHHTCC
T ss_pred             CCChHHHHHHHHHHHhCC
Confidence            356666666666666443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.56  E-value=7.7e-08  Score=75.24  Aligned_cols=108  Identities=17%  Similarity=0.194  Sum_probs=74.4

Q ss_pred             CCCHHHHHHHHHHcCCCccEEeecCCCC--CCH---HHHHHHH--HcCCCcceEecccCCCCCHHHHHHHHH--cCCCCC
Q psy9585          78 DVEGPVLENISRRCGGFLRQISLRGCQS--MTD---NSLNILA--QYCNNVEDINLNLCKKLTDATSLALSK--HCAKLQ  148 (189)
Q Consensus        78 ~~~~~~l~~l~~~~~~~L~~L~l~~~~~--~~~---~~l~~l~--~~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~L~  148 (189)
                      .+++..+..++....++|++|+|.....  ..+   ..+..+.  ..+|+|+.|.|.+| .+++.....++.  .+|+|+
T Consensus       204 ~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~  282 (362)
T 2ra8_A          204 GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLE  282 (362)
T ss_dssp             BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCS
T ss_pred             CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCC
Confidence            4667777777764333599998853111  111   1222222  25789999999886 577666666664  578999


Q ss_pred             EEecCCCCCCCHHHHHHHHh---cCCCCCeeecccCcCcCCCC
Q psy9585         149 RLDLASCSFITDQSLKALAD---GCRNLTHINISWCINITENG  188 (189)
Q Consensus       149 ~L~L~~c~~i~~~~l~~l~~---~~~~L~~L~l~~c~~lt~~~  188 (189)
                      +|+|++ ..+++.+...+..   .+++|+.|++++| .++++|
T Consensus       283 ~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~  323 (362)
T 2ra8_A          283 TMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEM  323 (362)
T ss_dssp             EEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHH
T ss_pred             EEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHH
Confidence            999987 6699998888764   4789999999988 587653

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.48  E-value=2.7e-08  Score=75.20  Aligned_cols=46  Identities=30%  Similarity=0.469  Sum_probs=42.1

Q ss_pred             hhcCCCCHHHHHHHHhcCChhhhH-HHhhhhHHHHHhhhCCCCccee
Q psy9585          25 LINKKLPKELLLRIFSYLDVTSLC-RCAQVSKAWNILALDGSNWSRI   70 (189)
Q Consensus        25 ~~~~~LP~~il~~I~~~L~~~~~~-~~~~v~~~w~~~~~~~~~~~~~   70 (189)
                      ..+..||+|++..||++|+..+++ +|+.|||+|+.++.++.+|+..
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~   95 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK   95 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHH
Confidence            467899999999999999999999 9999999999999888777765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.47  E-value=4.4e-07  Score=70.69  Aligned_cols=119  Identities=13%  Similarity=0.119  Sum_probs=77.4

Q ss_pred             CcceeeccCCCC-CCCHHHHHHHHHHcCCCccEEeecCCCCCCH---HHHHHHHHcC-CCcceEecccCCCCCHHHHHHH
Q psy9585          66 NWSRIDLFNFQT-DVEGPVLENISRRCGGFLRQISLRGCQSMTD---NSLNILAQYC-NNVEDINLNLCKKLTDATSLAL  140 (189)
Q Consensus        66 ~~~~~~l~~~~~-~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~---~~l~~l~~~~-~~L~~L~l~~~~~i~~~~~~~l  140 (189)
                      .++.++++...- ......+..+......+|++|+++++. +++   ..+......+ ++|++|+++++ .+++.....+
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l  129 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEF  129 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHH
Confidence            678888876531 122344444444543459999999864 443   3344444455 79999999995 5666555555


Q ss_pred             HH---c-CCCCCEEecCCCCCCCHHHHHHHH---hcCC-CCCeeecccCcCcCCCC
Q psy9585         141 SK---H-CAKLQRLDLASCSFITDQSLKALA---DGCR-NLTHINISWCINITENG  188 (189)
Q Consensus       141 ~~---~-~~~L~~L~L~~c~~i~~~~l~~l~---~~~~-~L~~L~l~~c~~lt~~~  188 (189)
                      ..   . +++|++|+|++| .+++.+...+.   ...+ +|++|++++| .+++.|
T Consensus       130 ~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~  183 (362)
T 3goz_A          130 KQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKN  183 (362)
T ss_dssp             HHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSC
T ss_pred             HHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhh
Confidence            44   2 469999999995 47765544443   3344 8999999999 676654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.38  E-value=3.5e-05  Score=54.89  Aligned_cols=98  Identities=13%  Similarity=0.287  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHH---cCCCcceEecccCCCCCHHHHHHHHH---cCCCCCEEecCC
Q psy9585          81 GPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQ---YCNNVEDINLNLCKKLTDATSLALSK---HCAKLQRLDLAS  154 (189)
Q Consensus        81 ~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~L~~  154 (189)
                      +..+..+...... |++|++++...+++++.+.++.   ....|+.|+|++| .+++.+...|+.   ..+.|++|+|++
T Consensus        30 ~~~l~~ll~~n~~-L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~  107 (197)
T 1pgv_A           30 ESCINRLREDDTD-LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES  107 (197)
T ss_dssp             HHHHHHHHTTCSS-CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred             HHHHHHHHhcCCC-ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC
Confidence            3456666666554 9999998755788887766654   4557999999985 788888777664   458899999998


Q ss_pred             CCCCCHHHHHHHHhcC---CCCCeeecccC
Q psy9585         155 CSFITDQSLKALADGC---RNLTHINISWC  181 (189)
Q Consensus       155 c~~i~~~~l~~l~~~~---~~L~~L~l~~c  181 (189)
                       ..|++.+...|+..+   ..|++|+|+++
T Consensus       108 -N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          108 -NFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             -SBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             -CcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence             669999988887765   46999999876

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.28  E-value=1.1e-07  Score=75.69  Aligned_cols=51  Identities=27%  Similarity=0.511  Sum_probs=45.6

Q ss_pred             hhhhcCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhC-CCCcceeecc
Q psy9585          23 EALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALD-GSNWSRIDLF   73 (189)
Q Consensus        23 ~~~~~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~-~~~~~~~~l~   73 (189)
                      ..+.+..||+|++.+||+||+..++.++++||++|++++.+ +.+|+.+.+.
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~   62 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLIS   62 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence            35778999999999999999999999999999999999887 7888887653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.18  E-value=2.4e-07  Score=73.50  Aligned_cols=49  Identities=33%  Similarity=0.592  Sum_probs=44.7

Q ss_pred             hhhhcCCCCHH----HHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceee
Q psy9585          23 EALINKKLPKE----LLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRID   71 (189)
Q Consensus        23 ~~~~~~~LP~~----il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~   71 (189)
                      ..+.+..||+|    ++.+||+||+..++.++++|||+|+.++.++.+|+.+-
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~   59 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLI   59 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence            35778999999    99999999999999999999999999998888898763

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.14  E-value=5.8e-07  Score=71.35  Aligned_cols=49  Identities=35%  Similarity=0.518  Sum_probs=44.2

Q ss_pred             hhhhcCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceee
Q psy9585          23 EALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRID   71 (189)
Q Consensus        23 ~~~~~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~   71 (189)
                      ..+.+..||+|++.+||+||+..++.++++||++|+.++.++.+|+.+-
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~   63 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC   63 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhe
Confidence            4677999999999999999999999999999999999988877787654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.14  E-value=3.1e-06  Score=57.33  Aligned_cols=80  Identities=20%  Similarity=0.278  Sum_probs=41.2

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT  174 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~  174 (189)
                      |+.|+++++ .++..   .....+++|+.|+++++ .++.. +......+++|++|+++++. +++.........+++|+
T Consensus        44 L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~  116 (149)
T 2je0_A           44 LEFLSTINV-GLTSI---ANLPKLNKLKKLELSDN-RVSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLK  116 (149)
T ss_dssp             CCEEECTTS-CCCCC---TTCCCCTTCCEEECCSS-CCCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCC
T ss_pred             CcEEECcCC-CCCCc---hhhhcCCCCCEEECCCC-cccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCC
Confidence            666666664 23222   22235566666666664 34321 33333446666666666633 55432222233466666


Q ss_pred             eeecccC
Q psy9585         175 HINISWC  181 (189)
Q Consensus       175 ~L~l~~c  181 (189)
                      +|++++|
T Consensus       117 ~L~l~~N  123 (149)
T 2je0_A          117 SLDLFNC  123 (149)
T ss_dssp             EEECTTC
T ss_pred             EEeCcCC
Confidence            6666666

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.08  E-value=1.1e-06  Score=62.49  Aligned_cols=84  Identities=17%  Similarity=0.257  Sum_probs=47.7

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT  174 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~  174 (189)
                      |++|.++++ .+++.....+ ..+++|+.|+++++ .+++.....+. .+++|++|+|++|..+++-  .. ...+++|+
T Consensus        90 L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~--~~-l~~l~~L~  162 (197)
T 4ezg_A           90 LERLRIMGK-DVTSDKIPNL-SGLTSLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGAITDI--MP-LKTLPELK  162 (197)
T ss_dssp             CCEEEEECT-TCBGGGSCCC-TTCTTCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTBCCCC--GG-GGGCSSCC
T ss_pred             CCEEEeECC-ccCcccChhh-cCCCCCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCCcccc--Hh-hcCCCCCC
Confidence            666666663 3333222222 25667777777774 45554444443 4677777777775535442  12 34467777


Q ss_pred             eeecccCcCcCC
Q psy9585         175 HINISWCINITE  186 (189)
Q Consensus       175 ~L~l~~c~~lt~  186 (189)
                      +|++++| .+++
T Consensus       163 ~L~l~~n-~i~~  173 (197)
T 4ezg_A          163 SLNIQFD-GVHD  173 (197)
T ss_dssp             EEECTTB-CCCC
T ss_pred             EEECCCC-CCcC
Confidence            7777777 3443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.05  E-value=1.8e-06  Score=61.41  Aligned_cols=80  Identities=16%  Similarity=0.196  Sum_probs=38.0

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT  174 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~  174 (189)
                      |++|.++++ .+++..   ....+++|++|+++++ .+++.....+. .+++|++|+|+++ .+++.....+. .+++|+
T Consensus        68 L~~L~l~~n-~~~~~~---~l~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~  139 (197)
T 4ezg_A           68 IKDLTINNI-HATNYN---PISGLSNLERLRIMGK-DVTSDKIPNLS-GLTSLTLLDISHS-AHDDSILTKIN-TLPKVN  139 (197)
T ss_dssp             CSEEEEESC-CCSCCG---GGTTCTTCCEEEEECT-TCBGGGSCCCT-TCTTCCEEECCSS-BCBGGGHHHHT-TCSSCC
T ss_pred             CCEEEccCC-CCCcch---hhhcCCCCCEEEeECC-ccCcccChhhc-CCCCCCEEEecCC-ccCcHhHHHHh-hCCCCC
Confidence            666666554 222211   1224556666666553 34432222222 3556666666653 35444444433 255666


Q ss_pred             eeecccCc
Q psy9585         175 HINISWCI  182 (189)
Q Consensus       175 ~L~l~~c~  182 (189)
                      +|++++|.
T Consensus       140 ~L~L~~n~  147 (197)
T 4ezg_A          140 SIDLSYNG  147 (197)
T ss_dssp             EEECCSCT
T ss_pred             EEEccCCC
Confidence            66666653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.02  E-value=3.6e-07  Score=63.29  Aligned_cols=84  Identities=25%  Similarity=0.287  Sum_probs=43.9

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHH--HHHHhcCCC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSL--KALADGCRN  172 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l--~~l~~~~~~  172 (189)
                      |+.|+++++. ++.. +..+...+++|+.|+++++ .+++-........+++|++|+|+++. ++....  ......+|+
T Consensus        73 L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~  148 (168)
T 2ell_A           73 LKKLELSENR-IFGG-LDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQ  148 (168)
T ss_dssp             CCEEEEESCC-CCSC-CCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSS
T ss_pred             CCEEECcCCc-CchH-HHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCcc
Confidence            6666666643 2221 2333435677777777764 44431111123346777777777743 432211  123445777


Q ss_pred             CCeeecccCc
Q psy9585         173 LTHINISWCI  182 (189)
Q Consensus       173 L~~L~l~~c~  182 (189)
                      |++|++++|.
T Consensus       149 L~~L~l~~n~  158 (168)
T 2ell_A          149 LTYLDGYDRE  158 (168)
T ss_dssp             CCEETTEETT
T ss_pred             CcEecCCCCC
Confidence            7777777763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.00  E-value=2.4e-05  Score=59.52  Aligned_cols=89  Identities=17%  Similarity=0.157  Sum_probs=51.0

Q ss_pred             CCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHH-HHH-HH-HHcCCCCCEEecCCCCCCCH--HHHHHHH
Q psy9585          93 GFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDA-TSL-AL-SKHCAKLQRLDLASCSFITD--QSLKALA  167 (189)
Q Consensus        93 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~-~~~-~l-~~~~~~L~~L~L~~c~~i~~--~~l~~l~  167 (189)
                      .+|++|+++++. ++..... ....+++|+.|+++++ .+... .+. .+ ...+++|++|+|+++. ++.  .....+.
T Consensus       149 ~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~  224 (312)
T 1wwl_A          149 PGLKVLSIAQAH-SLNFSCE-QVRVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALA  224 (312)
T ss_dssp             TTCCEEEEESCS-CCCCCTT-TCCCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHH
T ss_pred             CCCcEEEeeCCC-CccchHH-HhccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHH
Confidence            457788777752 2221111 1225678888888875 33332 221 22 1457888888888854 552  2233455


Q ss_pred             hcCCCCCeeecccCcCcCC
Q psy9585         168 DGCRNLTHINISWCINITE  186 (189)
Q Consensus       168 ~~~~~L~~L~l~~c~~lt~  186 (189)
                      ..+++|++|+++++ .+++
T Consensus       225 ~~l~~L~~L~Ls~N-~l~~  242 (312)
T 1wwl_A          225 AARVQLQGLDLSHN-SLRD  242 (312)
T ss_dssp             HTTCCCSEEECTTS-CCCS
T ss_pred             hcCCCCCEEECCCC-cCCc
Confidence            56788888888887 4544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.94  E-value=1.5e-05  Score=53.93  Aligned_cols=106  Identities=20%  Similarity=0.279  Sum_probs=68.1

Q ss_pred             CCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcC
Q psy9585          65 SNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHC  144 (189)
Q Consensus        65 ~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~  144 (189)
                      ..++.++++..  .+...   ......+ +|+.|+++++. ++.. +......+++|+.|+++++ .+++-........+
T Consensus        42 ~~L~~L~l~~n--~l~~~---~~~~~l~-~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l  112 (149)
T 2je0_A           42 EELEFLSTINV--GLTSI---ANLPKLN-KLKKLELSDNR-VSGG-LEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKL  112 (149)
T ss_dssp             TTCCEEECTTS--CCCCC---TTCCCCT-TCCEEECCSSC-CCSC-THHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGC
T ss_pred             CCCcEEECcCC--CCCCc---hhhhcCC-CCCEEECCCCc-ccch-HHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhC
Confidence            34566666544  23221   1112234 59999999964 4332 3445557999999999995 57654332335569


Q ss_pred             CCCCEEecCCCCCCCHHHH--HHHHhcCCCCCeeeccc
Q psy9585         145 AKLQRLDLASCSFITDQSL--KALADGCRNLTHINISW  180 (189)
Q Consensus       145 ~~L~~L~L~~c~~i~~~~l--~~l~~~~~~L~~L~l~~  180 (189)
                      ++|++|+++++. +++...  ......+|+|++|++++
T Consensus       113 ~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          113 ENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence            999999999964 654332  23455699999999874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.82  E-value=1.4e-05  Score=60.81  Aligned_cols=89  Identities=15%  Similarity=0.130  Sum_probs=50.6

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHH--HHcCCCCCEEecCCCCCCC--HHHHHHHHhc
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLAL--SKHCAKLQRLDLASCSFIT--DQSLKALADG  169 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l--~~~~~~L~~L~L~~c~~i~--~~~l~~l~~~  169 (189)
                      +|++|+++++. ++.... .....+++|++|+|+++...++.++...  ...+++|++|+|++|. ++  ......+...
T Consensus       146 ~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~  222 (310)
T 4glp_A          146 GLKVLSIAQAH-SPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAA  222 (310)
T ss_dssp             CCCEEEEECCS-SCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHH
T ss_pred             CCCEEEeeCCC-cchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhc
Confidence            48888888753 222111 1123567788888887532222222211  1357788888888854 55  2233334556


Q ss_pred             CCCCCeeecccCcCcCC
Q psy9585         170 CRNLTHINISWCINITE  186 (189)
Q Consensus       170 ~~~L~~L~l~~c~~lt~  186 (189)
                      +++|++|+++++ .+++
T Consensus       223 l~~L~~L~Ls~N-~l~~  238 (310)
T 4glp_A          223 GVQPHSLDLSHN-SLRA  238 (310)
T ss_dssp             TCCCSSEECTTS-CCCC
T ss_pred             CCCCCEEECCCC-CCCc
Confidence            788888888877 3443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.73  E-value=1.1e-05  Score=55.76  Aligned_cols=112  Identities=15%  Similarity=0.165  Sum_probs=73.4

Q ss_pred             CCCCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHH
Q psy9585          63 DGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSK  142 (189)
Q Consensus        63 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~  142 (189)
                      .+..++.+++.+..  +.+..+......++ +|+.|+++++. ++..   .....+++|+.|+++++ .++.. +..+..
T Consensus        22 ~~~~L~~L~l~~n~--l~~~~i~~~~~~l~-~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~   92 (168)
T 2ell_A           22 TPAAVRELVLDNCK--SNDGKIEGLTAEFV-NLEFLSLINVG-LISV---SNLPKLPKLKKLELSEN-RIFGG-LDMLAE   92 (168)
T ss_dssp             CTTSCSEEECCSCB--CBTTBCSSCCGGGG-GCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESC-CCCSC-CCHHHH
T ss_pred             CcccCCEEECCCCC--CChhhHHHHHHhCC-CCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCC-cCchH-HHHHHh
Confidence            34667888887653  22111122223445 49999999974 4433   33447889999999996 45542 445555


Q ss_pred             cCCCCCEEecCCCCCCCHHH-HHHHHhcCCCCCeeecccCcCcCC
Q psy9585         143 HCAKLQRLDLASCSFITDQS-LKALADGCRNLTHINISWCINITE  186 (189)
Q Consensus       143 ~~~~L~~L~L~~c~~i~~~~-l~~l~~~~~~L~~L~l~~c~~lt~  186 (189)
                      .+++|++|+|+++ .+++.. +.. ...+++|++|++++| .++.
T Consensus        93 ~l~~L~~L~Ls~N-~l~~~~~~~~-l~~l~~L~~L~l~~N-~l~~  134 (168)
T 2ell_A           93 KLPNLTHLNLSGN-KLKDISTLEP-LKKLECLKSLDLFNC-EVTN  134 (168)
T ss_dssp             HCTTCCEEECBSS-SCCSSGGGGG-GSSCSCCCEEECCSS-GGGT
T ss_pred             hCCCCCEEeccCC-ccCcchhHHH-HhcCCCCCEEEeeCC-cCcc
Confidence            6999999999996 466532 233 345899999999998 4544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.72  E-value=9.7e-05  Score=56.73  Aligned_cols=77  Identities=17%  Similarity=0.242  Sum_probs=41.3

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT  174 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~  174 (189)
                      |++|+++++. +++.  . ....+++|+.|++++| .+++-  .. ...+++|++|+|++|. +++.....+.. +++|+
T Consensus       245 L~~L~l~~n~-l~~~--~-~~~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~~~l~~-l~~L~  314 (347)
T 4fmz_A          245 LTWLEIGTNQ-ISDI--N-AVKDLTKLKMLNVGSN-QISDI--SV-LNNLSQLNSLFLNNNQ-LGNEDMEVIGG-LTNLT  314 (347)
T ss_dssp             CCEEECCSSC-CCCC--G-GGTTCTTCCEEECCSS-CCCCC--GG-GGGCTTCSEEECCSSC-CCGGGHHHHHT-CTTCS
T ss_pred             CCEEECCCCc-cCCC--h-hHhcCCCcCEEEccCC-ccCCC--hh-hcCCCCCCEEECcCCc-CCCcChhHhhc-cccCC
Confidence            6666666542 2221  1 1235566666666664 34331  11 3346677777777643 55444444443 66777


Q ss_pred             eeecccC
Q psy9585         175 HINISWC  181 (189)
Q Consensus       175 ~L~l~~c  181 (189)
                      +|++++|
T Consensus       315 ~L~L~~n  321 (347)
T 4fmz_A          315 TLFLSQN  321 (347)
T ss_dssp             EEECCSS
T ss_pred             EEEccCC
Confidence            7777766

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.71  E-value=0.00017  Score=56.33  Aligned_cols=86  Identities=14%  Similarity=0.204  Sum_probs=67.2

Q ss_pred             cCCCccEEeecCCCCCCHHHHHHHHH--cCCCcceEecccCCCCCHHHHHHHHH---cCCCCCEEecCCCCCCCHHHHHH
Q psy9585          91 CGGFLRQISLRGCQSMTDNSLNILAQ--YCNNVEDINLNLCKKLTDATSLALSK---HCAKLQRLDLASCSFITDQSLKA  165 (189)
Q Consensus        91 ~~~~L~~L~l~~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~L~~c~~i~~~~l~~  165 (189)
                      ++ +|+.|.+.+| .+++.....+..  .+++|++|+|+. ..+++.+...+..   .+++|++|+|++| .+++.++..
T Consensus       251 ~p-~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~  326 (362)
T 2ra8_A          251 FP-NLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKE  326 (362)
T ss_dssp             CT-TCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHH
T ss_pred             CC-CcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHH
Confidence            44 5999999986 566666555553  578999999987 5799988877763   4799999999986 599999999


Q ss_pred             HHhcCCCCCeeecccCc
Q psy9585         166 LADGCRNLTHINISWCI  182 (189)
Q Consensus       166 l~~~~~~L~~L~l~~c~  182 (189)
                      |...+  ...+++++..
T Consensus       327 l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          327 LQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHC--CSEEECCSBC
T ss_pred             HHHHc--CCEEEecCCc
Confidence            98755  4567777653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.60  E-value=6.3e-05  Score=57.19  Aligned_cols=89  Identities=19%  Similarity=0.215  Sum_probs=57.7

Q ss_pred             CccEEeecCCCCCCHHHHHHHH--HcCCCcceEecccCCCCCH--HHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhc
Q psy9585          94 FLRQISLRGCQSMTDNSLNILA--QYCNNVEDINLNLCKKLTD--ATSLALSKHCAKLQRLDLASCSFITDQSLKALADG  169 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~--~~~~~L~~L~l~~~~~i~~--~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~  169 (189)
                      +|+.|+++++...+...+..-.  ..+++|++|+++++ .++.  .....+...+++|++|+|+++. +++.........
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~  251 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDW  251 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCC
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhh
Confidence            5999999986433333332222  57889999999995 5662  3344555678999999999843 554221112233


Q ss_pred             CCCCCeeecccCcCcC
Q psy9585         170 CRNLTHINISWCINIT  185 (189)
Q Consensus       170 ~~~L~~L~l~~c~~lt  185 (189)
                      +++|++|++++| .++
T Consensus       252 l~~L~~L~Ls~N-~l~  266 (312)
T 1wwl_A          252 PSQLNSLNLSFT-GLK  266 (312)
T ss_dssp             CTTCCEEECTTS-CCS
T ss_pred             cCCCCEEECCCC-ccC
Confidence            578999999888 454

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.51  E-value=0.00012  Score=56.18  Aligned_cols=81  Identities=15%  Similarity=0.150  Sum_probs=59.1

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|+++++ .+++.  . ....+++|+.|++++| .+++.....+. .+++|++|+|++|. +++...   ...+++|
T Consensus       266 ~L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~L~~n-~l~~~~~~~l~-~l~~L~~L~L~~n~-l~~~~~---~~~l~~L  335 (347)
T 4fmz_A          266 KLKMLNVGSN-QISDI--S-VLNNLSQLNSLFLNNN-QLGNEDMEVIG-GLTNLTTLFLSQNH-ITDIRP---LASLSKM  335 (347)
T ss_dssp             TCCEEECCSS-CCCCC--G-GGGGCTTCSEEECCSS-CCCGGGHHHHH-TCTTCSEEECCSSS-CCCCGG---GGGCTTC
T ss_pred             CcCEEEccCC-ccCCC--h-hhcCCCCCCEEECcCC-cCCCcChhHhh-ccccCCEEEccCCc-cccccC---hhhhhcc
Confidence            5999999997 44432  2 2458899999999996 57665555554 48999999999966 554222   4559999


Q ss_pred             CeeecccCcCcC
Q psy9585         174 THINISWCINIT  185 (189)
Q Consensus       174 ~~L~l~~c~~lt  185 (189)
                      ++|++++| .++
T Consensus       336 ~~L~l~~N-~i~  346 (347)
T 4fmz_A          336 DSADFANQ-VIK  346 (347)
T ss_dssp             SEESSSCC----
T ss_pred             ceeehhhh-ccc
Confidence            99999999 454

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.48  E-value=0.00018  Score=53.74  Aligned_cols=87  Identities=16%  Similarity=0.166  Sum_probs=58.4

Q ss_pred             HHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHH-HHHHHHHcCCCCCEEecCCCCCCCH------
Q psy9585          88 SRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDA-TSLALSKHCAKLQRLDLASCSFITD------  160 (189)
Q Consensus        88 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~-~~~~l~~~~~~L~~L~L~~c~~i~~------  160 (189)
                      ....+. |++|+|++...-.-..+..+...+++|+.|+|++ +.+++- .+..+. .+ +|++|+|.+. .++.      
T Consensus       166 ~~~l~~-L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~-~l-~L~~L~L~~N-pl~~~~~~~~  240 (267)
T 3rw6_A          166 EENIPE-LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIK-GL-KLEELWLDGN-SLCDTFRDQS  240 (267)
T ss_dssp             HHHCTT-CCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGT-TS-CCSEEECTTS-TTGGGCSSHH
T ss_pred             HhhCCC-CCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcc-cC-CcceEEccCC-cCccccCcch
Confidence            345564 9999999964333334445556899999999998 566643 333322 23 9999999994 4553      


Q ss_pred             HHHHHHHhcCCCCCeeecc
Q psy9585         161 QSLKALADGCRNLTHINIS  179 (189)
Q Consensus       161 ~~l~~l~~~~~~L~~L~l~  179 (189)
                      .....+...+|+|+.|+=.
T Consensus       241 ~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          241 TYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHHHHHHCTTCCEESSC
T ss_pred             hHHHHHHHHCcccCeECCc
Confidence            3344566779999999744

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.37  E-value=5.5e-05  Score=57.46  Aligned_cols=89  Identities=15%  Similarity=0.211  Sum_probs=54.0

Q ss_pred             CccEEeecCCCCCCHHHHHHH--HHcCCCcceEecccCCCCC--HHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHh-
Q psy9585          94 FLRQISLRGCQSMTDNSLNIL--AQYCNNVEDINLNLCKKLT--DATSLALSKHCAKLQRLDLASCSFITDQSLKALAD-  168 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l--~~~~~~L~~L~l~~~~~i~--~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~-  168 (189)
                      +|++|+++++...++..+...  ...+++|++|++++| .++  ......+...+++|++|+|+++. +++.....+.. 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~  247 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRC  247 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhc
Confidence            599999998644444443221  246788999999986 565  23333345568899999998843 54321111111 


Q ss_pred             -cCCCCCeeecccCcCcC
Q psy9585         169 -GCRNLTHINISWCINIT  185 (189)
Q Consensus       169 -~~~~L~~L~l~~c~~lt  185 (189)
                       ..++|++|++++| .++
T Consensus       248 ~~~~~L~~L~Ls~N-~l~  264 (310)
T 4glp_A          248 MWSSALNSLNLSFA-GLE  264 (310)
T ss_dssp             CCCTTCCCEECCSS-CCC
T ss_pred             cCcCcCCEEECCCC-CCC
Confidence             1267888888777 444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.17  E-value=0.0006  Score=51.73  Aligned_cols=12  Identities=17%  Similarity=0.196  Sum_probs=5.4

Q ss_pred             CCCCCeeecccC
Q psy9585         170 CRNLTHINISWC  181 (189)
Q Consensus       170 ~~~L~~L~l~~c  181 (189)
                      +++|++|++++|
T Consensus       194 l~~L~~L~L~~N  205 (308)
T 1h6u_A          194 LPNLIEVHLKNN  205 (308)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCCCCEEEccCC
Confidence            444444444444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.12  E-value=0.0015  Score=53.25  Aligned_cols=38  Identities=13%  Similarity=0.136  Sum_probs=17.1

