Psyllid ID: psy9595

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
GASSSEDFEPSPPAKKKTKAAATGKGAKKKPRTPSKKTKVVKEKAESGVQEEGEVKSTIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccEEcccHHHHHcHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEccccccHHHHHHHHccccccccccccHHHHHHHHHHHccccccEEccccccccccccccccccccccHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHcHHHHccccccccccccccccEEEEcccccccEcccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHccccHcccEEEcccccccccccccccHHHHHccEEccccEEEEcccccHEEEEccccccccHHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccccccccccccHHcHHHHHHHHHHHHHHcccEEc
Coil and Loop (DISEMBL)
gasssedfepsppakkktkaaatgkgakkkprtpskktkVVKEKaesgvqeegeVKSTIKTLlpvkqerkheimvfrptyeefKDFSKFITYMESqgahkaglakvipppewvprksgysldssigdmsipapicqvvtgkqglYQQINIQKRQMTVREYgamankpryatpkhfdyedLERKYWKNityvspiygadvsgsitdedvnvwNINHLGTILdyvnedygisid
Flexible Loop (DISEMBL)
gasssedfepsppakkktkaaatgkgakkkprtpskktkvvkekaesgvqeegevkstiktllpvkqerkheimvfrptyeEFKDFSKFITYMESQGAHKAGLakvipppewvpRKSGYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGamankpryatpkhfdyEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLgtildyvnEDYGISID
Low Complexity Region (SEG)
GASSSEDFEPSPPakkktkaaatgkgakkkprtpskktkvvkEKAESGVQEEGEVKSTIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID
Disordered region (IsUnstruct)
*************************************************************LLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGI***
Disordered Region (DISOPRED)
**********************************************************************HEIMVFRPTYEEFKDFSKFITYMESQGAHKAGL**VIPPPEWVPRKSGYSLDSSIGDMSIPA***************INIQKRQMTVREYGAMAN**********DYEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGI***
Disordered Region (DISEMBL)
********************************************************STIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID
Disordered Region (DISPRO)
********************************************************************RKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GASSSEDFEPSPPAKKKTKAAATGKGAKKKPRTPSKKTKVVKEKAESGVQEEGEVKSTIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q9V6L0	590	Probable lysine-specific	yes	N/A	0.685	0.269	0.75	3e-70
Q9V333	495	Probable lysine-specific	no	N/A	0.75	0.351	0.610	2e-55
Q8VCD7	1054	Lysine-specific demethyla	yes	N/A	0.672	0.148	0.593	2e-54
O94953	1096	Lysine-specific demethyla	no	N/A	0.698	0.147	0.596	2e-54
Q9H3R0	1056	Lysine-specific demethyla	no	N/A	0.672	0.147	0.593	2e-54
Q91VY5	1086	Lysine-specific demethyla	no	N/A	0.672	0.143	0.593	8e-54
Q8BW72	1064	Lysine-specific demethyla	no	N/A	0.672	0.146	0.562	2e-50
O75164	1064	Lysine-specific demethyla	no	N/A	0.672	0.146	0.562	4e-50
Q5RD88	1064	Lysine-specific demethyla	no	N/A	0.672	0.146	0.562	4e-50
Q3U2K5	510	Lysine-specific demethyla	no	N/A	0.732	0.333	0.534	6e-48

>sp|Q9V6L0|KDM4B_DROME Probable lysine-specific demethylase 4B OS=Drosophila melanogaster GN=Kdm4B PE=3 SV=3

 Score =  265 bits (676), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 120/160 (75%), Positives = 140/160 (87%), Gaps = 1/160 (0%)

Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           I VFRPT+EEFKDF K++ YMESQGAHKAGLAKV+PPPEWVPR+SGY+ D    +++IPA
Sbjct: 9   IKVFRPTWEEFKDFPKYVAYMESQGAHKAGLAKVVPPPEWVPRRSGYA-DLDALNVTIPA 67

Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           PICQVVTGKQG YQQINIQK+ +TV+++  +A+  RYATPKHFD+EDLERKYWKNITYV+
Sbjct: 68  PICQVVTGKQGYYQQINIQKKPLTVKQFSELASTERYATPKHFDFEDLERKYWKNITYVA 127

Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGADVSGSITD D + WNIN LGTILDYVN+DY I ID
Sbjct: 128 PIYGADVSGSITDTDQDSWNINRLGTILDYVNKDYNIQID 167

Probable histone demethylase that specifically demethylates 'Lys-9' and 'Lys-36' residues of histone H3, thereby playing a central role in histone code. Demethylation of Lys residue generates formaldehyde and succinate.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

>sp|Q9V333|KDM4A_DROME Probable lysine-specific demethylase 4A OS=Drosophila melanogaster GN=Kdm4A PE=1 SV=1

 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/177 (61%), Positives = 138/177 (77%), Gaps = 3/177 (1%)

Query: 57  STIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRK 116
           ST  +    +Q +   IM FRP+YEEF++FS +I Y+ES+GAH AGLAK+ PP EWVPRK
Sbjct: 2   STRSSFADEEQNKVPRIMTFRPSYEEFQNFSAYIEYIESRGAHLAGLAKIQPPAEWVPRK 61

Query: 117 SGYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQ-MTVREYGAMANKPRYATPKHF 175
           SGY +D+   +M+IPAPICQVVTG  G+YQQINIQ+R+ MT+R++   AN   + TP+HF
Sbjct: 62  SGYDIDNI--NMTIPAPICQVVTGAHGVYQQINIQQRRQMTLRQFMEKANSELHQTPRHF 119

Query: 176 DYEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           DY+DLERKYWKNITY+SP+Y ADV GS++DED++VWNI  L TIL+ VN DY I ID
Sbjct: 120 DYDDLERKYWKNITYISPLYAADVKGSLSDEDLDVWNIGRLDTILNLVNTDYNIIID 176

Probable histone demethylase that specifically demethylates 'Lys-9' and 'Lys-36' residues of histone H3, thereby playing a central role in histone code. Demethylation of Lys residue generates formaldehyde and succinate.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q8VCD7|KDM4C_MOUSE Lysine-specific demethylase 4C OS=Mus musculus GN=Kdm4c PE=1 SV=1

 Score =  212 bits (540), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 95/160 (59%), Positives = 126/160 (78%), Gaps = 4/160 (2%)

Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           IM FRP+ EEF++F+K++ YMES+GAH+AGLAKVIPP EW PR+    +D    ++ IPA
Sbjct: 16  IMTFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKPRQCYDDID----NLLIPA 71

Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           PI Q+VTG+ GL+ Q NIQK+ MTV+E+  +AN  +Y TP++ DYEDLERKYWKN+T+V+
Sbjct: 72  PIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLANSSKYCTPRYLDYEDLERKYWKNLTFVA 131

Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGAD++GSI DE V+ WNI  L T+LD V E+ GISI+
Sbjct: 132 PIYGADINGSIYDEGVDEWNIARLNTVLDVVEEECGISIE 171

Histone demethylase that specifically demethylates 'Lys-9' and 'Lys-36' residues of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27' nor H4 'Lys-20'. Demethylates trimethylated H3 'Lys-9' and H3 'Lys-36' residue, while it has no activity on mono- and dimethylated residues. Demethylation of Lys residue generates formaldehyde and succinate.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|O94953|KDM4B_HUMAN Lysine-specific demethylase 4B OS=Homo sapiens GN=KDM4B PE=1 SV=4

 Score =  212 bits (539), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 99/166 (59%), Positives = 125/166 (75%), Gaps = 4/166 (2%)

Query: 67  QERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIG 126
           Q    +IM FRPT EEFKDF+K++ Y+ESQGAH+AGLAK+IPP EW PR++   +D    
Sbjct: 9   QNPSCKIMTFRPTMEEFKDFNKYVAYIESQGAHRAGLAKIIPPKEWKPRQTYDDID---- 64

Query: 127 DMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWK 186
           D+ IPAPI QVVTG+ GL+ Q NIQK+ MTV EY  +AN  +Y TP+H D++DLERKYWK
Sbjct: 65  DVVIPAPIQQVVTGQSGLFTQYNIQKKAMTVGEYRRLANSEKYCTPRHQDFDDLERKYWK 124

Query: 187 NITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           N+T+VSPIYGAD+SGS+ D+DV  WNI  L TILD V  + G  I+
Sbjct: 125 NLTFVSPIYGADISGSLYDDDVAQWNIGSLRTILDMVERECGTIIE 170

Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27', H3 'Lys-36' nor H4 'Lys-20'. Only able to demethylate trimethylated H3 'Lys-9', with a weaker activity than KDM4A, KDM4C and KDM4D. Demethylation of Lys residue generates formaldehyde and succinate.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9H3R0|KDM4C_HUMAN Lysine-specific demethylase 4C OS=Homo sapiens GN=KDM4C PE=1 SV=2

 Score =  212 bits (539), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 95/160 (59%), Positives = 126/160 (78%), Gaps = 4/160 (2%)

Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           IM FRP+ EEF++F+K++ YMES+GAH+AGLAKVIPP EW PR+    +D    ++ IPA
Sbjct: 16  IMTFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKPRQCYDDID----NLLIPA 71

Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           PI Q+VTG+ GL+ Q NIQK+ MTV+E+  +AN  +Y TP++ DYEDLERKYWKN+T+V+
Sbjct: 72  PIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLANSGKYCTPRYLDYEDLERKYWKNLTFVA 131

Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGAD++GSI DE V+ WNI  L T+LD V E+ GISI+
Sbjct: 132 PIYGADINGSIYDEGVDEWNIARLNTVLDVVEEECGISIE 171

