Psyllid ID: psy9621

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDRGGMAGGCC
Secondary Structure (PSIPRED)
cccccccEEEEEEEEccccccHHHHHHHHccccccccccccccEEEEEEEEEEccEEEEEEEEEccccccHHHHcccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccccHHccccccccccccccHHHHHHHHHHHcccccEEccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHHcccccccccccEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHccEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEHccccHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHccccccccccccEEcccccccccccccc
Coil and Loop (DISEMBL)
MAKKTYDFLFKLLLigdsgvgktCVLFRfsddafnttfISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGktkdtagqerFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIdehanedpqvvnSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYdktsgrdpleapdrvtidkkpdrggmaggcc
Flexible Loop (DISEMBL)
MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAfnttfistigidfkiktvDLKGKKIKLqiwdtagqerfhTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIlgktkdtagqerFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEhanedpqvvnsWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIydktsgrdpleapdrvtidkkpdrggmaggcc
Low Complexity Region (SEG)
MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDRGGMAGGCC
Disordered region (IsUnstruct)
****TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD******************************
Disordered Region (DISOPRED)
***KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE*********************AREYGVRFMETSAKANINIEKAFIELAT******************************GGCC
Disordered Region (DISEMBL)
MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPD*********
Disordered Region (DISPRO)
**KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSG**************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDRGGMAGGCC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
P22127	200	Ras-related protein Rab-1	N/A	N/A	0.782	0.99	0.610	1e-74
Q5ZIT5	200	Ras-related protein Rab-1	yes	N/A	0.782	0.99	0.6	5e-73
Q5R5U1	200	Ras-related protein Rab-1	yes	N/A	0.782	0.99	0.6	1e-72
P61027	200	Ras-related protein Rab-1	yes	N/A	0.782	0.99	0.6	1e-72
P61026	200	Ras-related protein Rab-1	yes	N/A	0.782	0.99	0.6	1e-72
P24409	200	Ras-related protein Rab-1	yes	N/A	0.782	0.99	0.596	4e-72
P35281	200	Ras-related protein Rab-1	yes	N/A	0.782	0.99	0.576	1e-68
Q5R4A3	207	Ras-related protein Rab-8	no	N/A	0.711	0.869	0.571	5e-65
P35280	207	Ras-related protein Rab-8	no	N/A	0.711	0.869	0.571	2e-64
P55258	207	Ras-related protein Rab-8	no	N/A	0.711	0.869	0.571	2e-64

>sp|P22127|RAB10_DIPOM Ras-related protein Rab-10 OS=Diplobatis ommata PE=2 SV=1

 Score =  279 bits (713), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 155/254 (61%), Positives = 167/254 (65%), Gaps = 56/254 (22%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MAKKTYD LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV+L GKKIKL
Sbjct: 1   MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKL 60

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERFHTITTSYYRGAMGIMLVYDITN KSF+NI KWLRNIDEHANEDVE+M+L
Sbjct: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLL 120

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                                                ED +V  
Sbjct: 121 GNKCDM-----------------------------------------------EDKRV-- 131

Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240
             V K +GE IARE+ +RF ETSAKANINIEKAF+ LA  I  KT    P++ PDR  +D
Sbjct: 132 --VLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDILQKT----PVKEPDRENVD 185

Query: 241 KKPDRGGMA-GGCC 253
                GG     CC
Sbjct: 186 ISTTGGGTGLKKCC 199

Discopyge ommata (taxid: 7785)

>sp|Q5ZIT5|RAB10_CHICK Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1

 Score =  274 bits (700), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 153/255 (60%), Positives = 167/255 (65%), Gaps = 57/255 (22%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MAKKTYD LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGID KIKTV+L+GKKIKL
Sbjct: 1   MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKL 60

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERFHTITTSYYRGAMGIMLVYDITN KSF+NI KWLRNIDEHANEDVE+M+L
Sbjct: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLL 120

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                                                ED +VV 
Sbjct: 121 GNKCDM-----------------------------------------------EDKRVVP 133

Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240
               K +GE IARE+G+RF ETSAKANINIEKAF+ LA  I  KT    P++ P+   +D
Sbjct: 134 ----KAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKT----PVKEPNSENVD 185

Query: 241 KKPDRG--GMAGGCC 253
                G  G    CC
Sbjct: 186 ISSGGGVTGWKSKCC 200

May be involved in vesicular trafficking and neurotransmitter release.

Gallus gallus (taxid: 9031)

>sp|Q5R5U1|RAB10_PONAB Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1

 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 153/255 (60%), Positives = 168/255 (65%), Gaps = 57/255 (22%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MAKKTYD LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV+L+GKKIKL
Sbjct: 1   MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKL 60

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERFHTITTSYYRGAMGIMLVYDITN KSF+NI KWLRNIDEHANEDVE+M+L
Sbjct: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLL 120

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                                                +D +VV 
Sbjct: 121 GNKCDM-----------------------------------------------DDKRVVP 133

Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240
               K +GE IARE+G+RF ETSAKANINIEKAF+ LA  I  KT    P++ P+   +D
Sbjct: 134 ----KGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKT----PVKEPNSENVD 185

Query: 241 KKPDRG--GMAGGCC 253
                G  G    CC
Sbjct: 186 ISSGGGVTGWKSKCC 200

May be involved in vesicular trafficking and neurotransmitter release.

Pongo abelii (taxid: 9601)

>sp|P61027|RAB10_MOUSE Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1

 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 153/255 (60%), Positives = 168/255 (65%), Gaps = 57/255 (22%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MAKKTYD LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV+L+GKKIKL
Sbjct: 1   MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKL 60

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERFHTITTSYYRGAMGIMLVYDITN KSF+NI KWLRNIDEHANEDVE+M+L
Sbjct: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLL 120

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                                                +D +VV 
Sbjct: 121 GNKCDM-----------------------------------------------DDKRVVP 133

Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240
               K +GE IARE+G+RF ETSAKANINIEKAF+ LA  I  KT    P++ P+   +D
Sbjct: 134 ----KGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKT----PVKEPNSENVD 185

Query: 241 KKPDRG--GMAGGCC 253
                G  G    CC
Sbjct: 186 ISSGGGVTGWKSKCC 200

May be involved in vesicular trafficking and neurotransmitter release.

Mus musculus (taxid: 10090)

>sp|P61026|RAB10_HUMAN Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1

 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 153/255 (60%), Positives = 168/255 (65%), Gaps = 57/255 (22%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MAKKTYD LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV+L+GKKIKL
Sbjct: 1   MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKL 60

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERFHTITTSYYRGAMGIMLVYDITN KSF+NI KWLRNIDEHANEDVE+M+L
Sbjct: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLL 120

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                                                +D +VV 
Sbjct: 121 GNKCDM-----------------------------------------------DDKRVVP 133

Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240
               K +GE IARE+G+RF ETSAKANINIEKAF+ LA  I  KT    P++ P+   +D
Sbjct: 134 ----KGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKT----PVKEPNSENVD 185

Query: 241 KKPDRG--GMAGGCC 253
                G  G    CC
Sbjct: 186 ISSGGGVTGWKSKCC 200

May be involved in vesicular trafficking and neurotransmitter release.

Homo sapiens (taxid: 9606)

>sp|P24409|RAB10_CANFA Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=1 SV=1

 Score =  271 bits (693), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 152/255 (59%), Positives = 167/255 (65%), Gaps = 57/255 (22%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MAKKTYD LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV+L+GKKIKL
Sbjct: 1   MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKL 60

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERFHTITTSYYRGAMGIMLVYDITN KSF+NI KWLRNIDEHANEDVE+M+L
Sbjct: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLL 120

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                                                +D +VV 
Sbjct: 121 GNKCDM-----------------------------------------------DDKRVVP 133

Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240
               K +GE IARE+G+RF ETSAK NINIEKAF+ LA  I  KT    P++ P+   +D
Sbjct: 134 ----KGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDILRKT----PVKEPNSENVD 185

Query: 241 KKPDRG--GMAGGCC 253
                G  G    CC
Sbjct: 186 ISSGGGVTGWKSKCC 200

May be involved in vesicular trafficking and neurotransmitter release.

Canis familiaris (taxid: 9615)

>sp|P35281|RAB10_RAT Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=1 SV=1

 Score =  259 bits (663), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 147/255 (57%), Positives = 162/255 (63%), Gaps = 57/255 (22%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MAKKTYD LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTI IDFKIKTV+L+GKKIKL
Sbjct: 1   MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKL 60

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERFHTITTSYYRGAMGIMLVYDITN KSF+NI KWLRNID+HANEDVE+M+L
Sbjct: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLL 120

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
               D                                            +H    P    
Sbjct: 121 RNKCDM-------------------------------------------DHKRVVP---- 133

Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240
               K +GE IARE+ +RF ETSAKANINIEKAF+ L   I  KT    P++ P+   +D
Sbjct: 134 ----KGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRKT----PVKEPNSENVD 185

Query: 241 KKPDRG--GMAGGCC 253
                G  G    CC
Sbjct: 186 ISSGGGVTGWKSKCC 200

May be involved in vesicular trafficking and neurotransmitter release.

Rattus norvegicus (taxid: 10116)

>sp|Q5R4A3|RAB8A_PONAB Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1

 Score =  247 bits (631), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 132/231 (57%), Positives = 152/231 (65%), Gaps = 51/231 (22%)

Query: 4   KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
           KTYD+LFKLLLIGDSGVGKTCVLFRFS+DAFN+TFISTIGIDFKI+T++L GK+IKLQIW
Sbjct: 3   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62

Query: 64  DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
           DTAGQERF TITT+YYRGAMGIMLVYDITNEKSFDNI  W+RNI+EHA+ DVEKMILG  
Sbjct: 63  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122

Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
           +D                                               N+  Q     V
Sbjct: 123 RD----------------------------------------------VNDKRQ-----V 131

Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAP 234
            K RGE +A +YG++FMETSAKANIN+E AF  LA  I  K   +    +P
Sbjct: 132 SKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSP 182

May be involved in vesicular trafficking and neurotransmitter release. Together with RAB11A, RAB3IP, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B and RAB11A participates in epithelial cell polarization.

Pongo abelii (taxid: 9601)

>sp|P35280|RAB8A_RAT Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2

 Score =  245 bits (625), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 132/231 (57%), Positives = 151/231 (65%), Gaps = 51/231 (22%)

Query: 4   KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
           KTYD+LFKLLLIGDSGVGKTCVLFRFS+DAFN+TFISTIGIDFKI+T++L GK+IKLQIW
Sbjct: 3   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62

Query: 64  DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
           DTAGQERF TITT+YYRGAMGIMLVYDITNEKSFDNI  W+RNI+EHA+ DVEKMILG  
Sbjct: 63  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122

Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
            D                                               N+  Q     V
Sbjct: 123 CD----------------------------------------------VNDKRQ-----V 131

Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAP 234
            K RGE +A +YG++FMETSAKANIN+E AF  LA  I  K   +    +P
Sbjct: 132 SKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSP 182

May be involved in vesicular trafficking and neurotransmitter release. Together with RAB11A, RAB3IP, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B and RAB11A participates in epithelial cell polarization.

Rattus norvegicus (taxid: 10116)

>sp|P55258|RAB8A_MOUSE Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2

 Score =  245 bits (625), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 132/231 (57%), Positives = 151/231 (65%), Gaps = 51/231 (22%)

Query: 4   KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
           KTYD+LFKLLLIGDSGVGKTCVLFRFS+DAFN+TFISTIGIDFKI+T++L GK+IKLQIW
Sbjct: 3   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62

Query: 64  DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
           DTAGQERF TITT+YYRGAMGIMLVYDITNEKSFDNI  W+RNI+EHA+ DVEKMILG  
Sbjct: 63  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122

Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
            D                                               N+  Q     V
Sbjct: 123 CD----------------------------------------------VNDKRQ-----V 131

Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAP 234
            K RGE +A +YG++FMETSAKANIN+E AF  LA  I  K   +    +P
Sbjct: 132 SKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSP 182

May be involved in vesicular trafficking and neurotransmitter release. Together with RAB11A, RAB3IP, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B and RAB11A participates in epithelial cell polarization.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
66518279	200	PREDICTED: ras-related protein Rab-10 is	0.790	1.0	0.636	3e-82
332031583	200	Ras-related protein Rab-10 [Acromyrmex e	0.790	1.0	0.636	3e-82
383848303	200	PREDICTED: ras-related protein Rab-10-li	0.790	1.0	0.636	4e-82
322802264	200	hypothetical protein SINV_03565 [Solenop	0.790	1.0	0.632	9e-82
307213108	200	Ras-related protein Rab-10 [Harpegnathos	0.790	1.0	0.632	9e-82
289741231	204	Rab protein 10 [Glossina morsitans morsi	0.798	0.990	0.633	5e-81
340720307	200	PREDICTED: ras-related protein Rab-10-li	0.790	1.0	0.628	1e-80
195134256	204	GI11034 [Drosophila mojavensis] gi|19390	0.798	0.990	0.633	1e-80
195398659	204	GJ15815 [Drosophila virilis] gi|19415036	0.798	0.990	0.645	1e-80
345491599	200	PREDICTED: ras-related protein Rab-10-li	0.790	1.0	0.628	1e-80

>gi|66518279|ref|XP_393723.2| PREDICTED: ras-related protein Rab-10 isoform 2 [Apis mellifera] gi|380028841|ref|XP_003698094.1| PREDICTED: ras-related protein Rab-10-like [Apis florea]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 161/253 (63%), Positives = 184/253 (72%), Gaps = 53/253 (20%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MAKKTYD LFKLLLIGDSGVGKTC+LFRFSDDAF+TTFISTIGIDFKIKTV+L+GKKIKL
Sbjct: 1   MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFSTTFISTIGIDFKIKTVELRGKKIKL 60

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK+F+NI+KWLRNIDEHANEDVEKMIL
Sbjct: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKTFENIVKWLRNIDEHANEDVEKMIL 120

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                                                ED +VV+
Sbjct: 121 GNKSDM-----------------------------------------------EDKRVVS 133

Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240
           +     RGEAIARE+G+RFMETSAKANINI++AF ELA AI +KT G++P +APDRVT+D
Sbjct: 134 T----ERGEAIAREHGIRFMETSAKANINIDRAFSELAEAILEKTHGKEPQDAPDRVTVD 189

Query: 241 KKPDRGGMAGGCC 253
           ++ +R   +  CC
Sbjct: 190 RRVERN--SNRCC 200

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031583|gb|EGI71055.1| Ras-related protein Rab-10 [Acromyrmex echinatior]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 161/253 (63%), Positives = 184/253 (72%), Gaps = 53/253 (20%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MAKKTYD LFKLLLIGDSGVGKTC+LFRFSDDAF+TTFISTIGIDFKIKTV+L+GKKIKL
Sbjct: 1   MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFSTTFISTIGIDFKIKTVELRGKKIKL 60

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK+F+NI+KWLRNIDEHANEDVEKMIL
Sbjct: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKTFENIVKWLRNIDEHANEDVEKMIL 120

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                                                E+ +VV+
Sbjct: 121 GNKSDM-----------------------------------------------EEKRVVS 133

Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240
           +     +GEAIARE+G+RFMETSAKANINI++AF ELA AI DKT GR+P +APDRVT+D
Sbjct: 134 T----EKGEAIAREHGIRFMETSAKANINIDRAFSELAEAILDKTHGREPQDAPDRVTVD 189

Query: 241 KKPDRGGMAGGCC 253
           ++ +R   +  CC
Sbjct: 190 RRVERN--SNRCC 200

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848303|ref|XP_003699791.1| PREDICTED: ras-related protein Rab-10-like isoform 1 [Megachile rotundata]

 Score =  310 bits (794), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 161/253 (63%), Positives = 184/253 (72%), Gaps = 53/253 (20%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MAKKTYD LFKLLLIGDSGVGKTC+LFRFSDDAF+TTFISTIGIDFKIKTV+L+GKKIKL
Sbjct: 1   MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFSTTFISTIGIDFKIKTVELRGKKIKL 60

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK+F+NI+KWLRNIDEHANEDVEKMIL
Sbjct: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKTFENIVKWLRNIDEHANEDVEKMIL 120

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                                                ED +VV+
Sbjct: 121 GNKSDM-----------------------------------------------EDRRVVS 133

Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240
           +     RGEAIARE+G+RFMETSAKANINI++AF ELA AI +KT G++P +APDRVT+D
Sbjct: 134 T----ERGEAIAREHGIRFMETSAKANINIDRAFSELAEAILEKTHGKEPQDAPDRVTVD 189

Query: 241 KKPDRGGMAGGCC 253
           ++ +R   +  CC
Sbjct: 190 RRVERN--SNRCC 200

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802264|gb|EFZ22660.1| hypothetical protein SINV_03565 [Solenopsis invicta]

 Score =  309 bits (791), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 160/253 (63%), Positives = 184/253 (72%), Gaps = 53/253 (20%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MAKKTYD LFKLLLIGDSGVGKTC+LFRFSDDAF+TTFISTIGIDFKIKTV+L+GKKIKL
Sbjct: 1   MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFSTTFISTIGIDFKIKTVELRGKKIKL 60

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK+F+NI+KWLRNIDEHANEDVEKMIL
Sbjct: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKTFENIVKWLRNIDEHANEDVEKMIL 120

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                                                E+ +VV+
Sbjct: 121 GNKSDM-----------------------------------------------EERRVVS 133

Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240
           +     +GEAIARE+G+RFMETSAKANINI++AF ELA AI DKT G++P +APDRVT+D
Sbjct: 134 T----EKGEAIAREHGIRFMETSAKANINIDRAFSELAEAILDKTHGKEPQDAPDRVTVD 189

Query: 241 KKPDRGGMAGGCC 253
           ++ +R   +  CC
Sbjct: 190 RRVERS--SNRCC 200

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213108|gb|EFN88630.1| Ras-related protein Rab-10 [Harpegnathos saltator]

 Score =  308 bits (790), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 160/253 (63%), Positives = 184/253 (72%), Gaps = 53/253 (20%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MAKKTYD LFKLLLIGDSGVGKTC+LFRFSD+AF+TTFISTIGIDFKIKTV+L+GKKIKL
Sbjct: 1   MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDEAFSTTFISTIGIDFKIKTVELRGKKIKL 60

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK+F+NI+KWLRNIDEHANEDVEKMIL
Sbjct: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKTFENIVKWLRNIDEHANEDVEKMIL 120

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                                                ED +VV+
Sbjct: 121 GNKSDM-----------------------------------------------EDKRVVS 133

Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240
           +     +GEAIARE+G+RFMETSAKANINI++AF ELA AI DKT G++P +APDRVT+D
Sbjct: 134 T----EKGEAIAREHGIRFMETSAKANINIDQAFSELAEAILDKTHGKEPQDAPDRVTVD 189

Query: 241 KKPDRGGMAGGCC 253
           ++ +R   +  CC
Sbjct: 190 RRVERN--SNRCC 200

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289741231|gb|ADD19363.1| Rab protein 10 [Glossina morsitans morsitans]

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 161/254 (63%), Positives = 180/254 (70%), Gaps = 52/254 (20%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MAKKTYD LFKLLLIGDSGVGKTC+LFRFSDDAF +TFISTIGIDFKIKTV+L+GKKIKL
Sbjct: 1   MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKL 60

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF+NI+KWLRNIDEHANEDVEKMIL
Sbjct: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDVEKMIL 120

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D A                                               D +VV+
Sbjct: 121 GNKCDMA-----------------------------------------------DKRVVS 133

Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240
               K RGEAIARE+G+RFMETSAK+NINIE+AF ELA AI DKT+GR+  E P+RV +D
Sbjct: 134 ----KERGEAIAREHGIRFMETSAKSNINIERAFCELAEAILDKTAGRESAENPERVVVD 189

Query: 241 KKPDRGGMA-GGCC 253
           ++ +    A   CC
Sbjct: 190 RRNNEKAPAYKSCC 203

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720307|ref|XP_003398582.1| PREDICTED: ras-related protein Rab-10-like isoform 1 [Bombus terrestris]

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 159/253 (62%), Positives = 183/253 (72%), Gaps = 53/253 (20%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MAKKTYD LFKLLLIGDSGVGKTC+LFRFSDDAF+TTFISTIGIDFKIKTV+L+GKKIKL
Sbjct: 1   MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFSTTFISTIGIDFKIKTVELRGKKIKL 60

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK+F+NI+KWLRNIDEHANEDVEKMIL
Sbjct: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKTFENIVKWLRNIDEHANEDVEKMIL 120

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                                                ED +VV+
Sbjct: 121 GNKSDM-----------------------------------------------EDKRVVS 133

Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240
           +     RGEAIARE+G+RFMETSAKA+INI++AF EL  AI +KT G++P +APDRVT+D
Sbjct: 134 T----ARGEAIAREHGIRFMETSAKADINIDRAFNELTEAILEKTHGKEPQDAPDRVTVD 189

Query: 241 KKPDRGGMAGGCC 253
           ++ +R   +  CC
Sbjct: 190 RRVERN--SNRCC 200

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195134256|ref|XP_002011553.1| GI11034 [Drosophila mojavensis] gi|193906676|gb|EDW05543.1| GI11034 [Drosophila mojavensis]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/254 (63%), Positives = 178/254 (70%), Gaps = 52/254 (20%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MAKKTYD LFKLLLIGDSGVGKTC+LFRFSDDAF +TFISTIGIDFKIKTV+L+GKKIKL
Sbjct: 1   MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKL 60

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF+NI+KWLRNIDEHANEDVEKMIL
Sbjct: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDVEKMIL 120

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D +                                               D +VV+
Sbjct: 121 GNKCDMS-----------------------------------------------DKRVVS 133

Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240
               K RGEAIARE+ +RFMETSAK+NINIE+AF ELA AI DKTSGR+  E P+RV ID
Sbjct: 134 ----KERGEAIAREHSIRFMETSAKSNINIERAFCELAEAILDKTSGRESAENPERVVID 189

Query: 241 K-KPDRGGMAGGCC 253
           +   D+      CC
Sbjct: 190 RGNSDKATSYSKCC 203

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195398659|ref|XP_002057938.1| GJ15815 [Drosophila virilis] gi|194150362|gb|EDW66046.1| GJ15815 [Drosophila virilis]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/254 (64%), Positives = 180/254 (70%), Gaps = 52/254 (20%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MAKKTYD LFKLLLIGDSGVGKTC+LFRFSDDAF +TFISTIGIDFKIKTV+L+GKKIKL
Sbjct: 1   MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKL 60

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF+NI+KWLRNIDEHANEDVEKMIL
Sbjct: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDVEKMIL 120

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                  MG                             D +VV+
Sbjct: 121 GNKCD------------------MG-----------------------------DKRVVS 133

Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240
               K RGEAIARE+G+RFMETSAK+NINIE+AF ELA AI DKTSGR+  E P+RV ID
Sbjct: 134 ----KERGEAIAREHGIRFMETSAKSNINIERAFCELAEAILDKTSGRESAENPERVVID 189

Query: 241 K-KPDRGGMAGGCC 253
           +   D+      CC
Sbjct: 190 RANSDKAPGYNKCC 203

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491599|ref|XP_001606644.2| PREDICTED: ras-related protein Rab-10-like [Nasonia vitripennis]

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 159/253 (62%), Positives = 182/253 (71%), Gaps = 53/253 (20%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MAKKTYD LFKLLLIGDSGVGKTC+LFRFSDDAF+TTFISTIGIDFKIKTV+L+GKKIKL
Sbjct: 1   MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFSTTFISTIGIDFKIKTVELRGKKIKL 60

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK+F+NI+ WLRNIDEHANE+VEKMIL
Sbjct: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKTFENIVNWLRNIDEHANENVEKMIL 120

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                                                ED + V+
Sbjct: 121 GNKSDM-----------------------------------------------EDRREVS 133

Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID 240
           +     RGEAIARE+G+RFMETSAKANINI++AF ELA AI DKT G++P +APDRVT+D
Sbjct: 134 T----ERGEAIAREHGIRFMETSAKANINIDRAFRELAEAILDKTHGKEPQDAPDRVTVD 189

Query: 241 KKPDRGGMAGGCC 253
           ++ +R   +  CC
Sbjct: 190 RRVER--TSSRCC 200

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
FB|FBgn0015789	204	Rab10 "Rab10" [Drosophila mela	0.494	0.612	0.912	1.5e-58
ZFIN|ZDB-GENE-040718-304	201	rab10 "RAB10, member RAS oncog	0.494	0.621	0.912	4e-58
UNIPROTKB|A6QLS9	200	RAB10 "RAB10 protein" [Bos tau	0.494	0.625	0.912	5.1e-58
UNIPROTKB|F2Z4P9	200	RAB10 "Ras-related protein Rab	0.494	0.625	0.912	5.1e-58
UNIPROTKB|P61026	200	RAB10 "Ras-related protein Rab	0.494	0.625	0.912	5.1e-58
UNIPROTKB|F2Z5F2	200	RAB10 "Uncharacterized protein	0.494	0.625	0.912	5.1e-58
UNIPROTKB|Q5R5U1	200	RAB10 "Ras-related protein Rab	0.494	0.625	0.912	5.1e-58
MGI|MGI:105066	200	Rab10 "RAB10, member RAS oncog	0.494	0.625	0.912	5.1e-58
UNIPROTKB|P24409	200	RAB10 "Ras-related protein Rab	0.494	0.625	0.912	5.1e-58
UNIPROTKB|J9NUV0	209	RAB10 "Ras-related protein Rab	0.494	0.598	0.912	5.1e-58

FB|FBgn0015789 Rab10 "Rab10" [Drosophila melanogaster (taxid:7227)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 114/125 (91%), Positives = 120/125 (96%)

Query:     1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
             MAKKTYD LFKLLLIGDSGVGKTC+LFRFSDDAF +TFISTIGIDFKIKTV+L+GKKIKL
Sbjct:     1 MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKL 60

Query:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
             QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF+NI+KWLRNIDEHANEDVEKMIL
Sbjct:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDVEKMIL 120

Query:   121 GKTKD 125
             G   D
Sbjct:   121 GNKCD 125

GO:0003924 "GTPase activity" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0031982 "vesicle" evidence=ISS

GO:0046331 "lateral inhibition" evidence=IMP

ZFIN|ZDB-GENE-040718-304 rab10 "RAB10, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 114/125 (91%), Positives = 119/125 (95%)

Query:     1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
             MAKKTYD LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV+L+GKKIKL
Sbjct:     1 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKL 60

Query:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
             QIWDTAGQERFHTITTSYYRGAMGIMLVYDITN KSF+NI KWLRNIDEHANEDVE+M+L
Sbjct:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLL 120

Query:   121 GKTKD 125
             G   D
Sbjct:   121 GNKCD 125

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|A6QLS9 RAB10 "RAB10 protein" [Bos taurus (taxid:9913)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 114/125 (91%), Positives = 119/125 (95%)

Query:     1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
             MAKKTYD LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV+L+GKKIKL
Sbjct:     1 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKL 60

Query:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
             QIWDTAGQERFHTITTSYYRGAMGIMLVYDITN KSF+NI KWLRNIDEHANEDVE+M+L
Sbjct:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLL 120

Query:   121 GKTKD 125
             G   D
Sbjct:   121 GNKCD 125

GO:0072659 "protein localization to plasma membrane" evidence=IEA

GO:0072372 "primary cilium" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0032593 "insulin-responsive compartment" evidence=IEA

GO:0031489 "myosin V binding" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F2Z4P9 RAB10 "Ras-related protein Rab-10" [Canis lupus familiaris (taxid:9615)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 114/125 (91%), Positives = 119/125 (95%)

Query:     1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
             MAKKTYD LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV+L+GKKIKL
Sbjct:     1 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKL 60

Query:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
             QIWDTAGQERFHTITTSYYRGAMGIMLVYDITN KSF+NI KWLRNIDEHANEDVE+M+L
Sbjct:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLL 120

Query:   121 GKTKD 125
             G   D
Sbjct:   121 GNKCD 125

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61026 RAB10 "Ras-related protein Rab-10" [Homo sapiens (taxid:9606)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 114/125 (91%), Positives = 119/125 (95%)

Query:     1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
             MAKKTYD LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV+L+GKKIKL
Sbjct:     1 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKL 60

Query:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
             QIWDTAGQERFHTITTSYYRGAMGIMLVYDITN KSF+NI KWLRNIDEHANEDVE+M+L
Sbjct:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLL 120

Query:   121 GKTKD 125
             G   D
Sbjct:   121 GNKCD 125

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0097051 "establishment of protein localization to endoplasmic reticulum membrane" evidence=IMP

GO:0072372 "primary cilium" evidence=IDA

GO:0016197 "endosomal transport" evidence=IMP

GO:0055037 "recycling endosome" evidence=IDA

GO:0061467 "basolateral protein localization" evidence=ISS

GO:0005768 "endosome" evidence=IDA

GO:0032593 "insulin-responsive compartment" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0031489 "myosin V binding" evidence=IPI

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0030859 "polarized epithelial cell differentiation" evidence=ISS

GO:0043001 "Golgi to plasma membrane protein transport" evidence=ISS

GO:0000145 "exocyst" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0032869 "cellular response to insulin stimulus" evidence=ISS

GO:0072659 "protein localization to plasma membrane" evidence=ISS

GO:0006893 "Golgi to plasma membrane transport" evidence=ISS

GO:0007409 "axonogenesis" evidence=ISS

GO:0045200 "establishment of neuroblast polarity" evidence=ISS

GO:0005525 "GTP binding" evidence=IDA

GO:0019003 "GDP binding" evidence=IDA

UNIPROTKB|F2Z5F2 RAB10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 114/125 (91%), Positives = 119/125 (95%)

Query:     1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
             MAKKTYD LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV+L+GKKIKL
Sbjct:     1 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKL 60

Query:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
             QIWDTAGQERFHTITTSYYRGAMGIMLVYDITN KSF+NI KWLRNIDEHANEDVE+M+L
Sbjct:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLL 120

Query:   121 GKTKD 125
             G   D
Sbjct:   121 GNKCD 125

GO:0072659 "protein localization to plasma membrane" evidence=IEA

GO:0072372 "primary cilium" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0032593 "insulin-responsive compartment" evidence=IEA

GO:0031489 "myosin V binding" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q5R5U1 RAB10 "Ras-related protein Rab-10" [Pongo abelii (taxid:9601)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 114/125 (91%), Positives = 119/125 (95%)

Query:     1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
             MAKKTYD LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV+L+GKKIKL
Sbjct:     1 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKL 60

Query:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
             QIWDTAGQERFHTITTSYYRGAMGIMLVYDITN KSF+NI KWLRNIDEHANEDVE+M+L
Sbjct:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLL 120

Query:   121 GKTKD 125
             G   D
Sbjct:   121 GNKCD 125

GO:0005525 "GTP binding" evidence=ISS

GO:0005768 "endosome" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0006893 "Golgi to plasma membrane transport" evidence=ISS

GO:0007409 "axonogenesis" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0016197 "endosomal transport" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0030859 "polarized epithelial cell differentiation" evidence=ISS

GO:0032593 "insulin-responsive compartment" evidence=ISS

GO:0032869 "cellular response to insulin stimulus" evidence=ISS

GO:0043001 "Golgi to plasma membrane protein transport" evidence=ISS

GO:0045200 "establishment of neuroblast polarity" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

GO:0061467 "basolateral protein localization" evidence=ISS

GO:0071782 "endoplasmic reticulum tubular network" evidence=ISS

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=ISS

GO:0072372 "primary cilium" evidence=ISS

GO:0072659 "protein localization to plasma membrane" evidence=ISS

GO:0097051 "establishment of protein localization to endoplasmic reticulum membrane" evidence=ISS

GO:0000145 "exocyst" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

MGI|MGI:105066 Rab10 "RAB10, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 114/125 (91%), Positives = 119/125 (95%)

Query:     1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
             MAKKTYD LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV+L+GKKIKL
Sbjct:     1 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKL 60

Query:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
             QIWDTAGQERFHTITTSYYRGAMGIMLVYDITN KSF+NI KWLRNIDEHANEDVE+M+L
Sbjct:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLL 120

Query:   121 GKTKD 125
             G   D
Sbjct:   121 GNKCD 125

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=ISO

GO:0005768 "endosome" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0006893 "Golgi to plasma membrane transport" evidence=ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007409 "axonogenesis" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=IMP

GO:0016197 "endosomal transport" evidence=ISO

GO:0019003 "GDP binding" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0031489 "myosin V binding" evidence=ISO

GO:0032593 "insulin-responsive compartment" evidence=ISO

GO:0032869 "cellular response to insulin stimulus" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

GO:0045200 "establishment of neuroblast polarity" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0055037 "recycling endosome" evidence=ISO

GO:0071782 "endoplasmic reticulum tubular network" evidence=ISO

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=ISO

GO:0072372 "primary cilium" evidence=ISO;IDA

GO:0072659 "protein localization to plasma membrane" evidence=IMP

GO:0097051 "establishment of protein localization to endoplasmic reticulum membrane" evidence=ISO

UNIPROTKB|P24409 RAB10 "Ras-related protein Rab-10" [Canis lupus familiaris (taxid:9615)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 114/125 (91%), Positives = 119/125 (95%)

Query:     1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
             MAKKTYD LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV+L+GKKIKL
Sbjct:     1 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKL 60

Query:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
             QIWDTAGQERFHTITTSYYRGAMGIMLVYDITN KSF+NI KWLRNIDEHANEDVE+M+L
Sbjct:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLL 120

Query:   121 GKTKD 125
             G   D
Sbjct:   121 GNKCD 125

GO:0005515 "protein binding" evidence=IPI

GO:0019003 "GDP binding" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0045200 "establishment of neuroblast polarity" evidence=ISS

GO:0007409 "axonogenesis" evidence=ISS

GO:0006893 "Golgi to plasma membrane transport" evidence=ISS

GO:0072659 "protein localization to plasma membrane" evidence=ISS

GO:0032869 "cellular response to insulin stimulus" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0032593 "insulin-responsive compartment" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005768 "endosome" evidence=ISS

GO:0016197 "endosomal transport" evidence=ISS

GO:0030859 "polarized epithelial cell differentiation" evidence=IMP

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0055037 "recycling endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0000145 "exocyst" evidence=IDA

GO:0072372 "primary cilium" evidence=IDA

GO:0061467 "basolateral protein localization" evidence=IMP

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|J9NUV0 RAB10 "Ras-related protein Rab-10" [Canis lupus familiaris (taxid:9615)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 114/125 (91%), Positives = 119/125 (95%)

Query:     1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
             MAKKTYD LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV+L+GKKIKL
Sbjct:     1 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKL 60

Query:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
             QIWDTAGQERFHTITTSYYRGAMGIMLVYDITN KSF+NI KWLRNIDEHANEDVE+M+L
Sbjct:    61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLL 120

Query:   121 GKTKD 125
             G   D
Sbjct:   121 GNKCD 125

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZIT5	RAB10_CHICK	No assigned EC number	0.6	0.7826	0.99	yes	N/A
P41924	RYL1_YARLI	No assigned EC number	0.4396	0.7035	0.8768	yes	N/A
P61027	RAB10_MOUSE	No assigned EC number	0.6	0.7826	0.99	yes	N/A
P61026	RAB10_HUMAN	No assigned EC number	0.6	0.7826	0.99	yes	N/A
P20791	RAB8B_DICDI	No assigned EC number	0.4953	0.6521	0.8128	yes	N/A
O24466	RAE1A_ARATH	No assigned EC number	0.4387	0.7826	0.9166	yes	N/A
P35281	RAB10_RAT	No assigned EC number	0.5764	0.7826	0.99	yes	N/A
P17609	YPT2_SCHPO	No assigned EC number	0.4615	0.6719	0.85	yes	N/A
Q5R5U1	RAB10_PONAB	No assigned EC number	0.6	0.7826	0.99	yes	N/A
O42819	SEC4_CANGA	No assigned EC number	0.4310	0.7075	0.8325	yes	N/A
P24409	RAB10_CANFA	No assigned EC number	0.5960	0.7826	0.99	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	253
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-97
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	8e-70
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-69
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-67
pfam00071	162	pfam00071, Ras, Ras family	2e-63
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	3e-58
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-57
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	7e-54
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	8e-54
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-51
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	4e-51
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	9e-51
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	7e-50
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-49
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	3e-49
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-45
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-44
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	6e-44
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	8e-44
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-43
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	5e-43
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-42
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	4e-42
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	5e-41
pfam00071	162	pfam00071, Ras, Ras family	1e-40
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-39
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	3e-39
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	5e-39
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-38
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	4e-36
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	3e-34
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	4e-31
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-27
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-26
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	3e-26
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	4e-26
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	6e-25
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	7e-25
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	1e-24
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-24
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-24
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	3e-24
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	4e-24
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-23
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	2e-22
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-21
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	3e-21
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	4e-21
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	3e-20
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	7e-20
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	8e-20
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-19
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	6e-19
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-18
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	7e-18
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-17
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-17
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	2e-17
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-17
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	4e-17
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-16
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	4e-16
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-15
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-15
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-15
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	1e-15
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	3e-15
pfam08477	116	pfam08477, Miro, Miro-like protein	7e-15
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	6e-14
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	7e-14
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-13
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	2e-13
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-13
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-13
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	3e-13
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	3e-13
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	3e-13
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	9e-13
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-12
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	4e-12
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	6e-12
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	7e-12
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-11
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	4e-11
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	7e-11
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	1e-10
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-10
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	5e-10
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	8e-10
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-09
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	3e-09
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	3e-09
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	4e-09
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	6e-09
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	8e-09
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-08
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-08
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	1e-08
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	3e-08
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	3e-08
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	8e-08
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	9e-08
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-07
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	1e-07
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	5e-07
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	6e-07
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	2e-06
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	3e-06
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	3e-06
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	3e-06
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	4e-06
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	4e-06
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	6e-06
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	7e-06
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	7e-06
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	1e-05
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-05
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	3e-05
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-04
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	2e-04
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	3e-04
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	0.001
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	0.001
pfam08477	116	pfam08477, Miro, Miro-like protein	0.002
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	0.003

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  282 bits (723), Expect = 1e-97
 Identities = 122/218 (55%), Positives = 149/218 (68%), Gaps = 51/218 (23%)

Query: 7   DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66
           D+LFKLLLIGDSGVGK+C+L RFS+D+FN +FISTIGIDFKI+T++L GKKIKLQIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 67  GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT 126
           GQERF TITTSYYRGAMGI+LVYDIT+EKSF+NI  W+RNIDEHA+EDVE+M++G   D 
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDM 120

Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
                                                          E+ +VV+    K 
Sbjct: 121 -----------------------------------------------EEKRVVS----KE 129

Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
            GEA+AREYG++F+ETSAKANIN+E+AF+ LA  I  K
Sbjct: 130 EGEALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  211 bits (540), Expect = 8e-70
 Identities = 94/217 (43%), Positives = 132/217 (60%), Gaps = 51/217 (23%)

Query: 8   FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
           +LFKLLLIGDSGVGK+C+L RF+DD +  ++ISTIG+DFKI+T++L GK +KLQIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 68  QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127
           QERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G   D  
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
            ++                  V D T  K F                             
Sbjct: 121 DKK------------------VVDYTEAKEF----------------------------- 133

Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
               A E G+ F+ETSAK   N+E+AF+ +A  I  +
Sbjct: 134 ----ADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  209 bits (535), Expect = 3e-69
 Identities = 82/210 (39%), Positives = 117/210 (55%), Gaps = 51/210 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FK++LIGDSGVGKT +L RF D+ F+  + STIG+DFK KT+++ GKK+KLQIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           RF +IT+SYYRGA G +LVYD+TN +SF+N+ KWL  + E+A  ++  +++G   D   +
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                 ++ E+                                +
Sbjct: 121 --------------------RQVSTEE-------------------------------AQ 129

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELAT 219
             A+E G+ F ETSAK   N+++AF  LA 
Sbjct: 130 QFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  205 bits (525), Expect = 1e-67
 Identities = 66/112 (58%), Positives = 93/112 (83%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FK++LIGDSGVGK+ +L RF+D  F+  + STIG+DFK KT+++ GK++KLQIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           RF +IT+SYYRGA+G +LVYDITN +SF+N+  WL+ + E+A+ +V  M++G
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVG 112

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  195 bits (498), Expect = 2e-63
 Identities = 62/120 (51%), Positives = 84/120 (70%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+L+GD GVGK+ +L RF+ + F   +I TIG+DF  KT+++ GK +KLQIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
           F  +   YYRGA G +LVYDIT+  SF+N+ KWL  I  HA+E+V  +++G   D   Q 
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  181 bits (463), Expect = 3e-58
 Identities = 81/216 (37%), Positives = 121/216 (56%), Gaps = 51/216 (23%)

Query: 7   DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66
           D+LFK++LIGDSGVGK+ +L RF+ + FN    STIG++F  +T+ + GK IK QIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 67  GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT 126
           GQER+  IT++YYRGA+G +LVYDIT + +F+N+ +WL+ + +HA+ ++  M++G   D 
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSD- 119

Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
                                              L+ LR +     E+           
Sbjct: 120 -----------------------------------LRHLRAV---PTEE----------- 130

Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
             +A A + G+ F+ETSA    N+E+AF +L T IY
Sbjct: 131 -AKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  180 bits (458), Expect = 1e-57
 Identities = 85/213 (39%), Positives = 116/213 (54%), Gaps = 53/213 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K+LLIGDSGVGK+ +L RF+DD F+    STIG+DFK+KTV + GKK+KL IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAG 128
           RF T+T+SYYRGA G++LVYD+T   +FDN+  WL  +D ++ N D  KM++G   D   
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
           +E                                                    V +  G
Sbjct: 121 RE----------------------------------------------------VTREEG 128

Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAI 221
           +  AR++ + F+ETSAK  I +++AF EL   I
Sbjct: 129 QKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  172 bits (437), Expect = 7e-54
 Identities = 85/251 (33%), Positives = 131/251 (52%), Gaps = 54/251 (21%)

Query: 4   KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
           + YD LFKLL+IGDSGVGK+ +L RF+D+ F+ ++I+TIG+DFKI+TV++ G+++KLQIW
Sbjct: 1   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIW 60

Query: 64  DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
           DTAGQERF TIT++YYRG  G+++VYD+TN +SF N+ +WL+ I+++  +DV K+++G  
Sbjct: 61  DTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVG-- 117

Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
                                                          + N+DP      V
Sbjct: 118 -----------------------------------------------NKNDDP---ERKV 127

Query: 184 CKHRGEA-IAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKK 242
            +       A + G+   ETSAK NIN+E+ F  +   +          +   +     K
Sbjct: 128 VETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVK 187

Query: 243 PDRGGMAGGCC 253
             +       C
Sbjct: 188 LPKNSKRKKRC 198

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  170 bits (433), Expect = 8e-54
 Identities = 84/209 (40%), Positives = 123/209 (58%), Gaps = 51/209 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           F+LLLIGDSGVGKTC+L RF+D+ F+++ ISTIG+DFK+KT+++ G K+++QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           R+ TIT  YYR A GI LVYDI++E+S+ +I+KW+ ++DE+A E V+K+++G   D   +
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
            +                                                   V   +G 
Sbjct: 121 RQ---------------------------------------------------VGDEQGN 129

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELA 218
            +A+EYG+ F ETSA  N NI+++F  L 
Sbjct: 130 KLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  165 bits (419), Expect = 1e-51
 Identities = 87/216 (40%), Positives = 121/216 (56%), Gaps = 51/216 (23%)

Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           +FKLL+IG+S VGKT  LFR++DD+F + F+ST+GIDFK+KTV    K+IKLQIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
           ER+ TITT+YYRGAMG +L+YDITNE+SF+ +  W   I  ++ ++ + +++G   D   
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM-- 118

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                                        ED +VV++     RG
Sbjct: 119 ---------------------------------------------EDERVVSA----ERG 129

Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
             +A + G  F E SAK NIN+++ F  L   I DK
Sbjct: 130 RQLADQLGFEFFEASAKENINVKQVFERLVDIICDK 165

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  164 bits (416), Expect = 4e-51
 Identities = 76/213 (35%), Positives = 113/213 (53%), Gaps = 50/213 (23%)

Query: 7   DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66
           DFLFK++LIGDS VGKTCV+ RF    F+    +TIG+DF +KT++++GK++KLQIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 67  GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT 126
           GQERF TIT SYYR A G ++ YDIT   SF+++  W+  ++++   +V  +++G   D 
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
             Q                                    R +     E+       + +H
Sbjct: 121 EEQ------------------------------------REVLF---EEACT----LAEH 137

Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELAT 219
            G           +ETSAK + N+E+AF+ +AT
Sbjct: 138 YGILAV-------LETSAKESSNVEEAFLLMAT 163

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  163 bits (414), Expect = 9e-51
 Identities = 84/219 (38%), Positives = 117/219 (53%), Gaps = 51/219 (23%)

Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           Y +LFK ++IGD+GVGK+C+L +F+D  F      TIG++F  + + + GK+IKLQIWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQE F +IT SYYRGA G +LVYDIT  ++F+++  WL +  +H+N             
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNS------------ 108

Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                             M IML+ +  +       L+  R +     E           
Sbjct: 109 -----------------NMTIMLIGNKCD-------LESRREVSYEEGE----------- 133

Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
               A ARE+G+ FMETSAK   N+E+AFI  A  IYDK
Sbjct: 134 ----AFAREHGLIFMETSAKTASNVEEAFINTAKEIYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  162 bits (412), Expect = 7e-50
 Identities = 93/258 (36%), Positives = 134/258 (51%), Gaps = 62/258 (24%)

Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFK++LIGDSGVGK+ +L RF+ + F     STIG++F  +T+ ++GK +K QIWDT
Sbjct: 9   YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDT 68

Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQER+  IT++YYRGA+G +LVYDIT  ++FDN+ +WLR + +HA+ ++  M+ G   D
Sbjct: 69  AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSD 128

Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                               L  LR++ E   ED          
Sbjct: 129 ------------------------------------LNHLRSVAE---ED---------- 139

Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDR--------- 236
             G+A+A + G+ F+ETSA    N+EKAF  +   IY   S +  L A +          
Sbjct: 140 --GQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIIS-KKALAAQEAAANSGLPGQ 196

Query: 237 -VTIDKKPDRGGMAGGCC 253
             TI+     G    GCC
Sbjct: 197 GTTINVADTSGNNKRGCC 214

Length = 216

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  161 bits (408), Expect = 2e-49
 Identities = 82/220 (37%), Positives = 116/220 (52%), Gaps = 51/220 (23%)

Query: 5   TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
           +Y +LFK ++IGD+GVGK+C+L +F+D  F      TIG++F  + + +  K IKLQIWD
Sbjct: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61

Query: 65  TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK 124
           TAGQE F +IT SYYRGA G +LVYDIT  ++F+++  WL +  +HAN ++  M++G   
Sbjct: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKC 121

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
           D A            +R A                                       V 
Sbjct: 122 DLA------------HRRA---------------------------------------VS 130

Query: 185 KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
              GE  A+E+G+ FME SAK   N+E+AFI+ A  IY K
Sbjct: 131 TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKK 170

Length = 210

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  159 bits (403), Expect = 3e-49
 Identities = 83/214 (38%), Positives = 117/214 (54%), Gaps = 51/214 (23%)

Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YDFLFK++LIG++GVGKTC++ RF+   F     +TIG+DF IKTV++KG+KIKLQIWDT
Sbjct: 4   YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDT 63

Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQERF +IT SYYR A  ++L YDIT E+SF  + +WLR I+++AN  V  +++G   D
Sbjct: 64  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKID 123

Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
            A +                                                     V +
Sbjct: 124 LAERRE---------------------------------------------------VSQ 132

Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELAT 219
            R E  +    + ++ETSAK + N+EK F++LA 
Sbjct: 133 QRAEEFSDAQDMYYLETSAKESDNVEKLFLDLAC 166

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  149 bits (379), Expect = 2e-45
 Identities = 71/218 (32%), Positives = 111/218 (50%), Gaps = 60/218 (27%)

Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDL----------KG 55
           YD+L KLL +GDSGVGKT  L+R++D+ FN  FI+T+GIDF+ K V            K 
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 56  KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDV 115
            ++ LQ+WDTAGQERF ++TT+++R AMG +L++D+T+E+SF N+  W+  +  HA  + 
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCEN 120

Query: 116 EKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED 175
             ++L   K                          D+ +++                   
Sbjct: 121 PDIVLIGNK-------------------------ADLPDQRE------------------ 137

Query: 176 PQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKA 213
                  V + +   +A +YG+ + ETSA    N+EKA
Sbjct: 138 -------VSERQARELADKYGIPYFETSAATGQNVEKA 168

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  148 bits (374), Expect = 2e-44
 Identities = 65/115 (56%), Positives = 95/115 (82%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           ++++IG  GVGKT ++ RF+DD F     ST+G+DFKIKTV+L+GKKI+LQIWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           F++IT++YYR A GI+LVYDIT +++FD++ KW++ ID++A+ED E +++G   D
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 116

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  145 bits (368), Expect = 6e-44
 Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 51/213 (23%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GDS VGK+ ++ RF  + F+    STIG  F  +TV+L    +K +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           R+ ++   YYRGA   ++VYDIT+E+SF+    W++ + EH   ++   + G   D    
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKAD---- 117

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                              L +  + + E+             +
Sbjct: 118 -----------------------------------LESKRQVSTEE------------AQ 130

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIY 222
             A E G+ FMETSAK   N+ + F E+A  + 
Sbjct: 131 EYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  146 bits (369), Expect = 8e-44
 Identities = 68/121 (56%), Positives = 89/121 (73%), Gaps = 1/121 (0%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           FK++L+GDSGVGKTC+L RF D AF   +FI+T+GI F  K V + G K+KLQIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
           ERF ++T +YYR A  ++L+YD+TN+ SFDNI  WL  I E+A  DV  M+LG   D +G
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 129 Q 129
           +
Sbjct: 121 E 121

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  144 bits (366), Expect = 1e-43
 Identities = 52/110 (47%), Positives = 72/110 (65%), Gaps = 10/110 (9%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQERF +IT+SYYRGA+G +LVYDITN +SF+N+  WL+ + E+A+ +  ++     
Sbjct: 55  DTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNK 114

Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
                   V +   EA A E+G+ F ETSAK N N+E+AF ELA  I  +
Sbjct: 115 SDLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  144 bits (365), Expect = 5e-43
 Identities = 89/253 (35%), Positives = 129/253 (50%), Gaps = 56/253 (22%)

Query: 5   TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
            YD  FK+LLIGDSGVGK+ +L  F   +       TIG+DFKIK + + GK++KL IWD
Sbjct: 10  GYDLSFKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGGKRLKLTIWD 68

Query: 65  TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK-WLRNIDEHA-NEDVEKMILGK 122
           TAGQERF T+T+SYYR A GI+LVYD+T  ++F N+   W + ++ ++ N+D  KM++G 
Sbjct: 69  TAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGN 128

Query: 123 TKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW 182
             D   +                     D++ E+                          
Sbjct: 129 KVDRESER--------------------DVSREE-------------------------- 142

Query: 183 VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS-GRDPLEAPDRVTIDK 241
                G A+A+E+G  F+E SAK   N+E+ F ELA  I +  S   +   A  R  + +
Sbjct: 143 -----GMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSLLEEGSTAVKRNILKQ 197

Query: 242 KPD-RGGMAGGCC 253
           KP+ +    GGCC
Sbjct: 198 KPEHQPPPNGGCC 210

Length = 211

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  141 bits (357), Expect = 2e-42
 Identities = 72/212 (33%), Positives = 107/212 (50%), Gaps = 51/212 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FK L+IG +G GK+C+L +F ++ F      TIG++F  + V++ GK +KLQIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           RF ++T SYYRGA G +LVYDIT+ +SF+ +  WL +    A+ D+  +++G  KD    
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDL--- 117

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                                       ED + V          
Sbjct: 118 --------------------------------------------EDDREVTFL----EAS 129

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
             A+E G+ F+ETSA    N+E+AF++ A +I
Sbjct: 130 RFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  141 bits (356), Expect = 4e-42
 Identities = 71/217 (32%), Positives = 107/217 (49%), Gaps = 51/217 (23%)

Query: 8   FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
           ++FK ++IGD GVGK+C+L +F++  F      TIG++F  + +++ G+KIKLQIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 68  QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127
           QERF  +T SYYRGA G ++VYDIT   +++++  WL +     N +    ++G   D  
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120

Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
            Q                     D+T E++                              
Sbjct: 121 AQR--------------------DVTYEEA------------------------------ 130

Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
            +  A E G+ F+E SAK   N+E AF+E A  IY  
Sbjct: 131 -KQFADENGLLFLECSAKTGENVEDAFLETAKKIYQN 166

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  138 bits (350), Expect = 5e-41
 Identities = 83/231 (35%), Positives = 112/231 (48%), Gaps = 53/231 (22%)

Query: 4   KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
           K YD+L K LL+GDS VGK  +L    D +  + +   +GID+K  T+ L G+++KLQ+W
Sbjct: 1   KAYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLW 60

Query: 64  DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
           DT+GQ RF TI  SY RGA GI+LVYDITN  SFD I +W++ IDEHA   V K+++G  
Sbjct: 61  DTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGN- 118

Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
                  R H                            L + R                V
Sbjct: 119 -------RLH----------------------------LAFKRQ---------------V 128

Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAP 234
              + +A A   G+ F E S   N NI ++F ELA  +  +  GR P   P
Sbjct: 129 ATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMR-HGRPPQSPP 178

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  137 bits (347), Expect = 1e-40
 Identities = 54/109 (49%), Positives = 67/109 (61%), Gaps = 10/109 (9%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQERF  +   YYRGA G +LVYDIT+  SF+N+ KWL  I  HA+E+  +V     
Sbjct: 54  DTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNK 113

Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223
                   V    GEA+A+E G+ FMETSAK N N+E+AF ELA  I  
Sbjct: 114 CDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  134 bits (339), Expect = 2e-39
 Identities = 65/212 (30%), Positives = 96/212 (45%), Gaps = 51/212 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FK++L+G+  VGKT ++ R+ ++ FN    ST    F  KTV++ GK+I L IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           R+H +   YYR A G +LVYDIT+  SF  + KW++ + +    ++  +I+G   D   Q
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                               R +                K   E
Sbjct: 121 ------------------------------------RVVS---------------KSEAE 129

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
             A+  G +  ETSAK    IE+ F+ LA  +
Sbjct: 130 EYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  133 bits (337), Expect = 3e-39
 Identities = 50/112 (44%), Positives = 75/112 (66%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            KL+ +GD  VGKT ++ RF  D F+  + +TIGIDF  KT+ +  K ++LQ+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           RF ++  SY R +   ++VYDITN +SFDN  KW+ ++ +    DV  +++G
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVG 112

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  134 bits (339), Expect = 5e-39
 Identities = 49/102 (48%), Positives = 75/102 (73%), Gaps = 1/102 (0%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQ 68
           F+L++IGDS VGK+ +L RF++  F      T+G+DF  + ++++ G +IKLQ+WDTAGQ
Sbjct: 3   FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ 62

Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 110
           ERF +IT SYYR ++G++LV+DITN +SF+++  WL     H
Sbjct: 63  ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSH 104

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  131 bits (331), Expect = 3e-38
 Identities = 64/215 (29%), Positives = 100/215 (46%), Gaps = 54/215 (25%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K++++GDSGVGKT ++ ++ +  F+  + +TIG DF  K V +  + + LQIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEK---MILGKTKD 125
           RF ++  ++YRGA   +LVYD+TN KSF+++  W       A+  D E    ++LG   D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
              +                                    R +     +       W CK
Sbjct: 121 LEEK------------------------------------RQVSTKKAQQ------W-CK 137

Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220
            +G          + ETSAK  IN+++AF  +A  
Sbjct: 138 SKGNIP-------YFETSAKEAINVDQAFETIARL 165

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  125 bits (316), Expect = 4e-36
 Identities = 49/118 (41%), Positives = 80/118 (67%), Gaps = 2/118 (1%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FK+++IGDS VGKTC+ +RF    F     +TIG+DF+ +TV++ G++IK+Q+WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 70  RF-HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKD 125
           RF  ++   YYR    ++ VYD+TN  SF ++  W+   ++H+   +V ++++G   D
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCD 120

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  122 bits (307), Expect = 3e-34
 Identities = 43/100 (43%), Positives = 70/100 (70%), Gaps = 1/100 (1%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDL-KGKKIKLQIWDTAGQ 68
           FK+L+IGD GVGKT ++ R+    F+  + +TIG+DF +K ++      ++LQ+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 108
           ERF  +T  YY+GA+G ++V+D+T   +F+ +LKW  ++D
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLD 100

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  114 bits (286), Expect = 4e-31
 Identities = 66/248 (26%), Positives = 107/248 (43%), Gaps = 40/248 (16%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FK++++GD GVGKT +L R   D F   +  TIG     KT++   + IKLQ+WDTAGQE
Sbjct: 6   FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65

Query: 70  RFHTITTSYYRGAMGIMLVYDITN-EKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
            + ++   YYRGA GI++VYD T  E S +   +WL  + E A +DV  +++G   D   
Sbjct: 66  EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKID--- 122

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                     +   +    ++  +  E            +       P+V N        
Sbjct: 123 ---------LFDEQSSSEEILNQLNREVVLL--------VLAPKAVLPEVANP------- 158

Query: 189 EAIAREYGVRFMETSAKA--NINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKP-DR 245
                      +ETSAK+    N+ + F EL   + ++           ++     P ++
Sbjct: 159 ---------ALLETSAKSLTGPNVNELFKELLRKLLEEIEKLVLKNELRQLDRLNNPIEQ 209

Query: 246 GGMAGGCC 253
             +A   C
Sbjct: 210 AALASFNC 217

Length = 219

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  104 bits (260), Expect = 1e-27
 Identities = 50/104 (48%), Positives = 65/104 (62%), Gaps = 10/104 (9%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--------- 175
           DTAGQERF ++T +YYR A  ++L+YD+TN+ SFDNI  WL  I E+A  D         
Sbjct: 56  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNK 115

Query: 176 PQVVNSWVCKHR-GEAIAREYGVRFMETSAKANINIEKAFIELA 218
             +    V K   GE +A+EYGV FMETSAK  +N+E AF  +A
Sbjct: 116 ADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA 159

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  101 bits (252), Expect = 1e-26
 Identities = 47/116 (40%), Positives = 78/116 (67%), Gaps = 1/116 (0%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K++++GD  VGKTC++ RF  D F+  + +TIG+DF+++  ++ G    LQ+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN-IDEHANEDVEKMILGKTKD 125
           F  I ++YYRGA  I++V+D+T+  S ++  +WL + + E+    V   ++G  KD
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKD 117

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =   99 bits (250), Expect = 3e-26
 Identities = 60/212 (28%), Positives = 83/212 (39%), Gaps = 53/212 (25%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++G  GVGK+ +  RF    F   +  TI  D   K + + G+   L I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAGQ 129
           F  +   Y R   G +LVY IT+ +SF+ I      I      EDV  +++G   D    
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLEN- 118

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
           ER                    ++ E                  E   +   W C     
Sbjct: 119 ERQ-------------------VSTE------------------EGEALAEEWGCP---- 137

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
                    F+ETSAK NINI++ F  L   I
Sbjct: 138 ---------FLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =   99 bits (250), Expect = 4e-26
 Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 44/212 (20%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K++++GD  VGKTC+L  ++ + F T ++ T+  D     V + GK++ L +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y      +L + + +  SF+N+  KW   I  +   +V  +++G   D    
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHY-CPNVPIILVGTKID---- 115

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                              LR+ D +  +  +     +    GE
Sbjct: 116 -----------------------------------LRD-DGNTLKKLEKKQKPITPEEGE 139

Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELATA 220
            +A+E G V++ME SA     +++ F E   A
Sbjct: 140 KLAKEIGAVKYMECSALTQEGLKEVFDEAIRA 171

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 96.5 bits (241), Expect = 6e-25
 Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 57/211 (27%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +F    F   +  TI  D   K +++ G+   L I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
            F  +   Y R   G +LVY IT+ +SF+ I K  R             IL + KD    
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKK-FRE-----------QIL-RVKDR--- 103

Query: 130 ERFHTITTSYYRGAMGIMLV---YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
           +               I+LV    D+ +E+                          V   
Sbjct: 104 DDV------------PIVLVGNKCDLESERV-------------------------VSTE 126

Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIEL 217
            G+ +AR++G  F+ETSAK  +N+++AF +L
Sbjct: 127 EGKELARQWGCPFLETSAKERVNVDEAFYDL 157

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 96.7 bits (241), Expect = 7e-25
 Identities = 31/95 (32%), Positives = 65/95 (68%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K++ +G+SGVGK+C++ R+ +  F + ++ TIGID+ +K V ++ K++++  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 105
           +  +   +Y+   G++LVYD+T+ +SF+ +  WL+
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLK 96

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 97.1 bits (242), Expect = 1e-24
 Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 11/109 (10%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQERF +IT SYYR ++G++LV+DITN +SF+++  WL     H      V      
Sbjct: 58  DTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGH 117

Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
                    V +   E +A++ G++++ETSA+   N+E+AF  L   IY
Sbjct: 118 KCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIY 166

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 95.4 bits (238), Expect = 2e-24
 Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 10/107 (9%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQERF ++  SY R +   ++VYDITN +SFDN  KW+ ++ +    D  +V     
Sbjct: 55  DTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNK 114

Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                   V    GE  A+E    F+ETSAKA  N+++ F ++A A+
Sbjct: 115 TDLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 95.3 bits (238), Expect = 2e-24
 Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 57/211 (27%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +F    F   +  TI  D   K +++ G+   L I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
            F  +   Y R   G +LVY IT+ +SF+ I K              + IL + KD    
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAK------------FREQIL-RVKDR--- 105

Query: 130 ERFHTITTSYYRGAMGIMLV---YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
           +               I+LV    D+ NE+                          V   
Sbjct: 106 DDV------------PIVLVGNKCDLENERV-------------------------VSTE 128

Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIEL 217
            G+ +AR++G  F+ETSAK  IN+++AF +L
Sbjct: 129 EGKELARQWGCPFLETSAKERINVDEAFYDL 159

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 94.8 bits (236), Expect = 3e-24
 Identities = 42/116 (36%), Positives = 69/116 (59%), Gaps = 4/116 (3%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK--GKKIKLQIWDTAGQ 68
           K++++G+  VGK+ ++ RF    F   +  TIG+DF  K + L+   + ++L +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK 124
           E F  IT +YYRGA   +LV+  T+ +SF+ I  W   ++    +    M+L +TK
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDI--PMVLVQTK 115

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 94.6 bits (235), Expect = 4e-24
 Identities = 39/95 (41%), Positives = 64/95 (67%)

Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K++L+GD GVGK+ ++ R+  + F+T    TIG++F  K +++ G  + LQIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 103
           ERF ++ T +YRG+   +L + + + +SF N+  W
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNW 99

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 92.7 bits (231), Expect = 2e-23
 Identities = 49/211 (23%), Positives = 90/211 (42%), Gaps = 46/211 (21%)

Query: 12  LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71
           L+++GD  VGKTC+L  ++ +AF   ++ T+  +     V++ GK ++L +WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 72  HTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQE 130
             +    Y      ++ + + +  SF+N+  KW   +      +V  +++G   D     
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NVPIILVGTKLD----- 113

Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN-SWVCKHRGE 189
                                             LRN D+   E+        V   +G+
Sbjct: 114 ----------------------------------LRN-DKSTLEELSKKKQEPVTYEQGQ 138

Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELAT 219
           A+A+  G V+++E SA     + + F E A 
Sbjct: 139 ALAKRIGAVKYLECSALTQEGVREVF-EEAI 168

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 91.0 bits (226), Expect = 2e-22
 Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 5/115 (4%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK-KIKLQIWDTAGQ 68
            K++++GD   GKT ++ RF+ + F  ++  TIG+DF  + + L G   + LQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE---KMIL 120
           +    +   Y  GA  + LVYDITN +SF+N+  WL  + +  NE+ E   KM+L
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKK-VNEESETKPKMVL 114

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 87.9 bits (217), Expect = 2e-21
 Identities = 42/94 (44%), Positives = 61/94 (64%)

Query: 32  DAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDI 91
           D F+  + STIGIDF  KT+ L    ++LQ+WDTAGQERF ++  SY R +   ++VYDI
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 92  TNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           TN +SF+N  KW+++I     +DV   ++G   D
Sbjct: 63  TNRQSFENTTKWIQDILNERGKDVIIALVGNKTD 96

Length = 176

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 87.4 bits (217), Expect = 3e-21
 Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 44/208 (21%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K++++GD G GKTC+L  ++  +F   ++ T+  ++        GK I+L +WDTAGQE
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQE 63

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILG-KTKDTA 127
            +  +    Y     I++ Y + N  S DN+  KW   ++ H       +++G KT    
Sbjct: 64  DYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVN-HFCPGTPIVLVGLKT---- 118

Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
                                  D+  +K+  + L+           +P      V   +
Sbjct: 119 -----------------------DLRKDKNSVSKLR-------AQGLEP------VTPEQ 142

Query: 188 GEAIAREYG-VRFMETSAKANINIEKAF 214
           GE++A+  G V ++E SAK   N+++ F
Sbjct: 143 GESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 87.2 bits (216), Expect = 4e-21
 Identities = 60/247 (24%), Positives = 103/247 (41%), Gaps = 59/247 (23%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAF-NTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           K++++G   VGKT ++ R+    F    + +TIG  F  K + +  + + L IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW---LRNIDEHANEDVEKMILGKTKDT 126
           R+  ++  YYRGA   ++ YD+T+  SF+    W   L+N++EH     +  + G   D 
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEH----CKIYLCGTKSDL 117

Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
                                    I  ++S       LR +D H  +D           
Sbjct: 118 -------------------------IEQDRS-------LRQVDFHDVQD----------- 134

Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDRG 246
                A E   +  ETS+K   N+++ F ++A     + + +   E    V + +K +  
Sbjct: 135 ----FADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQMNTEK--GVDLGQKKNS- 187

Query: 247 GMAGGCC 253
                CC
Sbjct: 188 -YFYSCC 193

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 84.1 bits (208), Expect = 3e-20
 Identities = 39/103 (37%), Positives = 60/103 (58%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K++L+GDS VGK+ ++ RF  D +    +ST  +         +GK I +  WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE 113
           F T+  SYY  A   +LV+D+T + ++ N+ KW   + E+  E
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPE 104

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 83.7 bits (207), Expect = 7e-20
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 55/235 (23%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD GVGKT +  +   + F  T+  TI   ++ + V + G+   L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKW---LRNIDEHANEDVEKMILGKTKDTA 127
           +  +   + R   G +LVY IT+  +F+ + ++   ++ + + +  DV  MI+G   D  
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDK- 118

Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
                                      E+                          V    
Sbjct: 119 -------------------------VYERE-------------------------VSTEE 128

Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKK 242
           G A+AR  G  F+E SAK N+N+E+AF  L  A+  +  G    +       +KK
Sbjct: 129 GAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKK 183

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 83.9 bits (208), Expect = 8e-20
 Identities = 48/146 (32%), Positives = 66/146 (45%), Gaps = 17/146 (11%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH---ANEDP----Q 177
           D AGQERF  +T  YY+GA+G ++V+D+T   +F+ +LKW  ++D      N +P     
Sbjct: 56  DIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALL 115

Query: 178 VVNSWVCKHRGEAIAREYGVRF---------METSAKANINIEKAFIELATAIYDKTSGR 228
           + N    K    A   E   +F          ETSAK NINIE+A   L   I     G 
Sbjct: 116 LANKCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGL 175

Query: 229 -DPLEAPDRVTIDKKPDRGGMAGGCC 253
             P    D V   K+      +  CC
Sbjct: 176 QSPEPDEDNVIDLKQETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 81.7 bits (202), Expect = 2e-19
 Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 51/212 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +F    F T +  TI  D   K  ++ G+  +L I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAGQE 61

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
            F  +   Y R   G +LV+ +T+  SF+ + K+   I    + D   MIL   K     
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNK----- 116

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                D+ +++                          V +  G+
Sbjct: 117 --------------------ADLEHQRQ-------------------------VSREEGQ 131

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
            +AR+  + ++ETSAK  +N++KAF +L   I
Sbjct: 132 ELARQLKIPYIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 80.9 bits (200), Expect = 6e-19
 Identities = 51/213 (23%), Positives = 88/213 (41%), Gaps = 51/213 (23%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K++++G  GVGK+ +  +F  D F   +  T   D   K V L G++++L I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQE 59

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
            +  I  +Y+R   G +LV+ IT+ +SF  + ++   I     +D   ++L   K     
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNK----- 114

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                D+ +++                                 
Sbjct: 115 --------------------CDLEDKRQ-----------VSVEEA--------------A 129

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIY 222
            +A ++GV ++ETSAK   N++K F +L   I 
Sbjct: 130 NLAEQWGVNYVETSAKTRANVDKVFFDLVREIR 162

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 78.6 bits (194), Expect = 3e-18
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 10  FKLLLIGDSGVGKTCVLFRFS-DDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
            K++++GD  VGK+ +L R   +    T +      ++    ++  GK  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 69  ERFHTITTSYYRGAMGIMLVYDITN-EKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDT 126
           E +  I   YYR     + V+DI       + IL K  + I  HA   V  +++G   D 
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 77.9 bits (192), Expect = 7e-18
 Identities = 59/212 (27%), Positives = 102/212 (48%), Gaps = 51/212 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +F    F   +  TI   ++ K V++ G++  L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 60

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +F  +   Y +   G +LVY IT + +F+++            +D+ + IL + KDT   
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDL------------QDLREQIL-RVKDTE-- 105

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                         + ++LV +  +                   ED +VV     K +G+
Sbjct: 106 -------------DVPMILVGNKCDL------------------EDERVVG----KEQGQ 130

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
            +AR++G  F+ETSAKA IN+ + F +L   I
Sbjct: 131 NLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 77.7 bits (192), Expect = 1e-17
 Identities = 55/207 (26%), Positives = 89/207 (42%), Gaps = 57/207 (27%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K+ ++G   VGK+ +  +F +  F  ++  TI   F  K +  KG++  L+I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
           +  +   Y  G  G +LVY +T+ KSF+ +                K+I  K  D  G+E
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVV----------------KVIYDKILDMLGKE 105

Query: 131 RFHTITTSYYRGAMGIMLV---YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
                        + I+LV    D+  E+                          V    
Sbjct: 106 S------------VPIVLVGNKSDLHMERQ-------------------------VSAEE 128

Query: 188 GEAIAREYGVRFMETSAKANINIEKAF 214
           G+ +A  +G  F+E+SAK N N+E+AF
Sbjct: 129 GKKLAESWGAAFLESSAKENENVEEAF 155

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 77.1 bits (190), Expect = 1e-17
 Identities = 52/212 (24%), Positives = 83/212 (39%), Gaps = 52/212 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +   + F   +  TI  D   K V + G+   L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 60

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
            +  +   Y R   G + V+ I + KSF++I  +   I    + D   M+L   K     
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNK----- 115

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                D+                              V   +G+
Sbjct: 116 --------------------CDLAART--------------------------VSTRQGQ 129

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
            +A+ YG+ ++ETSAK    +E+AF  L   I
Sbjct: 130 DLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 33/98 (33%), Positives = 53/98 (54%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD GVGKT  + R     F   +I T+G++            I   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           +F  +   YY      ++++D+T+  ++ N+  W R+I
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDI 107

Length = 215

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 77.6 bits (191), Expect = 2e-17
 Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 5/118 (4%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K++L+GD  VGKT +L R+ +  F  T +ST+G  F +K    +     + IWDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKDT-VSTVGGAFYLK----QWGPYNISIWDTAGREQ 56

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
           FH + + Y RGA  ++L YD++N +S + +      + + ANED    ++G   D   
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 76.1 bits (187), Expect = 4e-17
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 52/213 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +F    F   +  TI  D   K +++  ++  L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +F  +   Y +   G  LVY IT ++SF+++      I    + +   MIL   K     
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNK----- 115

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                D+ +E+                          V K  G+
Sbjct: 116 --------------------CDLEDERV-------------------------VSKEEGQ 130

Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELATAI 221
            +AR++G   F+ETSAK+ IN+++ F +L   I
Sbjct: 131 NLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 29/95 (30%), Positives = 59/95 (62%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K+ L+GD+ +GKT ++ ++ +  F+  +I T+G++F  KT+ ++G +I   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 105
           F  +     + A+ I+ ++D+T + + ++I +W R
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYR 96

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 73.3 bits (180), Expect = 4e-16
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 11  KLLLIGDSGVGKT--CVLFRFSDDAFNTTFISTIGIDFKIKTV--DLKGKKIKLQIWDTA 66
           +  ++GD  VGK+    +F      F   +  T G D  +KTV        ++L I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 67  GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA 111
           GQE F  +  + +     + +VYD+TNE SF+N  +W+  +  H+
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHS 106

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 71.9 bits (177), Expect = 1e-15
 Identities = 31/98 (31%), Positives = 55/98 (56%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R     F   +++T+G++           KI+  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           +F  +   YY      ++++D+T+  ++ N+  W R++
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDL 98

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 72.1 bits (177), Expect = 1e-15
 Identities = 37/116 (31%), Positives = 67/116 (57%), Gaps = 3/116 (2%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L  FS D F   ++ T+  ++ +  +++ GK+++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 61

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKD 125
           +  +    Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 116

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 72.3 bits (177), Expect = 1e-15
 Identities = 50/221 (22%), Positives = 97/221 (43%), Gaps = 43/221 (19%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ +AF   +I T+  ++  +T  + G+ + L +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAGQEE 63

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  + T  Y      ++ + I +  S++N+  KW   +  H   +V  +++G  KD    
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRND 122

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                              L+ + E   + P      +   +G 
Sbjct: 123 --------------------------------ADTLKKLKEQ-GQAP------ITPQQGG 143

Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELATAIYDKTSGRD 229
           A+A++   V+++E SA     +++ F E   A+ + T  +D
Sbjct: 144 ALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPIKD 184

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 5/100 (5%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGI---DFKIKTVDLKGKKIKLQIWDTAG 67
           KL+L+G  GVGKT +  +   + F+    ST GI   D+KI   +   KKI+L +WD  G
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPE--RKKIRLNVWDFGG 60

Query: 68  QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           QE +H     +       +LV+D+        +  WLR I
Sbjct: 61  QEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQI 100

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 71.4 bits (175), Expect = 3e-15
 Identities = 58/233 (24%), Positives = 93/233 (39%), Gaps = 57/233 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +F  + F   +  TI   ++ K   +  +   L I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQE 64

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
            +  +   Y R   G + VY IT+  SF+ I  +   I    ++D   MIL   K     
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKC---- 120

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                D+ +E+                          V    G+
Sbjct: 121 ---------------------DLDSERQ-------------------------VSTGEGQ 134

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKK 242
            +A+ +G+ F+ETSAK  +N+++AF EL   I      R  L+        KK
Sbjct: 135 ELAKSFGIPFLETSAKQRVNVDEAFYELVREI------RKYLKEDMPSQKQKK 181

Length = 189

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 68.6 bits (168), Expect = 7e-15
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K+++IGD G GK+ +L +     F    +   G    + T+++ G    L IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSF---DNILKWLRNI 107
                  + + A  I+LVYD+T+ +S      ++ WL N+
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNL 100

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 67.3 bits (165), Expect = 6e-14
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K+ ++G SGVGK+ +  RF    F   +   +   +  + V + G+++ L+I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYS-RQVTIDGEQVSLEIQDTPGQQQ 59

Query: 71  FHT--ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE 116
                      R A G +LVY IT+  SFD + + L+ I E    D E
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGE 107

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 68.2 bits (167), Expect = 7e-14
 Identities = 31/100 (31%), Positives = 51/100 (51%)

Query: 8   FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
             FKL+++GD G GKT  + R     F   +  TIG++           KI+   WDTAG
Sbjct: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71

Query: 68  QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           QE+F  +   YY      ++++D+T   ++ N+  W R++
Sbjct: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL 111

Length = 219

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 66.7 bits (163), Expect = 1e-13
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 2/101 (1%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +L+GD  VGKT ++  ++ + + T ++ T   +F +  V + GK ++LQ+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDE 60

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEH 110
           F  +    Y      +L + + N  SF NI  KW+  I +H
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH 101

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 66.0 bits (161), Expect = 2e-13
 Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 2/102 (1%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K + +GD  VGKTC+L  ++ + F T ++ T+  +F    V + G  + L +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGNTVNLGLWDTAGQED 61

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           ++ +    YRGA   +L + + ++ S++N+L KW+  +  +A
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYA 103

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 66.0 bits (161), Expect = 2e-13
 Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 47/210 (22%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K++++GD   GKT +L  F+   F   +  T+  ++ I  + + G  ++L +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-IHDIFVDGLAVELSLWDTAGQEE 60

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           F  + +  Y     IML + + N  S +N+  KWL  I  H                   
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCP----------------- 103

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                         + ++LV    + +   N      +   +                G 
Sbjct: 104 -------------GVKLVLVALKCDLREPRNERDRGTHTISY--------------EEGL 136

Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELA 218
           A+A+     R++E SAK N  + +AF E A
Sbjct: 137 AVAKRINACRYLECSAKLNRGVNEAFTEAA 166

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 11/107 (10%)

Query: 13  LLIGDSGVGKTCVLFRFSDDAFNTT---FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +++G  GVGK+ +L                +T   D  +K +D    K+KL + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELD--KGKVKLVLVDTPGLD 58

Query: 70  RFH-----TITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEH 110
            F       +     RGA  I+LV D T+ +S ++  L  LR + + 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKE 105

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 65.6 bits (160), Expect = 3e-13
 Identities = 50/216 (23%), Positives = 101/216 (46%), Gaps = 58/216 (26%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +K++++G  GVGK+ +  +F  + F  ++  TI   ++ K V++ G++  L+I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYR-KQVEIDGRQCDLEILDTAGTE 60

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +F  +   Y +   G +LVY +T+E S + + + LR          E+++  + KD+   
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGE-LR----------EQVL--RIKDSD-- 105

Query: 130 ERFHTITTSYYRGAMGIMLV---YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
                         + ++LV    D+ +++                            + 
Sbjct: 106 -------------NVPMVLVGNKADLEDDRQVS-------------------------RE 127

Query: 187 RGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
            G ++++++G V F ETSA+   N+++ FI+L   I
Sbjct: 128 DGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 66.0 bits (161), Expect = 3e-13
 Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 46/211 (21%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKT +L+ F+   F   +  T+  +  +    + GK ++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTV-FENYVTDCRVDGKPVQLALWDTAGQEE 61

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y  A  I++ + I    S +N+  KW+  +  +   +V  +++G  KD    
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKD---- 116

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                              LR  +  A  +    + +V   + +
Sbjct: 117 -----------------------------------LRQ-EAVAKGNY-ATDEFVPIQQAK 139

Query: 190 AIAREYGVR-FMETSAKANINIEKAFIELAT 219
            +AR  G + +ME SA     ++  F E AT
Sbjct: 140 LVARAIGAKKYMECSALTGEGVDDVF-EAAT 169

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 65.3 bits (160), Expect = 3e-13
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           ++L++G  G GKT +L++       TT I TIG  F ++TV+ K   +K  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTT-IPTIG--FNVETVEYKN--VKFTVWDVGGQDK 55

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
              +   YY    G++ V D ++ +  +     L  +
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKL 92

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 64.4 bits (157), Expect = 9e-13
 Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 2/102 (1%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 103

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 63.9 bits (155), Expect = 1e-12
 Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 2/103 (1%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  +++DAF   ++ T+  D    +V + GK+  L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 59

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
            +  +    Y      ++ + + N  SF N+  +W+  + E+A
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA 102

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 7/120 (5%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           ++LL+G    GK+ +L++       TT I T+G  F ++ + L+ K + L +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVG--FNVEMLQLE-KHLSLTVWDVGGQEK 56

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI--DEHANEDVEKMILGKTKDTAG 128
             T+   Y     G++ V D ++E   D   K L++I  +EH  + V  ++L   +D  G
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHI-KGVPVVLLANKQDLPG 115

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 61.8 bits (150), Expect = 6e-12
 Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 53/209 (25%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +K++++G  GVGK+ +  +F    F   +  TI  DF  K +++      L+I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAG 128
           +F ++   Y +   G ++VY + N+++F +I      I      E V  +++G   D   
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
           +                                    R +   + E   +   W C    
Sbjct: 121 E------------------------------------REVS--SAEGRALAEEWGCP--- 139

Query: 189 EAIAREYGVRFMETSAKANINIEKAFIEL 217
                     FMETSAK+   + + F E+
Sbjct: 140 ----------FMETSAKSKTMVNELFAEI 158

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 61.7 bits (150), Expect = 7e-12
 Identities = 27/100 (27%), Positives = 59/100 (59%), Gaps = 2/100 (2%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K++L+GDS  GKT +L  F+ D+F   ++ T+  ++   + ++  ++I+L +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYT-ASFEVDKQRIELSLWDTSGSPY 61

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDE 109
           +  +    Y  +  +++ +DI+  ++ D++L KW   + E
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVRE 101

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 61.6 bits (149), Expect = 1e-11
 Identities = 26/93 (27%), Positives = 48/93 (51%)

Query: 15  IGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI 74
           +GD G GKT  + R     F   +++T+G++            I+  +WDTAGQE+F  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 75  TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
              YY      ++++D+T   ++ N+  W R++
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDL 93

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 59.8 bits (145), Expect = 4e-11
 Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 15/109 (13%)

Query: 125 DTAGQERF-HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA--NEDPQVVNS 181
           DTAGQERF  ++   YYR    ++ VYD+TN  SF ++  W+   ++H+  NE P+++  
Sbjct: 57  DTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVG 116

Query: 182 WVCKHR---------GEAIAREYGVRFMETSAKA---NINIEKAFIELA 218
             C  R          +  A  + +   ETSAK    N ++E  F+ LA
Sbjct: 117 NKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLA 165

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 59.1 bits (143), Expect = 7e-11
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 11/107 (10%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH-----------AN 173
           D+AGQE F  +  + +     + +VYD+TNE SF+N  +W+  +  H            N
Sbjct: 59  DSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGN 118

Query: 174 EDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA 220
           +        V   + +A+A+   ++F ETSAK  +  E  F+ LA A
Sbjct: 119 KCDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLARA 165

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 18/102 (17%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW---LRNIDEH------ANE- 174
           DTAGQERF T+  SYY  A   +LV+D+T + ++ N+ KW   LR           AN+ 
Sbjct: 55  DTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKI 114

Query: 175 --DPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAF 214
             DP V        +    A ++ +     SA    N+ K F
Sbjct: 115 DLDPSVTQ------KKFNFAEKHNLPLYYVSAADGTNVVKLF 150

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 58.5 bits (141), Expect = 1e-10
 Identities = 27/100 (27%), Positives = 58/100 (58%), Gaps = 2/100 (2%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K++++GDS  GKT +L  F+ D F   ++ T+  ++   + ++  ++I+L +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 65

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDE 109
           +  +    Y  +  +++ +DI+  ++ D++L KW   I E
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE 105

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 56.8 bits (137), Expect = 5e-10
 Identities = 50/218 (22%), Positives = 77/218 (35%), Gaps = 53/218 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +K++++G  GVGK+ V  +F   +F      TI   +K +   +  +   L I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQAR-IDNEPALLDILDTAGQA 61

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAG 128
            F  +   Y R   G ++ Y +T+  SF    ++   I      ED+  +++G   D   
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQ 121

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
           Q +                                                   V    G
Sbjct: 122 QRQ---------------------------------------------------VTTEEG 130

Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
             +ARE+   F ETSA     I+ AF  L   I  K S
Sbjct: 131 RNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRKES 168

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 56.0 bits (135), Expect = 8e-10
 Identities = 52/208 (25%), Positives = 84/208 (40%), Gaps = 49/208 (23%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +++++ G  GVGK+ ++ RF    F  ++I TI   ++ + +        LQI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKSICTLQITDTTGSH 60

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +F  +           +LVY IT+++S + +      I E    ++EK+           
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKI----------- 109

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                           IMLV      K            DE  + +       V    G 
Sbjct: 110 ---------------PIMLV----GNKC-----------DESPSRE-------VSSSEGA 132

Query: 190 AIAREYGVRFMETSAKANINIEKAFIEL 217
           A+AR +   FMETSAK N N+++ F EL
Sbjct: 133 ALARTWNCAFMETSAKTNHNVQELFQEL 160

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 29/101 (28%), Positives = 57/101 (56%), Gaps = 2/101 (1%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 61

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEH 110
           +  +    Y      ++ + + +  SF+N+  KW+  I  H
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH 102

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 15/108 (13%)

Query: 125 DTAGQERFHT--ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW 182
           DT GQ++           R A G +LVY IT+  SFD + + L+ I E    D ++    
Sbjct: 53  DTPGQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVIL 112

Query: 183 V------CKHR------GEAIAREYGVRFMETSAKANIN-IEKAFIEL 217
           V         R      G+ +A E G  F E SA  N   ++  F EL
Sbjct: 113 VGNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHEL 160

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 55.3 bits (133), Expect = 3e-09
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 12/131 (9%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKG-----KKIKLQIWDT 65
           K+L++GDSGVGK+ ++     +        T+G    ++           K   +++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 66  AGQ----ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
            G     E   +    +Y    GI+ V+D+TN+KS  N+ +W     E  N D     L 
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSL---EALNRDTFPAGLL 118

Query: 122 KTKDTAGQERF 132
            T      E+F
Sbjct: 119 VTNGDYDSEQF 129

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 55.1 bits (132), Expect = 4e-09
 Identities = 27/98 (27%), Positives = 55/98 (56%), Gaps = 2/98 (2%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+L+GD   GKT +L   + D +  T++ T+  ++    ++ + ++++L +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 73

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNI 107
           +  +    Y  +  ++L +DI+  + FD+ L KW   I
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEI 111

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 54.4 bits (131), Expect = 6e-09
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 18/130 (13%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV--NSW 182
           DTAGQE+F  +   YY      ++++D+T   ++ N+  W R++       P V+  N  
Sbjct: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127

Query: 183 VCKHR---GEAIA--REYGVRFMETSAKANINIEKAFIELATAIYDKTSG-------RDP 230
             K+R    + +   R+  +++ E SAK+N N EK F+ LA     K +G         P
Sbjct: 128 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR----KLAGDPNLHFVESP 183

Query: 231 LEAPDRVTID 240
             AP  V ID
Sbjct: 184 ALAPPEVQID 193

Length = 219

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 53.4 bits (128), Expect = 8e-09
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           ++L++G    GKT +L++       TT I TIG  F ++TV  K   I   +WD  GQ++
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGESVTT-IPTIG--FNVETVTYK--NISFTVWDVGGQDK 69

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAGQ 129
              +   YY    G++ V D  +    D   + L R ++E    D   ++    +D    
Sbjct: 70  IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA 129

Query: 130 ERFHTIT 136
            +   IT
Sbjct: 130 MKAAEIT 136

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 21/43 (48%), Positives = 32/43 (74%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN 167
           DTAGQERF  I ++YYRGA  I++V+D+T+  S ++  +WL +
Sbjct: 55  DTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLED 97

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 11/115 (9%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV--NSW 182
           DTAGQE+F  +   YY      ++++D+T+  ++ N+  W R++       P V+  N  
Sbjct: 55  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 114

Query: 183 VCKHRGE---AIA--REYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLE 232
             K R      I   R+  +++ E SAK+N N EK F+ LA     K  G   LE
Sbjct: 115 DIKDRKVKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR----KLLGNPNLE 165

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 10/122 (8%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G    GKT +L++       TT I TIG  F ++TV  K   +K  +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIVTT-IPTIG--FNVETVTYKN--VKFTVWDVGGQE 69

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFD---NILKWLRNIDEHANEDVEKMILGKTKDT 126
               +  +Y+     ++ V D  +    +     L  L N +E    D   +IL   +D 
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEE--LADAPLLILANKQDL 127

Query: 127 AG 128
            G
Sbjct: 128 PG 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 10/126 (7%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV--NSW 182
           DTAGQE+F  +   YY      ++++D+T+  ++ N+  W R+I       P V+  N  
Sbjct: 64  DTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKV 123

Query: 183 VCKHR---GEAIA--REYGVRFMETSAKANINIEKAFIELATAIYDKTS---GRDPLEAP 234
             K R      I   R+  +++ + SAK+N N EK F+ LA  + +  +      P  AP
Sbjct: 124 DVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAP 183

Query: 235 DRVTID 240
           + + ID
Sbjct: 184 EEIQID 189

Length = 215

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 52.3 bits (125), Expect = 3e-08
 Identities = 22/92 (23%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K++++GD+  GKT +L  F+ D +  +++ T+  ++   + ++   +I+L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYT-ASFEIDKHRIELNMWDTSGSSY 61

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILK 102
           +  +    Y  +  +++ +DI+  ++ D++LK
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLK 93

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 50.2 bits (120), Expect = 8e-08
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 6/127 (4%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           ++L++G    GKT +L++       TT I T+G  F ++TV  K   +K  +WD  GQ++
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGQDK 65

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAGQ 129
              +   YY G  G++ V D  +    D   + L R I++    D   ++    +D    
Sbjct: 66  IRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA 125

Query: 130 ERFHTIT 136
            + H I 
Sbjct: 126 MKPHEIQ 132

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 50.6 bits (121), Expect = 9e-08
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDF-KIKTVDLKGKKIKLQIWDTAGQ 68
            ++++G    GKT VL+R   + F  T + T G +  KIK      K +    WD  GQ
Sbjct: 4  LHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQ 62

Query: 69 ERFHTITTSYYRGAMGIMLVYD 90
          E+   +  SY R   GI+ V D
Sbjct: 63 EKLRPLWKSYTRCTDGIVFVVD 84

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 50.4 bits (120), Expect = 1e-07
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 7/101 (6%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAGQE+F  +   YY      ++++D+T   ++ N+  W R++       P V      
Sbjct: 50  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKV 109

Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
            V     K +     R+  +++ + SAK+N N EK F+ LA
Sbjct: 110 DVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLA 150

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 43/209 (20%), Positives = 77/209 (36%), Gaps = 54/209 (25%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           +L+ +G +GVGKT ++ RF  D F      T+  +   K  ++ G K+ + I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN--IDEHANEDVEKMILGKTKDTAG 128
           F  +     +      LVY + + +SF+ + K LR   ++   ++ V  +++G   D+  
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEV-KRLREEILEVKEDKFVPIVVVGNKIDSLA 118

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
           + +                +                             V   W      
Sbjct: 119 ERQ----------------VEAADALST---------------------VELDWNN---- 137

Query: 189 EAIAREYGVRFMETSAKANINIEKAFIEL 217
                     F+E SAK N N+ + F EL
Sbjct: 138 ---------GFVEASAKDNENVTEVFKEL 157

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 48.1 bits (114), Expect = 5e-07
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 5/80 (6%)

Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
          +++ +G  G GKT +LF+   D F    I TIG  F ++TV+ K   +K  IWD  G+ +
Sbjct: 1  RVVTLGLDGAGKTTILFKLKQDEFMQP-IPTIG--FNVETVEYK--NLKFTIWDVGGKHK 55

Query: 71 FHTITTSYYRGAMGIMLVYD 90
             +   YY     ++ V D
Sbjct: 56 LRPLWKHYYLNTQAVVFVID 75

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 49.1 bits (117), Expect = 6e-07
 Identities = 25/112 (22%), Positives = 54/112 (48%), Gaps = 13/112 (11%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV----------DLKGKKIK- 59
           ++L++GDSGVGK+ ++      +       TIG    +K +           +KG   + 
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 60  --LQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE 109
             +++WD +G ER+    + +Y    G++ V+D++  ++  ++ KW   +  
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAA 134

Length = 334

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 5/80 (6%)

Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
          ++L++G    GKT +L++       TT I TIG  F ++TV+ K   +K  +WD  GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEVVTT-IPTIG--FNVETVEYK--NLKFTMWDVGGQDK 73

Query: 71 FHTITTSYYRGAMGIMLVYD 90
             +   YY+   G++ V D
Sbjct: 74 LRPLWRHYYQNTNGLIFVVD 93

Length = 182

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 20/51 (39%), Positives = 33/51 (64%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED 175
           DTAG+E+FH + + Y RGA  ++L YD++N +S + +      + + ANED
Sbjct: 50  DTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANED 100

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
          ++L++G    GKT +L++       TT I TIG  F ++TV+ K   I   +WD  GQ++
Sbjct: 2  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NISFTVWDVGGQDK 56

Query: 71 FHTITTSYYRGAMGIMLVYD 90
             +   Y++   G++ V D
Sbjct: 57 IRPLWRHYFQNTQGLIFVVD 76

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 10  FKLLLIGDSGVGKTCVLFRFS-DDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           +K++++G    GKT +L++F   +  +T+   TIG + +     +  K I+  +WD  GQ
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGEVVHTS--PTIGSNVEE----IVYKNIRFLMWDIGGQ 69

Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           E   +   +YY     ++LV D T+ +      + L  +   A+ED+ K +L
Sbjct: 70  ESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKM--LAHEDLRKAVL 119

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 13/126 (10%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL---RNIDEHANEDPQVV-- 179
           D  GQ+    +   Y  GA  + LVYDITN +SF+N+  WL   + ++E +   P++V  
Sbjct: 56  DIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLV 115

Query: 180 --------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPL 231
                   N  V   +    A+E  +  +  SAK    +   F  +A  +      +  L
Sbjct: 116 GNKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKLSQAEL 175

Query: 232 EAPDRV 237
           E   RV
Sbjct: 176 EQSQRV 181

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 8/104 (7%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           ++L++G    GKT +L++       TT I TIG  F ++TV+ K   I   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NISFTVWDVGGQDK 73

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED 114
              +   Y++   G++ V D +N++  D +++    +    NED
Sbjct: 74  IRPLWRHYFQNTQGLIFVVD-SNDR--DRVVEARDELHRMLNED 114

Length = 181

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 16/110 (14%)

Query: 125 DTAGQERFH-----TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV 179
           DT G + F       +     RGA  I+LV D T+ +S ++  K L          P ++
Sbjct: 53  DTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDA-KLLILRRLRKEGIPIIL 111

Query: 180 --------NSWVCKH--RGEAIAREYGVRFMETSAKANINIEKAFIELAT 219
                        +   R E +A+  GV   E SAK    +++ F +L  
Sbjct: 112 VGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 24/88 (27%), Positives = 46/88 (52%)

Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
          ++++L+GDSGVGK+ +   F+   +  +     G D   +TV + G++  L ++D   QE
Sbjct: 1  YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSF 97
              +  S  +     ++VY +T+  SF
Sbjct: 61 DGMWLEDSCMQVGDAYVIVYSVTDRSSF 88

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
          ++L++G  G GKT +L+R       TT I TIG  F ++TV  K   +K Q+WD  GQ  
Sbjct: 1  RILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTYK--NLKFQVWDLGGQTS 55

Query: 71 FHTITTSYYRGAMGIMLVYDITNE 94
                 YY     I+ V D T+ 
Sbjct: 56 IRPYWRCYYSNTDAIIYVVDSTDR 79

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 8/119 (6%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           ++++++G S VGKT ++ RF    F   +  TI  DF  K   ++G+  +L I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 70  RFHTITT-SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127
            F  +   S   G + I LV+ + N +SF+ + +    I E      +  +  KTK+  
Sbjct: 60  PFPAMRRLSILTGDVFI-LVFSLDNRESFEEVCRLREQILE-----TKSCLKNKTKENV 112

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 14 LIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT 73
          L+G    GKT ++   +   F+   I T+G  F ++ V      IK  +WD  GQ RF +
Sbjct: 4  LVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRFRS 59

Query: 74 ITTSYYRGAMGIMLVYDITNEKSFD 98
          +   Y RG   I+ V D  + +  +
Sbjct: 60 MWERYCRGVNAIVYVVDAADREKLE 84

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
          ++LL+G    GKT +L + + +  +     T G  F IK V   G   KL +WD  GQ +
Sbjct: 17 RILLLGLDNAGKTTILKQLASEDISHIT-PTQG--FNIKNVQADG--FKLNVWDIGGQRK 71

Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFD 98
                +Y+     ++ V D  + K F+
Sbjct: 72 IRPYWRNYFENTDVLIYVIDSADRKRFE 99

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 23/113 (20%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA----------- 172
           DTAGQ+ F  +    Y      +L + + N  SF NI  KW+  I +H            
Sbjct: 54  DTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQ 113

Query: 173 ---NEDPQVVNSW-------VCKHRGEAIAREYG-VRFMETSAKANINIEKAF 214
                D  V+          V + R +A+A + G   ++E SA    N+++ F
Sbjct: 114 ADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 29/120 (24%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFIS------------TIGIDF-KIKTVDLKGKK 57
           K+++IG  G GKT  +   SD     T               T+ +DF  I+  +  G  
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTG-- 69

Query: 58  IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEK 117
             + ++ T GQERF  +     RGA+G +++ D +            R I  HA E ++ 
Sbjct: 70  --VHLFGTPGQERFKFMWEILSRGAVGAIVLVDSS------------RPITFHAEEIIDF 115

Length = 187

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)

Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFIS-TIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           ++L++G    GKT +L +F+ +  +T  IS T+G  F IKT++  G   KL IWD  GQ
Sbjct: 15 MRILMLGLDNAGKTTILKKFNGEDIST--ISPTLG--FNIKTLEYNG--YKLNIWDVGGQ 68

Query: 69 ERFHTITTSYYRGAMGIMLVYD 90
          +   +   +Y+     ++ V D
Sbjct: 69 KSLRSYWRNYFESTDALIWVVD 90

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWD----- 64
            ++ ++G  GVGKT ++ +F    F   +I T         V L G+   L I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 65  ----TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 105
               TAGQE          R +   +LVYDI +  SF  + K LR
Sbjct: 61  RYPGTAGQEWMDPRFRG-LRNSRAFILVYDICSPDSFHYV-KLLR 103

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 20/93 (21%)

Query: 24 CVLFRFSDDAFNTTFISTIGIDF------------------KIKTVDLKGKKIKLQIWDT 65
          CVL    D+A  TTF+      F                   I T+++   K +L  WD 
Sbjct: 1  CVLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVG--KARLMFWDL 58

Query: 66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFD 98
           GQE   ++   YY  + G++ V D T+ + F+
Sbjct: 59 GGQEELRSLWDKYYAESHGVIYVIDSTDRERFN 91

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF---DNILKWLRNIDEHANEDPQVV 179
           D  G+E        + + A  I+LVYD+T+ +S      ++ WL N+ +   + P ++
Sbjct: 54  DFGGREELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVIL 111

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 13 LLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIK-LQIWDTAGQERF 71
          LL+G S  GKT +  + +     +T  S   I+  + +      K K L + D  G E+ 
Sbjct: 4  LLLGPSDSGKTALFTKLTTGKVRSTVTS---IEPNVASFYSNSSKGKKLTLVDVPGHEKL 60

Query: 72 HTITTSYYRG-AMGIMLVYDIT 92
                Y +     I+ V D  
Sbjct: 61 RDKLLEYLKASLKAIVFVVDSA 82

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
KOG0084|consensus	205		100.0
KOG0078|consensus	207		100.0
KOG0092|consensus	200		100.0
KOG0098|consensus	216		100.0
KOG0094|consensus	221		100.0
KOG0394|consensus	210		100.0
KOG0080|consensus	209		100.0
KOG0079|consensus	198		100.0
KOG0087|consensus	222		100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
KOG0086|consensus	214		100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
KOG0093|consensus	193		100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0088|consensus	218		100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
KOG0091|consensus	213		100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
KOG0095|consensus	213		100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
KOG0083|consensus	192		100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
KOG0081|consensus	219		100.0
KOG0097|consensus	215		100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.98
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.98
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.98
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.97
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.97
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.97
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.97
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.97
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.97
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
KOG0395|consensus	196		99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
KOG0393|consensus	198		99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.96
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.96
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.96
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.96
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
PTZ00099	176	rab6; Provisional	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
PLN00023	334	GTP-binding protein; Provisional	99.95
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.95
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
KOG4252|consensus	246		99.94
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.94
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.94
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.94
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.94
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.94
KOG0073|consensus	185		99.93
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.93
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.93
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.93
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.92
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.92
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.92
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.92
KOG0070|consensus	181		99.91
COG1100	219	GTPase SAR1 and related small G proteins [General	99.91
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.91
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.91
KOG1673|consensus	205		99.91
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.91
PRK12299	335	obgE GTPase CgtA; Reviewed	99.9
PRK04213	201	GTP-binding protein; Provisional	99.9
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.9
KOG0075|consensus	186		99.89
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.89
KOG0071|consensus	180		99.89
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.89
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.89
KOG0096|consensus	216		99.89
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.88
KOG3883|consensus	198		99.88
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.88
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.88
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.88
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.88
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.87
cd00881	189	GTP_translation_factor GTP translation factor fami	99.87
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.87
PRK12297	424	obgE GTPase CgtA; Reviewed	99.87
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.86
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.86
PRK15494	339	era GTPase Era; Provisional	99.86
KOG4423|consensus	229		99.86
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.86
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.86
PRK11058	426	GTPase HflX; Provisional	99.86
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.86
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.86
PRK03003	472	GTP-binding protein Der; Reviewed	99.86
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.86
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.85
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.85
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.84
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.84
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.84
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.84
CHL00189	742	infB translation initiation factor 2; Provisional	99.84
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.84
PRK05433	600	GTP-binding protein LepA; Provisional	99.84
KOG0076|consensus	197		99.83
PRK05306	787	infB translation initiation factor IF-2; Validated	99.83
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.83
PRK00093	435	GTP-binding protein Der; Reviewed	99.83
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.83
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.83
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.83
PRK12296	500	obgE GTPase CgtA; Reviewed	99.83
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.82
PRK00089	292	era GTPase Era; Reviewed	99.82
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.82
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.81
PRK12298	390	obgE GTPase CgtA; Reviewed	99.81
KOG0072|consensus	182		99.81
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.81
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.81
COG2229	187	Predicted GTPase [General function prediction only	99.8
PRK12317	425	elongation factor 1-alpha; Reviewed	99.8
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.8
KOG0074|consensus	185		99.8
PRK00093	435	GTP-binding protein Der; Reviewed	99.79
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.79
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.79
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.79
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.79
PRK10218	607	GTP-binding protein; Provisional	99.79
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.78
COG1160	444	Predicted GTPases [General function prediction onl	99.78
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.78
PRK13351	687	elongation factor G; Reviewed	99.77
COG1159	298	Era GTPase [General function prediction only]	99.77
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.76
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.76
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.76
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.75
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.75
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.75
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.75
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.74
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.74
PRK04004	586	translation initiation factor IF-2; Validated	99.73
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.73
COG0486	454	ThdF Predicted GTPase [General function prediction	99.72
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.71
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.71
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.7
PRK12736	394	elongation factor Tu; Reviewed	99.7
KOG1707|consensus	625		99.7
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.69
PRK12735	396	elongation factor Tu; Reviewed	99.69
PRK00007	693	elongation factor G; Reviewed	99.69
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.69
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.69
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.69
KOG1423|consensus	379		99.68
PRK12739	691	elongation factor G; Reviewed	99.68
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.68
PLN00043	447	elongation factor 1-alpha; Provisional	99.66
KOG1489|consensus	366		99.65
COG1160	444	Predicted GTPases [General function prediction onl	99.65
COG2262	411	HflX GTPases [General function prediction only]	99.65
CHL00071	409	tufA elongation factor Tu	99.65
COG0218	200	Predicted GTPase [General function prediction only	99.65
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.65
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.65
COG3596	296	Predicted GTPase [General function prediction only	99.65
KOG0462|consensus	650		99.64
PRK00049	396	elongation factor Tu; Reviewed	99.64
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.63
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.63
PLN03126	478	Elongation factor Tu; Provisional	99.62
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.62
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.61
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.6
PRK12740	668	elongation factor G; Reviewed	99.6
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.6
KOG3905|consensus	473		99.6
KOG0077|consensus	193		99.59
PTZ00141	446	elongation factor 1- alpha; Provisional	99.59
PLN03127	447	Elongation factor Tu; Provisional	99.59
KOG0090|consensus	238		99.58
KOG1145|consensus	683		99.58
KOG1144|consensus	1064		99.56
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.56
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.54
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.54
COG0536	369	Obg Predicted GTPase [General function prediction	99.54
KOG1532|consensus	366		99.53
COG1163	365	DRG Predicted GTPase [General function prediction	99.52
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.52
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.51
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.5
KOG1191|consensus	531		99.49
PRK09602	396	translation-associated GTPase; Reviewed	99.48
PRK14845	1049	translation initiation factor IF-2; Provisional	99.46
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.45
PRK13768	253	GTPase; Provisional	99.44
COG1084	346	Predicted GTPase [General function prediction only	99.43
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.43
PRK09866	741	hypothetical protein; Provisional	99.4
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.39
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.36
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.36
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.35
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.34
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.34
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.33
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.33
KOG1707|consensus	625		99.31
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.31
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.3
PTZ00416	836	elongation factor 2; Provisional	99.29
KOG1490|consensus	620		99.27
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.26
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.25
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.25
PRK07560	731	elongation factor EF-2; Reviewed	99.23
PTZ00258	390	GTP-binding protein; Provisional	99.22
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.22
KOG0461|consensus	522		99.19
KOG0458|consensus	603		99.16
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.16
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.14
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.14
KOG3886|consensus	295		99.12
KOG0465|consensus	721		99.12
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.1
PRK09601	364	GTP-binding protein YchF; Reviewed	99.08
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.07
KOG0705|consensus	749		99.07
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.04
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.03
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.02
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.0
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.95
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.94
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.93
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.92
KOG0410|consensus	410		98.89
KOG0082|consensus	354		98.89
KOG0468|consensus	971		98.89
KOG0467|consensus	887		98.86
KOG1486|consensus	364		98.85
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.85
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.84
KOG1143|consensus	591		98.78
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.77
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.76
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.76
PRK12289	352	GTPase RsgA; Reviewed	98.76
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.75
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.73
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.73
PRK00098	298	GTPase RsgA; Reviewed	98.71
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.69
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.68
KOG2486|consensus	320		98.68
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.67
KOG3887|consensus	347		98.67
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.64
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.63
PRK12288	347	GTPase RsgA; Reviewed	98.62
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.61
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.6
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.58
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.55
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.53
PRK10416	318	signal recognition particle-docking protein FtsY;	98.52
KOG0464|consensus	753		98.52
KOG4273|consensus	418		98.51
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.49
KOG2655|consensus	366		98.48
COG1161	322	Predicted GTPases [General function prediction onl	98.45
PRK14974	336	cell division protein FtsY; Provisional	98.41
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.4
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.39
KOG1547|consensus	336		98.38
KOG1954|consensus	532		98.36
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.35
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.32
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.31
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.3
KOG0463|consensus	641		98.27
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.26
KOG0460|consensus	449		98.25
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.24
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.21
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.18
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.16
PRK12288	347	GTPase RsgA; Reviewed	98.16
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.14
PRK12289	352	GTPase RsgA; Reviewed	98.13
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.12
PRK13796	365	GTPase YqeH; Provisional	98.11
KOG1487|consensus	358		98.1
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.08
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.07
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.06
KOG3929|consensus	363		98.06
KOG1491|consensus	391		98.05
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.04
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.04
KOG0447|consensus	980		98.03
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.03
cd03112	158	CobW_like The function of this protein family is u	98.03
PRK13796	365	GTPase YqeH; Provisional	98.02
KOG0099|consensus	379		98.01
PRK01889	356	GTPase RsgA; Reviewed	98.01
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.01
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.0
KOG1534|consensus	273		97.96
KOG0448|consensus	749		97.95
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.94
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.92
TIGR00959	428	ffh signal recognition particle protein. This mode	97.91
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.9
PRK13695	174	putative NTPase; Provisional	97.89
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.89
KOG0466|consensus	466		97.86
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.86
PRK00098	298	GTPase RsgA; Reviewed	97.83
KOG1424|consensus	562		97.81
COG3523	1188	IcmF Type VI protein secretion system component Va	97.8
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.77
COG1162	301	Predicted GTPases [General function prediction onl	97.76
PRK10867	433	signal recognition particle protein; Provisional	97.75
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	97.75
COG1162	301	Predicted GTPases [General function prediction onl	97.74
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.72
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.7
KOG1533|consensus	290		97.7
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.69
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.67
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.67
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.58
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.57
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.55
KOG2485|consensus	335		97.51
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.5
cd03114	148	ArgK-like The function of this protein family is u	97.5
KOG0780|consensus	483		97.48
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.47
KOG3859|consensus	406		97.46
KOG0084|consensus	205		97.46
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.44
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.39
KOG0459|consensus	501		97.38
KOG2484|consensus	435		97.37
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.36
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	97.34
KOG0469|consensus	842		97.31
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.29
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.27
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.25
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.24
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.23
PRK08118	167	topology modulation protein; Reviewed	97.22
cd03111	106	CpaE_like This protein family consists of proteins	97.21
KOG2423|consensus	572		97.21
PRK07261	171	topology modulation protein; Provisional	97.19
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.18
KOG0079|consensus	198		97.11
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.1
KOG0080|consensus	209		97.09
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.05
KOG0085|consensus	359		97.04
KOG0087|consensus	222		97.03
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.02
KOG0098|consensus	216		97.0
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	96.97
COG0523	323	Putative GTPases (G3E family) [General function pr	96.97
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.95
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.95
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.92
smart00382	148	AAA ATPases associated with a variety of cellular	96.91
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.9
KOG0083|consensus	192		96.9
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.9
PRK03839	180	putative kinase; Provisional	96.88
cd02036	179	MinD Bacterial cell division requires the formatio	96.87
PRK06217	183	hypothetical protein; Validated	96.86
PF00004	132	AAA: ATPase family associated with various cellula	96.82
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.81
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.79
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.78
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.78
KOG0078|consensus	207		96.78
PRK14530	215	adenylate kinase; Provisional	96.78
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.74
PRK14532	188	adenylate kinase; Provisional	96.73
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.73
PRK00625	173	shikimate kinase; Provisional	96.73
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.72
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.7
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.69
PRK13949	169	shikimate kinase; Provisional	96.66
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.66
KOG3347|consensus	176		96.65
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.64
PRK10646	153	ADP-binding protein; Provisional	96.64
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.63
CHL00072	290	chlL photochlorophyllide reductase subunit L	96.63
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.62
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.62
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.62
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.6
PRK02496	184	adk adenylate kinase; Provisional	96.6
PRK14737	186	gmk guanylate kinase; Provisional	96.6
PRK14531	183	adenylate kinase; Provisional	96.58
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.58
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.58
PTZ00088	229	adenylate kinase 1; Provisional	96.57
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.57
PRK01889	356	GTPase RsgA; Reviewed	96.56
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	96.54
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.53
COG1161	322	Predicted GTPases [General function prediction onl	96.53
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.53
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.5
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.5
KOG0094|consensus	221		96.5
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.46