Q ss_pred             cCCCcceEecccCCCCCHHH-HHHHHHcCCCCCEEecCCC
Q psy9585         117 YCNNVEDINLNLCKKLTDAT-SLALSKHCAKLQRLDLASC  155 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~-~~~l~~~~~~L~~L~L~~c  155 (189)
                      .+++|+.|+++++ .++.-. .......+++|++|+|+++
T Consensus       359 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N  397 (549)
T 2z81_A          359 AWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN  397 (549)
T ss_dssp             SSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred             ccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC
Confidence            4455555555553 333211 1122334555555555553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.09  E-value=0.00099  Score=50.11  Aligned_cols=12  Identities=17%  Similarity=0.152  Sum_probs=5.7

Q ss_pred             CCCCCeeecccC
Q psy9585         170 CRNLTHINISWC  181 (189)
Q Consensus       170 ~~~L~~L~l~~c  181 (189)
                      +++|++|++++|
T Consensus       177 l~~L~~L~L~~N  188 (291)
T 1h6t_A          177 LTKLQNLYLSKN  188 (291)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CCccCEEECCCC
Confidence            444444444444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=97.08  E-value=0.00013  Score=55.99  Aligned_cols=83  Identities=20%  Similarity=0.358  Sum_probs=41.4

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT  174 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~  174 (189)
                      |++|+++++. ++.  +......+++|++|++++|.....  +......+++|++|+|++|..++. .... ...+++|+
T Consensus       208 L~~L~L~~N~-l~~--l~~~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~-~p~~-~~~l~~L~  280 (328)
T 4fcg_A          208 LKSLKIRNSP-LSA--LGPAIHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLT-LPLD-IHRLTQLE  280 (328)
T ss_dssp             CCEEEEESSC-CCC--CCGGGGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCB-CCTT-GGGCTTCC
T ss_pred             CCEEEccCCC-CCc--CchhhccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhh-cchh-hhcCCCCC
Confidence            6666665542 221  111133566666666666532221  111123466777777776543321 1111 23477788


Q ss_pred             eeecccCcCc
Q psy9585         175 HINISWCINI  184 (189)
Q Consensus       175 ~L~l~~c~~l  184 (189)
                      +|++++|..+
T Consensus       281 ~L~L~~n~~~  290 (328)
T 4fcg_A          281 KLDLRGCVNL  290 (328)
T ss_dssp             EEECTTCTTC
T ss_pred             EEeCCCCCch
Confidence            8888777543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.00  E-value=0.00012  Score=58.36  Aligned_cols=84  Identities=18%  Similarity=0.152  Sum_probs=51.3

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHH-HHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLA-LSKHCAKLQRLDLASCSFITDQSLKALADGCRN  172 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~-l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~  172 (189)
                      +|++|+++++. ++..... ....+++|++|++++| .++...... ....+++|++|+|+++. ++......+...+++
T Consensus        80 ~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~  155 (455)
T 3v47_A           80 SLIILKLDYNQ-FLQLETG-AFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRR  155 (455)
T ss_dssp             TCCEEECTTCT-TCEECTT-TTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTT
T ss_pred             cCCEEeCCCCc-cCccChh-hccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCc
Confidence            48888888753 3322111 2236778888888885 465433322 13357888888888843 543322333455788


Q ss_pred             CCeeecccC
Q psy9585         173 LTHINISWC  181 (189)
Q Consensus       173 L~~L~l~~c  181 (189)
                      |++|++++|
T Consensus       156 L~~L~L~~n  164 (455)
T 3v47_A          156 FHVLDLTFN  164 (455)
T ss_dssp             CCEEECTTC
T ss_pred             ccEEeCCCC
Confidence            888888887

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.00  E-value=0.00012  Score=50.91  Aligned_cols=83  Identities=10%  Similarity=0.034  Sum_probs=41.1

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHH-HHHHHHcCCCCCEEecCCCCCCCHHH--HHHHHhcC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDAT-SLALSKHCAKLQRLDLASCSFITDQS--LKALADGC  170 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~-~~~l~~~~~~L~~L~L~~c~~i~~~~--l~~l~~~~  170 (189)
                      +|+.|+++++ .++... ..+...+++|+.|+++++ .+++-. +.. ...+++|++|+++++. ++...  -..+...+
T Consensus        65 ~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N-~i~~~~~~~~-l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l  139 (176)
T 1a9n_A           65 RLKTLLVNNN-RICRIG-EGLDQALPDLTELILTNN-SLVELGDLDP-LASLKSLTYLCILRNP-VTNKKHYRLYVIYKV  139 (176)
T ss_dssp             SCCEEECCSS-CCCEEC-SCHHHHCTTCCEEECCSC-CCCCGGGGGG-GGGCTTCCEEECCSSG-GGGSTTHHHHHHHHC
T ss_pred             CCCEEECCCC-cccccC-cchhhcCCCCCEEECCCC-cCCcchhhHh-hhcCCCCCEEEecCCC-CCCcHhHHHHHHHHC
Confidence            3666666664 232111 112235667777777764 343211 112 2346777777777643 33211  11123446


Q ss_pred             CCCCeeecccC
Q psy9585         171 RNLTHINISWC  181 (189)
Q Consensus       171 ~~L~~L~l~~c  181 (189)
                      |+|+.|+++++
T Consensus       140 ~~L~~Ld~~~n  150 (176)
T 1a9n_A          140 PQVRVLDFQKV  150 (176)
T ss_dssp             TTCSEETTEEC
T ss_pred             CccceeCCCcC
Confidence            77777777665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=96.99  E-value=9.2e-05  Score=51.46  Aligned_cols=109  Identities=15%  Similarity=0.172  Sum_probs=69.3

Q ss_pred             CCCCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHH
Q psy9585          63 DGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSK  142 (189)
Q Consensus        63 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~  142 (189)
                      .+..++.+++.+..  ++.  +..+... .++|+.|+++++ .++..  . ....+++|+.|+++++ .++.- ...+..
T Consensus        17 ~~~~L~~L~l~~n~--l~~--i~~~~~~-~~~L~~L~Ls~N-~l~~~--~-~l~~l~~L~~L~Ls~N-~l~~~-~~~~~~   85 (176)
T 1a9n_A           17 NAVRDRELDLRGYK--IPV--IENLGAT-LDQFDAIDFSDN-EIRKL--D-GFPLLRRLKTLLVNNN-RICRI-GEGLDQ   85 (176)
T ss_dssp             CTTSCEEEECTTSC--CCS--CCCGGGG-TTCCSEEECCSS-CCCEE--C-CCCCCSSCCEEECCSS-CCCEE-CSCHHH
T ss_pred             CcCCceEEEeeCCC--Cch--hHHhhhc-CCCCCEEECCCC-CCCcc--c-ccccCCCCCEEECCCC-ccccc-Ccchhh
Confidence            34567788877543  221  1223232 324999999996 44432  2 2347889999999995 56531 112334


Q ss_pred             cCCCCCEEecCCCCCCCHHH-HHHHHhcCCCCCeeecccCcCcC
Q psy9585         143 HCAKLQRLDLASCSFITDQS-LKALADGCRNLTHINISWCINIT  185 (189)
Q Consensus       143 ~~~~L~~L~L~~c~~i~~~~-l~~l~~~~~~L~~L~l~~c~~lt  185 (189)
                      .+++|++|+|+++ .+++-. +..+ ..+++|++|++++|+ ++
T Consensus        86 ~l~~L~~L~L~~N-~i~~~~~~~~l-~~l~~L~~L~l~~N~-i~  126 (176)
T 1a9n_A           86 ALPDLTELILTNN-SLVELGDLDPL-ASLKSLTYLCILRNP-VT  126 (176)
T ss_dssp             HCTTCCEEECCSC-CCCCGGGGGGG-GGCTTCCEEECCSSG-GG
T ss_pred             cCCCCCEEECCCC-cCCcchhhHhh-hcCCCCCEEEecCCC-CC
Confidence            5899999999995 465422 2233 358999999999984 44

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=96.97  E-value=0.0013  Score=54.76  Aligned_cols=35  Identities=26%  Similarity=0.292  Sum_probs=16.2

Q ss_pred             cCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         143 HCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       143 ~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      .+++|+.|+|++|. +++...   ...+++|++|+|++|
T Consensus       151 ~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          151 RLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             SCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEECCSS
T ss_pred             ccCCCCEEECcCCc-CCCchh---hccCCCCCEEECcCC
Confidence            34555555555532 322111   233555666665555

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=96.94  E-value=0.0016  Score=52.11  Aligned_cols=12  Identities=8%  Similarity=0.149  Sum_probs=5.8

Q ss_pred             CCCCCeeecccC
Q psy9585         170 CRNLTHINISWC  181 (189)
Q Consensus       170 ~~~L~~L~l~~c  181 (189)
                      +++|+.|++++|
T Consensus       352 l~~L~~L~l~~n  363 (466)
T 1o6v_A          352 LTNINWLSAGHN  363 (466)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CCCCCEEeCCCC
Confidence            444455555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=96.94  E-value=5.5e-05  Score=56.64  Aligned_cols=86  Identities=14%  Similarity=0.135  Sum_probs=53.1

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|++|+++++ .++..... ....+++|++|+++++..++.-.... ...+++|++|+|+++. ++..... ....+++|
T Consensus        57 ~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L  131 (285)
T 1ozn_A           57 NLTILWLHSN-VLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPAT-FHGLGRLHTLHLDRCG-LQELGPG-LFRGLAAL  131 (285)
T ss_dssp             TCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTT-TTTCTTCCEEECTTSC-CCCCCTT-TTTTCTTC
T ss_pred             CCCEEECCCC-ccceeCHh-hcCCccCCCEEeCCCCCCccccCHHH-hcCCcCCCEEECCCCc-CCEECHh-HhhCCcCC
Confidence            4899998875 34322111 22367889999998864344321122 3357899999999854 5432222 23457899


Q ss_pred             CeeecccCcCcC
Q psy9585         174 THINISWCINIT  185 (189)
Q Consensus       174 ~~L~l~~c~~lt  185 (189)
                      ++|+++++ .++
T Consensus       132 ~~L~l~~n-~l~  142 (285)
T 1ozn_A          132 QYLYLQDN-ALQ  142 (285)
T ss_dssp             CEEECCSS-CCC
T ss_pred             CEEECCCC-ccc
Confidence            99999988 444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.94  E-value=8.3e-05  Score=52.69  Aligned_cols=83  Identities=16%  Similarity=0.052  Sum_probs=45.2

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|+++++ .++.... .....+++|++|+|+++ .++.-.... ...+++|++|+|++ ..++.-... ....+++|
T Consensus        55 ~L~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~Ls~N-~l~~i~~~~-f~~l~~L~~L~L~~-N~l~~~~~~-~~~~l~~L  128 (193)
T 2wfh_A           55 HLTLIDLSNN-RISTLSN-QSFSNMTQLLTLILSYN-RLRCIPPRT-FDGLKSLRLLSLHG-NDISVVPEG-AFNDLSAL  128 (193)
T ss_dssp             TCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECCS-SCCCBCCTT-TTTTCTTC
T ss_pred             CCCEEECCCC-cCCEeCH-hHccCCCCCCEEECCCC-ccCEeCHHH-hCCCCCCCEEECCC-CCCCeeChh-hhhcCccc
Confidence            3778877764 2322111 11235677888888773 444221111 23467888888887 335421111 23346788


Q ss_pred             CeeecccCc
Q psy9585         174 THINISWCI  182 (189)
Q Consensus       174 ~~L~l~~c~  182 (189)
                      +.|++++++
T Consensus       129 ~~L~L~~N~  137 (193)
T 2wfh_A          129 SHLAIGANP  137 (193)
T ss_dssp             CEEECCSSC
T ss_pred             cEEEeCCCC
Confidence            888887763

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=96.94  E-value=0.0065  Score=49.41  Aligned_cols=87  Identities=15%  Similarity=0.127  Sum_probs=59.7

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHH--HHcCCCCCEEecCCCCCCCHHH-HHHHHhcC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLAL--SKHCAKLQRLDLASCSFITDQS-LKALADGC  170 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l--~~~~~~L~~L~L~~c~~i~~~~-l~~l~~~~  170 (189)
                      +|++|.+.++. ++.-. ..+...+++|++|+++++ .+++......  ...+++|++|+|+++. ++.-. .......+
T Consensus       311 ~L~~L~l~~n~-l~~ip-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l  386 (549)
T 2z81_A          311 KVKRITVENSK-VFLVP-CSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTL  386 (549)
T ss_dssp             TCCEEEEESSC-CCCCC-HHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGC
T ss_pred             cceEEEeccCc-cccCC-HHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcC
Confidence            49999998863 33111 223347899999999995 6776544332  3468999999999965 65432 22345568


Q ss_pred             CCCCeeecccCcCcC
Q psy9585         171 RNLTHINISWCINIT  185 (189)
Q Consensus       171 ~~L~~L~l~~c~~lt  185 (189)
                      ++|++|++++| .++
T Consensus       387 ~~L~~L~Ls~N-~l~  400 (549)
T 2z81_A          387 KNLTSLDISRN-TFH  400 (549)
T ss_dssp             TTCCEEECTTC-CCC
T ss_pred             CCCCEEECCCC-CCc
Confidence            99999999998 444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=96.91  E-value=0.00014  Score=57.83  Aligned_cols=113  Identities=14%  Similarity=0.061  Sum_probs=67.5

Q ss_pred             CCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcC
Q psy9585          65 SNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHC  144 (189)
Q Consensus        65 ~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~  144 (189)
                      ..++.++++..  .+....- .....+. +|++|+++++....... ......+++|++|+|+++ .++...... ...+
T Consensus        30 ~~l~~L~Ls~n--~i~~~~~-~~~~~l~-~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l  102 (455)
T 3v47_A           30 AHVNYVDLSLN--SIAELNE-TSFSRLQ-DLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYN-QFLQLETGA-FNGL  102 (455)
T ss_dssp             TTCCEEECCSS--CCCEECT-TTTSSCT-TCCEEECCCCSTTCEEC-TTTTTTCTTCCEEECTTC-TTCEECTTT-TTTC
T ss_pred             CccCEEEecCC--ccCcCCh-hHhccCc-cccEEECcCCcccceEC-cccccccccCCEEeCCCC-ccCccChhh-ccCc
Confidence            44667777644  2221100 1112334 49999999864321111 112346899999999985 454322222 3458


Q ss_pred             CCCCEEecCCCCCCCHHHHHH-HHhcCCCCCeeecccCcCcCC
Q psy9585         145 AKLQRLDLASCSFITDQSLKA-LADGCRNLTHINISWCINITE  186 (189)
Q Consensus       145 ~~L~~L~L~~c~~i~~~~l~~-l~~~~~~L~~L~l~~c~~lt~  186 (189)
                      ++|++|+|++|. +++..+.. ....+++|++|++++| .++.
T Consensus       103 ~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~  143 (455)
T 3v47_A          103 ANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDN-NIKK  143 (455)
T ss_dssp             TTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSS-BCCS
T ss_pred             ccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCC-ccCc
Confidence            999999999965 66544443 2345899999999998 4543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=96.91  E-value=0.00063  Score=51.20  Aligned_cols=75  Identities=19%  Similarity=0.203  Sum_probs=32.4

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT  174 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~  174 (189)
                      |+.|.++++. +++  +.. ...+++|+.|+++++ .+++  +.. ...+++|++|+|+++. +++-  .. ...+++|+
T Consensus        92 L~~L~l~~n~-l~~--~~~-l~~l~~L~~L~L~~n-~i~~--~~~-l~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~  159 (291)
T 1h6t_A           92 LGWLFLDENK-VKD--LSS-LKDLKKLKSLSLEHN-GISD--ING-LVHLPQLESLYLGNNK-ITDI--TV-LSRLTKLD  159 (291)
T ss_dssp             CCEEECCSSC-CCC--GGG-GTTCTTCCEEECTTS-CCCC--CGG-GGGCTTCCEEECCSSC-CCCC--GG-GGGCTTCS
T ss_pred             CCEEECCCCc-CCC--Chh-hccCCCCCEEECCCC-cCCC--Chh-hcCCCCCCEEEccCCc-CCcc--hh-hccCCCCC
Confidence            5666665542 222  111 224555555555553 2332  111 2235555555555532 3321  11 22355555


Q ss_pred             eeecccC
Q psy9585         175 HINISWC  181 (189)
Q Consensus       175 ~L~l~~c  181 (189)
                      +|++++|
T Consensus       160 ~L~L~~N  166 (291)
T 1h6t_A          160 TLSLEDN  166 (291)
T ss_dssp             EEECCSS
T ss_pred             EEEccCC
Confidence            5555555

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=96.90  E-value=0.00099  Score=50.51  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=15.5

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      +++|++|+|+++. +++-  .. ...+++|++|++++|
T Consensus       150 l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          150 LTNLQYLSIGNAQ-VSDL--TP-LANLSKLTTLKADDN  183 (308)
T ss_dssp             CTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEECCSS
T ss_pred             CCCccEEEccCCc-CCCC--hh-hcCCCCCCEEECCCC
Confidence            4555555555532 3321  11 233555555555555

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.90  E-value=6.2e-05  Score=54.41  Aligned_cols=83  Identities=16%  Similarity=0.073  Sum_probs=43.2

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|+++++ .++.-. ..+...+++|+.|+|+++ .++.-.... ...+++|++|+|+++ .++...... ...+++|
T Consensus        81 ~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L  154 (220)
T 2v9t_B           81 SLNSLVLYGN-KITELP-KSLFEGLFSLQLLLLNAN-KINCLRVDA-FQDLHNLNLLSLYDN-KLQTIAKGT-FSPLRAI  154 (220)
T ss_dssp             SCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTC
T ss_pred             CCCEEECCCC-cCCccC-HhHccCCCCCCEEECCCC-CCCEeCHHH-cCCCCCCCEEECCCC-cCCEECHHH-HhCCCCC
Confidence            3777777664 222110 112235677777777763 344221112 234677777777773 343222122 2336777


Q ss_pred             CeeecccCc
Q psy9585         174 THINISWCI  182 (189)
Q Consensus       174 ~~L~l~~c~  182 (189)
                      ++|++++++
T Consensus       155 ~~L~L~~N~  163 (220)
T 2v9t_B          155 QTMHLAQNP  163 (220)
T ss_dssp             CEEECCSSC
T ss_pred             CEEEeCCCC
Confidence            888887763

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=96.90  E-value=0.0007  Score=56.36  Aligned_cols=57  Identities=25%  Similarity=0.320  Sum_probs=28.2

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      .+++|+.|+|++| .+++..  . ...+++|+.|+|++|. +++  +.. ...+++|+.|+|++|
T Consensus       151 ~l~~L~~L~Ls~N-~l~~~~--~-l~~l~~L~~L~Ls~N~-i~~--l~~-l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          151 RLTKLDTLSLEDN-QISDIV--P-LAGLTKLQNLYLSKNH-ISD--LRA-LAGLKNLDVLELFSQ  207 (605)
T ss_dssp             SCTTCSEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSC-CCB--CGG-GTTCTTCSEEECCSE
T ss_pred             ccCCCCEEECcCC-cCCCch--h-hccCCCCCEEECcCCC-CCC--ChH-HccCCCCCEEEccCC
Confidence            4555666666553 233211  1 3345666666666632 433  122 223566666666665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=96.89  E-value=0.00035  Score=56.62  Aligned_cols=37  Identities=19%  Similarity=0.368  Sum_probs=15.0

Q ss_pred             cCCCcceEecccCCCCCH-HHHHHHHHcCCCCCEEecCC
Q psy9585         117 YCNNVEDINLNLCKKLTD-ATSLALSKHCAKLQRLDLAS  154 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~L~~L~L~~  154 (189)
                      .+++|++|+++++ .++. ..+......+++|++|+|++
T Consensus       346 ~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~  383 (520)
T 2z7x_B          346 HLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQ  383 (520)
T ss_dssp             CCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCS
T ss_pred             cCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCC
Confidence            3444555555543 2332 11222223344555555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=96.85  E-value=0.00019  Score=55.09  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=15.4

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASC  155 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c  155 (189)
                      .+++|++|+|+++ .++  .+..-...+++|++|+|++|
T Consensus       125 ~l~~L~~L~Ls~n-~l~--~lp~~l~~l~~L~~L~L~~n  160 (328)
T 4fcg_A          125 QFAGLETLTLARN-PLR--ALPASIASLNRLRELSIRAC  160 (328)
T ss_dssp             GGTTCSEEEEESC-CCC--CCCGGGGGCTTCCEEEEEEE
T ss_pred             ccCCCCEEECCCC-ccc--cCcHHHhcCcCCCEEECCCC
Confidence            4455555555543 232  11111223455555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=96.84  E-value=0.0022  Score=51.36  Aligned_cols=12  Identities=8%  Similarity=0.124  Sum_probs=6.5

Q ss_pred             CCCCCeeecccC
Q psy9585         170 CRNLTHINISWC  181 (189)
Q Consensus       170 ~~~L~~L~l~~c  181 (189)
                      +++|++|++++|
T Consensus       374 l~~L~~L~l~~n  385 (466)
T 1o6v_A          374 LTRITQLGLNDQ  385 (466)
T ss_dssp             CTTCCEEECCCE
T ss_pred             CCCCCEEeccCC
Confidence            455555555555

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.78  E-value=4.3e-05  Score=54.07  Aligned_cols=83  Identities=14%  Similarity=0.141  Sum_probs=46.6

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|++|+++++ .++... ......+++|++|+|+++ .++.-.... ...+++|++|+|++ ..++...... ...+++|
T Consensus        55 ~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L  128 (192)
T 1w8a_A           55 HLVKLELKRN-QLTGIE-PNAFEGASHIQELQLGEN-KIKEISNKM-FLGLHQLKTLNLYD-NQISCVMPGS-FEHLNSL  128 (192)
T ss_dssp             TCCEEECCSS-CCCCBC-TTTTTTCTTCCEEECCSC-CCCEECSSS-STTCTTCCEEECCS-SCCCEECTTS-STTCTTC
T ss_pred             CCCEEECCCC-CCCCcC-HhHcCCcccCCEEECCCC-cCCccCHHH-hcCCCCCCEEECCC-CcCCeeCHHH-hhcCCCC
Confidence            3888888775 332211 112235677888888773 454322111 23467888888887 3454321122 2346788


Q ss_pred             CeeecccCc
Q psy9585         174 THINISWCI  182 (189)
Q Consensus       174 ~~L~l~~c~  182 (189)
                      ++|++++++
T Consensus       129 ~~L~L~~N~  137 (192)
T 1w8a_A          129 TSLNLASNP  137 (192)
T ss_dssp             CEEECTTCC
T ss_pred             CEEEeCCCC
Confidence            888888873

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=96.78  E-value=0.00053  Score=55.58  Aligned_cols=36  Identities=8%  Similarity=0.093  Sum_probs=20.1

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLC  129 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~  129 (189)
                      +|+.|.++++..-.-..+......+++|+.|+++++
T Consensus       349 ~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N  384 (520)
T 2z7x_B          349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN  384 (520)
T ss_dssp             SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred             CCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence            367777766532222233334446677777777764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=96.78  E-value=8e-05  Score=53.83  Aligned_cols=83  Identities=14%  Similarity=0.076  Sum_probs=46.7

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|++|.++++. ++... ......+++|++|+|+++ .++.-.... ...+++|++|+|+++ .++...... ...+++|
T Consensus        82 ~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L  155 (220)
T 2v70_A           82 GVNEILLTSNR-LENVQ-HKMFKGLESLKTLMLRSN-RITCVGNDS-FIGLSSVRLLSLYDN-QITTVAPGA-FDTLHSL  155 (220)
T ss_dssp             TCCEEECCSSC-CCCCC-GGGGTTCSSCCEEECTTS-CCCCBCTTS-STTCTTCSEEECTTS-CCCCBCTTT-TTTCTTC
T ss_pred             CCCEEECCCCc-cCccC-HhHhcCCcCCCEEECCCC-cCCeECHhH-cCCCccCCEEECCCC-cCCEECHHH-hcCCCCC
Confidence            47888887743 22211 112336778888888774 444211111 234678888888873 344321122 2347788


Q ss_pred             CeeecccCc
Q psy9585         174 THINISWCI  182 (189)
Q Consensus       174 ~~L~l~~c~  182 (189)
                      ++|++++++
T Consensus       156 ~~L~L~~N~  164 (220)
T 2v70_A          156 STLNLLANP  164 (220)
T ss_dssp             CEEECCSCC
T ss_pred             CEEEecCcC
Confidence            888888773

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.76  E-value=0.00011  Score=52.03  Aligned_cols=78  Identities=15%  Similarity=0.125  Sum_probs=49.5

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHH---------HHH
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQ---------SLK  164 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~---------~l~  164 (189)
                      +|+.|+++++ .++.  +.. ...+++|+.|+++++ .+++-........+++|++|+++++. +++.         ...
T Consensus        94 ~L~~L~L~~N-~l~~--l~~-~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~  167 (198)
T 1ds9_A           94 TLEELWISYN-QIAS--LSG-IEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRI  167 (198)
T ss_dssp             HCSEEEEEEE-ECCC--HHH-HHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHH
T ss_pred             cCCEEECcCC-cCCc--CCc-cccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHH
Confidence            3888888876 3333  222 236788999999885 56542221233458999999999853 4332         223


Q ss_pred             HHHhcCCCCCeee
Q psy9585         165 ALADGCRNLTHIN  177 (189)
Q Consensus       165 ~l~~~~~~L~~L~  177 (189)
                      .+...+|+|+.|+
T Consensus       168 ~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          168 EVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHCSSCSEEC
T ss_pred             HHHHhCCCcEEEC
Confidence            3455689999887

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=96.76  E-value=3.9e-05  Score=58.01  Aligned_cols=61  Identities=16%  Similarity=0.177  Sum_probs=25.7

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      .+++|+.|+++++ .++...... ...+++|++|+|+++. +++..... ...+++|++|++++|
T Consensus       173 ~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          173 ELRNLTFLDLSQC-QLEQLSPTA-FNSLSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSLN  233 (306)
T ss_dssp             TCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTSC-CSBCCSGG-GTTCTTCCEEECTTS
T ss_pred             hCcCCCEEECCCC-CcCCcCHHH-hcCCCCCCEEECCCCc-cCccChhh-ccCcccCCEeECCCC
Confidence            3445555555553 233211111 1234555555555532 32211111 123555666666555

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=96.75  E-value=0.00019  Score=55.33  Aligned_cols=86  Identities=14%  Similarity=0.097  Sum_probs=47.6

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|++|+++++ .++..... ....+++|++|+++++ .++.-.. .....+++|++|+|+++ .++.-........+++|
T Consensus        77 ~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L  151 (353)
T 2z80_A           77 NLQALVLTSN-GINTIEED-SFSSLGSLEHLDLSYN-YLSNLSS-SWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKL  151 (353)
T ss_dssp             TCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSSCCH-HHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTC
T ss_pred             CCCEEECCCC-ccCccCHh-hcCCCCCCCEEECCCC-cCCcCCH-hHhCCCccCCEEECCCC-CCcccCchhhhccCCCC
Confidence            3777777775 33321111 1235677888888774 4443211 22345788888888874 34421110123447788


Q ss_pred             CeeecccCcCc
Q psy9585         174 THINISWCINI  184 (189)
Q Consensus       174 ~~L~l~~c~~l  184 (189)
                      ++|++++|..+
T Consensus       152 ~~L~l~~n~~~  162 (353)
T 2z80_A          152 QILRVGNMDTF  162 (353)
T ss_dssp             CEEEEEESSSC
T ss_pred             cEEECCCCccc
Confidence            88888877433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.71  E-value=0.00038  Score=57.52  Aligned_cols=80  Identities=15%  Similarity=0.172  Sum_probs=52.1

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHH-HHHHHhcCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQS-LKALADGCRN  172 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~-l~~l~~~~~~  172 (189)
                      +|+.|+++++ .++  .+......+++|+.|+|+++ .++.  +.. ...+++|++|+|+++ .++... ...+ ..+++
T Consensus       464 ~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~--lp~-l~~l~~L~~L~Ls~N-~l~~~~~p~~l-~~l~~  534 (567)
T 1dce_A          464 LVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDN-ALEN--VDG-VANLPRLQELLLCNN-RLQQSAAIQPL-VSCPR  534 (567)
T ss_dssp             TCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSS-CCCC--CGG-GTTCSSCCEEECCSS-CCCSSSTTGGG-GGCTT
T ss_pred             cCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCC-CCCC--Ccc-cCCCCCCcEEECCCC-CCCCCCCcHHH-hcCCC
Confidence            4888888875 333  22223447888888888884 5553  333 345788999999884 465432 2333 34888


Q ss_pred             CCeeecccCc
Q psy9585         173 LTHINISWCI  182 (189)
Q Consensus       173 L~~L~l~~c~  182 (189)
                      |+.|+++++.
T Consensus       535 L~~L~L~~N~  544 (567)
T 1dce_A          535 LVLLNLQGNS  544 (567)
T ss_dssp             CCEEECTTSG
T ss_pred             CCEEEecCCc
Confidence            9999998883

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=96.70  E-value=7.6e-05  Score=55.58  Aligned_cols=82  Identities=18%  Similarity=0.212  Sum_probs=35.6

