Psyllid ID: psy958


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
MLVPEYLGTRYSRSERFDDHFIEKCDKYLGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFTGISKWTNEKGARAVADSFPEYPCTAIKVKNKNPKAKMSTSTGIDQLLVRTQVEMFLNDSRLGNRGQQV
ccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHccccccEEEEcccccEEEcccEEEEEcccccHHHHHHHHHHHcccccEEEEEcccccccccccccccccEEEEEcccHHHHHHHHHHcccccc
ccccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccEEccccEEEcccccccHHHHHHHHHHHccccccEEEEccccccHHHHEEcccccEEEEEccHcHHccHHHHHcccccc
mlvpeylgtrysrserfddhFIEKCDKYLGNFIYVDTVRAIIKkelrppqvldiedeeakldgsdvLFTGISkwtnekgaravadsfpeypctaikvknknpkakmststgiDQLLVRTQVEMFlndsrlgnrgqqv
mlvpeylgtrysrserfddHFIEKCDKYLGNFIYVDTVRAIIKKElrppqvldiedeeakldgsdVLFTGISKWTNEKGARAVADSFPEYPCTAIkvknknpkakmststgidqllVRTQVEmflndsrlgnrgqqv
MLVPEYLGTRYSRSERFDDHFIEKCDKYLGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFTGISKWTNEKGARAVADSFPEYPCTAIKVKNKNPKAKMSTSTGIDQLLVRTQVEMFLNDSRLGNRGQQV
*********RYSRSERFDDHFIEKCDKYLGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFTGISKWTNEKGARAVADSFPEYPCTAIKV**************IDQLLVRTQVEMFL************
*LVPEYLGTRYSRSERFDDHFIEKCDKYLGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFTGISKWTNEKGARAVADSFPEYPCTAIKVKNKNPKAKMSTSTGIDQLLVRTQVEMF*************
MLVPEYLGTRYSRSERFDDHFIEKCDKYLGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFTGISKWTNEKGARAVADSFPEYPCTAIKVKNK********STGIDQLLVRTQVEMFLNDSR********
MLVP*YL**RYSRSERFDDHFIEKCDKYLGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFTGISKWTNEKGARAVADSFPEYPCTAIKVKNKNPKAKMSTSTGIDQLLVRTQVEMFLN*****N*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLVPEYLGTRYSRSERFDDHFIEKCDKYLGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFTGISKWTNEKGARAVADSFPEYPCTAIKVKNKNPKAKMSTSTGIDQLLVRTQVEMFLNDSRLGNRGQQV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query137 2.2.26 [Sep-21-2011]
O95865285 N(G),N(G)-dimethylarginin yes N/A 0.467 0.224 0.432 1e-07
Q6MG60285 N(G),N(G)-dimethylarginin yes N/A 0.467 0.224 0.418 3e-07
Q99LD8285 N(G),N(G)-dimethylarginin no N/A 0.467 0.224 0.418 3e-07
Q3SX44285 N(G),N(G)-dimethylarginin yes N/A 0.467 0.224 0.418 3e-07
O08557285 N(G),N(G)-dimethylarginin no N/A 0.357 0.171 0.418 6e-06
O94760285 N(G),N(G)-dimethylarginin no N/A 0.357 0.171 0.418 7e-06
Q9CWS0285 N(G),N(G)-dimethylarginin no N/A 0.357 0.171 0.418 7e-06
P56965285 N(G),N(G)-dimethylarginin no N/A 0.343 0.164 0.433 7e-06
>sp|O95865|DDAH2_HUMAN N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 OS=Homo sapiens GN=DDAH2 PE=1 SV=1 Back     alignment and function desciption
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 10/74 (13%)

Query: 35  VDTVR-AIIKKELRPPQVLDIEDEEAKLDGSDVLFTG------ISKWTNEKGARAVADSF 87
           VD VR A+    LR   +++I DE A LDG+DVLFTG      +SKWTN +GA  VAD+F
Sbjct: 100 VDGVRKALQDLGLR---IVEIGDENATLDGTDVLFTGREFFVGLSKWTNHRGAEIVADTF 156

Query: 88  PEYPCTAIKVKNKN 101
            ++  + + V   +
Sbjct: 157 RDFAVSTVPVSGPS 170