>KOG0084|consensus

Probab=100.00  E-value=6.3e-45  Score=269.88  Aligned_cols=200  Identities=50%  Similarity=0.897  Sum_probs=181.8

Q ss_pred             CccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcC
Q psy9621           2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRG   81 (253)
Q Consensus         2 ~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   81 (253)
                      ....+++.+||+|+|+.|||||+|+.||..+.|.+.+..|+|+++..+++.++++.++++||||+|+++|+.+...|+++
T Consensus         2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~   81 (205)
T KOG0084|consen    2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG   81 (205)
T ss_pred             CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence            45578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621          82 AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI  161 (253)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      ++++|||||+++.+||..+..|+.++.++...++|.++||||+|+.                                  
T Consensus        82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~----------------------------------  127 (205)
T KOG0084|consen   82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT----------------------------------  127 (205)
T ss_pred             CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH----------------------------------
Confidence            9999999999999999999999999999998999999999999998                                  


Q ss_pred             HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCc-eEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCC--CCCeEe
Q psy9621         162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVR-FMETSAKANINIEKAFIELATAIYDKTSGRDPLE--APDRVT  238 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~--~~~~~~  238 (253)
                                  +.+.     ++.++++.|+.+++++ ++++||+++.||+++|..|...+..++..+....  +...+.
T Consensus       128 ------------~~~~-----v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~~~~~~~~~~~q  190 (205)
T KOG0084|consen  128 ------------EKRV-----VSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLHVKWSTASLESVQ  190 (205)
T ss_pred             ------------hhee-----cCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccCCCCCcCCCCcee
Confidence                        4454     7888999999999998 9999999999999999999999988877666655  345566


Q ss_pred             ecCCCCCCCCCCCCC
Q psy9621         239 IDKKPDRGGMAGGCC  253 (253)
Q Consensus       239 ~~~~~~~~~~~~~c~  253 (253)
                      +.. .+.+.+.++||
T Consensus       191 l~~-~p~~~~~~~~C  204 (205)
T KOG0084|consen  191 LKG-TPVKKSNGGCC  204 (205)
T ss_pred             eCC-CCcccccCCCC
Confidence            655 45555677788

>KOG0078|consensus

Probab=100.00  E-value=3.9e-42  Score=258.81  Aligned_cols=177  Identities=72%  Similarity=1.157  Sum_probs=169.1

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR   80 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (253)
                      |++.++++.+||+++|++|||||+|+.+|..+.|...+..|+|+++...++.+++..+.+++|||+|+++|+.+...|++
T Consensus         4 ~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyr   83 (207)
T KOG0078|consen    4 MAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYR   83 (207)
T ss_pred             cccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHh
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      ++.++++|||+++..||+++..|+..|.++...++|+++||||+|+.                                 
T Consensus        84 gA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~---------------------------------  130 (207)
T KOG0078|consen   84 GAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE---------------------------------  130 (207)
T ss_pred             hcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc---------------------------------
Confidence            99999999999999999999999999999998899999999999998                                 


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR  228 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  228 (253)
                                   ..++     +..+.++++|.++|++++||||++|.||+++|..|.+.+..+....
T Consensus       131 -------------~~R~-----V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~~  180 (207)
T KOG0078|consen  131 -------------EKRQ-----VSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLEDA  180 (207)
T ss_pred             -------------cccc-----ccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcchh
Confidence                         4455     8889999999999999999999999999999999999999766544

>KOG0092|consensus

Probab=100.00  E-value=9e-42  Score=252.17  Aligned_cols=195  Identities=35%  Similarity=0.635  Sum_probs=174.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+++|+.+||||||+.||..+.|++...||+|..|..+++.+.+..+++.||||+|+++|+++..+|+|+++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            35789999999999999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      +|||+++.+||..+..|+.++.+...+++-+.++|||+|+.                                       
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~---------------------------------------  123 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLL---------------------------------------  123 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhh---------------------------------------
Confidence            99999999999999999999999998889999999999998                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCC--CCeEeecCCCC
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEA--PDRVTIDKKPD  244 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~  244 (253)
                             ..++     +..+++..+++..+..+|++||+||.||+++|..|.+.+.........-.+  +..+++++..+
T Consensus       124 -------~~R~-----V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~~  191 (200)
T KOG0092|consen  124 -------ERRE-----VEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQERQGLPNRRQGVDLNSNQE  191 (200)
T ss_pred             -------hccc-----ccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCccccccccccccccceecccCCC
Confidence                   4455     889999999999999999999999999999999999999988776665222  25666665532


Q ss_pred             CCCCCCCCC
Q psy9621         245 RGGMAGGCC  253 (253)
Q Consensus       245 ~~~~~~~c~  253 (253)
                      +. .+++||
T Consensus       192 ~~-~~~~~C  199 (200)
T KOG0092|consen  192 PA-RPSGCC  199 (200)
T ss_pred             Cc-CcCCcC
Confidence            22 256666

>KOG0098|consensus

Probab=100.00  E-value=1.5e-40  Score=243.71  Aligned_cols=171  Identities=50%  Similarity=0.899  Sum_probs=163.5

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      +.+.+|++++|+.|||||+|+.+|....|.+.+..|+|+++....+.++++.+++++|||.|++.|....+.|++++.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      |+|||++.++||..+..|+..+.++...++-++++|||+|+.                                      
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~--------------------------------------  124 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE--------------------------------------  124 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh--------------------------------------
Confidence            999999999999999999999999988999999999999998                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSG  227 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  227 (253)
                              ..++     +..+++++||+++|+.++++||++++||+++|..+...++++.+.
T Consensus       125 --------~rR~-----Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q~  173 (216)
T KOG0098|consen  125 --------ARRE-----VSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQD  173 (216)
T ss_pred             --------cccc-----ccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence                    5555     899999999999999999999999999999999999999887653

>KOG0094|consensus

Probab=100.00  E-value=1e-39  Score=241.26  Aligned_cols=186  Identities=37%  Similarity=0.642  Sum_probs=167.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+|++|+|+.+||||||++||.+..|...|.+|+|+||...++.+.+..+.+++|||+|+++|+.+...|++++.++|+|
T Consensus        22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviV  101 (221)
T KOG0094|consen   22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV  101 (221)
T ss_pred             EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEE
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhccc-ccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHANE-DVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||+++..||+...+|++.++...+. ++-+++||||.||.                                        
T Consensus       102 yDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~----------------------------------------  141 (221)
T KOG0094|consen  102 YDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLS----------------------------------------  141 (221)
T ss_pred             EeccccchHHHHHHHHHHHHhccCCCceEEEEEccccccc----------------------------------------
Confidence            9999999999999999999998876 48899999999998                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC--CCCCCCCeEeecCCCCC
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR--DPLEAPDRVTIDKKPDR  245 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  245 (253)
                            +.++     +..++++..+++++..|+++||++|.||..+|..|...+...+..+  ..+.++..+++...++.
T Consensus       142 ------dkrq-----vs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~~~~~~~~~~~~~i~~k~~~~~  210 (221)
T KOG0094|consen  142 ------DKRQ-----VSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEVLEILSKQESMVDINLKGSPNE  210 (221)
T ss_pred             ------chhh-----hhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccccccccccccceeEEccCCCCc
Confidence                  5566     8888999999999999999999999999999999999998875543  22333666666633333

>KOG0394|consensus

Probab=100.00  E-value=5.5e-40  Score=240.35  Aligned_cols=178  Identities=37%  Similarity=0.659  Sum_probs=165.4

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR   80 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (253)
                      |....+...+||+++|++|+|||||+++|.+.+|...+..|+|.++.++.+.++++.+.++||||+|+++|..+...|++
T Consensus         1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR   80 (210)
T KOG0394|consen    1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR   80 (210)
T ss_pred             CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence            77777788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcc----cccceeEEeeeeccccccccccccccccccceeeEEEEeccCcc
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEK  156 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (253)
                      ++|-+++|||++++.||+++..|..++..+..    ...|++|+|||+|+.+.                           
T Consensus        81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~---------------------------  133 (210)
T KOG0394|consen   81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG---------------------------  133 (210)
T ss_pred             CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC---------------------------
Confidence            99999999999999999999999999988874    46899999999999643                           


Q ss_pred             chhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621         157 SFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKTSG  227 (253)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  227 (253)
                                       +.+.     ++...+++||+..| +||||+||+.+.||+++|..+.+..+..+..
T Consensus       134 -----------------~~r~-----VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  134 -----------------KSRQ-----VSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANEDR  183 (210)
T ss_pred             -----------------ccce-----eeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccch
Confidence                             2244     78889999999988 8999999999999999999999999998865

>KOG0080|consensus

Probab=100.00  E-value=2.6e-39  Score=231.46  Aligned_cols=198  Identities=42%  Similarity=0.753  Sum_probs=176.6

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      .+...+||++||.+|||||||+-+|....|++....|+|+++..+.+.+++..+++-||||+|+++|+.+...|++++-+
T Consensus         7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG   86 (209)
T KOG0080|consen    7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG   86 (209)
T ss_pred             CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence            34567999999999999999999999999999988889999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|+|||++.+++|..+..|+.++.-++. +++-.++||||+|..                                    
T Consensus        87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke------------------------------------  130 (209)
T KOG0080|consen   87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE------------------------------------  130 (209)
T ss_pred             eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch------------------------------------
Confidence            9999999999999999999999988874 789999999999975                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeecCCC
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKP  243 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (253)
                                .++.     +..+++..|++++++-++++||++.+||...|++++..+++-..--+.-.+...+++-..+
T Consensus       131 ----------s~R~-----V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp~l~~~~n~~~~~~i~~~p  195 (209)
T KOG0080|consen  131 ----------SERV-----VDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETPSLWEEGNSSAGLDIASDP  195 (209)
T ss_pred             ----------hccc-----ccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCcchhhccCCccccccccCC
Confidence                      3455     8999999999999999999999999999999999999998866655554555666666666


Q ss_pred             CCC--CCCCCCC
Q psy9621         244 DRG--GMAGGCC  253 (253)
Q Consensus       244 ~~~--~~~~~c~  253 (253)
                      ...  ...+|||
T Consensus       196 ~~~~~~~~g~~C  207 (209)
T KOG0080|consen  196 DGEASAHQGGCC  207 (209)
T ss_pred             CcccccccCCcc
Confidence            655  3347798

>KOG0079|consensus

Probab=100.00  E-value=2.1e-40  Score=233.86  Aligned_cols=196  Identities=43%  Similarity=0.808  Sum_probs=173.8

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      .-++..++.+++|++|+|||+|+.+|....|..+|..|+|+++..+++.+++..++++||||+|++.|+.+...++++.+
T Consensus         3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth   82 (198)
T KOG0079|consen    3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH   82 (198)
T ss_pred             ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ++++|||+++.+||.++.+|++++++.+ ..+|-++||||.|.++                                   
T Consensus        83 gv~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~-----------------------------------  126 (198)
T KOG0079|consen   83 GVIVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPE-----------------------------------  126 (198)
T ss_pred             eEEEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCcc-----------------------------------
Confidence            9999999999999999999999999998 6899999999999873                                   


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeecCCC
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKP  243 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (253)
                                 .+.     +..++++.|+...|+.+|++||++++|++..|.-|.+...+..+...+.. -+...+..++
T Consensus       127 -----------Rrv-----V~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k~r~~~~~-~r~~~~~l~~  189 (198)
T KOG0079|consen  127 -----------RRV-----VDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAKLRESVEQ-QRADAVSLKD  189 (198)
T ss_pred             -----------cee-----eehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHHHhhcHHH-HhhcceEecc
Confidence                       333     77788999999999999999999999999999999999988663322222 3445556677


Q ss_pred             CCCCCCCCCC
Q psy9621         244 DRGGMAGGCC  253 (253)
Q Consensus       244 ~~~~~~~~c~  253 (253)
                      ++|++| .||
T Consensus       190 n~~~~~-k~c  198 (198)
T KOG0079|consen  190 NSKSTK-KCC  198 (198)
T ss_pred             CCCccc-cCC
Confidence            777666 676

>KOG0087|consensus

Probab=100.00  E-value=4.4e-39  Score=241.17  Aligned_cols=172  Identities=46%  Similarity=0.819  Sum_probs=162.7

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      ..+++.+||+++|++|||||-|+.||....|.....+|+|+++...++.++++.++.+||||+|+++|+.....|++++.
T Consensus         9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv   88 (222)
T KOG0087|consen    9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV   88 (222)
T ss_pred             cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ++++|||++.+.+|+.+.+|+.+++.|...++++++||||+||.                                    
T Consensus        89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~------------------------------------  132 (222)
T KOG0087|consen   89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN------------------------------------  132 (222)
T ss_pred             eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh------------------------------------
Confidence            99999999999999999999999999999999999999999997                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                ..+.     +..++++.+++..+..++++||.++.||+.+|..++..+..+-.
T Consensus       133 ----------~lra-----V~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs  180 (222)
T KOG0087|consen  133 ----------HLRA-----VPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVS  180 (222)
T ss_pred             ----------hccc-----cchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHH
Confidence                      3333     78889999999999999999999999999999999988876443

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=4.9e-37  Score=237.53  Aligned_cols=179  Identities=45%  Similarity=0.760  Sum_probs=157.0

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      .++.+||+|+|+.|||||||+++|..+.+...+.++.+.++...++.+++..+.+++|||+|++.|..++..+++++|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            56789999999999999999999999989888888888888878888888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      |+|||++++.+|+.+..|++++..+. +++|++|||||.|+.                                      
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~--------------------------------------  123 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLA--------------------------------------  123 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccch--------------------------------------
Confidence            99999999999999999999998776 689999999999996                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeE
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRV  237 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~  237 (253)
                              ..+.     +..++++.+++.+++++++|||++|.||+++|.+|.+.+.... .+.|+.++.+.
T Consensus       124 --------~~~~-----v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~-~~~~~~~~~~~  181 (189)
T cd04121         124 --------FKRQ-----VATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRH-GRPPQSPPQNC  181 (189)
T ss_pred             --------hccC-----CCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CCCCCCCCccc
Confidence                    2233     5667889999999999999999999999999999999887533 24444444433

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=4.9e-37  Score=240.90  Aligned_cols=193  Identities=35%  Similarity=0.652  Sum_probs=161.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      +||+|+|++|||||||+++|..+.+...+.+|++.++....+.++ +..+.+.+|||+|++.|..++..++++++++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999988899999988887778777 7789999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc----ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHA----NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      ||++++++|+.+..|+..+....    ..++|+++|+||+|+.                                     
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~-------------------------------------  123 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK-------------------------------------  123 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc-------------------------------------
Confidence            99999999999999999887643    2679999999999986                                     


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCC--eEeecC
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPD--RVTIDK  241 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~~~  241 (253)
                               ..+.     +..++..++++..+ .+++++||++|.|++++|.+|.+.+........+...+.  .+....
T Consensus       124 ---------~~~~-----~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  189 (201)
T cd04107         124 ---------KRLA-----KDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILANDKNLQQAETPEDGSVIDLK  189 (201)
T ss_pred             ---------cccc-----cCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhchhhHhhcCCCcccccccc
Confidence                     2222     55667889999998 699999999999999999999999988665444444332  222333


Q ss_pred             CCCCCCCCCCCC
Q psy9621         242 KPDRGGMAGGCC  253 (253)
Q Consensus       242 ~~~~~~~~~~c~  253 (253)
                      ....+++..+||
T Consensus       190 ~~~~~~~~~~~~  201 (201)
T cd04107         190 QTTTKKKSKGCC  201 (201)
T ss_pred             cceeccccCCCC
Confidence            344445566899

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=2e-36  Score=238.80  Aligned_cols=206  Identities=26%  Similarity=0.443  Sum_probs=155.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+|+|.+|||||||+++|..+.+.. +.++++.++....+    ..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998875 57888876654433    4678999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      |++++.+|+.+..|+..+.+....++|++||+||+|+..+........                  +. ..         
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~------------------~~-~~---------  127 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEK------------------DA-GD---------  127 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccc------------------cc-cc---------
Confidence            999999999999888888776557899999999999963211000000                  00 00         


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhC--------------CceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCC
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYG--------------VRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPD  235 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~  235 (253)
                          .......+.+..+++.+++++++              ++|++|||++|.||+++|..+++.+......+.......
T Consensus       128 ----~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~  203 (220)
T cd04126         128 ----RVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRT  203 (220)
T ss_pred             ----cccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence                00000011267778889998876              689999999999999999999998887665554433222


Q ss_pred             eEeecCCCCCCCCCCCCC
Q psy9621         236 RVTIDKKPDRGGMAGGCC  253 (253)
Q Consensus       236 ~~~~~~~~~~~~~~~~c~  253 (253)
                      ...+ .-++++++|++||
T Consensus       204 ~~~~-~~~~~~~~~~~~~  220 (220)
T cd04126         204 QGTV-NLPNPKRSKSKCC  220 (220)
T ss_pred             hccc-cCCCcccCCCCCC
Confidence            2222 3455777899999

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0086|consensus

Probab=100.00  E-value=3.8e-37  Score=218.65  Aligned_cols=178  Identities=42%  Similarity=0.758  Sum_probs=168.1

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR   80 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (253)
                      |-+.++++.+|++++|++|+|||+|+++|...+|.....-|+|+++....+++.++.++++||||+|+++|+...+.|++
T Consensus         1 mmsEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYR   80 (214)
T KOG0086|consen    1 MMSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYR   80 (214)
T ss_pred             CcchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhc
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      ++.++++|||++++++|+.+..|+..++-...+++-++++|||.|+.                                 
T Consensus        81 GAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~---------------------------------  127 (214)
T KOG0086|consen   81 GAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD---------------------------------  127 (214)
T ss_pred             cccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC---------------------------------
Confidence            99999999999999999999999999999998999999999999998                                 


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCC
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD  229 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~  229 (253)
                                   +.++     +...++.+||++..+.+.++||+||+||++.|-...+.++.+.+...
T Consensus       128 -------------~~R~-----VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GE  178 (214)
T KOG0086|consen  128 -------------PERE-----VTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIESGE  178 (214)
T ss_pred             -------------hhhh-----hhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcC
Confidence                         5566     78889999999999999999999999999999999999988776443

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=5e-36  Score=234.02  Aligned_cols=165  Identities=49%  Similarity=0.908  Sum_probs=149.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +.|+++|+.|||||||+++|..+.|...+.+|++.++....+.+++..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            36899999999999999999999999999999999998888889988999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      |+++++||+.+..|+..+.+....++|+++||||+|+.                                          
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~------------------------------------------  118 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE------------------------------------------  118 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc------------------------------------------
Confidence            99999999999999999887766789999999999986                                          


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHh-CCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                          ..++     +...+++++++++ ++.+++|||++|.||+++|.+|++.+....
T Consensus       119 ----~~~~-----v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~  166 (202)
T cd04120         119 ----TDRE-----ISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM  166 (202)
T ss_pred             ----cccc-----cCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhC
Confidence                2233     5666778888886 789999999999999999999999887653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=9.7e-36  Score=233.07  Aligned_cols=196  Identities=44%  Similarity=0.818  Sum_probs=162.1

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      +++.+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..++++++++
T Consensus         3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            45689999999999999999999999999888899999888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      |+|||++++++|+.+..|++.+.... ..+|++||+||+|+.                                      
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~--------------------------------------  123 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDP--------------------------------------  123 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccc--------------------------------------
Confidence            99999999999999999999987765 679999999999986                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCC-eEeecCCCC
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPD-RVTIDKKPD  244 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~  244 (253)
                              +...     +...+...+++..+++++++||++|.||+++|++|.+.+......+......+ ..+....+-
T Consensus       124 --------~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (199)
T cd04110         124 --------ERKV-----VETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLPK  190 (199)
T ss_pred             --------cccc-----cCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhhccCcccccCCccccCccch
Confidence                    2222     44566778888889999999999999999999999999987655554443332 222222222


Q ss_pred             CCCCCCCCC
Q psy9621         245 RGGMAGGCC  253 (253)
Q Consensus       245 ~~~~~~~c~  253 (253)
                      ..+++..||
T Consensus       191 ~~~~~~~~~  199 (199)
T cd04110         191 NSKRKKRCC  199 (199)
T ss_pred             hccccccCC
Confidence            223477787

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1.4e-35  Score=234.87  Aligned_cols=172  Identities=46%  Similarity=0.840  Sum_probs=153.9

Q ss_pred             CccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcC
Q psy9621           2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRG   81 (253)
Q Consensus         2 ~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   81 (253)
                      ..+..++.+||+++|++|||||||+++|.++.+...+.++++.++....+.+.+..+.+.+|||+|++++..++..++++
T Consensus         5 ~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~   84 (216)
T PLN03110          5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG   84 (216)
T ss_pred             cccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCC
Confidence            34455688999999999999999999999999888888999999988888888888999999999999999999999999


Q ss_pred             ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621          82 AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI  161 (253)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      ++++|+|||++++.+|+.+..|+..+.++...++|+++|+||+|+.                                  
T Consensus        85 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~----------------------------------  130 (216)
T PLN03110         85 AVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN----------------------------------  130 (216)
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc----------------------------------
Confidence            9999999999999999999999999988876789999999999986                                  


Q ss_pred             HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                  ..+.     +..+....++...+++++++||++|.|++++|+.|.+.+...
T Consensus       131 ------------~~~~-----~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~  176 (216)
T PLN03110        131 ------------HLRS-----VAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHI  176 (216)
T ss_pred             ------------cccC-----CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence                        2232     455667788888899999999999999999999999988663

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.8e-35  Score=230.16  Aligned_cols=190  Identities=50%  Similarity=0.851  Sum_probs=159.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      +||+++|++|||||||++++..+.+.. .+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988864 5778888888777788888889999999999999998899999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ||++++.+++.+..|+..+......++|+++++||+|+.                                         
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~-----------------------------------------  119 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS-----------------------------------------  119 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch-----------------------------------------
Confidence            999999999999999999988876789999999999986                                         


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeecCCCCCCCC
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDRGGM  248 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (253)
                           ..+.     +..++...+++.++++++++||++|.|++++|.+|.+.+...... .+.+..-+  .++.+...++
T Consensus       120 -----~~~~-----~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~  186 (191)
T cd04112         120 -----GERV-----VKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYE-QPDEGKFK--ISDYVTKQKK  186 (191)
T ss_pred             -----hccc-----cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccc-cCCCCcEE--eccccCcccc
Confidence                 2222     444567788888899999999999999999999999999877544 22222334  4444455445


Q ss_pred             CCCCC
Q psy9621         249 AGGCC  253 (253)
Q Consensus       249 ~~~c~  253 (253)
                      +.+||
T Consensus       187 ~~~~~  191 (191)
T cd04112         187 ISRCC  191 (191)
T ss_pred             cCCCC
Confidence            99999

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0093|consensus

Probab=100.00  E-value=6.7e-36  Score=210.86  Aligned_cols=174  Identities=49%  Similarity=0.884  Sum_probs=163.2

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      ..++-.|++++|...+|||||+.++.+..|.+.+.+|+|+++..+++.-..+.+++++|||.|++.|+.+...+++++++
T Consensus        17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg   96 (193)
T KOG0093|consen   17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG   96 (193)
T ss_pred             cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence            45677899999999999999999999999999999999999999999888889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      +|++||+++.+||..+..|.-.|..++-.+.|+++++||+|+.                                     
T Consensus        97 fiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd-------------------------------------  139 (193)
T KOG0093|consen   97 FILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMD-------------------------------------  139 (193)
T ss_pred             EEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCc-------------------------------------
Confidence            9999999999999999999999988888899999999999997                                     


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCC
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD  229 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~  229 (253)
                               ..+.     +..+.+++++.++|+.+||+||+.+.||+.+|..++..+.+++.++.
T Consensus       140 ---------~eRv-----is~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmsesl  190 (193)
T KOG0093|consen  140 ---------SERV-----ISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMSESL  190 (193)
T ss_pred             ---------ccee-----eeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhhhhh
Confidence                     4455     78889999999999999999999999999999999999999886543

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=3e-35  Score=228.79  Aligned_cols=169  Identities=34%  Similarity=0.595  Sum_probs=145.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD   90 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   90 (253)
                      ||+|+|++|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            6899999999999999999999998888888875553 456677788899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcc---cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          91 ITNEKSFDNILKWLRNIDEHAN---EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ++++.+|+.+..|+..+.....   .++|+++|+||+|+.                                        
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~----------------------------------------  119 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV----------------------------------------  119 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc----------------------------------------
Confidence            9999999999999999876642   579999999999986                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCC
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPL  231 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~  231 (253)
                            ....     +...+..++++.++++++++||++|.|++++|.++.+.+..++....++
T Consensus       120 ------~~~~-----v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~~~~~  172 (190)
T cd04144         120 ------YERE-----VSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQGP  172 (190)
T ss_pred             ------ccCc-----cCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhcccCCC
Confidence                  2222     4455667888888999999999999999999999999888766655433

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=4e-35  Score=225.79  Aligned_cols=176  Identities=22%  Similarity=0.499  Sum_probs=148.0

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      +...+||+++|++|||||||+++|..+.+...+.||++.++. ..+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            356789999999999999999999999999999999986664 5677888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          86 MLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        86 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      |+|||++++.||+.+ ..|+..+.++. ++.|+++||||+|+....                            ..+   
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~----------------------------~~~---  128 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDL----------------------------TTL---  128 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcCh----------------------------hhH---
Confidence            999999999999997 79999998876 679999999999985210                            000   


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCC-HHHHHHHHHHHHH
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANIN-IEKAFIELATAIY  222 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g-i~~l~~~l~~~~~  222 (253)
                       .++...  ..+.     +..++++++++++++ +|+||||++|.| |+++|..+++...
T Consensus       129 -~~~~~~--~~~~-----v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         129 -VELSNH--RQTP-----VSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             -HHHHhc--CCCC-----CCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence             000000  1122     677889999999995 999999999998 9999999998654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0088|consensus

Probab=100.00  E-value=4.2e-36  Score=214.56  Aligned_cols=197  Identities=36%  Similarity=0.671  Sum_probs=171.5

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      .-..+|++++|.-=||||||+-||...+|.....+|+...|..+.+++.+....++||||+|+++|..+...|+++.+++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            45678999999999999999999999999988888888888889999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      ++|||+++++||+.+..|..+++....+.+.++|||||+|+.                                      
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE--------------------------------------  131 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE--------------------------------------  131 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH--------------------------------------
Confidence            999999999999999999999999999999999999999998                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCC---------CCCCCCC-C
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSG---------RDPLEAP-D  235 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~---------~~~~~~~-~  235 (253)
                              +.+.     +..++++.+++.-|..++++||+.+.||.++|..|...+.+..+.         ..|+... -
T Consensus       132 --------eeR~-----Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~  198 (218)
T KOG0088|consen  132 --------EERQ-----VTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRS  198 (218)
T ss_pred             --------Hhhh-----hhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhhhcccccCCcCCCCCCcccc
Confidence                    4555     888999999999999999999999999999999999988775421         1111111 1


Q ss_pred             eEeecCCCCCCCCCCCCC
Q psy9621         236 RVTIDKKPDRGGMAGGCC  253 (253)
Q Consensus       236 ~~~~~~~~~~~~~~~~c~  253 (253)
                      ...++..++.+.+.++||
T Consensus       199 ~~~iD~e~~a~~sg~~CC  216 (218)
T KOG0088|consen  199 IRLIDNEAEAERSGKRCC  216 (218)
T ss_pred             hhccCCCcccccccCCcc
Confidence            233445556677788899

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=1.2e-34  Score=229.62  Aligned_cols=165  Identities=30%  Similarity=0.537  Sum_probs=147.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCC-eEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKG-KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      +||+++|++|||||||+++|..+.+...+.++.+.++....+.+.+ ..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999999999999998888887764 578999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcc---cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHAN---EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      ||++++++|+.+..|+..+.+...   .++|+++|+||+|+.                                      
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~--------------------------------------  122 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE--------------------------------------  122 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc--------------------------------------
Confidence            999999999999999999987652   457899999999986                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                              ..+.     +...+..++++.++++++++||++|.|++++|++|.+.+....
T Consensus       123 --------~~~~-----v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~~  169 (215)
T cd04109         123 --------HNRT-----VKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGVD  169 (215)
T ss_pred             --------cccc-----cCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence                    2233     5556778899999999999999999999999999999988654

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=1.4e-34  Score=229.61  Aligned_cols=179  Identities=21%  Similarity=0.447  Sum_probs=149.7

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      +....+||+|+|++|||||||+++|..+.|...+.||++.++. ..+.+++..+.+.+|||+|++.|..++..+++++|+
T Consensus         9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~   87 (232)
T cd04174           9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA   87 (232)
T ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence            4456789999999999999999999999999999999987775 457788899999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          85 IMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|+|||++++++|+.+ ..|+..+.... ++.|+++||||+|+.....                            .+. 
T Consensus        88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~----------------------------~~~-  137 (232)
T cd04174          88 VLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLS----------------------------TLM-  137 (232)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccc----------------------------hhh-
Confidence            9999999999999984 79999998776 5789999999999852100                            000 


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCC-CHHHHHHHHHHHHHhc
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANI-NIEKAFIELATAIYDK  224 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-gi~~l~~~l~~~~~~~  224 (253)
                         ++..  ...+.     +..++++++|+++++ +|++|||++|. ||+++|..+++.+.++
T Consensus       138 ---~l~~--~~~~~-----Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         138 ---ELSN--QKQAP-----ISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             ---hhcc--ccCCc-----CCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence               0000  01122     677789999999998 69999999998 8999999999988764

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=6.6e-35  Score=223.27  Aligned_cols=169  Identities=27%  Similarity=0.561  Sum_probs=144.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|||||||+.+|..+.|...+.||++..+. ..+.+++..+.+.+|||+|+++|..++..++++++++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            79999999999999999999999999999999986664 45677888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          90 DITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        90 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      |+++++||+.+ ..|+..+.+.. .++|++|||||+|+..++..                                    
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~------------------------------------  123 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQY------------------------------------  123 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhh------------------------------------
Confidence            99999999998 68999998775 57999999999999632110                                    


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                           .........+..++++++++.+++ +++||||++|.||+++|..+.+.+
T Consensus       124 -----~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         124 -----LADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             -----hhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence                 000000111667788999999997 699999999999999999999876

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0091|consensus

Probab=100.00  E-value=1e-35  Score=213.67  Aligned_cols=197  Identities=37%  Similarity=0.676  Sum_probs=167.6

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      ..+.++++|||++-+|||+|++.|..+++++-.+||+|+|+....+.+. +..+++++|||+|+++|+.....|+++.-+
T Consensus         5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg   84 (213)
T KOG0091|consen    5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG   84 (213)
T ss_pred             eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence            3567899999999999999999999999999999999999988877664 778999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      +++|||+++++||+.+..|+.+-.-+..  ..+-+++||.|+|+.                                   
T Consensus        85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~-----------------------------------  129 (213)
T KOG0091|consen   85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ-----------------------------------  129 (213)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh-----------------------------------
Confidence            9999999999999999999998766653  345678899999998                                   


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCC--------CCCC
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDP--------LEAP  234 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~--------~~~~  234 (253)
                                 ..++     +..++++.+++.+|+.++||||++|.||+++|.-|.+.+........-        ..+.
T Consensus       130 -----------SqRq-----Vt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~qGeik~edgw~gvKSs  193 (213)
T KOG0091|consen  130 -----------SQRQ-----VTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQGEIKLEDGWGGVKSS  193 (213)
T ss_pred             -----------hhcc-----ccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhcCceeeeecccccccc
Confidence                       4555     889999999999999999999999999999999999999887665332        1123


Q ss_pred             CeEeecCCCCC-CCCCCCCC
Q psy9621         235 DRVTIDKKPDR-GGMAGGCC  253 (253)
Q Consensus       235 ~~~~~~~~~~~-~~~~~~c~  253 (253)
                      .+-.+...+.. +.+|++||
T Consensus       194 rpn~i~~s~~~~~P~k~c~C  213 (213)
T KOG0091|consen  194 RPNQIPRSPSRKQPSKPCQC  213 (213)
T ss_pred             CCCcCCCcccccCCCCCCCC
Confidence            34444444444 45567777

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=1.2e-34  Score=220.76  Aligned_cols=164  Identities=41%  Similarity=0.799  Sum_probs=148.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+++|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..++++++++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            58999999999999999999999999888888998888877788888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ||++++.+|+.+..|+..+......+.|+++++||+|+.                                         
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~-----------------------------------------  120 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE-----------------------------------------  120 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----------------------------------------
Confidence            999999999999999999887766789999999999996                                         


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                           ..+.     +..++..++++..+++++++||++|.|++++|..+.+.+.+
T Consensus       121 -----~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~  165 (166)
T cd04122         121 -----AQRD-----VTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ  165 (166)
T ss_pred             -----cccC-----cCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence                 2232     45567788898889999999999999999999999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0095|consensus

Probab=100.00  E-value=1.9e-35  Score=209.30  Aligned_cols=172  Identities=48%  Similarity=0.821  Sum_probs=160.2

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      -+.+.+||+++|.+|+|||+|+++|..+-|++....|+|+++..+++.+++..+++++|||+|+++|+.....|++.+++
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha   82 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA   82 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      +|+|||++-..+|..+.+|+.+|.++....+..++||||+|+.                                     
T Consensus        83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~-------------------------------------  125 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLA-------------------------------------  125 (213)
T ss_pred             EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchh-------------------------------------
Confidence            9999999999999999999999999998899999999999998                                     


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSG  227 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  227 (253)
                               +.++     ++...+++|++...+-+.++||++..|++.||..+.-.+......
T Consensus       126 ---------drre-----vp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~~ar~  174 (213)
T KOG0095|consen  126 ---------DRRE-----VPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISEARQ  174 (213)
T ss_pred             ---------hhhh-----hhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHh
Confidence                     5555     778889999999999999999999999999999988777654433

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=1.9e-34  Score=219.75  Aligned_cols=166  Identities=70%  Similarity=1.168  Sum_probs=149.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ++.+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            46899999999999999999999999999999999998888778888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      +|||++++.+|..+..|+..+.++...++|+++++||+|+.                                       
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~---------------------------------------  121 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME---------------------------------------  121 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc---------------------------------------
Confidence            99999999999999999999988766789999999999996                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                             ..+.     +..++..++++.++++++++||++|.|++++|.++.+.+..
T Consensus       122 -------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         122 -------EKRV-----VSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             -------cccC-----CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence                   2222     44456778888889999999999999999999999998865

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.6e-34  Score=221.89  Aligned_cols=173  Identities=22%  Similarity=0.496  Sum_probs=145.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      ++||+++|++|||||||+++|..+.+...+.||++.++. ..+.+++..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            479999999999999999999999999999999986664 5677888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||+++++||+.+ ..|+..+.++. +++|+++||||+|+..+                            ....    .+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~----------------------------~~~~----~~  126 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTD----------------------------LSTL----ME  126 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcC----------------------------hhHH----HH
Confidence            999999999996 79999998876 68999999999998521                            0000    00


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCC-HHHHHHHHHHHHH
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANIN-IEKAFIELATAIY  222 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g-i~~l~~~l~~~~~  222 (253)
                      +...  ..+.     +..++++++++++++ ++++|||++|+| |+++|..+++..+
T Consensus       127 ~~~~--~~~~-----v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         127 LSHQ--RQAP-----VSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             HHhc--CCCC-----CCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence            0000  1122     667789999999996 899999999995 9999999999654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=4.9e-34  Score=221.63  Aligned_cols=165  Identities=47%  Similarity=0.793  Sum_probs=148.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998878899998888788888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      |++++.+|..+..|+..+......++|+++++||+|+.                                          
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~------------------------------------------  118 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV------------------------------------------  118 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc------------------------------------------
Confidence            99999999999999999988776679999999999986                                          


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                          +...     +.......+++..+++++++||++|.|++++|.+|.+.+..+.
T Consensus       119 ----~~~~-----v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~  165 (188)
T cd04125         119 ----NNKV-----VDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRL  165 (188)
T ss_pred             ----cccc-----CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence                2232     4455667888888899999999999999999999999998754

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=6.8e-34  Score=224.28  Aligned_cols=170  Identities=39%  Similarity=0.760  Sum_probs=149.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      +.+||+|+|++|||||||+++|.++.+...+.++++.++....+.+. +..+.+.+|||+|++.+..++..+++++|++|
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            35899999999999999999999999988888999988887777764 56789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.+|+.+..|+..+..... ..+|++|++||+|+.                                      
T Consensus        81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~--------------------------------------  122 (211)
T cd04111          81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE--------------------------------------  122 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc--------------------------------------
Confidence            99999999999999999999987653 467899999999986                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR  228 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  228 (253)
                              ....     +..++..++++.++++++++||++|.|++++|+.|.+.+.+++...
T Consensus       123 --------~~~~-----v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~~~  172 (211)
T cd04111         123 --------SQRQ-----VTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRG  172 (211)
T ss_pred             --------cccc-----cCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcC
Confidence                    2222     5566778899999999999999999999999999999888775544

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=7.9e-34  Score=221.38  Aligned_cols=192  Identities=29%  Similarity=0.529  Sum_probs=156.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      +||+|+|++|||||||+++|..+.+.. .+.++++.++....+.+++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988875 5788888888777888888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ||++++.+++.+..|+..+.... .++|+++|+||.|+.....                                     
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~-------------------------------------  122 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDR-------------------------------------  122 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEccccccccc-------------------------------------
Confidence            99999999999999999987754 5799999999999852100                                     


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeecCCCCCCCC
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDRGGM  248 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (253)
                           ....     +...+..+++..++++++++||++|.|++++|+.|.+.+.++...+....  ..+++..+++.  .
T Consensus       123 -----~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~--~  188 (193)
T cd04118         123 -----SLRQ-----VDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQMNTE--KGVDLGQKKNS--Y  188 (193)
T ss_pred             -----ccCc-----cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcccccCCC--CccccCCcCCC--C
Confidence                 0011     34456677888888999999999999999999999999987665442222  33334444443  4


Q ss_pred             CCCCC
Q psy9621         249 AGGCC  253 (253)
Q Consensus       249 ~~~c~  253 (253)
                      .++||
T Consensus       189 ~~~~~  193 (193)
T cd04118         189 FYSCC  193 (193)
T ss_pred             CCCCC
Confidence            88898

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=4.5e-34  Score=216.39  Aligned_cols=160  Identities=53%  Similarity=0.980  Sum_probs=145.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|||||||++++..+.+.+.+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999999999888999998888788888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      |++++.+|+.+..|+..+......++|+++++||.|+.                                          
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~------------------------------------------  118 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE------------------------------------------  118 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc------------------------------------------
Confidence            99999999999999999988765689999999999986                                          


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                          ..+.     +..++...+++.++++++++||++|.|++++|.+|.+.
T Consensus       119 ----~~~~-----v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         119 ----QKRQ-----VGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ----cccC-----CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence                2232     55677888999899999999999999999999999865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=7.2e-34  Score=216.15  Aligned_cols=163  Identities=50%  Similarity=0.892  Sum_probs=146.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++++++++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998888999998888777777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      |++++.+++.+..|+..+......+.|+++++||+|+.                                          
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~------------------------------------------  119 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME------------------------------------------  119 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC------------------------------------------
Confidence            99999999999999999987765689999999999986                                          


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                          +.+.     +..+...++++.++++++++||++|.|++++|+.+.+.+.+
T Consensus       120 ----~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (165)
T cd01865         120 ----DERV-----VSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD  164 (165)
T ss_pred             ----cccc-----cCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence                2222     44456677888888999999999999999999999987765

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=7.5e-34  Score=220.95  Aligned_cols=174  Identities=26%  Similarity=0.572  Sum_probs=144.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+++|+.|||||||+++|..+.|...+.||++.++. ..+.+++..+.+.+|||+|+++|..++..+++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            589999999999999999999999998889999986654 4466788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||++++.||+.+. .|+..+.+.. .++|++|||||.|+..++..                                ...
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~--------------------------------~~~  128 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADT--------------------------------LKK  128 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhh--------------------------------HHH
Confidence            9999999999997 6988887765 68999999999999632110                                000


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                      +.+.  ....     +..+++++++++++ ++++++||++|.||+++|..+++.+..
T Consensus       129 ~~~~--~~~~-----v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         129 LKEQ--GQAP-----ITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             Hhhc--cCCC-----CCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence            0000  0111     45567899999998 699999999999999999999998854

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=8.3e-34  Score=220.46  Aligned_cols=166  Identities=31%  Similarity=0.543  Sum_probs=145.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ..+||+++|++|||||||++++..+.+...+.++.+.++ ...+.+++..+.+.+|||+|+++|..++..++++++++|+
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            468999999999999999999999999888888887666 4567788888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |||++++++|+.+..|+..+.... ..++|+++++||+|+.                                       
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~---------------------------------------  123 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD---------------------------------------  123 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc---------------------------------------
Confidence            999999999999999999987764 3589999999999985                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                             ..+.     +...+..++++.++++++++||++|.|++++|.+|++.+....
T Consensus       124 -------~~~~-----i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~  170 (189)
T PTZ00369        124 -------SERQ-----VSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYL  170 (189)
T ss_pred             -------cccc-----cCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence                   2222     4445667788888899999999999999999999999887654

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=8.8e-34  Score=218.65  Aligned_cols=167  Identities=44%  Similarity=0.843  Sum_probs=147.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC----------CeEEEEEEEeCCCcccccccch
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK----------GKKIKLQIWDTAGQERFHTITT   76 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~Dt~G~~~~~~~~~   76 (253)
                      ++.+||+++|++|||||||++++..+.+...+.++++.++....+.+.          +..+.+.+|||||++++..++.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            567999999999999999999999999999999999988876666554          3568899999999999999999


Q ss_pred             hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621          77 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE  155 (253)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (253)
                      .+++++|++|+|||++++++|..+..|+..+.... ..+.|+++|+||+|+.                            
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~----------------------------  133 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE----------------------------  133 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch----------------------------
Confidence            99999999999999999999999999999987764 2578999999999986                            


Q ss_pred             cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                        ..+.     +..++..+++++.+++++++||++|.|++++|+.|.+.+.++
T Consensus       134 ------------------~~~~-----v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         134 ------------------DQRQ-----VSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             ------------------hcCc-----cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence                              2222     455677889999999999999999999999999999888654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=1e-33  Score=216.60  Aligned_cols=165  Identities=30%  Similarity=0.509  Sum_probs=145.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+|+|++|||||||++++..+.+...+.++.+..+. ..+.+++..+.+.+|||+|+++|..++..+++++|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            479999999999999999999999998888899875553 4567788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||++++.+|..+..|...+.+.. ..++|+++|+||+|+.                                        
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~----------------------------------------  120 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE----------------------------------------  120 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh----------------------------------------
Confidence            99999999999999988887653 3679999999999986                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                            ..+.     +..++.+++++.+++++++|||++|.||+++|++|++.+.+++
T Consensus       121 ------~~~~-----v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~  167 (172)
T cd04141         121 ------SQRQ-----VTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRKE  167 (172)
T ss_pred             ------hcCc-----cCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence                  2222     5566788899999999999999999999999999999887643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.1e-33  Score=218.21  Aligned_cols=169  Identities=23%  Similarity=0.515  Sum_probs=145.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|+.|||||||+++|..+.+...+.||++.++....+.+++..+.+.+|||+|++.|..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999999989999999988888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      |++++.+|+.+..|+..+.+......| ++|+||+|+..+...                                     
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~-------------------------------------  122 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPP-------------------------------------  122 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccc-------------------------------------
Confidence            999999999999999999887655677 578999998521000                                     


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                          ....     ...++.+++++.++++++++||++|.|++++|.++.+.+....
T Consensus       123 ----~~~~-----~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~~  169 (182)
T cd04128         123 ----EEQE-----EITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFDLP  169 (182)
T ss_pred             ----hhhh-----hhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence                0000     1235677888888999999999999999999999999887633

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=2.5e-33  Score=221.09  Aligned_cols=170  Identities=47%  Similarity=0.862  Sum_probs=152.7

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      +++.+||+|+|++|||||||+++|....+...+.++++.++....+.+.+..+.+.+|||+|++.+..++..+++.+|++
T Consensus         3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~   82 (210)
T PLN03108          3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            45789999999999999999999999988888889999888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      |+|||++++.+|+.+..|+..+.......+|+++++||+|+.                                      
T Consensus        83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~--------------------------------------  124 (210)
T PLN03108         83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA--------------------------------------  124 (210)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc--------------------------------------
Confidence            999999999999999999999877766789999999999986                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                              ..+.     +...+.+++++.++++++++||+++.|++++|.++++.+.++..
T Consensus       125 --------~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~~  172 (210)
T PLN03108        125 --------HRRA-----VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQ  172 (210)
T ss_pred             --------cccC-----CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence                    2222     55667888999999999999999999999999999999887654

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1.8e-33  Score=214.19  Aligned_cols=163  Identities=56%  Similarity=0.989  Sum_probs=147.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+++|++|||||||++++.++.+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++++|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            58999999999999999999999999888889998888888888888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ||++++++|..+..|+..+......+.|+++++||.|+.                                         
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~-----------------------------------------  120 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-----------------------------------------  120 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc-----------------------------------------
Confidence            999999999999999999988765679999999999986                                         


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                           ....     +..++...+++.++++++++||++|.|++++|..|.+.+.
T Consensus       121 -----~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  164 (166)
T cd01869         121 -----DKRV-----VDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIK  164 (166)
T ss_pred             -----cccC-----CCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence                 2222     4556678888888999999999999999999999998775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=2.2e-33  Score=221.66  Aligned_cols=177  Identities=20%  Similarity=0.486  Sum_probs=145.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+|+|++|||||||+++|..+.|+..+.||++.++. ..+.+++..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            379999999999999999999999999999999987765 5677888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||++++++|+.+. .|...+.... .++|++|||||+|+..+.                            ....    +
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~----------------------------~~~~----~  126 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDL----------------------------ATLR----E  126 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccch----------------------------hhhh----h
Confidence            9999999999994 6887776654 689999999999986210                            0000    0


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCC-HHHHHHHHHHHHHhccC
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANIN-IEKAFIELATAIYDKTS  226 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g-i~~l~~~l~~~~~~~~~  226 (253)
                      +...  ....     +..++++.++++++ ++|+||||+++.| |+++|..+++....+..
T Consensus       127 ~~~~--~~~p-----Is~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         127 LSKQ--RLIP-----VTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGH  180 (222)
T ss_pred             hhhc--cCCc-----cCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccC
Confidence            0000  0111     66778999999999 4999999999984 99999999998776544

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>KOG0083|consensus

Probab=100.00  E-value=1.9e-35  Score=205.39  Aligned_cols=189  Identities=46%  Similarity=0.769  Sum_probs=164.6

Q ss_pred             EEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeC
Q psy9621          13 LLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDI   91 (253)
Q Consensus        13 ~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   91 (253)
                      .++|++++|||+|+-||..+.|- ..+.+|+|++|.++.+...+..+++++|||.|+++|++....|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            37899999999999999988874 56789999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhh
Q psy9621          92 TNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH  171 (253)
Q Consensus        92 ~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (253)
                      .+..||++++.|+.+|..+....+.+.++|||+|++                                            
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a--------------------------------------------  116 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA--------------------------------------------  116 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc--------------------------------------------
Confidence            999999999999999999998899999999999997                                            


Q ss_pred             cCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeecCCCCCCCCCCC
Q psy9621         172 ANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDRGGMAGG  251 (253)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (253)
                        ..+.     +..++++.+++.+++|++++||++|.|+|.+|..|.+.+.... ...|++..-+.++.-+...++.-+-
T Consensus       117 --~er~-----v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~-~~~~~~~~~~~~~~v~~~~k~eia~  188 (192)
T KOG0083|consen  117 --HERA-----VKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLK-MGAPPEGEFADHDSVADEGKGEIAR  188 (192)
T ss_pred             --hhhc-----cccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhc-cCCCCCCccccchhHHhcCCCcccc
Confidence              3333     7788999999999999999999999999999999999887644 3444444444454444455555677


Q ss_pred             CC
Q psy9621         252 CC  253 (253)
Q Consensus       252 c~  253 (253)
                      ||
T Consensus       189 cc  190 (192)
T KOG0083|consen  189 CC  190 (192)
T ss_pred             cc
Confidence            88

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=1.7e-33  Score=218.42  Aligned_cols=170  Identities=28%  Similarity=0.533  Sum_probs=143.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      +||+|+|++|||||||+++|..+.+...+.++.+.++.. .+... +..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999999988888888777654 34444 6778999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||++++.+|+.+. .|+..+.... .++|+++++||.|+.....                                    
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~------------------------------------  122 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKN------------------------------------  122 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCcc------------------------------------
Confidence            9999999999996 5888876654 6899999999999862110                                    


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKTSGR  228 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  228 (253)
                            ....     +...+.+++++.++. +++++||++|.|++++|..+.+.+.......
T Consensus       123 ------~~~~-----v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~  173 (187)
T cd04132         123 ------LDRK-----VTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEGKA  173 (187)
T ss_pred             ------ccCC-----cCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhhhh
Confidence                  0111     556678889999987 9999999999999999999999998766443

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=3.1e-33  Score=213.28  Aligned_cols=167  Identities=48%  Similarity=0.893  Sum_probs=149.8

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      +++.+||+|+|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++
T Consensus         1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   80 (168)
T cd01866           1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   80 (168)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence            46789999999999999999999999998888888988888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      ++|||++++.++..+..|+..+..+..+++|+++++||.|+.                                      
T Consensus        81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~--------------------------------------  122 (168)
T cd01866          81 LLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE--------------------------------------  122 (168)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc--------------------------------------
Confidence            999999999999999999999988766789999999999986                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                              ....     +..++.+.+++..+++++++||+++.|++++|..+.+.+.+
T Consensus       123 --------~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         123 --------SRRE-----VSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             --------cccC-----CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence                    2222     45566778888889999999999999999999999988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=3e-33  Score=221.71  Aligned_cols=167  Identities=29%  Similarity=0.497  Sum_probs=146.9

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      +....+||+++|++|||||||++++..+.+...+.++++.++....+..++..+.+.+|||+|++.|..++..+++++++
T Consensus         9 ~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   88 (219)
T PLN03071          9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (219)
T ss_pred             cCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccE
Confidence            34778999999999999999999999999999999999998887777777788999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      +|+|||++++.+|+.+..|+..+.... .++|+++||||+|+..                                    
T Consensus        89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~------------------------------------  131 (219)
T PLN03071         89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN------------------------------------  131 (219)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh------------------------------------
Confidence            999999999999999999999998775 6899999999999851                                    


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                 ..     +..... ++++..+++++++||++|.|++++|.+|.+.+.+..
T Consensus       132 -----------~~-----v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~~  175 (219)
T PLN03071        132 -----------RQ-----VKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  175 (219)
T ss_pred             -----------cc-----CCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcCc
Confidence                       11     222223 667777899999999999999999999999987654

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=2.7e-33  Score=212.26  Aligned_cols=161  Identities=39%  Similarity=0.750  Sum_probs=150.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD   90 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   90 (253)
                      ||+|+|++|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++.|..++..+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999999999999999998999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhh
Q psy9621          91 ITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE  170 (253)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      +++++||+.+..|+..+......+.|++++|||.|+.                                           
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~-------------------------------------------  117 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS-------------------------------------------  117 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG-------------------------------------------
T ss_pred             ccccccccccccccccccccccccccceeeecccccc-------------------------------------------
Confidence            9999999999999999999986679999999999987                                           


Q ss_pred             hcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         171 HANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                         ..+.     +..+++++++++++++++++||+++.||.++|..+++.+.
T Consensus       118 ---~~~~-----v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  118 ---DERE-----VSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             ---GGSS-----SCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred             ---cccc-----chhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence               2233     6777899999999999999999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=3.5e-33  Score=214.19  Aligned_cols=172  Identities=24%  Similarity=0.502  Sum_probs=142.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      ++||+++|++|||||||+++|..+.|...+.|+++.++. ..+.+.+..+.+.+|||+|+++|..++..+++++|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            479999999999999999999999998888999986664 4566778889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||++++++|+.+. .|+..+.... .++|+++++||+|+.....                                ..+.
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~--------------------------------~~~~  126 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPS--------------------------------TIEK  126 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChh--------------------------------hHHH
Confidence            9999999999997 6998887765 5799999999999862110                                0111


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                      +...  ..+.     +..+++++++++.+ +.++++||++|.|++++|+.+++..
T Consensus       127 l~~~--~~~~-----v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         127 LAKN--KQKP-----ITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             hhhc--cCCC-----cCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence            1100  1122     66678889999887 7999999999999999999998753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=4.5e-33  Score=211.93  Aligned_cols=162  Identities=27%  Similarity=0.653  Sum_probs=145.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+|+|++|||||||++++.++.+...+.++++.++....+.+++..+.+++|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            59999999999999999999999999999999999988888888888999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcc-----cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          90 DITNEKSFDNILKWLRNIDEHAN-----EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      |++++.+++.+..|+..+.+...     .++|+++++||+|+.                                     
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-------------------------------------  123 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT-------------------------------------  123 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc-------------------------------------
Confidence            99999999999999999988753     479999999999985                                     


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                               ....     ....+.+.+++..+++++++||++|.|++++|+.|.+.+.
T Consensus       124 ---------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         124 ---------KHRA-----VSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             ---------cccc-----cCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence                     2222     4455667788888899999999999999999999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=6.4e-33  Score=210.83  Aligned_cols=164  Identities=46%  Similarity=0.845  Sum_probs=146.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ++.+||+++|++|||||||++++.++.+...+.|+.+.++....+...+..+.+.+||+||++.+..++..+++.++++|
T Consensus         1 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   80 (165)
T cd01868           1 DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   80 (165)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence            35689999999999999999999999998888899998888888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      +|||++++.++..+..|+..+......++|+++|+||.|+.                                       
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~---------------------------------------  121 (165)
T cd01868          81 LVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR---------------------------------------  121 (165)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc---------------------------------------
Confidence            99999999999999999999988876679999999999986                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                             ..+.     +..++...++...+++++++||++|.|++++|+.|...+
T Consensus       122 -------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         122 -------HLRA-----VPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             -------cccc-----CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence                   2222     445567788888889999999999999999999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>KOG0081|consensus