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT  174 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~  174 (189)
                      |++|+++++. ++..... ....+++|++|+++++ .++...... ...+++|++|+|+++. ++...+......+++|+
T Consensus        78 L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~  152 (276)
T 2z62_A           78 LSTLILTGNP-IQSLALG-AFSGLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLE  152 (276)
T ss_dssp             CCEEECTTCC-CCEECTT-TTTTCTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCC
T ss_pred             CCEEECCCCc-cCccChh-hhcCCccccEEECCCC-CccccCchh-cccCCCCCEEECcCCc-cceecCchhhccCCCCC
Confidence            6666666542 2211111 1124556666666553 222111001 2235666666666532 33211112223356666


Q ss_pred             eeecccC
Q psy9585         175 HINISWC  181 (189)
Q Consensus       175 ~L~l~~c  181 (189)
                      +|++++|
T Consensus       153 ~L~Ls~N  159 (276)
T 2z62_A          153 HLDLSSN  159 (276)
T ss_dssp             EEECCSS
T ss_pred             EEECCCC
Confidence            6666665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=96.69  E-value=0.0002  Score=53.58  Aligned_cols=62  Identities=15%  Similarity=0.118  Sum_probs=33.5

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCc
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCI  182 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~  182 (189)
                      .+++|+.|+++++ .++...... ...+++|++|+|+++ .+++.....+ ..+++|++|++++++
T Consensus       175 ~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          175 GLHSLDRLLLHQN-RVAHVHPHA-FRDLGRLMTLYLFAN-NLSALPTEAL-APLRALQYLRLNDNP  236 (285)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCHHHH-TTCTTCCEEECCSSC
T ss_pred             CccccCEEECCCC-cccccCHhH-ccCcccccEeeCCCC-cCCcCCHHHc-ccCcccCEEeccCCC
Confidence            4556666666653 333221122 223667777777774 3443322333 347778888887774

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=96.65  E-value=0.00027  Score=52.62  Aligned_cols=85  Identities=19%  Similarity=0.211  Sum_probs=45.8

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|++|.++++ .++... ......+++|++|+++++ .++.-. ......+++|++|+|+++ .++.... .....+++|
T Consensus        86 ~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L  159 (272)
T 3rfs_A           86 NLTYLILTGN-QLQSLP-NGVFDKLTNLKELVLVEN-QLQSLP-DGVFDKLTNLTYLNLAHN-QLQSLPK-GVFDKLTNL  159 (272)
T ss_dssp             TCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTC
T ss_pred             CCCEEECCCC-ccCccC-hhHhcCCcCCCEEECCCC-cCCccC-HHHhccCCCCCEEECCCC-ccCccCH-HHhccCccC
Confidence            3777777765 222111 111235677777777774 343211 111234677888888775 3442111 122347788


Q ss_pred             CeeecccCcCcC
Q psy9585         174 THINISWCINIT  185 (189)
Q Consensus       174 ~~L~l~~c~~lt  185 (189)
                      ++|++++| .++
T Consensus       160 ~~L~l~~n-~l~  170 (272)
T 3rfs_A          160 TELDLSYN-QLQ  170 (272)
T ss_dssp             CEEECCSS-CCC
T ss_pred             CEEECCCC-CcC
Confidence            88888887 444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=96.65  E-value=0.00022  Score=54.45  Aligned_cols=85  Identities=14%  Similarity=0.194  Sum_probs=44.7

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|++|+++++ .++..... ....+++|+.|+++++ .++...... ...+++|++|+|+++. ++  .+..-...+++|
T Consensus       193 ~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~L  265 (330)
T 1xku_A          193 SLTELHLDGN-KITKVDAA-SLKGLNNLAKLGLSFN-SISAVDNGS-LANTPHLRELHLNNNK-LV--KVPGGLADHKYI  265 (330)
T ss_dssp             TCSEEECTTS-CCCEECTG-GGTTCTTCCEEECCSS-CCCEECTTT-GGGSTTCCEEECCSSC-CS--SCCTTTTTCSSC
T ss_pred             cCCEEECCCC-cCCccCHH-HhcCCCCCCEEECCCC-cCceeChhh-ccCCCCCCEEECCCCc-Cc--cCChhhccCCCc
Confidence            3555555553 22221111 2235677777877774 344322112 2346778888888753 44  111112346778


Q ss_pred             CeeecccCcCcCC
Q psy9585         174 THINISWCINITE  186 (189)
Q Consensus       174 ~~L~l~~c~~lt~  186 (189)
                      ++|++++| .++.
T Consensus       266 ~~L~l~~N-~i~~  277 (330)
T 1xku_A          266 QVVYLHNN-NISA  277 (330)
T ss_dssp             CEEECCSS-CCCC
T ss_pred             CEEECCCC-cCCc
Confidence            88888877 4543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=96.65  E-value=0.00013  Score=54.42  Aligned_cols=85  Identities=15%  Similarity=0.166  Sum_probs=49.2

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|++|.++++. ++... ......+++|+.|+++++ .++.-. ......+++|++|+|+++. +++... .....+++|
T Consensus       110 ~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L  183 (272)
T 3rfs_A          110 NLKELVLVENQ-LQSLP-DGVFDKLTNLTYLNLAHN-QLQSLP-KGVFDKLTNLTELDLSYNQ-LQSLPE-GVFDKLTQL  183 (272)
T ss_dssp             TCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTC
T ss_pred             CCCEEECCCCc-CCccC-HHHhccCCCCCEEECCCC-ccCccC-HHHhccCccCCEEECCCCC-cCccCH-HHhcCCccC
Confidence            48888887753 32111 112236678888888875 444211 1223457888888888853 542211 123347888


Q ss_pred             CeeecccCcCcC
Q psy9585         174 THINISWCINIT  185 (189)
Q Consensus       174 ~~L~l~~c~~lt  185 (189)
                      ++|++++| .++
T Consensus       184 ~~L~L~~N-~l~  194 (272)
T 3rfs_A          184 KDLRLYQN-QLK  194 (272)
T ss_dssp             CEEECCSS-CCS
T ss_pred             CEEECCCC-cCC
Confidence            88888887 344

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=96.64  E-value=0.00013  Score=60.13  Aligned_cols=108  Identities=11%  Similarity=0.064  Sum_probs=60.5

Q ss_pred             CCCcceeeccCCCC-CCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHH
Q psy9585          64 GSNWSRIDLFNFQT-DVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSK  142 (189)
Q Consensus        64 ~~~~~~~~l~~~~~-~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~  142 (189)
                      |...+.++++...- .+....+    ..+. +|+.|+++++. ++.-. ...+..+++|++|+|+++ .++.-.. ....
T Consensus        51 p~~~~~LdLs~N~i~~l~~~~f----~~l~-~L~~L~Ls~N~-i~~i~-~~~f~~L~~L~~L~Ls~N-~l~~l~~-~~f~  121 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLGSYSF----FSFP-ELQVLDLSRCE-IQTIE-DGAYQSLSHLSTLILTGN-PIQSLAL-GAFS  121 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTT----TTCT-TCCEEECTTCC-CCEEC-TTTTTTCTTCCEEECTTC-CCCEECG-GGGT
T ss_pred             CcCCCEEEeeCCCCCCCCHHHH----hCCC-CCCEEECCCCc-CCCcC-hhHhcCCCCCCEEEccCC-cCCCCCH-HHhc
Confidence            34567777764321 1111112    2334 48888888863 32111 112336788999999885 4543111 2234


Q ss_pred             cCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCc
Q psy9585         143 HCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCI  182 (189)
Q Consensus       143 ~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~  182 (189)
                      .+++|++|+|+++. ++.-.-.. ..++++|++|+++++.
T Consensus       122 ~L~~L~~L~Ls~N~-l~~l~~~~-~~~L~~L~~L~Ls~N~  159 (635)
T 4g8a_A          122 GLSSLQKLVAVETN-LASLENFP-IGHLKTLKELNVAHNL  159 (635)
T ss_dssp             TCTTCCEEECTTSC-CCCSTTCC-CTTCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCc-CCCCChhh-hhcCcccCeeccccCc
Confidence            58899999998853 44211111 3457889999999883

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=96.64  E-value=0.0001  Score=53.23  Aligned_cols=85  Identities=22%  Similarity=0.187  Sum_probs=52.2

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|.++++ .++...-. ....+++|++|+|+++ .++.-.. .....+++|++|+|+++ .++......+ ..+++|
T Consensus        58 ~L~~L~L~~N-~i~~i~~~-~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L  131 (220)
T 2v70_A           58 QLRKINFSNN-KITDIEEG-AFEGASGVNEILLTSN-RLENVQH-KMFKGLESLKTLMLRSN-RITCVGNDSF-IGLSSV  131 (220)
T ss_dssp             TCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCCCCCG-GGGTTCSSCCEEECTTS-CCCCBCTTSS-TTCTTC
T ss_pred             CCCEEECCCC-cCCEECHH-HhCCCCCCCEEECCCC-ccCccCH-hHhcCCcCCCEEECCCC-cCCeECHhHc-CCCccC
Confidence            4888888875 33322111 2236788999999884 4443221 22345889999999984 3543221222 347899


Q ss_pred             CeeecccCcCcC
Q psy9585         174 THINISWCINIT  185 (189)
Q Consensus       174 ~~L~l~~c~~lt  185 (189)
                      ++|+++++ .++
T Consensus       132 ~~L~L~~N-~l~  142 (220)
T 2v70_A          132 RLLSLYDN-QIT  142 (220)
T ss_dssp             SEEECTTS-CCC
T ss_pred             CEEECCCC-cCC
Confidence            99999988 444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=96.62  E-value=0.00014  Score=53.55  Aligned_cols=85  Identities=14%  Similarity=0.140  Sum_probs=51.2

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|++|+++++ .++... ......+++|+.|+|+++ .++.-. ......+++|++|+|+++ .++.-.. .....+++|
T Consensus        60 ~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L  133 (251)
T 3m19_A           60 KLTWLNLDYN-QLQTLS-AGVFDDLTELGTLGLANN-QLASLP-LGVFDHLTQLDKLYLGGN-QLKSLPS-GVFDRLTKL  133 (251)
T ss_dssp             TCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTC
T ss_pred             cCCEEECCCC-cCCccC-HhHhccCCcCCEEECCCC-cccccC-hhHhcccCCCCEEEcCCC-cCCCcCh-hHhccCCcc
Confidence            4888888875 333211 112236788888888884 454211 122345788999999884 4552111 123457889


Q ss_pred             CeeecccCcCcC
Q psy9585         174 THINISWCINIT  185 (189)
Q Consensus       174 ~~L~l~~c~~lt  185 (189)
                      ++|+++++ .++
T Consensus       134 ~~L~Ls~N-~l~  144 (251)
T 3m19_A          134 KELRLNTN-QLQ  144 (251)
T ss_dssp             CEEECCSS-CCC
T ss_pred             cEEECcCC-cCC
Confidence            99999888 454

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=96.61  E-value=4.9e-05  Score=57.44  Aligned_cols=86  Identities=16%  Similarity=0.154  Sum_probs=48.4

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|+++++. ++... ......+++|++|+++++ .+++.........+++|++|+|+++. +++.....+ ..+++|
T Consensus       127 ~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L  201 (306)
T 2z66_A          127 NLIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF-NSLSSL  201 (306)
T ss_dssp             TCCEEECTTSC-CEECS-TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT-TTCTTC
T ss_pred             CCCEEECCCCc-CCccc-hhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHh-cCCCCC
Confidence            36777776642 21111 112235677888888774 34332222333457888888888853 543222223 347888


Q ss_pred             CeeecccCcCcC
Q psy9585         174 THINISWCINIT  185 (189)
Q Consensus       174 ~~L~l~~c~~lt  185 (189)
                      ++|++++| .++
T Consensus       202 ~~L~L~~N-~l~  212 (306)
T 2z66_A          202 QVLNMSHN-NFF  212 (306)
T ss_dssp             CEEECTTS-CCS
T ss_pred             CEEECCCC-ccC
Confidence            88888887 344

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=96.61  E-value=0.00012  Score=54.58  Aligned_cols=85  Identities=14%  Similarity=0.104  Sum_probs=52.3

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|+++++ .++..... ....+++|++|+++++ .++...... ...+++|++|+++++. ++...-.. ...+++|
T Consensus        53 ~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L  126 (276)
T 2z62_A           53 ELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGN-PIQSLALGA-FSGLSSLQKLVAVETN-LASLENFP-IGHLKTL  126 (276)
T ss_dssp             TCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTC-CCCEECTTT-TTTCTTCCEEECTTSC-CCCSTTCC-CTTCTTC
T ss_pred             CCcEEECCCC-cCCccCHH-HccCCcCCCEEECCCC-ccCccChhh-hcCCccccEEECCCCC-ccccCchh-cccCCCC
Confidence            4999999886 33322111 2236788999999885 444322222 2357899999998854 43211111 3357899


Q ss_pred             CeeecccCcCcC
Q psy9585         174 THINISWCINIT  185 (189)
Q Consensus       174 ~~L~l~~c~~lt  185 (189)
                      ++|+++++ .++
T Consensus       127 ~~L~l~~n-~l~  137 (276)
T 2z62_A          127 KELNVAHN-LIQ  137 (276)
T ss_dssp             CEEECCSS-CCC
T ss_pred             CEEECcCC-ccc
Confidence            99999988 444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.61  E-value=0.00014  Score=51.85  Aligned_cols=83  Identities=16%  Similarity=0.093  Sum_probs=47.4

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|++|+++++. ++... ......+++|+.|+++++ .++.-. ......+++|++|+|+++ .++.... .....+++|
T Consensus        77 ~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L  150 (208)
T 2o6s_A           77 SLTYLNLSTNQ-LQSLP-NGVFDKLTQLKELALNTN-QLQSLP-DGVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSL  150 (208)
T ss_dssp             TCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTC
T ss_pred             CcCEEECCCCc-CCccC-HhHhcCccCCCEEEcCCC-cCcccC-HhHhccCCcCCEEECCCC-ccceeCH-HHhccCCCc
Confidence            48888887752 32111 112236778888888774 444211 112345788888888874 3442111 223447888


Q ss_pred             CeeecccCc
Q psy9585         174 THINISWCI  182 (189)
Q Consensus       174 ~~L~l~~c~  182 (189)
                      ++|++++++
T Consensus       151 ~~L~l~~N~  159 (208)
T 2o6s_A          151 QYIWLHDNP  159 (208)
T ss_dssp             CEEECCSCC
T ss_pred             cEEEecCCC
Confidence            888888874

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.61  E-value=0.00015  Score=50.20  Aligned_cols=84  Identities=15%  Similarity=0.108  Sum_probs=49.8

Q ss_pred             CCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q psy9585          93 GFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRN  172 (189)
Q Consensus        93 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~  172 (189)
                      .+++.|.+++. .++... ......+++|+.|+|++. .++.- ...+...+++|++|+|++ ..++.-.- .....+++
T Consensus        30 ~~l~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~  103 (170)
T 3g39_A           30 TTTQVLYLYDN-QITKLE-PGVFDRLTQLTRLDLDNN-QLTVL-PAGVFDKLTQLTQLSLND-NQLKSIPR-GAFDNLKS  103 (170)
T ss_dssp             TTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCS-SCCCCCCT-TTTTTCTT
T ss_pred             CCCcEEEcCCC-cCCccC-hhhhcCcccCCEEECCCC-CcCcc-ChhhccCCCCCCEEECCC-CccCEeCH-HHhcCCCC
Confidence            45888888875 332211 112236778888888873 45421 112234578888888888 44542111 12334788


Q ss_pred             CCeeecccCc
Q psy9585         173 LTHINISWCI  182 (189)
Q Consensus       173 L~~L~l~~c~  182 (189)
                      |++|++++++
T Consensus       104 L~~L~L~~N~  113 (170)
T 3g39_A          104 LTHIWLLNNP  113 (170)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEEeCCCC
Confidence            8888888873

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=96.61  E-value=5.7e-05  Score=61.80  Aligned_cols=12  Identities=17%  Similarity=0.044  Sum_probs=5.7

Q ss_pred             CCCCCeeecccC
Q psy9585         170 CRNLTHINISWC  181 (189)
Q Consensus       170 ~~~L~~L~l~~c  181 (189)
                      +++|++|+++++
T Consensus       517 l~~L~~L~l~~N  528 (570)
T 2z63_A          517 LTSLQKIWLHTN  528 (570)
T ss_dssp             CTTCCEEECCSS
T ss_pred             ccCCcEEEecCC
Confidence            444444444444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=96.59  E-value=0.00019  Score=55.42  Aligned_cols=84  Identities=19%  Similarity=0.101  Sum_probs=47.1

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|++|+++++ .++.... .....+++|++|+++++ .++.-........+++|++|+++++..++...... ...+++|
T Consensus       101 ~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L  176 (353)
T 2z80_A          101 SLEHLDLSYN-YLSNLSS-SWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD-FAGLTFL  176 (353)
T ss_dssp             TCCEEECCSS-CCSSCCH-HHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEE
T ss_pred             CCCEEECCCC-cCCcCCH-hHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHH-ccCCCCC
Confidence            4888888775 3332111 22346778888888774 34421100123457788888888764343221122 2346788


Q ss_pred             CeeecccC
Q psy9585         174 THINISWC  181 (189)
Q Consensus       174 ~~L~l~~c  181 (189)
                      ++|++++|
T Consensus       177 ~~L~l~~n  184 (353)
T 2z80_A          177 EELEIDAS  184 (353)
T ss_dssp             EEEEEEET
T ss_pred             CEEECCCC
Confidence            88888877

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=96.58  E-value=0.00038  Score=59.43  Aligned_cols=60  Identities=23%  Similarity=0.402  Sum_probs=28.2

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      .+++|++|+++++. ++.. ... ...+++|++|+|+++. +++.....+ ..+++|++|++++|
T Consensus       198 ~l~~L~~L~Ls~n~-l~~~-~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l-~~l~~L~~L~Ls~n  257 (768)
T 3rgz_A          198 RCVNLEFLDVSSNN-FSTG-IPF-LGDCSALQHLDISGNK-LSGDFSRAI-STCTELKLLNISSN  257 (768)
T ss_dssp             TCTTCCEEECCSSC-CCSC-CCB-CTTCCSCCEEECCSSC-CCSCHHHHT-TTCSSCCEEECCSS
T ss_pred             cCCcCCEEECcCCc-CCCC-Ccc-cccCCCCCEEECcCCc-CCCcccHHH-hcCCCCCEEECCCC
Confidence            44555555555532 2210 111 2335666666666633 443323333 23566666666665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.57  E-value=6.8e-05  Score=53.00  Aligned_cols=61  Identities=21%  Similarity=0.178  Sum_probs=26.9

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      .+++|+.|+|+++ .++.-.... ...+++|++|+|++ ..++...... ..++++|++|+++++
T Consensus        52 ~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~L~L~~N  112 (192)
T 1w8a_A           52 RLPHLVKLELKRN-QLTGIEPNA-FEGASHIQELQLGE-NKIKEISNKM-FLGLHQLKTLNLYDN  112 (192)
T ss_dssp             GCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCS-CCCCEECSSS-STTCTTCCEEECCSS
T ss_pred             cCCCCCEEECCCC-CCCCcCHhH-cCCcccCCEEECCC-CcCCccCHHH-hcCCCCCCEEECCCC
Confidence            4556666666553 333211111 22355666666665 2233211111 122455666666555

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=96.56  E-value=0.00026  Score=51.40  Aligned_cols=82  Identities=16%  Similarity=0.051  Sum_probs=44.3

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|+++++ .++... ......+++|+.|+|+++ .++  .+..-...+++|++|+|++. .++.-.. .....+++|
T Consensus        89 ~L~~L~Ls~N-~l~~l~-~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L  161 (229)
T 3e6j_A           89 QLTVLDLGTN-QLTVLP-SAVFDRLVHLKELFMCCN-KLT--ELPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSL  161 (229)
T ss_dssp             TCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCC--SCCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTC
T ss_pred             CcCEEECCCC-cCCccC-hhHhCcchhhCeEeccCC-ccc--ccCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCC
Confidence            3777777764 232111 112235677777777773 444  12112245777888888773 3442111 123346778


Q ss_pred             CeeecccCc
Q psy9585         174 THINISWCI  182 (189)
Q Consensus       174 ~~L~l~~c~  182 (189)
                      +.|++++++
T Consensus       162 ~~L~l~~N~  170 (229)
T 3e6j_A          162 THAYLFGNP  170 (229)
T ss_dssp             CEEECTTSC
T ss_pred             CEEEeeCCC
Confidence            888887763

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=96.55  E-value=0.00075  Score=50.05  Aligned_cols=59  Identities=15%  Similarity=0.112  Sum_probs=35.1

Q ss_pred             CCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcCC
Q psy9585         119 NNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITE  186 (189)
Q Consensus       119 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt~  186 (189)
                      ++|+.|+++++ .+++  +.. ...+++|++|+|+++ .+++-  .. ...+++|++|++++| .+++
T Consensus       106 ~~L~~L~L~~N-~l~~--~~~-l~~l~~L~~L~Ls~N-~i~~~--~~-l~~l~~L~~L~L~~N-~i~~  164 (263)
T 1xeu_A          106 ACLSRLFLDNN-ELRD--TDS-LIHLKNLEILSIRNN-KLKSI--VM-LGFLSKLEVLDLHGN-EITN  164 (263)
T ss_dssp             SSCCEEECCSS-CCSB--SGG-GTTCTTCCEEECTTS-CCCBC--GG-GGGCTTCCEEECTTS-CCCB
T ss_pred             CcccEEEccCC-ccCC--Chh-hcCcccccEEECCCC-cCCCC--hH-HccCCCCCEEECCCC-cCcc
Confidence            56666666664 3433  122 335778888888874 35542  22 334788888888887 4543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=96.54  E-value=0.00091  Score=49.60  Aligned_cols=77  Identities=19%  Similarity=0.201  Sum_probs=53.0

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|.++++ .+++.  .. ...+++|+.|+++++ .+++-  .. ...+++|++|+|+++ .+++.  .. ...+++|
T Consensus       107 ~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N-~i~~~--~~-l~~l~~L~~L~L~~N-~i~~~--~~-l~~l~~L  174 (263)
T 1xeu_A          107 CLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNN-KLKSI--VM-LGFLSKLEVLDLHGN-EITNT--GG-LTRLKKV  174 (263)
T ss_dssp             SCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTS-CCCBC--GG-GGGCTTCCEEECTTS-CCCBC--TT-STTCCCC
T ss_pred             cccEEEccCC-ccCCC--hh-hcCcccccEEECCCC-cCCCC--hH-HccCCCCCEEECCCC-cCcch--HH-hccCCCC
Confidence            4666666664 33321  22 347899999999995 56542  23 445899999999995 46654  33 3458999


Q ss_pred             CeeecccCc
Q psy9585         174 THINISWCI  182 (189)
Q Consensus       174 ~~L~l~~c~  182 (189)
                      +.|+++++.
T Consensus       175 ~~L~l~~N~  183 (263)
T 1xeu_A          175 NWIDLTGQK  183 (263)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEeCCCCc
Confidence            999999884

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=96.53  E-value=0.00016  Score=53.09  Aligned_cols=109  Identities=15%  Similarity=0.121  Sum_probs=65.3

Q ss_pred             CCcceeeccCCCC-CCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHc
Q psy9585          65 SNWSRIDLFNFQT-DVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH  143 (189)
Q Consensus        65 ~~~~~~~l~~~~~-~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~  143 (189)
                      ..++.+++++... .+....+    .... +|+.|+++++ .++... ......+++|++|+|+++ .++.-. ......
T Consensus        59 ~~L~~L~L~~n~l~~~~~~~~----~~l~-~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~  129 (251)
T 3m19_A           59 TKLTWLNLDYNQLQTLSAGVF----DDLT-ELGTLGLANN-QLASLP-LGVFDHLTQLDKLYLGGN-QLKSLP-SGVFDR  129 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTT----TTCT-TCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTT
T ss_pred             ccCCEEECCCCcCCccCHhHh----ccCC-cCCEEECCCC-cccccC-hhHhcccCCCCEEEcCCC-cCCCcC-hhHhcc
Confidence            4567777765421 1111111    2234 5999999985 333211 122347889999999985 555211 122345


Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585         144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT  185 (189)
Q Consensus       144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt  185 (189)
                      +++|++|+|+++ .++...... ...+++|++|+++++ .++
T Consensus       130 l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~  168 (251)
T 3m19_A          130 LTKLKELRLNTN-QLQSIPAGA-FDKLTNLQTLSLSTN-QLQ  168 (251)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCS
T ss_pred             CCcccEEECcCC-cCCccCHHH-cCcCcCCCEEECCCC-cCC
Confidence            899999999984 465322222 335799999999998 454

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=96.51  E-value=0.00027  Score=56.68  Aligned_cols=13  Identities=15%  Similarity=0.005  Sum_probs=7.7

Q ss_pred             cCCCcceEecccC
Q psy9585         117 YCNNVEDINLNLC  129 (189)
Q Consensus       117 ~~~~L~~L~l~~~  129 (189)
                      .+++|+.|+|+++
T Consensus       246 ~l~~L~~L~Ls~n  258 (477)
T 2id5_A          246 HLVYLRFLNLSYN  258 (477)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             CccccCeeECCCC
Confidence            5566666666653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.51  E-value=0.00018  Score=51.30  Aligned_cols=85  Identities=15%  Similarity=0.157  Sum_probs=53.2

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|++|+++++ .++... ......+++|++|+++++ .++.-. ......+++|++|+|+++ .++.... .....+++|
T Consensus        53 ~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L  126 (208)
T 2o6s_A           53 SLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNLSTN-QLQSLP-NGVFDKLTQLKELALNTN-QLQSLPD-GVFDKLTQL  126 (208)
T ss_dssp             TCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTC
T ss_pred             cCcEEECCCC-ccCccC-hhhcCCCCCcCEEECCCC-cCCccC-HhHhcCccCCCEEEcCCC-cCcccCH-hHhccCCcC
Confidence            4999999885 333211 112346789999999885 454211 122345789999999984 3542211 123457899


Q ss_pred             CeeecccCcCcC
Q psy9585         174 THINISWCINIT  185 (189)
Q Consensus       174 ~~L~l~~c~~lt  185 (189)
                      ++|+++++ .++
T Consensus       127 ~~L~l~~N-~l~  137 (208)
T 2o6s_A          127 KDLRLYQN-QLK  137 (208)
T ss_dssp             CEEECCSS-CCS
T ss_pred             CEEECCCC-ccc
Confidence            99999988 454

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=96.48  E-value=0.0002  Score=53.25  Aligned_cols=64  Identities=13%  Similarity=0.146  Sum_probs=33.4

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT  185 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt  185 (189)
                      .+++|+.|+++++ .++.-.. .....+++|++|+|+++. ++...... ...+++|++|++++| .++
T Consensus       131 ~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~  194 (270)
T 2o6q_A          131 SLTKLTYLSLGYN-ELQSLPK-GVFDKLTSLKELRLYNNQ-LKRVPEGA-FDKLTELKTLKLDNN-QLK  194 (270)
T ss_dssp             TCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTT-TTTCTTCCEEECCSS-CCS
T ss_pred             cCcCCCEEECCCC-cCCccCH-hHccCCcccceeEecCCc-CcEeChhH-hccCCCcCEEECCCC-cCC
Confidence            5566777777664 3332111 112346777777777643 33211111 233677788887777 343

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.48  E-value=0.00018  Score=49.87  Aligned_cols=83  Identities=14%  Similarity=0.098  Sum_probs=49.5

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|++|+++++ .++... ......+++|+.|+++++ .++.-. ......+++|++|+|+++ .++.- ...+...+++|
T Consensus        53 ~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L  126 (177)
T 2o6r_A           53 QLTKLSLSQN-QIQSLP-DGVFDKLTKLTILYLHEN-KLQSLP-NGVFDKLTQLKELALDTN-QLKSV-PDGIFDRLTSL  126 (177)
T ss_dssp             TCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTC
T ss_pred             cccEEECCCC-cceEeC-hhHccCCCccCEEECCCC-CccccC-HHHhhCCcccCEEECcCC-cceEe-CHHHhcCCccc
Confidence            4888888875 333111 112236778888888874 454211 112345788889988884 45421 11223457889


Q ss_pred             CeeecccCc
Q psy9585         174 THINISWCI  182 (189)
Q Consensus       174 ~~L~l~~c~  182 (189)
                      ++|++++++
T Consensus       127 ~~L~l~~N~  135 (177)
T 2o6r_A          127 QKIWLHTNP  135 (177)
T ss_dssp             CEEECCSSC
T ss_pred             CEEEecCCC
Confidence            999998874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=96.46  E-value=4.3e-05  Score=58.21  Aligned_cols=83  Identities=11%  Similarity=0.118  Sum_probs=41.8

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|+++++..+....... ...+++|++|+++++ .++...... ...+++|++|+|+++. ++......+ ..+++|
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~Ls~N~-l~~~~p~~~-~~l~~L  151 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSYNA-LSGTLPPSI-SSLPNL  151 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGG-GGGCTTCCEEECCSSE-EESCCCGGG-GGCTTC
T ss_pred             CCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHH-HhCCCCCCEEeCCCCc-cCCcCChHH-hcCCCC
Confidence            48888887422222111111 236677777777764 343211112 2346777777777643 332111122 336677