Hydrolyzes N(G),N(G)-dimethyl-L-arginine (ADMA) and N(G)-monomethyl-L-arginine (MMA) which act as inhibitors of NOS. Has therefore a role in the regulation of nitric oxide generation.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 5EC: .EC: 3EC: .EC: 1EC: 8
>sp|Q6MG60|DDAH2_RAT N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 OS=Rattus norvegicus GN=Ddah2 PE=1 SV=1 Back     alignment and function description
>sp|Q99LD8|DDAH2_MOUSE N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 OS=Mus musculus GN=Ddah2 PE=1 SV=1 Back     alignment and function description
>sp|Q3SX44|DDAH2_BOVIN N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 OS=Bos taurus GN=DDAH2 PE=2 SV=1 Back     alignment and function description
>sp|O08557|DDAH1_RAT N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Rattus norvegicus GN=Ddah1 PE=1 SV=3 Back     alignment and function description
>sp|O94760|DDAH1_HUMAN N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Homo sapiens GN=DDAH1 PE=1 SV=3 Back     alignment and function description
>sp|Q9CWS0|DDAH1_MOUSE N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Mus musculus GN=Ddah1 PE=1 SV=3 Back     alignment and function description
>sp|P56965|DDAH1_BOVIN N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Bos taurus GN=DDAH1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query137
157132288 270 ng,ng-dimethylarginine dimethylaminohydr 0.598 0.303 0.505 8e-15
312385254227 hypothetical protein AND_00970 [Anophele 0.598 0.361 0.528 1e-14
170040160 271 ng,ng-dimethylarginine dimethylaminohydr 0.598 0.302 0.494 2e-14
328707340 272 PREDICTED: N(G),N(G)-dimethylarginine di 0.591 0.297 0.511 2e-14
239789143 272 ACYPI002551 [Acyrthosiphon pisum] 0.591 0.297 0.511 3e-14
328726816 242 PREDICTED: N(G),N(G)-dimethylarginine di 0.591 0.334 0.511 3e-14
194764067 268 GF21405 [Drosophila ananassae] gi|190619 0.605 0.309 0.466 1e-11
91092842 317 PREDICTED: similar to ng,ng-dimethylargi 0.598 0.258 0.528 2e-11
270003073 269 hypothetical protein TcasGA2_TC000101 [T 0.598 0.304 0.528 2e-11
194895587 268 GG19510 [Drosophila erecta] gi|190649939 0.605 0.309 0.477 3e-11
>gi|157132288|ref|XP_001662541.1| ng,ng-dimethylarginine dimethylaminohydrolase [Aedes aegypti] gi|108871221|gb|EAT35446.1| AAEL012397-PA [Aedes aegypti] Back     alignment and taxonomy information
 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 57/89 (64%), Gaps = 7/89 (7%)

Query: 35  VDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFTG------ISKWTNEKGARAVADSFP 88
           VD VR++++KEL  P + +I D+ A+LDG DVLFTG      +SKWTNE GARAVA +FP
Sbjct: 88  VDAVRSVLRKELDLP-LAEIADQNARLDGGDVLFTGREFFVGLSKWTNEAGARAVASAFP 146

Query: 89  EYPCTAIKVKNKNPKAKMSTSTGIDQLLV 117
           EYPC  IKV   +      +  G D L V
Sbjct: 147 EYPCVPIKVTEHHHLKYYVSMAGNDVLCV 175




Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385254|gb|EFR29801.1| hypothetical protein AND_00970 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|170040160|ref|XP_001847877.1| ng,ng-dimethylarginine dimethylaminohydrolase [Culex quinquefasciatus] gi|167863736|gb|EDS27119.1| ng,ng-dimethylarginine dimethylaminohydrolase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|328707340|ref|XP_003243365.1| PREDICTED: N(G),N(G)-dimethylarginine dimethylaminohydrolase 1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|239789143|dbj|BAH71216.1| ACYPI002551 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328726816|ref|XP_001952486.2| PREDICTED: N(G),N(G)-dimethylarginine dimethylaminohydrolase 1-like, partial [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|194764067|ref|XP_001964153.1| GF21405 [Drosophila ananassae] gi|190619078|gb|EDV34602.1| GF21405 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|91092842|ref|XP_968480.1| PREDICTED: similar to ng,ng-dimethylarginine dimethylaminohydrolase [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270003073|gb|EEZ99520.1| hypothetical protein TcasGA2_TC000101 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|194895587|ref|XP_001978290.1| GG19510 [Drosophila erecta] gi|190649939|gb|EDV47217.1| GG19510 [Drosophila erecta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query137
FB|FBgn0030467268 CG1764 [Drosophila melanogaste 0.591 0.302 0.477 6e-13
UNIPROTKB|H0Y7N1188 DDAH2 "N(G),N(G)-dimethylargin 0.437 0.319 0.442 3.3e-08
UNIPROTKB|A3KGN5225 DDAH2 "N(G),N(G)-dimethylargin 0.437 0.266 0.442 5.3e-08
UNIPROTKB|Q5SSV3226 DDAH2 "N(G),N(G)-dimethylargin 0.437 0.265 0.442 5.4e-08
UNIPROTKB|Q5SRR8236 DDAH2 "N(G),N(G)-dimethylargin 0.437 0.254 0.442 6.4e-08
UNIPROTKB|O95865285 DDAH2 "N(G),N(G)-dimethylargin 0.437 0.210 0.442 1.1e-07
MGI|MGI:1859016285 Ddah2 "dimethylarginine dimeth 0.467 0.224 0.405 1.9e-07
UNIPROTKB|Q3SX44285 DDAH2 "N(G),N(G)-dimethylargin 0.437 0.210 0.428 2.4e-07
RGD|1302955285 Ddah2 "dimethylarginine dimeth 0.437 0.210 0.428 2.4e-07
UNIPROTKB|F1PBI2288 DDAH2 "Uncharacterized protein 0.452 0.215 0.416 3.2e-07
FB|FBgn0030467 CG1764 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 171 (65.3 bits), Expect = 6.0e-13, P = 6.0e-13
 Identities = 42/88 (47%), Positives = 55/88 (62%)

Query:    36 DTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFTG------ISKWTNEKGARAVADSFPE 89
             +++  I+KKEL  P V++IED  A+LDG DVLFTG      IS +TNE+GARAVA ++PE
Sbjct:    87 ESMAIILKKELDIP-VIEIEDPNAQLDGGDVLFTGREFFVGISSFTNEEGARAVAMAYPE 145

Query:    90 YPCTAIKVKNKNPKAKMSTSTGIDQLLV 117
             YP T I+V          T  G + L V
Sbjct:   146 YPVTPIRVNGTKRLKYYVTMAGPEVLCV 173




GO:0016403 "dimethylargininase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=IEA
UNIPROTKB|H0Y7N1 DDAH2 "N(G),N(G)-dimethylarginine dimethylaminohydrolase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A3KGN5 DDAH2 "N(G),N(G)-dimethylarginine dimethylaminohydrolase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5SSV3 DDAH2 "N(G),N(G)-dimethylarginine dimethylaminohydrolase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5SRR8 DDAH2 "N(G),N(G)-dimethylarginine dimethylaminohydrolase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O95865 DDAH2 "N(G),N(G)-dimethylarginine dimethylaminohydrolase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1859016 Ddah2 "dimethylarginine dimethylaminohydrolase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SX44 DDAH2 "N(G),N(G)-dimethylarginine dimethylaminohydrolase 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1302955 Ddah2 "dimethylarginine dimethylaminohydrolase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PBI2 DDAH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query137
pfam02274286 pfam02274, Amidinotransf, Amidinotransferase 6e-04
>gnl|CDD|216956 pfam02274, Amidinotransf, Amidinotransferase Back     alignment and domain information
 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 35  VDTVRAIIKKELRPPQ-VLDI---EDEEAKLDGSDVLFT-------GISKWTNEKGARAV 83
                 I+ K     Q VLDI   EDE A L+G D++         G+S+ T+E+G   +
Sbjct: 90  RRLDILILLKHPYKVQLVLDISELEDENAFLEGGDMVLDHKGVVAYGVSERTDEEGIEEL 149

Query: 84  ADSFPEYPCT 93
           A +    P  
Sbjct: 150 ARTLGYEPVA 159


This family contains glycine (EC:2.1.4.1) and inosamine (EC:2.1.4.2) amidinotransferases, enzymes involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, EC:3.5.3.6. These enzymes catalyze the reaction: arginine + H2O <=> citrulline + NH3. Also found in this family is the Streptococcus anti tumour glycoprotein. Length = 286