Histone demethylase that specifically demethylates 'Lys-9' and 'Lys-36' residues of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27' nor H4 'Lys-20'. Demethylates trimethylated H3 'Lys-9' and H3 'Lys-36' residue, while it has no activity on mono- and dimethylated residues. Demethylation of Lys residue generates formaldehyde and succinate.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q91VY5|KDM4B_MOUSE Lysine-specific demethylase 4B OS=Mus musculus GN=Kdm4b PE=1 SV=1

 Score =  210 bits (534), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 95/160 (59%), Positives = 124/160 (77%), Gaps = 4/160 (2%)

Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           IM FRPT +EF+DF++++ Y+ESQGAH+AGLAK+IPP EW PR++   +D    D+ IPA
Sbjct: 15  IMTFRPTMDEFRDFNRYVAYIESQGAHRAGLAKIIPPKEWKPRQTYDDID----DVVIPA 70

Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           PI QVVTG+ GL+ Q NIQK+ MTV EY  +AN  +Y TP+H D++DLERKYWKN+T+VS
Sbjct: 71  PIQQVVTGQSGLFTQYNIQKKAMTVGEYRRLANSEKYCTPRHQDFDDLERKYWKNLTFVS 130

Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGAD+SGS+ D+DV  WNI +L TILD V  + G  I+
Sbjct: 131 PIYGADISGSLYDDDVAQWNIGNLRTILDMVERECGTIIE 170

Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27', H3 'Lys-36' nor H4 'Lys-20'. Only able to demethylate trimethylated H3 'Lys-9', with a weaker activity than KDM4A, KDM4C and KDM4D. Demethylation of Lys residue generates formaldehyde and succinate.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q8BW72|KDM4A_MOUSE Lysine-specific demethylase 4A OS=Mus musculus GN=Kdm4a PE=1 SV=3

 Score =  198 bits (504), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 123/160 (76%), Gaps = 4/160 (2%)

Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           IM F PT EEF++FS++I Y+ESQGAH+AGLAKV+PP EW PR S   +D    D+ IPA
Sbjct: 14  IMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRTSYDDID----DLVIPA 69

Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           PI Q+VTG+ GL+ Q NIQK+ MTVRE+  +AN  +Y TP++ ++E+LERKYWKN+T+  
Sbjct: 70  PIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFNP 129

Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGADV+G++ ++ V+ WNI  L TILD V ++ GI+I+
Sbjct: 130 PIYGADVNGTLYEQHVDEWNIGRLKTILDLVEKESGITIE 169

Histone demethylase that specifically demethylates 'Lys-9' and 'Lys-36' residues of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27' nor H4 'Lys-20'. Demethylates trimethylated H3 'Lys-9' and H3 'Lys-36' residue, while it has no activity on mono- and dimethylated residues. Demethylation of Lys residue generates formaldehyde and succinate. Participates in transcriptional repression of ASCL2 and E2F-responsive promoters via the recruitment of histone deacetylases and NCOR1, respectively.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|O75164|KDM4A_HUMAN Lysine-specific demethylase 4A OS=Homo sapiens GN=KDM4A PE=1 SV=2

 Score =  197 bits (502), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 123/160 (76%), Gaps = 4/160 (2%)

Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           IM F PT EEF++FS++I Y+ESQGAH+AGLAKV+PP EW PR S   +D    D+ IPA
Sbjct: 14  IMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDID----DLVIPA 69

Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           PI Q+VTG+ GL+ Q NIQK+ MTVRE+  +AN  +Y TP++ ++E+LERKYWKN+T+  
Sbjct: 70  PIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFNP 129

Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGADV+G++ ++ V+ WNI  L TILD V ++ GI+I+
Sbjct: 130 PIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIE 169

Histone demethylase that specifically demethylates 'Lys-9' and 'Lys-36' residues of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27' nor H4 'Lys-20'. Demethylates trimethylated H3 'Lys-9' and H3 'Lys-36' residue, while it has no activity on mono- and dimethylated residues. Demethylation of Lys residue generates formaldehyde and succinate. Participates in transcriptional repression of ASCL2 and E2F-responsive promoters via the recruitment of histone deacetylases and NCOR1, respectively.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q5RD88|KDM4A_PONAB Lysine-specific demethylase 4A OS=Pongo abelii GN=KDM4A PE=2 SV=1

 Score =  197 bits (502), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 123/160 (76%), Gaps = 4/160 (2%)

Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           IM F PT EEF++FS++I Y+ESQGAH+AGLAKV+PP EW PR S   +D    D+ IPA
Sbjct: 14  IMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDID----DLVIPA 69

Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           PI Q+VTG+ GL+ Q NIQK+ MTVRE+  +AN  +Y TP++ ++E+LERKYWKN+T+  
Sbjct: 70  PIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFNP 129

Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGADV+G++ ++ V+ WNI  L TILD V ++ GI+I+
Sbjct: 130 PIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIE 169

Histone demethylase that specifically demethylates 'Lys-9' and 'Lys-36' residues of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27' nor H4 'Lys-20'. Demethylates trimethylated H3 'Lys-9' and H3 'Lys-36' residue, while it has no activity on mono- and dimethylated residues. Demethylation of Lys residue generates formaldehyde and succinate. Participates in transcriptional repression of ASCL2 and E2F-responsive promoters via the recruitment of histone deacetylases and NCOR1, respectively.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q3U2K5|KDM4D_MOUSE Lysine-specific demethylase 4D OS=Mus musculus GN=Kdm4d PE=2 SV=2

 Score =  190 bits (483), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 93/174 (53%), Positives = 118/174 (67%), Gaps = 4/174 (2%)

Query: 59  IKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSG 118
           +KT     Q     IM+FRPT EEF DF K+I YMESQGAH+AGLAKVIPP EW  R+S 
Sbjct: 1   MKTKSTCAQNPNCSIMIFRPTKEEFNDFDKYIAYMESQGAHRAGLAKVIPPKEWRARQS- 59

Query: 119 YSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYE 178
                +I ++ I  P+ QVV+G+ G++ Q + +K+ MTV EY  +AN  +Y TP H D+E
Sbjct: 60  ---YDNISNILIATPLQQVVSGQAGVFTQYHKKKKGMTVGEYRELANSKKYQTPPHLDFE 116

Query: 179 DLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           DLERKYWKN  Y SPIYGADVSGS+ D     WN+ HLGTI D + ++ GI I+
Sbjct: 117 DLERKYWKNRLYESPIYGADVSGSLFDGKTQQWNVGHLGTIQDLLEQECGIVIE 170

Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27', H3 'Lys-36' nor H4 'Lys-20'. Demethylates both di- and trimethylated H3 'Lys-9' residue, while it has no activity on monomethylated residues. Demethylation of Lys residue generates formaldehyde and succinate.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
332027811	1421	Putative lysine-specific demethylase 4B	0.681	0.111	0.818	2e-76
307187146	1556	Probable JmjC domain-containing histone	0.681	0.101	0.812	8e-76
380019273	1579	PREDICTED: uncharacterized protein LOC10	0.681	0.100	0.806	2e-75
307208761	1584	Probable JmjC domain-containing histone	0.681	0.099	0.806	3e-75
189238453	1050	PREDICTED: similar to CG33182 CG33182-PA	0.706	0.156	0.783	4e-75
383855178	1588	PREDICTED: uncharacterized protein LOC10	0.681	0.099	0.806	1e-74
340715894	1543	PREDICTED: hypothetical protein LOC10064	0.681	0.102	0.8	4e-74
345482567	1538	PREDICTED: lysine-specific demethylase 4	0.681	0.102	0.787	4e-74
350418041	1540	PREDICTED: hypothetical protein LOC10074	0.681	0.102	0.8	4e-74
158287438	492	AGAP011180-PA [Anopheles gambiae str. PE	0.715	0.337	0.744	7e-72

>gi|332027811|gb|EGI67876.1| Putative lysine-specific demethylase 4B [Acromyrmex echinatior]

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 131/160 (81%), Positives = 146/160 (91%), Gaps = 2/160 (1%)

Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           I+VFRPTYEEFKDF+K++ YMES+GAHKAGLAKVIPPPEWVPRK GY+LD    D++IPA
Sbjct: 11  ILVFRPTYEEFKDFTKYVEYMESRGAHKAGLAKVIPPPEWVPRKKGYNLDEL--DLTIPA 68

Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           PICQVVTGKQGLYQQINIQK+ MTV+EY  +AN  RYATP+HFDYEDLERKYWKNITYV+
Sbjct: 69  PICQVVTGKQGLYQQINIQKKSMTVQEYSKLANSDRYATPRHFDYEDLERKYWKNITYVA 128

Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGADVSGS+TD DV  WNINHLGTILDYVN+DYGISID
Sbjct: 129 PIYGADVSGSLTDPDVKEWNINHLGTILDYVNKDYGISID 168

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187146|gb|EFN72390.1| Probable JmjC domain-containing histone demethylation protein 3B [Camponotus floridanus]

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 130/160 (81%), Positives = 145/160 (90%), Gaps = 2/160 (1%)

Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           I VFRPTYEEFK+F+K++ YMESQGAHKAGLAKVIPPPEWVPRK+GY+LD    D++IPA
Sbjct: 11  IQVFRPTYEEFKNFTKYVEYMESQGAHKAGLAKVIPPPEWVPRKTGYNLDEL--DLTIPA 68

Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           PICQVVTGKQGLYQQINIQK+ MTV+EY  +AN  RY TP+HFDYEDLERKYWKNITYV+
Sbjct: 69  PICQVVTGKQGLYQQINIQKKSMTVQEYSKLANSERYVTPRHFDYEDLERKYWKNITYVA 128

Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGADVSGS+TD DV  WNINHLGTILDYVN+DYGISID
Sbjct: 129 PIYGADVSGSLTDPDVKEWNINHLGTILDYVNKDYGISID 168

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019273|ref|XP_003693535.1| PREDICTED: uncharacterized protein LOC100867689 [Apis florea]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 129/160 (80%), Positives = 143/160 (89%), Gaps = 2/160 (1%)

Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           I VFRPTYEEFKDF+K++ YMES+GAHKAGLAKVIPPPEW+PRK GY LD    D++IPA
Sbjct: 12  IQVFRPTYEEFKDFTKYVEYMESKGAHKAGLAKVIPPPEWIPRKKGYDLDDL--DLTIPA 69

Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           PICQVVTGKQGLYQQINIQK+ MTV+EY  +AN  RY TP+HFDYEDLERKYWKNITYV+
Sbjct: 70  PICQVVTGKQGLYQQINIQKKSMTVKEYSKLANSERYNTPRHFDYEDLERKYWKNITYVA 129

Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGADVSGS+TD DV  WNINHLGTILDYVN+DYGISID
Sbjct: 130 PIYGADVSGSLTDPDVKEWNINHLGTILDYVNKDYGISID 169

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208761|gb|EFN86038.1| Probable JmjC domain-containing histone demethylation protein 3B [Harpegnathos saltator]

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 129/160 (80%), Positives = 144/160 (90%), Gaps = 2/160 (1%)

Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           I VFRPTYEEFKDFSK++ YMESQGAHKAGLAKVIPPPEW+PRK GY LD+   +++IPA
Sbjct: 12  IQVFRPTYEEFKDFSKYVEYMESQGAHKAGLAKVIPPPEWIPRKQGYELDNL--NLTIPA 69

Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           PICQVVTGKQGLYQQINIQK+ MTV+EY  +A+  RY TP+HFDYEDLERKYWKNITY+S
Sbjct: 70  PICQVVTGKQGLYQQINIQKKPMTVKEYNKLADSDRYRTPRHFDYEDLERKYWKNITYIS 129

Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGADVSGS+TD DV  WNINHLGTILDYVN+DYGISID
Sbjct: 130 PIYGADVSGSLTDPDVKEWNINHLGTILDYVNKDYGISID 169

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189238453|ref|XP_974381.2| PREDICTED: similar to CG33182 CG33182-PA [Tribolium castaneum] gi|270009031|gb|EFA05479.1| hypothetical protein TcasGA2_TC015663 [Tribolium castaneum]

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 130/166 (78%), Positives = 152/166 (91%), Gaps = 2/166 (1%)

Query: 67  QERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIG 126
           Q+R  +IMVFRPT++EFKDFS++I +MES+GAHKAGLAKVIPPPEWVPRKSGY++D+   
Sbjct: 6   QQRCPKIMVFRPTWDEFKDFSQYIQHMESKGAHKAGLAKVIPPPEWVPRKSGYAIDTL-- 63

Query: 127 DMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWK 186
           D++IPAPICQVVTGKQGLYQQINIQK+ MTV++Y  +AN  RYATP+HFDYEDLERKYWK
Sbjct: 64  DVTIPAPICQVVTGKQGLYQQINIQKKSMTVQQYCELANSERYATPRHFDYEDLERKYWK 123

Query: 187 NITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           NITYV+PIYGADVSGS+TD+ VN WNIN LGTILDYVNEDYGISI+
Sbjct: 124 NITYVAPIYGADVSGSLTDDTVNEWNINRLGTILDYVNEDYGISIE 169

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855178|ref|XP_003703094.1| PREDICTED: uncharacterized protein LOC100877957 [Megachile rotundata]

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 129/160 (80%), Positives = 142/160 (88%), Gaps = 2/160 (1%)

Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           I VFRPTYEEFKDF+K+I YMES+GAHKAGLAKVIPPPEW+PRK GY LD    ++ IPA
Sbjct: 12  IQVFRPTYEEFKDFTKYIEYMESKGAHKAGLAKVIPPPEWIPRKGGYDLDDL--NLVIPA 69

Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           PICQVVTGKQGLYQQINIQK+ MTV+EY  +AN  RY TP+HFDYEDLERKYWKNITYV+
Sbjct: 70  PICQVVTGKQGLYQQINIQKKSMTVKEYSKLANSERYNTPRHFDYEDLERKYWKNITYVA 129

Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGADVSGS+TD DV  WNINHLGTILDYVN+DYGISID
Sbjct: 130 PIYGADVSGSLTDPDVKEWNINHLGTILDYVNKDYGISID 169

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715894|ref|XP_003396442.1| PREDICTED: hypothetical protein LOC100648978 [Bombus terrestris]

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 128/160 (80%), Positives = 143/160 (89%), Gaps = 2/160 (1%)

Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           I VFRPTYEEFKDF+K++ YMES+GAHKAGLAKVIPP EW+PRK GY+LD    D++IPA
Sbjct: 12  IQVFRPTYEEFKDFTKYVEYMESKGAHKAGLAKVIPPVEWIPRKRGYNLDDM--DLTIPA 69

Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           PICQVVTGKQGLYQQINIQK+ MTV+EY  +AN  RY TP+HFDYEDLERKYWKNITYV+
Sbjct: 70  PICQVVTGKQGLYQQINIQKKSMTVKEYRKLANSERYNTPRHFDYEDLERKYWKNITYVA 129

Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGADVSGS+TD DV  WNINHLGTILDYVN+DYGISID
Sbjct: 130 PIYGADVSGSLTDPDVKEWNINHLGTILDYVNKDYGISID 169

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482567|ref|XP_001608199.2| PREDICTED: lysine-specific demethylase 4B-like [Nasonia vitripennis]

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 126/160 (78%), Positives = 145/160 (90%), Gaps = 2/160 (1%)

Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           I VFRPTYEEFKDF+K++ YMESQ AHKAG+AKVIPPPEW+ RK+GY++D+   +++IPA
Sbjct: 12  IQVFRPTYEEFKDFTKYVAYMESQNAHKAGIAKVIPPPEWIARKNGYNMDNI--NLTIPA 69

Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           PICQVVTGKQGLYQQINIQK+ MTV+EY  +AN  RY TPKHFDYEDLERKYWKNITYV+
Sbjct: 70  PICQVVTGKQGLYQQINIQKKSMTVQEYEKLANSERYRTPKHFDYEDLERKYWKNITYVA 129

Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGADVSGS+TD DVN WNINHLGTILDYVN+DYGISI+
Sbjct: 130 PIYGADVSGSLTDPDVNEWNINHLGTILDYVNKDYGISIE 169

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418041|ref|XP_003491705.1| PREDICTED: hypothetical protein LOC100748259 [Bombus impatiens]

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 128/160 (80%), Positives = 143/160 (89%), Gaps = 2/160 (1%)

Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           I VFRPTYEEFKDF+K++ YMES+GAHKAGLAKVIPP EW+PRK GY+LD    D++IPA
Sbjct: 12  IQVFRPTYEEFKDFTKYVEYMESRGAHKAGLAKVIPPVEWIPRKRGYNLDDM--DLTIPA 69

Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           PICQVVTGKQGLYQQINIQK+ MTV+EY  +AN  RY TP+HFDYEDLERKYWKNITYV+
Sbjct: 70  PICQVVTGKQGLYQQINIQKKSMTVKEYRKLANSERYNTPRHFDYEDLERKYWKNITYVA 129

Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGADVSGS+TD DV  WNINHLGTILDYVN+DYGISID
Sbjct: 130 PIYGADVSGSLTDPDVKEWNINHLGTILDYVNKDYGISID 169

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158287438|ref|XP_309467.4| AGAP011180-PA [Anopheles gambiae str. PEST] gi|157019651|gb|EAA05143.4| AGAP011180-PA [Anopheles gambiae str. PEST]

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 148/168 (88%), Gaps = 2/168 (1%)

Query: 65  VKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSS 124
           + ++ + +I VFRPT+EEFKDF K+I Y+ESQGAHKAGLAK+IPPPEW PRKSGY LDS 
Sbjct: 2   MSEDTRVKIQVFRPTWEEFKDFPKYIEYIESQGAHKAGLAKIIPPPEWKPRKSGYDLDSL 61

Query: 125 IGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKY 184
             D++IP+PICQVV GKQGLYQQINIQK  +TV+++  +AN  RYATPKHFD+EDLERKY
Sbjct: 62  --DITIPSPICQVVAGKQGLYQQINIQKNPLTVKQFAELANTERYATPKHFDFEDLERKY 119

Query: 185 WKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           WKNITYV+PIYGADV GSITD+D N+WNINHLGTILD+V+EDYGISID
Sbjct: 120 WKNITYVAPIYGADVCGSITDKDCNIWNINHLGTILDFVDEDYGISID 167

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
FB|FBgn0053182	590	Kdm4B "Histone demethylase 4B"	0.719	0.283	0.720	2e-65
FB|FBgn0033233	495	Kdm4A "Histone demethylase 4A"	0.75	0.351	0.615	4.6e-57
ZFIN|ZDB-GENE-060503-664	1134	kdm4b "lysine (K)-specific dem	0.681	0.139	0.635	3.5e-52
UNIPROTKB|E1BX38	1095	Gga.52669 "Uncharacterized pro	0.711	0.150	0.609	3.7e-51
UNIPROTKB|E1BA41	1116	KDM4B "Uncharacterized protein	0.676	0.140	0.614	4.7e-50
UNIPROTKB|O94953	1096	KDM4B "Lysine-specific demethy	0.676	0.143	0.614	7.3e-50
UNIPROTKB|F5GX28	1130	KDM4B "Lysine-specific demethy	0.676	0.138	0.614	8e-50
UNIPROTKB|E2R243	1133	KDM4B "Uncharacterized protein	0.676	0.138	0.614	8.1e-50
UNIPROTKB|F1PHR7	1053	KDM4C "Uncharacterized protein	0.676	0.149	0.596	1.8e-49
RGD|1307528	1053	Kdm4c "lysine (K)-specific dem	0.676	0.149	0.596	2.2e-49

FB|FBgn0053182 Kdm4B "Histone demethylase 4B" [Drosophila melanogaster (taxid:7227)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 121/168 (72%), Positives = 142/168 (84%)