Q ss_pred             CeeecccC
Q psy9585         174 THINISWC  181 (189)
Q Consensus       174 ~~L~l~~c  181 (189)
                      ++|++++|
T Consensus       152 ~~L~L~~N  159 (313)
T 1ogq_A          152 VGITFDGN  159 (313)
T ss_dssp             CEEECCSS
T ss_pred             CeEECcCC
Confidence            77777666

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.44  E-value=0.00017  Score=50.15  Aligned_cols=84  Identities=20%  Similarity=0.195  Sum_probs=49.9

Q ss_pred             CCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q psy9585          93 GFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRN  172 (189)
Q Consensus        93 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~  172 (189)
                      .+|+.|.+++.. ++... ......+++|+.|+|++. .++.- ...+...+++|++|+|++ ..++.-. ......+++
T Consensus        33 ~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~L~~-N~l~~l~-~~~~~~l~~  106 (174)
T 2r9u_A           33 TDKQRLWLNNNQ-ITKLE-PGVFDHLVNLQQLYFNSN-KLTAI-PTGVFDKLTQLTQLDLND-NHLKSIP-RGAFDNLKS  106 (174)
T ss_dssp             TTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCTT
T ss_pred             CCCcEEEeCCCC-ccccC-HHHhcCCcCCCEEECCCC-CCCcc-ChhHhCCcchhhEEECCC-CccceeC-HHHhccccC
Confidence            458888888753 32211 112336788888888884 55431 112234578888888888 4454211 112334788


Q ss_pred             CCeeecccCc
Q psy9585         173 LTHINISWCI  182 (189)
Q Consensus       173 L~~L~l~~c~  182 (189)
                      |++|++++++
T Consensus       107 L~~L~L~~N~  116 (174)
T 2r9u_A          107 LTHIYLYNNP  116 (174)
T ss_dssp             CSEEECCSSC
T ss_pred             CCEEEeCCCC
Confidence            8888888874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=96.44  E-value=0.00029  Score=55.03  Aligned_cols=81  Identities=10%  Similarity=0.074  Sum_probs=39.2

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT  174 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~  174 (189)
                      |++|+++++. ++.... .....+++|++|+++++ .++. ....+...+++|++|+|+++. ++...... ...+++|+
T Consensus        95 L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~-l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~  168 (390)
T 3o6n_A           95 IQKLYMGFNA-IRYLPP-HVFQNVPLLTVLVLERN-DLSS-LPRGIFHNTPKLTTLSMSNNN-LERIEDDT-FQATTSLQ  168 (390)
T ss_dssp             CCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSC-CCBCCTTT-TSSCTTCC
T ss_pred             cCEEECCCCC-CCcCCH-HHhcCCCCCCEEECCCC-ccCc-CCHHHhcCCCCCcEEECCCCc-cCccChhh-ccCCCCCC
Confidence            6666666542 221111 11235566777777664 3331 111122346677777777643 33211111 23366777


Q ss_pred             eeecccC
Q psy9585         175 HINISWC  181 (189)
Q Consensus       175 ~L~l~~c  181 (189)
                      +|+++++
T Consensus       169 ~L~l~~n  175 (390)
T 3o6n_A          169 NLQLSSN  175 (390)
T ss_dssp             EEECCSS
T ss_pred             EEECCCC
Confidence            7777776

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=96.42  E-value=0.0017  Score=54.21  Aligned_cols=86  Identities=10%  Similarity=0.170  Sum_probs=56.5

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCH-HHHHHHHH-----cCCCCCEEecCCCCCCCHHHHHH--
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD-ATSLALSK-----HCAKLQRLDLASCSFITDQSLKA--  165 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~~-----~~~~L~~L~L~~c~~i~~~~l~~--  165 (189)
                      +|++|.++++...+.  +......+++|+.|+++++..++. .....+..     .+++|++|+|+++. ++  .+..  
T Consensus       250 ~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~--~ip~~~  324 (636)
T 4eco_A          250 DLTDVEVYNCPNLTK--LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK--TFPVET  324 (636)
T ss_dssp             TCCEEEEECCTTCSS--CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS--SCCCHH
T ss_pred             CCCEEEecCCcCCcc--ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC--ccCchh
Confidence            599999998743221  112233788999999999643776 33333332     24899999999854 65  3332  


Q ss_pred             HHhcCCCCCeeecccCcCcC
Q psy9585         166 LADGCRNLTHINISWCINIT  185 (189)
Q Consensus       166 l~~~~~~L~~L~l~~c~~lt  185 (189)
                      ....+++|++|++++| .++
T Consensus       325 ~l~~l~~L~~L~L~~N-~l~  343 (636)
T 4eco_A          325 SLQKMKKLGMLECLYN-QLE  343 (636)
T ss_dssp             HHTTCTTCCEEECCSC-CCE
T ss_pred             hhccCCCCCEEeCcCC-cCc
Confidence            3445889999999988 344

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=96.41  E-value=5.1e-05  Score=57.81  Aligned_cols=88  Identities=10%  Similarity=0.135  Sum_probs=57.1

Q ss_pred             CCccEEeecCCCCCCH-HHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q psy9585          93 GFLRQISLRGCQSMTD-NSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCR  171 (189)
Q Consensus        93 ~~L~~L~l~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~  171 (189)
                      .+++.|+++++. ++. ..+......+++|++|+++++..++...... ...+++|++|+|+++. ++......+ ..++
T Consensus        50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~-l~~~~p~~~-~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTN-VSGAIPDFL-SQIK  125 (313)
T ss_dssp             CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEEC-CEEECCGGG-GGCT
T ss_pred             ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCe-eCCcCCHHH-hCCC
Confidence            359999999863 332 0112234478999999999534444322223 3458999999999854 542222223 4589


Q ss_pred             CCCeeecccCcCcC
Q psy9585         172 NLTHINISWCINIT  185 (189)
Q Consensus       172 ~L~~L~l~~c~~lt  185 (189)
                      +|++|+++++ .++
T Consensus       126 ~L~~L~Ls~N-~l~  138 (313)
T 1ogq_A          126 TLVTLDFSYN-ALS  138 (313)
T ss_dssp             TCCEEECCSS-EEE
T ss_pred             CCCEEeCCCC-ccC
Confidence            9999999998 444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.41  E-value=0.00027  Score=49.02  Aligned_cols=36  Identities=14%  Similarity=0.224  Sum_probs=15.2

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLAS  154 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~  154 (189)
                      .+++|+.|+++++ .++.- ...+...+++|++|+|++
T Consensus        98 ~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           98 KLTQLKELALDTN-QLKSV-PDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             TCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCS
T ss_pred             CCcccCEEECcCC-cceEe-CHHHhcCCcccCEEEecC
Confidence            3455555555542 23210 111122345555555555

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=96.40  E-value=0.00023  Score=52.90  Aligned_cols=83  Identities=12%  Similarity=0.053  Sum_probs=46.5

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|+++++. ++... ......+++|+.|+++++ .++.-... ....+++|++|+|+++ .++..... ....+++|
T Consensus       134 ~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L  207 (270)
T 2o6q_A          134 KLTYLSLGYNE-LQSLP-KGVFDKLTSLKELRLYNN-QLKRVPEG-AFDKLTELKTLKLDNN-QLKRVPEG-AFDSLEKL  207 (270)
T ss_dssp             TCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTC
T ss_pred             CCCEEECCCCc-CCccC-HhHccCCcccceeEecCC-cCcEeChh-HhccCCCcCEEECCCC-cCCcCCHH-HhccccCC
Confidence            36677666642 22111 111236788888888874 34321111 1234788888888874 35421111 23347888


Q ss_pred             CeeecccCc
Q psy9585         174 THINISWCI  182 (189)
Q Consensus       174 ~~L~l~~c~  182 (189)
                      +.|++++++
T Consensus       208 ~~L~l~~N~  216 (270)
T 2o6q_A          208 KMLQLQENP  216 (270)
T ss_dssp             CEEECCSSC
T ss_pred             CEEEecCCC
Confidence            888888874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=96.40  E-value=0.00021  Score=51.84  Aligned_cols=84  Identities=17%  Similarity=0.151  Sum_probs=51.5

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|.++++. ++... ......+++|+.|+|+++ .++.-. ......+++|++|+|++ ..++  .+..-...+++|
T Consensus        65 ~L~~L~L~~N~-l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~L~~L~Ls~-N~l~--~lp~~~~~l~~L  137 (229)
T 3e6j_A           65 NLKELYLGSNQ-LGALP-VGVFDSLTQLTVLDLGTN-QLTVLP-SAVFDRLVHLKELFMCC-NKLT--ELPRGIERLTHL  137 (229)
T ss_dssp             TCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCS-SCCC--SCCTTGGGCTTC
T ss_pred             CCcEEECCCCC-CCCcC-hhhcccCCCcCEEECCCC-cCCccC-hhHhCcchhhCeEeccC-Cccc--ccCcccccCCCC
Confidence            48888888753 32111 112346788999999884 454211 12234578899999988 4455  222223558899


Q ss_pred             CeeecccCcCcC
Q psy9585         174 THINISWCINIT  185 (189)
Q Consensus       174 ~~L~l~~c~~lt  185 (189)
                      ++|+++++ .++
T Consensus       138 ~~L~L~~N-~l~  148 (229)
T 3e6j_A          138 THLALDQN-QLK  148 (229)
T ss_dssp             SEEECCSS-CCC
T ss_pred             CEEECCCC-cCC
Confidence            99999987 444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=96.34  E-value=0.00011  Score=60.72  Aligned_cols=11  Identities=27%  Similarity=0.449  Sum_probs=5.1

Q ss_pred             CCCCCEEecCC
Q psy9585         144 CAKLQRLDLAS  154 (189)
Q Consensus       144 ~~~L~~L~L~~  154 (189)
                      +++|++|+|++
T Consensus       496 l~~L~~L~Ls~  506 (606)
T 3vq2_A          496 LHRLQLLNMSH  506 (606)
T ss_dssp             CTTCCEEECCS
T ss_pred             cccCCEEECCC
Confidence            44444444444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=96.34  E-value=0.00012  Score=59.86  Aligned_cols=87  Identities=14%  Similarity=0.143  Sum_probs=58.6

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|+++++. +.... ......+++|++|++++| .+++..+......+++|++|+|++|. +++.....+ ..+++|
T Consensus       422 ~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L  496 (570)
T 2z63_A          422 NLIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF-NSLSSL  496 (570)
T ss_dssp             TCCEEECTTSC-CEECC-TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT-TTCTTC
T ss_pred             CCCEEeCcCCc-ccccc-hhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCc-cccCChhhh-hcccCC
Confidence            49999999863 22211 123347899999999996 34432233334568999999999964 654323333 358999


Q ss_pred             CeeecccCcCcCC
Q psy9585         174 THINISWCINITE  186 (189)
Q Consensus       174 ~~L~l~~c~~lt~  186 (189)
                      ++|++++| .+++
T Consensus       497 ~~L~l~~n-~l~~  508 (570)
T 2z63_A          497 QVLNMASN-QLKS  508 (570)
T ss_dssp             CEEECCSS-CCSC
T ss_pred             CEEeCCCC-cCCC
Confidence            99999998 4554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.33  E-value=0.00044  Score=58.79  Aligned_cols=106  Identities=22%  Similarity=0.323  Sum_probs=61.8

Q ss_pred             CCCcceeeccCCCC-CCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHH
Q psy9585          64 GSNWSRIDLFNFQT-DVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSK  142 (189)
Q Consensus        64 ~~~~~~~~l~~~~~-~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~  142 (189)
                      ...++.++++.... .+.....     ... +|++|.|+++ .++  .+..-+..+++|+.|+|+++ .++  .+..-..
T Consensus       223 l~~L~~L~Ls~n~l~~l~~~~~-----~l~-~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~  290 (727)
T 4b8c_D          223 DQLWHALDLSNLQIFNISANIF-----KYD-FLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHN-RLT--SLPAELG  290 (727)
T ss_dssp             CCCCCEEECTTSCCSCCCGGGG-----GCC-SCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTS-CCS--SCCSSGG
T ss_pred             CCCCcEEECCCCCCCCCChhhc-----CCC-CCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCC-cCC--ccChhhc
Confidence            35567777765432 1222211     334 4888888875 333  22222346788888888884 455  2222234


Q ss_pred             cCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585         143 HCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT  185 (189)
Q Consensus       143 ~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt  185 (189)
                      .+++|++|+|+++ .++  .+..-...+++|++|+|+++ .++
T Consensus       291 ~l~~L~~L~L~~N-~l~--~lp~~~~~l~~L~~L~L~~N-~l~  329 (727)
T 4b8c_D          291 SCFQLKYFYFFDN-MVT--TLPWEFGNLCNLQFLGVEGN-PLE  329 (727)
T ss_dssp             GGTTCSEEECCSS-CCC--CCCSSTTSCTTCCCEECTTS-CCC
T ss_pred             CCCCCCEEECCCC-CCC--ccChhhhcCCCccEEeCCCC-ccC
Confidence            5788889988884 354  11111345788899999888 344

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.32  E-value=0.00022  Score=50.45  Aligned_cols=81  Identities=14%  Similarity=0.117  Sum_probs=36.2

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      ++++|.+++. .++.  +......+++|+.|+|+++ .++.-.... ...+++|++|+|++. .++...... ..++++|
T Consensus        32 ~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~-f~~l~~L~~L~Ls~N-~l~~i~~~~-f~~l~~L  104 (193)
T 2wfh_A           32 DVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNN-RISTLSNQS-FSNMTQLLTLILSYN-RLRCIPPRT-FDGLKSL  104 (193)
T ss_dssp             TCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCBCCTTT-TTTCTTC
T ss_pred             CCCEEECCCC-cCch--hHHHhhcccCCCEEECCCC-cCCEeCHhH-ccCCCCCCEEECCCC-ccCEeCHHH-hCCCCCC
Confidence            3666666553 2221  1112235566666666653 333211111 223566666666652 233211111 2235666


Q ss_pred             CeeecccC
Q psy9585         174 THINISWC  181 (189)
Q Consensus       174 ~~L~l~~c  181 (189)
                      ++|+++++
T Consensus       105 ~~L~L~~N  112 (193)
T 2wfh_A          105 RLLSLHGN  112 (193)
T ss_dssp             CEEECCSS
T ss_pred             CEEECCCC
Confidence            66666665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=96.31  E-value=4.2e-05  Score=55.81  Aligned_cols=85  Identities=11%  Similarity=0.019  Sum_probs=44.0

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|++|+++++..++...-. ....+++|++|++++|..++.-.. .....+++|++|+|+++. ++.  +.. ...+++|
T Consensus        56 ~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~L~l~~n~-l~~--lp~-~~~l~~L  129 (239)
T 2xwt_C           56 NISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDP-DALKELPLLKFLGIFNTG-LKM--FPD-LTKVYST  129 (239)
T ss_dssp             TCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECT-TSEECCTTCCEEEEEEEC-CCS--CCC-CTTCCBC
T ss_pred             CCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCCCCEEeCCCCC-Ccc--ccc-ccccccc
Confidence            3777777765323221111 123567777777776444442111 112346777777777643 332  222 2346666


Q ss_pred             C---eeecccCcCc
Q psy9585         174 T---HINISWCINI  184 (189)
Q Consensus       174 ~---~L~l~~c~~l  184 (189)
                      +   +|+++++..+
T Consensus       130 ~~L~~L~l~~N~~l  143 (239)
T 2xwt_C          130 DIFFILEITDNPYM  143 (239)
T ss_dssp             CSEEEEEEESCTTC
T ss_pred             ccccEEECCCCcch
Confidence            6   7777776333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=96.31  E-value=0.00023  Score=56.69  Aligned_cols=11  Identities=18%  Similarity=0.214  Sum_probs=4.8

Q ss_pred             CCCCeeecccC
Q psy9585         171 RNLTHINISWC  181 (189)
Q Consensus       171 ~~L~~L~l~~c  181 (189)
                      ++|++|++++|
T Consensus       207 ~~L~~L~Ls~N  217 (440)
T 3zyj_A          207 IKLDELDLSGN  217 (440)
T ss_dssp             SSCCEEECTTS
T ss_pred             cccCEEECCCC
Confidence            34444444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.30  E-value=0.00022  Score=55.38  Aligned_cols=86  Identities=17%  Similarity=0.160  Sum_probs=49.7

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHH--hcCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALA--DGCR  171 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~--~~~~  171 (189)
                      +|+.|+++++. ++... ......+++|+.|+|+++ .++.-.... ...+++|++|+|+++ .++.-....+.  ..++
T Consensus        89 ~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~  163 (361)
T 2xot_A           89 NLRYLDLSSNH-LHTLD-EFLFSDLQALEVLLLYNN-HIVVVDRNA-FEDMAQLQKLYLSQN-QISRFPVELIKDGNKLP  163 (361)
T ss_dssp             TCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCSCCGGGTC----CT
T ss_pred             CCCEEECCCCc-CCcCC-HHHhCCCcCCCEEECCCC-cccEECHHH-hCCcccCCEEECCCC-cCCeeCHHHhcCcccCC
Confidence            48888888753 33211 112336788888888884 454321112 335788999999884 35432111111  3478


Q ss_pred             CCCeeecccCcCcC
Q psy9585         172 NLTHINISWCINIT  185 (189)
Q Consensus       172 ~L~~L~l~~c~~lt  185 (189)
                      +|++|+|+++ .++
T Consensus       164 ~L~~L~L~~N-~l~  176 (361)
T 2xot_A          164 KLMLLDLSSN-KLK  176 (361)
T ss_dssp             TCCEEECCSS-CCC
T ss_pred             cCCEEECCCC-CCC
Confidence            8999999887 454

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.27  E-value=0.0078  Score=42.32  Aligned_cols=83  Identities=16%  Similarity=0.204  Sum_probs=57.0

Q ss_pred             HcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHH-HHHHHh
Q psy9585          90 RCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQS-LKALAD  168 (189)
Q Consensus        90 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~-l~~l~~  168 (189)
                      ... +|+.|+++++. ++  .+......+++|+.|+++++ .++.  +..+. .+++|++|+|+++. +++-. +..+. 
T Consensus        68 ~l~-~L~~L~l~~n~-l~--~l~~~~~~~~~L~~L~L~~N-~l~~--l~~~~-~l~~L~~L~l~~N~-i~~~~~~~~l~-  137 (198)
T 1ds9_A           68 GME-NLRILSLGRNL-IK--KIENLDAVADTLEELWISYN-QIAS--LSGIE-KLVNLRVLYMSNNK-ITNWGEIDKLA-  137 (198)
T ss_dssp             HHT-TCCEEEEEEEE-EC--SCSSHHHHHHHCSEEEEEEE-ECCC--HHHHH-HHHHSSEEEESEEE-CCCHHHHHHHT-
T ss_pred             cCC-CCCEEECCCCC-cc--cccchhhcCCcCCEEECcCC-cCCc--CCccc-cCCCCCEEECCCCc-CCchhHHHHHh-
Confidence            345 49999998853 33  12233345689999999996 5654  33433 47899999999954 66533 34444 


Q ss_pred             cCCCCCeeecccCc
Q psy9585         169 GCRNLTHINISWCI  182 (189)
Q Consensus       169 ~~~~L~~L~l~~c~  182 (189)
                      .+++|++|++++|.
T Consensus       138 ~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          138 ALDKLEDLLLAGNP  151 (198)
T ss_dssp             TTTTCSEEEECSCH
T ss_pred             cCCCCCEEEecCCc
Confidence            58999999999984

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=96.27  E-value=0.0011  Score=50.43  Aligned_cols=12  Identities=8%  Similarity=0.008  Sum_probs=7.1

Q ss_pred             CCCCCeeecccC
Q psy9585         170 CRNLTHINISWC  181 (189)
Q Consensus       170 ~~~L~~L~l~~c  181 (189)
                      +++|++|++++|
T Consensus       119 ~~~L~~L~l~~N  130 (317)
T 3o53_A          119 GQGKKNIYLANN  130 (317)
T ss_dssp             CSSCEEEECCSS
T ss_pred             cCCCCEEECCCC
Confidence            455666666665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=96.26  E-value=0.00012  Score=60.40  Aligned_cols=62  Identities=19%  Similarity=0.261  Sum_probs=34.7

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      .+++|++|+++++ .+++.........+++|++|+|++|. ++......+ .++++|++|++++|
T Consensus       446 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          446 GLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVF-DTLHRLQLLNMSHN  507 (606)
T ss_dssp             TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCc-CCccChhhh-cccccCCEEECCCC
Confidence            5566777777664 34332222223456778888887753 443222222 34677777777776

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.26  E-value=0.0015  Score=54.03  Aligned_cols=81  Identities=12%  Similarity=0.084  Sum_probs=58.1

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      .|+.|+++++ .++.  +.. ...+++|+.|+|+++ .++  .+..-...+++|++|+|++ ..++.  +.. ...+++|
T Consensus       442 ~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~-N~l~~--lp~-l~~l~~L  510 (567)
T 1dce_A          442 DVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASD-NALEN--VDG-VANLPRL  510 (567)
T ss_dssp             TCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCS-SCCCC--CGG-GTTCSSC
T ss_pred             CceEEEecCC-CCCC--CcC-ccccccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCC-CCCCC--Ccc-cCCCCCC
Confidence            4999999986 3332  233 447889999999995 565  2333345689999999999 44664  343 3458999


Q ss_pred             CeeecccCcCcCC
Q psy9585         174 THINISWCINITE  186 (189)
Q Consensus       174 ~~L~l~~c~~lt~  186 (189)
                      ++|+++++ .++.
T Consensus       511 ~~L~Ls~N-~l~~  522 (567)
T 1dce_A          511 QELLLCNN-RLQQ  522 (567)
T ss_dssp             CEEECCSS-CCCS
T ss_pred             cEEECCCC-CCCC
Confidence            99999998 5554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=96.26  E-value=0.00026  Score=56.35  Aligned_cols=37  Identities=30%  Similarity=0.422  Sum_probs=16.9

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      +++|++|+|+++..++.-... ...++++|++|++++|
T Consensus       159 l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          159 IPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             CTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTS
T ss_pred             CcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCC
Confidence            455555555544333211111 1223566666666665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=96.25  E-value=0.00078  Score=56.43  Aligned_cols=110  Identities=18%  Similarity=0.194  Sum_probs=64.8

Q ss_pred             CCcceeeccCCCC-CCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHc
Q psy9585          65 SNWSRIDLFNFQT-DVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH  143 (189)
Q Consensus        65 ~~~~~~~l~~~~~-~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~  143 (189)
                      ..++.++++.... .+....+    ..+. +|++|+++++. ++.... .....+++|++|+++++ .++.-. ......
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~----~~l~-~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~-~~~~~~   95 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANF----TRYS-QLTSLDVGFNT-ISKLEP-ELCQKLPMLKVLNLQHN-ELSQLS-DKTFAF   95 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGG----GGGT-TCSEEECCSSC-CCCCCT-THHHHCTTCCEEECCSS-CCCCCC-TTTTTT
T ss_pred             CCCcEEECCCCCCCCcCHHHH----hCCC-cCcEEECCCCc-cCccCH-HHHhcccCcCEEECCCC-ccCccC-hhhhcc
Confidence            4567777765421 1222222    2344 49999998853 332211 22347899999999985 444211 112345


Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcCC
Q psy9585         144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITE  186 (189)
Q Consensus       144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt~  186 (189)
                      +++|++|+|+++. ++......+ ..+++|++|++++| .++.
T Consensus        96 l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~  135 (680)
T 1ziw_A           96 CTNLTELHLMSNS-IQKIKNNPF-VKQKNLITLDLSHN-GLSS  135 (680)
T ss_dssp             CTTCSEEECCSSC-CCCCCSCTT-TTCTTCCEEECCSS-CCSC
T ss_pred             CCCCCEEECCCCc-cCccChhHc-cccCCCCEEECCCC-cccc
Confidence            8999999999854 442211222 35899999999998 4443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=96.24  E-value=0.00026  Score=56.81  Aligned_cols=82  Identities=15%  Similarity=0.100  Sum_probs=50.1

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|++|+++++ .++..... ....+++|++|+|+++ .++.-. ......+++|++|+|+++. ++...... ...+++|
T Consensus        57 ~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-~~~l~~L  130 (477)
T 2id5_A           57 HLEELELNEN-IVSAVEPG-AFNNLFNLRTLGLRSN-RLKLIP-LGVFTGLSNLTKLDISENK-IVILLDYM-FQDLYNL  130 (477)
T ss_dssp             TCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCCSCC-TTSSTTCTTCCEEECTTSC-CCEECTTT-TTTCTTC
T ss_pred             CCCEEECCCC-ccCEeChh-hhhCCccCCEEECCCC-cCCccC-cccccCCCCCCEEECCCCc-cccCChhH-ccccccC
Confidence            4888888875 33332111 2236788999998884 344211 1123457889999998844 44221122 3457899


Q ss_pred             CeeecccC
Q psy9585         174 THINISWC  181 (189)
Q Consensus       174 ~~L~l~~c  181 (189)
                      ++|+++++
T Consensus       131 ~~L~l~~n  138 (477)
T 2id5_A          131 KSLEVGDN  138 (477)
T ss_dssp             CEEEECCT
T ss_pred             CEEECCCC
Confidence            99999887

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.24  E-value=0.00052  Score=56.83  Aligned_cols=85  Identities=11%  Similarity=0.106  Sum_probs=45.1

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|+++++. ++... ......+++|+.|+|+++ .++. ....+...+++|++|+|+++. ++......+ ..+++|
T Consensus       100 ~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~-l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L  173 (597)
T 3oja_B          100 TIQKLYMGFNA-IRYLP-PHVFQNVPLLTVLVLERN-DLSS-LPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSL  173 (597)
T ss_dssp             TCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTC
T ss_pred             CCCEEECCCCc-CCCCC-HHHHcCCCCCCEEEeeCC-CCCC-CCHHHhccCCCCCEEEeeCCc-CCCCChhhh-hcCCcC
Confidence            37777776642 22211 112235677777777774 3441 111223456777777777743 432221222 346778


Q ss_pred             CeeecccCcCcC
Q psy9585         174 THINISWCINIT  185 (189)
Q Consensus       174 ~~L~l~~c~~lt  185 (189)
                      ++|++++| .++
T Consensus       174 ~~L~L~~N-~l~  184 (597)
T 3oja_B          174 QNLQLSSN-RLT  184 (597)
T ss_dssp             CEEECTTS-CCS
T ss_pred             cEEECcCC-CCC
Confidence            88888777 344

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=96.24  E-value=0.00025  Score=56.62  Aligned_cols=8  Identities=25%  Similarity=0.331  Sum_probs=3.9

Q ss_pred             ccEEeecC
Q psy9585          95 LRQISLRG  102 (189)
Q Consensus        95 L~~L~l~~  102 (189)
                      |+.|++++
T Consensus       101 L~~L~Ls~  108 (452)
T 3zyi_A          101 LEVLQLGR  108 (452)
T ss_dssp             CCEEECCS
T ss_pred             CCEEECCC
Confidence            44444444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.23  E-value=0.0033  Score=46.84  Aligned_cols=67  Identities=15%  Similarity=0.256  Sum_probs=47.1

Q ss_pred             HHHHHcCCCcceEecccCCCCCH-HHHHHHHHcCCCCCEEecCCCCCCCHH-HHHHHHhcCCCCCeeecccCc
Q psy9585         112 NILAQYCNNVEDINLNLCKKLTD-ATSLALSKHCAKLQRLDLASCSFITDQ-SLKALADGCRNLTHINISWCI  182 (189)
Q Consensus       112 ~~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~L~~L~L~~c~~i~~~-~l~~l~~~~~~L~~L~l~~c~  182 (189)
                      +.+...+++|+.|+|++ +.++. ..+..+...+++|+.|+|++ ..+++. .+..+. .. +|++|++.+++
T Consensus       163 ~i~~~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~-~l-~L~~L~L~~Np  231 (267)
T 3rw6_A          163 RIIEENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIK-GL-KLEELWLDGNS  231 (267)
T ss_dssp             HHHHHHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGT-TS-CCSEEECTTST
T ss_pred             HHHHhhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcc-cC-CcceEEccCCc
Confidence            44446789999999999 45654 23334455699999999998 667653 333332 23 89999999985

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.23  E-value=0.00028  Score=50.97  Aligned_cols=85  Identities=20%  Similarity=0.136  Sum_probs=52.4

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|.++++ .++..... ....+++|++|+|+++ .++. ....+...+++|++|+|+++ .++...... ...+++|
T Consensus        57 ~L~~L~Ls~N-~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~-l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L  130 (220)
T 2v9t_B           57 KLRRIDLSNN-QISELAPD-AFQGLRSLNSLVLYGN-KITE-LPKSLFEGLFSLQLLLLNAN-KINCLRVDA-FQDLHNL  130 (220)
T ss_dssp             TCCEEECCSS-CCCEECTT-TTTTCSSCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTC
T ss_pred             CCCEEECCCC-cCCCcCHH-HhhCCcCCCEEECCCC-cCCc-cCHhHccCCCCCCEEECCCC-CCCEeCHHH-cCCCCCC
Confidence            4899999885 33322111 2336788999999884 4542 11122345789999999884 354322222 2347889