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 137
COG1834267 N-Dimethylarginine dimethylaminohydrolase [Amino a 99.78
PRK01388 406 arginine deiminase; Provisional 99.73
TIGR01078 405 arcA arginine deiminase. Arginine deiminase is the 99.7
PF02274281 Amidinotransf: Amidinotransferase; InterPro: IPR00 99.69
COG2235 409 ArcA Arginine deiminase [Amino acid transport and 99.03
PF04371329 PAD_porph: Porphyromonas-type peptidyl-arginine de 94.33
PRK13551362 agmatine deiminase; Provisional 90.48
TIGR03380357 agmatine_aguA agmatine deiminase. Members of this 86.42
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism] Back     alignment and domain information
Probab=99.78  E-value=3.8e-19  Score=148.32  Aligned_cols=103  Identities=13%  Similarity=0.113  Sum_probs=90.7

Q ss_pred             cccceeeeCcC-CCCcHHhHHHHHHHHHhccCCCceEEccCCCceeeC-CcEEee-------ecCccccHHHHHHHHHhC
Q psy958           17 FDDHFIEKCDK-YLGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDG-SDVLFT-------GISKWTNEKGARAVADSF   87 (137)
Q Consensus        17 ~~~~~~~~~~~-~~SR~gE~~~i~~~L~k~lg~~~i~~i~~p~gtlEG-GDVL~t-------GlS~RTN~eGa~~La~~f   87 (137)
                      +.+.-+++ .+ =++|+||...+++|++ ++|++ ++.+..+ +.+|| ||||++       |.|.|||.+|++||++.|
T Consensus        76 ~~~~avl~-r~~~p~R~gE~~~~~~~~~-~lgi~-i~~~~~~-~~~eG~GD~l~~~~~~v~iG~s~RTn~egi~~l~~~L  151 (267)
T COG1834          76 TGEGAVLA-RMGAPERRGEEEAIKETLE-SLGIP-IYPRVEA-GVFEGAGDVLMDGGDTVYIGYSFRTNLEGIEQLQAWL  151 (267)
T ss_pred             ecccEEEe-ccCChhhccCHHHHHHHHH-HcCCc-ccccccC-CCccccccEEEeCCcEEEEEeccccchHHHHHHHHHh
Confidence            34555555 44 5899999999999999 99999 8877764 89999 999988       999999999999999999


Q ss_pred             C-CCCeEEEeCC-CCCCCccccccccCCeEEEEcCchh
Q psy958           88 P-EYPCTAIKVK-NKNPKAKMSTSTGIDQLLVRTQVEM  123 (137)
Q Consensus        88 p-~y~V~~V~v~-~~LHLK~~vs~lg~~~llv~~~~~~  123 (137)
                      + +|.|+.+.++ .+|||||+|++++++++|++.+--.
T Consensus       152 ~~~~~v~~~~~~~~~lHLdt~~~~l~e~~al~y~~~~~  189 (267)
T COG1834         152 EEGYEVSLVRLDERYLHLDTVFNPLAEGLALAYPPAFS  189 (267)
T ss_pred             ccCcEEEEEecCCceeehhheeeeccCcceeecchhcc
Confidence            9 9999999997 5899999999999999999976443



>PRK01388 arginine deiminase; Provisional Back     alignment and domain information
>TIGR01078 arcA arginine deiminase Back     alignment and domain information
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively Back     alignment and domain information
>COG2235 ArcA Arginine deiminase [Amino acid transport and metabolism] Back     alignment and domain information
>PF04371 PAD_porph: Porphyromonas-type peptidyl-arginine deiminase; InterPro: IPR007466 Peptidyl-arginine deiminase (PAD) enzymes catalyse the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia Back     alignment and domain information
>PRK13551 agmatine deiminase; Provisional Back     alignment and domain information
>TIGR03380 agmatine_aguA agmatine deiminase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query137
2ci1_A276 Crystal Structure Of Dimethylarginine Dimethylamino 5e-07
3p8p_A308 Crystal Structure Of Human Dimethylarginine Dimethy 5e-07
3i2e_A308 Crystal Structure Of Human Dimethylarginine Dymethy 5e-07
2jaj_A289 Ddah1 Complexed With L-257 Length = 289 6e-07
2c6z_A284 Crystal Structure Of Dimethylarginine Dimethylamino 7e-07
2jai_A289 Ddah1 Complexed With Citrulline Length = 289 2e-06
>pdb|2CI1|A Chain A, Crystal Structure Of Dimethylarginine Dimethylaminohydrolase I In Complex With S-Nitroso- Lhomocysteine Length = 276 Back     alignment and structure