Query:    65 VKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSS 124
             +K      I VFRPT+EEFKDF K++ YMESQGAHKAGLAKV+PPPEWVPR+SGY+ D  
Sbjct:     1 MKMSEVPRIKVFRPTWEEFKDFPKYVAYMESQGAHKAGLAKVVPPPEWVPRRSGYA-DLD 59

Query:   125 IGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKY 184
               +++IPAPICQVVTGKQG YQQINIQK+ +TV+++  +A+  RYATPKHFD+EDLERKY
Sbjct:    60 ALNVTIPAPICQVVTGKQGYYQQINIQKKPLTVKQFSELASTERYATPKHFDFEDLERKY 119

Query:   185 WKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
             WKNITYV+PIYGADVSGSITD D + WNIN LGTILDYVN+DY I ID
Sbjct:   120 WKNITYVAPIYGADVSGSITDTDQDSWNINRLGTILDYVNKDYNIQID 167

GO:0016577 "histone demethylation" evidence=ISS

GO:0051864 "histone demethylase activity (H3-K36 specific)" evidence=ISS;IDA;IMP

GO:0005634 "nucleus" evidence=ISS

GO:0070544 "histone H3-K36 demethylation" evidence=IMP

GO:0033169 "histone H3-K9 demethylation" evidence=IDA;IMP

GO:0032454 "histone demethylase activity (H3-K9 specific)" evidence=IDA;IMP

FB|FBgn0033233 Kdm4A "Histone demethylase 4A" [Drosophila melanogaster (taxid:7227)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 109/177 (61%), Positives = 138/177 (77%)

Query:    57 STIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRK 116
             ST  +    +Q +   IM FRP+YEEF++FS +I Y+ES+GAH AGLAK+ PP EWVPRK
Sbjct:     2 STRSSFADEEQNKVPRIMTFRPSYEEFQNFSAYIEYIESRGAHLAGLAKIQPPAEWVPRK 61

Query:   117 SGYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQ-KRQMTVREYGAMANKPRYATPKHF 175
             SGY +D+   +M+IPAPICQVVTG  G+YQQINIQ +RQMT+R++   AN   + TP+HF
Sbjct:    62 SGYDIDNI--NMTIPAPICQVVTGAHGVYQQINIQQRRQMTLRQFMEKANSELHQTPRHF 119

Query:   176 DYEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
             DY+DLERKYWKNITY+SP+Y ADV GS++DED++VWNI  L TIL+ VN DY I ID
Sbjct:   120 DYDDLERKYWKNITYISPLYAADVKGSLSDEDLDVWNIGRLDTILNLVNTDYNIIID 176

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0016577 "histone demethylation" evidence=ISS

GO:0051864 "histone demethylase activity (H3-K36 specific)" evidence=ISS;IDA;IMP

GO:0033169 "histone H3-K9 demethylation" evidence=IMP

GO:0032454 "histone demethylase activity (H3-K9 specific)" evidence=IMP

GO:0070544 "histone H3-K36 demethylation" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=IMP

ZFIN|ZDB-GENE-060503-664 kdm4b "lysine (K)-specific demethylase 4B" [Danio rerio (taxid:7955)]

 Score = 551 (199.0 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 103/162 (63%), Positives = 127/162 (78%)

Query:    71 HEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSI 130
             ++IM FRPT EEFKDF K+I YME+QGAH AGLAKVIPP EW PR+S Y    +I DM I
Sbjct:    93 NKIMTFRPTMEEFKDFGKYIAYMETQGAHVAGLAKVIPPKEWKPRRS-YE---TIEDMVI 148

Query:   131 PAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITY 190
             PAPI QVVTG+ GL+ Q NIQK+ MTV EY  +AN  +Y TP+H D++DLERKYWKN+T+
Sbjct:   149 PAPIMQVVTGQSGLFTQYNIQKKSMTVGEYRKLANSKKYNTPQHKDFDDLERKYWKNLTF 208

Query:   191 VSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
             VSPIYGAD+SGS+ D D++ WNI HL T+LD V ++ GI I+
Sbjct:   209 VSPIYGADISGSLYDPDISEWNIGHLNTLLDMVEQECGIVIE 250

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BX38 Gga.52669 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 541 (195.5 bits), Expect = 3.7e-51, P = 3.7e-51
 Identities = 103/169 (60%), Positives = 126/169 (74%)

Query:    64 PVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDS 123
             P  Q    +IM FRPT EEF++F K++ Y+ESQGAH+AGLAKVIPP EW PRK+ Y    
Sbjct:     6 PSPQNPGCKIMTFRPTLEEFREFGKYVAYIESQGAHRAGLAKVIPPKEWKPRKT-YD--- 61

Query:   124 SIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERK 183
              I DM IPAPI QVVTG+ GL+ Q NIQK+ MTV EY  +AN  +Y TP+H D+EDLERK
Sbjct:    62 DIDDMIIPAPIQQVVTGQSGLFTQYNIQKKPMTVGEYRRLANSEKYCTPRHQDFEDLERK 121

Query:   184 YWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
             YWKN+T+VSPIYGAD+SGS+ D DV  WNI +L T+LD V  + GI I+
Sbjct:   122 YWKNLTFVSPIYGADISGSLYDTDVEEWNIGNLNTLLDMVEHECGIIIE 170

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BA41 KDM4B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 531 (192.0 bits), Expect = 4.7e-50, P = 4.7e-50
 Identities = 99/161 (61%), Positives = 125/161 (77%)

Query:    72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIP 131
             +IM FRPT EEFKDF+K++ Y+ESQGAH+AGLAK+IPP EW PR++ Y     I D+ IP
Sbjct:    14 KIMTFRPTMEEFKDFNKYVAYIESQGAHRAGLAKIIPPKEWKPRQT-YD---DIDDVVIP 69

Query:   132 APICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYV 191
             API QVVTG+ GL+ Q NIQK+ MTV EY  +AN  +Y TP+H D++DLERKYWKN+T+V
Sbjct:    70 APIQQVVTGQSGLFTQYNIQKKAMTVGEYRRLANSEKYCTPRHQDFDDLERKYWKNLTFV 129

Query:   192 SPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
             SPIYGAD+SGS+ D+DV  WNI +L TILD V  + G  I+
Sbjct:   130 SPIYGADISGSLYDDDVAQWNIGNLRTILDMVERECGTIIE 170

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|O94953 KDM4B "Lysine-specific demethylase 4B" [Homo sapiens (taxid:9606)]

 Score = 529 (191.3 bits), Expect = 7.3e-50, P = 7.3e-50
 Identities = 99/161 (61%), Positives = 124/161 (77%)

Query:    72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIP 131
             +IM FRPT EEFKDF+K++ Y+ESQGAH+AGLAK+IPP EW PR++ Y     I D+ IP
Sbjct:    14 KIMTFRPTMEEFKDFNKYVAYIESQGAHRAGLAKIIPPKEWKPRQT-YD---DIDDVVIP 69

Query:   132 APICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYV 191
             API QVVTG+ GL+ Q NIQK+ MTV EY  +AN  +Y TP+H D++DLERKYWKN+T+V
Sbjct:    70 APIQQVVTGQSGLFTQYNIQKKAMTVGEYRRLANSEKYCTPRHQDFDDLERKYWKNLTFV 129

Query:   192 SPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
             SPIYGAD+SGS+ D+DV  WNI  L TILD V  + G  I+
Sbjct:   130 SPIYGADISGSLYDDDVAQWNIGSLRTILDMVERECGTIIE 170

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F5GX28 KDM4B "Lysine-specific demethylase 4B" [Homo sapiens (taxid:9606)]

 Score = 529 (191.3 bits), Expect = 8.0e-50, P = 8.0e-50
 Identities = 99/161 (61%), Positives = 124/161 (77%)

Query:    72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIP 131
             +IM FRPT EEFKDF+K++ Y+ESQGAH+AGLAK+IPP EW PR++ Y     I D+ IP
Sbjct:    14 KIMTFRPTMEEFKDFNKYVAYIESQGAHRAGLAKIIPPKEWKPRQT-YD---DIDDVVIP 69

Query:   132 APICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYV 191
             API QVVTG+ GL+ Q NIQK+ MTV EY  +AN  +Y TP+H D++DLERKYWKN+T+V
Sbjct:    70 APIQQVVTGQSGLFTQYNIQKKAMTVGEYRRLANSEKYCTPRHQDFDDLERKYWKNLTFV 129

Query:   192 SPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
             SPIYGAD+SGS+ D+DV  WNI  L TILD V  + G  I+
Sbjct:   130 SPIYGADISGSLYDDDVAQWNIGSLRTILDMVERECGTIIE 170

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2R243 KDM4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 529 (191.3 bits), Expect = 8.1e-50, P = 8.1e-50
 Identities = 99/161 (61%), Positives = 124/161 (77%)

Query:    72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIP 131
             +IM FRPT EEFKDF+K++ Y+ESQGAH+AGLAK+IPP EW PR++ Y     I D+ IP
Sbjct:    14 KIMTFRPTMEEFKDFNKYVAYIESQGAHRAGLAKIIPPKEWKPRQT-YD---DIDDVVIP 69

Query:   132 APICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYV 191
             API QVVTG+ GL+ Q NIQK+ MTV EY  +AN  +Y TP+H D++DLERKYWKN+T+V
Sbjct:    70 APIQQVVTGQSGLFTQYNIQKKAMTVGEYRRLANSEKYCTPRHQDFDDLERKYWKNLTFV 129

Query:   192 SPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
             SPIYGAD+SGS+ D+DV  WNI  L TILD V  + G  I+
Sbjct:   130 SPIYGADISGSLYDDDVAQWNIGSLRTILDMVERECGTIIE 170