Probab=100.00  E-value=5.7e-35  Score=208.87  Aligned_cols=175  Identities=43%  Similarity=0.803  Sum_probs=158.5

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC---------CeEEEEEEEeCCCcccc
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK---------GKKIKLQIWDTAGQERF   71 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~   71 (253)
                      |..-.+++.||.+.+|++||||||++.++..++|...+.+|+|+++..+.+.++         +..+.+++|||+|+++|
T Consensus         1 m~~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERF   80 (219)
T KOG0081|consen    1 MGDGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERF   80 (219)
T ss_pred             CCCccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHH
Confidence            556678999999999999999999999999999999999999999998887663         23578999999999999


Q ss_pred             cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEE
Q psy9621          72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVY  150 (253)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  150 (253)
                      +.+...|++.+-+++++||+++..||-+++.|+.++.-|.- .+.-++++|||.|+.                       
T Consensus        81 RSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~-----------------------  137 (219)
T KOG0081|consen   81 RSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLE-----------------------  137 (219)
T ss_pred             HHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchh-----------------------
Confidence            99999999999999999999999999999999999877642 667899999999998                       


Q ss_pred             eccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         151 DITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                             ..+.     +..+++.+++.++|+|||++||-+|.||+++.+.|...++++++
T Consensus       138 -----------------------~~R~-----Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie  185 (219)
T KOG0081|consen  138 -----------------------DQRV-----VSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIE  185 (219)
T ss_pred             -----------------------hhhh-----hhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHH
Confidence                                   4455     88889999999999999999999999999999999888877664

>KOG0097|consensus

Probab=100.00  E-value=3.3e-33  Score=196.33  Aligned_cols=195  Identities=37%  Similarity=0.745  Sum_probs=172.2

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      .+.+.+|-+++|+-|+|||+|++.|...+|...-.-++|+++....+.+.+..+++++|||.|+++|+...+.|++++.+
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            45678999999999999999999999999998888899999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      +++|||++.+.++..+..|+...+....++..+++++||.|+.                                     
T Consensus        87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle-------------------------------------  129 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE-------------------------------------  129 (215)
T ss_pred             eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhh-------------------------------------
Confidence            9999999999999999999999988888899999999999998                                     


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCC------------CCC
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD------------PLE  232 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~------------~~~  232 (253)
                               ..+.     +..++..+|+++.|+.++++||++|.|++++|-+..+.+.++.+...            .+.
T Consensus       130 ---------~qrd-----v~yeeak~faeengl~fle~saktg~nvedafle~akkiyqniqdgsldlnaaesgvq~k~~  195 (215)
T KOG0097|consen  130 ---------SQRD-----VTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQNIQDGSLDLNAAESGVQHKPS  195 (215)
T ss_pred             ---------hccc-----CcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHhhhcCcccccchhccCcCCCC
Confidence                     4455     78889999999999999999999999999999999999988766332            233


Q ss_pred             CCCeEeecCCCCCCCCCCCC
Q psy9621         233 APDRVTIDKKPDRGGMAGGC  252 (253)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~c  252 (253)
                      .|.+-....+++.+  |-+|
T Consensus       196 ~p~~~~l~se~~~~--kd~c  213 (215)
T KOG0097|consen  196 QPSRTSLSSEATGA--KDQC  213 (215)
T ss_pred             CCCccccccCCCCc--cccC
Confidence            34555555556666  4445

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=1.2e-32  Score=213.90  Aligned_cols=173  Identities=28%  Similarity=0.488  Sum_probs=141.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      .||+|+|++|||||||+++|..+.+...+.|+++.++. ..+.+++..+.+.+|||+|++.|..++..++++++++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            38999999999999999999999998888899876654 45566777889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          90 DITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      |++++++|+.+. .|+..+.... .++|+++|+||+|+..++..+.                                .+
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~--------------------------------~~  126 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERD--------------------------------DL  126 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHH--------------------------------HH
Confidence            999999999986 6999988765 5899999999999963321100                                00


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                      ...  ....     +...++.++++..+ +++++|||++|.|++++|.+|.+.+..
T Consensus       127 ~~~--~~~~-----v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         127 QRY--GKHT-----ISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALN  175 (189)
T ss_pred             hhc--cCCC-----CCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence            000  1111     44556778888877 799999999999999999999998873

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=8.6e-33  Score=210.22  Aligned_cols=163  Identities=46%  Similarity=0.818  Sum_probs=144.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ++.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus         1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l   80 (165)
T cd01864           1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI   80 (165)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999999999988888889888888788888888889999999999999998999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      +|||++++.+++.+..|+..+..+...++|+++|+||+|+.                                       
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~---------------------------------------  121 (165)
T cd01864          81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE---------------------------------------  121 (165)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc---------------------------------------
Confidence            99999999999999999999988766789999999999986                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHH
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                             ..+.     .......++++..+. .++++||++|.|++++|..|.+.
T Consensus       122 -------~~~~-----~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         122 -------EQRE-----VLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             -------cccc-----cCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence                   2222     445567788888875 78999999999999999999875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.7e-32  Score=207.68  Aligned_cols=160  Identities=30%  Similarity=0.599  Sum_probs=141.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999998888888999998888777777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      |++++.+++.+..|+..+.... .++|+++|+||+|+..                                         
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~piiiv~nK~Dl~~-----------------------------------------  118 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVC-GNIPIVLCGNKVDIKD-----------------------------------------  118 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhccc-----------------------------------------
Confidence            9999999999999999998876 4899999999999851                                         


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                           ..      . .....++++..+++++++||++|.|++++|++|.+.+..
T Consensus       119 -----~~------~-~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         119 -----RK------V-KAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             -----cc------C-CHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence                 11      1 123445667777899999999999999999999998864

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=1.6e-32  Score=208.07  Aligned_cols=160  Identities=33%  Similarity=0.615  Sum_probs=138.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||||+++|..++..++++++++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988888888876 444566777888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      |++++.+++.+..|+..+..... .++|+++++||+|+.                                         
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----------------------------------------  119 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE-----------------------------------------  119 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-----------------------------------------
Confidence            99999999999999999877643 579999999999986                                         


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                           ..+.     +...+...+++.++++++++||++|.|++++|++|.+.+
T Consensus       120 -----~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         120 -----DERV-----VSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             -----ccce-----ecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence                 2222     444556777888889999999999999999999998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=2.4e-32  Score=208.70  Aligned_cols=164  Identities=33%  Similarity=0.660  Sum_probs=143.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD   90 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   90 (253)
                      ||+++|++|||||||+++|..+.+...+.|+.+.++....+.+++..+.+++|||||+++|..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999999999999988887788888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          91 ITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ++++.++..+..|+..+.+.. ....|+++|+||+|+..                                         
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~-----------------------------------------  120 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS-----------------------------------------  120 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCc-----------------------------------------
Confidence            999999999999999986653 34578999999999852                                         


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                           ...   ......+..+++++++.+++++||++|.|++++|+.|.+.+.+
T Consensus       121 -----~~~---~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         121 -----PAQ---YALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             -----ccc---ccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence                 111   0023445677888888999999999999999999999998864

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=1.7e-32  Score=207.72  Aligned_cols=160  Identities=44%  Similarity=0.797  Sum_probs=144.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+|+|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.|..++..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            59999999999999999999999998888889888888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      |++++.++..+..|+..+......++|+++++||.|+.                                          
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~------------------------------------------  118 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA------------------------------------------  118 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc------------------------------------------
Confidence            99999999999999999887777889999999999986                                          


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                          ..+.     +...+...+++..+++++++||+++.|++++|+++.+.
T Consensus       119 ----~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113         119 ----DQRE-----VTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ----hhcc-----CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence                2222     55567788888889999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=2.5e-32  Score=207.41  Aligned_cols=162  Identities=33%  Similarity=0.617  Sum_probs=140.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+++|++|||||||++++..+.+...+.++.+..+. ..+.+++..+.+.+|||||++.|..++..+++++|++|+|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            369999999999999999999998888888888875553 5677788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||++++.+|+.+..|+..+.... ..++|+++++||+|+.                                        
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----------------------------------------  119 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE----------------------------------------  119 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch----------------------------------------
Confidence            99999999999999999987754 3679999999999986                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                            ....     +......++++.++++++++||++|.|++++|.++.+.+.
T Consensus       120 ------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~  163 (164)
T cd04175         120 ------DERV-----VGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN  163 (164)
T ss_pred             ------hccE-----EcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence                  2222     3444567788888999999999999999999999987654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=2.3e-32  Score=207.11  Aligned_cols=159  Identities=31%  Similarity=0.633  Sum_probs=141.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC--CeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK--GKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      +||+++|++|+|||||++++..+.+...+.++.+.++....+.+.  +..+.+++|||||+++|..++..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999999988889999988877777776  778899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      |||+++++++..+..|++.+.... .++|+++++||+|+.                                        
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~----------------------------------------  119 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLL----------------------------------------  119 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcc----------------------------------------
Confidence            999999999999999999987655 689999999999986                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                            ....     +..++..++++.++++++++||++|.|++++|++|...
T Consensus       120 ------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         120 ------DQAV-----ITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             ------cccC-----CCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence                  2222     45567788899999999999999999999999998753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=5.8e-32  Score=204.83  Aligned_cols=160  Identities=29%  Similarity=0.511  Sum_probs=139.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|||||||++++..+.+.+.+.++.+.++......+++..+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999998887888777777667777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      |++++.++..+..|+..+.+.. .++|+++++||+|+.                                          
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~------------------------------------------  117 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLD------------------------------------------  117 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCc------------------------------------------
Confidence            9999999999999999997654 579999999999974                                          


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                          ..       . ..+..++++.++++++++||++|.|++++|+.+.+.+.+.
T Consensus       118 ----~~-------~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         118 ----PS-------V-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             ----hh-------H-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence                11       1 1234466777789999999999999999999999887764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.2e-31  Score=211.92  Aligned_cols=171  Identities=47%  Similarity=0.816  Sum_probs=145.0

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      .+....+||+|+|++|||||||+++|..+.+. .+.++.+.++....+.+++..+.+.+|||||++.|..++..+++.+|
T Consensus         9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   87 (211)
T PLN03118          9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ   87 (211)
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            45567889999999999999999999988764 55788888887777888888889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHH-HHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621          84 GIMLVYDITNEKSFDNILK-WLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI  161 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      ++|+|||++++++|+.+.. |...+..+. ..++|+++|+||+|+.                                  
T Consensus        88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~----------------------------------  133 (211)
T PLN03118         88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE----------------------------------  133 (211)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----------------------------------
Confidence            9999999999999999975 666665443 2568999999999986                                  


Q ss_pred             HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                  ..+.     +..++...+++.++++++++||+++.|++++|+.|...+.....
T Consensus       134 ------------~~~~-----i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~~~  181 (211)
T PLN03118        134 ------------SERD-----VSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPS  181 (211)
T ss_pred             ------------ccCc-----cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence                        2222     44456677888888999999999999999999999999977654

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=4.1e-32  Score=208.11  Aligned_cols=170  Identities=27%  Similarity=0.524  Sum_probs=140.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+|+|++|||||||+.++..+.+...+.|+.+. .....+.+++..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            79999999999999999999999998888898864 33445667888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          90 DITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      |++++++|..+. .|+..+.... .++|+++|+||+|+...+.                                ..+.+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~--------------------------------~~~~~  127 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKD--------------------------------TIEKL  127 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChh--------------------------------hHHHH
Confidence            999999999996 6988887665 5899999999999852110                                00000


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHH
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                      ...  ..+.     +...++.+++++++ +++++|||++|.|++++|+.+.+.
T Consensus       128 ~~~--~~~~-----v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         128 KEK--KLTP-----ITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             hhc--cCCC-----CCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence            000  1122     67788899999998 599999999999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=5.3e-32  Score=205.36  Aligned_cols=161  Identities=30%  Similarity=0.558  Sum_probs=139.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+++|.+|||||||++++..+.+...+.++.+ ++....+.+++..+.+++|||+|++.|..++..+++++|++|+|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            47999999999999999999999999888888875 45556777788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||++++.+|..+..|+..+.+... .++|+++++||+|+.                                        
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~----------------------------------------  119 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE----------------------------------------  119 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch----------------------------------------
Confidence            999999999999999999877642 689999999999986                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                            ....     +...+...+++.++++++++||++|.|++++|.++.+.+
T Consensus       120 ------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         120 ------SERE-----VSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             ------hcCc-----cCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence                  2121     344456777888889999999999999999999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=6.4e-32  Score=206.37  Aligned_cols=163  Identities=36%  Similarity=0.668  Sum_probs=144.0

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      .+..+||+++|++|||||||+++|.++.+.+.+.++.+.++....+.+++..+.+.+||+||++++..++..+++++|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            34679999999999999999999999999888888988888777888888999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcc----cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI  161 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      |+|||++++++++.+..|+..+.....    .++|+++++||+|+.                                  
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----------------------------------  127 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP----------------------------------  127 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc----------------------------------
Confidence            999999999999999999998876542    568999999999984                                  


Q ss_pred             HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHH
Q psy9621         162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                   .+.     +..++.+++++.++ .+++++||++|.|++++|+.+++.
T Consensus       128 -------------~~~-----~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         128 -------------ERQ-----VSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             -------------ccc-----cCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence                         111     44566788888888 589999999999999999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=9.5e-32  Score=209.61  Aligned_cols=156  Identities=26%  Similarity=0.553  Sum_probs=139.1

Q ss_pred             EcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCCh
Q psy9621          15 IGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNE   94 (253)
Q Consensus        15 vG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~   94 (253)
                      +|++|||||||+++|..+.+...+.+|+|.++....+.++++.+.+.+|||+|++.|..++..++++++++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999999888899999999888888888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCC
Q psy9621          95 KSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE  174 (253)
Q Consensus        95 ~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (253)
                      .+|+.+..|+..+.+.. .++|+++||||+|+.                                              .
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~----------------------------------------------~  113 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVK----------------------------------------------D  113 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccc----------------------------------------------c
Confidence            99999999999998876 689999999999985                                              1


Q ss_pred             CchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         175 DPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                       +.     +.. ....+++..++++++|||++|.||+++|.+|++.+...
T Consensus       114 -~~-----v~~-~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176      114 -RK-----VKA-KSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             -cc-----CCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence             11     112 22356777889999999999999999999999988764

Ran is involved in the active transport of proteins through nuclear pores.

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=1.1e-31  Score=203.58  Aligned_cols=163  Identities=55%  Similarity=0.934  Sum_probs=145.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            59999999999999999999999888888889888888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      |++++.+++.+..|++.+..+...++|+++++||+|+.                                          
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~------------------------------------------  118 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE------------------------------------------  118 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc------------------------------------------
Confidence            99999999999999999988876789999999999986                                          


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                          ....     ...+..+++++..+++++++||++|.|++++|+.|.+.+.+
T Consensus       119 ----~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      119 ----DQRQ-----VSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK  163 (164)
T ss_pred             ----cccC-----CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence                2222     34456777888889999999999999999999999988754

Rab GTPases are implicated in vesicle trafficking.

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=1.2e-31  Score=203.95  Aligned_cols=159  Identities=29%  Similarity=0.501  Sum_probs=136.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|||||||++++.++.+...+.++.+..+ ...+..+...+.+.+|||+|++.|..++..+++.++++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999999888888877555 344556677889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcc---cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          90 DITNEKSFDNILKWLRNIDEHAN---EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |++++.+++.+..|+..+.....   .++|+++|+||+|+.                                       
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~---------------------------------------  121 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES---------------------------------------  121 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc---------------------------------------
Confidence            99999999999999888776542   579999999999986                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                             ..++     +...+...++..++++++++||++|.|++++|++|..+
T Consensus       122 -------~~~~-----v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         122 -------HKRE-----VSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             -------ccCe-----ecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence                   2222     44556677888888999999999999999999998753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=2.1e-31  Score=207.89  Aligned_cols=167  Identities=25%  Similarity=0.368  Sum_probs=137.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc--------chhhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI--------TTSYYRG   81 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~~   81 (253)
                      +||+|+|++|||||||+++|..+.+...+.|+.+.+.....+.+++..+.+.+|||||...+...        ....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999999998888888876766566777888899999999997654322        3345789


Q ss_pred             ccEEEEEEeCCChhhHHHHHHHHHHHHHhc---ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          82 AMGIMLVYDITNEKSFDNILKWLRNIDEHA---NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      +|++|+|||++++++|+.+..|++.+....   ..++|+++|+||+|+.                               
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~-------------------------------  129 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ-------------------------------  129 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc-------------------------------
Confidence            999999999999999999999999988764   3679999999999996                               


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH-HhCCceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR-EYGVRFMETSAKANINIEKAFIELATAIYDKTSG  227 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  227 (253)
                                     ..+.     +..++.+.+++ .+++++++|||++|.|++++|+.+++.+..+-.+
T Consensus       130 ---------------~~~~-----~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         130 ---------------RHRF-----APRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTRGRS  179 (198)
T ss_pred             ---------------cccc-----ccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence                           2111     33344555554 5679999999999999999999999988865544

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=2.3e-31  Score=201.35  Aligned_cols=160  Identities=32%  Similarity=0.585  Sum_probs=138.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..++++++++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999998888888887554 45566777788899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||++++.+++.+..|+..+.+... .++|+++++||+|+.                                        
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~----------------------------------------  119 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA----------------------------------------  119 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----------------------------------------
Confidence            999999999999999999887653 589999999999986                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                            . +.     ....+..++++..+++++++||++|.|++++|++|.+.+
T Consensus       120 ------~-~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         120 ------A-RT-----VSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             ------c-ce-----ecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence                  2 11     344566778888899999999999999999999998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=2.1e-31  Score=202.20  Aligned_cols=161  Identities=34%  Similarity=0.626  Sum_probs=138.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999999888888788776333 456667778889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      |++++++++.+..|+..+.+.. ..+.|+++++||+|+.                                         
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~-----------------------------------------  118 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE-----------------------------------------  118 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-----------------------------------------
Confidence            9999999999999998887654 2579999999999986                                         


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                           ..+.     +......++++..+++++++||++|.|++++|++|.+.+.
T Consensus       119 -----~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      119 -----SERV-----VSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             -----ccce-----EcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence                 2222     4445667788888899999999999999999999998765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=3e-31  Score=201.28  Aligned_cols=161  Identities=31%  Similarity=0.587  Sum_probs=138.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+++|++|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+|||||++++..++..+++++|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            58999999999999999999999888877788876444 34566778888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||++++.+++.+..|+..+.+.. ..++|+++++||+|+.                                        
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~----------------------------------------  120 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE----------------------------------------  120 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc----------------------------------------
Confidence            99999999999999999987753 3579999999999986                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                            ....     +......++++.++++++++||++|.|++++|+.|.+.+
T Consensus       121 ------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         121 ------HQRK-----VSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             ------ccce-----ecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence                  2222     344556788888889999999999999999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=1.4e-31  Score=208.14  Aligned_cols=177  Identities=21%  Similarity=0.344  Sum_probs=131.3

Q ss_pred             eeEEEEEcCCCCcHHHHHH-HhhcC-----CCCCcccCccce-eeEEEE--------EeeCCeEEEEEEEeCCCcccccc
Q psy9621           9 LFKLLLIGDSGVGKTCVLF-RFSDD-----AFNTTFISTIGI-DFKIKT--------VDLKGKKIKLQIWDTAGQERFHT   73 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~-~l~~~-----~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~Dt~G~~~~~~   73 (253)
                      .+||+++|++|||||||+. ++.++     .+...+.||++. +.....        +.+++..+.+.+|||+|+++  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            5899999999999999996 55443     345667888862 322222        25678889999999999975  3


Q ss_pred             cchhhhcCccEEEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621          74 ITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI  152 (253)
Q Consensus        74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (253)
                      ++..+++++|++|+|||++++.||+.+. .|+..+.... .++|+++||||+|+......+                   
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~-------------------  139 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDE-------------------  139 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccch-------------------
Confidence            5667899999999999999999999997 6999987765 579999999999986210000                   


Q ss_pred             cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                           ..   .....+.......+.     +..+++++++++++++|++|||++|.||+++|..++++
T Consensus       140 -----~~---~~~~~~~~~~~~~~~-----V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         140 -----VN---RARRPLARPIKNADI-----LPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             -----hh---hcccccccccccCCc-----cCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence                 00   000000000001122     77788999999999999999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=3.4e-31  Score=202.41  Aligned_cols=162  Identities=39%  Similarity=0.752  Sum_probs=143.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc-ccchhhhcCccEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH-TITTSYYRGAMGIML   87 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~~il   87 (253)
                      .+||+++|++|||||||++++..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+. .++..+++++|++|+
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5899999999999999999999999888888999888888888888888999999999999886 577888999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |||++++.++..+..|+..+.... ..++|+++++||+|+.                                       
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~---------------------------------------  122 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR---------------------------------------  122 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch---------------------------------------
Confidence            999999999999999999988764 3679999999999986                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccC---CCCHHHHHHHHHHHH
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKA---NINIEKAFIELATAI  221 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~l~~~l~~~~  221 (253)
                             ..+.     +......++++.++++++++||++   +.|++++|..+++.+
T Consensus       123 -------~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         123 -------EQIQ-----VPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             -------hhcC-----CCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence                   2222     455677888888889999999999   889999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=3.9e-31  Score=200.55  Aligned_cols=162  Identities=39%  Similarity=0.716  Sum_probs=144.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999998887788888888888888888899999999999999998899999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ||+++++++..+..|+..+......++|+++++||+|+.                                         
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-----------------------------------------  119 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE-----------------------------------------  119 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----------------------------------------
Confidence            999999999999999999988776789999999999986                                         


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                           ....     ....+...+++.++++++++||++|.|++++|++|.+.+
T Consensus       120 -----~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         120 -----SKRQ-----VSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             -----ccCc-----CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence                 2222     344566778888889999999999999999999998875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01861 Rab6 Rab6 subfamily

Probab=99.98  E-value=3.8e-31  Score=200.21  Aligned_cols=160  Identities=43%  Similarity=0.738  Sum_probs=142.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|||||||++++++..+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999998888899888888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      |++++.+|+.+..|+..+......+.|+++++||+|+.                                          
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~------------------------------------------  118 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS------------------------------------------  118 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc------------------------------------------
Confidence            99999999999999999877665579999999999985                                          


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                          ....     ....+...+++..+++++++||+++.|++++|++|.+.
T Consensus       119 ----~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         119 ----DKRQ-----VSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ----ccCc-----cCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence                2222     44556777788888999999999999999999999864

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.98  E-value=5.4e-31  Score=198.67  Aligned_cols=155  Identities=20%  Similarity=0.369  Sum_probs=129.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|||||||+.++..+.+.+.+.|+ +..+ ...+.+++..+.+.+|||+|++.     ..+++++|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999998887776655 3344 36678888888999999999964     34678999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      |++++.||+.+..|+..+..+.. .++|++++|||.|+...                                       
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~---------------------------------------  114 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISES---------------------------------------  114 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhc---------------------------------------
Confidence            99999999999999999987753 67999999999998511                                       


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHH
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                           ..++     +...++++++++.+ +++++|||++|.||+++|..+.+.
T Consensus       115 -----~~~~-----v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         115 -----NPRV-----IDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             -----CCcc-----cCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence                 1222     56667788888774 899999999999999999999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.98  E-value=6.6e-31  Score=199.53  Aligned_cols=160  Identities=29%  Similarity=0.586  Sum_probs=137.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcC--CCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDD--AFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      +||+++|++|||||||++++...  .+...+.++.+.++....+.+. +..+.+.+|||||++.+..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999864  6778889999888876666664 56789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      +|||++++.++..+..|+..+.... .++|+++|+||+|+.                                       
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~---------------------------------------  120 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLA---------------------------------------  120 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccc---------------------------------------
Confidence            9999999999999999999988765 679999999999986                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                             ...+     +.....+.++...+++++++||+++.|++++|+.|.+.+
T Consensus       121 -------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         121 -------DKAE-----VTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             -------cccC-----CCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence                   2222     333445566777789999999999999999999998875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.97  E-value=1.5e-30  Score=209.22  Aligned_cols=163  Identities=26%  Similarity=0.414  Sum_probs=137.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+|+|++|||||||+++|..+.+...+.+|++ ++....+.+++..+.+.+|||+|++.|..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999888888886 566667778888899999999999999888888899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHh---------cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEH---------ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~---------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      |++++++|+.+..|++++...         ...++|+++++||+|+.                                 
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~---------------------------------  126 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD---------------------------------  126 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch---------------------------------
Confidence            999999999999999998764         22579999999999986                                 


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH-hCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE-YGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                   ..+.     +..++..+++.. .+++++++||++|.|++++|+.|.+.+...
T Consensus       127 -------------~~~~-----v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~~p  173 (247)
T cd04143         127 -------------FPRE-----VQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLP  173 (247)
T ss_pred             -------------hccc-----cCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhccc
Confidence                         2222     344455555543 357899999999999999999999876443

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01862 Rab7 Rab7 subfamily

Probab=99.97  E-value=1.9e-30  Score=198.40  Aligned_cols=165  Identities=39%  Similarity=0.692  Sum_probs=144.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888788888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcc----cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          90 DITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      |++++.+++.+..|.+.+.....    .++|+++++||+|+.                                      
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~--------------------------------------  122 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE--------------------------------------  122 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc--------------------------------------
Confidence            99999999999999888766653    379999999999986                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                              ....     ...+..+.+++..+ ++++++||++|.|++++|+.+.+.+.++.
T Consensus       123 --------~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  170 (172)
T cd01862         123 --------EKRQ-----VSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQE  170 (172)
T ss_pred             --------cccc-----cCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence                    2121     34455677777787 89999999999999999999999888764

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01892 Miro2 Miro2 subfamily

Probab=99.97  E-value=1.5e-30  Score=198.61  Aligned_cols=164  Identities=21%  Similarity=0.289  Sum_probs=140.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      ...+||+++|++|||||||+++|.++.+. ..+.||.+.++....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            46799999999999999999999999998 88899998888777788888888999999999999998999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      |+|||++++.+++.+..|+..+...  .++|+++|+||+|+.                                      
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~--------------------------------------  121 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLD--------------------------------------  121 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEccccc--------------------------------------
Confidence            9999999999999998988876332  479999999999985                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                              +...     ....+..++++.++. .++++||++|.|++++|+.|.+.+.+
T Consensus       122 --------~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~~  167 (169)
T cd01892         122 --------EQQQ-----RYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQY  167 (169)
T ss_pred             --------cccc-----ccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhhC
Confidence                    2221     222345677888886 57999999999999999999998763

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.97  E-value=1.3e-30  Score=199.77  Aligned_cols=171  Identities=25%  Similarity=0.569  Sum_probs=140.1

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeC
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDI   91 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   91 (253)
                      |+|+|++|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            689999999999999999999998888888765543 4566778888999999999999999999999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhh
Q psy9621          92 TNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE  170 (253)
Q Consensus        92 ~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      +++++|+.+. .|+..+.... .++|+++|+||+|+......                         .+       ++..
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~-------------------------~~-------~~~~  126 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKST-------------------------LR-------ELSK  126 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhh-------------------------hh-------hhhc
Confidence            9999999986 6999987765 68999999999998632110                         00       0000


Q ss_pred             hcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         171 HANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                      .  ....     +...++.++++.++. +++++||++|.|++++|+.+.+.+.+
T Consensus       127 ~--~~~~-----v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~  173 (174)
T smart00174      127 Q--KQEP-----VTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAALN  173 (174)
T ss_pred             c--cCCC-----ccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence            0  1111     556778899999995 99999999999999999999988754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04177 RSR1 RSR1 subgroup

Probab=99.97  E-value=3e-30  Score=196.83  Aligned_cols=163  Identities=29%  Similarity=0.588  Sum_probs=140.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.|..+++.++++++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            36999999999999999999999998888888887544 46677788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||++++++++.+..|...+.+.. ..+.|+++++||.|+.                                        
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~----------------------------------------  119 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE----------------------------------------  119 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc----------------------------------------
Confidence            99999999999999999887653 3689999999999986                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                            ..+.     +..++...+++.++ ++++++||++|.|++++|+++.+.+..
T Consensus       120 ------~~~~-----~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~~  165 (168)
T cd04177         120 ------DDRQ-----VSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQIIC  165 (168)
T ss_pred             ------ccCc-----cCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHhh
Confidence                  2222     34455667777887 899999999999999999999987653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=2.8e-30  Score=195.45  Aligned_cols=159  Identities=49%  Similarity=0.890  Sum_probs=140.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|||||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+..+...+++++|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999888778889888888777777878889999999999999988999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      |++++.+++.+..|++.+..+. ..+.|+++++||+|+..                                        
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~----------------------------------------  120 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN----------------------------------------  120 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc----------------------------------------
Confidence            9999999999999999998775 36899999999999851                                        


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                            . .     ...++..++++..+++++++||++|.|++++++.+.+.
T Consensus       121 ------~-~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         121 ------R-E-----VTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             ------c-c-----cCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence                  1 1     33456778888889999999999999999999998865

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04123 Rab21 Rab21 subfamily

Probab=99.97  E-value=3.2e-30  Score=195.03  Aligned_cols=161  Identities=40%  Similarity=0.720  Sum_probs=140.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|+|||||++++....+...+.++.+.++....+.+.+..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999998887777777766776667777777888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      |++++++++.+..|+..+......++|+++++||+|+.                                          
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~------------------------------------------  118 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE------------------------------------------  118 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc------------------------------------------
Confidence            99999999999999999988776689999999999986                                          


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                          ....     +.....+++++..+++++++|++++.|++++|++|.+.+
T Consensus       119 ----~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         119 ----RQRV-----VSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             ----cccC-----CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence                2222     344556777788889999999999999999999998765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=3.1e-30  Score=197.65  Aligned_cols=169  Identities=27%  Similarity=0.506  Sum_probs=137.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|+|||||++++..+.+...+.++. .+.....+.+++..+.+.+|||||++++..++..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999988988888886 3555556777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          90 DITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      |++++.+|+.+. .|+..+.... .++|+++++||+|+.....                            ....+..  
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~----------------------------~~~~~~~--  128 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVN----------------------------VLIQLAR--  128 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChh----------------------------HHHHHhh--
Confidence            999999999985 6988887653 5799999999999862100                            0000000  


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHH
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                        .  ..+.     +..+++..+++..+. +++++||++|.|++++|+.++.
T Consensus       129 --~--~~~~-----v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         129 --Y--GEKP-----VSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             --c--CCCC-----cCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence              0  1122     556678889999987 9999999999999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=3.3e-30  Score=195.96  Aligned_cols=160  Identities=31%  Similarity=0.496  Sum_probs=134.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc-ccccchhhhcCccEEEEEE
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER-FHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~ilv~   89 (253)
                      ||+|+|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++. +......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            699999999999999999998888777777775444 35567788888999999999985 3455677899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhc--ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHA--NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      |++++.+|+.+..|+..+....  ..++|+++|+||+|+.                                        
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----------------------------------------  119 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL----------------------------------------  119 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH----------------------------------------
Confidence            9999999999999998887764  3579999999999986                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCC-CHHHHHHHHHHHHH
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANI-NIEKAFIELATAIY  222 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~  222 (253)
                            ..+.     +...+..++++..+.+++++||++|. |++++|..|.+.+.
T Consensus       120 ------~~~~-----v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         120 ------HYRQ-----VSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             ------HhCc-----cCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence                  2222     55567788888889999999999995 99999999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=9.9e-30  Score=193.99  Aligned_cols=165  Identities=51%  Similarity=0.865  Sum_probs=142.8

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      +...+||+++|++|||||||++++..+.+.+.+.++.+.++....+.+.+..+.+.+||++|+..+...+..+++.+|++
T Consensus         4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   83 (169)
T cd04114           4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL   83 (169)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            34579999999999999999999998888877788888777777788888888999999999999998889999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      ++|||++++.+++.+..|+..+......++|+++++||+|+.                                      
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~--------------------------------------  125 (169)
T cd04114          84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA--------------------------------------  125 (169)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc--------------------------------------
Confidence            999999999999999999999887776689999999999986                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                              ..+.     +..+..+.+.+....+++++||++|.|++++|+.|.+.+
T Consensus       126 --------~~~~-----i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         126 --------ERRE-----VSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             --------cccc-----cCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence                    2222     333445666666678999999999999999999998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=7.3e-30  Score=202.64  Aligned_cols=164  Identities=22%  Similarity=0.370  Sum_probs=137.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc-CccEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR-GAMGIML   87 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~d~~il   87 (253)
                      +||+++|++|||||||+++|..+.+. ..+.++.+.++...++.+.+....+.+|||+|++.  .....+++ ++|++|+
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999888886 66677776577777788888889999999999982  23445666 9999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |||++++.+|+.+..|+..+.... ..++|+++|+||+|+.                                       
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~---------------------------------------  119 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA---------------------------------------  119 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc---------------------------------------
Confidence            999999999999999999987764 2579999999999986                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                             ....     +..++..+++...+++++++||++|.||+++|+.|.+.+..+..
T Consensus       120 -------~~~~-----v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~  167 (221)
T cd04148         120 -------RSRE-----VSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRD  167 (221)
T ss_pred             -------ccce-----ecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhc
Confidence                   2222     44556678888888999999999999999999999998875443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=1.2e-29  Score=196.69  Aligned_cols=172  Identities=25%  Similarity=0.462  Sum_probs=137.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      .||+|+|++|+|||||++++..+.+...+.++.+..+. ..+.+++..+.+.+||++|++.+......+++.+++++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            59999999999999999999988888777777764544 35566777788999999999988877777889999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          90 DITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      |++++++|+.+. .|+..+.++. .++|+++|+||+|+......                                    
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~------------------------------------  123 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVA------------------------------------  123 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCccc------------------------------------
Confidence            999999999997 6999988765 57999999999998521100                                    


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                           .........+..++...+++..+ .++|+|||++|.|++++|+.+.+.+...
T Consensus       124 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~  175 (187)
T cd04129         124 -----KEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLV  175 (187)
T ss_pred             -----ccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhcc
Confidence                 00000011144566788899998 4899999999999999999999877553

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=1.1e-29  Score=194.71  Aligned_cols=171  Identities=27%  Similarity=0.533  Sum_probs=138.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..++..+++.+|++|+||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999998877778775333 345667777888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          90 DITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      |++++.+|+.+. .|+..+... ..++|+++++||+|+......                                ...+
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~--------------------------------~~~~  126 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKT--------------------------------LARL  126 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhh--------------------------------HHHH
Confidence            999999999986 688888766 478999999999998622100                                0000


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                      ...  ....     +..+++..+++..+. +++++||++|.|++++|+.+++.+
T Consensus       127 ~~~--~~~~-----v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         127 NDM--KEKP-----VTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             hhc--cCCC-----CCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence            000  1112     556678889999985 899999999999999999998875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd00154 Rab Rab family

Probab=99.97  E-value=2e-29  Score=189.57  Aligned_cols=158  Identities=53%  Similarity=0.911  Sum_probs=141.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+...+....+.+||+||+..+......+++++|++|+|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888889998888888888888899999999999999889999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      |++++++++.+..|+..+......+.|+++++||+|+.                                          
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~------------------------------------------  118 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE------------------------------------------  118 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc------------------------------------------
Confidence            99999999999999999988876789999999999985                                          


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHH
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA  218 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  218 (253)
                          ....     ...++..+++..++++++++||+++.|++++|++|.
T Consensus       119 ----~~~~-----~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         119 ----DQRQ-----VSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ----cccc-----ccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence                1122     445667778888889999999999999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>KOG0395|consensus

Probab=99.97  E-value=2.2e-29  Score=194.90  Aligned_cols=167  Identities=34%  Similarity=0.541  Sum_probs=151.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ..+||+++|.+|||||+|+.+|....|...|.||++ +.+.+.+.+++....+.|+||+|+++|..+...++++.+++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            368999999999999999999999999999999998 5556778888999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      ||+++++.||+.+..+++.|.+.. ...+|+++||||+|+.                                       
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~---------------------------------------  121 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLE---------------------------------------  121 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccch---------------------------------------
Confidence            999999999999999999995543 3568999999999997                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                             ..+.     +..++++.++..++++++|+||+.+.+++++|..|.+.+.....
T Consensus       122 -------~~R~-----V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~~  169 (196)
T KOG0395|consen  122 -------RERQ-----VSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRLPRE  169 (196)
T ss_pred             -------hccc-----cCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhhc
Confidence                   3344     88889999999999999999999999999999999999887443

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=8.4e-29  Score=196.18  Aligned_cols=171  Identities=30%  Similarity=0.533  Sum_probs=149.2

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR   80 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (253)
                      |.+.+....+||+++|++|||||||++++..+.+...+.++++.++....+..+++.+.+.+|||+|++.+..++..+++
T Consensus         1 ~~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~   80 (215)
T PTZ00132          1 MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYI   80 (215)
T ss_pred             CccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhc
Confidence            66778888999999999999999999999988898889999999888888878888999999999999999999999999


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      +++++|+|||++++.+|..+..|+..+.... .++|+++++||+|+.                                 
T Consensus        81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~---------------------------------  126 (215)
T PTZ00132         81 KGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVK---------------------------------  126 (215)
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCc---------------------------------
Confidence            9999999999999999999999999988765 679999999999985                                 


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                   + ..     .. ....++++..++.++++||++|.|++++|.+|.+.+....
T Consensus       127 -------------~-~~-----~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p  171 (215)
T PTZ00132        127 -------------D-RQ-----VK-ARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDP  171 (215)
T ss_pred             -------------c-cc-----CC-HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhcc
Confidence                         1 11     11 1223566777889999999999999999999999887643

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=7e-29  Score=190.40  Aligned_cols=171  Identities=29%  Similarity=0.564  Sum_probs=137.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      .||+|+|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||+|++.|...+..++.++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            58999999999999999999999998888888875553 45667778889999999999999988888899999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          90 DITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      |++++++|+.+. .|+..+.+.. .++|+++++||+|+..+...                                ...+
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~--------------------------------~~~i  127 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHT--------------------------------RREL  127 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhh--------------------------------hhhh
Confidence            999999999986 5888877654 57999999999998622110                                0000


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                      ...  ....     +...+++++++..+ .++++|||++|.|++++|+.|.+.+
T Consensus       128 ~~~--~~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         128 AKM--KQEP-----VKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             hhc--cCCC-----ccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence            000  1111     44567788888887 4899999999999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=1.1e-28  Score=186.99  Aligned_cols=162  Identities=33%  Similarity=0.588  Sum_probs=138.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|||||||++++....+...+.++.+..+ .....+++..+.+.+|||||+..+...+..+++.++++++||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999999888877777776444 455667778899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      |++++.++..+..|+..+..... .++|+++++||+|+.                                         
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~-----------------------------------------  118 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE-----------------------------------------  118 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc-----------------------------------------
Confidence            99999999999999999887643 579999999999986                                         


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                           ..+.     ........+++.++++++++||++|.|++++|+.+...+.+
T Consensus       119 -----~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  163 (164)
T cd04139         119 -----DKRQ-----VSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIRQ  163 (164)
T ss_pred             -----cccc-----cCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence                 2111     33345567777888999999999999999999999987753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0393|consensus

Probab=99.97  E-value=1.5e-29  Score=191.66  Aligned_cols=179  Identities=27%  Similarity=0.525  Sum_probs=152.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      ...+|++|||+.++|||+|+..+..+.|+..|.||+. +-+...+.+. ++.+.+.+|||+|+++|..++...++++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3568999999999999999999999999999999997 4444667784 9999999999999999999998899999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          86 MLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      +++|+++++.||+++. +|+.++..++ ++.|+++||+|.|+....                                ..
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~--------------------------------~~  127 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDP--------------------------------ST  127 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCH--------------------------------HH
Confidence            9999999999999976 8999999998 899999999999996211                                01


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                      .+++...  ....     +..++++.+++++| +.|+|+||++..|++++|+..++......+
T Consensus       128 ~~~l~~~--~~~~-----Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  128 LEKLQRQ--GLEP-----VTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             HHHHHhc--cCCc-----ccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence            1111111  1122     77889999999999 799999999999999999999999887553

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=8.9e-29  Score=190.68  Aligned_cols=157  Identities=21%  Similarity=0.388  Sum_probs=125.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+++|++|||||||++++..+.+. .+.||++.++.  .+.  ...+.+++||+||++.+..++..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34689999999999999999999987775 45788886653  233  34578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHh-cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEH-ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||+++++++..+..++..+... ...++|++|++||+|+...                                    
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~------------------------------------  133 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------------------------------  133 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC------------------------------------
Confidence            999999999999988877776543 2257999999999998521                                    


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhC--------CceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYG--------VRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                       .   ...++.+.++        +.++++||++|+||+++|++|...+..+
T Consensus       134 -----------------~---~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        134 -----------------M---NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             -----------------C---CHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence                             1   1223333333        2456899999999999999999888764

>cd00876 Ras Ras family

Probab=99.96  E-value=1.4e-28  Score=185.59  Aligned_cols=158  Identities=37%  Similarity=0.617  Sum_probs=137.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD   90 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   90 (253)
                      ||+|+|++|||||||++++++..+...+.++.+ +.........+..+.+.+||+||+..+..++..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            699999999999999999998888888888876 5555666677777899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          91 ITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      +++++++..+..|...+..... .+.|+++++||+|+.                                          
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~------------------------------------------  117 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE------------------------------------------  117 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc------------------------------------------
Confidence            9999999999999999888764 589999999999986                                          


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                          ....     ...+.+.++++.++.+++++|++++.|++++|+.|.+.
T Consensus       118 ----~~~~-----~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         118 ----NERQ-----VSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             ----ccce-----ecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence                2122     44567788888888999999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=3e-29  Score=190.47  Aligned_cols=156  Identities=19%  Similarity=0.299  Sum_probs=127.9

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeC
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDI   91 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   91 (253)
                      |+++|++|||||||+++|.++.+...+.||.+.+.    ..+.+..+.+.+||++|++.+..++..+++++|++|+|||+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            79999999999999999999888888889988653    23445568899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhh
Q psy9621          92 TNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH  171 (253)
Q Consensus        92 ~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (253)
                      +++.++..+..|+..+.... .++|+++++||+|+..++..+                                      
T Consensus        78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~--------------------------------------  118 (164)
T cd04162          78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQ--------------------------------------  118 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHH--------------------------------------
Confidence            99999999999988886554 689999999999986321110                                      


Q ss_pred             cCCCchhhhhhccchhHHHHHHHhCCceEEeeccC------CCCHHHHHHHHHH
Q psy9621         172 ANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKA------NINIEKAFIELAT  219 (253)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~gi~~l~~~l~~  219 (253)
                               ..........++++.+++++++||++      ++||+++|+.++.
T Consensus       119 ---------~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         119 ---------EIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             ---------HHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence                     00111234566777788999999999      9999999998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.96  E-value=4.9e-28  Score=186.57  Aligned_cols=165  Identities=31%  Similarity=0.520  Sum_probs=139.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      .||+++|++|||||||++++....+...+.++.+..+ ...+.+.+..+.+.+|||||++++..++..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5999999999999999999999888777777775444 345666777788999999999999988899999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      |+++..+++.+..|+..+.+.. ..+.|+++++||+|+.                                         
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~-----------------------------------------  119 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH-----------------------------------------  119 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh-----------------------------------------
Confidence            9999999999999988887754 3678999999999986                                         


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                           ..+.     +.......+++.++.+++++||+++.|++++|.+|.+.+...+.
T Consensus       120 -----~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~  167 (180)
T cd04137         120 -----TQRQ-----VSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVEN  167 (180)
T ss_pred             -----hcCc-----cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence                 2222     33345567777788999999999999999999999998876553

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04149 Arf6 Arf6 subfamily

Probab=99.96  E-value=6.6e-29  Score=189.28  Aligned_cols=155  Identities=21%  Similarity=0.388  Sum_probs=121.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+++|++|||||||++++..+.+.. +.||.+.++.  .+.  ...+.+++|||+|++.+..++..+++++|++|
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii   81 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   81 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            346899999999999999999998777654 5788886664  222  24678999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.++..+..|+..+.... ..++|+++++||+|+...                                    
T Consensus        82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------------------------------  125 (168)
T cd04149          82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA------------------------------------  125 (168)
T ss_pred             EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC------------------------------------
Confidence            9999999999999988877765432 357999999999998511                                    


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHH-----HHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIA-----REYGVRFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                                       +..++.+++.     +...++++++||++|.|++++|++|.+
T Consensus       126 -----------------~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         126 -----------------MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             -----------------CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence                             1112222222     122357899999999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.96  E-value=2.1e-28  Score=191.45  Aligned_cols=168  Identities=26%  Similarity=0.401  Sum_probs=136.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD   90 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   90 (253)
                      ||+++|++|||||||+++|+.+.+...+.++.+ +.....+.+.+..+.+.+||++|+..|..++..++..+|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            699999999999999999999998887777765 4445567777778899999999999999888999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          91 ITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ++++.+++.+..|+..+..... .++|+++++||+|+...                                        
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~----------------------------------------  119 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE----------------------------------------  119 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc----------------------------------------
Confidence            9999999999999998887654 57999999999998621                                        


Q ss_pred             hhcCCCchhhhhhccchhHHHHH-HHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCC
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIA-REYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD  229 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~  229 (253)
                           ...     +......+.. ...+.+++++||++|.|++++|++|.+.+......++
T Consensus       120 -----~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~  170 (198)
T cd04147         120 -----ERQ-----VPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANLPYNLSP  170 (198)
T ss_pred             -----ccc-----ccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhcccccch
Confidence                 111     2222222222 2456789999999999999999999998875444444

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.96  E-value=1.9e-28  Score=189.31  Aligned_cols=166  Identities=22%  Similarity=0.362  Sum_probs=131.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEee-CCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDL-KGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      .+||+++|++|||||||++++..+.+... .|+.+.+.....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            58999999999999999999998877654 677776665555544 3456889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |||++++.++..+..|+.++.... ..++|+++++||+|+...                                     
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~-------------------------------------  124 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA-------------------------------------  124 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc-------------------------------------
Confidence            999999999999988888877653 357999999999998511                                     


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHH------HHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIA------REYGVRFMETSAKANINIEKAFIELATAIYDKTSGR  228 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  228 (253)
                                      ...+....+.      ...+++++++||++|.|++++|++|.+.+.+.+.+.
T Consensus       125 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~~~  176 (183)
T cd04152         125 ----------------LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRKML  176 (183)
T ss_pred             ----------------CCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHHhhh
Confidence                            1111112221      112357899999999999999999999987665443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=3.1e-28  Score=187.90  Aligned_cols=167  Identities=20%  Similarity=0.350  Sum_probs=126.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+++|++|||||||++++..+.+.. +.||.+.++.  .+..  ..+.+++|||+|++.+..++..+++++|++|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            346899999999999999999998877764 5778876654  3333  4578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHh-cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEH-ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.++..+..++..+... ...++|++|++||.|+......                          ++     
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~--------------------------~~-----  138 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST--------------------------TE-----  138 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH--------------------------HH-----
Confidence            999999999999988777776443 2256899999999998521000                          00     


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                       +........+....+.++++||++|.|++++|++|.+.+.++++
T Consensus       139 -----------------i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~~  182 (182)
T PTZ00133        139 -----------------VTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKSMQ  182 (182)
T ss_pred             -----------------HHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhcC
Confidence                             00000001111223467799999999999999999999888763

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.96  E-value=3e-28  Score=186.92  Aligned_cols=162  Identities=20%  Similarity=0.368  Sum_probs=123.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+++|++|||||||++++..+.+. .+.||++.++..  +..  ..+.+.+|||||++.+..++..+++++|++|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            34689999999999999999999877774 457888876642  332  4578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.+++....|+..+.... ..++|++|++||.|+......                          ++     
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~--------------------------~~-----  134 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA--------------------------AE-----  134 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCH--------------------------HH-----
Confidence            9999999999999998888876532 257999999999998521000                          00     


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                                       +.........+...+.++++||++|.|++++|++|...+
T Consensus       135 -----------------i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      135 -----------------ITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             -----------------HHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence                             000000011112234577899999999999999997764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04158 ARD1 ARD1 subfamily

Probab=99.96  E-value=2.8e-28  Score=186.12  Aligned_cols=157  Identities=21%  Similarity=0.388  Sum_probs=124.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD   90 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   90 (253)
                      ||+++|++|||||||++++....+.. +.||.+.++.  .+..  ..+.+.+|||||++.+..++..+++++|++|+|||
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999886654 6788876664  2332  45789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          91 ITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ++++.++..+..|+..+.... ..+.|+++++||+|+...                                        
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~----------------------------------------  115 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA----------------------------------------  115 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC----------------------------------------
Confidence            999999999999998887543 256899999999998511                                        


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHh------CCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREY------GVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                   +..++.+++++..      .+.++++||++|.||+++|++|.+.+....
T Consensus       116 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~  164 (169)
T cd04158         116 -------------LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAG  164 (169)
T ss_pred             -------------CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhcc
Confidence                         2222233333211      236889999999999999999998776643

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=3.5e-28  Score=183.72  Aligned_cols=113  Identities=23%  Similarity=0.517  Sum_probs=96.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|||||||++++..+.+. .+.|+++.++.  .+..  ..+.+.+|||||++.+..++..+++++|++|+||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999887776 46788886653  2332  4678999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHh-cccccceeEEeeeeccc
Q psy9621          90 DITNEKSFDNILKWLRNIDEH-ANEDVEKMILGKTKDTA  127 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~  127 (253)
                      |++++.++..+..|+..+... ...+.|+++++||+|+.
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  114 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP  114 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence            999999999999888777543 22568999999999985

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00099 rab6; Provisional

Probab=99.96  E-value=1.1e-27  Score=183.45  Aligned_cols=170  Identities=36%  Similarity=0.575  Sum_probs=138.7

Q ss_pred             CCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhc
Q psy9621          32 DAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA  111 (253)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~  111 (253)
                      +.|.+.+.||+|.++....+.+.+..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            45778889999999988888888999999999999999999999999999999999999999999999999999998776


Q ss_pred             ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHH
Q psy9621         112 NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAI  191 (253)
Q Consensus       112 ~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (253)
                      ..++|+++|+||+|+.                                              ..+.     +...++..+
T Consensus        83 ~~~~piilVgNK~DL~----------------------------------------------~~~~-----v~~~e~~~~  111 (176)
T PTZ00099         83 GKDVIIALVGNKTDLG----------------------------------------------DLRK-----VTYEEGMQK  111 (176)
T ss_pred             CCCCeEEEEEECcccc----------------------------------------------cccC-----CCHHHHHHH
Confidence            5689999999999986                                              2222     455567788


Q ss_pred             HHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCC--CCCCeEeecCCCCCCCCCCCC
Q psy9621         192 AREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPL--EAPDRVTIDKKPDRGGMAGGC  252 (253)
Q Consensus       192 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~c  252 (253)
                      ++.++..++++||++|.||+++|++|.+.+.........+  ..++.+.-.+.-+.+.+-++|
T Consensus       112 ~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (176)
T PTZ00099        112 AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNSNSNDANVVDIQLTNNSNANDKNMLSKC  174 (176)
T ss_pred             HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccccCCCCCCccceeccccCCccchhhHhhh
Confidence            8888899999999999999999999999987755433333  112333333444446666666

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=1.9e-27  Score=181.57  Aligned_cols=168  Identities=29%  Similarity=0.563  Sum_probs=133.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|||||||+++|.++.+...+.++.. +.........+..+.+.+||+||++++...+..+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            6999999999999999999999988777777765 334455667788899999999999999888888899999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          90 DITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      |++++.++.... .|+..+.... .+.|+++++||+|+.......                             .|.   
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~-----------------------------~~~---  126 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTL-----------------------------KKL---  126 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhh-----------------------------hhc---
Confidence            999999988876 5777776655 589999999999987332110                             000   


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHH
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                         ......     +..++..+++..++. +++++||++|.|++++|+.|.+
T Consensus       127 ---~~~~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         127 ---EKGKEP-----ITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             ---ccCCCc-----cCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence               000011     445667788888886 9999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=9.4e-28  Score=187.05  Aligned_cols=118  Identities=26%  Similarity=0.503  Sum_probs=107.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-----CeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-----GKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      +||+++|++|||||||+++|..+.+...+.+|++.++....+.++     +..+.+.+|||+|++.|..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999999899999988877766664     467889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhc-------------------ccccceeEEeeeeccc
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHA-------------------NEDVEKMILGKTKDTA  127 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~p~iiv~nK~D~~  127 (253)
                      +|+|||+++++||+.+..|+.++....                   ..++|++|||||.|+.
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~  142 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQI  142 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccch
Confidence            999999999999999999999997642                   2479999999999996

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=6.3e-28  Score=184.84  Aligned_cols=157  Identities=20%  Similarity=0.326  Sum_probs=123.1

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      +.+..+||+++|++|||||||++++.+..+ ..+.++.+...  ..+.+.  .+.+.+|||||++.+..++..+++++|+
T Consensus        10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~   84 (173)
T cd04154          10 LKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA   84 (173)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence            456778999999999999999999997644 45567777443  334444  4779999999999988888999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHh-cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEH-ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +++|||++++.++.....|+..+... ...++|+++++||+|+..+                                  
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------------------------------  130 (173)
T cd04154          85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA----------------------------------  130 (173)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC----------------------------------
Confidence            99999999999999998888887653 2368999999999998621                                  


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHH-----HHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIA-----REYGVRFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                                         ...++..++.     ...+++++++||++|.|++++|+++..
T Consensus       131 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         131 -------------------LSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             -------------------CCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence                               1111222222     123578999999999999999999863

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=2.6e-27  Score=180.24  Aligned_cols=162  Identities=23%  Similarity=0.361  Sum_probs=124.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+++|++|||||||+++|.++.+...+.++.. ++ .....+.+..+.+.+|||||.+++...+..+++.+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            4899999999999999999999988766443321 22 233455667789999999999988877777889999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          90 DITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      |++++.+++.+. .|+..+.... .++|+++|+||+|+...                                       
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~---------------------------------------  118 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDG---------------------------------------  118 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccc---------------------------------------
Confidence            999999999985 6888887665 58999999999998621                                       