Q ss_pred             CeeecccCcCcC
Q psy9585         174 THINISWCINIT  185 (189)
Q Consensus       174 ~~L~l~~c~~lt  185 (189)
                      ++|+++++ .++
T Consensus       131 ~~L~L~~N-~l~  141 (220)
T 2v9t_B          131 NLLSLYDN-KLQ  141 (220)
T ss_dssp             CEEECCSS-CCS
T ss_pred             CEEECCCC-cCC
Confidence            99999888 444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=96.22  E-value=0.0033  Score=54.55  Aligned_cols=83  Identities=13%  Similarity=0.164  Sum_probs=45.6

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCH-HHHHHHH------HcCCCCCEEecCCCCCCCHHHHHH-
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD-ATSLALS------KHCAKLQRLDLASCSFITDQSLKA-  165 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~------~~~~~L~~L~L~~c~~i~~~~l~~-  165 (189)
                      +|+.|.++++.....  +......+++|+.|+|+++..++. .....+.      ..+++|++|+|+++. ++  .+.. 
T Consensus       492 ~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~--~ip~~  566 (876)
T 4ecn_A          492 DLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LE--EFPAS  566 (876)
T ss_dssp             TCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CC--BCCCH
T ss_pred             CCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CC--ccCCh
Confidence            488888877532221  112233677788888877533554 2222221      234577777777743 54  2222 


Q ss_pred             -HHhcCCCCCeeecccC
Q psy9585         166 -LADGCRNLTHINISWC  181 (189)
Q Consensus       166 -l~~~~~~L~~L~l~~c  181 (189)
                       ....+++|++|++++|
T Consensus       567 ~~l~~L~~L~~L~Ls~N  583 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHN  583 (876)
T ss_dssp             HHHTTCTTCCEEECTTS
T ss_pred             hhhhcCCCCCEEECCCC
Confidence             2334677777777776

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=96.20  E-value=0.00025  Score=58.54  Aligned_cols=85  Identities=16%  Similarity=0.106  Sum_probs=53.2

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|++|+++++. +..... .....+++|++|+++++ .++...... ...+++|++|+|+++. ++......+ ..+++|
T Consensus        58 ~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-i~~l~~~~~-~~l~~L  131 (606)
T 3t6q_A           58 NLTFLDLTRCQ-IYWIHE-DTFQSQHRLDTLVLTAN-PLIFMAETA-LSGPKALKHLFFIQTG-ISSIDFIPL-HNQKTL  131 (606)
T ss_dssp             TCSEEECTTCC-CCEECT-TTTTTCTTCCEEECTTC-CCSEECTTT-TSSCTTCCEEECTTSC-CSCGGGSCC-TTCTTC
T ss_pred             cceEEECCCCc-cceeCh-hhccCccccCeeeCCCC-cccccChhh-hcccccccEeeccccC-cccCCcchh-ccCCcc
Confidence            48899998863 332111 12337889999999885 444221112 3458899999999854 554222222 458899


Q ss_pred             CeeecccCcCcC
Q psy9585         174 THINISWCINIT  185 (189)
Q Consensus       174 ~~L~l~~c~~lt  185 (189)
                      ++|++++| .++
T Consensus       132 ~~L~L~~n-~l~  142 (606)
T 3t6q_A          132 ESLYLGSN-HIS  142 (606)
T ss_dssp             CEEECCSS-CCC
T ss_pred             cEEECCCC-ccc
Confidence            99999998 444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=96.16  E-value=0.00031  Score=53.68  Aligned_cols=63  Identities=14%  Similarity=0.113  Sum_probs=32.4

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT  185 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt  185 (189)
                      .+++|+.|+++++ .++...... ...+++|++|+|+++. ++  .+..-...+++|++|+++++ .++
T Consensus       215 ~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~L~~L~l~~N-~l~  277 (332)
T 2ft3_A          215 RYSKLYRLGLGHN-QIRMIENGS-LSFLPTLRELHLDNNK-LS--RVPAGLPDLKLLQVVYLHTN-NIT  277 (332)
T ss_dssp             TCTTCSCCBCCSS-CCCCCCTTG-GGGCTTCCEEECCSSC-CC--BCCTTGGGCTTCCEEECCSS-CCC
T ss_pred             CCCCCCEEECCCC-cCCcCChhH-hhCCCCCCEEECCCCc-Ce--ecChhhhcCccCCEEECCCC-CCC
Confidence            4566777777663 333211111 2346677777777643 43  11111234667777777766 344

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=96.14  E-value=0.00032  Score=57.94  Aligned_cols=109  Identities=13%  Similarity=0.050  Sum_probs=66.4

Q ss_pred             CCcceeeccCCCC-CCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHc
Q psy9585          65 SNWSRIDLFNFQT-DVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH  143 (189)
Q Consensus        65 ~~~~~~~l~~~~~-~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~  143 (189)
                      ..++.++++.... .+....+    ..+. +|++|+++++. ++..... ....+++|++|+++++ .++.-.... ...
T Consensus        57 ~~L~~L~Ls~n~i~~~~~~~~----~~l~-~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~i~~l~~~~-~~~  127 (606)
T 3t6q_A           57 INLTFLDLTRCQIYWIHEDTF----QSQH-RLDTLVLTANP-LIFMAET-ALSGPKALKHLFFIQT-GISSIDFIP-LHN  127 (606)
T ss_dssp             TTCSEEECTTCCCCEECTTTT----TTCT-TCCEEECTTCC-CSEECTT-TTSSCTTCCEEECTTS-CCSCGGGSC-CTT
T ss_pred             ccceEEECCCCccceeChhhc----cCcc-ccCeeeCCCCc-ccccChh-hhcccccccEeecccc-CcccCCcch-hcc
Confidence            4567778765421 1111112    2344 49999999863 3322111 2337899999999995 455422222 345


Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585         144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT  185 (189)
Q Consensus       144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt  185 (189)
                      +++|++|+|+++. ++...+..+.. +++|++|+++++ .++
T Consensus       128 l~~L~~L~L~~n~-l~~~~~~~~~~-l~~L~~L~L~~n-~l~  166 (606)
T 3t6q_A          128 QKTLESLYLGSNH-ISSIKLPKGFP-TEKLKVLDFQNN-AIH  166 (606)
T ss_dssp             CTTCCEEECCSSC-CCCCCCCTTCC-CTTCCEEECCSS-CCC
T ss_pred             CCcccEEECCCCc-ccccCcccccC-CcccCEEEcccC-ccc
Confidence            8999999999954 54322233333 899999999998 444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=96.14  E-value=0.00027  Score=56.44  Aligned_cols=62  Identities=23%  Similarity=0.273  Sum_probs=29.3

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      .+++|++|+|+++ .++.-. ......+++|++|+|++|..++.-.... ..++++|++|++++|
T Consensus       145 ~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n  206 (452)
T 3zyi_A          145 YLSKLRELWLRNN-PIESIP-SYAFNRVPSLMRLDLGELKKLEYISEGA-FEGLFNLKYLNLGMC  206 (452)
T ss_dssp             SCTTCCEEECCSC-CCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTT-TTTCTTCCEEECTTS
T ss_pred             ccCCCCEEECCCC-CcceeC-HhHHhcCCcccEEeCCCCCCccccChhh-ccCCCCCCEEECCCC
Confidence            4556666666653 233111 1112235666666666554443211111 223566677776666

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=96.08  E-value=0.00052  Score=53.63  Aligned_cols=89  Identities=10%  Similarity=0.179  Sum_probs=56.1

Q ss_pred             HHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHh
Q psy9585          89 RRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALAD  168 (189)
Q Consensus        89 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~  168 (189)
                      ...+. |+.|+++++ .+++.... ....+++|++|+++++ .++.... .....+++|++|+|+++. ++.-. ..+..
T Consensus        66 ~~l~~-L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~l~-~~~~~  138 (390)
T 3o6n_A           66 DSFRQ-VELLNLNDL-QIEEIDTY-AFAYAHTIQKLYMGFN-AIRYLPP-HVFQNVPLLTVLVLERND-LSSLP-RGIFH  138 (390)
T ss_dssp             HHCCC-CSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCC-TTTTT
T ss_pred             ccccc-CcEEECCCC-cccccChh-hccCCCCcCEEECCCC-CCCcCCH-HHhcCCCCCCEEECCCCc-cCcCC-HHHhc
Confidence            34454 999999885 34332211 2236789999999985 4543221 223458999999999854 55211 12234


Q ss_pred             cCCCCCeeecccCcCcC
Q psy9585         169 GCRNLTHINISWCINIT  185 (189)
Q Consensus       169 ~~~~L~~L~l~~c~~lt  185 (189)
                      .+++|++|++++| .++
T Consensus       139 ~l~~L~~L~L~~n-~l~  154 (390)
T 3o6n_A          139 NTPKLTTLSMSNN-NLE  154 (390)
T ss_dssp             TCTTCCEEECCSS-CCC
T ss_pred             CCCCCcEEECCCC-ccC
Confidence            5889999999998 344

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=96.05  E-value=0.00025  Score=60.48  Aligned_cols=85  Identities=22%  Similarity=0.310  Sum_probs=38.2

Q ss_pred             CccEEeecCCCCCCHHHHH-HHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHH--HHhcC
Q psy9585          94 FLRQISLRGCQSMTDNSLN-ILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKA--LADGC  170 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~-~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~--l~~~~  170 (189)
                      +|++|+++++. ++..... .....+++|++|+++++. ++......+...+++|++|+|+++. +++.....  +..++
T Consensus       101 ~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l  177 (768)
T 3rgz_A          101 SLTSLDLSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGC  177 (768)
T ss_dssp             TCCEEECCSSE-EEEEGGGGGGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCC
T ss_pred             CCCEEECCCCc-CCCcCCChHHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhccC
Confidence            46777776642 2211111 022356777777777642 2211111111345666666666643 43222111  12335


Q ss_pred             CCCCeeecccC
Q psy9585         171 RNLTHINISWC  181 (189)
Q Consensus       171 ~~L~~L~l~~c  181 (189)
                      ++|++|++++|
T Consensus       178 ~~L~~L~Ls~n  188 (768)
T 3rgz_A          178 GELKHLAISGN  188 (768)
T ss_dssp             TTCCEEECCSS
T ss_pred             CCCCEEECCCC
Confidence            55555555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=96.04  E-value=0.00087  Score=54.98  Aligned_cols=12  Identities=17%  Similarity=0.274  Sum_probs=5.8

Q ss_pred             CCCCCeeecccC
Q psy9585         170 CRNLTHINISWC  181 (189)
Q Consensus       170 ~~~L~~L~l~~c  181 (189)
                      +++|++|+++++
T Consensus       472 l~~L~~L~L~~N  483 (562)
T 3a79_B          472 LQALQELNVASN  483 (562)
T ss_dssp             SCCCSEEECCSS
T ss_pred             CCCCCEEECCCC
Confidence            444555555444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=96.03  E-value=0.0002  Score=61.79  Aligned_cols=111  Identities=16%  Similarity=0.040  Sum_probs=63.9

Q ss_pred             CCCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHc
Q psy9585          64 GSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH  143 (189)
Q Consensus        64 ~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~  143 (189)
                      +..++.++++..  .++...... ..... +|+.|+++++.....-. ......+++|++|+|+++ .++...... ...
T Consensus        23 p~~l~~LdLs~N--~i~~i~~~~-~~~l~-~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls~N-~l~~~~p~~-~~~   95 (844)
T 3j0a_A           23 LNTTERLLLSFN--YIRTVTASS-FPFLE-QLQLLELGSQYTPLTID-KEAFRNLPNLRILDLGSS-KIYFLHPDA-FQG   95 (844)
T ss_dssp             CTTCCEEEEESC--CCCEECSSS-CSSCC-SCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECTTC-CCCEECTTS-SCS
T ss_pred             CCCcCEEECCCC--cCCccChhH-Ccccc-cCeEEeCCCCCCccccC-HHHhcCCCCCCEEECCCC-cCcccCHhH-ccC
Confidence            455677777643  222110000 12233 49999998864332211 112247889999999985 454322222 345


Q ss_pred             CCCCCEEecCCCCCCCHHHHHH-HHhcCCCCCeeecccCc
Q psy9585         144 CAKLQRLDLASCSFITDQSLKA-LADGCRNLTHINISWCI  182 (189)
Q Consensus       144 ~~~L~~L~L~~c~~i~~~~l~~-l~~~~~~L~~L~l~~c~  182 (189)
                      +++|++|+|++|. +++..+.. ....+++|++|++++|.
T Consensus        96 l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~  134 (844)
T 3j0a_A           96 LFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ  134 (844)
T ss_dssp             CSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred             CcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCc
Confidence            8999999999854 54322221 13458899999999983

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=95.96  E-value=0.001  Score=54.53  Aligned_cols=10  Identities=0%  Similarity=0.099  Sum_probs=5.3

Q ss_pred             CCCeeecccC
Q psy9585         172 NLTHINISWC  181 (189)
Q Consensus       172 ~L~~L~l~~c  181 (189)
                      +|++|++++|
T Consensus       451 ~L~~L~L~~N  460 (562)
T 3a79_B          451 KVKVLDLHNN  460 (562)
T ss_dssp             TCSEEECCSS
T ss_pred             cCCEEECCCC
Confidence            4555555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.94  E-value=0.00056  Score=55.33  Aligned_cols=13  Identities=15%  Similarity=0.164  Sum_probs=7.8

Q ss_pred             cCCCCCeeecccC
Q psy9585         169 GCRNLTHINISWC  181 (189)
Q Consensus       169 ~~~~L~~L~l~~c  181 (189)
                      .+++|+.|++++|
T Consensus       212 ~l~~L~~L~Ls~N  224 (487)
T 3oja_A          212 SAAGVTWISLRNN  224 (487)
T ss_dssp             GGTTCSEEECTTS
T ss_pred             CCCCccEEEecCC
Confidence            3556666666665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.94  E-value=0.00058  Score=56.56  Aligned_cols=79  Identities=16%  Similarity=0.183  Sum_probs=47.8

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|+++++ .++... ..+...+++|+.|+|+++ .++...... ...+++|++|+|+++. ++...    ...+++|
T Consensus       124 ~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~----~~~l~~L  194 (597)
T 3oja_B          124 LLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNN-NLERIEDDT-FQATTSLQNLQLSSNR-LTHVD----LSLIPSL  194 (597)
T ss_dssp             TCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECTTSC-CSBCC----GGGCTTC
T ss_pred             CCCEEEeeCC-CCCCCC-HHHhccCCCCCEEEeeCC-cCCCCChhh-hhcCCcCcEEECcCCC-CCCcC----hhhhhhh
Confidence            4888888886 333111 112346788888888885 444322112 3357888888888843 54322    2346778


Q ss_pred             CeeecccC
Q psy9585         174 THINISWC  181 (189)
Q Consensus       174 ~~L~l~~c  181 (189)
                      +.|+++++
T Consensus       195 ~~L~l~~n  202 (597)
T 3oja_B          195 FHANVSYN  202 (597)
T ss_dssp             SEEECCSS
T ss_pred             hhhhcccC
Confidence            88888776

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=95.94  E-value=0.00045  Score=52.02  Aligned_cols=61  Identities=21%  Similarity=0.250  Sum_probs=30.9

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      .+++|+.|+|+++ .++.- ...+...+++|++|+|+++ .++.-. ..+...+++|++|+++++
T Consensus       122 ~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          122 GLGELQELYLKGN-ELKTL-PPGLLTPTPKLEKLSLANN-NLTELP-AGLLNGLENLDTLLLQEN  182 (290)
T ss_dssp             TCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTS-CCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC-CCCcc-ChhhcccccCCCEEECCCC-cCCccC-HHHhcCcCCCCEEECCCC
Confidence            4566666666663 33321 1111234566777777663 343111 112234667777777776

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=95.93  E-value=0.00033  Score=54.38  Aligned_cols=85  Identities=18%  Similarity=0.063  Sum_probs=53.2

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|.++++ .++...-. ....+++|+.|+|+++ .++.-. ......+++|++|+|+++ .++...... ...+++|
T Consensus        65 ~L~~L~L~~N-~i~~i~~~-~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L  138 (361)
T 2xot_A           65 NLHSLLLSHN-HLNFISSE-AFVPVPNLRYLDLSSN-HLHTLD-EFLFSDLQALEVLLLYNN-HIVVVDRNA-FEDMAQL  138 (361)
T ss_dssp             TCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTC
T ss_pred             ccCEEECCCC-cCCccChh-hccCCCCCCEEECCCC-cCCcCC-HHHhCCCcCCCEEECCCC-cccEECHHH-hCCcccC
Confidence            4889999875 33322111 2236789999999884 454311 112345789999999984 455322222 3347899


Q ss_pred             CeeecccCcCcC
Q psy9585         174 THINISWCINIT  185 (189)
Q Consensus       174 ~~L~l~~c~~lt  185 (189)
                      ++|+++++ .++
T Consensus       139 ~~L~L~~N-~l~  149 (361)
T 2xot_A          139 QKLYLSQN-QIS  149 (361)
T ss_dssp             CEEECCSS-CCC
T ss_pred             CEEECCCC-cCC
Confidence            99999988 454

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=95.92  E-value=0.001  Score=56.49  Aligned_cols=83  Identities=23%  Similarity=0.161  Sum_probs=54.7

Q ss_pred             CCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q psy9585          93 GFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRN  172 (189)
Q Consensus        93 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~  172 (189)
                      .+|+.|+|+++.. ..  +..-...+++|++|+|+++ .++  .+..-...+++|++|+|+++. ++  .+..-...+++
T Consensus       224 ~~L~~L~Ls~n~l-~~--l~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~  294 (727)
T 4b8c_D          224 QLWHALDLSNLQI-FN--ISANIFKYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNR-LT--SLPAELGSCFQ  294 (727)
T ss_dssp             CCCCEEECTTSCC-SC--CCGGGGGCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSC-CS--SCCSSGGGGTT
T ss_pred             CCCcEEECCCCCC-CC--CChhhcCCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCc-CC--ccChhhcCCCC
Confidence            3599999988642 21  1111227889999999985 565  222223568999999999944 65  22222345899


Q ss_pred             CCeeecccCcCcC
Q psy9585         173 LTHINISWCINIT  185 (189)
Q Consensus       173 L~~L~l~~c~~lt  185 (189)
                      |++|+|++| .++
T Consensus       295 L~~L~L~~N-~l~  306 (727)
T 4b8c_D          295 LKYFYFFDN-MVT  306 (727)
T ss_dssp             CSEEECCSS-CCC
T ss_pred             CCEEECCCC-CCC
Confidence            999999998 454

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=95.91  E-value=0.00095  Score=55.88  Aligned_cols=109  Identities=17%  Similarity=0.206  Sum_probs=66.2

Q ss_pred             CCcceeeccCCCC-CCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHc
Q psy9585          65 SNWSRIDLFNFQT-DVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH  143 (189)
Q Consensus        65 ~~~~~~~l~~~~~-~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~  143 (189)
                      ..++.++++.... .+....+    ..+.. |+.|+++++. ++... ......+++|++|+++++ .++.-.... ...
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~----~~l~~-L~~L~L~~n~-l~~l~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~  119 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELC----QKLPM-LKVLNLQHNE-LSQLS-DKTFAFCTNLTELHLMSN-SIQKIKNNP-FVK  119 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHH----HHCTT-CCEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSS-CCCCCCSCT-TTT
T ss_pred             CcCcEEECCCCccCccCHHHH----hcccC-cCEEECCCCc-cCccC-hhhhccCCCCCEEECCCC-ccCccChhH-ccc
Confidence            4567888875421 1222222    34454 9999999863 33211 112337899999999985 343211112 345


Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585         144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT  185 (189)
Q Consensus       144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt  185 (189)
                      +++|++|+|+++. ++......+ ..+++|++|++++| .++
T Consensus       120 l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n-~l~  158 (680)
T 1ziw_A          120 QKNLITLDLSHNG-LSSTKLGTQ-VQLENLQELLLSNN-KIQ  158 (680)
T ss_dssp             CTTCCEEECCSSC-CSCCCCCSS-SCCTTCCEEECCSS-CCC
T ss_pred             cCCCCEEECCCCc-ccccCchhh-cccccCCEEEccCC-ccc
Confidence            8999999999964 443222222 35899999999998 344

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=95.88  E-value=0.0028  Score=55.02  Aligned_cols=81  Identities=15%  Similarity=0.169  Sum_probs=47.2

Q ss_pred             CccEEeecCCCCCCHHHHHH-HH------HcCCCcceEecccCCCCCHHHHHH--HHHcCCCCCEEecCCCCCCCHHHHH
Q psy9585          94 FLRQISLRGCQSMTDNSLNI-LA------QYCNNVEDINLNLCKKLTDATSLA--LSKHCAKLQRLDLASCSFITDQSLK  164 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~-l~------~~~~~L~~L~l~~~~~i~~~~~~~--l~~~~~~L~~L~L~~c~~i~~~~l~  164 (189)
                      +|+.|+++++..++...+.. +.      ..+++|+.|+|+++ .++  .+..  ....+++|++|+|+++. ++  .+.
T Consensus       516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~N~-l~--~lp  589 (876)
T 4ecn_A          516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFPASASLQKMVKLGLLDCVHNK-VR--HLE  589 (876)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCCCHHHHTTCTTCCEEECTTSC-CC--BCC
T ss_pred             CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccCChhhhhcCCCCCEEECCCCC-cc--cch
Confidence            48888888864355512221 21      23458888888874 454  2322  33457788888888743 54  222


Q ss_pred             HHHhcCCCCCeeecccC
Q psy9585         165 ALADGCRNLTHINISWC  181 (189)
Q Consensus       165 ~l~~~~~~L~~L~l~~c  181 (189)
                      . ...+++|++|++++|
T Consensus       590 ~-~~~L~~L~~L~Ls~N  605 (876)
T 4ecn_A          590 A-FGTNVKLTDLKLDYN  605 (876)
T ss_dssp             C-CCTTSEESEEECCSS
T ss_pred             h-hcCCCcceEEECcCC
Confidence            2 234567777777766

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=95.86  E-value=0.00054  Score=56.51  Aligned_cols=107  Identities=16%  Similarity=0.135  Sum_probs=64.7

Q ss_pred             CCcceeeccCCCC-CCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHc
Q psy9585          65 SNWSRIDLFNFQT-DVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKH  143 (189)
Q Consensus        65 ~~~~~~~l~~~~~-~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~  143 (189)
                      ..++.++++...- .+.+..+    .... +|++|+|+++. ++.-. ......+++|++|+++++ .++.-. ......
T Consensus        76 ~~L~~L~Ls~N~i~~i~~~~f----~~L~-~L~~L~Ls~N~-l~~l~-~~~f~~L~~L~~L~Ls~N-~l~~l~-~~~~~~  146 (635)
T 4g8a_A           76 PELQVLDLSRCEIQTIEDGAY----QSLS-HLSTLILTGNP-IQSLA-LGAFSGLSSLQKLVAVET-NLASLE-NFPIGH  146 (635)
T ss_dssp             TTCCEEECTTCCCCEECTTTT----TTCT-TCCEEECTTCC-CCEEC-GGGGTTCTTCCEEECTTS-CCCCST-TCCCTT
T ss_pred             CCCCEEECCCCcCCCcChhHh----cCCC-CCCEEEccCCc-CCCCC-HHHhcCCCCCCEEECCCC-cCCCCC-hhhhhc
Confidence            4567788875421 1222222    2234 49999999863 33211 112347889999999985 444211 111345


Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      +++|++|+|+++. ++...+......+++|++|+++++
T Consensus       147 L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          147 LKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             CTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CcccCeeccccCc-cccCCCchhhccchhhhhhcccCc
Confidence            8999999999843 543223334455889999999988

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.85  E-value=0.00077  Score=54.55  Aligned_cols=60  Identities=20%  Similarity=0.223  Sum_probs=29.0

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      .+++|+.|+|+++ .++......+...+++|++|+|+++. +++.  ..+. .+++|++|++++|
T Consensus       142 ~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~--~~~~-~l~~L~~L~Ls~N  201 (487)
T 3oja_A          142 CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV--KGQV-VFAKLKTLDLSSN  201 (487)
T ss_dssp             GGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE--ECCC-CCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-cccc--cccc-cCCCCCEEECCCC
Confidence            3455666666553 34433333333345666666666633 3321  1111 2566666666665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=95.85  E-value=0.00033  Score=60.40  Aligned_cols=37  Identities=27%  Similarity=0.244  Sum_probs=15.4

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         144 CAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       144 ~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      +++|++|+|+++. ++.........++++|++|+++++
T Consensus       122 L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          122 LKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             CSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             cCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCC
Confidence            4555555555532 322111111223455555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=95.84  E-value=0.0032  Score=52.57  Aligned_cols=91  Identities=15%  Similarity=0.139  Sum_probs=60.3

Q ss_pred             HcCCCccEEeecCCCCCCHH----------------HHHHHHH--cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEe
Q psy9585          90 RCGGFLRQISLRGCQSMTDN----------------SLNILAQ--YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLD  151 (189)
Q Consensus        90 ~~~~~L~~L~l~~~~~~~~~----------------~l~~l~~--~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~  151 (189)
                      ... +|++|+++++. ++..                .+.....  .+++|++|++++|. +... +......+++|++|+
T Consensus       204 ~l~-~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~  279 (636)
T 4eco_A          204 RLT-KLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-NLTK-LPTFLKALPEMQLIN  279 (636)
T ss_dssp             GCT-TCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-TCSS-CCTTTTTCSSCCEEE
T ss_pred             ccc-CCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-CCcc-ChHHHhcCCCCCEEE
Confidence            344 49999999964 5542                0222233  68899999999964 3321 122234589999999


Q ss_pred             cCCCCCCCH-HHHHHHHh-----cCCCCCeeecccCcCcC
Q psy9585         152 LASCSFITD-QSLKALAD-----GCRNLTHINISWCINIT  185 (189)
Q Consensus       152 L~~c~~i~~-~~l~~l~~-----~~~~L~~L~l~~c~~lt  185 (189)
                      |+++..++. .....+..     .+++|++|++++| .++
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~  318 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK  318 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC
Confidence            999655876 33333433     3589999999998 454

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=95.76  E-value=0.00066  Score=51.09  Aligned_cols=84  Identities=20%  Similarity=0.239  Sum_probs=51.3

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|+++++. ++  .+......+++|+.|+++++ .++.-.. .....+++|++|+|+++ .++.-. ......+++|
T Consensus        78 ~L~~L~Ls~N~-l~--~l~~~~~~l~~L~~L~l~~N-~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L  150 (290)
T 1p9a_G           78 VLGTLDLSHNQ-LQ--SLPLLGQTLPALTVLDVSFN-RLTSLPL-GALRGLGELQELYLKGN-ELKTLP-PGLLTPTPKL  150 (290)
T ss_dssp             TCCEEECCSSC-CS--SCCCCTTTCTTCCEEECCSS-CCCCCCS-STTTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTC
T ss_pred             cCCEEECCCCc-CC--cCchhhccCCCCCEEECCCC-cCcccCH-HHHcCCCCCCEEECCCC-CCCccC-hhhcccccCC
Confidence            48888888753 32  12222346788999999884 4542111 12345788999999884 354211 1123457889


Q ss_pred             CeeecccCcCcC
Q psy9585         174 THINISWCINIT  185 (189)
Q Consensus       174 ~~L~l~~c~~lt  185 (189)
                      ++|+++++ .++
T Consensus       151 ~~L~L~~N-~l~  161 (290)
T 1p9a_G          151 EKLSLANN-NLT  161 (290)
T ss_dssp             CEEECTTS-CCS
T ss_pred             CEEECCCC-cCC
Confidence            99999988 444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=95.58  E-value=0.00018  Score=52.35  Aligned_cols=106  Identities=14%  Similarity=0.055  Sum_probs=61.2

Q ss_pred             CCcceeeccCCC--CCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHH
Q psy9585          65 SNWSRIDLFNFQ--TDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSK  142 (189)
Q Consensus        65 ~~~~~~~l~~~~--~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~  142 (189)
                      ..++.++++...  ..+....+    ..++ +|++|.++++..++.... .....+++|+.|+++++ .++.  +.. ..
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f----~~l~-~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~L~l~~n-~l~~--lp~-~~  124 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSF----YNLS-KVTHIEIRNTRNLTYIDP-DALKELPLLKFLGIFNT-GLKM--FPD-LT  124 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTE----ESCT-TCCEEEEEEETTCCEECT-TSEECCTTCCEEEEEEE-CCCS--CCC-CT
T ss_pred             CCCcEEeCCCCCCcceeCHhHc----CCCc-CCcEEECCCCCCeeEcCH-HHhCCCCCCCEEeCCCC-CCcc--ccc-cc
Confidence            456777776442  11221111    2234 499999986334432211 12336789999999885 3442  222 34