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PHR7 KDM4C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 525 (189.9 bits), Expect = 1.8e-49, P = 1.8e-49
 Identities = 96/161 (59%), Positives = 128/161 (79%)

Query:    72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIP 131
             +IM FRP+ EEF++F+K++ +MES+GAH+AGLAKVIPP EW PR+  Y     I ++ IP
Sbjct:    15 KIMTFRPSMEEFREFNKYLAFMESKGAHRAGLAKVIPPREWKPRQC-YD---DIDNLLIP 70

Query:   132 APICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYV 191
             API Q+VTG+ GL+ Q NIQK+ MTV+E+  +AN  +Y TP++ DYEDLERKYWKN+T+V
Sbjct:    71 APIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLANSGKYCTPRYLDYEDLERKYWKNLTFV 130

Query:   192 SPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
             +PIYGAD++GSI DEDV+ WNI  L T+LD V E+ GISI+
Sbjct:   131 APIYGADINGSIYDEDVDEWNIARLNTVLDVVEEECGISIE 171

GO:0050681 "androgen receptor binding" evidence=IEA

GO:0032454 "histone demethylase activity (H3-K9 specific)" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1307528 Kdm4c "lysine (K)-specific demethylase 4C" [Rattus norvegicus (taxid:10116)]

 Score = 524 (189.5 bits), Expect = 2.2e-49, P = 2.2e-49
 Identities = 96/161 (59%), Positives = 127/161 (78%)

Query:    72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIP 131
             +IM FRP+ EEF++F+K++ YMES+GAH+AGLAKVIPP EW PR+  Y     I ++ IP
Sbjct:    15 KIMTFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKPRQC-YD---DIDNLLIP 70

Query:   132 APICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYV 191
             API Q+VTG+ GL+ Q NIQK+ MTV+E+  +AN  +Y TP++ DYEDLERKYWKN+T+V
Sbjct:    71 APIQQMVTGQSGLFTQYNIQKKPMTVKEFRQLANSSKYCTPRYLDYEDLERKYWKNLTFV 130

Query:   192 SPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
             +PIYGAD++GSI DE V+ WNI  L T+LD V E+ GISI+
Sbjct:   131 APIYGADINGSIYDEGVDEWNIARLNTVLDVVEEECGISIE 171

GO:0000790 "nuclear chromatin" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0032454 "histone demethylase activity (H3-K9 specific)" evidence=ISO

GO:0033169 "histone H3-K9 demethylation" evidence=ISO

GO:0050681 "androgen receptor binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9V6L0	KDM4B_DROME	1, ., 1, 4, ., 1, 1, ., -	0.75	0.6853	0.2694	yes	N/A
Q8VCD7	KDM4C_MOUSE	1, ., 1, 4, ., 1, 1, ., -	0.5937	0.6724	0.1480	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	232
smart00545	42	smart00545, JmjN, Small domain found in the jumonj	3e-12
pfam02375	34	pfam02375, JmjN, jmjN domain	1e-11

>gnl|CDD|128818 smart00545, JmjN, Small domain found in the jumonji family of transcription factors

 Score = 59.2 bits (144), Expect = 3e-12
 Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 72  EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP 114
           EI VF PT EEFKD   +I+ +  Q A K G+ KV+PP  W P
Sbjct: 1   EIPVFYPTMEEFKDPLAYISKIRPQ-AEKYGICKVVPPKSWKP 42

To date, this domain always co-occurs with the JmjC domain (although the reverse is not true). Length = 42

>gnl|CDD|190295 pfam02375, JmjN, jmjN domain

 Score = 57.0 bits (139), Expect = 1e-11
 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 74  MVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIP 108
            VFRPT EEFKD  K+I  +   G  K G+ KV+P
Sbjct: 1   PVFRPTMEEFKDPIKYIEKIRPLGE-KYGICKVVP 34

Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
KOG0958|consensus	690		100.0
smart00545	42	JmjN Small domain found in the jumonji family of t	99.81
PF02375	34	JmjN: jmjN domain; InterPro: IPR003349 Jumonji pro	99.66
KOG1246|consensus	904		97.74

>KOG0958|consensus

Probab=100.00  E-value=2e-51  Score=401.94  Aligned_cols=164  Identities=58%  Similarity=0.973  Sum_probs=156.1

Q ss_pred             ccCCCCCCCCCCeeccChHhhhCHHHHHHHHHhhccccCCceeecCCCCCCCCCCCCccccccCcccccCCcceeeecCC
Q psy9595          63 LPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAPICQVVTGKQ  142 (232)
Q Consensus        63 ~~~~~~~~~~~PvF~PT~eEF~df~~Yi~~i~~~ga~~~GI~KIIPP~~W~p~~~~~~~~~~l~~~~I~~PI~Q~v~G~~  142 (232)
                      .++..++.++|||||||||||+||..||++|+++|+|++||+|||||++|+||..++|    +++++|++||||+++|+.
T Consensus         5 ~~s~i~ps~~I~tF~PtmeEF~dF~~yi~~IEs~G~h~aGlaKVipPkeWk~r~~~~d----i~di~I~~PiqQ~v~g~~   80 (690)
T KOG0958|consen    5 ASSEINPSDGIPTFYPTMEEFADFSAYIAYIESQGAHRAGLAKVIPPKEWKPRLMYDD----IDDIKIPAPIQQVVTGQG   80 (690)
T ss_pred             cccccCCCCCcceeCcCHHHHHhHHHHHHHHHhccchhcCeeeeeCCccCCcccccCc----hhheecChhHHHHhhccC
Confidence            3446777899999999999999999999999999998999999999999999987553    678999999999999999


Q ss_pred             ceEEEEeec-CCCCCHHHHHHHhcCCCCCCCC-CCChHHHHHHHHhhhCCCCCeeeccCCCCCCCCCCCccccCCcchHH
Q psy9595         143 GLYQQINIQ-KRQMTVREYGAMANKPRYATPK-HFDYEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTIL  220 (232)
Q Consensus       143 Gvy~q~nie-kk~yT~~eFk~lA~~~~~~~P~-~~d~~eLEr~yWk~v~~~~P~YGADv~GSlFd~~~~~WNl~~L~slL  220 (232)
                      |+|+|+|++ ++.||++||+.||++.+||+|+ ++|++|||++|||+|+|++|+||||+.||||+.++..|||++|++||
T Consensus        81 G~F~~~Ni~~~kam~v~q~r~lAns~~y~tpr~~~d~~dle~kYWKnltf~~PiYGaD~~gSi~~~~~~~WNi~~L~til  160 (690)
T KOG0958|consen   81 GLFTQYNIQDKKAMTVRQFRDLANSDKYCTPRGSQDFEDLEQKYWKNLTFDSPIYGADINGSIYDEDLDEWNIARLDTIL  160 (690)
T ss_pred             ceEEEeehhhccccChhhhhhhhhhcccCCCcccccHHHHHHHHHhcccCCCCcccccCCCccCcccccccccccccchh
Confidence            999999999 7899999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCcCC
Q psy9595         221 DYVNEDYGISID  232 (232)
Q Consensus       221 ~~l~~~~Gi~i~  232 (232)
                      |+  ++||+.|+
T Consensus       161 d~--~~~~~~i~  170 (690)
T KOG0958|consen  161 DL--EECGIIIE  170 (690)
T ss_pred             ch--hhcceeec
Confidence            99  99999986

>smart00545 JmjN Small domain found in the jumonji family of transcription factors

Probab=99.81  E-value=1.7e-20  Score=126.83  Aligned_cols=42  Identities=50%  Similarity=0.876  Sum_probs=40.2

Q ss_pred             CCCeeccChHhhhCHHHHHHHHHhhccccCCceeecCCCCCCC
Q psy9595          72 EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVP  114 (232)
Q Consensus        72 ~~PvF~PT~eEF~df~~Yi~~i~~~ga~~~GI~KIIPP~~W~p  114 (232)
                      +||||+||+|||+||+.||++|+++| ++|||||||||.+|+|
T Consensus         1 eiPvf~Pt~eEF~Dp~~yi~~i~~~~-~~yGi~KIvPP~~w~p   42 (42)
T smart00545        1 EIPVFYPTMEEFKDPLAYISKIRPQA-EKYGICKVVPPKSWKP   42 (42)
T ss_pred             CCCeEcCCHHHHHCHHHHHHHHHHHH-hhCCEEEEECCCCCCc
Confidence            69999999999999999999999998 5999999999999986

To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).