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                             ....   ...+....+++.+.  .+++++||++|.|++++|+.+.+.+..
T Consensus       119 -------~~~~---~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~  165 (166)
T cd01893         119 -------SSQA---GLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH  165 (166)
T ss_pred             -------cchh---HHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence                   1100   01122223333332  389999999999999999999887654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=7.4e-27  Score=190.49  Aligned_cols=123  Identities=22%  Similarity=0.459  Sum_probs=110.2

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-------------CeEEEEEEEeCCCcccc
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-------------GKKIKLQIWDTAGQERF   71 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~   71 (253)
                      +....+||+|+|+.|||||||+++|..+.+...+.+|+|.++....+.+.             +..+.++||||+|++.|
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            45567999999999999999999999999988889999988876766654             24688999999999999


Q ss_pred             cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcc------------cccceeEEeeeeccc
Q psy9621          72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN------------EDVEKMILGKTKDTA  127 (253)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~iiv~nK~D~~  127 (253)
                      ..++..++++++++|+|||++++.+|+.+..|++.+..+..            .++|++|||||+|+.
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~  164 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA  164 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence            99999999999999999999999999999999999987642            258999999999996

>cd04157 Arl6 Arl6 subfamily

Probab=99.95  E-value=3.5e-27  Score=178.51  Aligned_cols=113  Identities=18%  Similarity=0.395  Sum_probs=95.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCC-CCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDA-FNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +|+++|++|||||||+++|.+.. +...+.|+.+.....  +.  ...+.+.+|||||++++..++..+++++|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            58999999999999999999875 355677888755432  22  34678999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhc---ccccceeEEeeeeccc
Q psy9621          90 DITNEKSFDNILKWLRNIDEHA---NEDVEKMILGKTKDTA  127 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~  127 (253)
                      |++++.++.....|+..+.+..   ..++|+++++||+|+.
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~  117 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP  117 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence            9999999999888888876542   2579999999999986

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.95  E-value=3.7e-27  Score=180.72  Aligned_cols=159  Identities=21%  Similarity=0.344  Sum_probs=121.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ..+||+++|++|+|||||++++..+.+.. +.++.+.++..  +.+  ..+.+.+||+||++.+...+..+++++|++|+
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            46899999999999999999999887765 47787766542  222  35789999999999999899999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |||+++++++.....++..+.+... .++|+++++||+|+.+..                                    
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~------------------------------------  132 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM------------------------------------  132 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC------------------------------------
Confidence            9999999999888887777765432 579999999999986210                                    


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                              ....    +.........+..+++++++||++|.|++++|++|.+
T Consensus       133 --------~~~~----i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         133 --------TPAE----ISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             --------CHHH----HHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence                    0000    0000011111234568999999999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=4.7e-27  Score=177.59  Aligned_cols=157  Identities=25%  Similarity=0.463  Sum_probs=119.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD   90 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   90 (253)
                      +|+++|++|||||||+++|..+.+... .|+.+.++.  .+... ..+.+.+|||||+..+..++..++..+|++|+|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998887644 677775543  33333 45789999999999998888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          91 ITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ++++.++..+..|+..+.+... .++|+++++||+|+.....                          .++         
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------------------~~~---------  121 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT--------------------------AEE---------  121 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC--------------------------HHH---------
Confidence            9999999999888888765432 5799999999999851100                          000         


Q ss_pred             hhcCCCchhhhhhccch-hHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621         170 EHANEDPQVVNSWVCKH-RGEAIAREYGVRFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                                   +... ....++...+++++++||++|.|++++|++|.+
T Consensus       122 -------------i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         122 -------------ITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             -------------HHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence                         0000 012223334567999999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=6.5e-27  Score=178.16  Aligned_cols=157  Identities=20%  Similarity=0.283  Sum_probs=122.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD   90 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   90 (253)
                      +|+++|++|||||||++++.+. +...+.||++...  ..+..  ..+.+.+||+||++.+..++..+++++|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999976 6677788888653  23333  45779999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          91 ITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ++++.+++.+..|+..+.+... .++|+++++||+|+..++..                                     
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~-------------------------------------  118 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG-------------------------------------  118 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH-------------------------------------
Confidence            9999999999999998876532 57999999999998733211                                     


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHh--CCceEEeeccCC------CCHHHHHHHHHH
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREY--GVRFMETSAKAN------INIEKAFIELAT  219 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~------~gi~~l~~~l~~  219 (253)
                             .   ..........++++.  .+.++++||++|      .|+++.|+||..
T Consensus       119 -------~---~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         119 -------A---DVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             -------H---HHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence                   0   001111233444333  357888999998      899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>KOG4252|consensus

Probab=99.94  E-value=2e-28  Score=178.81  Aligned_cols=172  Identities=30%  Similarity=0.592  Sum_probs=158.5

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR   80 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (253)
                      |-...++.-+|++++|..++||||+++++..+-|...|..++|+++....+.+.+..+.+.+|||+|+++|......|++
T Consensus        12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr   91 (246)
T KOG4252|consen   12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR   91 (246)
T ss_pred             CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence            34455677899999999999999999999999999999999999999888888888888999999999999999999999


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      ++-+.++||+-+++.||+....|++.+.... ..+|.++|-||+|+.                                 
T Consensus        92 gaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlv---------------------------------  137 (246)
T KOG4252|consen   92 GAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLV---------------------------------  137 (246)
T ss_pred             cccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhh---------------------------------
Confidence            9999999999999999999999999998877 789999999999998                                 


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                   ++..     +...+.+.+++.+...++.+|++.+.|+..+|..|+..+.++
T Consensus       138 -------------eds~-----~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~  183 (246)
T KOG4252|consen  138 -------------EDSQ-----MDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQ  183 (246)
T ss_pred             -------------Hhhh-----cchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence                         4455     778889999999999999999999999999999998877654

>cd04151 Arl1 Arl1 subfamily

Probab=99.94  E-value=3.9e-26  Score=172.33  Aligned_cols=156  Identities=23%  Similarity=0.367  Sum_probs=115.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD   90 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   90 (253)
                      ||+++|++|+|||||++++..+.+.. +.|+++.++.  .+.  +....+++|||||++.+..++..++..++++|+|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998777654 4677765553  233  245789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHh-cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          91 ITNEKSFDNILKWLRNIDEH-ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ++++.++.....++..+.+. ...+.|+++++||+|+..+...                                     
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~-------------------------------------  118 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE-------------------------------------  118 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH-------------------------------------
Confidence            99998888777666655432 2257999999999998621000                                     


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                            .+     +.........+..+.+++++||++|.|++++|++|.+
T Consensus       119 ------~~-----i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         119 ------AE-----ISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             ------HH-----HHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence                  00     0000000111122357999999999999999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.94  E-value=5.8e-26  Score=172.79  Aligned_cols=113  Identities=25%  Similarity=0.452  Sum_probs=91.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCC------CCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAF------NTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      ||+|+|++|+|||||++++.....      ...+.++++.++.  .+.+.  ...+.+|||||++.+..++..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            689999999999999999975322      2334566665553  23333  5679999999999999889999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccc
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTA  127 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~  127 (253)
                      +++|+|++++.++.....|+..+.+.. ..++|+++++||+|+.
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~  120 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLP  120 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence            999999999999999888888876643 3579999999999985

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.94  E-value=6.1e-26  Score=173.90  Aligned_cols=165  Identities=25%  Similarity=0.413  Sum_probs=127.5

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      .+...+||+++|+.|||||||++++..+.... +.||.|.+..  .+.+.  ...+.+||.+|+..++..|..++.++++
T Consensus        10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~--~i~~~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~   84 (175)
T PF00025_consen   10 SKKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIE--EIKYK--GYSLTIWDLGGQESFRPLWKSYFQNADG   84 (175)
T ss_dssp             TTTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEE--EEEET--TEEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred             ccCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccc--eeeeC--cEEEEEEeccccccccccceeeccccce
Confidence            45789999999999999999999999765444 6788875554  44444  4679999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|+|+|.++++.+......+..+.... -.++|++|++||.|+.++...                          +++  
T Consensus        85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~--------------------------~~i--  136 (175)
T PF00025_consen   85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSE--------------------------EEI--  136 (175)
T ss_dssp             EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTH--------------------------HHH--
T ss_pred             eEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchh--------------------------hHH--
Confidence            999999999999999988888876653 268999999999998632111                          000  


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                                      ...+.   ...+.....+.++.|||.+|+|+++.+++|.+.+
T Consensus       137 ----------------~~~l~---l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  137 ----------------KEYLG---LEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             ----------------HHHTT---GGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             ----------------Hhhhh---hhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence                            00011   1111123457889999999999999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd00879 Sar1 Sar1 subfamily

Probab=99.94  E-value=6.6e-26  Score=176.21  Aligned_cols=116  Identities=22%  Similarity=0.379  Sum_probs=95.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+++|++|||||||++++.+..+. .+.++.+...  ..+.+.  ...+.+||+||+..+..++..++++++++|
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34689999999999999999999987764 4566665433  234444  367899999999988888888999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccc
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTA  127 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~  127 (253)
                      +|+|++++.++.....|+..+.+.. ..+.|+++++||+|+.
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~  133 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLP  133 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence            9999999999998888888876543 2579999999999986

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.94  E-value=6.9e-26  Score=170.87  Aligned_cols=156  Identities=21%  Similarity=0.399  Sum_probs=119.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD   90 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   90 (253)
                      ||+++|++|||||||++++.+..+ ..+.++.+.+...  +.+  ....+.+||+||+..+...+..+++.+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            699999999999999999998874 4456677655433  333  35779999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          91 ITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      ++++.++.....|+..+.... ..+.|+++++||+|+......                          +          
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--------------------------~----------  119 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSV--------------------------S----------  119 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCH--------------------------H----------
Confidence            999999999988888876643 368999999999998621100                          0          


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                             +     +.............++++++||++|.|++++|+.|..
T Consensus       120 -------~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         120 -------E-----LIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             -------H-----HHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence                   0     1100011111223468999999999999999999864

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG0073|consensus

Probab=99.93  E-value=3.7e-25  Score=159.48  Aligned_cols=169  Identities=20%  Similarity=0.323  Sum_probs=135.6

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      +..+.+++|+++|..|+||||++++|.+.. .....||.|+..  +++.++  .+++++||.+|+...+..|..|+...|
T Consensus        11 k~kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~I--ktl~~~--~~~L~iwDvGGq~~lr~~W~nYfestd   85 (185)
T KOG0073|consen   11 KLKEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQI--KTLEYK--GYTLNIWDVGGQKTLRSYWKNYFESTD   85 (185)
T ss_pred             HhhhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceee--EEEEec--ceEEEEEEcCCcchhHHHHHHhhhccC
Confidence            346779999999999999999999999865 444578887444  455444  577999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      ++|+|+|.+++..++.....++.+..-. -.+.|++|++||.|+.++=+.+.+                           
T Consensus        86 glIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i---------------------------  138 (185)
T KOG0073|consen   86 GLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEI---------------------------  138 (185)
T ss_pred             eEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHH---------------------------
Confidence            9999999999999999887777765532 257899999999999743211000                           


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                          ......+.+++.+.++++-|||.+|+++.+-+++|...++++
T Consensus       139 --------------------~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  139 --------------------SKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             --------------------HHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence                                112335667788889999999999999999999999988774

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.93  E-value=1.1e-24  Score=168.47  Aligned_cols=116  Identities=21%  Similarity=0.326  Sum_probs=94.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      +..+||+++|.+|||||||++++.++.+.. +.|+.+.+.  ..+.+  ..+.+.+||+||++.+..++..+++++|++|
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            456899999999999999999999876643 355554332  22333  3477999999999998889999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccc
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTA  127 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~  127 (253)
                      +|+|++++.++.....++..+.+.. ..++|+++++||+|+.
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~  131 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP  131 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence            9999999999999888888776532 2579999999999985

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01890 LepA LepA subfamily

Probab=99.93  E-value=7.4e-25  Score=168.62  Aligned_cols=154  Identities=19%  Similarity=0.279  Sum_probs=114.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCC-------CCCcccC------ccceeeEEEEEee-----CCeEEEEEEEeCCCccccc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDA-------FNTTFIS------TIGIDFKIKTVDL-----KGKKIKLQIWDTAGQERFH   72 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~   72 (253)
                      ||+++|++|+|||||+++|.+..       +...+.+      +.|+++......+     ++..+.+.+|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            79999999999999999998632       2122222      2244554443333     5567889999999999999


Q ss_pred             ccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621          73 TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI  152 (253)
Q Consensus        73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (253)
                      .++..+++++|++|+|||+++..++.....|....    ..++|+++++||+|+..                        
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~------------------------  133 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPS------------------------  133 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCc------------------------
Confidence            99999999999999999999877766666554332    24789999999999851                        


Q ss_pred             cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                                            ..       ......++++.+++   .++++||++|.|++++|+.|.+.+
T Consensus       134 ----------------------~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         134 ----------------------AD-------PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             ----------------------CC-------HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence                                  11       11123455555565   489999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.93  E-value=2e-24  Score=162.42  Aligned_cols=156  Identities=24%  Similarity=0.399  Sum_probs=120.0

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeC
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDI   91 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   91 (253)
                      |+++|++|||||||++++.+..+...+.|+.+.++..  +..  ..+.+.+||+||+..+..++..+++.+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7999999999999999999999998888988876643  322  337899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhh
Q psy9621          92 TNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE  170 (253)
Q Consensus        92 ~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      +++.++.....|+..+.... ..++|+++++||+|+......                          ..          
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--------------------------~~----------  121 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--------------------------DE----------  121 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--------------------------HH----------
Confidence            99999988887777765432 257899999999998521000                          00          


Q ss_pred             hcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621         171 HANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                                  ..............++++++|+++|.|+++++++|.+
T Consensus       122 ------------~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         122 ------------LIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             ------------HHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence                        0000000011123468899999999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04155 Arl3 Arl3 subfamily

Probab=99.92  E-value=5.2e-24  Score=163.00  Aligned_cols=118  Identities=22%  Similarity=0.376  Sum_probs=94.8

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      +....+||+++|++|||||||++++.+..+.. +.++.|.+..  .+...  ...+.+||++|+..+...+..+++.+++
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~   84 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDC   84 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence            34557999999999999999999999875543 4666665443  33344  3668999999998888888888999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccc
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTA  127 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~  127 (253)
                      +++|+|+++..++.....++..+.... ..++|+++++||+|+.
T Consensus        85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (173)
T cd04155          85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA  128 (173)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence            999999999999988887777665432 3579999999999985

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.92  E-value=1.1e-23  Score=157.93  Aligned_cols=158  Identities=28%  Similarity=0.435  Sum_probs=126.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+++|++|+|||||++++....+...+.++.+.++....+..++..+.+.+||+||+..+..++..+.+.++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999999887777777887777766677776668899999999999988888889999999999


Q ss_pred             EeCCCh-hhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          89 YDITNE-KSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        89 ~d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      +|+... .++.... .|...+......+.|+++++||.|+..                                      
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------------------------------------  122 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRD--------------------------------------  122 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCc--------------------------------------
Confidence            999887 6776665 677777666644899999999999861                                      


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHH
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA  218 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  218 (253)
                              ..      ........+......+++++||++|.|++++|+.|.
T Consensus       123 --------~~------~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       123 --------AK------LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             --------ch------hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence                    11      111222333333347899999999999999998863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.92  E-value=7.1e-24  Score=161.42  Aligned_cols=156  Identities=12%  Similarity=0.114  Sum_probs=106.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc---------chhhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI---------TTSYYR   80 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------~~~~~~   80 (253)
                      .+|+++|++|+|||||+++|.+..+.....+....+..  .-......+.+.+|||||.......         ......
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLF--VGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCccccee--EEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            37999999999999999999987764322111111111  1122234578999999998431110         001112


Q ss_pred             CccEEEEEEeCCChhhH--HHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          81 GAMGIMLVYDITNEKSF--DNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      .+|++|+|+|++++.++  +....|+..+.... .++|+++++||+|+..                              
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~------------------------------  127 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLT------------------------------  127 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCc------------------------------
Confidence            36899999999987653  66667888876554 5799999999999862                              


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                                      ...     +.  ...++.+..+.+++++||++|.|++++|+++.+.+
T Consensus       128 ----------------~~~-----~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         128 ----------------FED-----LS--EIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             ----------------hhh-----HH--HHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence                            111     11  13444555568999999999999999999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01898 Obg Obg subfamily

Probab=99.92  E-value=1e-23  Score=160.85  Aligned_cols=157  Identities=11%  Similarity=0.143  Sum_probs=108.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc----cccccchhhh---cCcc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE----RFHTITTSYY---RGAM   83 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~---~~~d   83 (253)
                      +|+++|.+|||||||+++|.+........+....+.....+.+.+ ...+.+|||||..    .+..+...++   ..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            689999999999999999987543211111111111111222222 2479999999964    2223334443   4699


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          84 GIMLVYDITNE-KSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        84 ~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      ++++|+|++++ +++..+..|.+.+.....  .+.|+++|+||+|+..                                
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~--------------------------------  128 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD--------------------------------  128 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC--------------------------------
Confidence            99999999999 789999999988877642  4789999999999862                                


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH-hCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE-YGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                    ...     . ......+... .+.+++++||+++.|++++|++|.+.
T Consensus       129 --------------~~~-----~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         129 --------------EEE-----L-FELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             --------------chh-----h-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence                          111     1 1223334444 36789999999999999999998864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0070|consensus

Probab=99.91  E-value=3.8e-24  Score=158.28  Aligned_cols=166  Identities=18%  Similarity=0.353  Sum_probs=134.9

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      .....+|+++|.-++||||+++++..+.+... .||+|.+.....+    +++.+.+||.+|++.++.+|..|+++.+++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence            44678999999999999999999998888777 9999966654333    378899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      |+|+|.++++.+......+..+..+.. .+.|+++++||.|+.++-++..                              
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~e------------------------------  138 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAE------------------------------  138 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHH------------------------------
Confidence            999999999999999988888888765 7899999999999985533211                              


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                        +.......-.+.....+..++|.+|+|+.+.++++...+..+
T Consensus       139 ------------------i~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  139 ------------------ITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             ------------------HHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhcc
Confidence                              111111111112446778999999999999999999987654

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.91  E-value=2.3e-23  Score=165.51  Aligned_cols=178  Identities=35%  Similarity=0.532  Sum_probs=137.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+++|++|||||||+++|..+.+...+.++++..+.........+.+.+.+|||+|+++|..++..+++++++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999999999988888777776666688999999999999999999999999999999


Q ss_pred             EeCCC-hhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITN-EKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||.++ ..+++....|+..+......+.|+++++||+|+........                            .....
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~----------------------------~~~~~  136 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSE----------------------------EILNQ  136 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHH----------------------------HHHhh
Confidence            99999 55566667899998887756799999999999974321100                            00000


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHh---CCceEEeecc--CCCCHHHHHHHHHHHHHhcc
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREY---GVRFMETSAK--ANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~--~~~gi~~l~~~l~~~~~~~~  225 (253)
                      ..      +.     .............   ...++++|++  ++.+++++|..+.+.+....
T Consensus       137 ~~------~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         137 LN------RE-----VVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             hh------cC-----cchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhh
Confidence            00      00     1111222222222   3348999999  99999999999999886543

>cd01878 HflX HflX subfamily

Probab=99.91  E-value=1.9e-23  Score=164.19  Aligned_cols=158  Identities=15%  Similarity=0.111  Sum_probs=111.6

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc--cch------h
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT--ITT------S   77 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~------~   77 (253)
                      ....++|+|+|++|||||||++++.+..+.....+....+.....+.+.+. ..+.+|||||......  ...      .
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~  116 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLE  116 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHH
Confidence            355689999999999999999999987643322222122233333433332 3699999999732110  111      1


Q ss_pred             hhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621          78 YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS  157 (253)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (253)
                      .+..+|++++|+|++++.++.....|...+......++|+++|+||+|+.                              
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~------------------------------  166 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL------------------------------  166 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC------------------------------
Confidence            35689999999999999888887777777766554679999999999986                              


Q ss_pred             hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                      ....     .     .......+.+++++||+++.|++++++.|...
T Consensus       167 ----------------~~~~-----~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         167 ----------------DDEE-----L-----EERLEAGRPDAVFISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             ----------------ChHH-----H-----HHHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence                            1111     1     13344456789999999999999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.91  E-value=5.8e-24  Score=157.55  Aligned_cols=134  Identities=20%  Similarity=0.202  Sum_probs=98.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc-----cccccchhhhcCccEE
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE-----RFHTITTSYYRGAMGI   85 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~~~~~~~~~~~d~~   85 (253)
                      ||+++|++|||||||+++|.+..+.  +.++.++++.            -.+|||||..     .+..+. ..++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~~------------~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEYN------------DGAIDTPGEYVENRRLYSALI-VTAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEEc------------CeeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence            8999999999999999999977542  3444433332            1689999972     223332 347899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      |+|||++++.++.. ..|...+      ..|+++++||+|+.                                      
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~--------------------------------------  101 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLA--------------------------------------  101 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccC--------------------------------------
Confidence            99999999998765 3443321      24999999999985                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHH
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELA  218 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~  218 (253)
                              + ..     ...+...++++..+. +++++||++|.|++++|..+.
T Consensus       102 --------~-~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       102 --------E-AD-----VDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             --------C-cc-----cCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence                    1 11     223445667777775 899999999999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG1673|consensus

Probab=99.91  E-value=1.9e-23  Score=149.24  Aligned_cols=171  Identities=21%  Similarity=0.459  Sum_probs=147.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      .-.+||.++|++..|||||+-++..+.+++.+..+.|+++..+++.+.+.++.+.+||..|++++.++....+.++-+++
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl   97 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL   97 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence            34689999999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |+||++.+.++..+..|+++-+...+..+|+ ++|+|.|+.-+                                     
T Consensus        98 FmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~-------------------------------------  139 (205)
T KOG1673|consen   98 FMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFID-------------------------------------  139 (205)
T ss_pred             EEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhc-------------------------------------
Confidence            9999999999999999999999888777776 56899997510                                     


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                             -+++  ..+-....++.+++-.+.++|++|+....||.++|..+...+.+-
T Consensus       140 -------lp~e--~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL  188 (205)
T KOG1673|consen  140 -------LPPE--LQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNL  188 (205)
T ss_pred             -------CCHH--HHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCC
Confidence                   0111  011233456778888899999999999999999999998888764

>cd04171 SelB SelB subfamily

Probab=99.91  E-value=3.4e-23  Score=156.83  Aligned_cols=154  Identities=15%  Similarity=0.133  Sum_probs=102.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCC---CCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDA---FNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      +.|+++|.+|||||||+++|.+..   +...+.++...+.....+.+.. ...+.+|||||++.|......++.++|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            478999999999999999998632   3222223333333333344432 457999999999988766667788999999


Q ss_pred             EEEeCCC---hhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          87 LVYDITN---EKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        87 lv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|+|+++   +.+.+.+.    .+. .. ...|+++++||+|+..+..                                
T Consensus        80 ~V~d~~~~~~~~~~~~~~----~~~-~~-~~~~~ilv~NK~Dl~~~~~--------------------------------  121 (164)
T cd04171          80 LVVAADEGIMPQTREHLE----ILE-LL-GIKRGLVVLTKADLVDEDW--------------------------------  121 (164)
T ss_pred             EEEECCCCccHhHHHHHH----HHH-Hh-CCCcEEEEEECccccCHHH--------------------------------
Confidence            9999987   33333222    121 11 2249999999999862100                                


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHH---hCCceEEeeccCCCCHHHHHHHHHH
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIARE---YGVRFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                                  ..     ....+..+..+.   .+.+++++||+++.|++++++.+.+
T Consensus       122 ------------~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         122 ------------LE-----LVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             ------------HH-----HHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence                        00     111222333333   3579999999999999999998864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=1.5e-22  Score=168.97  Aligned_cols=162  Identities=11%  Similarity=0.099  Sum_probs=114.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc----ccccchhh---hcCc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----FHTITTSY---YRGA   82 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~---~~~~   82 (253)
                      -.|+|||.||||||||+++++..+......|........-.+.+. ....+.+||+||..+    ...+...|   +..+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            468999999999999999999765332211111111211223332 334699999999743    22344444   4579


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          83 MGIMLVYDITNEKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      +++|+|+|+++.++++.+..|..++..+..  .+.|+++|+||+|+..                                
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~--------------------------------  285 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD--------------------------------  285 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC--------------------------------
Confidence            999999999988889999999999887653  4789999999999862                                


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                    ...     ......+.+++..+.+++++||++++|++++++.|.+.+..
T Consensus       286 --------------~~~-----~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        286 --------------EEE-----EREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             --------------chh-----HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence                          111     11222334445566899999999999999999999988765

>PRK04213 GTP-binding protein; Provisional

Probab=99.90  E-value=2e-23  Score=163.70  Aligned_cols=159  Identities=16%  Similarity=0.174  Sum_probs=103.7

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCc-----------c
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ-----------E   69 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----------~   69 (253)
                      |-..+....++|+++|.+|||||||+++|.+..+.....+  +.++....+.+.    .+.+|||||.           +
T Consensus         1 ~~~~~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~   74 (201)
T PRK04213          1 MFETRPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQE   74 (201)
T ss_pred             CCcccCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHH
Confidence            3444556688999999999999999999998776554444  334443444333    5899999993           4


Q ss_pred             cccccchhhhc----CccEEEEEEeCCChhhHH----------HHHHHHHHHHHhcccccceeEEeeeeccccccccccc
Q psy9621          70 RFHTITTSYYR----GAMGIMLVYDITNEKSFD----------NILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTI  135 (253)
Q Consensus        70 ~~~~~~~~~~~----~~d~~ilv~d~~~~~s~~----------~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~  135 (253)
                      .+..++..++.    .++++++|+|.++...+.          .....+..+   ...++|+++|+||+|+...      
T Consensus        75 ~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~p~iiv~NK~Dl~~~------  145 (201)
T PRK04213         75 KIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFL---RELGIPPIVAVNKMDKIKN------  145 (201)
T ss_pred             HHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHH---HHcCCCeEEEEECccccCc------
Confidence            45444444443    456888888876432210          001112221   1257999999999998511      


Q ss_pred             cccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---------ceEEeeccC
Q psy9621         136 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---------RFMETSAKA  206 (253)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~  206 (253)
                                                              .        .+...++++.+++         +++++||++
T Consensus       146 ----------------------------------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  177 (201)
T PRK04213        146 ----------------------------------------R--------DEVLDEIAERLGLYPPWRQWQDIIAPISAKK  177 (201)
T ss_pred             ----------------------------------------H--------HHHHHHHHHHhcCCccccccCCcEEEEeccc
Confidence                                                    1        1123334444443         589999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy9621         207 NINIEKAFIELATAIYD  223 (253)
Q Consensus       207 ~~gi~~l~~~l~~~~~~  223 (253)
                      | |+++++++|.+.+..
T Consensus       178 g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        178 G-GIEELKEAIRKRLHE  193 (201)
T ss_pred             C-CHHHHHHHHHHhhcC
Confidence            9 999999999987644

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.90  E-value=5.4e-23  Score=160.37  Aligned_cols=115  Identities=18%  Similarity=0.217  Sum_probs=87.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc--CCCCCcc------------cCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD--DAFNTTF------------ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI   74 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   74 (253)
                      ..+|+++|++|+|||||+++|..  +.+...+            .++.+.++......+..+...+.+|||||++.|...
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~   81 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE   81 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence            35899999999999999999986  4444332            123455555555556666788999999999999999


Q ss_pred             chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ...+++++|++++|||+++.. +.....++..+..   .++|+++++||+|+.
T Consensus        82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~  130 (194)
T cd01891          82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRP  130 (194)
T ss_pred             HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCC
Confidence            999999999999999998742 2222334443332   478999999999986

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG0075|consensus

Probab=99.89  E-value=5.7e-23  Score=145.48  Aligned_cols=155  Identities=22%  Similarity=0.389  Sum_probs=130.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+.+.++|..++|||||++.+..+.+.++..|++|+++.    .+..+.+.+.+||.+|+..|+.+|..|+++++++++|
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            678999999999999999999999999999999996654    3455789999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      +|+.+++.++..+..+..++... -.++|++++|||+|+.++-+                                    
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~------------------------------------  139 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS------------------------------------  139 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc------------------------------------
Confidence            99999999999887777765543 37899999999999874311                                    


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhC--------CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYG--------VRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                          -..+..+.|        +..|.+|+++..|++.+.++|++....
T Consensus       140 --------------------~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk~  183 (186)
T KOG0075|consen  140 --------------------KIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSKS  183 (186)
T ss_pred             --------------------HHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhhh
Confidence                                122223332        567999999999999999999886543

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.89  E-value=5e-22  Score=149.56  Aligned_cols=148  Identities=18%  Similarity=0.157  Sum_probs=107.9

Q ss_pred             EEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc------chhhhc--CccEE
Q psy9621          14 LIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI------TTSYYR--GAMGI   85 (253)
Q Consensus        14 vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~~--~~d~~   85 (253)
                      |+|++|+|||||++++.+..+.....+....+.....+.+++  ..+.+|||||+..+...      +..++.  ++|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998765544445444444445555554  46999999999876643      445554  99999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      |+|+|++++....   .+...+..   .++|+++++||+|+..                                     
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~-------------------------------------  115 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAE-------------------------------------  115 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcc-------------------------------------
Confidence            9999998865432   34333332   4689999999999862                                     


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                               ...     +. .....+++.++++++++||.++.|++++++.|.+..
T Consensus       116 ---------~~~-----~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~  156 (158)
T cd01879         116 ---------KRG-----IK-IDLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA  156 (158)
T ss_pred             ---------ccc-----ch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence                     111     11 223566777789999999999999999999998763

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG0071|consensus

Probab=99.89  E-value=8.9e-23  Score=143.41  Aligned_cols=162  Identities=22%  Similarity=0.373  Sum_probs=128.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      .+++|+++|..++||||++.++..+..... .||+|++....    ..+++.+.+||.+|++..+.+|+.|+.+.-++||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~-ipTvGFnvetV----tykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETV----TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCccc-ccccceeEEEE----EeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            478999999999999999999998765544 78888665533    3367899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |+|..+++.++..+..+..+.++.+ .+.|++|.+||.|+.++.++.++.+                             
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d-----------------------------  141 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQD-----------------------------  141 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHH-----------------------------
Confidence            9999999999999877777766543 7899999999999986654311110                             


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                                        ..+.+. ++....-+.+++|.+|.|+.+-|.+|.....
T Consensus       142 ------------------~leLe~-~r~~~W~vqp~~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  142 ------------------KLELER-IRDRNWYVQPSCALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             ------------------Hhcccc-ccCCccEeeccccccchhHHHHHHHHHhhcc
Confidence                              111111 3333466789999999999999999987653

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.89  E-value=2.4e-22  Score=144.30  Aligned_cols=114  Identities=30%  Similarity=0.631  Sum_probs=89.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCC--CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFN--TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      ||+|+|++|||||||+++|.+..+.  ..+.+..+.++.............+.+||++|++.+...+..++..+|++|+|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999988776  22233444455555666777777799999999999988888889999999999


Q ss_pred             EeCCChhhHHHHHH---HHHHHHHhcccccceeEEeeeec
Q psy9621          89 YDITNEKSFDNILK---WLRNIDEHANEDVEKMILGKTKD  125 (253)
Q Consensus        89 ~d~~~~~s~~~~~~---~~~~i~~~~~~~~p~iiv~nK~D  125 (253)
                      ||++++.+++.+..   |+..+.... .++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            99999999999854   555555544 5699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.89  E-value=3.2e-22  Score=152.22  Aligned_cols=162  Identities=16%  Similarity=0.106  Sum_probs=107.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      .|+|+|++|+|||||+++|....+.....+....+.....+... .....+.+|||||+..|..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            58999999999999999999877766533333323322233332 13567999999999998888888899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      |+++....... ..+..+..   .++|+++++||+|+....                           .+.+......+ 
T Consensus        82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~---------------------------~~~~~~~~~~~-  129 (168)
T cd01887          82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNAN---------------------------PERVKNELSEL-  129 (168)
T ss_pred             ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceeccccc---------------------------HHHHHHHHHHh-
Confidence            99875322211 11222222   478999999999986210                           00000000000 


Q ss_pred             hhcCCCchhhhhhccchhHHHH--HHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAI--AREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                                        ....  .....++++++||++|.|+++++++|.+...
T Consensus       130 ------------------~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         130 ------------------GLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             ------------------hccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence                              0000  0012368999999999999999999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG0096|consensus

Probab=99.89  E-value=1.1e-22  Score=150.23  Aligned_cols=170  Identities=28%  Similarity=0.536  Sum_probs=146.7

Q ss_pred             CCccccC-ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhh
Q psy9621           1 MAKKTYD-FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYY   79 (253)
Q Consensus         1 m~~~~~~-~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   79 (253)
                      |...+.+ .++|++++|+-|.||||++.+.+.+.|...+.+++|++..+....-+.+.+++..|||.|++.+..+...++
T Consensus         1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy   80 (216)
T KOG0096|consen    1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY   80 (216)
T ss_pred             CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence            5555444 799999999999999999999999999999999999999887776666679999999999999999999999


Q ss_pred             cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621          80 RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD  159 (253)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (253)
                      -+.-.+||+||++.+.++.++.+|...+.+.+ .++||++.|||.|...                               
T Consensus        81 I~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~-------------------------------  128 (216)
T KOG0096|consen   81 IQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKA-------------------------------  128 (216)
T ss_pred             EecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccc-------------------------------
Confidence            99999999999999999999999999998888 5699999999999852                               


Q ss_pred             hHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         160 NILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                      +.      .....-.+-+..++.+++.||+++.|++.-|-++.+.+...
T Consensus       129 ----------------r~------~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G~  171 (216)
T KOG0096|consen  129 ----------------RK------VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTGD  171 (216)
T ss_pred             ----------------cc------cccccceeeecccceeEEeecccccccccchHHHhhhhcCC
Confidence                            21      11222334456678999999999999999999999988654

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.89  E-value=1.2e-21  Score=145.63  Aligned_cols=153  Identities=46%  Similarity=0.792  Sum_probs=119.4

Q ss_pred             EEcCCCCcHHHHHHHhhcCCC-CCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCC
Q psy9621          14 LIGDSGVGKTCVLFRFSDDAF-NTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT   92 (253)
Q Consensus        14 vvG~~~~GKStL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   92 (253)
                      |+|++|+|||||++++.+... .....++. .++.............+.+||+||...+......+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998777 45545555 6676666766677889999999999888877788899999999999999


Q ss_pred             ChhhHHHHHHHH-HHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhh
Q psy9621          93 NEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH  171 (253)
Q Consensus        93 ~~~s~~~~~~~~-~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (253)
                      ++.++.....|. .........+.|+++++||+|+...                                          
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~------------------------------------------  117 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE------------------------------------------  117 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc------------------------------------------
Confidence            999999888773 2223334478999999999998621                                          


Q ss_pred             cCCCchhhhhhccch-hHHHHHHHhCCceEEeeccCCCCHHHHHHHHH
Q psy9621         172 ANEDPQVVNSWVCKH-RGEAIAREYGVRFMETSAKANINIEKAFIELA  218 (253)
Q Consensus       172 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  218 (253)
                          ..     .... ...........+++++|+.++.|+++++++|.
T Consensus       118 ----~~-----~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         118 ----RV-----VSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             ----cc-----hHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence                11     1111 13344455568999999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=7.1e-22  Score=173.21  Aligned_cols=178  Identities=16%  Similarity=0.160  Sum_probs=116.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCccc--------ccccchhhh
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER--------FHTITTSYY   79 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~   79 (253)
                      ..+|+|+|.+|||||||+++|.+..... ...+.+..+.....+...+  ..+.+|||||.+.        +......++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            4699999999999999999999866432 2233332233333334443  4589999999763        233345578


Q ss_pred             cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621          80 RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD  159 (253)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (253)
                      +.+|++|+|||+++..++.. ..+...+..   .++|+++|+||+|+..                               
T Consensus       116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~-------------------------------  160 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDER-------------------------------  160 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCc-------------------------------
Confidence            89999999999998766543 234343332   4799999999999851                               


Q ss_pred             hHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEee
Q psy9621         160 NILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTI  239 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  239 (253)
                                     ..        .+..+.+....+ ..+++||++|.|++++|+.|...+..............++.+
T Consensus       161 ---------------~~--------~~~~~~~~~g~~-~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~i  216 (472)
T PRK03003        161 ---------------GE--------ADAAALWSLGLG-EPHPVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVAL  216 (472)
T ss_pred             ---------------cc--------hhhHHHHhcCCC-CeEEEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEE
Confidence                           10        011111122222 347999999999999999999988653222211223456666


Q ss_pred             cCCCCCCC
Q psy9621         240 DKKPDRGG  247 (253)
Q Consensus       240 ~~~~~~~~  247 (253)
                      -..++-||
T Consensus       217 iG~~nvGK  224 (472)
T PRK03003        217 VGKPNVGK  224 (472)
T ss_pred             ECCCCCCH
Confidence            66666664

>KOG3883|consensus

Probab=99.88  E-value=4.1e-21  Score=137.05  Aligned_cols=174  Identities=22%  Similarity=0.302  Sum_probs=141.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCC--cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc-cccchhhhcCcc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT--TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF-HTITTSYYRGAM   83 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~d   83 (253)
                      ..-.||+|.|..++|||+++.+++.++-.+  .+.||+.-.|....-+.++-.-.+.++||.|...+ ..+-+.|+.-+|
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            456799999999999999999999766543  46677764454443344455567999999998877 667788999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      ++++||+..+++||+.+.-+...|.++.. +.+|+++++||+|++                                   
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~-----------------------------------  131 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA-----------------------------------  131 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc-----------------------------------
Confidence            99999999999999999877777777653 789999999999998                                   


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCC
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPL  231 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~  231 (253)
                                 ++.+     +..+.+..||++-.+.+++|+|.+-..+-+-|..+...+...+..+.-+
T Consensus       132 -----------~p~~-----vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~pqskS~Fp  184 (198)
T KOG3883|consen  132 -----------EPRE-----VDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQPQSKSTFP  184 (198)
T ss_pred             -----------cchh-----cCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccCCcccccCc
Confidence                       4555     7778889999999999999999999999999998888776655444433

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.88  E-value=1.4e-21  Score=144.67  Aligned_cols=148  Identities=16%  Similarity=0.208  Sum_probs=101.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc------ccchhhh--cC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH------TITTSYY--RG   81 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~--~~   81 (253)
                      |+|+++|.||||||||+|++.+.+......|...++...-.+.+.+  ..+.++|+||-....      .....++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999999876544445444455444555554  669999999953332      2223333  68


Q ss_pred             ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621          82 AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI  161 (253)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      .|++|.|+|+++.+.-   .+...++.   +.++|+++++||+|.+..                                
T Consensus        79 ~D~ii~VvDa~~l~r~---l~l~~ql~---e~g~P~vvvlN~~D~a~~--------------------------------  120 (156)
T PF02421_consen   79 PDLIIVVVDATNLERN---LYLTLQLL---ELGIPVVVVLNKMDEAER--------------------------------  120 (156)
T ss_dssp             SSEEEEEEEGGGHHHH---HHHHHHHH---HTTSSEEEEEETHHHHHH--------------------------------
T ss_pred             CCEEEEECCCCCHHHH---HHHHHHHH---HcCCCEEEEEeCHHHHHH--------------------------------
Confidence            9999999999875422   22323333   357999999999998722                                


Q ss_pred             HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHH
Q psy9621         162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIEL  217 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  217 (253)
                                    .      -..-....+.+.+|+|++.+||+++.|+++|++.|
T Consensus       121 --------------~------g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  121 --------------K------GIEIDAEKLSERLGVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             --------------T------TEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred             --------------c------CCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence                          1      11224678889999999999999999999999865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.88  E-value=1.5e-21  Score=164.24  Aligned_cols=156  Identities=18%  Similarity=0.193  Sum_probs=108.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc--ccccc------hhh
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER--FHTIT------TSY   78 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~------~~~   78 (253)
                      +..++|+++|.+|||||||+|+|.+..+.....+....+.....+.+.+ ...+.+|||+|...  ...+.      ...
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tle~  265 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATLEE  265 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHHHH
Confidence            3458999999999999999999998764332222112344445565543 24689999999722  11111      124


Q ss_pred             hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      +.++|++++|+|++++.+++.+..|...+......+.|+++|+||+|+.                               
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~-------------------------------  314 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL-------------------------------  314 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC-------------------------------
Confidence            7899999999999999888777666665555444578999999999986                               


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                     ....     +     .... ....+++++||++|.|++++++.|...
T Consensus       315 ---------------~~~~-----v-----~~~~-~~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       315 ---------------DEPR-----I-----ERLE-EGYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             ---------------ChHh-----H-----HHHH-hCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence                           1111     1     0111 112468999999999999999998754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.88  E-value=2.6e-21  Score=161.44  Aligned_cols=159  Identities=11%  Similarity=0.111  Sum_probs=111.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc----cccchhhhc---Cc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF----HTITTSYYR---GA   82 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~~~~~~~---~~   82 (253)
                      -.|+|+|.+|||||||++++..........|........-.+.+. ....+.+||+||..+.    ..+...+++   .+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            468999999999999999999765322111111111111223333 2367999999997532    244445544   69


Q ss_pred             cEEEEEEeCCCh---hhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621          83 MGIMLVYDITNE---KSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS  157 (253)
Q Consensus        83 d~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (253)
                      +++++|+|+++.   ++++.+..|.+++..+..  .+.|++||+||+|+..                             
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~-----------------------------  287 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD-----------------------------  287 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC-----------------------------
Confidence            999999999987   678888888888776642  4789999999999861                             


Q ss_pred             hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                                       ..      ......+.+++..+.+++++||++++|++++++.|.+.+
T Consensus       288 -----------------~~------~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       288 -----------------EE------ELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             -----------------hH------HHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence                             11      112234455666678999999999999999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.88  E-value=1.9e-21  Score=173.69  Aligned_cols=159  Identities=18%  Similarity=0.243  Sum_probs=117.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCC-------CCCcccC------ccceeeEEEEEee-----CCeEEEEEEEeCCCcc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDA-------FNTTFIS------TIGIDFKIKTVDL-----KGKKIKLQIWDTAGQE   69 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~   69 (253)
                      ...|++++|+.++|||||+++|+...       +...+..      ..|+++....+.+     ++..+.+++|||||+.
T Consensus         2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~   81 (595)
T TIGR01393         2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   81 (595)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence            46799999999999999999998632       2222222      2355555444433     3556889999999999


Q ss_pred             cccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEE
Q psy9621          70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLV  149 (253)
Q Consensus        70 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  149 (253)
                      .|...+..+++.+|++|+|||+++..+......|...+.    .++|+++++||+|+...                    
T Consensus        82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~--------------------  137 (595)
T TIGR01393        82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSA--------------------  137 (595)
T ss_pred             HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCcc--------------------
Confidence            999889999999999999999998777766666654432    46899999999998511                    


Q ss_pred             EeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         150 YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                                       .......++.+.+++   .++++||++|.|++++|+.|.+.+..
T Consensus       138 ---------------------------------~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       138 ---------------------------------DPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             ---------------------------------CHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence                                             001112344444554   48999999999999999999987754

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>TIGR00436 era GTP-binding protein Era

Probab=99.87  E-value=4.1e-21  Score=157.04  Aligned_cols=155  Identities=14%  Similarity=0.076  Sum_probs=103.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCccc--CccceeeEEEEEeeCCeEEEEEEEeCCCcccccc-c-------chhhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFI--STIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT-I-------TTSYYR   80 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~-------~~~~~~   80 (253)
                      +|+++|.+|||||||+|+|.+..+.....  .|.. + ....+... ...++.+|||||...... +       ...++.
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr-~-~i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~   78 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTR-N-RISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG   78 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCccc-C-cEEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence            68999999999999999999876543211  1211 1 11122222 335699999999754321 1       234578


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      ++|++++|+|+++..+..  ..++..+..   .+.|+++|+||+|+.                                 
T Consensus        79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~---------------------------------  120 (270)
T TIGR00436        79 GVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNK---------------------------------  120 (270)
T ss_pred             hCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCC---------------------------------
Confidence            999999999999876654  334443332   468999999999985                                 


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                   ....      .......++...+. +++++||++|.|++++++.|...+....
T Consensus       121 -------------~~~~------~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~  167 (270)
T TIGR00436       121 -------------FKDK------LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGP  167 (270)
T ss_pred             -------------CHHH------HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence                         1111      11122333444443 8899999999999999999988775533

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.87  E-value=4e-21  Score=148.84  Aligned_cols=172  Identities=17%  Similarity=0.200  Sum_probs=111.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCcc--------------ceeeEEEEEeeCCeEEEEEEEeCCCcccccccch
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTI--------------GIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITT   76 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   76 (253)
                      +|+|+|.+|+|||||++++..........+..              +.+..............+.+|||||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            58999999999999999998776654432211              1222222222333356799999999998888888


Q ss_pred             hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCcc
Q psy9621          77 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEK  156 (253)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (253)
                      .+++.+|++++|+|++++.+... ..++..+..   .+.|+++++||+|+..+                          +
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~--------------------------~  130 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGE--------------------------E  130 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcch--------------------------h
Confidence            89999999999999987654433 233333322   57999999999998621                          1


Q ss_pred             chhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         157 SFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                      .+.....+..+......         ........+......+++++||++|.|+++++..|.+.+
T Consensus       131 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         131 DLEEVLREIKELLGLIG---------FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             cHHHHHHHHHHHHcccc---------ccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence            11222221111111000         000011122223458999999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.87  E-value=6.4e-21  Score=143.13  Aligned_cols=146  Identities=17%  Similarity=0.200  Sum_probs=104.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc--------chhhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI--------TTSYYR   80 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~   80 (253)
                      ++|+++|++|+|||||++++.+..... ...+....+.....+...  ...+.+|||||...+...        ...++.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            589999999999999999999765422 212222223332333333  456899999998665332        224667


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      .+|++++|+|++++.+......+..      ..+.|+++++||+|+.                                 
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~---------------------------------  120 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLL---------------------------------  120 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcC---------------------------------
Confidence            9999999999998877776554433      2579999999999986                                 


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                                   ....     .       .....+.+++++||+++.|+++++++|...+
T Consensus       121 -------------~~~~-----~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         121 -------------PDSE-----L-------LSLLAGKPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             -------------Cccc-----c-------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence                         1111     1       2344467999999999999999999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=1.3e-20  Score=161.21  Aligned_cols=159  Identities=13%  Similarity=0.160  Sum_probs=112.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc----ccccchhhh---cCcc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----FHTITTSYY---RGAM   83 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~---~~~d   83 (253)
                      .|+|+|.||||||||++++++.+......|....+...-.+.+. ....+.+||+||..+    ...+...|+   ..++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            79999999999999999999765332111111111111122222 145699999999743    334445554   4589


Q ss_pred             EEEEEEeCCCh---hhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          84 GIMLVYDITNE---KSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        84 ~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      ++|+|+|+++.   ++++....|.+++..+..  .+.|++||+||+|+.                               
T Consensus       239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~-------------------------------  287 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP-------------------------------  287 (424)
T ss_pred             EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc-------------------------------
Confidence            99999999865   677888888888877643  479999999999974                               


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                     .         .....+.+.+.++.+++++||+++.|++++++.|.+.+....
T Consensus       288 ---------------~---------~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        288 ---------------E---------AEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEETP  330 (424)
T ss_pred             ---------------C---------CHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence                           1         112335556666688999999999999999999998886643

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.86  E-value=1.9e-21  Score=146.54  Aligned_cols=143  Identities=15%  Similarity=0.157  Sum_probs=98.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc----cchhhhcCccEEE
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT----ITTSYYRGAMGIM   86 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~~~~~~~~d~~i   86 (253)
                      +|+++|.+|+|||||++++.+.. ... .++.++       .+...    .+|||||......    .....++++|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~-~~~-~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNY-TLA-RKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC-ccC-ccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            79999999999999999987542 211 222222       22222    2699999732211    1123468999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      +|+|+++..++.  ..|+..+    ..+.|+++++||+|+.                                       
T Consensus        70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~---------------------------------------  104 (158)
T PRK15467         70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMP---------------------------------------  104 (158)
T ss_pred             EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccC---------------------------------------
Confidence            999999887653  2344433    2467999999999985                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCC--ceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGV--RFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                             .        ...+...+++++.++  |++++||++|.|++++|+.+.+.+.+...
T Consensus       105 -------~--------~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  151 (158)
T PRK15467        105 -------D--------ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQEEA  151 (158)
T ss_pred             -------c--------ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhhhc
Confidence                   1        112334566667774  99999999999999999999887765443

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.86  E-value=1.3e-20  Score=162.90  Aligned_cols=154  Identities=19%  Similarity=0.193  Sum_probs=113.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc--------chh
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI--------TTS   77 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~   77 (253)
                      ...+||+++|++|||||||+|+|.+.... ....+....++....+.+++  ..+.+|||||..++...        ...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            35689999999999999999999976432 22223333455555565654  45799999998655432        235


Q ss_pred             hhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621          78 YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS  157 (253)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (253)
                      +++.+|++++|||++++.+++..  |+..+..   .+.|+++|+||+|+.                              
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~------------------------------  323 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLK------------------------------  323 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCC------------------------------
Confidence            77899999999999998887765  6655532   468999999999985                              


Q ss_pred             hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                      ..           ....+++.++.+++++||++ .||+++|+.|.+.+.+.-
T Consensus       324 ----------------~~-----------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       324 ----------------IN-----------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFY  363 (442)
T ss_pred             ----------------Cc-----------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence                            11           12344566778899999998 599999999999887643

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK15494 era GTPase Era; Provisional

Probab=99.86  E-value=7.1e-21  Score=159.89  Aligned_cols=158  Identities=18%  Similarity=0.208  Sum_probs=105.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccce--eeEEEEEeeCCeEEEEEEEeCCCccc-ccccch-------
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGI--DFKIKTVDLKGKKIKLQIWDTAGQER-FHTITT-------   76 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~-------   76 (253)
                      ...++|+++|.+|||||||+++|.+..+... .+..+.  +.....+..+  ..++.+|||||..+ +..+..       
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~iv-s~k~~tTr~~~~~~~~~~--~~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIV-TPKVQTTRSIITGIITLK--DTQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeec-cCCCCCccCcEEEEEEeC--CeEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            4567999999999999999999998776432 222222  2222233333  35689999999853 222221       


Q ss_pred             hhhcCccEEEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621          77 SYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE  155 (253)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (253)
                      ..+.++|++++|+|.++  ++.... .|+..+..   .+.|.++++||+|+..                           
T Consensus       127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~---------------------------  174 (339)
T PRK15494        127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIES---------------------------  174 (339)
T ss_pred             HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCcc---------------------------
Confidence            24679999999999765  344443 34444433   3467789999999851                           


Q ss_pred             cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                         .       . .....+++...+  ..+|++||++|.|++++|++|...+.....
T Consensus       175 -------------------~-------~-~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~  220 (339)
T PRK15494        175 -------------------K-------Y-LNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPW  220 (339)
T ss_pred             -------------------c-------c-HHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCC
Confidence                               1       0 112333333333  579999999999999999999887766443

>KOG4423|consensus

Probab=99.86  E-value=1.2e-23  Score=154.84  Aligned_cols=171  Identities=35%  Similarity=0.609  Sum_probs=147.4

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCe-EEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK-KIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      ..+..+|++|+|..|+|||+++.+++...+...|+.++|+++.-+.+..+.+ .+++++||..|+++|..+...+++.+.
T Consensus        21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~  100 (229)
T KOG4423|consen   21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH  100 (229)
T ss_pred             hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence            3578899999999999999999999998899999999999999887777654 467899999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhc----ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHA----NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD  159 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (253)
                      +..+|||+++..+|+....|.+.+....    +..+|+++..||+|...                               
T Consensus       101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~-------------------------------  149 (229)
T KOG4423|consen  101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEK-------------------------------  149 (229)
T ss_pred             ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccCh-------------------------------
Confidence            9999999999999999999999986553    36789999999999861                               


Q ss_pred             hHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         160 NILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                     ...    .-......++++++|+ .++++|++.+.+++++-..++.++..+.
T Consensus       150 ---------------~a~----~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  150 ---------------SAK----NEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVND  197 (229)
T ss_pred             ---------------Hhh----hhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhc
Confidence                           110    0123456788899995 8999999999999999999999887765

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.86  E-value=1e-20  Score=147.60  Aligned_cols=167  Identities=14%  Similarity=0.133  Sum_probs=109.9

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc----------c
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE----------R   70 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~   70 (253)
                      |.+.+.+..++|+++|++|+|||||++++.+..+...+.++.+.+........   ...+.+|||||..          .
T Consensus        16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~   92 (196)
T PRK00454         16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEK   92 (196)
T ss_pred             HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHH
Confidence            44567788999999999999999999999987655555556554443332222   3679999999952          3


Q ss_pred             ccccchhhhcCc---cEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeE
Q psy9621          71 FHTITTSYYRGA---MGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIM  147 (253)
Q Consensus        71 ~~~~~~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (253)
                      +..+...+++.+   +++++++|.+++.+.... .+...+ ..  .++|+++++||+|+..                   
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l-~~--~~~~~iiv~nK~Dl~~-------------------  149 (196)
T PRK00454         93 WQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWL-KE--YGIPVLIVLTKADKLK-------------------  149 (196)
T ss_pred             HHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHH-HH--cCCcEEEEEECcccCC-------------------
Confidence            333444455544   678888898876443321 111122 22  4789999999999851                   


Q ss_pred             EEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         148 LVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                                 ..+..   ...............+++++||+++.|++++++.|...+.+
T Consensus       150 ---------------------------~~~~~---~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        150 ---------------------------KGERK---KQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             ---------------------------HHHHH---HHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence                                       11100   11112233333336789999999999999999999877643

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.86  E-value=3.2e-21  Score=147.72  Aligned_cols=153  Identities=15%  Similarity=0.187  Sum_probs=103.6

Q ss_pred             EEcCCCCcHHHHHHHhhcCCCC-Ccc-cCccceeeEEEEEeeCCeEEEEEEEeCCCccc----ccccc---hhhhcCccE
Q psy9621          14 LIGDSGVGKTCVLFRFSDDAFN-TTF-ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----FHTIT---TSYYRGAMG   84 (253)
Q Consensus        14 vvG~~~~GKStL~~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~---~~~~~~~d~   84 (253)
                      ++|++|||||||++++.+.... ..+ ..|....+  ..+.+. ....+.+|||||...    ...+.   ...++++|+
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~   77 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNL--GVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA   77 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcc--eEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence            5899999999999999987541 111 11222111  222233 145689999999732    22232   234678999