Q ss_pred             cCCCCC---EEecCCCCCCCHHHHHHHHhcCCCCC-eeecccC
Q psy9585         143 HCAKLQ---RLDLASCSFITDQSLKALADGCRNLT-HINISWC  181 (189)
Q Consensus       143 ~~~~L~---~L~L~~c~~i~~~~l~~l~~~~~~L~-~L~l~~c  181 (189)
                      .+++|+   +|+++++..++.-.... ...+++|+ +|+++++
T Consensus       125 ~l~~L~~L~~L~l~~N~~l~~i~~~~-~~~l~~L~~~L~l~~n  166 (239)
T 2xwt_C          125 KVYSTDIFFILEITDNPYMTSIPVNA-FQGLCNETLTLKLYNN  166 (239)
T ss_dssp             TCCBCCSEEEEEEESCTTCCEECTTT-TTTTBSSEEEEECCSC
T ss_pred             cccccccccEEECCCCcchhhcCccc-ccchhcceeEEEcCCC
Confidence            577787   99999863454322122 23478999 9999887

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=95.54  E-value=0.0082  Score=48.09  Aligned_cols=100  Identities=17%  Similarity=0.139  Sum_probs=65.3

Q ss_pred             CCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcC
Q psy9585          65 SNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHC  144 (189)
Q Consensus        65 ~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~  144 (189)
                      ..++.++++...  +++.  .. ...+. +|++|+++++. ++...    ...+++|++|+++++ .++.-.    ...+
T Consensus        42 ~~L~~L~Ls~n~--l~~~--~~-l~~l~-~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N-~l~~~~----~~~l  105 (457)
T 3bz5_A           42 ATLTSLDCHNSS--ITDM--TG-IEKLT-GLTKLICTSNN-ITTLD----LSQNTNLTYLACDSN-KLTNLD----VTPL  105 (457)
T ss_dssp             TTCCEEECCSSC--CCCC--TT-GGGCT-TCSEEECCSSC-CSCCC----CTTCTTCSEEECCSS-CCSCCC----CTTC
T ss_pred             CCCCEEEccCCC--cccC--hh-hcccC-CCCEEEccCCc-CCeEc----cccCCCCCEEECcCC-CCceee----cCCC
Confidence            445677776542  2221  11 23344 49999999863 44321    347889999999985 455422    3458


Q ss_pred             CCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcCC
Q psy9585         145 AKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITE  186 (189)
Q Consensus       145 ~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt~  186 (189)
                      ++|++|+|+++. ++.-  .  ...+++|++|++++| .++.
T Consensus       106 ~~L~~L~L~~N~-l~~l--~--~~~l~~L~~L~l~~N-~l~~  141 (457)
T 3bz5_A          106 TKLTYLNCDTNK-LTKL--D--VSQNPLLTYLNCARN-TLTE  141 (457)
T ss_dssp             TTCCEEECCSSC-CSCC--C--CTTCTTCCEEECTTS-CCSC
T ss_pred             CcCCEEECCCCc-CCee--c--CCCCCcCCEEECCCC-ccce
Confidence            999999999954 5542  2  345899999999998 4543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=95.39  E-value=0.0065  Score=48.71  Aligned_cols=99  Identities=14%  Similarity=0.092  Sum_probs=65.7

Q ss_pred             CCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcC
Q psy9585          65 SNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHC  144 (189)
Q Consensus        65 ~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~  144 (189)
                      ..++.++++...  ++...    ..... +|+.|+++++. ++...    ...+++|++|+++++ .++.-  .  ...+
T Consensus        64 ~~L~~L~Ls~n~--l~~~~----~~~l~-~L~~L~Ls~N~-l~~~~----~~~l~~L~~L~L~~N-~l~~l--~--~~~l  126 (457)
T 3bz5_A           64 TGLTKLICTSNN--ITTLD----LSQNT-NLTYLACDSNK-LTNLD----VTPLTKLTYLNCDTN-KLTKL--D--VSQN  126 (457)
T ss_dssp             TTCSEEECCSSC--CSCCC----CTTCT-TCSEEECCSSC-CSCCC----CTTCTTCCEEECCSS-CCSCC--C--CTTC
T ss_pred             CCCCEEEccCCc--CCeEc----cccCC-CCCEEECcCCC-Cceee----cCCCCcCCEEECCCC-cCCee--c--CCCC
Confidence            456777776542  32211    12334 59999999864 43321    347899999999995 55542  1  4568


Q ss_pred             CCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585         145 AKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT  185 (189)
Q Consensus       145 ~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt  185 (189)
                      ++|++|+++++. ++.-  .  ...+++|++|++++|..++
T Consensus       127 ~~L~~L~l~~N~-l~~l--~--l~~l~~L~~L~l~~n~~~~  162 (457)
T 3bz5_A          127 PLLTYLNCARNT-LTEI--D--VSHNTQLTELDCHLNKKIT  162 (457)
T ss_dssp             TTCCEEECTTSC-CSCC--C--CTTCTTCCEEECTTCSCCC
T ss_pred             CcCCEEECCCCc-ccee--c--cccCCcCCEEECCCCCccc
Confidence            999999999854 5542  1  3458999999999986554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=95.36  E-value=0.0046  Score=46.91  Aligned_cols=89  Identities=17%  Similarity=0.194  Sum_probs=59.0

Q ss_pred             HHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHH
Q psy9585          82 PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQ  161 (189)
Q Consensus        82 ~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~  161 (189)
                      ..+..+.+.++ +|++|+++++ .++..... ....+++|+.|+++++ .++...  . ...+++|++|+|+++. ++. 
T Consensus        24 ~~~~~~~~~~~-~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~-   94 (317)
T 3o53_A           24 QALASLRQSAW-NVKELDLSGN-PLSQISAA-DLAPFTKLELLNLSSN-VLYETL--D-LESLSTLRTLDLNNNY-VQE-   94 (317)
T ss_dssp             HHHHHHHTTGG-GCSEEECTTS-CCCCCCHH-HHTTCTTCCEEECTTS-CCEEEE--E-ETTCTTCCEEECCSSE-EEE-
T ss_pred             hhHHHHhccCC-CCCEEECcCC-ccCcCCHH-HhhCCCcCCEEECCCC-cCCcch--h-hhhcCCCCEEECcCCc-ccc-
Confidence            34445544444 4999999986 44433222 2347899999999985 444211  1 4568999999999954 543 


Q ss_pred             HHHHHHhcCCCCCeeecccCcCcC
Q psy9585         162 SLKALADGCRNLTHINISWCINIT  185 (189)
Q Consensus       162 ~l~~l~~~~~~L~~L~l~~c~~lt  185 (189)
                          + ..+++|++|++++| .++
T Consensus        95 ----l-~~~~~L~~L~l~~n-~l~  112 (317)
T 3o53_A           95 ----L-LVGPSIETLHAANN-NIS  112 (317)
T ss_dssp             ----E-EECTTCCEEECCSS-CCS
T ss_pred             ----c-cCCCCcCEEECCCC-ccC
Confidence                1 13589999999998 444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=94.86  E-value=0.0035  Score=43.42  Aligned_cols=62  Identities=19%  Similarity=0.240  Sum_probs=42.4

Q ss_pred             CCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585         119 NNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT  185 (189)
Q Consensus       119 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt  185 (189)
                      ++|+.|+|++. .++.-. ......+++|++|+|++ ..++.-. ..+...+++|++|+++++ .++
T Consensus        33 ~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~-N~l~~i~-~~~~~~l~~L~~L~L~~N-~l~   94 (174)
T 2r9u_A           33 TDKQRLWLNNN-QITKLE-PGVFDHLVNLQQLYFNS-NKLTAIP-TGVFDKLTQLTQLDLNDN-HLK   94 (174)
T ss_dssp             TTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCTTCCEEECCSS-CCC
T ss_pred             CCCcEEEeCCC-CccccC-HHHhcCCcCCCEEECCC-CCCCccC-hhHhCCcchhhEEECCCC-ccc
Confidence            78999999984 555321 22234589999999999 4465311 122345899999999998 444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=94.79  E-value=0.002  Score=49.46  Aligned_cols=83  Identities=14%  Similarity=0.106  Sum_probs=46.4

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|.|++...++...- ..+..+++|+.|+|++. .++.-. ......+++|++|+|++ ..++.-. ..+.... +|
T Consensus        32 ~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~-N~l~~~~-~~~~~~~-~L  105 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRLNLSF-NALESLS-WKTVQGL-SL  105 (347)
T ss_dssp             CCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEEECCS-SCCSCCC-STTTCSC-CC
T ss_pred             CeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCC-ccceeC-HHHhcCCcCCCEEeCCC-CccceeC-HHHcccC-Cc
Confidence            388888875223332111 11236788888888884 555311 12234578888888887 4454211 1122222 38


Q ss_pred             CeeecccCc
Q psy9585         174 THINISWCI  182 (189)
Q Consensus       174 ~~L~l~~c~  182 (189)
                      +.|++.++.
T Consensus       106 ~~l~l~~N~  114 (347)
T 2ifg_A          106 QELVLSGNP  114 (347)
T ss_dssp             CEEECCSSC
T ss_pred             eEEEeeCCC
Confidence            888888763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=94.72  E-value=0.004  Score=42.87  Aligned_cols=81  Identities=15%  Similarity=0.162  Sum_probs=50.0

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT  174 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~  174 (189)
                      .+.|++++.. ++.  +..  .-.++|+.|+|++. .++.-. ......+++|++|+|++ ..++.-. ......+++|+
T Consensus        11 ~~~l~~s~n~-l~~--ip~--~~~~~l~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~Ls~-N~l~~l~-~~~f~~l~~L~   81 (170)
T 3g39_A           11 GTTVDCSGKS-LAS--VPT--GIPTTTQVLYLYDN-QITKLE-PGVFDRLTQLTRLDLDN-NQLTVLP-AGVFDKLTQLT   81 (170)
T ss_dssp             TTEEECTTSC-CSS--CCS--CCCTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCS-SCCCCCC-TTTTTTCTTCC
T ss_pred             CCEEEeCCCC-cCc--cCc--cCCCCCcEEEcCCC-cCCccC-hhhhcCcccCCEEECCC-CCcCccC-hhhccCCCCCC
Confidence            5677776642 221  110  12378999999984 555321 12234589999999999 4465321 12234589999


Q ss_pred             eeecccCcCcC
Q psy9585         175 HINISWCINIT  185 (189)
Q Consensus       175 ~L~l~~c~~lt  185 (189)
                      +|+++++ .++
T Consensus        82 ~L~L~~N-~l~   91 (170)
T 3g39_A           82 QLSLNDN-QLK   91 (170)
T ss_dssp             EEECCSS-CCC
T ss_pred             EEECCCC-ccC
Confidence            9999998 454

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=94.61  E-value=0.0043  Score=47.55  Aligned_cols=67  Identities=12%  Similarity=0.102  Sum_probs=45.4

Q ss_pred             HHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585         115 AQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT  185 (189)
Q Consensus       115 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt  185 (189)
                      +..+++|+.|+|++...++.-.. .....+++|++|+|++ ..++...-. ...++++|++|+|+++ .++
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~-N~l~~~~~~-~~~~l~~L~~L~l~~N-~l~   93 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVK-SGLRFVAPD-AFHFTPRLSRLNLSFN-ALE   93 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCS-SCCCEECTT-GGGSCSCCCEEECCSS-CCS
T ss_pred             CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCC-CccceeCHH-HhcCCcCCCEEeCCCC-ccc
Confidence            44677899999986345553211 1234589999999999 456532222 3346899999999998 454

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=94.47  E-value=0.018  Score=48.03  Aligned_cols=74  Identities=16%  Similarity=0.110  Sum_probs=41.0

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|+++++ .++.     +...+++|+.|+++++ .++.  +   ...+++|++|+|+++ .++  .+..-...+++|
T Consensus       222 ~L~~L~Ls~N-~L~~-----lp~~l~~L~~L~Ls~N-~L~~--l---p~~~~~L~~L~Ls~N-~L~--~lp~~l~~l~~L  286 (622)
T 3g06_A          222 GLKELIVSGN-RLTS-----LPVLPSELKELMVSGN-RLTS--L---PMLPSGLLSLSVYRN-QLT--RLPESLIHLSSE  286 (622)
T ss_dssp             TCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCSC--C---CCCCTTCCEEECCSS-CCC--SCCGGGGGSCTT
T ss_pred             CCCEEEccCC-ccCc-----CCCCCCcCcEEECCCC-CCCc--C---CcccccCcEEeCCCC-CCC--cCCHHHhhcccc
Confidence            3566666554 2221     1134567777777764 3431  1   114677778888774 354  222223457888


Q ss_pred             CeeecccCc
Q psy9585         174 THINISWCI  182 (189)
Q Consensus       174 ~~L~l~~c~  182 (189)
                      +.|++++|+
T Consensus       287 ~~L~L~~N~  295 (622)
T 3g06_A          287 TTVNLEGNP  295 (622)
T ss_dssp             CEEECCSCC
T ss_pred             CEEEecCCC
Confidence            888888773

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=94.26  E-value=0.0024  Score=48.73  Aligned_cols=83  Identities=14%  Similarity=0.031  Sum_probs=46.5

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhc----
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADG----  169 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~----  169 (189)
                      +|+.|+++++ .++..... ....+++|+.|+++++ .++  .+..-...+++|++|+|+++ .++......+...    
T Consensus       218 ~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~--~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~  291 (332)
T 2ft3_A          218 KLYRLGLGHN-QIRMIENG-SLSFLPTLRELHLDNN-KLS--RVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGV  291 (332)
T ss_dssp             TCSCCBCCSS-CCCCCCTT-GGGGCTTCCEEECCSS-CCC--BCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCS
T ss_pred             CCCEEECCCC-cCCcCChh-HhhCCCCCCEEECCCC-cCe--ecChhhhcCccCCEEECCCC-CCCccChhHcccccccc
Confidence            3666666664 22221111 1236788888888875 444  22222345788888888873 3554333332221    


Q ss_pred             -CCCCCeeecccCc
Q psy9585         170 -CRNLTHINISWCI  182 (189)
Q Consensus       170 -~~~L~~L~l~~c~  182 (189)
                       .++|+.|++++++
T Consensus       292 ~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          292 KRAYYNGISLFNNP  305 (332)
T ss_dssp             SSCCBSEEECCSSS
T ss_pred             ccccccceEeecCc
Confidence             3567788887774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=94.14  E-value=0.0066  Score=46.13  Aligned_cols=37  Identities=19%  Similarity=0.205  Sum_probs=21.4

Q ss_pred             cCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         143 HCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       143 ~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      .+++|++|+|+++. +++.....+ ..+++|++|++++|
T Consensus       214 ~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~N  250 (330)
T 1xku_A          214 GLNNLAKLGLSFNS-ISAVDNGSL-ANTPHLRELHLNNN  250 (330)
T ss_dssp             TCTTCCEEECCSSC-CCEECTTTG-GGSTTCCEEECCSS
T ss_pred             CCCCCCEEECCCCc-CceeChhhc-cCCCCCCEEECCCC
Confidence            46677777777633 443222222 33677777777777

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=93.37  E-value=0.046  Score=45.66  Aligned_cols=11  Identities=18%  Similarity=0.181  Sum_probs=6.0

Q ss_pred             CCCCeeecccC
Q psy9585         171 RNLTHINISWC  181 (189)
Q Consensus       171 ~~L~~L~l~~c  181 (189)
                      ++|++|++++|
T Consensus       141 ~~L~~L~Ls~N  151 (622)
T 3g06_A          141 PGLQELSVSDN  151 (622)
T ss_dssp             TTCCEEECCSS
T ss_pred             CCCCEEECcCC
Confidence            45555555555

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=92.22  E-value=0.017  Score=43.92  Aligned_cols=91  Identities=18%  Similarity=0.228  Sum_probs=47.2

Q ss_pred             CCHHHHHHHHHHcCCCccEEeecCC--CCCCHHHHHHHHHcCCCcceEecccC-CCCCHHHHHHHHHcCCCCC-EEecCC
Q psy9585          79 VEGPVLENISRRCGGFLRQISLRGC--QSMTDNSLNILAQYCNNVEDINLNLC-KKLTDATSLALSKHCAKLQ-RLDLAS  154 (189)
Q Consensus        79 ~~~~~l~~l~~~~~~~L~~L~l~~~--~~~~~~~l~~l~~~~~~L~~L~l~~~-~~i~~~~~~~l~~~~~~L~-~L~L~~  154 (189)
                      +.......+...|.+ |++|++.++  ..+.+.+    ...|++|+++.|.+- ..+.+.+    +..|++|+ .|.|.+
T Consensus       213 l~~~~~~~l~~~~~~-L~~l~L~~n~i~~I~~~a----F~~~~~L~~l~l~~ni~~I~~~a----F~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          213 LDNADFKLIRDYMPN-LVSLDISKTNATTIPDFT----FAQKKYLLKIKLPHNLKTIGQRV----FSNCGRLAGTLELPA  283 (329)
T ss_dssp             CCHHHHHHHHHHCTT-CCEEECTTBCCCEECTTT----TTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEEECT
T ss_pred             ecHHHHHHHHHhcCC-CeEEECCCCCcceecHhh----hhCCCCCCEEECCcccceehHHH----hhCChhccEEEEEcc
Confidence            334444444445554 777777762  2222222    236777777777651 1122211    33477777 777765


Q ss_pred             CCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         155 CSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       155 c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                        .++.-+-.+ ..+|++|+.|++.+.
T Consensus       284 --~l~~I~~~a-F~~c~~L~~l~l~~n  307 (329)
T 3sb4_A          284 --SVTAIEFGA-FMGCDNLRYVLATGD  307 (329)
T ss_dssp             --TCCEECTTT-TTTCTTEEEEEECSS
T ss_pred             --cceEEchhh-hhCCccCCEEEeCCC
Confidence              232111122 335788888887544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=91.84  E-value=0.048  Score=45.03  Aligned_cols=29  Identities=14%  Similarity=0.148  Sum_probs=13.9

Q ss_pred             CcceEecccCCCCCHHHHHHHHHcCCCCCEEecCC
Q psy9585         120 NVEDINLNLCKKLTDATSLALSKHCAKLQRLDLAS  154 (189)
Q Consensus       120 ~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~  154 (189)
                      +|+.|+|+++ .++.  +..   .+++|++|+|++
T Consensus       121 ~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~  149 (571)
T 3cvr_A          121 SLKHLDVDNN-QLTM--LPE---LPALLEYINADN  149 (571)
T ss_dssp             TCCEEECCSS-CCSC--CCC---CCTTCCEEECCS
T ss_pred             CCCEEECCCC-cCCC--CCC---cCccccEEeCCC
Confidence            5666666553 3332  111   345555555555

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=91.69  E-value=0.05  Score=43.49  Aligned_cols=33  Identities=15%  Similarity=0.103  Sum_probs=15.5

Q ss_pred             CCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         145 AKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       145 ~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      ++|++|+++++. ++.  +.. ...+++|++|++++|
T Consensus       173 ~~L~~L~L~~n~-l~~--l~~-~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          173 PSLEFIAAGNNQ-LEE--LPE-LQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECCSS
T ss_pred             ccccEEECcCCc-CCc--Ccc-ccCCCCCCEEECCCC
Confidence            355555555532 322  112 223556666666655

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=91.41  E-value=0.043  Score=45.36  Aligned_cols=11  Identities=9%  Similarity=-0.055  Sum_probs=6.2

Q ss_pred             CCCcceEeccc
Q psy9585         118 CNNVEDINLNL  128 (189)
Q Consensus       118 ~~~L~~L~l~~  128 (189)
                      +++|+.|++++
T Consensus        99 l~~L~~L~Ls~  109 (571)
T 3cvr_A           99 PASLEYLDACD  109 (571)
T ss_dssp             CTTCCEEECCS
T ss_pred             cCCCCEEEccC
Confidence            45555555555

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=90.92  E-value=0.068  Score=42.71  Aligned_cols=12  Identities=25%  Similarity=-0.064  Sum_probs=6.5

Q ss_pred             CCCCCeeecccC
Q psy9585         170 CRNLTHINISWC  181 (189)
Q Consensus       170 ~~~L~~L~l~~c  181 (189)
                      +++|++|++++|
T Consensus       236 l~~L~~L~l~~N  247 (454)
T 1jl5_A          236 LPFLTTIYADNN  247 (454)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CCCCCEEECCCC
Confidence            455555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=90.36  E-value=0.11  Score=39.42  Aligned_cols=80  Identities=10%  Similarity=0.251  Sum_probs=50.5

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      ++..+.+.+  .+....+..+...|++|++++|.++ .++.-. ...+..|++|++|.|.+ . ++.-+-.+ ..+|++|
T Consensus       203 ~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~-~~aF~~~~~L~~l~l~~-n-i~~I~~~a-F~~~~~L  275 (329)
T 3sb4_A          203 DINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKT-NATTIP-DFTFAQKKYLLKIKLPH-N-LKTIGQRV-FSNCGRL  275 (329)
T ss_dssp             GCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTB-CCCEEC-TTTTTTCTTCCEEECCT-T-CCEECTTT-TTTCTTC
T ss_pred             ccceEEEee--eecHHHHHHHHHhcCCCeEEECCCC-Ccceec-HhhhhCCCCCCEEECCc-c-cceehHHH-hhCChhc
Confidence            466666766  3566667777767999999999873 233211 11244588999999976 2 33211122 3458889


Q ss_pred             C-eeeccc
Q psy9585         174 T-HINISW  180 (189)
Q Consensus       174 ~-~L~l~~  180 (189)
                      + .+.+.+
T Consensus       276 ~~~l~l~~  283 (329)
T 3sb4_A          276 AGTLELPA  283 (329)
T ss_dssp             CEEEEECT
T ss_pred             cEEEEEcc
Confidence            8 888865

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=89.50  E-value=0.0044  Score=47.74  Aligned_cols=85  Identities=11%  Similarity=0.002  Sum_probs=36.1

Q ss_pred             CCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q psy9585          93 GFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRN  172 (189)
Q Consensus        93 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~  172 (189)
                      .++++|++++. .++.-. ......+++|++|+|+++...+. .-......+++|+++.+.++..++.-.-. ....+++
T Consensus        30 ~~l~~L~Ls~N-~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~l~~~~N~l~~l~~~-~f~~l~~  105 (350)
T 4ay9_X           30 RNAIELRFVLT-KLRVIQ-KGAFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEKANNLLYINPE-AFQNLPN  105 (350)
T ss_dssp             TTCSEEEEESC-CCSEEC-TTSSTTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEEEEEEETTCCEECTT-SBCCCTT
T ss_pred             CCCCEEEccCC-cCCCcC-HHHHcCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhhhcccCCcccccCch-hhhhccc
Confidence            34777777664 332111 01123566777777776421110 00011223455554333322333311111 1233566


Q ss_pred             CCeeecccC
Q psy9585         173 LTHINISWC  181 (189)
Q Consensus       173 L~~L~l~~c  181 (189)
                      |++|+++++
T Consensus       106 L~~L~l~~n  114 (350)
T 4ay9_X          106 LQYLLISNT  114 (350)
T ss_dssp             CCEEEEEEE
T ss_pred             ccccccccc
Confidence            666666655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	189
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	4e-12
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	4e-12
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	5e-10
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 4e-12
 Identities = 17/57 (29%), Positives = 23/57 (40%)

Query: 28 KKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVL 84
           +    +   I SYLD  SLC    V K W  +  DG  W ++     +TD     L
Sbjct: 16 ARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGL 72

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (135), Expect = 4e-12
 Identities = 19/39 (48%), Positives = 22/39 (56%)

Query: 29 KLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNW 67
           LP ELLL IFS L +  L + + V K W  LA D S W
Sbjct: 3  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 5e-10
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 30 LPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTD 78
          LPKEL L + S+L+   L + AQ  + W ILA D   W          +
Sbjct: 22 LPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDE 70

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.5 bits (115), Expect = 1e-08
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 30  LPKELLLRIFSYLDVTSLCRCAQVSKAWN-ILALDGSNWSRIDLFNFQTDVEGPVLENIS 88
           LP E+ L+IF+YL    +     VS+ WN I+    S W ++ +      V      +++
Sbjct: 9   LPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENF--VSPKGFNSLN 66

Query: 89  RRCGGFLRQISLRGC 103
            +      ++S +  
Sbjct: 67  LKLSQKYPKLSQQDR 81

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.001
 Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 120 NVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADG---CRNLTHI 176
           +++ +++  C++L+DA    L     + Q + L  C  +T+   K ++        L  +
Sbjct: 3   DIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAEL 60

Query: 177 NISWCINITENG 188
           N+     + + G
Sbjct: 61  NLRSN-ELGDVG 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.7
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.66
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	99.05
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.99
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.99
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.94
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.92
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.89
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.8
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.75
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.75
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.71
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.55
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.23
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.09
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	96.91
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	96.8
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.78
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.66
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	96.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.57
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.55
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.55
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	96.18
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	96.08
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	95.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	95.77
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.47
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	95.36
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	95.21
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	94.79
d2ifga3	156	High affinity nerve growth factor receptor, N-term	94.74
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	94.67
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	93.52
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	93.27
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	93.25
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	92.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	91.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	90.56
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	90.06

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.3e-16  Score=119.40  Aligned_cols=156  Identities=22%  Similarity=0.348  Sum_probs=121.2

Q ss_pred             CCCHHHHHHHHhcCCh---hhhHHHhhhhHHHHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCC
Q psy9585          29 KLPKELLLRIFSYLDV---TSLCRCAQVSKAWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQS  105 (189)
Q Consensus        29 ~LP~~il~~I~~~L~~---~~~~~~~~v~~~w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~  105 (189)
                      .+.++.+..+++..+.   .++..+..-......+. ....++.++++++. .+++..+..+++.++. |++|++++|..
T Consensus        57 ~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~Ls~c~-~itd~~l~~l~~~~~~-L~~L~ls~c~~  133 (284)
T d2astb2          57 VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCS-GFSEFALQTLLSSCSR-LDELNLSWCFD  133 (284)
T ss_dssp             EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCB-SCCHHHHHHHHHHCTT-CCEEECCCCTT
T ss_pred             ccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHh-cCCCCcCccccccc-cccccccchhhHHHHh-ccccccccccc
Confidence            3567888888887643   22334422222334443 33568899987654 7888899999999886 99999999988


Q ss_pred             CCHHHHHHH-HHcCCCcceEecccC-CCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcC
Q psy9585         106 MTDNSLNIL-AQYCNNVEDINLNLC-KKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCIN  183 (189)
Q Consensus       106 ~~~~~l~~l-~~~~~~L~~L~l~~~-~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~  183 (189)
                      +++.++... ...+++|+.|++++| ..+++.++..+...||+|++|+|++|..+++.++..+.. ||+|++|++++|..
T Consensus       134 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~-~~~L~~L~L~~C~~  212 (284)
T d2astb2         134 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYD  212 (284)
T ss_dssp             CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTCTT
T ss_pred             cccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc-cCcCCEEECCCCCC
Confidence            998887654 445689999999986 468899999998889999999999999999988888875 89999999999988


Q ss_pred             cCCCC
Q psy9585         184 ITENG  188 (189)
Q Consensus       184 lt~~~  188 (189)
                      ++++|
T Consensus       213 i~~~~  217 (284)
T d2astb2         213 IIPET  217 (284)
T ss_dssp             CCGGG
T ss_pred             CChHH
Confidence            88764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.3e-16  Score=116.01  Aligned_cols=128  Identities=18%  Similarity=0.411  Sum_probs=102.5

Q ss_pred             HHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHH
Q psy9585          57 WNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDAT  136 (189)
Q Consensus        57 w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~  136 (189)
                      ...+......++.+++.++  .+++..+..+++ ++ +|++|++++|..+++.++..+...|++|++|++++|..+++++
T Consensus        63 l~~l~~~c~~L~~L~L~~~--~l~~~~~~~l~~-~~-~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~  138 (284)
T d2astb2          63 LHGILSQCSKLQNLSLEGL--RLSDPIVNTLAK-NS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH  138 (284)
T ss_dssp             HHHHHTTBCCCSEEECTTC--BCCHHHHHHHTT-CT-TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred             HHHHHHhCCCccccccccc--CCCcHHHHHHhc-CC-CCcCccccccccccccccchhhHHHHhcccccccccccccccc
Confidence            4444444456777777655  567777777654 44 4999999998889999998888899999999999998898888


Q ss_pred             HHHHH-HcCCCCCEEecCCCC-CCCHHHHHHHHhcCCCCCeeecccCcCcCCCC
Q psy9585         137 SLALS-KHCAKLQRLDLASCS-FITDQSLKALADGCRNLTHINISWCINITENG  188 (189)
Q Consensus       137 ~~~l~-~~~~~L~~L~L~~c~-~i~~~~l~~l~~~~~~L~~L~l~~c~~lt~~~  188 (189)
                      +.... ..+++|+.|++++|. .+++.++..++.+||+|++|++++|..+|+++
T Consensus       139 ~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~  192 (284)
T d2astb2         139 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC  192 (284)
T ss_dssp             HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred             chhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchh
Confidence            76544 456889999999874 68999999999999999999999998898764