>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice []

Probab=99.66  E-value=3.7e-17  Score=106.08  Aligned_cols=34  Identities=50%  Similarity=0.854  Sum_probs=27.3

Q ss_pred             CeeccChHhhhCHHHHHHHHHhhccccCCceeecC
Q psy9595          74 MVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIP  108 (232)
Q Consensus        74 PvF~PT~eEF~df~~Yi~~i~~~ga~~~GI~KIIP  108 (232)
                      ||||||+|||+||+.||++|+++|+ ++|||||||
T Consensus         1 Pvf~Pt~eEF~dp~~yi~~i~~~g~-~~Gi~KIvP   34 (34)
T PF02375_consen    1 PVFYPTMEEFKDPIKYISSIEPEGE-KYGICKIVP   34 (34)
T ss_dssp             EEE---HHHHS-HHHHHHHHHHTTG-GGSEEEE--
T ss_pred             CcccCCHHHHhCHHHHHHHHHHHHH-HCCEEEecC
Confidence            8999999999999999999999996 999999998

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>KOG1246|consensus

Probab=97.74  E-value=3.7e-05  Score=79.72  Aligned_cols=153  Identities=20%  Similarity=0.366  Sum_probs=99.0

Q ss_pred             CCCCCeeccChHhhhCHHHHHHHHHhhccccCCceeecCCCCCCCCCCCCccccccCcccccCC-ccee-----ee---c
Q psy9595          70 KHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAP-ICQV-----VT---G  140 (232)
Q Consensus        70 ~~~~PvF~PT~eEF~df~~Yi~~i~~~ga~~~GI~KIIPP~~W~p~~~~~~~~~~l~~~~I~~P-I~Q~-----v~---G  140 (232)
                      ....+.+.+.-..|.+...|+..+...+. .+|+|.++||..|.+..+.-+... ..+-.+.+. +++.     .+   +
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~  164 (904)
T KOG1246|consen   87 SNLKPLLLSIPKNFKDKLLYISKLKLRAE-FYGICEKLPPPTSKPKEPLKGKQN-WFSSGFDQREVEFIDYPQCNTCSKG  164 (904)
T ss_pred             ccccccccccCccccchhhcccccccccc-ccccccccCCcccCCCCcCCcccc-cccCCCCCcccccccchhhhccccC
Confidence            45567788888999999999999999984 999999999999998765321100 011111111 1110     00   1


Q ss_pred             ---------------------------CCceEEE--------------Eeec--CCCCCHHHHHHHhcCCCCC---CCCC
Q psy9595         141 ---------------------------KQGLYQQ--------------INIQ--KRQMTVREYGAMANKPRYA---TPKH  174 (232)
Q Consensus       141 ---------------------------~~Gvy~q--------------~nie--kk~yT~~eFk~lA~~~~~~---~P~~  174 (232)
                                                 ..|.+.+              ..++  .+.||+..|.++|+.++..   .+.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~~~~~~~~~~~~~~~~~  244 (904)
T KOG1246|consen  165 KEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFEEYADNFKKDYFPKSKN  244 (904)
T ss_pred             CCccceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhhhHhhhhhccccccccC
Confidence                                       1111110              0112  2579999999999987532   2222


Q ss_pred             C--ChHHHHHHHHhhhCC----CCCeeeccCCCC----CCCCC--------------CCccccCCcc----hHHHHHH
Q psy9595         175 F--DYEDLERKYWKNITY----VSPIYGADVSGS----ITDED--------------VNVWNINHLG----TILDYVN  224 (232)
Q Consensus       175 ~--d~~eLEr~yWk~v~~----~~P~YGADv~GS----lFd~~--------------~~~WNl~~L~----slL~~l~  224 (232)
                      .  +.+++|++||+.+..    ..++||||+..+    .|+..              .++|||++++    ++|.++.
T Consensus       245 ~~~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~~~~~~y~~s~wnL~~i~~~~~svl~~~~  322 (904)
T KOG1246|consen  245 SPDSTEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLGSEAEKYSNSGWNLNNIPRLEGSVLSHID  322 (904)
T ss_pred             CCCchHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCCcchhhhccCcccccccccCCcccccccc
Confidence            2  267999999999975    356899999744    44431              3699999985    6676665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	232
2xml_A	348	Crystal Structure Of Human Jmjd2c Catalytic Domain		5e-54
2p5b_A	352	The Complex Structure Of Jmjd2a And Trimethylated H		3e-50
2oq6_A	381	Crystal Structure Of Jmjd2a Complexed With Histone		3e-50
2gp3_A	349	Crystal Structure Of The Catalytic Core Domain Of J		5e-50
2pxj_A	347	The Complex Structure Of Jmjd2a And Monomethylated		6e-50
2wwj_A	348	Structure Of Jmjd2a Complexed With Inhibitor 10a Le		6e-50
3dxt_A	354	Crystal Structure Of The Catalytic Core Domain Of J		1e-46
3dxu_A	337	The Crystal Structure Of Core Jmjd2d Complexed With		7e-46
4hon_A	330	Crystal Structure Of Human Jmjd2d/kdm4d In Complex		8e-46
4hoo_A	330	Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme L		8e-45
2w2i_A	358	Crystal Structure Of The Human 2-Oxoglutarate Oxyge		1e-41
3opt_A	373	Crystal Structure Of The Rph1 Catalytic Core With A		6e-16

>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain Length = 348

Iteration: 1
 Score =  207 bits (526), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 95/161 (59%), Positives = 127/161 (78%), Gaps = 4/161 (2%)
Query: 72  EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIP 131
           +IM FRP+ EEF++F+K++ YMES+GAH+AGLAKVIPP EW PR+    +D    ++ IP
Sbjct: 16  KIMTFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKPRQCYDDID----NLLIP 71
Query: 132 APICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYV 191
           API Q+VTG+ GL+ Q NIQK+ MTV+E+  +AN  +Y TP++ DYEDLERKYWKN+T+V
Sbjct: 72  APIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLANSGKYCTPRYLDYEDLERKYWKNLTFV 131
Query: 192 SPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           +PIYGAD++GSI DE V+ WNI  L T+LD V E+ GISI+
Sbjct: 132 APIYGADINGSIYDEGVDEWNIARLNTVLDVVEEECGISIE 172

>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36 Peptide Length = 352

Iteration: 1
 Score =  194 bits (494), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 95/180 (52%), Positives = 131/180 (72%), Gaps = 9/180 (5%)
Query: 53  GEVKSTIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEW 112
           G + S  +TL P  +     IM F PT EEF++FS++I Y+ESQGAH+AGLAKV+PP EW
Sbjct: 1   GSMASESETLNPSAR-----IMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEW 55
Query: 113 VPRKSGYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATP 172
            PR S   +D    D+ IPAPI Q+VTG+ GL+ Q NIQK+ MTVRE+  +AN  +Y TP
Sbjct: 56  KPRASYDDID----DLVIPAPIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTP 111
Query: 173 KHFDYEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           ++ ++E+LERKYWKN+T+  PIYGADV+G++ ++ V+ WNI  L TILD V ++ GI+I+
Sbjct: 112 RYSEFEELERKYWKNLTFNPPIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIE 171

>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3 Peptide Trimethylated At Lys9 Length = 381

Iteration: 1
 Score =  194 bits (493), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 123/160 (76%), Gaps = 4/160 (2%)
Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           IM F PT EEF++FS++I Y+ESQGAH+AGLAKV+PP EW PR S   +D    D+ IPA
Sbjct: 36  IMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDID----DLVIPA 91
Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           PI Q+VTG+ GL+ Q NIQK+ MTVRE+  +AN  +Y TP++ ++E+LERKYWKN+T+  
Sbjct: 92  PIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFNP 151
Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGADV+G++ ++ V+ WNI  L TILD V ++ GI+I+
Sbjct: 152 PIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIE 191

>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a Length = 349

Iteration: 1
 Score =  194 bits (492), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 123/160 (76%), Gaps = 4/160 (2%)
Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           IM F PT EEF++FS++I Y+ESQGAH+AGLAKV+PP EW PR S   +D    D+ IPA
Sbjct: 13  IMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDID----DLVIPA 68
Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           PI Q+VTG+ GL+ Q NIQK+ MTVRE+  +AN  +Y TP++ ++E+LERKYWKN+T+  
Sbjct: 69  PIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFNP 128
Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGADV+G++ ++ V+ WNI  L TILD V ++ GI+I+
Sbjct: 129 PIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIE 168

>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36 Peptide Length = 347

Iteration: 1
 Score =  193 bits (491), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 90/161 (55%), Positives = 123/161 (76%), Gaps = 4/161 (2%)
Query: 72  EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIP 131
            IM F PT EEF++FS++I Y+ESQGAH+AGLAKV+PP EW PR S   +D    D+ IP
Sbjct: 12  RIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDID----DLVIP 67
Query: 132 APICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYV 191
           API Q+VTG+ GL+ Q NIQK+ MTVRE+  +AN  +Y TP++ ++E+LERKYWKN+T+ 
Sbjct: 68  APIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFN 127
Query: 192 SPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
            PIYGADV+G++ ++ V+ WNI  L TILD V ++ GI+I+
Sbjct: 128 PPIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIE 168

>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a Length = 348

Iteration: 1
 Score =  193 bits (491), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 90/161 (55%), Positives = 123/161 (76%), Gaps = 4/161 (2%)
Query: 72  EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIP 131
            IM F PT EEF++FS++I Y+ESQGAH+AGLAKV+PP EW PR S   +D    D+ IP
Sbjct: 7   RIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDID----DLVIP 62
Query: 132 APICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYV 191
           API Q+VTG+ GL+ Q NIQK+ MTVRE+  +AN  +Y TP++ ++E+LERKYWKN+T+ 
Sbjct: 63  APIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFN 122
Query: 192 SPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
            PIYGADV+G++ ++ V+ WNI  L TILD V ++ GI+I+
Sbjct: 123 PPIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIE 163

>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d Length = 354

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/175 (49%), Positives = 119/175 (68%), Gaps = 4/175 (2%)
Query: 58  TIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKS 117
           T+K+     Q     IM+F PT EEF DF K+I YMESQGAH+AGLAK+IPP EW  R++
Sbjct: 3   TMKSKANCAQNPNCNIMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARET 62
Query: 118 GYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDY 177
                 +I ++ I  P+ QV +G+ G++ Q + +K+ MTV EY  +AN  +Y TP H ++
Sbjct: 63  ----YDNISEILIATPLQQVASGRAGVFTQYHKKKKAMTVGEYRHLANSKKYQTPPHQNF 118
Query: 178 EDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           EDLERKYWKN  Y SPIYGAD+SGS+ DE+   WN+ HLGTI D + ++ G+ I+
Sbjct: 119 EDLERKYWKNRIYNSPIYGADISGSLFDENTKQWNLGHLGTIQDLLEKECGVVIE 173

>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And N- Oxalylglycine Length = 337