Q ss_pred             EEEEEeCCCh------hhHHHHHHHHHHHHHhcc-------cccceeEEeeeeccccccccccccccccccceeeEEEEe
Q psy9621          85 IMLVYDITNE------KSFDNILKWLRNIDEHAN-------EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYD  151 (253)
Q Consensus        85 ~ilv~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (253)
                      +++|+|++++      .++.....|...+.....       .+.|+++++||+|+...                      
T Consensus        78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~----------------------  135 (176)
T cd01881          78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA----------------------  135 (176)
T ss_pred             EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch----------------------
Confidence            9999999988      578887777777765432       47999999999998621                      


Q ss_pred             ccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         152 ITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                              ..     .............+.+++++||+++.|++++++.+...
T Consensus       136 ------------------------~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         136 ------------------------EE-----LEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             ------------------------hH-----HHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence                                    11     11111223344456789999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK11058 GTPase HflX; Provisional

Probab=99.86  E-value=1.5e-20  Score=161.72  Aligned_cols=157  Identities=18%  Similarity=0.183  Sum_probs=108.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc--cccch------hhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF--HTITT------SYYRG   81 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~------~~~~~   81 (253)
                      .+|+++|.+|||||||+|+|.+........+....+.....+.+.+. ..+.+|||+|....  ..++.      ..++.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            58999999999999999999986654322222233444444555432 25789999997432  22222      23588


Q ss_pred             ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621          82 AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI  161 (253)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      +|++|+|+|++++.+++.+..|...+......++|+++|+||+|+.                                  
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~----------------------------------  322 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML----------------------------------  322 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC----------------------------------
Confidence            9999999999999888877655554444444579999999999985                                  


Q ss_pred             HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCc-eEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVR-FMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                  ....      .  ...  ....+.+ ++++||++|.|++++++.|...+..
T Consensus       323 ------------~~~~------~--~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        323 ------------DDFE------P--RID--RDEENKPIRVWLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             ------------Cchh------H--HHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence                        1100      0  000  0123444 4899999999999999999998754

>cd01889 SelB_euk SelB subfamily

Probab=99.86  E-value=5.8e-21  Score=148.64  Aligned_cols=160  Identities=16%  Similarity=0.111  Sum_probs=100.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcC----CCCCcc---c--CccceeeEEEEEe----------eCCeEEEEEEEeCCCccc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDD----AFNTTF---I--STIGIDFKIKTVD----------LKGKKIKLQIWDTAGQER   70 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~----~~~~~~---~--~~~~~~~~~~~~~----------~~~~~~~~~l~Dt~G~~~   70 (253)
                      +||+++|++|+|||||+++|...    .+...+   .  .|.+..+....+.          .......+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999862    121111   1  2333333333332          123357899999999865


Q ss_pred             ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEE
Q psy9621          71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVY  150 (253)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  150 (253)
                      +..........+|++++|+|+++.........+.  +...  .+.|+++++||+|+.....                   
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~-------------------  137 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEE-------------------  137 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHH-------------------
Confidence            5333334456789999999998754433332222  1122  3679999999999852100                   


Q ss_pred             eccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHH-HHHH------HhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         151 DITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE-AIAR------EYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                                               ..     ...++.. .+.+      ..+++++++||++|.|++++++.|...+.
T Consensus       138 -------------------------~~-----~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         138 -------------------------RE-----RKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             -------------------------HH-----HHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence                                     00     0001111 1111      23579999999999999999999988765

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.86  E-value=1.7e-20  Score=166.80  Aligned_cols=161  Identities=16%  Similarity=0.141  Sum_probs=109.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ...+|+++|+.++|||||+++|.+..+.....+.+..+.....+.+.+. ..+.+|||||++.|..++...+..+|++|+
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            3478999999999999999999988776654443333343344444332 268999999999999999889999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      |+|+++...-+....    +......++|+++++||+|+.+.                           ..+.+..++.+
T Consensus       165 VVda~dgv~~qT~e~----i~~~~~~~vPiIVviNKiDl~~~---------------------------~~e~v~~~L~~  213 (587)
T TIGR00487       165 VVAADDGVMPQTIEA----ISHAKAANVPIIVAINKIDKPEA---------------------------NPDRVKQELSE  213 (587)
T ss_pred             EEECCCCCCHhHHHH----HHHHHHcCCCEEEEEECcccccC---------------------------CHHHHHHHHHH
Confidence            999987432222211    12222257999999999998521                           01111111110


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHH
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                      .                    ......++  .+++++||++|.|++++|+.|...
T Consensus       214 ~--------------------g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~~  248 (587)
T TIGR00487       214 Y--------------------GLVPEDWGGDTIFVPVSALTGDGIDELLDMILLQ  248 (587)
T ss_pred             h--------------------hhhHHhcCCCceEEEEECCCCCChHHHHHhhhhh
Confidence            0                    00112222  589999999999999999998753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=1.1e-20  Score=165.63  Aligned_cols=165  Identities=17%  Similarity=0.160  Sum_probs=111.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc----------cccccc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE----------RFHTIT   75 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~   75 (253)
                      +..+||+++|.+|||||||+++|++.... ....+....+.....+.+++.  .+.+|||||..          .|..++
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence            34689999999999999999999987642 233333334444455556554  46899999953          222222


Q ss_pred             -hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621          76 -TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN  154 (253)
Q Consensus        76 -~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (253)
                       ..+++.+|++|+|+|++++.++..+. ++..+..   .++|+++|+||+|+...                         
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~-------------------------  337 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDE-------------------------  337 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCh-------------------------
Confidence             23578999999999999988877764 3444332   57999999999998611                         


Q ss_pred             ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                           ...  .....+....+......+++++||++|.|++++|..+.+.+....
T Consensus       338 ---------------------~~~--~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~  385 (472)
T PRK03003        338 ---------------------DRR--YYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWD  385 (472)
T ss_pred             ---------------------hHH--HHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence                                 000  001111111222222368999999999999999999998875443

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.86  E-value=5.2e-21  Score=153.01  Aligned_cols=201  Identities=14%  Similarity=0.107  Sum_probs=124.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCC--------C-----cc---cCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFN--------T-----TF---ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI   74 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~--------~-----~~---~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   74 (253)
                      ||+++|+.|+|||||+++|+...-.        .     .+   ....+++.......+.....++.+|||||+.+|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            6899999999999999999753110        0     00   012233344444445556678999999999999888


Q ss_pred             chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc---cccccccccccceeeEEEEe
Q psy9621          75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER---FHTITTSYYRGAMGIMLVYD  151 (253)
Q Consensus        75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~  151 (253)
                      ...+++.+|++|+|+|+++.... ....++..+..   .++|+++++||+|+.+.+.   .+.+++.+-..  .+.++.+
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~--~~~~~~p  154 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSD--IVPMQKV  154 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccCCCHHHHHHHHHHHHCCC--eEEEECC
Confidence            88899999999999999886543 23344444433   4789999999999986542   23333322221  1112111


Q ss_pred             c----------cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHH-----HHHHHhCCceEEeeccCCCCHHHHHHH
Q psy9621         152 I----------TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE-----AIAREYGVRFMETSAKANINIEKAFIE  216 (253)
Q Consensus       152 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~l~~~  216 (253)
                      .          ...+..+.+.++-+++.+.+.+..+     +..++..     .+....-+|+|..||.++.|++.|++.
T Consensus       155 ~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~-----~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~  229 (237)
T cd04168         155 GLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGP-----IEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEG  229 (237)
T ss_pred             cEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCC-----CCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHH
Confidence            1          1123333333333333333333333     3322222     222222379999999999999999999


Q ss_pred             HHHHHH
Q psy9621         217 LATAIY  222 (253)
Q Consensus       217 l~~~~~  222 (253)
                      +.+.+.
T Consensus       230 ~~~~~p  235 (237)
T cd04168         230 ITKLFP  235 (237)
T ss_pred             HHHhcC
Confidence            988764

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01894 EngA1 EngA1 subfamily

Probab=99.85  E-value=1.2e-20  Score=141.69  Aligned_cols=146  Identities=14%  Similarity=0.095  Sum_probs=97.4

Q ss_pred             EEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc--------cchhhhcCcc
Q psy9621          13 LLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT--------ITTSYYRGAM   83 (253)
Q Consensus        13 ~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~~d   83 (253)
                      +++|.+|+|||||++++.+..... ...+....+.........  ...+.+|||||...+..        .....++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            489999999999999999764221 111221222222333333  35699999999987543        2345678899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ++++|+|..++.+.... ...+.+..   .+.|+++++||+|+.                                    
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~------------------------------------  118 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNI------------------------------------  118 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccC------------------------------------
Confidence            99999999876544332 12222222   359999999999986                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHH
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                ....     .     .......+. +++++|++++.|++++|++|.+.
T Consensus       119 ----------~~~~-----~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         119 ----------KEED-----E-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             ----------ChHH-----H-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence                      1111     1     222334555 78999999999999999999865

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.85  E-value=2.8e-20  Score=161.67  Aligned_cols=149  Identities=19%  Similarity=0.199  Sum_probs=109.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc--------hhh
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT--------TSY   78 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~   78 (253)
                      ..++|+++|.+|+|||||+|+|.+.... ....+....++....+.+++  ..+.+|||||..++....        ..+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            3579999999999999999999986542 22223223344444555544  468999999987654322        236


Q ss_pred             hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      +..+|++++|||++++.+++....|..      ..+.|+++|+||+|+.                               
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~-------------------------------  334 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLT-------------------------------  334 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhcc-------------------------------
Confidence            789999999999999888776544433      2578999999999986                               


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                     ....     ..        ...+.+++++||++|.|++++++.|.+.+..
T Consensus       335 ---------------~~~~-----~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        335 ---------------GEID-----LE--------EENGKPVIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             ---------------ccch-----hh--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence                           1111     10        2335688999999999999999999998764

>cd04169 RF3 RF3 subfamily

Probab=99.84  E-value=4.7e-20  Score=149.84  Aligned_cols=210  Identities=13%  Similarity=0.108  Sum_probs=123.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCC--CC---------------ccc---CccceeeEEEEEeeCCeEEEEEEEeCCCc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAF--NT---------------TFI---STIGIDFKIKTVDLKGKKIKLQIWDTAGQ   68 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~--~~---------------~~~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   68 (253)
                      ..+|+++|++|+|||||+++|+...-  ..               .+.   ...++++......+..+...+.+|||||+
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~   81 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH   81 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence            46899999999999999999974211  10               000   01133444455556666788999999999


Q ss_pred             ccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc---ccccccccccccee
Q psy9621          69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER---FHTITTSYYRGAMG  145 (253)
Q Consensus        69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~  145 (253)
                      .+|......+++.+|++|+|+|+++..... ...+++...   ..++|+++++||+|+.+...   .+++++.+-.....
T Consensus        82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~---~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~~  157 (267)
T cd04169          82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCR---LRGIPIITFINKLDREGRDPLELLDEIEEELGIDCTP  157 (267)
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHH---hcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCcee
Confidence            988877777889999999999998753322 223333222   24799999999999876643   23333321110000


Q ss_pred             -------------e-------EEEEecc-----------CccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH
Q psy9621         146 -------------I-------MLVYDIT-----------NEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE  194 (253)
Q Consensus       146 -------------~-------~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (253)
                                   +       ...|...           ..+..+.+.+..+++.+.+.+..+...........+.+...
T Consensus       158 ~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~~~e~~~~~~~~~~~~~~~~~~~~  237 (267)
T cd04169         158 LTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKLDELGGDLAEQLREELELLEGAGPEFDQEAFLAG  237 (267)
T ss_pred             EEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHHHHhcCHHHHHHHhCCCccchhhhHHHhHHHHHcC
Confidence                         0       0112000           11222334333344443333322211111111111222222


Q ss_pred             hCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         195 YGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       195 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                      .-+|++..||.++.|++.|++.|...+.
T Consensus       238 ~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P  265 (267)
T cd04169         238 ELTPVFFGSALNNFGVQELLDALVDLAP  265 (267)
T ss_pred             CEEEEEecccccCcCHHHHHHHHHHHCC
Confidence            2379999999999999999999988764

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.84  E-value=2e-20  Score=143.97  Aligned_cols=118  Identities=17%  Similarity=0.237  Sum_probs=81.1

Q ss_pred             ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc----------ccc
Q psy9621           3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE----------RFH   72 (253)
Q Consensus         3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~   72 (253)
                      +.+.+..++|+++|++|+|||||++++.+..+...+.++.+.+........+.   .+.+|||||..          .+.
T Consensus        12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~   88 (179)
T TIGR03598        12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ   88 (179)
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence            45668889999999999999999999998764444445555444433333332   58999999953          233


Q ss_pred             ccchhhhc---CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          73 TITTSYYR---GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        73 ~~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .+...+++   .++++++|+|++++.+.... .++..+..   .++|+++++||+|+.
T Consensus        89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~  142 (179)
T TIGR03598        89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKL  142 (179)
T ss_pred             HHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccC
Confidence            33344554   35799999999876554443 22233322   478999999999985

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.84  E-value=4e-20  Score=144.91  Aligned_cols=120  Identities=19%  Similarity=0.335  Sum_probs=91.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCc-cEEEEEE
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGA-MGIMLVY   89 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-d~~ilv~   89 (253)
                      +|+++|++|||||||+++|..+.+...+.++ ..+..............+.+||+||+..+......+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999998776665443 2222222221123456799999999999988888889998 9999999


Q ss_pred             eCCCh-hhHHHHHHHHHHHHHhc---ccccceeEEeeeeccccccc
Q psy9621          90 DITNE-KSFDNILKWLRNIDEHA---NEDVEKMILGKTKDTAGQER  131 (253)
Q Consensus        90 d~~~~-~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~  131 (253)
                      |+++. .++..+..|+..++...   ..++|+++++||+|+..+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~  126 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP  126 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence            99997 67777777766654432   26899999999999975443

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.84  E-value=7.8e-20  Score=163.23  Aligned_cols=172  Identities=19%  Similarity=0.239  Sum_probs=119.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcC---CCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDD---AFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      +.|+++|++++|||||+++|.+.   .++....+++.++.....+..++  ..+.+||+||++.|.......+.++|++|
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            47999999999999999999863   33444455555555555555554  67999999999999877777889999999


Q ss_pred             EEEeCCC---hhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          87 LVYDITN---EKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        87 lv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      +|+|+++   +.+++.+.    .+ ..  .++| +++++||+|+..+..                          ++   
T Consensus        79 LVVDa~~G~~~qT~ehl~----il-~~--lgi~~iIVVlNK~Dlv~~~~--------------------------~~---  122 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA----VL-DL--LGIPHTIVVITKADRVNEEE--------------------------IK---  122 (581)
T ss_pred             EEEECCCCCcHHHHHHHH----HH-HH--cCCCeEEEEEECCCCCCHHH--------------------------HH---
Confidence            9999998   34443332    12 11  3678 999999999862100                          00   


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHHh----CCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEe
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY----GVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVT  238 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~  238 (253)
                                          ....+..++.+..    +++++++||++|.|+++++..|...+......  ....+-++.
T Consensus       123 --------------------~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~--~~~~p~r~~  180 (581)
T TIGR00475       123 --------------------RTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIK--RIQKPLRMA  180 (581)
T ss_pred             --------------------HHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCc--CcCCCcEEE
Confidence                                1122334444443    47899999999999999999998776654332  123455555


Q ss_pred             ecC
Q psy9621         239 IDK  241 (253)
Q Consensus       239 ~~~  241 (253)
                      |+.
T Consensus       181 Id~  183 (581)
T TIGR00475       181 IDR  183 (581)
T ss_pred             EEE
Confidence            554

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.84  E-value=5.6e-20  Score=165.89  Aligned_cols=163  Identities=17%  Similarity=0.158  Sum_probs=111.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccce--eeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGI--DFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      ...+|+|+|+.++|||||+++|....+.....+.+..  ..+...+...+....+.+|||||++.|..++..++..+|++
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            4579999999999999999999987665443332221  22222333334567899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      |+|+|+++.........+    ......++|+++++||+|+...                           .++.+..++
T Consensus       323 ILVVDA~dGv~~QT~E~I----~~~k~~~iPiIVViNKiDl~~~---------------------------~~e~v~~eL  371 (742)
T CHL00189        323 ILIIAADDGVKPQTIEAI----NYIQAANVPIIVAINKIDKANA---------------------------NTERIKQQL  371 (742)
T ss_pred             EEEEECcCCCChhhHHHH----HHHHhcCceEEEEEECCCcccc---------------------------CHHHHHHHH
Confidence            999999874322222222    1112357999999999998621                           111111111


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                      ...                    ..+...++  ++++++||++|.|+++|++.|....
T Consensus       372 ~~~--------------------~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        372 AKY--------------------NLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             HHh--------------------ccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            100                    00122333  7999999999999999999998764

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.84  E-value=3.3e-20  Score=145.50  Aligned_cols=162  Identities=14%  Similarity=0.084  Sum_probs=98.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCC---CcccCc--cceeeEEEEEe-------------------e----C--C----
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFN---TTFIST--IGIDFKIKTVD-------------------L----K--G----   55 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~---~~~~~~--~~~~~~~~~~~-------------------~----~--~----   55 (253)
                      ++|+++|+.|+|||||+..+.....+   ......  +...+......                   .    .  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            58999999999999999999654211   111111  11111111100                   0    0  0    


Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccc
Q psy9621          56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTI  135 (253)
Q Consensus        56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~  135 (253)
                      ....+.+|||||++.|.......+..+|++++|+|++++.........+..+...  ...|+++++||+|+.....    
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~----  154 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQ----  154 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHH----
Confidence            1267899999999888777777778899999999998742111111122222211  2247899999999862100    


Q ss_pred             cccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh---CCceEEeeccCCCCHHH
Q psy9621         136 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY---GVRFMETSAKANINIEK  212 (253)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~  212 (253)
                                            +                  .     ...+..+++.+..   +++++++||++|.|+++
T Consensus       155 ----------------------~------------------~-----~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~  189 (203)
T cd01888         155 ----------------------A------------------L-----ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDV  189 (203)
T ss_pred             ----------------------H------------------H-----HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHH
Confidence                                  0                  0     0112223333332   57899999999999999


Q ss_pred             HHHHHHHHHH
Q psy9621         213 AFIELATAIY  222 (253)
Q Consensus       213 l~~~l~~~~~  222 (253)
                      +|+.|.+.+.
T Consensus       190 L~~~l~~~l~  199 (203)
T cd01888         190 LLEYIVKKIP  199 (203)
T ss_pred             HHHHHHHhCC
Confidence            9999987553

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.84  E-value=1.2e-19  Score=162.35  Aligned_cols=162  Identities=19%  Similarity=0.234  Sum_probs=115.0

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCC--CC-----Ccc------cCccceeeEEEEEee-----CCeEEEEEEEeCCC
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDA--FN-----TTF------ISTIGIDFKIKTVDL-----KGKKIKLQIWDTAG   67 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~--~~-----~~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G   67 (253)
                      .+...|++++|+.++|||||+.+|+...  +.     ..+      ....|+++....+.+     ++..+.+++|||||
T Consensus         4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG   83 (600)
T PRK05433          4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG   83 (600)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence            3557799999999999999999997521  11     111      112344444333322     34578899999999


Q ss_pred             cccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeE
Q psy9621          68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIM  147 (253)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (253)
                      +.+|...+..+++.+|++|+|+|+++.........|....    ..++|+++++||+|+...                  
T Consensus        84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a------------------  141 (600)
T PRK05433         84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAA------------------  141 (600)
T ss_pred             cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcc------------------
Confidence            9999988999999999999999999876555555554332    247899999999998511                  


Q ss_pred             EEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         148 LVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                                  .       ......++.+.+++   .++++||++|.|++++++.|...+...
T Consensus       142 ----------------------------~-------~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        142 ----------------------------D-------PERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             ----------------------------c-------HHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence                                        0       00112233333444   389999999999999999999887643

>KOG0076|consensus

Probab=99.83  E-value=1.5e-20  Score=137.06  Aligned_cols=162  Identities=20%  Similarity=0.286  Sum_probs=125.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc-------CCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcC
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD-------DAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRG   81 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   81 (253)
                      .+.|+++|..++|||||+.+...       +..+..-.+|+|.+.....+.    ...+.+||..|++..+++|..|+-.
T Consensus        17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~----~~~l~fwdlgGQe~lrSlw~~yY~~   92 (197)
T KOG0076|consen   17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC----NAPLSFWDLGGQESLRSLWKKYYWL   92 (197)
T ss_pred             hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec----cceeEEEEcCChHHHHHHHHHHHHH
Confidence            57899999999999999998763       222234567777666654443    4569999999999999999999999


Q ss_pred             ccEEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          82 AMGIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      ++++|+++|+++++.|+.....++.+..+. -.++|+++.+||.|+......                            
T Consensus        93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~----------------------------  144 (197)
T KOG0076|consen   93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEA----------------------------  144 (197)
T ss_pred             hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhH----------------------------
Confidence            999999999999999999888777775554 378999999999998733221                            


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh---CCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY---GVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                     .       ..+.....++..   ..++.++||.+|+||++...++.+.+.++
T Consensus       145 ---------------~-------El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  145 ---------------A-------ELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             ---------------H-------HHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence                           0       001111112332   37899999999999999999999999887

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.83  E-value=1.1e-19  Score=165.46  Aligned_cols=160  Identities=18%  Similarity=0.175  Sum_probs=109.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ...+|+|+|+.++|||||+++|....+.....+.+..+.....+.++  ...+.+|||||++.|..++...+..+|++||
T Consensus       289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            45789999999999999999998877665433333222322334444  3568999999999999999989999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      |||+++...-+....    +......++|++|++||+|+.+.                           .++.+...+.+
T Consensus       367 VVdAddGv~~qT~e~----i~~a~~~~vPiIVviNKiDl~~a---------------------------~~e~V~~eL~~  415 (787)
T PRK05306        367 VVAADDGVMPQTIEA----INHAKAAGVPIIVAINKIDKPGA---------------------------NPDRVKQELSE  415 (787)
T ss_pred             EEECCCCCCHhHHHH----HHHHHhcCCcEEEEEECcccccc---------------------------CHHHHHHHHHH
Confidence            999987422111111    22222357999999999998521                           11111111110


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHH
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                          ...++..++  ++++++||++|.|++++|+.|...
T Consensus       416 --------------------~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        416 --------------------YGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             --------------------hcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence                                011223344  799999999999999999998764

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.83  E-value=8.5e-20  Score=159.01  Aligned_cols=175  Identities=14%  Similarity=0.181  Sum_probs=113.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCc-ccCccceeeEEEEEeeCCeEEEEEEEeCCCcc--------cccccchhhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTT-FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE--------RFHTITTSYYRG   81 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~~   81 (253)
                      +|+++|.+|||||||+++|.+...... ..+....+.....+...+  ..+.+|||||..        .+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            589999999999999999998663221 122222233333344443  459999999963        333445567899


Q ss_pred             ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621          82 AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI  161 (253)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      +|++++|+|..+..+.... .+...+.+   .+.|+++|+||+|+..                                 
T Consensus        79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~---------------------------------  121 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKK---------------------------------  121 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCc---------------------------------
Confidence            9999999999875443331 22222222   3689999999999851                                 


Q ss_pred             HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeec
Q psy9621         162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID  240 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  240 (253)
                                   ...         ...+ ..++++ +++++||++|.|++++++.+.+.+..............++.+-
T Consensus       122 -------------~~~---------~~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~iv  178 (429)
T TIGR03594       122 -------------EDA---------VAAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAII  178 (429)
T ss_pred             -------------ccc---------cHHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEE
Confidence                         111         1111 235565 7999999999999999999998875543322222233456666


Q ss_pred             CCCCCCC
Q psy9621         241 KKPDRGG  247 (253)
Q Consensus       241 ~~~~~~~  247 (253)
                      ..++.||
T Consensus       179 G~~~~GK  185 (429)
T TIGR03594       179 GRPNVGK  185 (429)
T ss_pred             CCCCCCH
Confidence            6666553

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=1.8e-19  Score=157.14  Aligned_cols=173  Identities=17%  Similarity=0.200  Sum_probs=113.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc--------ccccchhhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER--------FHTITTSYYR   80 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~   80 (253)
                      .+|+++|.+|||||||+++|.+.... ....+....+.....+.+.+  ..+.+|||||...        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999976642 11123222333334444544  6799999999876        2223345778


Q ss_pred             CccEEEEEEeCCChhhHHH--HHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          81 GAMGIMLVYDITNEKSFDN--ILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      .+|++|+|+|++++.+...  +..|+..      .+.|+++++||+|+.                               
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~-------------------------------  122 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGP-------------------------------  122 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCc-------------------------------
Confidence            9999999999987544332  2334332      378999999999974                               


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeE
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRV  237 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~  237 (253)
                                     ..         .....++ ..+++ .++++||++|.|++++|+.+......... ........++
T Consensus       123 ---------------~~---------~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~-~~~~~~~~~v  176 (435)
T PRK00093        123 ---------------DE---------EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEE-EDEEDEPIKI  176 (435)
T ss_pred             ---------------cc---------hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCcccc-ccccccceEE
Confidence                           10         0111222 24455 48999999999999999999884332211 1112234567


Q ss_pred             eecCCCCCCC
Q psy9621         238 TIDKKPDRGG  247 (253)
Q Consensus       238 ~~~~~~~~~~  247 (253)
                      .+-..++.||
T Consensus       177 ~ivG~~n~GK  186 (435)
T PRK00093        177 AIIGRPNVGK  186 (435)
T ss_pred             EEECCCCCCH
Confidence            7666666664

>cd04163 Era Era subfamily

Probab=99.83  E-value=1.6e-19  Score=136.65  Aligned_cols=156  Identities=12%  Similarity=0.037  Sum_probs=101.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc--------cchhhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT--------ITTSYYR   80 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~   80 (253)
                      ..+|+++|++|+|||||++++.+............ ...............+.+|||||......        .....+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQT-TRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCc-eeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            56899999999999999999997654322111111 11111122233456799999999764332        2234578


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      .+|++++|+|++++.+.. ...+.+.+..   .+.|+++++||+|+..                                
T Consensus        82 ~~d~i~~v~d~~~~~~~~-~~~~~~~~~~---~~~~~iiv~nK~Dl~~--------------------------------  125 (168)
T cd04163          82 DVDLVLFVVDASEPIGEG-DEFILELLKK---SKTPVILVLNKIDLVK--------------------------------  125 (168)
T ss_pred             hCCEEEEEEECCCccCch-HHHHHHHHHH---hCCCEEEEEEchhccc--------------------------------
Confidence            899999999999872211 1223333322   2689999999999861                                


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHH
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                    ...     ...+....+....+ .+++++|++++.|++++++.|.+.
T Consensus       126 --------------~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         126 --------------DKE-----DLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             --------------cHH-----HHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence                          111     11222333444443 689999999999999999999764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01895 EngA2 EngA2 subfamily

Probab=99.83  E-value=2.1e-19  Score=137.01  Aligned_cols=156  Identities=20%  Similarity=0.165  Sum_probs=99.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc----------c-ch
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT----------I-TT   76 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~-~~   76 (253)
                      .++|+++|++|+|||||++++.+..... ...+....+.....+...+  ..+.+|||||......          . ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            5799999999999999999998765322 1122222222223333443  3478999999754311          0 12


Q ss_pred             hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCcc
Q psy9621          77 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEK  156 (253)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (253)
                      .++..+|++++|+|++++.+..... ++..+.   ..+.|+++++||+|+...                           
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~~~iiv~nK~Dl~~~---------------------------  128 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL---EEGKALVIVVNKWDLVEK---------------------------  128 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH---hcCCCEEEEEeccccCCc---------------------------
Confidence            3467899999999999987755432 222222   246899999999998621                           


Q ss_pred             chhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh----CCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         157 SFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY----GVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                         ...    ........+.+.+    ..+++++||+++.|+++++..+.+.
T Consensus       129 -------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         129 -------------------DSK----TMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             -------------------cHH----HHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence                               100    0001111222222    3689999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.83  E-value=1.5e-19  Score=157.49  Aligned_cols=165  Identities=19%  Similarity=0.118  Sum_probs=106.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc----------
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT----------   75 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------   75 (253)
                      +..+||+++|.+|+|||||+++|++..... ...+....+.....+..++  ..+.+|||||...+....          
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence            345899999999999999999999765321 1122222222223333443  368999999975543221          


Q ss_pred             -hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621          76 -TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN  154 (253)
Q Consensus        76 -~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (253)
                       ..+++.+|++|+|+|++++.+..... ++..+..   .+.|+++++||+|+....                        
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~------------------------  299 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDE------------------------  299 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCH------------------------
Confidence             23678999999999999887766543 3333322   478999999999985100                        


Q ss_pred             ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                       ..+++                      +.......+.....++++++||++|.|++++|+.+.+.....
T Consensus       300 -~~~~~----------------------~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       300 -KTREE----------------------FKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             -HHHHH----------------------HHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence             00000                      000111111111237999999999999999999998876654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.83  E-value=3.3e-19  Score=154.46  Aligned_cols=162  Identities=12%  Similarity=0.085  Sum_probs=106.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc----ccccchh---hhcCc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----FHTITTS---YYRGA   82 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~---~~~~~   82 (253)
                      ..|+|||.||||||||+++|++.+......|........-.+.+.  ...+.+|||||..+    ...+...   .+..+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~--~~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAG--DTRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEEC--CeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            579999999999999999999765432211111111221223333  35799999999642    2222222   35679


Q ss_pred             cEEEEEEeCCCh----hhHHHHHHHHHHHHHhc-----------ccccceeEEeeeeccccccccccccccccccceeeE
Q psy9621          83 MGIMLVYDITNE----KSFDNILKWLRNIDEHA-----------NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIM  147 (253)
Q Consensus        83 d~~ilv~d~~~~----~s~~~~~~~~~~i~~~~-----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (253)
                      +++|+|+|+++.    +.+..+..+..++..+.           ..+.|++||+||+|+..                   
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~d-------------------  298 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPD-------------------  298 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchh-------------------
Confidence            999999999853    35555555555554443           14689999999999851                   


Q ss_pred             EEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         148 LVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                                 ...     .. +......+..++++|++||+++.|+++|+.+|.+.+....
T Consensus       299 ---------------------------a~e-----l~-e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        299 ---------------------------ARE-----LA-EFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             ---------------------------hHH-----HH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence                                       111     10 1112222345789999999999999999999999886644

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.82  E-value=6.6e-20  Score=142.19  Aligned_cols=162  Identities=20%  Similarity=0.209  Sum_probs=106.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCc------------------ccCccceeeEEEEEeeCCeEEEEEEEeCCCcc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTT------------------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE   69 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   69 (253)
                      ..++|+++|+.++|||||+.+|+...-...                  .......+.....+........+.++||||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            468999999999999999999984331110                  01111222222222212456779999999999


Q ss_pred             cccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEE
Q psy9621          70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLV  149 (253)
Q Consensus        70 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  149 (253)
                      .|.......+..+|++|+|+|+.+.-.... ...+..+..   .++|+++++||+|+...                    
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~---~~~p~ivvlNK~D~~~~--------------------  137 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE---LGIPIIVVLNKMDLIEK--------------------  137 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH---TT-SEEEEEETCTSSHH--------------------
T ss_pred             ceeecccceecccccceeeeeccccccccc-ccccccccc---cccceEEeeeeccchhh--------------------
Confidence            998888888999999999999987643322 222233322   47899999999998611                    


Q ss_pred             EeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         150 YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY------GVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                             .+.+                      ...+....+.+..      .+|++++||++|.|+++|++.|.+.+.
T Consensus       138 -------~~~~----------------------~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  138 -------ELEE----------------------IIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             -------HHHH----------------------HHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             -------hHHH----------------------HHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence                   0000                      1111122333333      358999999999999999999988754

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK00089 era GTPase Era; Reviewed

Probab=99.82  E-value=3.8e-19  Score=147.26  Aligned_cols=160  Identities=13%  Similarity=0.107  Sum_probs=103.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc--------cchhhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT--------ITTSYYR   80 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~   80 (253)
                      .-.|+|+|++|||||||+|++.+...................+ ......++.+|||||......        .....+.
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i-~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGI-VTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEE-EEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            4579999999999999999999876543321111111111112 122346799999999754322        2233568


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      .+|++++|+|+++..+- .....+..+.   ..+.|+++|+||+|+.                                 
T Consensus        84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~---------------------------------  126 (292)
T PRK00089         84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLV---------------------------------  126 (292)
T ss_pred             cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCC---------------------------------
Confidence            89999999999883221 1122222222   2468999999999986                                 


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                   ....     ........+.+..+ .+++++||+++.|++++++.|...+...
T Consensus       127 -------------~~~~-----~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~  173 (292)
T PRK00089        127 -------------KDKE-----ELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEG  173 (292)
T ss_pred             -------------CCHH-----HHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence                         1111     11223344444444 6889999999999999999999887653

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.82  E-value=5e-19  Score=162.12  Aligned_cols=180  Identities=14%  Similarity=0.109  Sum_probs=114.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc--------ccccchhh
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER--------FHTITTSY   78 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~   78 (253)
                      ....+|+++|.+|||||||+++|.+...... .++.|++..............+.+|||||.+.        +......+
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv-~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVV-EDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            3457899999999999999999997654222 23334444333333222345689999999763        22333456


Q ss_pred             hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      +..+|++|+|+|+++..+... ..|...+..   .+.|+++|+||+|+.                               
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~-------------------------------  396 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQ-------------------------------  396 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccc-------------------------------
Confidence            789999999999976422111 234444433   579999999999975                               


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhccCCCC--CCCCCC
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKTSGRD--PLEAPD  235 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~--~~~~~~  235 (253)
                                     ...         ....++. .++. ..+++||++|.|++++|+.|...+........  ++....
T Consensus       397 ---------------~~~---------~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~  451 (712)
T PRK09518        397 ---------------ASE---------YDAAEFW-KLGLGEPYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLR  451 (712)
T ss_pred             ---------------cch---------hhHHHHH-HcCCCCeEEEECCCCCCchHHHHHHHHhcccccccccccCCCCCc
Confidence                           110         0111111 1232 45799999999999999999998865332110  122234


Q ss_pred             eEeecCCCCCCC
Q psy9621         236 RVTIDKKPDRGG  247 (253)
Q Consensus       236 ~~~~~~~~~~~~  247 (253)
                      ++.+-..++.||
T Consensus       452 kI~ivG~~nvGK  463 (712)
T PRK09518        452 RVALVGRPNVGK  463 (712)
T ss_pred             EEEEECCCCCCH
Confidence            666666666653

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.81  E-value=4.2e-19  Score=158.69  Aligned_cols=146  Identities=18%  Similarity=0.209  Sum_probs=105.6

Q ss_pred             cCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc------chhhh--cCccEEEE
Q psy9621          16 GDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI------TTSYY--RGAMGIML   87 (253)
Q Consensus        16 G~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~--~~~d~~il   87 (253)
                      |.+|||||||+|++.+..+.....|....+.....+.+++  ..+++|||||+..+...      .+.++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998776544455544455444555544  45899999999877553      23333  37899999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      |+|.++.+..   ..+..++   .+.++|+++++||+|+..                                       
T Consensus        79 VvDat~ler~---l~l~~ql---~~~~~PiIIVlNK~Dl~~---------------------------------------  113 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQL---LELGIPMILALNLVDEAE---------------------------------------  113 (591)
T ss_pred             EecCCcchhh---HHHHHHH---HhcCCCEEEEEehhHHHH---------------------------------------
Confidence            9999875421   2222222   235799999999999862                                       


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                             ...     +. ...+++++..+++++++||++|.|++++++.+.+..
T Consensus       114 -------~~~-----i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       114 -------KKG-----IR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             -------hCC-----Ch-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence                   111     11 235678888899999999999999999999998754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.81  E-value=1.4e-18  Score=147.93  Aligned_cols=162  Identities=13%  Similarity=0.150  Sum_probs=109.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc----ccch---hhhcCcc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH----TITT---SYYRGAM   83 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~~~---~~~~~~d   83 (253)
                      .|+|||.||||||||+|++++.+......|........-.+... ....+.++||||..+-.    .+..   ..+..++
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            69999999999999999999765432211111111111122222 23459999999975321    1222   2467899


Q ss_pred             EEEEEEeCC---ChhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          84 GIMLVYDIT---NEKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        84 ~~ilv~d~~---~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      ++++|+|++   +.+.++....|++++..+..  .+.|+++|+||+|+..                              
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~------------------------------  289 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD------------------------------  289 (390)
T ss_pred             EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC------------------------------
Confidence            999999998   45667777788888776542  4689999999999851                              


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                      ...     + .+...++.+..+  .+++.+||+++.|++++++.|.+.+....
T Consensus       290 ----------------~~e-----l-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~  336 (390)
T PRK12298        290 ----------------EEE-----A-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENP  336 (390)
T ss_pred             ----------------hHH-----H-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCc
Confidence                            111     1 122334444444  47899999999999999999999887643

>KOG0072|consensus

Probab=99.81  E-value=6.6e-20  Score=129.56  Aligned_cols=166  Identities=22%  Similarity=0.327  Sum_probs=124.8

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      .+...+|+++|--|+||||++.++.-+..... .|++|.+...    +..++.++++||..|+...+..|+.|+.+.+++
T Consensus        15 ~e~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~av   89 (182)
T KOG0072|consen   15 PEREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAV   89 (182)
T ss_pred             CccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccceE
Confidence            45788999999999999999999887666555 7787755542    334788999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHH-HHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNI-DEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      |+|+|.++++........+..+ ....-++..+++++||.|..+....                                
T Consensus        90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~--------------------------------  137 (182)
T KOG0072|consen   90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTR--------------------------------  137 (182)
T ss_pred             EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhH--------------------------------
Confidence            9999999988766665444443 3333366889999999998643111                                


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                     .+ +......+-.+..-+.+|++||.+|+|+|.++++|.+.+.++
T Consensus       138 ---------------~E-~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  138 ---------------SE-VLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             ---------------HH-HHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence                           00 111122222223337899999999999999999999987654

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.81  E-value=3.5e-19  Score=154.61  Aligned_cols=120  Identities=13%  Similarity=0.078  Sum_probs=80.2

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhc--CCCCCc---------------------------ccCccceeeEEEEEeeCCe
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSD--DAFNTT---------------------------FISTIGIDFKIKTVDLKGK   56 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~   56 (253)
                      ..+.++|+++|+.++|||||+.+|+.  +.....                           ....-|++.......+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            44579999999999999999999975  222110                           0011133333334445555


Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHH--HHHHhcccccceeEEeeeeccc
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR--NIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~--~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ...+.+|||||++.|.......+..+|++|+|+|+++.+++.. ..+..  .+.... ...|+++++||+|+.
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~-~~t~~~~~~~~~~-~~~~iIVviNK~Dl~  154 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQ-PQTREHAFLARTL-GINQLIVAINKMDSV  154 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccC-CchHHHHHHHHHc-CCCeEEEEEEChhcc
Confidence            6789999999999887666666789999999999998753311 11111  122222 235799999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.81  E-value=2.8e-19  Score=146.19  Aligned_cols=116  Identities=20%  Similarity=0.244  Sum_probs=79.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCccc------Cc----------cceeeEEEEEeeCCeEEEEEEEeCCCccccccc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFI------ST----------IGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI   74 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~------~~----------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   74 (253)
                      ||+++|++|+|||||+++++.........      .+          .+.+.......+......+.+|||||+..|...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            68999999999999999997432110000      00          011222222233334567999999999888777


Q ss_pred             chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621          75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE  130 (253)
Q Consensus        75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  130 (253)
                      ...+++.+|++++|+|+++.........| ..+.   ..++|+++++||+|..+..
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~---~~~~p~iivvNK~D~~~~~  132 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFAD---EAGIPRIIFINKMDRERAD  132 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCccCCCC
Confidence            88899999999999999987554433333 2222   2478999999999998763

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.80  E-value=1.4e-18  Score=128.64  Aligned_cols=155  Identities=19%  Similarity=0.270  Sum_probs=114.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCC--------cc----cCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT--------TF----ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI   74 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   74 (253)
                      -...||+|+|+-++||||++.++.......        .+    ..|+.++|......   ....++++|||||++|+.+
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~---~~~~v~LfgtPGq~RF~fm   84 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD---EDTGVHLFGTPGQERFKFM   84 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc---CcceEEEecCCCcHHHHHH
Confidence            346799999999999999999998765311        11    13445555543332   3356999999999999999


Q ss_pred             chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621          75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN  154 (253)
Q Consensus        75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (253)
                      +..+++++.++|+++|.+.+..+ .....+.-+ ... ..+|++|+.||.|+..+                         
T Consensus        85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~-~~~-~~ip~vVa~NK~DL~~a-------------------------  136 (187)
T COG2229          85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFL-TSR-NPIPVVVAINKQDLFDA-------------------------  136 (187)
T ss_pred             HHHHhCCcceEEEEEecCCCcch-HHHHHHHHH-hhc-cCCCEEEEeeccccCCC-------------------------
Confidence            99999999999999999999888 333333333 332 23999999999999743                         


Q ss_pred             ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH--hCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE--YGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                                  ...+..+++.+.  ..+++++.+|..++|..+.++.+...
T Consensus       137 ----------------------------~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         137 ----------------------------LPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ----------------------------CCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence                                        222333333333  36899999999999999999887765

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.80  E-value=9.3e-19  Score=151.97  Aligned_cols=120  Identities=13%  Similarity=0.075  Sum_probs=78.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCc-----------------------------ccCccceeeEEEEEeeCCeE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT-----------------------------FISTIGIDFKIKTVDLKGKK   57 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   57 (253)
                      .+.++|+++|++++|||||+++|+...-...                             ....-|++.......+....
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            3469999999999999999999983211100                             00122334443444455556


Q ss_pred             EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ..+.+|||||++.|.......+..+|++|+|+|++++.++.....+...+.... ...|+++++||+|+.
T Consensus        84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~  152 (425)
T PRK12317         84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAV  152 (425)
T ss_pred             eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccc
Confidence            789999999998887655556789999999999987322222222211222222 224689999999986

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.80  E-value=2.6e-18  Score=157.07  Aligned_cols=153  Identities=17%  Similarity=0.191  Sum_probs=112.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc----------chhh
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI----------TTSY   78 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~~   78 (253)
                      .++|+++|++|||||||+|++.+.+....  +..|.+...+...+......+.+|||||...+...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vg--n~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVG--NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            47999999999999999999997655332  23455555555555556678999999998766432          1123


Q ss_pred             h--cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCcc
Q psy9621          79 Y--RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEK  156 (253)
Q Consensus        79 ~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (253)
                      +  ..+|++|+|+|.++.+.-   ..+..++.+   .++|+++++||+|+.                             
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~-----------------------------  125 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIA-----------------------------  125 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhh-----------------------------
Confidence            2  479999999999886532   233334433   479999999999986                             


Q ss_pred             chhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         157 SFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                                       +...     + ....+++.+.+|+|++++||++|.|++++.+.+....
T Consensus       126 -----------------~~~~-----i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        126 -----------------EKQN-----I-RIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             -----------------hccC-----c-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence                             2221     2 2345677888999999999999999999999988765

>KOG0074|consensus

Probab=99.80  E-value=1.1e-18  Score=123.09  Aligned_cols=121  Identities=26%  Similarity=0.442  Sum_probs=99.5

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      ++....+||+++|..++|||||+..+.+.... ...||.|  |....+... +...+.+||.+|+...+..|+.|+.+.|
T Consensus        12 s~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~G--Fn~k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd   87 (185)
T KOG0074|consen   12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNG--FNTKKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVD   87 (185)
T ss_pred             CCCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCC--cceEEEeec-CcEEEEEEecCCccccchhhhhhhhccc
Confidence            46688999999999999999999999875443 3367777  444455444 4678999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeecccc
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAG  128 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~  128 (253)
                      ++|+|+|.++...|+.+..-+-++.... -..+|++|..||.|+..
T Consensus        88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt  133 (185)
T KOG0074|consen   88 GLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT  133 (185)
T ss_pred             eEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh
Confidence            9999999999999998886666655443 36799999999999863

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.79  E-value=2.2e-18  Score=150.41  Aligned_cols=164  Identities=18%  Similarity=0.133  Sum_probs=104.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc-----------
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI-----------   74 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------   74 (253)
                      ...++|+++|.+|+|||||++++++.... ....+  |.+.......+......+.+|||||.......           
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~--gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIA--GTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCC--CceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            35799999999999999999999975422 22222  22232222222223355889999996432211           


Q ss_pred             chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621          75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN  154 (253)
Q Consensus        75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (253)
                      ...+++.+|++|+|+|++++.+..... +...+..   .+.|+++++||+|+..+..                       
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~-----------------------  301 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT-----------------------  301 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH-----------------------
Confidence            123678999999999999887666543 2233322   4689999999999851100                       


Q ss_pred             ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                         ..+                      +.......+.....++++++||++|.|++++++.+.+.....
T Consensus       302 ---~~~----------------------~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        302 ---MEE----------------------FKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             ---HHH----------------------HHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence               000                      111111111112247999999999999999999988766543

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.79  E-value=2.4e-18  Score=152.89  Aligned_cols=111  Identities=19%  Similarity=0.142  Sum_probs=79.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCc----ccCccceeeEEEEEe------------eCCeEEEEEEEeCCCcccccc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTT----FISTIGIDFKIKTVD------------LKGKKIKLQIWDTAGQERFHT   73 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~----~~~~~~~~~~~~~~~------------~~~~~~~~~l~Dt~G~~~~~~   73 (253)
                      .-|+++|++++|||||+++|.+..+...    ..+++|..+......            ++.....+.+|||||++.|..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            3599999999999999999998766533    233444333221110            011112488999999999999


Q ss_pred             cchhhhcCccEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          74 ITTSYYRGAMGIMLVYDITN---EKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        74 ~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ++..+++.+|++++|||+++   +.+++.+..+    .   ..++|+++++||+|+.
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~---~~~vpiIVv~NK~Dl~  134 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGFKPQTQEALNIL----R---MYKTPFVVAANKIDRI  134 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----H---HcCCCEEEEEECCCcc
Confidence            99999999999999999987   4444443321    1   2478999999999986

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.79  E-value=9.7e-19  Score=142.32  Aligned_cols=208  Identities=16%  Similarity=0.152  Sum_probs=121.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCC--CCC-----------ccc---CccceeeEEEEEeeCCeEEEEEEEeCCCccccccc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDA--FNT-----------TFI---STIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI   74 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~--~~~-----------~~~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   74 (253)
                      ||+++|++|+|||||+++|+...  ...           ++.   ...+++.......+.....++.+|||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            68999999999999999997311  100           000   11233333333344445678999999999888888


Q ss_pred             chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc---cccccccccccceeeE----
Q psy9621          75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER---FHTITTSYYRGAMGIM----  147 (253)
Q Consensus        75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~----  147 (253)
                      +..+++.+|++|+|+|+++...-.. ...+..+.   ..++|+++++||+|+.+...   .+++.+.+-.......    
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~---~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pis  156 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQAD---RYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIG  156 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHH---HcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccc
Confidence            8889999999999999987532222 22223332   24689999999999976432   2333332211111000    


Q ss_pred             ----------------EEE-ec---------cCccchhhHHHHHHhhhhhcCCCchhhh-hh-----ccchhHHH-HHH-
Q psy9621         148 ----------------LVY-DI---------TNEKSFDNILKWLRNIDEHANEDPQVVN-SW-----VCKHRGEA-IAR-  193 (253)
Q Consensus       148 ----------------~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~-~~~-  193 (253)
                                      ..| +.         ...+..+...++++.+.+...+.++... ..     +..++..+ +.+ 
T Consensus       157 a~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~  236 (270)
T cd01886         157 EEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEIKAAIRKG  236 (270)
T ss_pred             cCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence                            111 10         0112233445555555444323222111 11     22222221 111 


Q ss_pred             ---HhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         194 ---EYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       194 ---~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                         ..-+|+|..||.++.|++.|++.+...+.
T Consensus       237 ~~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p  268 (270)
T cd01886         237 TIANKIVPVLCGSAFKNKGVQPLLDAVVDYLP  268 (270)
T ss_pred             HHcCcEEEEEeCcCCCCcCHHHHHHHHHHhcC
Confidence               12279999999999999999999988764

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd00880 Era_like Era (E

Probab=99.79  E-value=2.6e-18  Score=128.78  Aligned_cols=151  Identities=15%  Similarity=0.091  Sum_probs=100.4

Q ss_pred             EEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc-------hhhhcCccEE
Q psy9621          14 LIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT-------TSYYRGAMGI   85 (253)
Q Consensus        14 vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~~d~~   85 (253)
                      ++|++|+|||||++++.+.... ....+.............. ....+.+|||||...+....       ..+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999876544 2212211112222222222 14579999999987664333       3478899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      ++|+|.++..+..... +.....   ..+.|+++++||+|+...                                    
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~------------------------------------  119 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPE------------------------------------  119 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCCh------------------------------------
Confidence            9999999887666654 333332   257999999999998621                                    


Q ss_pred             HhhhhhcCCCchhhhhhccc---hhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         166 RNIDEHANEDPQVVNSWVCK---HRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                ..     ...   ..........+.+++++||+++.|++++++.+.+.
T Consensus       120 ----------~~-----~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         120 ----------EE-----EEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             ----------hh-----HHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence                      11     000   01122223345899999999999999999998764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.79  E-value=7.8e-18  Score=134.50  Aligned_cols=92  Identities=20%  Similarity=0.206  Sum_probs=59.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc----c---cchhhhcCcc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH----T---ITTSYYRGAM   83 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~---~~~~~~~~~d   83 (253)
                      +|+++|++|+|||||+++|.+........+....+...-.+.+.  ...+++|||||..+..    .   ....+++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            78999999999999999999765322111111112222233333  4579999999975432    1   1234678999


Q ss_pred             EEEEEEeCCChh-hHHHHHHHH
Q psy9621          84 GIMLVYDITNEK-SFDNILKWL  104 (253)
Q Consensus        84 ~~ilv~d~~~~~-s~~~~~~~~  104 (253)
                      ++++|+|++++. ....+...+
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l  101 (233)
T cd01896          80 LILMVLDATKPEGHREILEREL  101 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHH
Confidence            999999998765 344443333

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK10218 GTP-binding protein; Provisional

Probab=99.79  E-value=4.2e-18  Score=151.88  Aligned_cols=116  Identities=16%  Similarity=0.176  Sum_probs=89.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc--CCCCCcc------------cCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD--DAFNTTF------------ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT   73 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   73 (253)
                      ...||+++|+.++|||||+++|+.  +.+....            .++.|+++......+..+...+.+|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            468999999999999999999986  3332221            23456677766667777788999999999999999


Q ss_pred             cchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          74 ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .+..+++.+|++|+|+|+++...... ..++..+..   .++|.++++||+|+.
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~---~gip~IVviNKiD~~  133 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA---YGLKPIVVINKVDRP  133 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH---cCCCEEEEEECcCCC
Confidence            99999999999999999987532222 233333322   478999999999986

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.78  E-value=2.1e-18  Score=153.88  Aligned_cols=168  Identities=15%  Similarity=0.173  Sum_probs=113.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc--CCCCCcc------------cCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD--DAFNTTF------------ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT   75 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   75 (253)
                      .||+++|+.++|||||+.+|+.  +.+....            ....|++.......+.++...+.+|||||+..|....
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            5899999999999999999985  3222211            1123455555555555566889999999999998888


Q ss_pred             hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621          76 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE  155 (253)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (253)
                      ..+++.+|++++|+|+++.. ......|+..+..   .++|+++++||+|+..++                         
T Consensus        82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~-------------------------  132 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSAR-------------------------  132 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcC-------------------------
Confidence            99999999999999998642 3333455555544   468999999999986221                         


Q ss_pred             cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCC----------CHHHHHHHHHHHHHhc
Q psy9621         156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANI----------NIEKAFIELATAIYDK  224 (253)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~  224 (253)
                        +.++..   ++.+.+...        ..     .-++..+|++++||++|.          |++.+|+.|...+..-
T Consensus       133 --~~~v~~---ei~~l~~~~--------g~-----~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       133 --PDEVVD---EVFDLFAEL--------GA-----DDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             --HHHHHH---HHHHHHHhh--------cc-----ccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence              111111   000000000        00     002345799999999996          7999999999887643

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.78  E-value=2.9e-18  Score=144.02  Aligned_cols=175  Identities=14%  Similarity=0.130  Sum_probs=118.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCcccee--eEEEEEeeCCeEEEEEEEeCCCccccc---------ccchhh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGID--FKIKTVDLKGKKIKLQIWDTAGQERFH---------TITTSY   78 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~   78 (253)
                      ..|+++|.||||||||+|||.+.+..-. ..+.|++  .......+.+  ..+.++||+|.+...         ......
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV-~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A   80 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV-SDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIA   80 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEe-ecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence            5799999999999999999998765433 1222332  2223333443  349999999976432         223557


Q ss_pred             hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      +..+|++|||+|....-+  ...+.+..++.  ..+.|+++|+||+|...                              
T Consensus        81 i~eADvilfvVD~~~Git--~~D~~ia~~Lr--~~~kpviLvvNK~D~~~------------------------------  126 (444)
T COG1160          81 IEEADVILFVVDGREGIT--PADEEIAKILR--RSKKPVILVVNKIDNLK------------------------------  126 (444)
T ss_pred             HHhCCEEEEEEeCCCCCC--HHHHHHHHHHH--hcCCCEEEEEEcccCch------------------------------
Confidence            889999999999865322  22222222233  25799999999999641                              


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCC--CCCC
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKTSGRDPL--EAPD  235 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~--~~~~  235 (253)
                                               ......++ -.+| -..+.+||..|.|+++|++.+...+. ...+....  ..+.
T Consensus       127 -------------------------~e~~~~ef-yslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~-~~e~~~~~~~~~~i  179 (444)
T COG1160         127 -------------------------AEELAYEF-YSLGFGEPVPISAEHGRGIGDLLDAVLELLP-PDEEEEEEEETDPI  179 (444)
T ss_pred             -------------------------hhhhHHHH-HhcCCCCceEeehhhccCHHHHHHHHHhhcC-CcccccccccCCce
Confidence                                     11112222 2445 37899999999999999999999985 33332222  3678


Q ss_pred             eEeecCCCCCCCC
Q psy9621         236 RVTIDKKPDRGGM  248 (253)
Q Consensus       236 ~~~~~~~~~~~~~  248 (253)
                      ++.+--+||.+|+
T Consensus       180 kiaiiGrPNvGKS  192 (444)
T COG1160         180 KIAIIGRPNVGKS  192 (444)
T ss_pred             EEEEEeCCCCCch
Confidence            9999999999865

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.78  E-value=4.9e-18  Score=155.65  Aligned_cols=160  Identities=16%  Similarity=0.192  Sum_probs=107.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc----------ccccc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----------FHTIT   75 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~   75 (253)
                      +..+||+++|.+|||||||+++|++.... ....+....+.....+.+.+.  .+.+|||||..+          |..++
T Consensus       448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r  525 (712)
T PRK09518        448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLR  525 (712)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHH
Confidence            34689999999999999999999987642 122222223443344555554  467999999632          11111