Iteration: 1

Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 6/53 (11%) Query: 51 VLDIEDEEAKLDGSDVLFTG------ISKWTNEKGARAVADSFPEYPCTAIKV 97 +++++DE A LDG DVLFTG +SK TN++GA +AD+F +Y + + V Sbjct: 109 IVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPV 161
>pdb|3P8P|A Chain A, Crystal Structure Of Human Dimethylarginine Dimethylaminohydrolase-1 (Ddah-1) Variant C274s Bound With N5-(1-Iminopentyl)-L-Ornithine Length = 308 Back     alignment and structure
>pdb|3I2E|A Chain A, Crystal Structure Of Human Dimethylarginine Dymethylaminohydrolase-1 (Ddah-1) Length = 308 Back     alignment and structure
>pdb|2JAJ|A Chain A, Ddah1 Complexed With L-257 Length = 289 Back     alignment and structure
>pdb|2C6Z|A Chain A, Crystal Structure Of Dimethylarginine Dimethylaminohydrolase I In Complex With Citrulline Length = 284 Back     alignment and structure
>pdb|2JAI|A Chain A, Ddah1 Complexed With Citrulline Length = 289 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query137
3i4a_A308 N(G),N(G)-dimethylarginine dimethylaminohydrolase 99.84
2ci1_A275 NG, NG-dimethylarginine dimethylaminohydrolase 1; 99.76
1h70_A255 NG, NG-dimethylarginine dimethylaminohydrolase; DD 99.76
1s9r_A 410 Arginine deiminase; hydrolase, 5-fold pseudo-symme 99.65
1bwd_A348 ADT, protein (inosamine-phosphate amidinotransfera 99.59
4e4j_A 433 Arginine deiminase; L-arginine, L-citrulline, NH3, 99.59
2a9g_A 418 Arginine deiminase; arginine degradation pathway, 99.57
1jdw_A423 L-arginine\:glycine amidinotransferase; creatine b 99.55
2ewo_A 377 Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, 97.81
2jer_A 389 Agmatine deiminase; hydrolase, tetramer, AGDI, 5- 97.53
1xkn_A 355 Putative peptidyl-arginine deiminase; alpha-beta p 97.35
1zbr_A 349 AAQ65385, conserved hypothetical protein; alpha-be 94.33
1xkn_A355 Putative peptidyl-arginine deiminase; alpha-beta p 93.13
1zbr_A349 AAQ65385, conserved hypothetical protein; alpha-be 92.1
2jer_A389 Agmatine deiminase; hydrolase, tetramer, AGDI, 5- 90.58
2ewo_A377 Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, 89.65
3hvm_A330 Agmatine deiminase; hydrolase; 2.10A {Helicobacter 88.43
3h7c_X383 Agmatine deiminase; structural genomics, protein s 83.05
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A* Back     alignment and structure
Probab=99.84  E-value=9.8e-21  Score=156.89  Aligned_cols=108  Identities=25%  Similarity=0.414  Sum_probs=96.2