Iteration: 1
 Score =  180 bits (456), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 84/160 (52%), Positives = 114/160 (71%), Gaps = 4/160 (2%)
Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           IM+F PT EEF DF K+I YMESQGAH+AGLAK+IPP EW  R++      +I ++ I  
Sbjct: 11  IMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARET----YDNISEILIAT 66
Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           P+ QV +G+ G++ Q + +K+ MTV EY  +AN  +Y TP H ++EDLERKYWKN  Y S
Sbjct: 67  PLQQVASGRAGVFTQYHKKKKAMTVGEYRHLANSKKYQTPPHQNFEDLERKYWKNRIYNS 126
Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGAD+SGS+ DE+   WN+ HLGTI D + ++ G+ I+
Sbjct: 127 PIYGADISGSLFDENTKQWNLGHLGTIQDLLEKECGVVIE 166

>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An H3k9me3 Peptide And 2-oxoglutarate Length = 330

Iteration: 1
 Score =  179 bits (455), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 84/160 (52%), Positives = 114/160 (71%), Gaps = 4/160 (2%)
Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           IM+F PT EEF DF K+I YMESQGAH+AGLAK+IPP EW  R++      +I ++ I  
Sbjct: 7   IMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARET----YDNISEILIAT 62
Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           P+ QV +G+ G++ Q + +K+ MTV EY  +AN  +Y TP H ++EDLERKYWKN  Y S
Sbjct: 63  PLQQVASGRAGVFTQYHKKKKAMTVGEYRHLANSKKYQTPPHQNFEDLERKYWKNRIYNS 122
Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGAD+SGS+ DE+   WN+ HLGTI D + ++ G+ I+
Sbjct: 123 PIYGADISGSLFDENTKQWNLGHLGTIQDLLEKECGVVIE 162

>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme Length = 330

Iteration: 1
 Score =  176 bits (447), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 83/160 (51%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 73  IMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPA 132
           IM+F PT EEF DF K+I YMESQGAH+AGLAK+IPP EW  R++      +I ++ I  
Sbjct: 7   IMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARET----YDNISEILIAT 62
Query: 133 PICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVS 192
           P+ QV +G+ G++ Q + +   MTV EY  +AN  +Y TP H ++EDLERKYWKN  Y S
Sbjct: 63  PLQQVASGRAGVFTQYHKKAAAMTVGEYRHLANSKKYQTPPHQNFEDLERKYWKNRIYNS 122
Query: 193 PIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
           PIYGAD+SGS+ DE+   WN+ HLGTI D + ++ G+ I+
Sbjct: 123 PIYGADISGSLFDENTKQWNLGHLGTIQDLLEKECGVVIE 162

>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase Loc390245 Length = 358

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 115/175 (65%), Gaps = 4/175 (2%)
Query: 58  TIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKS 117
           ++K++    Q   H IM F PT EEF DF+ ++ YMESQGAH+AGLAKVIPP EW  R+ 
Sbjct: 22  SMKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQ- 80
Query: 118 GYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDY 177
              +   I D+ I  P+ QV +G+ G++ Q + +K+ M V +Y  +AN  +Y TP H ++
Sbjct: 81  ---MYDDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNF 137
Query: 178 EDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISID 232
            DLE++YWK+     PIYGAD+SGS+ +E    WN+ HLGTILD + ++ G+ I+
Sbjct: 138 ADLEQRYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIE 192

>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With A-Ketoglutarate Length = 373

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 49/197 (24%)
Query: 75  VFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAPI 134
           VF+PTYE+F+DF  +   +   G  K+G+ KVIPP EW  +        ++  + I +PI
Sbjct: 16  VFKPTYEQFEDFYAYCKAINKYGM-KSGVVKVIPPKEWKDKLDLPYSAETLQKIKIKSPI 74
Query: 135 CQVVTGKQGLYQQINIQKR------------------------------------QMTVR 158
            Q ++G +GL+   N++K                                     ++ ++
Sbjct: 75  QQHISGNKGLFMVQNVEKNKTYNIIQWKDLSKDYVPPEDPKARRNSRKGSVSKSTKLKLK 134
Query: 159 EYGAMAN---KPRYATPKHFDYED---------LERKYWKNITYVSPIYGADVSGSITDE 206
            + +  N     ++ T    D  D         LE  YWK + + +P+YGAD  GSI  E
Sbjct: 135 NFESSFNIDDFEQFRTEYTIDLSDFQNTERLKFLEEYYWKTLNFTTPMYGADTPGSIFPE 194
Query: 207 DVNVWNINHLGTILDYV 223
            +NVWN+  L  ILD++
Sbjct: 195 GLNVWNVAKLPNILDHM 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
3dxt_A	354	JMJC domain-containing histone demethylation PROT;	2e-42
2ox0_A	381	JMJC domain-containing histone demethylation PROT;	2e-40
3opt_A	373	DNA damage-responsive transcriptional repressor R;	1e-31

>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 2w2i_A* Length = 354

 Score =  146 bits (369), Expect = 2e-42
 Identities = 86/175 (49%), Positives = 118/175 (67%), Gaps = 4/175 (2%)

Query: 57  STIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRK 116
            T+K+     Q     IM+F PT EEF DF K+I YMESQGAH+AGLAK+IPP EW  R+
Sbjct: 2   ETMKSKANCAQNPNCNIMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARE 61

Query: 117 SGYSLDSSIGDMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFD 176
           +  ++     ++ I  P+ QV +G+ G++ Q + +K+ MTV EY  +AN  +Y TP H +
Sbjct: 62  TYDNIS----EILIATPLQQVASGRAGVFTQYHKKKKAMTVGEYRHLANSKKYQTPPHQN 117

Query: 177 YEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISI 231
           +EDLERKYWKN  Y SPIYGAD+SGS+ DE+   WN+ HLGTI D + ++ G+ I
Sbjct: 118 FEDLERKYWKNRIYNSPIYGADISGSLFDENTKQWNLGHLGTIQDLLEKECGVVI 172

>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Length = 381

 Score =  141 bits (355), Expect = 2e-40
 Identities = 90/165 (54%), Positives = 122/165 (73%), Gaps = 4/165 (2%)

Query: 67  QERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIG 126
                 IM F PT EEF++FS++I Y+ESQGAH+AGLAKV+PP EW PR S   +D    
Sbjct: 30  LNPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDID---- 85

Query: 127 DMSIPAPICQVVTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWK 186
           D+ IPAPI Q+VTG+ GL+ Q NIQK+ MTVRE+  +AN  +Y TP++ ++E+LERKYWK
Sbjct: 86  DLVIPAPIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWK 145

Query: 187 NITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNEDYGISI 231
           N+T+  PIYGADV+G++ ++ V+ WNI  L TILD V ++ GI+I
Sbjct: 146 NLTFNPPIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITI 190

>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Length = 373

 Score =  118 bits (295), Expect = 1e-31
 Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 49/205 (23%)

Query: 72  EIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIP 131
            + VF+PTYE+F+DF  +   +   G  K+G+ KVIPP EW  +        ++  + I 
Sbjct: 13  GVPVFKPTYEQFEDFYAYCKAINKYGM-KSGVVKVIPPKEWKDKLDLPYSAETLQKIKIK 71

Query: 132 APICQVVTGKQGLYQQINIQ---------------------------------------- 151
           +PI Q ++G +GL+   N++                                        
Sbjct: 72  SPIQQHISGNKGLFMVQNVEKNKTYNIIQWKDLSKDYVPPEDPKARRNSRKGSVSKSTKL 131

Query: 152 -----KRQMTVREYGAMANKPR---YATPKHFDYEDLERKYWKNITYVSPIYGADVSGSI 203
                +    + ++     +              + LE  YWK + + +P+YGAD  GSI
Sbjct: 132 KLKNFESSFNIDDFEQFRTEYTIDLSDFQNTERLKFLEEYYWKTLNFTTPMYGADTPGSI 191

Query: 204 TDEDVNVWNINHLGTILDYVNEDYG 228
             E +NVWN+  L  ILD++     
Sbjct: 192 FPEGLNVWNVAKLPNILDHMETKVP 216

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
3dxt_A	354	JMJC domain-containing histone demethylation PROT;	100.0
3opt_A	373	DNA damage-responsive transcriptional repressor R;	100.0
2ox0_A	381	JMJC domain-containing histone demethylation PROT;	100.0

>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*

Probab=100.00  E-value=9.6e-54  Score=395.91  Aligned_cols=170  Identities=51%  Similarity=0.921  Sum_probs=155.5

Q ss_pred             ccccccCCCCCCCCCCeeccChHhhhCHHHHHHHHHhhccccCCceeecCCCCCCCCCCCCccccccCcccccCCcceee
Q psy9595          59 IKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAPICQVV  138 (232)
Q Consensus        59 ~~~~~~~~~~~~~~~PvF~PT~eEF~df~~Yi~~i~~~ga~~~GI~KIIPP~~W~p~~~~~~~~~~l~~~~I~~PI~Q~v  138 (232)
                      ++......+++.++|||||||+|||+||.+||++|+++|+|++||||||||++|++|.+..    ++++++|++||+|++
T Consensus         4 ~~~~~~~~~~~~~~ipvF~PT~eEF~df~~Yi~~ie~~Ga~~~Gi~KIIPP~~W~~r~~~~----~~~~~~i~~pi~q~~   79 (354)
T 3dxt_A            4 MKSKANCAQNPNCNIMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETYD----NISEILIATPLQQVA   79 (354)
T ss_dssp             -------CCCTTCCCEEECCCTTGGGCHHHHHHHHHHTTGGGGSEEEECCCTTCCSSSCST----TCTTCEESSCEEEEE
T ss_pred             cccCCCCCCCCCCCcceecCCHHHHhCHHHHHHHHHhccccccCcccccCcccccCccccc----chhcccccCCceeee
Confidence            4444556678899999999999999999999999999999999999999999999998633    367899999999999