Q ss_pred             -hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621          76 -TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN  154 (253)
Q Consensus        76 -~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (253)
                       ..+++.+|++|+|+|+++..+..... ++..+..   .+.|+++|+||+|+...                         
T Consensus       526 ~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~-------------------------  576 (712)
T PRK09518        526 TQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDE-------------------------  576 (712)
T ss_pred             HHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCCh-------------------------
Confidence             23468899999999999988777754 3333332   47899999999998511                         


Q ss_pred             ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHH-HHHHHh----CCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE-AIAREY----GVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                           ..       ....+ .+....    ..+++++||++|.|++++|+.+.+.+....
T Consensus       577 ---------------------~~-------~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~  624 (712)
T PRK09518        577 ---------------------FR-------RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWD  624 (712)
T ss_pred             ---------------------hH-------HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence                                 00       00011 111111    257799999999999999999999887643

>PRK13351 elongation factor G; Reviewed

Probab=99.77  E-value=3.1e-18  Score=156.81  Aligned_cols=124  Identities=17%  Similarity=0.221  Sum_probs=88.7

Q ss_pred             ccccCceeEEEEEcCCCCcHHHHHHHhhcCCC-------------CCcccC---ccceeeEEEEEeeCCeEEEEEEEeCC
Q psy9621           3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAF-------------NTTFIS---TIGIDFKIKTVDLKGKKIKLQIWDTA   66 (253)
Q Consensus         3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~-------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~Dt~   66 (253)
                      .++.+...||+|+|+.|+|||||+++|+...-             ..++.+   ..+.+.......+......+.+||||
T Consensus         2 ~~~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtP   81 (687)
T PRK13351          2 EMPLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTP   81 (687)
T ss_pred             CCccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECC
Confidence            45667789999999999999999999974211             000000   11222222222333456789999999


Q ss_pred             CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621          67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE  130 (253)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  130 (253)
                      |+.+|...+..+++.+|++|+|+|+++.........| ..+..   .++|+++++||+|+.+.+
T Consensus        82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~~~  141 (687)
T PRK13351         82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVGAD  141 (687)
T ss_pred             CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCCCC
Confidence            9999988889999999999999999987766654444 22222   479999999999998764

>COG1159 Era GTPase [General function prediction only]

Probab=99.77  E-value=1e-17  Score=133.63  Aligned_cols=162  Identities=12%  Similarity=0.031  Sum_probs=107.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc--------chhhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI--------TTSYYR   80 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~   80 (253)
                      .--|+++|.||||||||+|++.+.+....++.... +.....--+..++.++.++||||..+-...        ....+.
T Consensus         6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QT-TR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~   84 (298)
T COG1159           6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQT-TRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK   84 (298)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcch-hhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence            45799999999999999999999877654332221 222222223335788999999997543322        234568


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      .+|+++||+|++....- .....++.+..   .+.|+++++||+|...                                
T Consensus        85 dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~--------------------------------  128 (298)
T COG1159          85 DVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVK--------------------------------  128 (298)
T ss_pred             cCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCC--------------------------------
Confidence            99999999999874332 11233333322   4689999999999872                                


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                    +..     ........+..... ..++++||++|.|++.|.+.+...+.+...
T Consensus       129 --------------~~~-----~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~  176 (298)
T COG1159         129 --------------PKT-----VLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPW  176 (298)
T ss_pred             --------------cHH-----HHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCC
Confidence                          221     11112222222333 488999999999999999999888776544

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.76  E-value=2.4e-18  Score=151.63  Aligned_cols=122  Identities=16%  Similarity=0.166  Sum_probs=86.2

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhc--CCCC---------------Cc---ccCccceeeEEEEEeeCCeEEEEEEEeC
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSD--DAFN---------------TT---FISTIGIDFKIKTVDLKGKKIKLQIWDT   65 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~--~~~~---------------~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt   65 (253)
                      .+...+|+++|++|+|||||+++|+.  +...               .+   .....|+++......+..+...+.+|||
T Consensus         7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT   86 (526)
T PRK00741          7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT   86 (526)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence            35678999999999999999999973  1110               00   0011244444444555556688999999


Q ss_pred             CCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc
Q psy9621          66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER  131 (253)
Q Consensus        66 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~  131 (253)
                      ||+..|......+++.+|++|+|+|+++..... ...++....   ..++|+++++||+|+.+...
T Consensus        87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~---~~~iPiiv~iNK~D~~~a~~  148 (526)
T PRK00741         87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCR---LRDTPIFTFINKLDRDGREP  148 (526)
T ss_pred             CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHH---hcCCCEEEEEECCcccccCH
Confidence            999998887777899999999999998753221 223333322   25799999999999987654

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.76  E-value=1.4e-17  Score=126.17  Aligned_cols=152  Identities=14%  Similarity=0.204  Sum_probs=98.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc----------ccccchhhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----------FHTITTSYYR   80 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~   80 (253)
                      .|+++|++|+|||||++.+.+..+.....++.+.+........+.   .+.+|||||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            389999999999999999996666555556665554443343332   799999999533          3333344444


Q ss_pred             ---CccEEEEEEeCCChhh--HHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621          81 ---GAMGIMLVYDITNEKS--FDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE  155 (253)
Q Consensus        81 ---~~d~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (253)
                         ..+++++++|.+...+  ...+..|+..      .+.|+++++||+|+...                          
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~--------------------------  125 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKK--------------------------  125 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCCh--------------------------
Confidence               4568889999876532  2223344333      25899999999998511                          


Q ss_pred             cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH--HhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR--EYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                          ....   ..........+  ....+++++||+++.|++++++.|.+.
T Consensus       126 --------------------~~~~---~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         126 --------------------SELA---KALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             --------------------HHHH---HHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence                                1000   11111222222  234689999999999999999999865

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.76  E-value=6e-18  Score=133.22  Aligned_cols=114  Identities=18%  Similarity=0.103  Sum_probs=71.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcc--------------------------c---CccceeeEEEEEeeCCeEEEEE
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTF--------------------------I---STIGIDFKIKTVDLKGKKIKLQ   61 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~--------------------------~---~~~~~~~~~~~~~~~~~~~~~~   61 (253)
                      ||+++|++|+|||||+++|+...-....                          .   ..-|++.......+......+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            6899999999999999999742211100                          0   0012222222223333455789


Q ss_pred             EEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        62 l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      +|||||+.+|.......++.+|++|+|+|++++..-.. ..... +.... ...++++++||+|+.
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~-~~~~~-~~~~iIvviNK~D~~  143 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSY-ILSLL-GIRHVVVAVNKMDLV  143 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHH-HHHHc-CCCcEEEEEEchhcc
Confidence            99999998876656667889999999999987532221 11111 12221 223577789999985

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.75  E-value=1.3e-17  Score=152.52  Aligned_cols=126  Identities=17%  Similarity=0.156  Sum_probs=88.5

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCC----ccc------------CccceeeEEEEEeeCCeEEEEEEEe
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNT----TFI------------STIGIDFKIKTVDLKGKKIKLQIWD   64 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~l~D   64 (253)
                      |-..+.+...||+++|++++|||||+++|+...-..    ...            ...|++.......+.....++.+||
T Consensus         2 ~~~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liD   81 (689)
T TIGR00484         2 ARTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIID   81 (689)
T ss_pred             CCcCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEE
Confidence            455677788999999999999999999997321100    000            0113333333333334457899999


Q ss_pred             CCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621          65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE  130 (253)
Q Consensus        65 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  130 (253)
                      |||+..+......+++.+|++|+|+|+++.........| ..+..   .++|+++++||+|+.++.
T Consensus        82 TPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~~~  143 (689)
T TIGR00484        82 TPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR---YEVPRIAFVNKMDKTGAN  143 (689)
T ss_pred             CCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCCEEEEEECCCCCCCC
Confidence            999998888888899999999999999876544433222 22222   468999999999998654

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.75  E-value=2.6e-17  Score=141.74  Aligned_cols=185  Identities=15%  Similarity=0.151  Sum_probs=107.2

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCC---cccC--ccceeeEEEEEe----------------eC--C--
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNT---TFIS--TIGIDFKIKTVD----------------LK--G--   55 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~---~~~~--~~~~~~~~~~~~----------------~~--~--   55 (253)
                      ||. ...+.++|+++|+.++|||||+.+|.+...+.   +..+  |+...+....+.                .+  +  
T Consensus         2 ~~~-~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (411)
T PRK04000          2 MWE-KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSE   80 (411)
T ss_pred             Ccc-cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccc
Confidence            444 34557999999999999999999986421111   1011  111111100100                00  0  


Q ss_pred             --eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeeecccccccc
Q psy9621          56 --KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERF  132 (253)
Q Consensus        56 --~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~  132 (253)
                        ....+.+|||||++.|..........+|++++|+|++++. .-..... +..+.. . ...|+++++||+|+...   
T Consensus        81 ~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~-~-~i~~iiVVlNK~Dl~~~---  154 (411)
T PRK04000         81 TELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDI-I-GIKNIVIVQNKIDLVSK---  154 (411)
T ss_pred             cccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHH-c-CCCcEEEEEEeeccccc---
Confidence              1357899999999887655445556789999999999643 1111111 112211 1 22468999999998621   


Q ss_pred             ccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH---hCCceEEeeccCCCC
Q psy9621         133 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE---YGVRFMETSAKANIN  209 (253)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~g  209 (253)
                                                                 ....   ...++...+.+.   .+++++++||++|.|
T Consensus       155 -------------------------------------------~~~~---~~~~~i~~~l~~~~~~~~~ii~vSA~~g~g  188 (411)
T PRK04000        155 -------------------------------------------ERAL---ENYEQIKEFVKGTVAENAPIIPVSALHKVN  188 (411)
T ss_pred             -------------------------------------------hhHH---HHHHHHHHHhccccCCCCeEEEEECCCCcC
Confidence                                                       1000   011122233332   247899999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCCeEeecC
Q psy9621         210 IEKAFIELATAIYDKTSGRDPLEAPDRVTIDK  241 (253)
Q Consensus       210 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  241 (253)
                      +++|++.|...+...   ....+.+-++.|..
T Consensus       189 I~~L~~~L~~~l~~~---~~~~~~~~r~~I~~  217 (411)
T PRK04000        189 IDALIEAIEEEIPTP---ERDLDKPPRMYVAR  217 (411)
T ss_pred             HHHHHHHHHHhCCCC---CCCCCCCceEEEEe
Confidence            999999998866432   22223444555553

>TIGR00503 prfC peptide chain release factor 3

Probab=99.75  E-value=7.2e-18  Score=148.68  Aligned_cols=122  Identities=16%  Similarity=0.170  Sum_probs=86.0

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhc--CCCCC---------------c---ccCccceeeEEEEEeeCCeEEEEEEEe
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSD--DAFNT---------------T---FISTIGIDFKIKTVDLKGKKIKLQIWD   64 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~--~~~~~---------------~---~~~~~~~~~~~~~~~~~~~~~~~~l~D   64 (253)
                      ......+|+++|++++|||||+++|+.  +....               .   .....|+++......+..+...+.+||
T Consensus         7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD   86 (527)
T TIGR00503         7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD   86 (527)
T ss_pred             hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence            345678999999999999999999863  11100               0   011224555555566666778899999


Q ss_pred             CCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621          65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE  130 (253)
Q Consensus        65 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  130 (253)
                      |||+..|......+++.+|++|+|+|+++... .....+++.. ..  .++|+++++||+|+.+..
T Consensus        87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~~--~~~PiivviNKiD~~~~~  148 (527)
T TIGR00503        87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVT-RL--RDTPIFTFMNKLDRDIRD  148 (527)
T ss_pred             CCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHH-Hh--cCCCEEEEEECccccCCC
Confidence            99998887777778899999999999987421 1122333322 22  579999999999997543

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.75  E-value=1.9e-17  Score=142.68  Aligned_cols=165  Identities=15%  Similarity=0.103  Sum_probs=102.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCC---cccC--ccceeeEEEE------------Eee----CC------eEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT---TFIS--TIGIDFKIKT------------VDL----KG------KKIK   59 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~---~~~~--~~~~~~~~~~------------~~~----~~------~~~~   59 (253)
                      +..++|+++|+.++|||||+++|.......   ....  |+...+....            .+.    ++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            467899999999999999999996532211   1000  1111111000            000    11      1357


Q ss_pred             EEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccc
Q psy9621          60 LQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSY  139 (253)
Q Consensus        60 ~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~  139 (253)
                      +.+|||||++.|..........+|++|+|+|+++........+.+..+.. . ...|+++++||+|+.....        
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~-gi~~iIVvvNK~Dl~~~~~--------  151 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-I-GIKNIVIVQNKIDLVSKEK--------  151 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-c-CCCeEEEEEEccccCCHHH--------
Confidence            89999999999977777777889999999999864311111222222222 1 2346899999999862100        


Q ss_pred             cccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh---CCceEEeeccCCCCHHHHHHH
Q psy9621         140 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY---GVRFMETSAKANINIEKAFIE  216 (253)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~  216 (253)
                                           ..                    ...++..++.+..   +++++++||++|.|+++|++.
T Consensus       152 ---------------------~~--------------------~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~  190 (406)
T TIGR03680       152 ---------------------AL--------------------ENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEA  190 (406)
T ss_pred             ---------------------HH--------------------HHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHH
Confidence                                 00                    0011222222222   578999999999999999999


Q ss_pred             HHHHHH
Q psy9621         217 LATAIY  222 (253)
Q Consensus       217 l~~~~~  222 (253)
                      |...+.
T Consensus       191 L~~~l~  196 (406)
T TIGR03680       191 IEKFIP  196 (406)
T ss_pred             HHHhCC
Confidence            988654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04167 Snu114p Snu114p subfamily

Probab=99.74  E-value=1.9e-17  Score=130.88  Aligned_cols=113  Identities=23%  Similarity=0.294  Sum_probs=80.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcc-----------------cCccceeeEEEEEee-----CCeEEEEEEEeCCCc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTF-----------------ISTIGIDFKIKTVDL-----KGKKIKLQIWDTAGQ   68 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~   68 (253)
                      +|+++|+.|+|||||+++|+........                 ....++++......+     ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            7999999999999999999864332210                 011223332222222     345688999999999


Q ss_pred             ccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ..|......++..+|++|+|+|+++..+... ..++.....   .++|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9998888888999999999999987765543 334333322   358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.74  E-value=7.1e-17  Score=144.80  Aligned_cols=170  Identities=17%  Similarity=0.181  Sum_probs=108.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCC---CCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDA---FNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      -|+++|+.++|||||+++|.+..   +.....+.+.++.....+...+ ...+.+|||||++.|.......+.++|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            58899999999999999998532   3333323333333322332222 2348999999999987666667889999999


Q ss_pred             EEeCCCh---hhHHHHHHHHHHHHHhcccccc-eeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          88 VYDITNE---KSFDNILKWLRNIDEHANEDVE-KMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        88 v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      |+|+++.   .+.+.+    ..+ ..  .++| +++|+||+|+..+..                          ++    
T Consensus        81 VVda~eg~~~qT~ehl----~il-~~--lgi~~iIVVlNKiDlv~~~~--------------------------~~----  123 (614)
T PRK10512         81 VVACDDGVMAQTREHL----AIL-QL--TGNPMLTVALTKADRVDEAR--------------------------IA----  123 (614)
T ss_pred             EEECCCCCcHHHHHHH----HHH-HH--cCCCeEEEEEECCccCCHHH--------------------------HH----
Confidence            9999873   222222    222 22  2466 579999999862100                          00    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhC---CceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeec
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG---VRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTID  240 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  240 (253)
                                         ...++..++.+..+   .+++++||++|.|+++|++.|.........    ...+-++.|+
T Consensus       124 -------------------~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~~~~----~~~~~rl~Id  180 (614)
T PRK10512        124 -------------------EVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPEREHA----AQHRFRLAID  180 (614)
T ss_pred             -------------------HHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhccccC----cCCCceEEEE
Confidence                               11223344444443   689999999999999999999876544322    2334455555


Q ss_pred             C
Q psy9621         241 K  241 (253)
Q Consensus       241 ~  241 (253)
                      +
T Consensus       181 ~  181 (614)
T PRK10512        181 R  181 (614)
T ss_pred             E
Confidence            4

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.73  E-value=6.9e-17  Score=144.16  Aligned_cols=112  Identities=21%  Similarity=0.177  Sum_probs=78.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCc----ccCccceeeEEEEEee--CCeE----------EEEEEEeCCCccccc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTT----FISTIGIDFKIKTVDL--KGKK----------IKLQIWDTAGQERFH   72 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~----------~~~~l~Dt~G~~~~~   72 (253)
                      ...|+++|++++|||||+++|.+......    ..+++|.++.+.....  .+..          ..+.+|||||++.|.
T Consensus         6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~   85 (586)
T PRK04004          6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT   85 (586)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence            34799999999999999999986544322    2234443332221100  0111          127899999999999


Q ss_pred             ccchhhhcCccEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          73 TITTSYYRGAMGIMLVYDITN---EKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        73 ~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .++...+..+|++|+|+|+++   +.+++.+..+    .   ..++|+++++||+|+.
T Consensus        86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~---~~~vpiIvviNK~D~~  136 (586)
T PRK04004         86 NLRKRGGALADIAILVVDINEGFQPQTIEAINIL----K---RRKTPFVVAANKIDRI  136 (586)
T ss_pred             HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----H---HcCCCEEEEEECcCCc
Confidence            888888899999999999997   5555544321    1   1478999999999985

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.73  E-value=9.8e-17  Score=124.61  Aligned_cols=115  Identities=15%  Similarity=0.089  Sum_probs=78.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCC-------CC----c---ccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAF-------NT----T---FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI   74 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~-------~~----~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   74 (253)
                      .++|+++|+.++|||||+++|+....       ..    .   ....-|++.......+..+..++.++||||+..|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            58999999999999999999975310       00    0   0012244444444445555667899999999888776


Q ss_pred             chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                      ....+..+|++++|+|++..-.-. ....+..+..   .++| ++++.||+|+.
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~---~~~~~iIvviNK~D~~  131 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ---VGVPYIVVFLNKADMV  131 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCcEEEEEeCCCCC
Confidence            777788999999999997643221 1222233322   3576 77889999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.72  E-value=8.4e-17  Score=135.64  Aligned_cols=156  Identities=15%  Similarity=0.154  Sum_probs=107.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc--------hhh
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT--------TSY   78 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~   78 (253)
                      ..-+|++++|.||||||||+|.|++...... ..-.|.+.......++-+.+.+.+.||+|..+-....        ...
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIV-TdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIV-TDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEe-cCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            4568999999999999999999997654332 1122333333333334344779999999976544333        345


Q ss_pred             hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      +..+|.+++|+|.+.+.+-+.. ..+.    ....+.|+++|.||.|+..+                             
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~DL~~~-----------------------------  339 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKADLVSK-----------------------------  339 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEechhcccc-----------------------------
Confidence            7899999999999986322221 1112    33367999999999999721                             


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                       ..          ...+....+.+++.+|+++|+|++.|.+.|.+.+...
T Consensus       340 -----------------~~----------~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         340 -----------------IE----------LESEKLANGDAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             -----------------cc----------cchhhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence                             11          1111112235789999999999999999999988776

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.71  E-value=8.9e-17  Score=116.52  Aligned_cols=135  Identities=23%  Similarity=0.244  Sum_probs=91.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc----cccccchhhhcCccEEE
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE----RFHTITTSYYRGAMGIM   86 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~~~~d~~i   86 (253)
                      ||+++|+.|+|||||+++|.+...  .+..|..+.|.            =.++||||.-    .|....-.....+|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999997543  22333332222            1347999941    11111122345899999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      +|.|.+++.+.-.     ..+.+.  .+.|++-|.||+|+.                                       
T Consensus        69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~---------------------------------------  102 (143)
T PF10662_consen   69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLP---------------------------------------  102 (143)
T ss_pred             EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCc---------------------------------------
Confidence            9999998753211     111111  368999999999996                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHH
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELA  218 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~  218 (253)
                             ...      ...+..+++.+..|+ ..|++|+.+|+|+++|.+.|-
T Consensus       103 -------~~~------~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  103 -------SDD------ANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             -------cch------hhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence                   111      233455667777775 679999999999999998874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.71  E-value=3.6e-17  Score=129.78  Aligned_cols=114  Identities=14%  Similarity=0.102  Sum_probs=73.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCC--CCC------------------------cc---cCccceeeEEEEEeeCCeEEEEE
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDA--FNT------------------------TF---ISTIGIDFKIKTVDLKGKKIKLQ   61 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~--~~~------------------------~~---~~~~~~~~~~~~~~~~~~~~~~~   61 (253)
                      +|+++|+.++|||||+.+|+...  ...                        ..   ...-|++.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            68999999999999999986321  000                        00   01113333333333444557799


Q ss_pred             EEeCCCcccccccchhhhcCccEEEEEEeCCChh-------hHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK-------SFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        62 l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-------s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      +|||||+..|.......+..+|++|+|+|+++..       ..+....+ ... ... ...|+++++||+|+.
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~-~~~-~~~~iiivvNK~Dl~  150 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLA-RTL-GVKQLIVAVNKMDDV  150 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHH-HHc-CCCeEEEEEEccccc
Confidence            9999999877766666778899999999998852       11111222 112 221 236899999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=2.3e-16  Score=134.72  Aligned_cols=185  Identities=18%  Similarity=0.165  Sum_probs=122.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .=|+++|+-.-|||||+..+........-...+.-......+..+ +....+.++|||||+.|..++..-..-+|++|+|
T Consensus         6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV   85 (509)
T COG0532           6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV   85 (509)
T ss_pred             CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence            358999999999999999999876655433322222223334333 1346799999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      +++++.--    .+..+.+......+.|++++.||+|....                           .+...   ..++
T Consensus        86 Va~dDGv~----pQTiEAI~hak~a~vP~iVAiNKiDk~~~---------------------------np~~v---~~el  131 (509)
T COG0532          86 VAADDGVM----PQTIEAINHAKAAGVPIVVAINKIDKPEA---------------------------NPDKV---KQEL  131 (509)
T ss_pred             EEccCCcc----hhHHHHHHHHHHCCCCEEEEEecccCCCC---------------------------CHHHH---HHHH
Confidence            99998431    12233344444468999999999998621                           00110   0110


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeecCCCCC
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDR  245 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (253)
                      .++                 --..+.++  +.++++||++|+|+++|+..+.......+..-.+.....-.-++.+...
T Consensus       132 ~~~-----------------gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dk  193 (509)
T COG0532         132 QEY-----------------GLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDK  193 (509)
T ss_pred             HHc-----------------CCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEecc
Confidence            000                 11122333  7899999999999999999988777666555555444444444444333

>PRK12736 elongation factor Tu; Reviewed

Probab=99.70  E-value=7.6e-16  Score=132.25  Aligned_cols=118  Identities=14%  Similarity=0.077  Sum_probs=78.6

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCC--------------cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNT--------------TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF   71 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   71 (253)
                      ..+.+||+++|+.++|||||+++|++.....              .....-|++.......+......+.+|||||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            3457899999999999999999997521100              00012244444444455555567899999999888


Q ss_pred             cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                      .......+..+|++++|+|++....-.. ...+..+..   .++| +++++||+|+.
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~---~g~~~~IvviNK~D~~  141 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ---VGVPYLVVFLNKVDLV  141 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCEEEEEEEecCCc
Confidence            6655566678999999999986422111 222222222   3678 67889999986

>KOG1707|consensus

Probab=99.70  E-value=6.2e-17  Score=138.64  Aligned_cols=125  Identities=24%  Similarity=0.366  Sum_probs=100.7

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR   80 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (253)
                      |..-..-..+||+++|+.|+|||||+..+....|++...+...  ......++.-..+...+.||+..++-......-++
T Consensus         1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~Eir   78 (625)
T KOG1707|consen    1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIR   78 (625)
T ss_pred             CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHh
Confidence            4455566789999999999999999999999998887554432  21122334444566899999977766666677789


Q ss_pred             CccEEEEEEeCCChhhHHHHH-HHHHHHHHhcc--cccceeEEeeeeccc
Q psy9621          81 GAMGIMLVYDITNEKSFDNIL-KWLRNIDEHAN--EDVEKMILGKTKDTA  127 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~--~~~p~iiv~nK~D~~  127 (253)
                      .+|++.++|+++++.+++.+. +|+..+++..+  ..+|+|+||||+|..
T Consensus        79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~  128 (625)
T KOG1707|consen   79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNG  128 (625)
T ss_pred             hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCc
Confidence            999999999999999999997 89999988864  579999999999987

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.69  E-value=6.7e-16  Score=132.74  Aligned_cols=119  Identities=13%  Similarity=0.071  Sum_probs=78.8

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCC-------C----CCc---ccCccceeeEEEEEeeCCeEEEEEEEeCCCccc
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDA-------F----NTT---FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER   70 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~-------~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   70 (253)
                      ...+.++|+++|+.++|||||+++|++..       +    ...   ....-|++.....+.+......+.+|||||+++
T Consensus         8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~   87 (394)
T TIGR00485         8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence            35668999999999999999999997320       0    000   001123444444555555567799999999998


Q ss_pred             ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccccccee-EEeeeeccc
Q psy9621          71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKM-ILGKTKDTA  127 (253)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~D~~  127 (253)
                      |..........+|++++|+|++....-.. .+.+..+..   .++|.+ +++||+|+.
T Consensus        88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~---~gi~~iIvvvNK~Dl~  141 (394)
T TIGR00485        88 YVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMV  141 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEEecccC
Confidence            86655556678899999999987422221 122222222   367766 689999986

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.69  E-value=7.3e-16  Score=132.44  Aligned_cols=118  Identities=13%  Similarity=0.067  Sum_probs=78.8

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcC-------CCCC-------cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDD-------AFNT-------TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF   71 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   71 (253)
                      ..+.++|+++|++++|||||+++|++.       .+..       .....-|++.......+.....++.++||||++.|
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence            456789999999999999999999852       1100       00112244444444445545567899999999888


Q ss_pred             cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccccccee-EEeeeeccc
Q psy9621          72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKM-ILGKTKDTA  127 (253)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~D~~  127 (253)
                      .......+..+|++++|+|++....-.. .+.+..+.   ..++|.+ +++||+|+.
T Consensus        89 ~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~---~~gi~~iivvvNK~Dl~  141 (396)
T PRK12735         89 VKNMITGAAQMDGAILVVSAADGPMPQT-REHILLAR---QVGVPYIVVFLNKCDMV  141 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHH---HcCCCeEEEEEEecCCc
Confidence            6666667789999999999987432111 22222222   2468866 579999986

>PRK00007 elongation factor G; Reviewed

Probab=99.69  E-value=2.4e-16  Score=144.10  Aligned_cols=126  Identities=17%  Similarity=0.197  Sum_probs=85.8

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhc--CCCCC--ccc------------CccceeeEEEEEeeCCeEEEEEEEe
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSD--DAFNT--TFI------------STIGIDFKIKTVDLKGKKIKLQIWD   64 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~--~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~l~D   64 (253)
                      |-.++.+...||+++|++++|||||+++|+.  +....  ...            ..-|++.......+......+.++|
T Consensus         2 ~~~~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liD   81 (693)
T PRK00007          2 ARETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIID   81 (693)
T ss_pred             CCcCcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEe
Confidence            4455677899999999999999999999973  11100  000            1112333333333333456799999


Q ss_pred             CCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621          65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE  130 (253)
Q Consensus        65 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  130 (253)
                      |||+..|.......++.+|++|+|+|+...-.-+....| ..+..   .++|++++.||+|+.++.
T Consensus        82 TPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~---~~~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         82 TPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK---YKVPRIAFVNKMDRTGAD  143 (693)
T ss_pred             CCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH---cCCCEEEEEECCCCCCCC
Confidence            999988877677788999999999998765433332222 22222   468999999999998655

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.69  E-value=4.2e-16  Score=123.59  Aligned_cols=113  Identities=17%  Similarity=0.137  Sum_probs=71.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccC-----------------------ccceeeEEEEEe-------------eC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFIS-----------------------TIGIDFKIKTVD-------------LK   54 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~-------------~~   54 (253)
                      ||+++|+.++|||||+.+|..+.+......                       ..|++.....+.             ..
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999987655432110                       111121110000             01


Q ss_pred             CeEEEEEEEeCCCcccccccchhhhc--CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          55 GKKIKLQIWDTAGQERFHTITTSYYR--GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .....+.++||||++.|.......+.  .+|++++|+|++....- ....++..+..   .++|++++.||+|+.
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~---~~ip~ivvvNK~D~~  151 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALA---LNIPVFVVVTKIDLA  151 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence            12346899999999888654444443  68999999998765321 12233333322   468999999999986

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.69  E-value=2.5e-16  Score=124.42  Aligned_cols=113  Identities=18%  Similarity=0.202  Sum_probs=78.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCC--CCc----cc--------Cccceee--EEEEEeeC--------CeEEEEEEEeCC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAF--NTT----FI--------STIGIDF--KIKTVDLK--------GKKIKLQIWDTA   66 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~--~~~----~~--------~~~~~~~--~~~~~~~~--------~~~~~~~l~Dt~   66 (253)
                      +|+++|+.++|||||+.+|+...-  ...    ..        ..-|++.  ....+.+.        +....+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            799999999999999999974321  100    00        0011121  11122222        347889999999


Q ss_pred             CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      |++.|......+++.+|++|+|+|+++..+......+ ....   ..++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~---~~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQAL---KERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCCcc
Confidence            9999999999999999999999999987655442222 2222   2468999999999985

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.69  E-value=7.5e-16  Score=135.19  Aligned_cols=158  Identities=18%  Similarity=0.154  Sum_probs=114.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc------cccchhhh--c
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF------HTITTSYY--R   80 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~~~~~~--~   80 (253)
                      .++|+++|.||||||||+|++.+.+....--|.+  +...++-.+..+...++++|.||--..      +...+.|+  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGv--TVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGV--TVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCe--eEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            4569999999999999999999877665545544  444444444444455999999995332      22233444  3


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      .+|++|-|+|+++.+.--++.      .+..+-++|++++.|++|.+.                                
T Consensus        81 ~~D~ivnVvDAtnLeRnLylt------lQLlE~g~p~ilaLNm~D~A~--------------------------------  122 (653)
T COG0370          81 KPDLIVNVVDATNLERNLYLT------LQLLELGIPMILALNMIDEAK--------------------------------  122 (653)
T ss_pred             CCCEEEEEcccchHHHHHHHH------HHHHHcCCCeEEEeccHhhHH--------------------------------
Confidence            679999999999876433332      222335899999999999872                                


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                    ..      -..-..+++.+.+|+|++++||++|.|++++...+.+....+..
T Consensus       123 --------------~~------Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~~~~  168 (653)
T COG0370         123 --------------KR------GIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAESKTT  168 (653)
T ss_pred             --------------hc------CCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcccccc
Confidence                          21      22334678899999999999999999999999999877666553

>KOG1423|consensus

Probab=99.68  E-value=6e-16  Score=123.25  Aligned_cols=188  Identities=14%  Similarity=0.071  Sum_probs=116.0

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc------------
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT------------   73 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------   73 (253)
                      ..+.++|+|||.||+|||||.|.+.+.+..+..+.+..... ...-.+..+..++.++||||.-.-..            
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~-~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRH-RILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceee-eeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            46789999999999999999999999988877665543222 23333445678899999999521100            


Q ss_pred             cchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEecc
Q psy9621          74 ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDIT  153 (253)
Q Consensus        74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (253)
                      -....+..+|.+++++|+++....-. .+.+..+..+.  .+|-+++.||+|...+++.--..            .-..+
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l------------~~~Lt  212 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNL------------KDLLT  212 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhh------------HHhcc
Confidence            11235678999999999996332211 24455555554  79999999999998654430000            00000


Q ss_pred             CccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC----ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         154 NEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV----RFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                      +.+.-..-++|+++....-              ..+.+....|.    .+|.+||++|+||+++-++|......
T Consensus       213 ~g~l~~~kl~v~~~f~~~p--------------~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~  272 (379)
T KOG1423|consen  213 NGELAKLKLEVQEKFTDVP--------------SDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP  272 (379)
T ss_pred             ccccchhhhhHHHHhccCC--------------cccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence            0000011233333322211              01111122222    58999999999999999998876544

>PRK12739 elongation factor G; Reviewed

Probab=99.68  E-value=3.3e-16  Score=143.25  Aligned_cols=123  Identities=17%  Similarity=0.151  Sum_probs=83.6

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCC--CCC--ccc------------CccceeeEEEEEeeCCeEEEEEEEeCCC
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDA--FNT--TFI------------STIGIDFKIKTVDLKGKKIKLQIWDTAG   67 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~--~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   67 (253)
                      ++.+..+||+++|++++|||||+++|+...  ...  ...            ..-|++.......+..+..++.+|||||
T Consensus         3 ~~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG   82 (691)
T PRK12739          3 FPLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPG   82 (691)
T ss_pred             CCccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCC
Confidence            456678999999999999999999997421  000  000            0112222222222333456799999999


Q ss_pred             cccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621          68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE  130 (253)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  130 (253)
                      +..|.......++.+|++|+|+|++....-... ..+..+.   ..++|+++++||+|+.+..
T Consensus        83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~---~~~~p~iv~iNK~D~~~~~  141 (691)
T PRK12739         83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQAD---KYGVPRIVFVNKMDRIGAD  141 (691)
T ss_pred             HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECCCCCCCC
Confidence            988887888889999999999999876433222 2222222   2468999999999998653

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.68  E-value=8.7e-16  Score=134.37  Aligned_cols=119  Identities=17%  Similarity=0.089  Sum_probs=75.2

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcc------------c-------------------CccceeeEEEEEeeC
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTF------------I-------------------STIGIDFKIKTVDLK   54 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~------------~-------------------~~~~~~~~~~~~~~~   54 (253)
                      ....+||+++|+.++|||||+.+|+...-....            .                   ..-|++.......+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            456799999999999999999999743211000            0                   001222222233334


Q ss_pred             CeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          55 GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ....++.+|||||++.|.......+..+|++++|+|++....-.....+ . +.... ...|+++++||+|+.
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~-l~~~l-g~~~iIvvvNKiD~~  173 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-F-IATLL-GIKHLVVAVNKMDLV  173 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-H-HHHHh-CCCceEEEEEeeccc
Confidence            4456799999999988865555557999999999998764221111111 1 11111 124788999999986

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.66  E-value=5.4e-16  Score=134.61  Aligned_cols=118  Identities=15%  Similarity=0.111  Sum_probs=79.7

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCC--CC------------------------c---ccCccceeeEEEEEeeCCe
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAF--NT------------------------T---FISTIGIDFKIKTVDLKGK   56 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~--~~------------------------~---~~~~~~~~~~~~~~~~~~~   56 (253)
                      .-+.++|+++|+.++|||||+.+|+...-  ..                        +   ....-|++.......+...
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            34578999999999999999999873110  00                        0   0011233444344445556


Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHH-------HHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD-------NILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~-------~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                      ...+.++||||+++|.......+..+|++|+|+|+++. .|+       ...+.+....   ..++| +++++||+|+.
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~---~~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAF---TLGVKQMICCCNKMDAT  158 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHH---HcCCCcEEEEEEcccCC
Confidence            67899999999999988888889999999999999863 232       1122211111   24675 68889999975

>KOG1489|consensus

Probab=99.65  E-value=3.1e-15  Score=119.77  Aligned_cols=148  Identities=17%  Similarity=0.252  Sum_probs=106.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCc------ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc----cccchhhh-
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTT------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF----HTITTSYY-   79 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~~~~~~-   79 (253)
                      .|.+||.||+|||||++++...+....      -.|.+|      ++.++ +..++.+=|.||..+-    ..+-..|+ 
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG------~v~yd-df~q~tVADiPGiI~GAh~nkGlG~~FLr  270 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG------TVNYD-DFSQITVADIPGIIEGAHMNKGLGYKFLR  270 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc------eeecc-ccceeEeccCccccccccccCcccHHHHH
Confidence            578999999999999999997644221      122222      12222 2234899999996543    44444555 


Q ss_pred             --cCccEEEEEEeCCCh---hhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621          80 --RGAMGIMLVYDITNE---KSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI  152 (253)
Q Consensus        80 --~~~d~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (253)
                        ..|+.+++|+|++..   ..|+.+..+..+++.+.+  .+.|.+||+||+|+..                        
T Consensus       271 HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e------------------------  326 (366)
T KOG1489|consen  271 HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE------------------------  326 (366)
T ss_pred             HHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh------------------------
Confidence              468999999999998   778888877777766653  6899999999999841                        


Q ss_pred             cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCc-eEEeeccCCCCHHHHHHHHHH
Q psy9621         153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVR-FMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                                                    -......++++++.-+ ++++||++++|+..+++.|..
T Consensus       327 ------------------------------ae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  327 ------------------------------AEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             ------------------------------HHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence                                          1112246777777654 999999999999999988764

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.65  E-value=2.9e-15  Score=126.08  Aligned_cols=165  Identities=18%  Similarity=0.134  Sum_probs=106.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc----------cccc-ch
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----------FHTI-TT   76 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~-~~   76 (253)
                      ..+||+++|.|++|||||+|++++..-... .+.-|.+.......+..+...+.++||+|-..          |... ..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv-~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIV-SDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEe-cCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            469999999999999999999997543322 22234444444444443445699999999532          2111 13


Q ss_pred             hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCcc
Q psy9621          77 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEK  156 (253)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (253)
                      ..+..+|++++|+|++.+.+-+..+ ....+..   .+.+++|+.||-|+...                           
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~---~g~~~vIvvNKWDl~~~---------------------------  304 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQDLR-IAGLIEE---AGRGIVIVVNKWDLVEE---------------------------  304 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH---cCCCeEEEEEccccCCc---------------------------
Confidence            4567899999999999876544432 2223332   57899999999998621                           


Q ss_pred             chhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         157 SFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                         +..... .............+ .+.+++||++|.|++.+|+.+.......
T Consensus       305 -------------------~~~~~~-~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~  353 (444)
T COG1160         305 -------------------DEATME-EFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECA  353 (444)
T ss_pred             -------------------hhhHHH-HHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHh
Confidence                               110000 00111112122223 6999999999999999999887765543

>COG2262 HflX GTPases [General function prediction only]

Probab=99.65  E-value=5e-15  Score=122.91  Aligned_cols=161  Identities=14%  Similarity=0.109  Sum_probs=108.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc--cccchh------h
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF--HTITTS------Y   78 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~~------~   78 (253)
                      .....|.++|-+|+|||||+|++.+........-.-..+-....+.+.+ ...+.+-||.|....  ..+...      -
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE  268 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE  268 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence            4567899999999999999999996443322111112233444555554 345889999997432  122222      2


Q ss_pred             hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      ...+|+++.|+|+++|...+.+.....-+......++|+++|.||+|+..                              
T Consensus       269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~------------------------------  318 (411)
T COG2262         269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLE------------------------------  318 (411)
T ss_pred             hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccC------------------------------
Confidence            46899999999999997666666555555554446799999999999761                              


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                      ..         .....+....+ ..+.+||++|.|++.|++.|...+...
T Consensus       319 ----------------~~---------~~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         319 ----------------DE---------EILAELERGSP-NPVFISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             ----------------ch---------hhhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence                            11         01111111112 579999999999999999999988754

>CHL00071 tufA elongation factor Tu

Probab=99.65  E-value=5.5e-15  Score=127.53  Aligned_cols=117  Identities=13%  Similarity=0.082  Sum_probs=78.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCC------c--------ccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT------T--------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH   72 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   72 (253)
                      .+.++|+++|++++|||||+++|++..-..      .        ....-|++.......+..+..++.++||||+..|.
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~   89 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV   89 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence            467999999999999999999998531110      0        00112444443344444455678899999998886


Q ss_pred             ccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          73 TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                      ......+..+|++++|+|+.....-. ....+..+..   .++| ++++.||+|+.
T Consensus        90 ~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~---~g~~~iIvvvNK~D~~  141 (409)
T CHL00071         90 KNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQ---VGVPNIVVFLNKEDQV  141 (409)
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEccCCC
Confidence            66666778999999999998643211 1222222222   4688 67889999986

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.65  E-value=5.2e-15  Score=112.17  Aligned_cols=163  Identities=14%  Similarity=0.172  Sum_probs=108.2

Q ss_pred             CccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCc----------ccc
Q psy9621           2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ----------ERF   71 (253)
Q Consensus         2 ~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~   71 (253)
                      .+.|.+...-|+++|-+|||||||+|++.+.+.-.-...|.|.+.....+.+.+.   +.++|.||-          +.+
T Consensus        17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w   93 (200)
T COG0218          17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKW   93 (200)
T ss_pred             hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHH
Confidence            3557788889999999999999999999986643333455565555444554443   889999994          455


Q ss_pred             cccchhhhcC---ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEE
Q psy9621          72 HTITTSYYRG---AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIML  148 (253)
Q Consensus        72 ~~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  148 (253)
                      ..+...|+..   ..++++++|+-.+-.-.+. +.++-+.   ..++|+++++||+|-..                    
T Consensus        94 ~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~---~~~i~~~vv~tK~DKi~--------------------  149 (200)
T COG0218          94 KKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLL---ELGIPVIVVLTKADKLK--------------------  149 (200)
T ss_pred             HHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHH---HcCCCeEEEEEccccCC--------------------
Confidence            6666667653   5678888898765432222 2222222   25899999999999762                    


Q ss_pred             EEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh----CCc--eEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         149 VYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY----GVR--FMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                                                ..+     . .......++..    ...  ++..|+.++.|++++...|...+.
T Consensus       150 --------------------------~~~-----~-~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         150 --------------------------KSE-----R-NKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             --------------------------hhH-----H-HHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence                                      111     0 01112233232    222  789999999999999999887764


Q ss_pred             h
Q psy9621         223 D  223 (253)
Q Consensus       223 ~  223 (253)
                      .
T Consensus       198 ~  198 (200)
T COG0218         198 E  198 (200)
T ss_pred             c
Confidence            3

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.65  E-value=2e-15  Score=130.12  Aligned_cols=115  Identities=16%  Similarity=0.073  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcc-------------------------------cCccceeeEEEEEeeCCeEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTF-------------------------------ISTIGIDFKIKTVDLKGKKI   58 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   58 (253)
                      +||+++|+.++|||||+.+|+...-....                               ...-|++.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999999632110000                               00112222222333333456


Q ss_pred             EEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          59 KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        59 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ++.+|||||++.|.......+..+|++|+|+|++....-+....+ ..+.. . ...++++++||+|+.
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~-~-~~~~iivviNK~D~~  146 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASL-L-GIRHVVLAVNKMDLV  146 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHH-c-CCCcEEEEEEecccc
Confidence            799999999998876666678899999999998765322221111 11111 1 223588899999986

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.65  E-value=8e-15  Score=114.45  Aligned_cols=111  Identities=14%  Similarity=0.191  Sum_probs=68.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccce---eeEEEEEeeCCeEEEEEEEeCCCcccccccchh-----hhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGI---DFKIKTVDLKGKKIKLQIWDTAGQERFHTITTS-----YYR   80 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-----~~~   80 (253)
                      .+||+++|.+|+|||||+|.+.+.........+.+.   +.....+... ....+.+|||||..........     .+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            379999999999999999999985544322222221   1111111111 1236899999997543222222     356


Q ss_pred             CccEEEEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          81 GAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .+|+++++.+-    ++... ..|++.+...   +.|+++|+||+|+.
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~  120 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRD  120 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccch
Confidence            78998887432    23333 3455555443   57999999999985

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.65  E-value=5.1e-16  Score=122.39  Aligned_cols=182  Identities=16%  Similarity=0.198  Sum_probs=116.3

Q ss_pred             ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc-------ccccc
Q psy9621           3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER-------FHTIT   75 (253)
Q Consensus         3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~   75 (253)
                      +......++|+++|.+|+|||||+|+++.+...+...-..+.+.....+... ..-.+.+||+||-++       |+.+.
T Consensus        33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D~~~r~~~  111 (296)
T COG3596          33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY-DGENLVLWDTPGLGDGKDKDAEHRQLY  111 (296)
T ss_pred             hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhc-cccceEEecCCCcccchhhhHHHHHHH
Confidence            4456678999999999999999999999766555433233333332222111 224599999999765       56667


Q ss_pred             hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621          76 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE  155 (253)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (253)
                      ..++...|.++++.++.++.- ..-.++++.+.... -+.+++++.|..|.+...                         
T Consensus       112 ~d~l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~-------------------------  164 (296)
T COG3596         112 RDYLPKLDLVLWLIKADDRAL-GTDEDFLRDVIILG-LDKRVLFVVTQADRAEPG-------------------------  164 (296)
T ss_pred             HHHhhhccEEEEeccCCCccc-cCCHHHHHHHHHhc-cCceeEEEEehhhhhccc-------------------------
Confidence            778899999999999988852 22234444444433 458999999999987431                         


Q ss_pred             cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh--CCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY--GVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                            ..|...-     ..+............+...+..  --|++.+|...++|++.+...+++.+..
T Consensus       165 ------~~W~~~~-----~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         165 ------REWDSAG-----HQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             ------ccccccc-----CCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence                  0111100     0111111112222233333332  2599999999999999999999988863

>KOG0462|consensus

Probab=99.64  E-value=3.5e-15  Score=127.09  Aligned_cols=169  Identities=15%  Similarity=0.181  Sum_probs=120.1

Q ss_pred             ccccCceeEEEEEcCCCCcHHHHHHHhhcCCC--CC-----------cccCccceeeEEEEEeeC---CeEEEEEEEeCC
Q psy9621           3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAF--NT-----------TFISTIGIDFKIKTVDLK---GKKIKLQIWDTA   66 (253)
Q Consensus         3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~--~~-----------~~~~~~~~~~~~~~~~~~---~~~~~~~l~Dt~   66 (253)
                      ..|.+...|+.+|-+-.=|||||..|++...-  +.           .....-|++...++....   +..+.++++|||
T Consensus        54 ~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTP  133 (650)
T KOG0462|consen   54 LDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTP  133 (650)
T ss_pred             cCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCC
Confidence            34668889999999999999999999974211  11           011223556555554443   444889999999


Q ss_pred             CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceee
Q psy9621          67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGI  146 (253)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  146 (253)
                      ||-+|....+..+.-|+++|+|+|++..-.-+.+..++..+    +.+..+|.|+||+|+..++                
T Consensus       134 GHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf----e~~L~iIpVlNKIDlp~ad----------------  193 (650)
T KOG0462|consen  134 GHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF----EAGLAIIPVLNKIDLPSAD----------------  193 (650)
T ss_pred             CcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH----HcCCeEEEeeeccCCCCCC----------------
Confidence            99999999999999999999999998764444444433333    3578999999999997421                


Q ss_pred             EEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         147 MLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                                   ++     .-..+..++....+-+.+.+||++|.|++++++.+++.+.--.
T Consensus       194 -----------------------------pe-----~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~  238 (650)
T KOG0462|consen  194 -----------------------------PE-----RVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPK  238 (650)
T ss_pred             -----------------------------HH-----HHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence                                         11     1112222333233348899999999999999999998886543

>PRK00049 elongation factor Tu; Reviewed

Probab=99.64  E-value=8e-15  Score=125.95  Aligned_cols=123  Identities=15%  Similarity=0.119  Sum_probs=81.7

Q ss_pred             CCcccc---CceeEEEEEcCCCCcHHHHHHHhhcCCCC-------C-------cccCccceeeEEEEEeeCCeEEEEEEE
Q psy9621           1 MAKKTY---DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-------T-------TFISTIGIDFKIKTVDLKGKKIKLQIW   63 (253)
Q Consensus         1 m~~~~~---~~~~ki~vvG~~~~GKStL~~~l~~~~~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~   63 (253)
                      |++..+   .+.++|+++|+.++|||||+++|++....       .       .....-|++.......+.....++.++
T Consensus         1 ~~~~~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~i   80 (396)
T PRK00049          1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHV   80 (396)
T ss_pred             CchhhccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEE
Confidence            455433   36899999999999999999999862110       0       000122444444444454455678999


Q ss_pred             eCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccccccee-EEeeeeccc
Q psy9621          64 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKM-ILGKTKDTA  127 (253)
Q Consensus        64 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~D~~  127 (253)
                      ||||+.+|.......+..+|++++|+|+.....-. ....+..+..   .++|.+ ++.||+|+.
T Consensus        81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~---~g~p~iiVvvNK~D~~  141 (396)
T PRK00049         81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMV  141 (396)
T ss_pred             ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHH---cCCCEEEEEEeecCCc
Confidence            99999887666666778999999999998653222 1223333322   368976 589999986

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.63  E-value=4.8e-15  Score=117.15  Aligned_cols=168  Identities=14%  Similarity=0.239  Sum_probs=101.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEee-CCeEEEEEEEeCCCcccccc-----cchhhhcCccE
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDL-KGKKIKLQIWDTAGQERFHT-----ITTSYYRGAMG   84 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~d~   84 (253)
                      ||+++|+.|+||||+.+.+..+..+.. ...++.+.......+ ......+.+||+||+..+..     .....++++.+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999999998887654433 222222222222222 23456899999999976533     45778999999


Q ss_pred             EEEEEeCCChhh---HHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621          85 IMLVYDITNEKS---FDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI  161 (253)
Q Consensus        85 ~ilv~d~~~~~s---~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      +|+|+|+.+.+-   +......+..+.+.. +++.+.++.+|+|+.....                              
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~------------------------------  128 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDE------------------------------  128 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHH------------------------------
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHH------------------------------
Confidence            999999985443   333444555555554 7899999999999862211                              


Q ss_pred             HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC---CceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG---VRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                    +..... ...+...+.+...+   +.++.||..+ ..+-+++..++..+..+..
T Consensus       129 --------------r~~~~~-~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP~~~  180 (232)
T PF04670_consen  129 --------------REEIFR-DIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIPNLS  180 (232)
T ss_dssp             --------------HHHHHH-HHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTSTTHC
T ss_pred             --------------HHHHHH-HHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHcccHH
Confidence                          000000 11222333333444   7888888887 4888888888887765443

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.63  E-value=4.8e-16  Score=117.69  Aligned_cols=118  Identities=23%  Similarity=0.360  Sum_probs=75.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEee-CCeEEEEEEEeCCCcccccccchh---hhcCccEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDL-KGKKIKLQIWDTAGQERFHTITTS---YYRGAMGI   85 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~---~~~~~d~~   85 (253)
                      -.|+++|+.|+|||+|+.+|..+...++..+. .-..   ...+ ......+.++|+|||.+.+.....   +.+.+.++
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            46999999999999999999998665553333 2111   1222 223456999999999988764433   47889999


Q ss_pred             EEEEeCCC-hhhHHHHHHHHHHHHHhc---ccccceeEEeeeeccccccc
Q psy9621          86 MLVYDITN-EKSFDNILKWLRNIDEHA---NEDVEKMILGKTKDTAGQER  131 (253)
Q Consensus        86 ilv~d~~~-~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~  131 (253)
                      |||+|.+. ...+..+.+++..++...   ...+|++|+.||.|+..++.
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~  129 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP  129 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence            99999874 445666666666655443   37899999999999986544

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.62  E-value=1.8e-14  Score=125.73  Aligned_cols=118  Identities=14%  Similarity=0.078  Sum_probs=80.2

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCC------CCCc--------ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDA------FNTT--------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF   71 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   71 (253)
                      ..+.+||+++|+.++|||||+++|+...      ....        .....|++.......+......+.+||+||+++|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            4568999999999999999999998521      1110        0112244443333334444567899999999998


Q ss_pred             cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                      .......+..+|++++|+|+.+...-.. .+++..+..   .++| ++++.||+|+.
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~---~gi~~iIvvvNK~Dl~  210 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ---VGVPNMVVFLNKQDQV  210 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeccccc
Confidence            7766677789999999999886533222 233333322   3678 67889999986

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.62  E-value=6.6e-15  Score=133.69  Aligned_cols=122  Identities=14%  Similarity=0.064  Sum_probs=76.3

Q ss_pred             ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcc------------c----C---------------ccceeeEEEEE
Q psy9621           3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTF------------I----S---------------TIGIDFKIKTV   51 (253)
Q Consensus         3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~------------~----~---------------~~~~~~~~~~~   51 (253)
                      +......++|+++|++++|||||+++|+...-....            .    .               .-|++......
T Consensus        18 ~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~   97 (632)
T PRK05506         18 QHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYR   97 (632)
T ss_pred             hccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeee
Confidence            345566799999999999999999999853211100            0    0               01122222222


Q ss_pred             eeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          52 DLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        52 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .+.....++.++||||++.|.......+..+|++++|+|++....-.... .+..+...  ...|+++++||+|+.
T Consensus        98 ~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~~~~~~~--~~~~iivvvNK~D~~  170 (632)
T PRK05506         98 YFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR-HSFIASLL--GIRHVVLAVNKMDLV  170 (632)
T ss_pred             EEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH-HHHHHHHh--CCCeEEEEEEecccc
Confidence            23334456889999999887655555678999999999997653211111 11112211  235788899999986

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.61  E-value=1.4e-14  Score=121.74  Aligned_cols=168  Identities=18%  Similarity=0.205  Sum_probs=122.4

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc-------------ccCccceeeEEEEEee-----CCeEEEEEE
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT-------------FISTIGIDFKIKTVDL-----KGKKIKLQI   62 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~-----~~~~~~~~l   62 (253)
                      |...+.....|.+++-+-.=|||||..|++...-.-+             ...--|++...+.+.+     ++.++.+++
T Consensus         1 ~~~~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnl   80 (603)
T COG0481           1 MTFTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNL   80 (603)
T ss_pred             CCccchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEE
Confidence            4456777888999999999999999999973211100             0112245554444433     346789999


Q ss_pred             EeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccccccccc
Q psy9621          63 WDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRG  142 (253)
Q Consensus        63 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~  142 (253)
                      +|||||-.|....+..+..|.++++|+|++..-.-+.+...+..+    +++.-++.|+||+|+..+             
T Consensus        81 IDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl----e~~LeIiPViNKIDLP~A-------------  143 (603)
T COG0481          81 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENNLEIIPVLNKIDLPAA-------------  143 (603)
T ss_pred             cCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH----HcCcEEEEeeecccCCCC-------------
Confidence            999999999999999999999999999999875555555554444    457899999999999732             


Q ss_pred             ceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHH
Q psy9621         143 AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                                                       +       ......++-.-+|+   ..+.+||++|.||+++++.|+.
T Consensus       144 ---------------------------------d-------pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~  183 (603)
T COG0481         144 ---------------------------------D-------PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVE  183 (603)
T ss_pred             ---------------------------------C-------HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHh
Confidence                                             1       11223344444553   5699999999999999999999