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.9e-14  Score=74.75  Aligned_cols=41  Identities=46%  Similarity=0.673  Sum_probs=38.1

Q ss_pred             cCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCc
Q psy9585          27 NKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNW   67 (189)
Q Consensus        27 ~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~   67 (189)
                      |+.||+|++.+||+||+.+|+.++++|||+|++++.++.+|
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            67899999999999999999999999999999998877655

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=2.7e-11  Score=76.04  Aligned_cols=51  Identities=27%  Similarity=0.509  Sum_probs=45.2

Q ss_pred             hhhcCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhh-hCCCCcceeeccC
Q psy9585          24 ALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILA-LDGSNWSRIDLFN   74 (189)
Q Consensus        24 ~~~~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~-~~~~~~~~~~l~~   74 (189)
                      .+.+..||+|++.+||+||+..|+.++++||++|+.++ .++.+|+.+.+..
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~   54 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   54 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHT
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            46788999999999999999999999999999999986 5677899887653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.2e-09  Score=84.86  Aligned_cols=113  Identities=15%  Similarity=0.248  Sum_probs=91.4

Q ss_pred             cceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHH---HcCCCcceEecccCCCCCHHHHHHHHHc
Q psy9585          67 WSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILA---QYCNNVEDINLNLCKKLTDATSLALSKH  143 (189)
Q Consensus        67 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~i~~~~~~~l~~~  143 (189)
                      ++.+|++  +..+++..+..+...... ++.|.|.+| .+++.+++.++   ..+++|++|+|+++ .+++.++..+...
T Consensus         4 l~~ld~~--~~~i~~~~~~~l~~~l~~-l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~   78 (460)
T d1z7xw1           4 IQSLDIQ--CEELSDARWAELLPLLQQ-CQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEE--SCCCCHHHHHHHHHHHTT-CSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHT
T ss_pred             CCEEEee--CCcCChHHHHHHHHhCCC-CCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHH
Confidence            4667775  338888888888888876 999999998 68988876654   68999999999984 7999998888764


Q ss_pred             C----CCCCEEecCCCCCCCHHHHHHHHh---cCCCCCeeecccCcCcCC
Q psy9585         144 C----AKLQRLDLASCSFITDQSLKALAD---GCRNLTHINISWCINITE  186 (189)
Q Consensus       144 ~----~~L~~L~L~~c~~i~~~~l~~l~~---~~~~L~~L~l~~c~~lt~  186 (189)
                      +    ++|++|+|++|. +++.++..++.   .+++|++|+++++ .+++
T Consensus        79 l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N-~i~~  126 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDN-LLGD  126 (460)
T ss_dssp             TCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSS-BCHH
T ss_pred             HhcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccc-cchh
Confidence            3    579999999975 99887766643   5789999999998 4554

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5e-11  Score=75.05  Aligned_cols=49  Identities=35%  Similarity=0.518  Sum_probs=45.0

Q ss_pred             hhhhcCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceee
Q psy9585          23 EALINKKLPKELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRID   71 (189)
Q Consensus        23 ~~~~~~~LP~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~   71 (189)
                      ..+.+..||+||+.+||+||+..|+.+++.||++|+.++.++.+|+.+-
T Consensus        15 ~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~   63 (102)
T d2ovrb1          15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC   63 (102)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred             ccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            4678999999999999999999999999999999999998888887764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.94  E-value=9.4e-09  Score=70.10  Aligned_cols=123  Identities=15%  Similarity=0.196  Sum_probs=87.6

Q ss_pred             HHHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHHcC--CCccEEeecCCCCCCHHHHHHH---HHcCCCcceEecccCC
Q psy9585          56 AWNILALDGSNWSRIDLFNFQTDVEGPVLENISRRCG--GFLRQISLRGCQSMTDNSLNIL---AQYCNNVEDINLNLCK  130 (189)
Q Consensus        56 ~w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~--~~L~~L~l~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~  130 (189)
                      ...++....+.++.+++++.. .++++.+..++....  .+|++|+++++ .+++.+...+   ...++.|++|+|++| 
T Consensus         6 ~l~~l~~n~~~L~~L~L~~~~-~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n-   82 (167)
T d1pgva_           6 CINRLREDDTDLKEVNINNMK-RVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-   82 (167)
T ss_dssp             HHHHHHTTCSSCCEEECTTCC-SSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-
T ss_pred             HHHHHHhCCCCCcEEEeCCCC-CCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehh-
Confidence            344555555678899987543 577777777765332  34999999986 6777765443   446789999999996 


Q ss_pred             CCCHHHHHHHHH---cCCCCCEEecCCC--CCCCHHHHHHHH---hcCCCCCeeecccC
Q psy9585         131 KLTDATSLALSK---HCAKLQRLDLASC--SFITDQSLKALA---DGCRNLTHINISWC  181 (189)
Q Consensus       131 ~i~~~~~~~l~~---~~~~L~~L~L~~c--~~i~~~~l~~l~---~~~~~L~~L~l~~c  181 (189)
                      .++++++..++.   ..+.|++|+|++.  ..+++++...|+   ..++.|++|+++..
T Consensus        83 ~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          83 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             hcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            799998888876   3477999999874  247777654444   44789999988765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.5e-09  Score=83.03  Aligned_cols=91  Identities=19%  Similarity=0.353  Sum_probs=79.1

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHH---HcCCCCCEEecCCCCCCCHHHHHHHHhcC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALS---KHCAKLQRLDLASCSFITDQSLKALADGC  170 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~---~~~~~L~~L~L~~c~~i~~~~l~~l~~~~  170 (189)
                      +|++|++++ ..+++..+..+...++++++|+|.+| .++++++..++   +.+++|++|+|++ ..|++.++..++...
T Consensus         3 ~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~-N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRS-NELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTT-CCCHHHHHHHHHHTT
T ss_pred             CCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcC-CcCChHHHHHHHHHH
Confidence            489999988 68999999999999999999999998 69998887776   5789999999999 469999999988653


Q ss_pred             ----CCCCeeecccCcCcCCCC
Q psy9585         171 ----RNLTHINISWCINITENG  188 (189)
Q Consensus       171 ----~~L~~L~l~~c~~lt~~~  188 (189)
                          ++|++|++++| .+|++|
T Consensus        80 ~~~~~~L~~L~L~~n-~it~~~  100 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNC-CLTGAG  100 (460)
T ss_dssp             CSTTCCCCEEECTTS-CCBGGG
T ss_pred             hcCCCCCCEEECCCC-Cccccc
Confidence                57999999999 688764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.89  E-value=1.6e-08  Score=68.72  Aligned_cols=122  Identities=16%  Similarity=0.234  Sum_probs=90.9

Q ss_pred             HHHhhhCCCCcceeeccCCCCCCCHHHHHHHHHHc--CCCccEEeecCCCCCCHHHHHHHH---HcCCCcceEecccCCC
Q psy9585          57 WNILALDGSNWSRIDLFNFQTDVEGPVLENISRRC--GGFLRQISLRGCQSMTDNSLNILA---QYCNNVEDINLNLCKK  131 (189)
Q Consensus        57 w~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~--~~~L~~L~l~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~  131 (189)
                      ...+....+.++++++.+.. .+++..+..+++..  ..+|++|+++++ .+++.++..++   ...+.|+.+.+.+| .
T Consensus         9 l~~~~~~~~~L~~L~L~~~~-~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~   85 (166)
T d1io0a_           9 LKRIQNNDPDLEEVNLNNIM-NIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-F   85 (166)
T ss_dssp             HHHHHTTCTTCCEEECTTCT-TCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-C
T ss_pred             HHHHHhcCCCCcEEEcCCCC-CCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccc-c
Confidence            34444444677889887543 68888888887732  235999999996 78888766543   46789999999985 6


Q ss_pred             CCHHHHHHHHH---cCCCCCEEecCCCC-CCCHHHHHHHHh---cCCCCCeeecccC
Q psy9585         132 LTDATSLALSK---HCAKLQRLDLASCS-FITDQSLKALAD---GCRNLTHINISWC  181 (189)
Q Consensus       132 i~~~~~~~l~~---~~~~L~~L~L~~c~-~i~~~~l~~l~~---~~~~L~~L~l~~c  181 (189)
                      ++++++..+..   ..++|+.++|+.+. .+++++...|+.   .+++|++|++.+.
T Consensus        86 ~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          86 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             ccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            88888888775   56889988787543 688988666653   6899999999765

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4.6e-10  Score=72.42  Aligned_cols=50  Identities=32%  Similarity=0.535  Sum_probs=44.5

Q ss_pred             hhhcCCCC----HHHHHHHHhcCChhhhHHHhhhhHHHHHhhhCCCCcceeecc
Q psy9585          24 ALINKKLP----KELLLRIFSYLDVTSLCRCAQVSKAWNILALDGSNWSRIDLF   73 (189)
Q Consensus        24 ~~~~~~LP----~~il~~I~~~L~~~~~~~~~~v~~~w~~~~~~~~~~~~~~l~   73 (189)
                      .+.+..||    +||+.+||+||+..|+.++++||++|+.++.++.+|+.+...
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~   61 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER   61 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            35677777    699999999999999999999999999999999999987654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.75  E-value=7.8e-07  Score=60.08  Aligned_cols=104  Identities=19%  Similarity=0.264  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHH---cCCCcceEecccCCCCCHHHHHHHHH---cCCCCCEEecCC
Q psy9585          81 GPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQ---YCNNVEDINLNLCKKLTDATSLALSK---HCAKLQRLDLAS  154 (189)
Q Consensus        81 ~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~L~~  154 (189)
                      ++.+..+....+. |++|++++...+++.++..++.   .+++|++|++++| .++++++..++.   ..+.|+.|++.+
T Consensus         6 ~~~l~~~~~~~~~-L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~   83 (166)
T d1io0a_           6 EETLKRIQNNDPD-LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES   83 (166)
T ss_dssp             HHHHHHHHTTCTT-CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred             HHHHHHHHhcCCC-CcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhcc
Confidence            3456666666664 9999998877788888777664   5678999999986 788877776654   568899999988


Q ss_pred             CCCCCHHHHHHHHh---cCCCCCeeecccCc-CcCCC
Q psy9585         155 CSFITDQSLKALAD---GCRNLTHINISWCI-NITEN  187 (189)
Q Consensus       155 c~~i~~~~l~~l~~---~~~~L~~L~l~~c~-~lt~~  187 (189)
                      | .+++.++..++.   .+++|+.++|..|. .++++
T Consensus        84 ~-~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~  119 (166)
T d1io0a_          84 N-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNN  119 (166)
T ss_dssp             S-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             c-cccchhHHHHHHHHHhCccccEEeeccCCCcCcHH
Confidence            4 488888777664   45778877776542 45554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.75  E-value=4.5e-07  Score=61.46  Aligned_cols=97  Identities=13%  Similarity=0.283  Sum_probs=76.8

Q ss_pred             HHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHH---cCCCcceEecccCCCCCHHHHHHHHH---cCCCCCEEecCCC
Q psy9585          82 PVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQ---YCNNVEDINLNLCKKLTDATSLALSK---HCAKLQRLDLASC  155 (189)
Q Consensus        82 ~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~L~~c  155 (189)
                      +.++.+....+. |++|+++++..++++++..+..   .+++|++|+|++| .++++++..++.   ..+.|++|+|++|
T Consensus         5 ~~l~~l~~n~~~-L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n   82 (167)
T d1pgva_           5 SCINRLREDDTD-LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN   82 (167)
T ss_dssp             HHHHHHHTTCSS-CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHhCCCC-CcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehh
Confidence            557777777665 9999999877788888766543   5678999999995 688887766653   5789999999996


Q ss_pred             CCCCHHHHHHHHhcC---CCCCeeecccC
Q psy9585         156 SFITDQSLKALADGC---RNLTHINISWC  181 (189)
Q Consensus       156 ~~i~~~~l~~l~~~~---~~L~~L~l~~c  181 (189)
                       .+++.++..|+...   +.|++|+++++
T Consensus        83 -~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          83 -FLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             -BCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             -hcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence             59999988876554   67999999876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.71  E-value=3.6e-07  Score=68.78  Aligned_cols=115  Identities=17%  Similarity=0.238  Sum_probs=70.1

Q ss_pred             CcceeeccCCCCCCCHHHHHHH----HHHcCCCccEEeecCCCCCCHHHHHHH---HHcCCCcceEecccCCCCCHHHHH
Q psy9585          66 NWSRIDLFNFQTDVEGPVLENI----SRRCGGFLRQISLRGCQSMTDNSLNIL---AQYCNNVEDINLNLCKKLTDATSL  138 (189)
Q Consensus        66 ~~~~~~l~~~~~~~~~~~l~~l----~~~~~~~L~~L~l~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~i~~~~~~  138 (189)
                      .++.+++...  .+.+..+..+    ...++ +|+.|+++++ .+++.+...+   ...+++|++|+|++| .++++++.
T Consensus       187 ~L~~L~L~~n--~i~~~g~~~~l~~~l~~~~-~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n-~i~~~g~~  261 (344)
T d2ca6a1         187 LLHTVKMVQN--GIRPEGIEHLLLEGLAYCQ-ELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAA  261 (344)
T ss_dssp             TCCEEECCSS--CCCHHHHHHHHHTTGGGCT-TCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHH
T ss_pred             hhcccccccc--cccccccccchhhhhcchh-hhcccccccc-cccccccccccccccccccchhhhhhcC-ccCchhhH
Confidence            4455555433  4555443332    22333 3777777774 4666554433   346777888888875 57777776


Q ss_pred             HHHH-----cCCCCCEEecCCCCCCCHHHHHHHHh----cCCCCCeeecccCcCcCCC
Q psy9585         139 ALSK-----HCAKLQRLDLASCSFITDQSLKALAD----GCRNLTHINISWCINITEN  187 (189)
Q Consensus       139 ~l~~-----~~~~L~~L~L~~c~~i~~~~l~~l~~----~~~~L~~L~l~~c~~lt~~  187 (189)
                      .++.     ..+.|++|+|+++ .|+++++..+..    .+++|++|+++++ .++++
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N-~~~~~  317 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEE  317 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTT
T ss_pred             HHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCC-cCCCc
Confidence            6654     2356888888874 477777665543    4677888888776 45444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.51  E-value=4.5e-07  Score=68.21  Aligned_cols=116  Identities=16%  Similarity=0.250  Sum_probs=78.3

Q ss_pred             CCcceeeccCCCCCCCHHHHHHH---HHHcCCCccEEeecCCCCCCHHHHHH----HHHcCCCcceEecccCCCCCHHHH
Q psy9585          65 SNWSRIDLFNFQTDVEGPVLENI---SRRCGGFLRQISLRGCQSMTDNSLNI----LAQYCNNVEDINLNLCKKLTDATS  137 (189)
Q Consensus        65 ~~~~~~~l~~~~~~~~~~~l~~l---~~~~~~~L~~L~l~~~~~~~~~~l~~----l~~~~~~L~~L~l~~~~~i~~~~~  137 (189)
                      ..++.+.+...  .+.+..+..+   ...+. ++++|.++++ .+++.++..    ....+++|+.|+++++ .+++.+.
T Consensus       158 ~~L~~l~l~~n--~i~~~~~~~l~~~l~~~~-~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~  232 (344)
T d2ca6a1         158 PPLRSIICGRN--RLENGSMKEWAKTFQSHR-LLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGS  232 (344)
T ss_dssp             CCCCEEECCSS--CCTGGGHHHHHHHHHHCT-TCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHH
T ss_pred             cccceeecccc--cccccccccccchhhhhh-hhcccccccc-cccccccccchhhhhcchhhhcccccccc-ccccccc
Confidence            34445555432  3444333333   34445 4999999885 577765433    2346788999999884 6887776


Q ss_pred             HHHH---HcCCCCCEEecCCCCCCCHHHHHHHHhc-----CCCCCeeecccCcCcCCC
Q psy9585         138 LALS---KHCAKLQRLDLASCSFITDQSLKALADG-----CRNLTHINISWCINITEN  187 (189)
Q Consensus       138 ~~l~---~~~~~L~~L~L~~c~~i~~~~l~~l~~~-----~~~L~~L~l~~c~~lt~~  187 (189)
                      ..+.   ..+++|++|+|++|. +++.++..++..     .+.|++|++++| .++++
T Consensus       233 ~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~  288 (344)
T d2ca6a1         233 SALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELD  288 (344)
T ss_dssp             HHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHH
T ss_pred             ccccccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCC-cCChH
Confidence            6664   467899999999965 999888887643     356999999998 57654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=7.5e-06  Score=54.97  Aligned_cols=61  Identities=20%  Similarity=0.221  Sum_probs=26.3

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHH-HHHHHHhcCCCCCeeecccC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQ-SLKALADGCRNLTHINISWC  181 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~-~l~~l~~~~~~L~~L~l~~c  181 (189)
                      .+++|+.|+++++ .++.-. ..+...+++|++|+|+++. +++- .+..+. .+|+|++|++++|
T Consensus        61 ~l~~L~~L~ls~N-~i~~l~-~~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~-~l~~L~~L~l~~N  122 (162)
T d1a9na_          61 LLRRLKTLLVNNN-RICRIG-EGLDQALPDLTELILTNNS-LVELGDLDPLA-SLKSLTYLCILRN  122 (162)
T ss_dssp             CCSSCCEEECCSS-CCCEEC-SCHHHHCTTCCEEECCSCC-CCCGGGGGGGG-GCTTCCEEECCSS
T ss_pred             cCcchhhhhcccc-cccCCC-ccccccccccccceecccc-ccccccccccc-cccccchhhcCCC
Confidence            4455555555553 232100 1122235555555555532 3321 122222 3555555555555

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=4e-05  Score=51.23  Aligned_cols=88  Identities=17%  Similarity=0.224  Sum_probs=60.3

Q ss_pred             HHHHHHHcCCCccEEeecCCCCCCH-HHHHHHHHcCCCcceEecccCCCCCH-HHHHHHHHcCCCCCEEecCCCCCCC--
Q psy9585          84 LENISRRCGGFLRQISLRGCQSMTD-NSLNILAQYCNNVEDINLNLCKKLTD-ATSLALSKHCAKLQRLDLASCSFIT--  159 (189)
Q Consensus        84 l~~l~~~~~~~L~~L~l~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~L~~L~L~~c~~i~--  159 (189)
                      +..+.+.++. |+.|+++++ .+++ ..+......+++|+.|++++ ..+++ ..+..+  ....|++|++.+ ..++  
T Consensus        57 l~~~~~~~~~-L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l--~~~~L~~L~L~~-Npl~~~  130 (162)
T d1koha1          57 LRIIEENIPE-LLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKI--KGLKLEELWLDG-NSLSDT  130 (162)
T ss_dssp             HHHHHHHCTT-CCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHH--TTCCCSSCCCTT-STTSSS
T ss_pred             hHHHHHhCCC-CCEeeCCCc-cccCCchhHHHHhhCCccccccccc-Cccccchhhhhh--hccccceeecCC-CCcCcC
Confidence            3445556775 999999996 4443 33444556899999999999 45654 333332  356799999998 3343  


Q ss_pred             ----HHHHHHHHhcCCCCCeee
Q psy9585         160 ----DQSLKALADGCRNLTHIN  177 (189)
Q Consensus       160 ----~~~l~~l~~~~~~L~~L~  177 (189)
                          ......+...+|+|+.|+
T Consensus       131 ~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         131 FRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSSHHHHHHHHHTTSTTCCEET
T ss_pred             cccchhHHHHHHHHCCCCCEEC
Confidence                234667788899999986

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.23  E-value=3.1e-05  Score=49.40  Aligned_cols=82  Identities=15%  Similarity=0.216  Sum_probs=53.0

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHH-HHHHHHhcCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQ-SLKALADGCRN  172 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~-~l~~l~~~~~~  172 (189)
                      +|++|++++. .++.  +......+++|+.|++++ ..++.  +..+ ..+++|++|++++ ..+++- .+..+ ..+|+
T Consensus        21 ~L~~L~ls~N-~l~~--lp~~~~~l~~L~~L~l~~-N~i~~--l~~~-~~l~~L~~L~l~~-N~i~~~~~~~~l-~~~~~   91 (124)
T d1dcea3          21 LVTHLDLSHN-RLRA--LPPALAALRCLEVLQASD-NALEN--VDGV-ANLPRLQELLLCN-NRLQQSAAIQPL-VSCPR   91 (124)
T ss_dssp             TCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCS-SCCCC--CGGG-TTCSSCCEEECCS-SCCCSSSTTGGG-GGCTT
T ss_pred             CCCEEECCCC-ccCc--chhhhhhhhccccccccc-ccccc--cCcc-ccccccCeEECCC-CccCCCCCchhh-cCCCC
Confidence            3899999885 3332  211234688899999988 45553  2333 3588999999988 445532 23444 34889


Q ss_pred             CCeeecccCcCcC
Q psy9585         173 LTHINISWCINIT  185 (189)
Q Consensus       173 L~~L~l~~c~~lt  185 (189)
                      |+.|+++++ .++
T Consensus        92 L~~L~l~~N-~i~  103 (124)
T d1dcea3          92 LVLLNLQGN-SLC  103 (124)
T ss_dssp             CCEEECTTS-GGG
T ss_pred             CCEEECCCC-cCC
Confidence            999999887 344

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=3.5e-05  Score=51.55  Aligned_cols=82  Identities=15%  Similarity=0.168  Sum_probs=57.0

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      ++++|+++++. ++.-  +.+...+++|+.|+|+++ .++.  +.. ...+++|++|+|+++. ++.-. ..+...+|+|
T Consensus        19 ~lr~L~L~~n~-I~~i--~~~~~~l~~L~~L~Ls~N-~i~~--l~~-~~~l~~L~~L~ls~N~-i~~l~-~~~~~~l~~L   89 (162)
T d1a9na_          19 RDRELDLRGYK-IPVI--ENLGATLDQFDAIDFSDN-EIRK--LDG-FPLLRRLKTLLVNNNR-ICRIG-EGLDQALPDL   89 (162)
T ss_dssp             SCEEEECTTSC-CCSC--CCGGGGTTCCSEEECCSS-CCCE--ECC-CCCCSSCCEEECCSSC-CCEEC-SCHHHHCTTC
T ss_pred             cCcEEECCCCC-CCcc--CccccccccCCEEECCCC-CCCc--cCC-cccCcchhhhhccccc-ccCCC-cccccccccc
Confidence            48999999963 3321  234457899999999994 5653  222 3458999999999965 55321 1234558999


Q ss_pred             CeeecccCcCcC
Q psy9585         174 THINISWCINIT  185 (189)
Q Consensus       174 ~~L~l~~c~~lt  185 (189)
                      ++|++++| .++
T Consensus        90 ~~L~L~~N-~i~  100 (162)
T d1a9na_          90 TELILTNN-SLV  100 (162)
T ss_dssp             CEEECCSC-CCC
T ss_pred             ccceeccc-ccc
Confidence            99999998 454

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.91  E-value=0.00032  Score=48.95  Aligned_cols=57  Identities=18%  Similarity=0.232  Sum_probs=26.1

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      .+++|+.|.+.++. +++.  .. ...+++|++|+|+++ .+++  +..+ .++|+|++|++++|
T Consensus       149 ~~~~L~~L~l~~n~-~~~~--~~-l~~l~~L~~L~Ls~n-~l~~--l~~l-~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         149 GLTNLQYLSIGNAQ-VSDL--TP-LANLSKLTTLKADDN-KISD--ISPL-ASLPNLIEVHLKNN  205 (227)
T ss_dssp             GCTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEECCSS-CCCC--CGGG-GGCTTCCEEECTTS
T ss_pred             cccccccccccccc-cccc--hh-hcccccceecccCCC-ccCC--Chhh-cCCCCCCEEECcCC
Confidence            45555666555532 2211  11 223555666666553 2432  1222 23555666666555

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.80  E-value=0.00049  Score=48.00  Aligned_cols=75  Identities=15%  Similarity=0.145  Sum_probs=52.0

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|.+.++.......    ...+++|++|+++++ .+++  +.. ...+++|++|+|++| .+++  +.. ..++++|
T Consensus       152 ~L~~L~l~~n~~~~~~~----l~~l~~L~~L~Ls~n-~l~~--l~~-l~~l~~L~~L~Ls~N-~lt~--i~~-l~~l~~L  219 (227)
T d1h6ua2         152 NLQYLSIGNAQVSDLTP----LANLSKLTTLKADDN-KISD--ISP-LASLPNLIEVHLKNN-QISD--VSP-LANTSNL  219 (227)
T ss_dssp             TCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS-CCCC--CGG-GGGCTTCCEEECTTS-CCCB--CGG-GTTCTTC
T ss_pred             ccccccccccccccchh----hcccccceecccCCC-ccCC--Chh-hcCCCCCCEEECcCC-cCCC--Ccc-cccCCCC
Confidence            48888888764322222    347899999999986 5653  223 346899999999996 5764  222 3468999


Q ss_pred             Ceeeccc
Q psy9585         174 THINISW  180 (189)
Q Consensus       174 ~~L~l~~  180 (189)
                      +.|++++
T Consensus       220 ~~L~lsn  226 (227)
T d1h6ua2         220 FIVTLTN  226 (227)
T ss_dssp             CEEEEEE
T ss_pred             CEEEeeC
Confidence            9999874

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00033  Score=46.51  Aligned_cols=69  Identities=14%  Similarity=0.221  Sum_probs=49.3

Q ss_pred             HHHHHHHcCCCcceEecccCCCCCH-HHHHHHHHcCCCCCEEecCCCCCCCH-HHHHHHHhcCCCCCeeecccCc
Q psy9585         110 SLNILAQYCNNVEDINLNLCKKLTD-ATSLALSKHCAKLQRLDLASCSFITD-QSLKALADGCRNLTHINISWCI  182 (189)
Q Consensus       110 ~l~~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~L~~L~L~~c~~i~~-~~l~~l~~~~~~L~~L~l~~c~  182 (189)
                      .+..+...+++|++|+|+++ ++++ ..+......+++|+.|+|++ ..|++ ..+..+ . .++|+.|++++++
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l-~-~~~L~~L~L~~Np  126 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKI-K-GLKLEELWLDGNS  126 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHH-T-TCCCSSCCCTTST
T ss_pred             hhHHHHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCccccccccc-Cccccchhhhhh-h-ccccceeecCCCC
Confidence            34556678999999999994 5654 23444456699999999999 55665 334433 2 4679999999984

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.71  E-value=0.0013  Score=44.84  Aligned_cols=31  Identities=26%  Similarity=0.262  Sum_probs=14.8

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLC  129 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~  129 (189)
                      |+.|+++++ .+++..  . ...+++|+.|.++++
T Consensus        64 L~~L~Ls~N-~l~~~~--~-l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          64 LTQINFSNN-QLTDIT--P-LKNLTKLVDILMNNN   94 (199)
T ss_dssp             CCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSS
T ss_pred             cCcCccccc-cccCcc--c-ccCCccccccccccc
Confidence            666666654 232211  1 224555555555553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.66  E-value=0.00054  Score=47.31  Aligned_cols=84  Identities=24%  Similarity=0.256  Sum_probs=56.4

Q ss_pred             HHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHh
Q psy9585          89 RRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALAD  168 (189)
Q Consensus        89 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~  168 (189)
                      +.+++ |++|+++++ .+++-  ..+ ..+++|+.|+++++ .+++  +.. ...+++|+.|++.++. +++  +..+ .
T Consensus        65 ~~l~~-L~~L~L~~n-~i~~l--~~~-~~l~~L~~L~l~~n-~i~~--l~~-l~~l~~L~~L~l~~~~-~~~--~~~l-~  131 (210)
T d1h6ta2          65 QYLPN-VTKLFLNGN-KLTDI--KPL-ANLKNLGWLFLDEN-KVKD--LSS-LKDLKKLKSLSLEHNG-ISD--INGL-V  131 (210)
T ss_dssp             GGCTT-CCEEECCSS-CCCCC--GGG-TTCTTCCEEECCSS-CCCC--GGG-GTTCTTCCEEECTTSC-CCC--CGGG-G
T ss_pred             hhCCC-CCEEeCCCc-cccCc--ccc-ccCccccccccccc-cccc--ccc-cccccccccccccccc-ccc--cccc-c
Confidence            34554 999999986 44432  222 36889999999985 5653  333 3458999999999865 322  2233 3


Q ss_pred             cCCCCCeeecccCcCcCC
Q psy9585         169 GCRNLTHINISWCINITE  186 (189)
Q Consensus       169 ~~~~L~~L~l~~c~~lt~  186 (189)
                      .+++|+.++++++ .+++
T Consensus       132 ~l~~l~~l~~~~n-~l~~  148 (210)
T d1h6ta2         132 HLPQLESLYLGNN-KITD  148 (210)
T ss_dssp             GCTTCCEEECCSS-CCCC
T ss_pred             ccccccccccccc-cccc
Confidence            4789999999887 4554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.62  E-value=0.00051  Score=51.26  Aligned_cols=74  Identities=15%  Similarity=0.182  Sum_probs=36.5