Q ss_pred             ecCCceEEEEeecCCCCCHHHHHHHhcCCCCCCCCCCChHHHHHHHHhhhCCCCCeeeccCCCCCCCCCCCccccCCcch
Q psy9595         139 TGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGT  218 (232)
Q Consensus       139 ~G~~Gvy~q~niekk~yT~~eFk~lA~~~~~~~P~~~d~~eLEr~yWk~v~~~~P~YGADv~GSlFd~~~~~WNl~~L~s  218 (232)
                      +|++|+|+|+|+++|.||+.||+++|++.++++|.+.++++|||+|||++++.+|+||||+.||+|++++++|||++|++
T Consensus        80 ~g~~G~~~~~~~~~k~~t~~~f~~~a~~~~~~~p~~~~~~~lE~~fW~~~~~~~p~YgaD~~gS~F~~~~~~WNL~~L~~  159 (354)
T 3dxt_A           80 SGRAGVFTQYHKKKKAMTVGEYRHLANSKKYQTPPHQNFEDLERKYWKNRIYNSPIYGADISGSLFDENTKQWNLGHLGT  159 (354)
T ss_dssp             EEETTEEEEEEEECCCEEHHHHHHHHTSTTTSCCCCSSHHHHHHHHHHHGGGCCCEEEEEEECCCSCTTCCSSCTTSSCC
T ss_pred             cCCCceEEEeeeccCccCHHHHHHHHhhhhccCCCCCCHHHHHHHHhhhcccCCceeeecCCCcccCCCcchhhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCcCC
Q psy9595         219 ILDYVNEDYGISID  232 (232)
Q Consensus       219 lL~~l~~~~Gi~i~  232 (232)
                      ||+.|++++|+.|.
T Consensus       160 ~~~~Ll~~~~~~I~  173 (354)
T 3dxt_A          160 IQDLLEKECGVVIE  173 (354)
T ss_dssp             HHHHHHHHHCCCCC
T ss_pred             hhHHHHhhcCCCCC
Confidence            99999999887763

>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*

Probab=100.00  E-value=2.3e-50  Score=375.28  Aligned_cols=166  Identities=34%  Similarity=0.698  Sum_probs=133.9

Q ss_pred             cccccCCCCCCCCCCeeccChHhhhCHHHHHHHHHhhccccCCceeecCCCCCCCCCCCCccccccCcccccCCcceeee
Q psy9595          60 KTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAPICQVVT  139 (232)
Q Consensus        60 ~~~~~~~~~~~~~~PvF~PT~eEF~df~~Yi~~i~~~ga~~~GI~KIIPP~~W~p~~~~~~~~~~l~~~~I~~PI~Q~v~  139 (232)
                      +.+.|++++  ++|||||||||||+||..||++|+++|| ++||||||||++|++++......+.|.+++|++||+|+++
T Consensus         3 ~~~~p~~~~--~~~pVF~PT~eeF~dF~~yi~~i~~~g~-~~Gi~KVIPPkeW~~~~~~~~~~~~l~~~~i~~PI~Q~~~   79 (373)
T 3opt_A            3 KLIAPSEIV--GGVPVFKPTYEQFEDFYAYCKAINKYGM-KSGVVKVIPPKEWKDKLDLPYSAETLQKIKIKSPIQQHIS   79 (373)
T ss_dssp             ---CCCSEE--SSSEEECCCHHHHTCHHHHHHTTHHHHT-TSSEEEECCCHHHHTTSCSSCCHHHHHHCEEESCEEEEEE
T ss_pred             cccCccccc--CCCCeeCCCHHHHhCHHHHHHHHHHhcc-ccCeEEEeCchhhhhcccCCCcHhHHhcCcCCCCcEEEec
Confidence            456777775  7799999999999999999999999997 9999999999999999864433346889999999999999


Q ss_pred             cCCceEEEEeecC-CCCCHHHHHHHhcCCCCCCCCC--------------------------------------------
Q psy9595         140 GKQGLYQQINIQK-RQMTVREYGAMANKPRYATPKH--------------------------------------------  174 (232)
Q Consensus       140 G~~Gvy~q~niek-k~yT~~eFk~lA~~~~~~~P~~--------------------------------------------  174 (232)
                      |++|+|+|+|+++ |+||+.||+.||++  |++|++                                            
T Consensus        80 G~~G~~~~~nie~~r~~~~~q~k~l~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (373)
T 3opt_A           80 GNKGLFMVQNVEKNKTYNIIQWKDLSKD--YVPPEDPKARRNSRKGSVSKSTKLKLKNFESSFNIDDFEQFRTEYTIDLS  157 (373)
T ss_dssp             ESSSEEEEEEEECSCEEEHHHHHHHTTS--SCCCCC------------------------CCCCHHHHHHHTTTSSCCCT
T ss_pred             CCCceEEEeeeccccccCHHHHHHhhhh--cCCCcccccccccccccccccccccccccccccchHHHHHHHHhhccchh
Confidence            9999999999998 68999999999974  444430                                            


Q ss_pred             -C-C---hHHHHHHHHhhhCCCCCeeeccCCCCCCCCCCCccccCCcchHHHHHHhh-cCCc
Q psy9595         175 -F-D---YEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLGTILDYVNED-YGIS  230 (232)
Q Consensus       175 -~-d---~~eLEr~yWk~v~~~~P~YGADv~GSlFd~~~~~WNl~~L~slL~~l~~~-~Gi~  230 (232)
                       + +   +++||++|||+|++++|+||||+.||+|++++++|||++|++||++|+++ .||+
T Consensus       158 ~~~~~~~~~~lE~~yW~~~~~~~p~YgaD~~GS~F~~~~~~WNL~~Lp~lL~~l~~~I~GVn  219 (373)
T 3opt_A          158 DFQNTERLKFLEEYYWKTLNFTTPMYGADTPGSIFPEGLNVWNVAKLPNILDHMETKVPGVN  219 (373)
T ss_dssp             TSSCHHHHHHHHHHHHHTTTTSCCEEEEEEECCCSCTTCCSSCTTSCC--------------
T ss_pred             hccCcchHHHHHHHHHHhccCCCceEecCCCCCCcCCCCCccChhhhhhHHHHhcccCCCcc
Confidence             1 1   46899999999999999999999999999999999999999999999754 3443

>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*

Probab=100.00  E-value=2.6e-48  Score=362.70  Aligned_cols=169  Identities=53%  Similarity=0.954  Sum_probs=154.0

Q ss_pred             cccccccCCCCCCCCCCeeccChHhhhCHHHHHHHHHhhccccCCceeecCCCCCCCCCCCCccccccCcccccCCccee
Q psy9595          58 TIKTLLPVKQERKHEIMVFRPTYEEFKDFSKFITYMESQGAHKAGLAKVIPPPEWVPRKSGYSLDSSIGDMSIPAPICQV  137 (232)
Q Consensus        58 ~~~~~~~~~~~~~~~~PvF~PT~eEF~df~~Yi~~i~~~ga~~~GI~KIIPP~~W~p~~~~~~~~~~l~~~~I~~PI~Q~  137 (232)
                      .+++. .+.+++.++|||||||+|||+||++||++|+++|||++||||||||.+|+|++...    .+++++|++||+|+
T Consensus        22 ~~~~~-~~~~~~~~~iPVF~PT~EEF~Df~~YI~kIe~~gA~~~GI~KIIPP~~W~p~~~~~----~~~~~~i~~piqQ~   96 (381)
T 2ox0_A           22 SMASE-SETLNPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYD----DIDDLVIPAPIQQL   96 (381)
T ss_dssp             --------CCSTTCCCEEECCCHHHHSCHHHHHHHHHHTTGGGGSEEEECCCTTCCSCSCST----TCTTCEESSCEEEE
T ss_pred             hhccc-cCCCCCCCCCceEcCCHHHHhCHHHHHHHHHhccccccCceeecCCccCCCccccc----hhhhcccCCcceee
Confidence            34444 45677889999999999999999999999999998999999999999999998643    36779999999999


Q ss_pred             eecCCceEEEEeecCCCCCHHHHHHHhcCCCCCCCCCCChHHHHHHHHhhhCCCCCeeeccCCCCCCCCCCCccccCCcc
Q psy9595         138 VTGKQGLYQQINIQKRQMTVREYGAMANKPRYATPKHFDYEDLERKYWKNITYVSPIYGADVSGSITDEDVNVWNINHLG  217 (232)
Q Consensus       138 v~G~~Gvy~q~niekk~yT~~eFk~lA~~~~~~~P~~~d~~eLEr~yWk~v~~~~P~YGADv~GSlFd~~~~~WNl~~L~  217 (232)
                      ++|+.|+|+++|++++.||+.+|+++|++++++.|.+.++++||++|||+|++.+|+||||+.||+|+.++++|||++|+
T Consensus        97 ~~g~~g~~~~~~~~~k~~tl~~f~~~a~~~~~~~p~~~~~~~lE~~fWr~v~~~~~~YgaD~~gS~f~~~~~~WNL~~Lp  176 (381)
T 2ox0_A           97 VTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFNPPIYGADVNGTLYEKHVDEWNIGRLR  176 (381)
T ss_dssp             EEEETTEEEEEEEECCCEEHHHHHHHHHSTTTSCCCCSSHHHHHHHHHHHTTSSCCEEEEEEECCCSCTTCCSSCTTCCC
T ss_pred             ecCCCcccccccccccccCHHHHHHHhcccccCCCccCCHHHHHHHHHhhCCcCCceeecCCCcccCCCCCCCCchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhcCCcC
Q psy9595         218 TILDYVNEDYGISI  231 (232)
Q Consensus       218 slL~~l~~~~Gi~i  231 (232)
                      ++|+.|.++.|..|
T Consensus       177 ~ll~~ll~~~~~~I  190 (381)
T 2ox0_A          177 TILDLVEKESGITI  190 (381)
T ss_dssp             CGGGHHHHHHCCCC
T ss_pred             hHHHHHHHhcCCCC
Confidence            99999999888766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00