Q ss_pred             ccccceeeeCcC-CCCcHHhHHHHHHHHHhccCCCceEEccCCCceeeCCcEEee------ecCccccHHHHHHHHHhCC
Q psy958           16 RFDDHFIEKCDK-YLGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFT------GISKWTNEKGARAVADSFP   88 (137)
Q Consensus        16 ~~~~~~~~~~~~-~~SR~gE~~~i~~~L~k~lg~~~i~~i~~p~gtlEGGDVL~t------GlS~RTN~eGa~~La~~fp   88 (137)
                      +..+..+++ ++ .++|++|...++++|+ ++|.+ +++++++++++||||||++      |+|.|||.+|+++|++.|+
T Consensus       106 vi~~~vii~-~m~~~~Rr~E~~~~~~~l~-~~g~~-i~~~~~~~~~lEGGDvl~~g~~v~vG~s~RTn~~gi~~l~~~l~  182 (308)
T 3i4a_A          106 VCEETALIT-RPGAPSRRKEVDMMKEALE-KLQLN-IVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFK  182 (308)
T ss_dssp             EETTEEEEC-CCSSGGGGGGHHHHHHHHH-TTTCE-EEECCCTTCCCCGGGEEECSSCEEEEESSSCCHHHHHHHHHHTT
T ss_pred             EECCEEEEe-CCCchhhhhhHHHHHHHHH-HCCCe-EEEccCCCCcCccceEEEECCEEEEEEchhcCHHHHHHHHHHcC
Confidence            345667777 66 8999999999999999 88988 9998854599999999987      9999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCccccccccCCeEEEEcCchhhhc
Q psy958           89 EYPCTAIKVKNKNPKAKMSTSTGIDQLLVRTQVEMFLN  126 (137)
Q Consensus        89 ~y~V~~V~v~~~LHLK~~vs~lg~~~llv~~~~~~~~~  126 (137)
                      +|+|+++++..++|||++|+++++++++++.+...+..
T Consensus       183 ~~~Vv~v~~~~~~HLDt~~~~l~~~~~lv~~~~~~~~~  220 (308)
T 3i4a_A          183 DYAVSTVPVADGLHLKSFCSMAGPNLIAIGSSESAQKA  220 (308)
T ss_dssp             TSCEEEEECCTTCCGGGSEEEEETTEEEEECSHHHHHH
T ss_pred             CCeEEEEECCCccChhheEEeeCCCEEEEECchhcHHH
Confidence            99999999999999999999999999999987655443



>2ci1_A NG, NG-dimethylarginine dimethylaminohydrolase 1; NOS regulation, S-nitrosylation, zinc, MMA, ADMA, acetylation, metal-binding; HET: KOR K1R CIT; 1.08A {Bos taurus} PDB: 2c6z_A* 2ci3_A 2ci4_A 2ci5_A* 2ci6_A 2ci7_A 2jaj_A* 2jai_A* Back     alignment and structure
>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} SCOP: d.126.1.3 PDB: 3rhy_A 3bpb_A* Back     alignment and structure
>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5- helix bundle domain, raction intermediate; HET: ARG; 1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A* Back     alignment and structure
>1bwd_A ADT, protein (inosamine-phosphate amidinotransferase); streptomycin; 3.10A {Streptomyces griseus} SCOP: d.126.1.2 Back     alignment and structure
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans} Back     alignment and structure
>2a9g_A Arginine deiminase; arginine degradation pathway, catalyti mechanism, hydrolase; HET: ARG; 2.30A {Pseudomonas aeruginosa} SCOP: d.126.1.4 PDB: 1rxx_A 2abr_A* 2aci_A 2aaf_A* Back     alignment and structure
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A Back     alignment and structure
>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural genomics, PSI, protein structure initiative; 2.90A {Streptococcus mutans} SCOP: d.126.1.6 Back     alignment and structure
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} SCOP: d.126.1.6 Back     alignment and structure
>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG, structural genomics, protein struc initiative, PSI; 1.60A {Chlorobium tepidum} SCOP: d.126.1.6 Back     alignment and structure
>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.60A {Porphyromonas gingivalis} SCOP: d.126.1.6 Back     alignment and structure
>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG, structural genomics, protein struc initiative, PSI; 1.60A {Chlorobium tepidum} SCOP: d.126.1.6 Back     alignment and structure
>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.60A {Porphyromonas gingivalis} SCOP: d.126.1.6 Back     alignment and structure
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} SCOP: d.126.1.6 Back     alignment and structure
>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural genomics, PSI, protein structure initiative; 2.90A {Streptococcus mutans} SCOP: d.126.1.6 Back     alignment and structure
>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori} SCOP: d.126.1.6 PDB: 2cmu_A Back     alignment and structure
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} SCOP: d.126.1.6 PDB: 1vkp_A* 2q3u_A* 3h7k_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query137
d1h70a_255 Dimethylarginine dimethylaminohydrolase DDAH {Pseu 99.67
d1s9ra_ 409 Arginine deiminase {Mycoplasma arginini [TaxId: 20 99.53
d1rxxa_ 412 Arginine deiminase {Pseudomonas aeruginosa [TaxId: 99.52
d1bwda_348 L-arginine: inosamine-phosphate amidinotransferase 99.31
d1jdwa_360 L-arginine: glycine amidinotransferase {Human (Hom 98.36
d1zbra1339 Putative peptidyl-arginine deiminase {Porphyromona 94.46
d1xkna_353 Putative peptidyl-arginine deiminase {Chlorobium t 91.7
d2jera1364 Agmatine iminohydrolase {Enterococcus faecalis [Ta 90.16
d2ewoa1369 Agmatine iminohydrolase {Streptococcus mutans [Tax 83.39
d2cmua1330 Putative peptidyl-arginine deiminase {Helicobacter 80.61
>d1h70a_ d.126.1.3 (A:) Dimethylarginine dimethylaminohydrolase DDAH {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Dimethylarginine dimethylaminohydrolase DDAH
domain: Dimethylarginine dimethylaminohydrolase DDAH
species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.67  E-value=7.1e-17  Score=124.77  Aligned_cols=102  Identities=15%  Similarity=0.155  Sum_probs=89.1