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT  174 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~  174 (189)
                      ++.|+++++ .+++.  .. ...+++|++|++++| .+++  +..+ ..+++|++|+|+++ .+++  +.. ..++++|+
T Consensus       309 l~~L~ls~n-~l~~l--~~-l~~l~~L~~L~L~~n-~l~~--l~~l-~~l~~L~~L~l~~N-~l~~--l~~-l~~l~~L~  376 (384)
T d2omza2         309 LTYLTLYFN-NISDI--SP-VSSLTKLQRLFFANN-KVSD--VSSL-ANLTNINWLSAGHN-QISD--LTP-LANLTRIT  376 (384)
T ss_dssp             CSEEECCSS-CCSCC--GG-GGGCTTCCEEECCSS-CCCC--CGGG-GGCTTCCEEECCSS-CCCB--CGG-GTTCTTCS
T ss_pred             cCeEECCCC-CCCCC--cc-cccCCCCCEEECCCC-CCCC--ChhH-cCCCCCCEEECCCC-cCCC--Chh-hccCCCCC
Confidence            566666554 23221  11 235666666666664 3442  2222 23666666666653 3443  112 23456666


Q ss_pred             eeeccc
Q psy9585         175 HINISW  180 (189)
Q Consensus       175 ~L~l~~  180 (189)
                      .|+|++
T Consensus       377 ~L~L~~  382 (384)
T d2omza2         377 QLGLND  382 (384)
T ss_dssp             EEECCC
T ss_pred             EeeCCC
Confidence            666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.57  E-value=0.0012  Score=45.12  Aligned_cols=77  Identities=19%  Similarity=0.208  Sum_probs=49.8

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      ++++|.+.++ .+++  +.. ...+++|++|+++++ .+++  +.. ...+++|++|+++++....-   ..+ .++++|
T Consensus        41 ~l~~L~l~~~-~i~~--l~~-l~~l~nL~~L~Ls~N-~l~~--~~~-l~~l~~L~~L~l~~n~~~~~---~~l-~~l~~L  108 (199)
T d2omxa2          41 QVTTLQADRL-GIKS--IDG-VEYLNNLTQINFSNN-QLTD--ITP-LKNLTKLVDILMNNNQIADI---TPL-ANLTNL  108 (199)
T ss_dssp             TCCEEECTTS-CCCC--CTT-GGGCTTCCEEECCSS-CCCC--CGG-GTTCTTCCEEECCSSCCCCC---GGG-TTCTTC
T ss_pred             CCCEEECCCC-CCCC--ccc-cccCCCcCcCccccc-cccC--ccc-ccCCcccccccccccccccc---ccc-cccccc
Confidence            4999999886 3433  111 347899999999996 5654  223 34588999999988653221   122 346677


Q ss_pred             CeeecccCc
Q psy9585         174 THINISWCI  182 (189)
Q Consensus       174 ~~L~l~~c~  182 (189)
                      +.|++++|.
T Consensus       109 ~~L~l~~~~  117 (199)
T d2omxa2         109 TGLTLFNNQ  117 (199)
T ss_dssp             SEEECCSSC
T ss_pred             ccccccccc
Confidence            777776663

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.55  E-value=0.0002  Score=49.24  Aligned_cols=77  Identities=17%  Similarity=0.128  Sum_probs=47.5

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHH-HHHHHHHcCCCCCEEecCCCCCCCHH---------HH
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDA-TSLALSKHCAKLQRLDLASCSFITDQ---------SL  163 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~-~~~~l~~~~~~L~~L~L~~c~~i~~~---------~l  163 (189)
                      +|+.|.++++ .++.  +.. ...+++|+.|+++++ .+++- .+..+ ..+++|++|+|+++. ++..         ..
T Consensus        94 ~L~~L~l~~N-~i~~--l~~-~~~l~~L~~L~L~~N-~i~~~~~~~~l-~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~r  166 (198)
T d1m9la_          94 TLEELWISYN-QIAS--LSG-IEKLVNLRVLYMSNN-KITNWGEIDKL-AALDKLEDLLLAGNP-LYNDYKENNATSEYR  166 (198)
T ss_dssp             HCCEEECSEE-ECCC--HHH-HHHHHHSSEEEESEE-ECCCHHHHHHH-TTTTTCSEEEECSSH-HHHHHCTTTTHHHHH
T ss_pred             cccccccccc-cccc--ccc-ccccccccccccccc-hhccccccccc-cCCCccceeecCCCc-cccCcccccchhhHH
Confidence            3888888775 3443  222 235678999999884 55542 33443 458899999998842 3221         12


Q ss_pred             HHHHhcCCCCCeee
Q psy9585         164 KALADGCRNLTHIN  177 (189)
Q Consensus       164 ~~l~~~~~~L~~L~  177 (189)
                      ..+...+|+|+.|+
T Consensus       167 ~~vi~~lp~L~~LD  180 (198)
T d1m9la_         167 IEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHCSSCCEES
T ss_pred             HHHHHHCCCcCEeC
Confidence            23455689999887

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.55  E-value=4.1e-05  Score=52.47  Aligned_cols=83  Identities=16%  Similarity=0.159  Sum_probs=47.7

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|.+.+.. +.... .......++|++|+|++. .++.-.. ..+..+++|++|+|++ ..|+.-.-. .....++|
T Consensus        55 ~L~~L~L~~N~-i~~~~-~~~~~~~~~L~~L~Ls~N-~l~~l~~-~~F~~l~~L~~L~L~~-N~l~~i~~~-~f~~l~~L  128 (192)
T d1w8aa_          55 HLVKLELKRNQ-LTGIE-PNAFEGASHIQELQLGEN-KIKEISN-KMFLGLHQLKTLNLYD-NQISCVMPG-SFEHLNSL  128 (192)
T ss_dssp             TCCEEECCSSC-CCCBC-TTTTTTCTTCCEEECCSC-CCCEECS-SSSTTCTTCCEEECCS-SCCCEECTT-SSTTCTTC
T ss_pred             eEeeeeccccc-ccccc-ccccccccccceeeeccc-cccccCH-HHHhCCCcccccccCC-ccccccCHH-HhcCCccc
Confidence            48888887643 22111 112235678888888873 4442111 1234578888888888 445421111 23347888


Q ss_pred             CeeecccCc
Q psy9585         174 THINISWCI  182 (189)
Q Consensus       174 ~~L~l~~c~  182 (189)
                      ++|++++.+
T Consensus       129 ~~l~L~~N~  137 (192)
T d1w8aa_         129 TSLNLASNP  137 (192)
T ss_dssp             CEEECTTCC
T ss_pred             ccccccccc
Confidence            888888774

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.36  E-value=0.0051  Score=41.90  Aligned_cols=83  Identities=16%  Similarity=0.205  Sum_probs=56.3

Q ss_pred             HcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHH-HHHHHHh
Q psy9585          90 RCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQ-SLKALAD  168 (189)
Q Consensus        90 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~-~l~~l~~  168 (189)
                      .+.+ |+.|+++++. +++  +..+...+++|+.|+++++ .++.  +..+. .+++|++|+|+++ .+++- .+..+. 
T Consensus        68 ~l~~-L~~L~Ls~N~-i~~--i~~~~~~~~~L~~L~l~~N-~i~~--l~~~~-~l~~L~~L~L~~N-~i~~~~~~~~l~-  137 (198)
T d1m9la_          68 GMEN-LRILSLGRNL-IKK--IENLDAVADTLEELWISYN-QIAS--LSGIE-KLVNLRVLYMSNN-KITNWGEIDKLA-  137 (198)
T ss_dssp             HHTT-CCEEECCEEE-ECS--CSSHHHHHHHCCEEECSEE-ECCC--HHHHH-HHHHSSEEEESEE-ECCCHHHHHHHT-
T ss_pred             CCcc-ccChhhcccc-ccc--ccccccccccccccccccc-cccc--ccccc-ccccccccccccc-hhcccccccccc-
Confidence            3454 9999998863 332  1122234568999999985 5664  33333 4789999999984 46653 355554 


Q ss_pred             cCCCCCeeecccCc
Q psy9585         169 GCRNLTHINISWCI  182 (189)
Q Consensus       169 ~~~~L~~L~l~~c~  182 (189)
                      .+|+|+.|++++++
T Consensus       138 ~l~~L~~L~L~~N~  151 (198)
T d1m9la_         138 ALDKLEDLLLAGNP  151 (198)
T ss_dssp             TTTTCSEEEECSSH
T ss_pred             CCCccceeecCCCc
Confidence            59999999999874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.18  E-value=0.00072  Score=42.74  Aligned_cols=99  Identities=15%  Similarity=0.188  Sum_probs=60.9

Q ss_pred             CcceeeccCCCCCCCHHHHHHHHHHcCCCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCH-HHHHHHHHcC
Q psy9585          66 NWSRIDLFNFQTDVEGPVLENISRRCGGFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTD-ATSLALSKHC  144 (189)
Q Consensus        66 ~~~~~~l~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~  144 (189)
                      .++.++++..  .++.  +..-....+ +|+.|++++. .++.  +.. ...+++|+.|++++. .+++ ..+..+ ..+
T Consensus        21 ~L~~L~ls~N--~l~~--lp~~~~~l~-~L~~L~l~~N-~i~~--l~~-~~~l~~L~~L~l~~N-~i~~~~~~~~l-~~~   89 (124)
T d1dcea3          21 LVTHLDLSHN--RLRA--LPPALAALR-CLEVLQASDN-ALEN--VDG-VANLPRLQELLLCNN-RLQQSAAIQPL-VSC   89 (124)
T ss_dssp             TCCEEECCSS--CCCC--CCGGGGGCT-TCCEEECCSS-CCCC--CGG-GTTCSSCCEEECCSS-CCCSSSTTGGG-GGC
T ss_pred             CCCEEECCCC--ccCc--chhhhhhhh-cccccccccc-cccc--cCc-cccccccCeEECCCC-ccCCCCCchhh-cCC
Confidence            4567777644  2221  111112344 4999999985 4432  222 347899999999984 5553 223333 458


Q ss_pred             CCCCEEecCCCCCCCHH--HHHHHHhcCCCCCee
Q psy9585         145 AKLQRLDLASCSFITDQ--SLKALADGCRNLTHI  176 (189)
Q Consensus       145 ~~L~~L~L~~c~~i~~~--~l~~l~~~~~~L~~L  176 (189)
                      ++|++|++++ ..+++.  ....+...+|+|+.|
T Consensus        90 ~~L~~L~l~~-N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          90 PRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCEEECCC-CcCCcCccHHHHHHHHCcCcceE
Confidence            9999999998 445432  134456668998876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.08  E-value=0.0016  Score=48.43  Aligned_cols=63  Identities=21%  Similarity=0.294  Sum_probs=45.9

Q ss_pred             HHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcCC
Q psy9585         115 AQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITE  186 (189)
Q Consensus       115 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt~  186 (189)
                      ...+++++.|+++++ ++++  +.. ...+++|++|+|++| .+++  +..+ .++|+|++|++++| .+++
T Consensus       303 ~~~~~~l~~L~ls~n-~l~~--l~~-l~~l~~L~~L~L~~n-~l~~--l~~l-~~l~~L~~L~l~~N-~l~~  365 (384)
T d2omza2         303 ISNLKNLTYLTLYFN-NISD--ISP-VSSLTKLQRLFFANN-KVSD--VSSL-ANLTNINWLSAGHN-QISD  365 (384)
T ss_dssp             GGGCTTCSEEECCSS-CCSC--CGG-GGGCTTCCEEECCSS-CCCC--CGGG-GGCTTCCEEECCSS-CCCB
T ss_pred             cchhcccCeEECCCC-CCCC--Ccc-cccCCCCCEEECCCC-CCCC--ChhH-cCCCCCCEEECCCC-cCCC
Confidence            346788999999885 5554  222 356899999999996 4664  3344 45999999999998 5654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.91  E-value=5.9e-05  Score=51.64  Aligned_cols=12  Identities=17%  Similarity=0.116  Sum_probs=6.5

Q ss_pred             CCCCCeeecccC
Q psy9585         170 CRNLTHINISWC  181 (189)
Q Consensus       170 ~~~L~~L~l~~c  181 (189)
                      .++|++|+|+++
T Consensus       101 l~~L~~L~L~~N  112 (192)
T d1w8aa_         101 LHQLKTLNLYDN  112 (192)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CCcccccccCCc
Confidence            455555555554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=95.77  E-value=7.9e-05  Score=54.72  Aligned_cols=61  Identities=11%  Similarity=0.120  Sum_probs=28.3

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      .+++|++|+|+++ .+..... .....++.|++++++++. +....... ...+++|+.++++++
T Consensus        99 ~L~~L~~L~Ls~N-~l~~~~~-~~~~~~~~L~~l~l~~N~-~~~~~p~~-l~~l~~L~~l~l~~n  159 (313)
T d1ogqa_          99 KLTQLHYLYITHT-NVSGAIP-DFLSQIKTLVTLDFSYNA-LSGTLPPS-ISSLPNLVGITFDGN  159 (313)
T ss_dssp             GCTTCSEEEEEEE-CCEEECC-GGGGGCTTCCEEECCSSE-EESCCCGG-GGGCTTCCEEECCSS
T ss_pred             cccccchhhhccc-ccccccc-ccccchhhhccccccccc-ccccCchh-hccCcccceeecccc
Confidence            4556666666553 2221111 112335566666665532 11111112 234677777777766

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.00048  Score=45.43  Aligned_cols=83  Identities=14%  Similarity=0.117  Sum_probs=41.9

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      ++++|.+.+...++.-.... +...++|+.|+|++. +++.-.- ..+..+++|++|+|++ ..++.-... +.. ..+|
T Consensus        32 ~l~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~Ls~N-~l~~i~~-~~f~~l~~L~~L~Ls~-N~l~~l~~~-~~~-~~~l  105 (156)
T d2ifga3          32 NLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS-GLRFVAP-DAFHFTPRLSRLNLSF-NALESLSWK-TVQ-GLSL  105 (156)
T ss_dssp             CCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS-CCCEECT-TGGGSCSCCCEEECCS-SCCSCCCST-TTC-SCCC
T ss_pred             ccCeeecCCCccccccCchh-hccccccCcceeecc-ccCCccc-ccccccccccceeccC-CCCcccChh-hhc-cccc
Confidence            47777775543333221111 225677777777773 4442111 1234467777777777 334311111 111 3457


Q ss_pred             CeeecccCc
Q psy9585         174 THINISWCI  182 (189)
Q Consensus       174 ~~L~l~~c~  182 (189)
                      ++|+|++++
T Consensus       106 ~~L~L~~Np  114 (156)
T d2ifga3         106 QELVLSGNP  114 (156)
T ss_dssp             CEEECCSSC
T ss_pred             cccccCCCc
Confidence            777777653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.36  E-value=0.00086  Score=48.71  Aligned_cols=84  Identities=15%  Similarity=0.189  Sum_probs=41.4

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      ++++|++.++.. +... ......++.++.|.++++ .++.-... ....+++|++|+|+++. ++.- -..+ ..+++|
T Consensus       172 ~L~~L~l~~n~~-~~~~-~~~~~~~~~l~~L~~s~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-L~~l-p~~l-~~l~~L  244 (305)
T d1xkua_         172 SLTELHLDGNKI-TKVD-AASLKGLNNLAKLGLSFN-SISAVDNG-SLANTPHLRELHLNNNK-LVKV-PGGL-ADHKYI  244 (305)
T ss_dssp             TCSEEECTTSCC-CEEC-TGGGTTCTTCCEEECCSS-CCCEECTT-TGGGSTTCCEEECCSSC-CSSC-CTTT-TTCSSC
T ss_pred             ccCEEECCCCcC-CCCC-hhHhhccccccccccccc-cccccccc-cccccccceeeeccccc-cccc-cccc-ccccCC
Confidence            466666665321 1111 112235566777777664 34322111 22346777777777753 4311 0112 236777


Q ss_pred             CeeecccCcCcC
Q psy9585         174 THINISWCINIT  185 (189)
Q Consensus       174 ~~L~l~~c~~lt  185 (189)
                      ++|+++++ .++
T Consensus       245 ~~L~Ls~N-~i~  255 (305)
T d1xkua_         245 QVVYLHNN-NIS  255 (305)
T ss_dssp             CEEECCSS-CCC
T ss_pred             CEEECCCC-ccC
Confidence            77777776 344

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.21  E-value=0.01  Score=40.55  Aligned_cols=38  Identities=29%  Similarity=0.431  Sum_probs=22.2

Q ss_pred             cCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585         143 HCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT  185 (189)
Q Consensus       143 ~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt  185 (189)
                      .+++|++++++++. +++  +..+ .++++|++|++++| .++
T Consensus       154 ~l~~L~~l~l~~n~-l~~--i~~l-~~l~~L~~L~Ls~N-~i~  191 (210)
T d1h6ta2         154 RLTKLDTLSLEDNQ-ISD--IVPL-AGLTKLQNLYLSKN-HIS  191 (210)
T ss_dssp             GCTTCSEEECCSSC-CCC--CGGG-TTCTTCCEEECCSS-CCC
T ss_pred             cccccccccccccc-ccc--cccc-cCCCCCCEEECCCC-CCC
Confidence            35667777777643 432  2222 34677777777777 454

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.00087  Score=47.88  Aligned_cols=12  Identities=17%  Similarity=0.290  Sum_probs=6.3

Q ss_pred             cCCCcceEeccc
Q psy9585         117 YCNNVEDINLNL  128 (189)
Q Consensus       117 ~~~~L~~L~l~~  128 (189)
                      .+++|++|+|++
T Consensus        53 ~l~~L~~L~L~~   64 (266)
T d1p9ag_          53 PYTRLTQLNLDR   64 (266)
T ss_dssp             TCTTCCEEECTT
T ss_pred             cccccccccccc
Confidence            445555555555

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.0016  Score=42.75  Aligned_cols=65  Identities=12%  Similarity=0.123  Sum_probs=43.7

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINIT  185 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt  185 (189)
                      ..++|++|.+.+...++.-.... +..+++|+.|+|++ ..|+.-.-. ...++++|++|+|+++ .++
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~Ls~-N~l~~i~~~-~f~~l~~L~~L~Ls~N-~l~   93 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVK-SGLRFVAPD-AFHFTPRLSRLNLSFN-ALE   93 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCS-SCCCEECTT-GGGSCSCCCEEECCSS-CCS
T ss_pred             CccccCeeecCCCccccccCchh-hccccccCcceeec-cccCCcccc-cccccccccceeccCC-CCc
Confidence            56799999997644454322222 34589999999999 446532222 2445899999999998 444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.002  Score=46.31  Aligned_cols=83  Identities=13%  Similarity=0.095  Sum_probs=48.1

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      +|+.|++.++ .+..-.- .....+++|+.+.+.++ .++.-. ......+++|++|+++++ .++......+ ..+++|
T Consensus       154 ~L~~L~l~~N-~l~~l~~-~~f~~l~~L~~l~l~~N-~l~~i~-~~~f~~l~~L~~L~l~~N-~i~~~~~~~~-~~~~~L  227 (284)
T d1ozna_         154 NLTHLFLHGN-RISSVPE-RAFRGLHSLDRLLLHQN-RVAHVH-PHAFRDLGRLMTLYLFAN-NLSALPTEAL-APLRAL  227 (284)
T ss_dssp             TCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSS-CCSCCCHHHH-TTCTTC
T ss_pred             chhhcccccC-cccccch-hhhccccccchhhhhhc-cccccC-hhHhhhhhhccccccccc-cccccccccc-cccccc
Confidence            3777777764 3321111 12236677888888774 344211 122345788888888884 3543333333 458889


Q ss_pred             CeeecccCc
Q psy9585         174 THINISWCI  182 (189)
Q Consensus       174 ~~L~l~~c~  182 (189)
                      ++|++++++
T Consensus       228 ~~L~l~~N~  236 (284)
T d1ozna_         228 QYLRLNDNP  236 (284)
T ss_dssp             CEEECCSSC
T ss_pred             CEEEecCCC
Confidence            999998863

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=93.52  E-value=0.023  Score=41.09  Aligned_cols=57  Identities=19%  Similarity=0.315  Sum_probs=39.5

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccCcCcCC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWCINITE  186 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c~~lt~  186 (189)
                      .+++|++|++++| .++.     +....++|++|+|+++. ++.     +...+++|++|++++|+ ++.
T Consensus       282 ~~~~L~~L~Ls~N-~l~~-----lp~~~~~L~~L~L~~N~-L~~-----l~~~~~~L~~L~L~~N~-L~~  338 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIE-----LPALPPRLERLIASFNH-LAE-----VPELPQNLKQLHVEYNP-LRE  338 (353)
T ss_dssp             CCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSC-CSS
T ss_pred             cCCCCCEEECCCC-ccCc-----cccccCCCCEEECCCCc-CCc-----cccccCCCCEEECcCCc-CCC
Confidence            3578999999986 3442     22347899999998853 553     22335689999999984 653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=93.27  E-value=0.0011  Score=48.44  Aligned_cols=86  Identities=9%  Similarity=0.099  Sum_probs=56.0

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      ++++|++.++..-....+..-+..+++|++|+|++|..++...... ..++++|++|+|+++. ++..... ....+++|
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~-l~~~~~~-~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTN-VSGAIPD-FLSQIKTL  127 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEEC-CEEECCG-GGGGCTTC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhcccc-ccccccc-cccchhhh
Confidence            4999999985322211222233478999999999866554322223 3458999999999854 4322212 24457899


Q ss_pred             CeeecccCc
Q psy9585         174 THINISWCI  182 (189)
Q Consensus       174 ~~L~l~~c~  182 (189)
                      +.++++++.
T Consensus       128 ~~l~l~~N~  136 (313)
T d1ogqa_         128 VTLDFSYNA  136 (313)
T ss_dssp             CEEECCSSE
T ss_pred             ccccccccc
Confidence            999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=0.00073  Score=47.36  Aligned_cols=84  Identities=12%  Similarity=0.028  Sum_probs=45.7

Q ss_pred             CccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q psy9585          94 FLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNL  173 (189)
Q Consensus        94 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L  173 (189)
                      ++++|++++. .++.-.-. ....+++|++|+++++..... .-......++.+++|.+..+..++...... ..++++|
T Consensus        30 ~l~~L~Ls~n-~i~~l~~~-~f~~l~~L~~L~ls~n~~~~~-i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~-~~~l~~L  105 (242)
T d1xwdc1          30 NAIELRFVLT-KLRVIQKG-AFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEKANNLLYINPEA-FQNLPNL  105 (242)
T ss_dssp             CCSEEEEESC-CCCEECTT-TTTTCTTCCEEEEESCTTCCE-ECSSSEESCTTCCEEEEECCTTCCEECTTS-EECCTTC
T ss_pred             CCCEEECcCC-cCCccChh-Hhhccchhhhhhhccccccce-eecccccccccccccccccccccccccccc-ccccccc
Confidence            5888888774 33311101 123677888888877432211 001112346777777776655554322222 2447788


Q ss_pred             CeeecccC
Q psy9585         174 THINISWC  181 (189)
Q Consensus       174 ~~L~l~~c  181 (189)
                      ++|++.++
T Consensus       106 ~~l~l~~~  113 (242)
T d1xwdc1         106 QYLLISNT  113 (242)
T ss_dssp             CEEEEESC
T ss_pred             cccccchh
Confidence            88888776

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.94  E-value=0.0053  Score=43.61  Aligned_cols=57  Identities=16%  Similarity=0.144  Sum_probs=30.3

Q ss_pred             CCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         119 NNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       119 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      ++|+.|+|++ ..++.-.... ...+++|++|+|+++ .++.  +..+ ..+++|++|+++++
T Consensus        31 ~~l~~L~Ls~-N~i~~l~~~~-f~~l~~L~~L~L~~N-~l~~--l~~~-~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          31 KDTTILHLSE-NLLYTFSLAT-LMPYTRLTQLNLDRA-ELTK--LQVD-GTLPVLGTLDLSHN   87 (266)
T ss_dssp             TTCCEEECTT-SCCSEEEGGG-GTTCTTCCEEECTTS-CCCE--EECC-SCCTTCCEEECCSS
T ss_pred             cCCCEEECcC-CcCCCcCHHH-hhccccccccccccc-cccc--cccc-cccccccccccccc
Confidence            3677777776 3444211112 234677777777774 3442  1111 23566777777666

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.0051  Score=44.01  Aligned_cols=61  Identities=13%  Similarity=0.066  Sum_probs=31.7

Q ss_pred             cCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCCeeecccC
Q psy9585         117 YCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLTHINISWC  181 (189)
Q Consensus       117 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~~L~l~~c  181 (189)
                      .+++|+.|+++++ .++.-.. .....+++|+.+.++++. ++...-.. ..++++|++|+++++
T Consensus       151 ~~~~L~~L~l~~N-~l~~l~~-~~f~~l~~L~~l~l~~N~-l~~i~~~~-f~~l~~L~~L~l~~N  211 (284)
T d1ozna_         151 DLGNLTHLFLHGN-RISSVPE-RAFRGLHSLDRLLLHQNR-VAHVHPHA-FRDLGRLMTLYLFAN  211 (284)
T ss_dssp             TCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSS
T ss_pred             cccchhhcccccC-cccccch-hhhccccccchhhhhhcc-ccccChhH-hhhhhhccccccccc
Confidence            4556667766663 3332111 112346677777777633 43221122 234677777777776

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=90.56  E-value=0.042  Score=39.62  Aligned_cols=74  Identities=18%  Similarity=0.203  Sum_probs=42.3

Q ss_pred             CCccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q psy9585          93 GFLRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRN  172 (189)
Q Consensus        93 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~  172 (189)
                      ++|++|++++. .++.     +.....+|++|++.++ .++.     +..-.+.|++|+++++. ++.  +..+ ..+++
T Consensus        58 ~~L~~L~Ls~N-~l~~-----lp~~~~~L~~L~l~~n-~l~~-----l~~lp~~L~~L~L~~n~-l~~--lp~~-~~l~~  121 (353)
T d1jl5a_          58 PHLESLVASCN-SLTE-----LPELPQSLKSLLVDNN-NLKA-----LSDLPPLLEYLGVSNNQ-LEK--LPEL-QNSSF  121 (353)
T ss_dssp             TTCSEEECCSS-CCSS-----CCCCCTTCCEEECCSS-CCSC-----CCSCCTTCCEEECCSSC-CSS--CCCC-TTCTT
T ss_pred             CCCCEEECCCC-CCcc-----cccchhhhhhhhhhhc-ccch-----hhhhccccccccccccc-ccc--ccch-hhhcc
Confidence            35778877764 3331     1123457888887763 3331     11112468888888743 432  1222 34678


Q ss_pred             CCeeecccCc
Q psy9585         173 LTHINISWCI  182 (189)
Q Consensus       173 L~~L~l~~c~  182 (189)
                      |++|+++++.
T Consensus       122 L~~L~l~~~~  131 (353)
T d1jl5a_         122 LKIIDVDNNS  131 (353)
T ss_dssp             CCEEECCSSC
T ss_pred             ceeecccccc
Confidence            8888888773

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.06  E-value=0.023  Score=40.76  Aligned_cols=81  Identities=15%  Similarity=0.193  Sum_probs=46.8

Q ss_pred             ccEEeecCCCCCCHHHHHHHHHcCCCcceEecccCCCCCHHHHHHHHHcCCCCCEEecCCCCCCCHHHHHHHHhcCCCCC
Q psy9585          95 LRQISLRGCQSMTDNSLNILAQYCNNVEDINLNLCKKLTDATSLALSKHCAKLQRLDLASCSFITDQSLKALADGCRNLT  174 (189)
Q Consensus        95 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~L~~c~~i~~~~l~~l~~~~~~L~  174 (189)
                      |+.+.+.++. ++.  +.  ...+++|+.|++.++ ..+...... ...++.++.|+++++ .++...... ..++++|+
T Consensus       152 L~~l~l~~n~-l~~--l~--~~~~~~L~~L~l~~n-~~~~~~~~~-~~~~~~l~~L~~s~n-~l~~~~~~~-~~~l~~L~  222 (305)
T d1xkua_         152 LSYIRIADTN-ITT--IP--QGLPPSLTELHLDGN-KITKVDAAS-LKGLNNLAKLGLSFN-SISAVDNGS-LANTPHLR  222 (305)
T ss_dssp             CCEEECCSSC-CCS--CC--SSCCTTCSEEECTTS-CCCEECTGG-GTTCTTCCEEECCSS-CCCEECTTT-GGGSTTCC
T ss_pred             cCccccccCC-ccc--cC--cccCCccCEEECCCC-cCCCCChhH-hhccccccccccccc-ccccccccc-ccccccce
Confidence            6666666542 111  00  113567888888774 233222222 345788889988885 354322222 34589999


Q ss_pred             eeecccCcCcC
Q psy9585         175 HINISWCINIT  185 (189)
Q Consensus       175 ~L~l~~c~~lt  185 (189)
                      +|++++| .++
T Consensus       223 ~L~L~~N-~L~  232 (305)
T d1xkua_         223 ELHLNNN-KLV  232 (305)
T ss_dssp             EEECCSS-CCS
T ss_pred             eeecccc-ccc
Confidence            9999998 444