Q ss_pred             ccccceeeeCcC-CCCcHHhHHHHHHHHHhccCCCceEEccCCCceeeCCcEEee------ecCccccHHHHHHHHHhCC
Q psy958           16 RFDDHFIEKCDK-YLGNFIYVDTVRAIIKKELRPPQVLDIEDEEAKLDGSDVLFT------GISKWTNEKGARAVADSFP   88 (137)
Q Consensus        16 ~~~~~~~~~~~~-~~SR~gE~~~i~~~L~k~lg~~~i~~i~~p~gtlEGGDVL~t------GlS~RTN~eGa~~La~~fp   88 (137)
                      .+++.++++ ++ .++|++|...++.+++ +++.+.+..++.+ +++||||++++      |.|.|||.+|+++|++.|+
T Consensus        71 ~~~~~~i~~-~~~~~~R~~E~~~~~~~~~-~~~~~~~~~~~~~-~~~eGgd~~~~~~~~~~g~~~rtn~~g~e~l~~~~~  147 (255)
T d1h70a_          71 CTSRCAIIT-RPGAESRRGETEIIEETVQ-RFYPGKVERIEAP-GTVEAGDIMMVGDHFYIGESARTNAEGARQMIAILE  147 (255)
T ss_dssp             ECSSCEEEC-BCSSGGGTTHHHHHHHHHH-HHSTTCEEECCTT-CCBCGGGEEEETTEEEEEECSSSCHHHHHHHHHHHH
T ss_pred             EECCCEEEe-cccchhhhchhhHHHHHHH-HcCCCeeeecccc-cccCCCcceeeccceeEEeeccchHHHHHHHHHHHH
Confidence            456667777 66 7999999999999999 8888845666765 99999999988      9999999999999999998


Q ss_pred             --CCCeEEEeCCCCCCCccccccccCCeEEEEcC
Q psy958           89 --EYPCTAIKVKNKNPKAKMSTSTGIDQLLVRTQ  120 (137)
Q Consensus        89 --~y~V~~V~v~~~LHLK~~vs~lg~~~llv~~~  120 (137)
                        +|.++.++.+..+||||++++++++.+++...
T Consensus       148 ~~~~~~~~~~~~~~~Hld~~~~~~~~~~~l~~~~  181 (255)
T d1h70a_         148 KHGLSGSVVRLEKVLHLKTGLAYLEHNNLLAAGE  181 (255)
T ss_dssp             HTTCEEEEEECSSSSSGGGSEEECSTTEEEECGG
T ss_pred             hcCcEEEEecccccccccceeeecCCCceeeCHh
Confidence              67888888889999999999999999988754



>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini [TaxId: 2094]} Back     information, alignment and structure
>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1bwda_ d.126.1.2 (A:) L-arginine: inosamine-phosphate amidinotransferase {Streptomyces griseus [TaxId: 1911]} Back     information, alignment and structure
>d1jdwa_ d.126.1.2 (A:) L-arginine: glycine amidinotransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbra1 d.126.1.6 (A:3-341) Putative peptidyl-arginine deiminase {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1xkna_ d.126.1.6 (A:) Putative peptidyl-arginine deiminase {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2jera1 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Streptococcus mutans [TaxId: 1309]} Back     information, alignment and structure
>d2cmua1 d.126.1.6 (A:3-332) Putative peptidyl-arginine deiminase {Helicobacter pylori J99 [TaxId: 85963]} Back     information, alignment and structure