Q ss_pred             HHHhcc
Q psy9621         220 AIYDKT  225 (253)
Q Consensus       220 ~~~~~~  225 (253)
                      .+..-.
T Consensus       184 ~iP~P~  189 (603)
T COG0481         184 KIPPPK  189 (603)
T ss_pred             hCCCCC
Confidence            887643

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.60  E-value=3.1e-14  Score=118.09  Aligned_cols=81  Identities=19%  Similarity=0.316  Sum_probs=57.6

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCC------CcccCccceeeEEEE---------------EeeCC-eEEEEEEEeCCCc-
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDDAFN------TTFISTIGIDFKIKT---------------VDLKG-KKIKLQIWDTAGQ-   68 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~~~~------~~~~~~~~~~~~~~~---------------~~~~~-~~~~~~l~Dt~G~-   68 (253)
                      |+++|.|+||||||++++.+....      .+..|++|..+....               ...++ +.+.+++|||||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999987643      223455554443211               00122 3467999999998 


Q ss_pred             ---ccccccchhh---hcCccEEEEEEeCC
Q psy9621          69 ---ERFHTITTSY---YRGAMGIMLVYDIT   92 (253)
Q Consensus        69 ---~~~~~~~~~~---~~~~d~~ilv~d~~   92 (253)
                         +++.++...+   ++.+|++++|+|++
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               5566665555   89999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK12740 elongation factor G; Reviewed

Probab=99.60  E-value=6.2e-15  Score=134.92  Aligned_cols=112  Identities=22%  Similarity=0.261  Sum_probs=76.1

Q ss_pred             EcCCCCcHHHHHHHhhcCCCC--------Cc-----cc---CccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhh
Q psy9621          15 IGDSGVGKTCVLFRFSDDAFN--------TT-----FI---STIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSY   78 (253)
Q Consensus        15 vG~~~~GKStL~~~l~~~~~~--------~~-----~~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   78 (253)
                      +|+.|+|||||+++|+...-.        ..     +.   ..-+++.......+......+.+|||||+..|...+..+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            699999999999999532110        00     00   011222222222333345789999999998887777888


Q ss_pred             hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621          79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE  130 (253)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  130 (253)
                      +..+|++|+|+|++..........| ..+.   ..++|+++++||+|+...+
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~---~~~~p~iiv~NK~D~~~~~  128 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAE---KYGVPRIIFVNKMDRAGAD  128 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHHHH-HHHH---HcCCCEEEEEECCCCCCCC
Confidence            9999999999999887655544333 2222   2478999999999998654

>cd01850 CDC_Septin CDC/Septin

Probab=99.60  E-value=1.3e-14  Score=118.70  Aligned_cols=116  Identities=17%  Similarity=0.322  Sum_probs=76.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCc----------ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc---
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT----------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT---   73 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---   73 (253)
                      ...+||+|+|.+|+|||||+++|++..+...          ..++.+++.....+..++..+.+.+|||||......   
T Consensus         2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~   81 (276)
T cd01850           2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD   81 (276)
T ss_pred             CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence            3578999999999999999999998776543          344555555555666667778999999999543211   


Q ss_pred             -----------------------cchhhhc--CccEEEEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          74 -----------------------ITTSYYR--GAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        74 -----------------------~~~~~~~--~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                                             .+...+.  .+|+++++++.+.. .+... ...+..+   . ..+|+++|+||+|+.
T Consensus        82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l---~-~~v~vi~VinK~D~l  156 (276)
T cd01850          82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRL---S-KRVNIIPVIAKADTL  156 (276)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHH---h-ccCCEEEEEECCCcC
Confidence                                   1112233  35667777776542 12111 2223333   2 368999999999985

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>KOG3905|consensus

Probab=99.60  E-value=3.3e-14  Score=114.19  Aligned_cols=171  Identities=18%  Similarity=0.314  Sum_probs=123.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEee--CCeEEEEEEEeCCCcccccccchhhhcCc----cE
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDL--KGKKIKLQIWDTAGQERFHTITTSYYRGA----MG   84 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----d~   84 (253)
                      +|+|+|+.|+|||||+.++-+..   .+.+.-|..|....+.-  ++...++.+|-..|...+.++....+...    -+
T Consensus        54 ~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl  130 (473)
T KOG3905|consen   54 NVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL  130 (473)
T ss_pred             eEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence            89999999999999999998743   44555566776555532  34457789999999877777777666543    36


Q ss_pred             EEEEEeCCChhh-HHHHHHHHHHHHHhccc--------------------------------------------------
Q psy9621          85 IMLVYDITNEKS-FDNILKWLRNIDEHANE--------------------------------------------------  113 (253)
Q Consensus        85 ~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~--------------------------------------------------  113 (253)
                      +|++.|+++|.+ ++.+.+|..-+.++...                                                  
T Consensus       131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll  210 (473)
T KOG3905|consen  131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL  210 (473)
T ss_pred             EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence            788999999955 67777888776655411                                                  


Q ss_pred             -----------ccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhh
Q psy9621         114 -----------DVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW  182 (253)
Q Consensus       114 -----------~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (253)
                                 ++|+++|.+|+|..                               .-+..-.+.-++++    .     
T Consensus       211 PL~~dtLt~NlGi~vlVV~TK~D~~-------------------------------s~leke~eyrDehf----d-----  250 (473)
T KOG3905|consen  211 PLGQDTLTHNLGIPVLVVCTKCDAV-------------------------------SVLEKEHEYRDEHF----D-----  250 (473)
T ss_pred             ccCCcchhhcCCCcEEEEEeccchh-------------------------------hHhhhcchhhHHHH----H-----
Confidence                       47777777777763                               11111111112222    1     


Q ss_pred             ccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         183 VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                      ......+.||.++|..+|++|+++..|++-|+..|+..++--
T Consensus       251 fiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG~  292 (473)
T KOG3905|consen  251 FIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYGF  292 (473)
T ss_pred             HHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcCc
Confidence            455678999999999999999999999999999999887653

>KOG0077|consensus

Probab=99.59  E-value=1.9e-15  Score=109.71  Aligned_cols=124  Identities=20%  Similarity=0.291  Sum_probs=97.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      +.=|++++|-.|+|||||++.+.+.+...- .||.    .+..-.+...+.++..+|.+|+..-+..++.++..+|++++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh-vPTl----HPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH-VPTL----HPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHcccccccc-CCCc----CCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            344899999999999999999997665433 2222    11111223356789999999999889899999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeecccccccccccc
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTIT  136 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~  136 (253)
                      .+|+-+.+.|...+..++.+..... ...|++|.+||+|..++-+..+.+
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~  143 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELR  143 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHH
Confidence            9999999999999888887766542 789999999999999886554444

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.59  E-value=1.1e-14  Score=126.65  Aligned_cols=118  Identities=16%  Similarity=0.105  Sum_probs=78.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcC--CCCC------------------------cc---cCccceeeEEEEEeeCCeE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDD--AFNT------------------------TF---ISTIGIDFKIKTVDLKGKK   57 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~--~~~~------------------------~~---~~~~~~~~~~~~~~~~~~~   57 (253)
                      .+.++|+++|+.++|||||+.+|+..  ....                        +.   ...-|++.......+....
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            45689999999999999999998751  1110                        00   0112344444444455566


Q ss_pred             EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh---hH---HHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK---SF---DNILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                      ..+.++||||+.+|.......+..+|++|+|+|++...   .+   ....+.+..+..   .++| ++++.||+|..
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~  158 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDK  158 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccc
Confidence            78999999999999777777789999999999998642   11   111121222222   4677 56899999953

>PLN03127 Elongation factor Tu; Provisional

Probab=99.59  E-value=6.3e-14  Score=121.69  Aligned_cols=119  Identities=14%  Similarity=0.068  Sum_probs=77.9

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcC------CCCCc--------ccCccceeeEEEEEeeCCeEEEEEEEeCCCccc
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDD------AFNTT--------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER   70 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   70 (253)
                      ..-+.++|+++|+.++|||||+++|.+.      .....        ....-|++.......+.....++.++||||+..
T Consensus        57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence            3456799999999999999999999621      10000        001123344444445555566789999999988


Q ss_pred             ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccce-eEEeeeeccc
Q psy9621          71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEK-MILGKTKDTA  127 (253)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~nK~D~~  127 (253)
                      |..........+|++++|+|++....-+. .+.+..+..   .++|. +++.||+|+.
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~---~gip~iIvviNKiDlv  190 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVVFLNKVDVV  190 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEeeccC
Confidence            86655556678999999999876532111 222222222   46884 6789999986

>KOG0090|consensus

Probab=99.58  E-value=4.6e-15  Score=112.38  Aligned_cols=188  Identities=18%  Similarity=0.245  Sum_probs=114.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc---CccEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR---GAMGIM   86 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~d~~i   86 (253)
                      -.|+++|+.++|||+|+.+|..+.....+.     .+.+....+..+.-.++++|.|||.+.+.-...+++   .+-+++
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt-----Siepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT-----SIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeee-----eeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            479999999999999999999874443322     222222223323334899999999887766666666   788999


Q ss_pred             EEEeCCC-hhhHHHHHHHHHHHHHhc---ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          87 LVYDITN-EKSFDNILKWLRNIDEHA---NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        87 lv~d~~~-~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      ||+|... +.....+.+++-.+....   .+.+|++|+.||.|+..++.++.+++...               ...+.++
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LE---------------kEi~~lr  178 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLE---------------KEIHKLR  178 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHH---------------HHHHHHH
Confidence            9998653 334555555555544433   58899999999999998887766665311               1111111


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHH--HHHH--HhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGE--AIAR--EYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                      +-+.......  ......+......+.  +|..  ...+.+.++|++++ +++++-++|.+.
T Consensus       179 ~sRsa~~~~~--~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  179 ESRSALRSIS--DEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             HHHhhhhccc--cccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence            1111000000  000000112222222  2322  23478999999999 999999988764

>KOG1145|consensus

Probab=99.58  E-value=4.4e-14  Score=120.49  Aligned_cols=183  Identities=17%  Similarity=0.163  Sum_probs=122.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      .-|-++|+-.=|||||+..|.+......-...+.-.....++.+..+ ..+.+.|||||..|..|+..-....|++++|+
T Consensus       154 PVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVV  232 (683)
T KOG1145|consen  154 PVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVLVV  232 (683)
T ss_pred             CeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEEEE
Confidence            45789999999999999999976655432222211122334444433 56999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      .++|.--    .+.++.|......+.|+++++||+|..++                                        
T Consensus       233 AadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~a----------------------------------------  268 (683)
T KOG1145|consen  233 AADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPGA----------------------------------------  268 (683)
T ss_pred             EccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCCC----------------------------------------
Confidence            9887531    22333344444478999999999997632                                        


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeecCCCC
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPD  244 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (253)
                           +++.....+..  .--..+.+|  ++++++||++|.|++.|-+.+.....-....-+|.....-.-|++.=.
T Consensus       269 -----~pekv~~eL~~--~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vd  338 (683)
T KOG1145|consen  269 -----NPEKVKRELLS--QGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVD  338 (683)
T ss_pred             -----CHHHHHHHHHH--cCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeec
Confidence                 11110000000  011233454  899999999999999999988877766666666655554555554433

>KOG1144|consensus

Probab=99.56  E-value=8.1e-15  Score=128.48  Aligned_cols=184  Identities=16%  Similarity=0.122  Sum_probs=116.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCc----ccCccceeeEEEEE--------ee----CCeEEEEEEEeCCCccccccc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTT----FISTIGIDFKIKTV--------DL----KGKKIKLQIWDTAGQERFHTI   74 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~----~~~~~~~~~~~~~~--------~~----~~~~~~~~l~Dt~G~~~~~~~   74 (253)
                      =|||+|+..+|||-|+..+...+....    ....+|.+|.+..-        .-    +.+...+.++||||++.|.++
T Consensus       477 IcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnl  556 (1064)
T KOG1144|consen  477 ICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNL  556 (1064)
T ss_pred             eEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhh
Confidence            489999999999999999987554432    23445555554320        00    122346899999999999999


Q ss_pred             chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621          75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN  154 (253)
Q Consensus        75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (253)
                      ++.....||.+|+|+|+-..-.-    +.++.|.-....+.|+||++||+|..                    +-|....
T Consensus       557 RsrgsslC~~aIlvvdImhGlep----qtiESi~lLR~rktpFivALNKiDRL--------------------Ygwk~~p  612 (1064)
T KOG1144|consen  557 RSRGSSLCDLAILVVDIMHGLEP----QTIESINLLRMRKTPFIVALNKIDRL--------------------YGWKSCP  612 (1064)
T ss_pred             hhccccccceEEEEeehhccCCc----chhHHHHHHHhcCCCeEEeehhhhhh--------------------cccccCC
Confidence            99999999999999998653111    22333333444689999999999975                    3334344


Q ss_pred             ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH------------hC--CceEEeeccCCCCHHHHHHHHHHH
Q psy9621         155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE------------YG--VRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~--~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                      ..++.+...-+..-.......+       .....-+|+++            .+  +.++++||.+|+||.+|+.+|+..
T Consensus       613 ~~~i~~~lkkQ~k~v~~EF~~R-------~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l  685 (1064)
T KOG1144|consen  613 NAPIVEALKKQKKDVQNEFKER-------LNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL  685 (1064)
T ss_pred             CchHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence            4444444332221111100000       00011122211            12  688999999999999999998876


Q ss_pred             HHhcc
Q psy9621         221 IYDKT  225 (253)
Q Consensus       221 ~~~~~  225 (253)
                      ....+
T Consensus       686 tQk~m  690 (1064)
T KOG1144|consen  686 TQKTM  690 (1064)
T ss_pred             HHHHH
Confidence            65544

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.56  E-value=1.2e-13  Score=119.91  Aligned_cols=166  Identities=13%  Similarity=0.070  Sum_probs=101.1

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCC---CCcccC----ccceeeEEE-----------EEeeCC-----------
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAF---NTTFIS----TIGIDFKIK-----------TVDLKG-----------   55 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~---~~~~~~----~~~~~~~~~-----------~~~~~~-----------   55 (253)
                      ..+..++|.++|+-..|||||+.+|.+...   .++...    ..|+.+...           ....+.           
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            346789999999999999999999985322   111111    112211100           000110           


Q ss_pred             -----eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeeeccccc
Q psy9621          56 -----KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ  129 (253)
Q Consensus        56 -----~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  129 (253)
                           -...+.++|+||++.|.......+..+|++++|+|++... .-+. .+.+..+.. . .-.|++++.||+|+...
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~i~~~-l-gi~~iIVvlNKiDlv~~  186 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLAAVEI-M-KLKHIIILQNKIDLVKE  186 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHHHHHH-c-CCCcEEEEEecccccCH
Confidence                 0236899999999988766666778999999999998641 1111 122222211 1 22468899999998621


Q ss_pred             cccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH---hCCceEEeeccC
Q psy9621         130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE---YGVRFMETSAKA  206 (253)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~  206 (253)
                      .                             ...+                    ..++.+++.+.   ...+++++||++
T Consensus       187 ~-----------------------------~~~~--------------------~~~ei~~~l~~~~~~~~~iipVSA~~  217 (460)
T PTZ00327        187 A-----------------------------QAQD--------------------QYEEIRNFVKGTIADNAPIIPISAQL  217 (460)
T ss_pred             H-----------------------------HHHH--------------------HHHHHHHHHHhhccCCCeEEEeeCCC
Confidence            0                             0000                    01112222221   257999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy9621         207 NINIEKAFIELATAIY  222 (253)
Q Consensus       207 ~~gi~~l~~~l~~~~~  222 (253)
                      |.|++.|++.|...+.
T Consensus       218 G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        218 KYNIDVVLEYICTQIP  233 (460)
T ss_pred             CCCHHHHHHHHHhhCC
Confidence            9999999999987554

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.54  E-value=2.4e-13  Score=106.03  Aligned_cols=166  Identities=12%  Similarity=0.162  Sum_probs=97.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeE--EEEEeeCCeEEEEEEEeCCCcccccc--------c---ch
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFK--IKTVDLKGKKIKLQIWDTAGQERFHT--------I---TT   76 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~---~~   76 (253)
                      ++|+++|.+|+|||||+|.+++...........+.+..  .....+.  ...+.++||||......        +   ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD--GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC--CeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            58999999999999999999987654332111122222  1222233  35699999999754321        1   11


Q ss_pred             hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621          77 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN  154 (253)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (253)
                      ...+++|++|+|+++.+ .+-. ....++.+.+.++  .-.+++++.|+.|.....+                       
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~-----------------------  133 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGT-----------------------  133 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCc-----------------------
Confidence            22467899999999886 2222 2233444444332  1257888888888652211                       


Q ss_pred             ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEee-----ccCCCCHHHHHHHHHHHHHhc
Q psy9621         155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETS-----AKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-----a~~~~gi~~l~~~l~~~~~~~  224 (253)
                         +++.   ..                -.....+.+.+..+-.++..+     +..+.++++|++.+-+++.++
T Consensus       134 ---~~~~---~~----------------~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~  186 (196)
T cd01852         134 ---LEDY---LE----------------NSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKEN  186 (196)
T ss_pred             ---HHHH---HH----------------hccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence               1111   00                112344555555554443333     456778999999999888773

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.54  E-value=1.3e-13  Score=98.37  Aligned_cols=106  Identities=17%  Similarity=0.210  Sum_probs=66.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc---------cchhhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT---------ITTSYYR   80 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------~~~~~~~   80 (253)
                      +|+|+|.+|+|||||+++|.+..... ...+..........+.+++.  .+.++||||...-..         .....+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            69999999999999999999754322 11111111122233344443  467999999743211         1222347


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeee
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT  123 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK  123 (253)
                      .+|++++|+|.+++.. +.....++++.    .+.|+++|.||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            8999999999877422 22333444442    57999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.54  E-value=2e-13  Score=110.76  Aligned_cols=157  Identities=14%  Similarity=0.172  Sum_probs=103.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC------CeEEEEEEEeCCCccc----ccccchhhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK------GKKIKLQIWDTAGQER----FHTITTSYYR   80 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~Dt~G~~~----~~~~~~~~~~   80 (253)
                      -|.+||.|++|||||+++++..+....       +|...++..+      ...-.+.+=|.||..+    -..+-..|++
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIa-------dYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLr  233 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIA-------DYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLR  233 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCccc-------CCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHH
Confidence            367999999999999999997654321       2222222111      2334588999999643    3445555554


Q ss_pred             ---CccEEEEEEeCCChh---hHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621          81 ---GAMGIMLVYDITNEK---SFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI  152 (253)
Q Consensus        81 ---~~d~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (253)
                         .+.+++.|+|++..+   ..++......++..+..  .+.|.+||+||+|+.                         
T Consensus       234 HIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~-------------------------  288 (369)
T COG0536         234 HIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP-------------------------  288 (369)
T ss_pred             HHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC-------------------------
Confidence               688999999998654   35555566666655542  689999999999976                         


Q ss_pred             cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceE-EeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFM-ETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                           ...+     ......+.+.+..+...+ .+||.+++|++.|...+.+.+....
T Consensus       289 ---------------------~~~e-----~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         289 ---------------------LDEE-----ELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             ---------------------cCHH-----HHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence                                 1221     122223334444443322 2999999999999999999887764

>KOG1532|consensus

Probab=99.53  E-value=1.3e-14  Score=114.13  Aligned_cols=141  Identities=14%  Similarity=0.193  Sum_probs=77.7

Q ss_pred             EEEEEEeCCCcccc--cc----cchh--hhcCccEEEEEEeCC---ChhhHHH-HHHHHHHHHHhcccccceeEEeeeec
Q psy9621          58 IKLQIWDTAGQERF--HT----ITTS--YYRGAMGIMLVYDIT---NEKSFDN-ILKWLRNIDEHANEDVEKMILGKTKD  125 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~--~~----~~~~--~~~~~d~~ilv~d~~---~~~s~~~-~~~~~~~i~~~~~~~~p~iiv~nK~D  125 (253)
                      .+..++||||+.+-  +.    ....  .....-+++.++|..   ++.+|-. +.+.-..+.   ...+|+|++.||.|
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSily---ktklp~ivvfNK~D  192 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILY---KTKLPFIVVFNKTD  192 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHH---hccCCeEEEEeccc
Confidence            46889999999652  11    1111  123345566676643   2333322 222222222   35799999999999


Q ss_pred             cccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCC---CchhhhhhccchhHHHHHHHh-CCceEE
Q psy9621         126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE---DPQVVNSWVCKHRGEAIAREY-GVRFME  201 (253)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~  201 (253)
                      +.+..-                             ..+|...+...-..   ........+......-+-+-+ ++..+-
T Consensus       193 v~d~~f-----------------------------a~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~  243 (366)
T KOG1532|consen  193 VSDSEF-----------------------------ALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVG  243 (366)
T ss_pred             ccccHH-----------------------------HHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEE
Confidence            974322                             23454433322211   111111112222222222222 377899


Q ss_pred             eeccCCCCHHHHHHHHHHHHHhccCCCCC
Q psy9621         202 TSAKANINIEKAFIELATAIYDKTSGRDP  230 (253)
Q Consensus       202 ~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~  230 (253)
                      ||+.+|.|.+++|..+-..+.+......|
T Consensus       244 VSs~tG~G~ddf~~av~~~vdEy~~~ykp  272 (366)
T KOG1532|consen  244 VSSVTGEGFDDFFTAVDESVDEYEEEYKP  272 (366)
T ss_pred             EecccCCcHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999998888777665544

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.52  E-value=4.5e-13  Score=107.95  Aligned_cols=206  Identities=18%  Similarity=0.145  Sum_probs=117.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc-------cchhhh
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT-------ITTSYY   79 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~   79 (253)
                      .-...++++|.|++|||||++++.+.......-+..  +..+..-.+..+..++++.|+||.-+-..       ..-...
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FT--Tl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~  138 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFT--TLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA  138 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCce--ecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee
Confidence            445689999999999999999999854433211100  11111112334567899999998543211       123457


Q ss_pred             cCccEEEEEEeCCChhh-HHHHHHHHHHHHHhcccccceeEEeeeecccccc-------------cccccccccccccee
Q psy9621          80 RGAMGIMLVYDITNEKS-FDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE-------------RFHTITTSYYRGAMG  145 (253)
Q Consensus        80 ~~~d~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~-------------~~~~~~~~~~~~~~~  145 (253)
                      ++||++|+|+|+..... .+.+.+.+...--...+..|-+.+ .|.+..+-+             ....+...|....+.
T Consensus       139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I-~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~  217 (365)
T COG1163         139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTI-KKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNAD  217 (365)
T ss_pred             ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEE-EEeccCCEEEecccccccCCHHHHHHHHHHhCcccce
Confidence            89999999999997665 445544444432222233443333 333332222             122222335556666


Q ss_pred             eEEEEeccCccchhhHHH---HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         146 IMLVYDITNEKSFDNILK---WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                      +++.-+++.++-.+.+..   |...+..... -+.     ...++...+.+..  ..+.+||..+.|+++|.+.|.+.+-
T Consensus       218 V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NK-iD~-----~~~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         218 VLIREDVTLDDLIDALEGNRVYKPALYVVNK-IDL-----PGLEELERLARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             EEEecCCcHHHHHHHHhhcceeeeeEEEEec-ccc-----cCHHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence            677777665544444322   2122211111 111     2333444444444  7899999999999999999999874


Q ss_pred             h
Q psy9621         223 D  223 (253)
Q Consensus       223 ~  223 (253)
                      -
T Consensus       290 l  290 (365)
T COG1163         290 L  290 (365)
T ss_pred             e
Confidence            4

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=1.7e-13  Score=113.90  Aligned_cols=186  Identities=19%  Similarity=0.223  Sum_probs=114.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCC--CCC----------------------c-----ccCccceeeEEEEEeeCCeEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDA--FNT----------------------T-----FISTIGIDFKIKTVDLKGKKI   58 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~--~~~----------------------~-----~~~~~~~~~~~~~~~~~~~~~   58 (253)
                      +.++++|+|+..+|||||+-+|+...  ++.                      .     ..+--|++.......+.....
T Consensus         6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~   85 (428)
T COG5256           6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY   85 (428)
T ss_pred             CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence            57899999999999999999987422  110                      0     001124555555555565667


Q ss_pred             EEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhh---HH--HHHHHHHHHHHhcccccceeEEeeeeccccccccc
Q psy9621          59 KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS---FD--NILKWLRNIDEHANEDVEKMILGKTKDTAGQERFH  133 (253)
Q Consensus        59 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~--~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~  133 (253)
                      .+.|+|+||+..|..-.-.-..++|++|||+|+.+.+.   |.  ...+....+.+.. .--.++++.||+|+..     
T Consensus        86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD~v~-----  159 (428)
T COG5256          86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMDLVS-----  159 (428)
T ss_pred             eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEcccccc-----
Confidence            89999999988876555556789999999999987641   11  1111111121211 2346778899999871     


Q ss_pred             cccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-----CceEEeeccCCC
Q psy9621         134 TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-----VRFMETSAKANI  208 (253)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~  208 (253)
                                         =+++.|+++                      . .+...+.+..|     ++|+++|+..|.
T Consensus       160 -------------------wde~rf~ei----------------------~-~~v~~l~k~~G~~~~~v~FIPiSg~~G~  197 (428)
T COG5256         160 -------------------WDEERFEEI----------------------V-SEVSKLLKMVGYNPKDVPFIPISGFKGD  197 (428)
T ss_pred             -------------------cCHHHHHHH----------------------H-HHHHHHHHHcCCCccCCeEEecccccCC
Confidence                               011112221                      1 12223444444     679999999999


Q ss_pred             CHHHHH--------HHHHHHHHhccCCCCCCCCCCeEeecC
Q psy9621         209 NIEKAF--------IELATAIYDKTSGRDPLEAPDRVTIDK  241 (253)
Q Consensus       209 gi~~l~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~  241 (253)
                      |+.+--        ..|..++-.-....++.+.|-++.|+.
T Consensus       198 Nl~~~s~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~  238 (428)
T COG5256         198 NLTKKSENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQD  238 (428)
T ss_pred             cccccCcCCcCccCChHHHHHhccCCCCCCCCCCeEeEeee
Confidence            976532        135555555555555666676766653

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.51  E-value=5.5e-13  Score=115.48  Aligned_cols=204  Identities=16%  Similarity=0.268  Sum_probs=126.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC--CeEEEEEEEeCCCcccccccchhhhcCc---
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK--GKKIKLQIWDTAGQERFHTITTSYYRGA---   82 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---   82 (253)
                      ..-.|+|+|..++|||||+.+|.+.   +.+.++.+.+|....+.-.  +...++.+|-..|...+..+....+...   
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~  100 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP  100 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence            3458999999999999999998753   3456777888877665332  2345789999998777777777666542   


Q ss_pred             -cEEEEEEeCCChhh-HHHHHHHHHHHHHhcccccceeEEeeeecccccccc----------------------------
Q psy9621          83 -MGIMLVYDITNEKS-FDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERF----------------------------  132 (253)
Q Consensus        83 -d~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~----------------------------  132 (253)
                       -.+|||.|++.|.. ++.+.+|+..++.+... +.+  -..+.+...++-.                            
T Consensus       101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~-L~~--~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~  177 (472)
T PF05783_consen  101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEK-LKS--DPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS  177 (472)
T ss_pred             ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHH-hhc--cHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence             36788999999976 55677888777666521 000  0000000000000                            


Q ss_pred             --c-cc---cccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccC
Q psy9621         133 --H-TI---TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKA  206 (253)
Q Consensus       133 --~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  206 (253)
                        + ..   .+-......|+.+..-++..+.+..+..-.+.-.    +...     +.....+.+|.++|..+|.||++.
T Consensus       178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~----e~~D-----fIqq~LR~~cL~yGAsL~yts~~~  248 (472)
T PF05783_consen  178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKE----EHFD-----FIQQYLRTFCLKYGASLIYTSVKE  248 (472)
T ss_pred             ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccch----hhHH-----HHHHHHHHHHHhcCCeEEEeeccc
Confidence              0 00   0001112223444444455444444322111001    1111     455678999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccC
Q psy9621         207 NINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       207 ~~gi~~l~~~l~~~~~~~~~  226 (253)
                      ..+++.|+..|...+.....
T Consensus       249 ~~n~~~L~~yi~h~l~~~~f  268 (472)
T PF05783_consen  249 EKNLDLLYKYILHRLYGFPF  268 (472)
T ss_pred             cccHHHHHHHHHHHhccCCC
Confidence            99999999998888776444

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.50  E-value=2.9e-14  Score=102.70  Aligned_cols=89  Identities=25%  Similarity=0.315  Sum_probs=70.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCccc-CccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFI-STIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      +||+++|+.|+|||+|+.++....+...+. ++.+                           +......+.+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999998777765544 4443                           222333456788999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      |+.+++.+++.+  |...+....+.++|.++++||.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~   90 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLE   90 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhH
Confidence            999999998776  8777766666789999999999974

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG1191|consensus

Probab=99.49  E-value=2.1e-13  Score=115.26  Aligned_cols=169  Identities=16%  Similarity=0.126  Sum_probs=106.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc---------cccchh
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF---------HTITTS   77 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~   77 (253)
                      +..++|+++|.||||||||+|.|.+...... .|.-|.+.......++...+.+.+.||+|-.+-         ....+.
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIV-Spv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIV-SPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEe-CCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence            4568999999999999999999997655433 344455555455555555577999999996541         111234


Q ss_pred             hhcCccEEEEEEeCC--ChhhHHHHHHHHHHHHHhcc------cccceeEEeeeeccccccccccccccccccceeeEEE
Q psy9621          78 YYRGAMGIMLVYDIT--NEKSFDNILKWLRNIDEHAN------EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLV  149 (253)
Q Consensus        78 ~~~~~d~~ilv~d~~--~~~s~~~~~~~~~~i~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  149 (253)
                      .+..+|++++|+|+.  +-++-..+...++.......      ..-|++++.||+|+...                    
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~--------------------  404 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK--------------------  404 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc--------------------
Confidence            567899999999983  22222222344444322221      33789999999999721                    


Q ss_pred             EeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHH-HHhC-C-ceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         150 YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIA-REYG-V-RFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                               .++     .......... .-++ . .+.++|+++++|++.|.+.+...+...-.
T Consensus       405 -------------------------~~~-----~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  405 -------------------------IPE-----MTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             -------------------------ccc-----ccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence                                     011     1110000011 1122 3 34569999999999999999998877443

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.48  E-value=1.7e-12  Score=110.97  Aligned_cols=83  Identities=17%  Similarity=0.291  Sum_probs=56.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCC-cc-----cCccceeeEEEEE---------------eeC-CeEEEEEEEeCCC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNT-TF-----ISTIGIDFKIKTV---------------DLK-GKKIKLQIWDTAG   67 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~-~~-----~~~~~~~~~~~~~---------------~~~-~~~~~~~l~Dt~G   67 (253)
                      ++|+++|.||||||||+++|.+..+.. .|     .|+.|+.+....+               ..+ .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            589999999999999999999876543 22     2334432211100               011 1236789999999


Q ss_pred             c----ccccccchhh---hcCccEEEEEEeCC
Q psy9621          68 Q----ERFHTITTSY---YRGAMGIMLVYDIT   92 (253)
Q Consensus        68 ~----~~~~~~~~~~---~~~~d~~ilv~d~~   92 (253)
                      .    +...++...+   ++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            5    3445555566   88999999999997

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.46  E-value=1.5e-12  Score=121.78  Aligned_cols=100  Identities=19%  Similarity=0.122  Sum_probs=66.6

Q ss_pred             cHHHHHHHhhcCCCCCcccC----ccceeeEEEEE------------eeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621          21 GKTCVLFRFSDDAFNTTFIS----TIGIDFKIKTV------------DLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus        21 GKStL~~~l~~~~~~~~~~~----~~~~~~~~~~~------------~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      +||||+.++.+......-..    -+|..+.+...            ........+.+|||||++.|..++...+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            39999999998766543222    22322111100            000111248999999999998888888889999


Q ss_pred             EEEEEeCCC---hhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          85 IMLVYDITN---EKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        85 ~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      +++|+|+++   +.+++.+..    +..   .++|+++++||+|+.
T Consensus       553 vlLVVDa~~Gi~~qT~e~I~~----lk~---~~iPiIVViNKiDL~  591 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAINI----LRQ---YKTPFVVAANKIDLI  591 (1049)
T ss_pred             EEEEEECcccCCHhHHHHHHH----HHH---cCCCEEEEEECCCCc
Confidence            999999986   444444332    221   368999999999985

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.45  E-value=3.1e-13  Score=124.25  Aligned_cols=120  Identities=16%  Similarity=0.124  Sum_probs=83.3

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcC---------------CCCCc---ccCccceeeEEEEEeeCCeEEEEEEEeCCC
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDD---------------AFNTT---FISTIGIDFKIKTVDLKGKKIKLQIWDTAG   67 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   67 (253)
                      .+...||+++|+.++|||||+++|+..               .+...   .-.|+........+.+.+....+.+|||||
T Consensus        16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG   95 (720)
T TIGR00490        16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG   95 (720)
T ss_pred             cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence            456789999999999999999999742               11111   111222222222334566778899999999


Q ss_pred             cccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccc
Q psy9621          68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ  129 (253)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  129 (253)
                      +..|......+++.+|++|+|+|+......+....|.. .   ...++|.++++||+|....
T Consensus        96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~---~~~~~p~ivviNKiD~~~~  153 (720)
T TIGR00490        96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-A---LKENVKPVLFINKVDRLIN  153 (720)
T ss_pred             ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-H---HHcCCCEEEEEEChhcccc
Confidence            99998888889999999999999887433222222221 1   1246788999999998754

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK13768 GTPase; Provisional

Probab=99.44  E-value=7.7e-13  Score=106.99  Aligned_cols=136  Identities=15%  Similarity=0.189  Sum_probs=75.9

Q ss_pred             EEEEEeCCCcccc---cccchhhhcC-----ccEEEEEEeCCChhhHHHHH--HHHHHHHHhcccccceeEEeeeecccc
Q psy9621          59 KLQIWDTAGQERF---HTITTSYYRG-----AMGIMLVYDITNEKSFDNIL--KWLRNIDEHANEDVEKMILGKTKDTAG  128 (253)
Q Consensus        59 ~~~l~Dt~G~~~~---~~~~~~~~~~-----~d~~ilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~p~iiv~nK~D~~~  128 (253)
                      .+.+||+||+.+.   ......+++.     .+++++++|+....+.....  .|+... .....++|+++|+||+|+..
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~-~~~~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALS-VQLRLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHH-HHHHcCCCEEEEEEhHhhcC
Confidence            6899999998663   3333333332     88999999996543322221  222221 11125799999999999873


Q ss_pred             ccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHH---HHHhC--CceEEee
Q psy9621         129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAI---AREYG--VRFMETS  203 (253)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~S  203 (253)
                      .                          ...+....++.........-.....  ......+++   .+..+  .+++++|
T Consensus       177 ~--------------------------~~~~~~~~~l~~~~~~~~~l~~~~~--~~~~~~~~~~~~i~~~~~~~~vi~iS  228 (253)
T PRK13768        177 E--------------------------EELERILKWLEDPEYLLEELKLEKG--LQGLLSLELLRALEETGLPVRVIPVS  228 (253)
T ss_pred             c--------------------------hhHHHHHHHHhCHHHHHHHHhcccc--hHHHHHHHHHHHHHHHCCCCcEEEEE
Confidence            2                          2222233332210000000000000  001222223   23344  5899999


Q ss_pred             ccCCCCHHHHHHHHHHHHHh
Q psy9621         204 AKANINIEKAFIELATAIYD  223 (253)
Q Consensus       204 a~~~~gi~~l~~~l~~~~~~  223 (253)
                      ++++.|+++++++|.+.+..
T Consensus       229 a~~~~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        229 AKTGEGFDELYAAIQEVFCG  248 (253)
T ss_pred             CCCCcCHHHHHHHHHHHcCC
Confidence            99999999999999887754

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.43  E-value=3.4e-12  Score=103.25  Aligned_cols=158  Identities=18%  Similarity=0.213  Sum_probs=104.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCc--ccCccceeeEEEEEeeCCeEEEEEEEeCCCccc--ccccc------hh
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTT--FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER--FHTIT------TS   77 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~------~~   77 (253)
                      ....|+|.|.||||||||+++++..+....  +-.|-++...    .+..+...++++||||.-+  ...+.      -.
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG----hfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~  242 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG----HFERGYLRIQVIDTPGLLDRPLEERNEIERQAIL  242 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe----eeecCCceEEEecCCcccCCChHHhcHHHHHHHH
Confidence            356899999999999999999998765433  2223232222    1223345799999999521  11111      11


Q ss_pred             hh-cCccEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621          78 YY-RGAMGIMLVYDITNE--KSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN  154 (253)
Q Consensus        78 ~~-~~~d~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (253)
                      ++ .-.++++|+||.+..  -+.+....+++++...+  +.|+++|.||+|+...                         
T Consensus       243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~-------------------------  295 (346)
T COG1084         243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADE-------------------------  295 (346)
T ss_pred             HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccch-------------------------
Confidence            22 346788889998864  45777778999998887  3899999999998621                         


Q ss_pred             ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHH-HHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA-IAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                           .       ..++... +....+.....+++..+.+++.+-..+.....+.
T Consensus       296 ---------------------e-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         296 ---------------------E-------KLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             ---------------------h-------HHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhch
Confidence                                 1       1111222 2223334578889999999998888887775543

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.43  E-value=3.2e-13  Score=107.87  Aligned_cols=129  Identities=21%  Similarity=0.274  Sum_probs=68.0

Q ss_pred             EEEEEeCCCcccccccchhhh--------cCccEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          59 KLQIWDTAGQERFHTITTSYY--------RGAMGIMLVYDITN---EKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        59 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .+.++|||||.++...+....        ...-++++++|...   +..|-.  .++..+.-....+.|++.|.||+|+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~Dl~  169 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKIDLL  169 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccCcc
Confidence            689999999987644443322        34457788888654   333333  33333333333579999999999997


Q ss_pred             cccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh---C-C-ceEEe
Q psy9621         128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY---G-V-RFMET  202 (253)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~~  202 (253)
                      .+                           ..+...+|..+..........     ......+++++-.   + + .++.+
T Consensus       170 ~~---------------------------~~~~~l~~~~d~~~l~~~~~~-----~~~~l~~~i~~~l~~~~~~~~f~pl  217 (238)
T PF03029_consen  170 SK---------------------------YLEFILEWFEDPDSLEDLLES-----DYKKLNEEIAELLDDFGLVIRFIPL  217 (238)
T ss_dssp             -H---------------------------HHHHHHHHHHSHHHHHHHHHT------HHHHHHHHHHHCCCCSSS---EE-
T ss_pred             cc---------------------------hhHHHHHHhcChHHHHHHHHH-----HHHHHHHHHHHHHhhcCCCceEEEE
Confidence            32                           134455555543333211100     0122233333333   3 4 89999


Q ss_pred             eccCCCCHHHHHHHHHHHH
Q psy9621         203 SAKANINIEKAFIELATAI  221 (253)
Q Consensus       203 Sa~~~~gi~~l~~~l~~~~  221 (253)
                      |+.+++|+++++..+-+.+
T Consensus       218 s~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  218 SSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             BTTTTTTHHHHHHHHHHHH
T ss_pred             ECCChHHHHHHHHHHHHHh
Confidence            9999999999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK09866 hypothetical protein; Provisional

Probab=99.40  E-value=1.2e-11  Score=108.98  Aligned_cols=68  Identities=21%  Similarity=0.197  Sum_probs=45.5

Q ss_pred             EEEEEEeCCCcccc-----cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          58 IKLQIWDTAGQERF-----HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~-----~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .++.++||||-..-     .......+..+|++++|+|.+...+... ......+.+. +...|+++|+||+|+.
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~  302 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQ  302 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCC
Confidence            35789999997542     1123447899999999999987543333 2233333332 2236999999999985

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=1.2e-11  Score=111.81  Aligned_cols=218  Identities=13%  Similarity=0.065  Sum_probs=133.8

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcC--CCCC--ccc------------CccceeeEEEEEeeCCe-EEEEEEEeCCCc
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDD--AFNT--TFI------------STIGIDFKIKTVDLKGK-KIKLQIWDTAGQ   68 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~--~~~~--~~~------------~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~   68 (253)
                      .+...||.++|+-++|||||..+++..  ....  ..+            ..-|++..........+ ...++++|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            667899999999999999999998731  1110  000            11244444444444444 588999999999


Q ss_pred             ccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccccccccc-ceeeE
Q psy9621          69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRG-AMGIM  147 (253)
Q Consensus        69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~  147 (253)
                      -+|.......++-+|++++|+|+...-..+.-.-|.+..    ..++|.+++.||+|..+.+-.....+...+. .....
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~  162 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVP  162 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECccccccChhhhHHHHHHHhCCCcee
Confidence            999999999999999999999998876555555564443    3579999999999999886544433321110 00111


Q ss_pred             ----------------------EEEe-cc-------CccchhhHHHHHHhhhhhcCCCchhhhhh------ccchhHHHH
Q psy9621         148 ----------------------LVYD-IT-------NEKSFDNILKWLRNIDEHANEDPQVVNSW------VCKHRGEAI  191 (253)
Q Consensus       148 ----------------------~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  191 (253)
                                            ..|+ .+       ..+......+|...+.+...+..+.....      ...++....
T Consensus       163 v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~  242 (697)
T COG0480         163 VQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKA  242 (697)
T ss_pred             eeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHH
Confidence                                  1111 00       01112222344444444333322211111      111111111


Q ss_pred             HHH----h-CCceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621         192 ARE----Y-GVRFMETSAKANINIEKAFIELATAIYDKTSG  227 (253)
Q Consensus       192 ~~~----~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  227 (253)
                      .+.    . -+|.+.-||..+.|+..+++.+++.+..-...
T Consensus       243 i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~  283 (697)
T COG0480         243 LRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDV  283 (697)
T ss_pred             HHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhc
Confidence            111    1 26889999999999999999999999875433

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=5.9e-12  Score=105.18  Aligned_cols=127  Identities=15%  Similarity=0.165  Sum_probs=92.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc--CCCC----------C--------cccCccceeeEEEEEeeCCeEEEEEEEeCC
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD--DAFN----------T--------TFISTIGIDFKIKTVDLKGKKIKLQIWDTA   66 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~--~~~~----------~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   66 (253)
                      .....-++|-+|.+|||||..+++.  +...          .        .....-|++.....++++.....+++.|||
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP   89 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP   89 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence            3456789999999999999999862  1110          0        011233778888888888888999999999


Q ss_pred             CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccc
Q psy9621          67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITT  137 (253)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  137 (253)
                      ||+.|..-.-.-+..+|.+++|+|+...  .+.-..-+-++.+.  .++||+-+.||.|..+..-.|.+.+
T Consensus        90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl--R~iPI~TFiNKlDR~~rdP~ELLdE  156 (528)
T COG4108          90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL--RDIPIFTFINKLDREGRDPLELLDE  156 (528)
T ss_pred             CccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh--cCCceEEEeeccccccCChHHHHHH
Confidence            9999987777778899999999998654  23322222233333  5999999999999987765444443

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.36  E-value=4.4e-12  Score=102.03  Aligned_cols=96  Identities=19%  Similarity=0.261  Sum_probs=77.1

Q ss_pred             ccccccchhhhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeE
Q psy9621          69 ERFHTITTSYYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIM  147 (253)
Q Consensus        69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (253)
                      +++..+.+.+++++|.+++|||++++. ++..+.+|+..+..   .++|+++|+||+|+.                    
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~--------------------   80 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLL--------------------   80 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccC--------------------
Confidence            567888888999999999999999887 89999999987653   579999999999996                    


Q ss_pred             EEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621         148 LVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                                                ....     ...+....+ +.++++++++||++|.|++++|+.+..
T Consensus        81 --------------------------~~~~-----~~~~~~~~~-~~~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        81 --------------------------DDED-----MEKEQLDIY-RNIGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             --------------------------CCHH-----HHHHHHHHH-HHCCCeEEEEecCCchhHHHHHhhhcC
Confidence                                      2222     222333334 357899999999999999999988763

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.35  E-value=2e-11  Score=98.20  Aligned_cols=121  Identities=17%  Similarity=0.257  Sum_probs=72.4

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcc-cCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc---c------
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTF-ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT---I------   74 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~------   74 (253)
                      ..+..++|+|+|.+|||||||+|.+++....... .+..............  ...+.+|||||..+...   .      
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~--g~~i~vIDTPGl~~~~~~~~~~~~~~~  104 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD--GFKLNIIDTPGLLESVMDQRVNRKILS  104 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--CeEEEEEECCCcCcchhhHHHHHHHHH
Confidence            4567899999999999999999999986643321 1111111221222223  35689999999765421   1      


Q ss_pred             -chhhhc--CccEEEEEEeCCChh-hHHHHHHHHHHHHHhccc--ccceeEEeeeecccc
Q psy9621          75 -TTSYYR--GAMGIMLVYDITNEK-SFDNILKWLRNIDEHANE--DVEKMILGKTKDTAG  128 (253)
Q Consensus        75 -~~~~~~--~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~--~~p~iiv~nK~D~~~  128 (253)
                       ...++.  ..+++++|..++... +... ...++.+...++.  -.++++|.||.|...
T Consensus       105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             HHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence             122332  577888887666432 2221 2344444433322  257999999999863

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>cd00066 G-alpha G protein alpha subunit

Probab=99.34  E-value=2.2e-11  Score=101.67  Aligned_cols=141  Identities=16%  Similarity=0.226  Sum_probs=91.4

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcc-cccceeEEeeeec
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNE----------KSFDNILKWLRNIDEHAN-EDVEKMILGKTKD  125 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D  125 (253)
                      ...+.+||++|+...+..|..++.+++++|+|+|+++.          ..+......+..+..... .+.|+++++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            56789999999999999999999999999999999874          334444455555544322 6799999999999


Q ss_pred             ccccccccc-ccccccccceeeEEEEeccC-ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH--HhCCceEE
Q psy9621         126 TAGQERFHT-ITTSYYRGAMGIMLVYDITN-EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR--EYGVRFME  201 (253)
Q Consensus       126 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  201 (253)
                      +..+..... +...+.          +-.. ...++....|...                   ....+..  ...+-...
T Consensus       240 ~f~~ki~~~~l~~~fp----------~y~g~~~~~~~~~~~i~~-------------------~F~~~~~~~~~~~~~~~  290 (317)
T cd00066         240 LFEEKIKKSPLTDYFP----------DYTGPPNDYEEAAKFIRK-------------------KFLDLNRNPNKEIYPHF  290 (317)
T ss_pred             HHHHhhcCCCccccCC----------CCCCCCCCHHHHHHHHHH-------------------HHHHhhcCCCCeEEEEe
Confidence            875543211 100000          0000 1233333333321                   1111111  12355577


Q ss_pred             eeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         202 TSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       202 ~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                      ++|.+-.+++.+|+.+...+..+..
T Consensus       291 t~a~Dt~~i~~vf~~v~~~i~~~~l  315 (317)
T cd00066         291 TCATDTENIRFVFDAVKDIILQNNL  315 (317)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998887653

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.34  E-value=2.7e-11  Score=95.55  Aligned_cols=168  Identities=14%  Similarity=0.202  Sum_probs=91.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccce--eeEEEEEeeCCeEEEEEEEeCCCccccccc-----------ch
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGI--DFKIKTVDLKGKKIKLQIWDTAGQERFHTI-----------TT   76 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~~   76 (253)
                      ++|+|+|.+|+||||++|.+++.............  ........+.+  ..+.++||||..+-...           ..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            58999999999999999999987765443221111  22222334444  55899999995322111           11


Q ss_pred             hhhcCccEEEEEEeCCChhhHHH--HHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621          77 SYYRGAMGIMLVYDITNEKSFDN--ILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN  154 (253)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (253)
                      ...++.+++++|+.++ +-+-..  +..++..++... --.-++|+.+..|......                       
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~-----------------------  133 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDS-----------------------  133 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTT-----------------------
T ss_pred             hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHH-HHhHhhHHhhhcccccccc-----------------------
Confidence            2346799999999988 333222  223333333321 1235777778877652211                       


Q ss_pred             ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeecc------CCCCHHHHHHHHHHHHHhcc
Q psy9621         155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAK------ANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~------~~~gi~~l~~~l~~~~~~~~  225 (253)
                         +++..+                  .......+++.+..+-.++..+.+      ....+.+|+..+-.++.++.
T Consensus       134 ---~~~~l~------------------~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  134 ---LEDYLK------------------KESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             ---HHHHHH------------------HHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ---HHHHHh------------------ccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence               111100                  001123556666667666666665      23457788888877777654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.33  E-value=4.9e-12  Score=118.06  Aligned_cols=119  Identities=15%  Similarity=0.148  Sum_probs=82.3

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCC--C---------cccC---ccceeeEEE--EEee--------------C
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFN--T---------TFIS---TIGIDFKIK--TVDL--------------K   54 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~--~---------~~~~---~~~~~~~~~--~~~~--------------~   54 (253)
                      ..+...||+|+|+.++|||||+.+|+...-.  .         ++.+   .-|+++...  .+.+              .
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            4567889999999999999999999743210  0         0000   012222211  1211              1


Q ss_pred             CeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          55 GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .....+.++||||+.+|.......++.+|++|+|+|+...-.......|.+. .   ..++|+++++||+|..
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~-~---~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-L---GERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHH-H---HCCCCEEEEEECCccc
Confidence            2356789999999999988888889999999999999876544443334332 2   2578999999999998

>TIGR00101 ureG urease accessory protein UreG

Probab=99.33  E-value=1.9e-11  Score=95.22  Aligned_cols=28  Identities=11%  Similarity=0.012  Sum_probs=24.4

Q ss_pred             hCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         195 YGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       195 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                      .+.++++|||++|+|++++|++|.+...
T Consensus       169 ~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       169 GEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            3489999999999999999999986543

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG1707|consensus

Probab=99.31  E-value=7.9e-11  Score=101.66  Aligned_cols=166  Identities=19%  Similarity=0.283  Sum_probs=123.2

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      .....-+.+.|+|+.++|||.|++.++++.+......+....+....+.+.+....+.+-|.+-. ....+...- ..||
T Consensus       420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD  497 (625)
T KOG1707|consen  420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD  497 (625)
T ss_pred             cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence            34566789999999999999999999998888776666666677777777777778888888754 333333222 7899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ++.++||.+++.+|..+...++.-...  ..+|.++|+.|+|+..                                   
T Consensus       498 v~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe-----------------------------------  540 (625)
T KOG1707|consen  498 VACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDE-----------------------------------  540 (625)
T ss_pred             eEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccch-----------------------------------
Confidence            999999999999999988766554333  6899999999999973                                   


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                 ..+.    ...+. .+++.++++ +-+..|.++.-. .++|..|..+...-.
T Consensus       541 -----------~~Q~----~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  541 -----------VPQR----YSIQP-DEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQYPH  586 (625)
T ss_pred             -----------hhhc----cCCCh-HHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCCC
Confidence                       2221    12222 889999996 445566664223 889999888776644

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.31  E-value=2.6e-11  Score=99.17  Aligned_cols=120  Identities=14%  Similarity=0.121  Sum_probs=71.6

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc-ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc-------hh
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT-FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT-------TS   77 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~   77 (253)
                      ....++|+++|.+|+||||++|++++...... ...+.+..........  ....+.+|||||..+.....       ..
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~ik~  112 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR--AGFTLNIIDTPGLIEGGYINDQAVNIIKR  112 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence            45688999999999999999999998664321 1112122221222222  34679999999976542221       11


Q ss_pred             hh--cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccc
Q psy9621          78 YY--RGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTA  127 (253)
Q Consensus        78 ~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~  127 (253)
                      ++  .+.|++++|.+++....-..-...++.+...++  --.+.+++.++.|..
T Consensus       113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~  166 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS  166 (313)
T ss_pred             HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence            22  268999999766532111121233444444332  235789999999965

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.30  E-value=3.9e-11  Score=97.84  Aligned_cols=155  Identities=20%  Similarity=0.146  Sum_probs=100.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCC----------c---------------------ccCccceeeEEEEEeeCC
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT----------T---------------------FISTIGIDFKIKTVDLKG   55 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~----------~---------------------~~~~~~~~~~~~~~~~~~   55 (253)
                      ...+|.+..|+..=|||||+-||+...-..          .                     .....|++...-...+.-
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            457899999999999999999997422100          0                     001113333333333444


Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccc
Q psy9621          56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTI  135 (253)
Q Consensus        56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~  135 (253)
                      ...+|.+-|||||++|..-.---..-||++|+++|+  +..+....+-...|.... .=..++++.||+||.        
T Consensus        84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA--R~Gvl~QTrRHs~I~sLL-GIrhvvvAVNKmDLv--------  152 (431)
T COG2895          84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA--RKGVLEQTRRHSFIASLL-GIRHVVVAVNKMDLV--------  152 (431)
T ss_pred             ccceEEEecCCcHHHHhhhhhcccccccEEEEEEec--chhhHHHhHHHHHHHHHh-CCcEEEEEEeeeccc--------
Confidence            556799999999999965444445679999999998  444444333333333332 234678889999997        


Q ss_pred             cccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC---CceEEeeccCCCCHH
Q psy9621         136 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG---VRFMETSAKANINIE  211 (253)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~  211 (253)
                                                            ...+.... -...+...|+++++   ..+++.||..|+||-
T Consensus       153 --------------------------------------dy~e~~F~-~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         153 --------------------------------------DYSEEVFE-AIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             --------------------------------------ccCHHHHH-HHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence                                                  22221111 23345678888887   588999999999974

>PTZ00416 elongation factor 2; Provisional

Probab=99.29  E-value=1.1e-11  Score=115.58  Aligned_cols=118  Identities=17%  Similarity=0.171  Sum_probs=80.2

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCC--CC---------cccC---ccceeeE--EEEEeeC--------CeEEEEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAF--NT---------TFIS---TIGIDFK--IKTVDLK--------GKKIKLQ   61 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~--~~---------~~~~---~~~~~~~--~~~~~~~--------~~~~~~~   61 (253)
                      .+...||+++|+.++|||||+++|+...-  ..         ++.+   .-|++..  ...+.+.        ++...+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            46678999999999999999999985211  00         0000   0112221  1122222        2256799


Q ss_pred             EEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        62 l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ++||||+.+|.......++.+|++|+|+|++..-.......| ..+..   .++|++++.||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEEChhhh
Confidence            999999999988788889999999999999876443333333 22222   468999999999998

>KOG1490|consensus

Probab=99.27  E-value=1.8e-11  Score=103.87  Aligned_cols=165  Identities=16%  Similarity=0.129  Sum_probs=108.0

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEee---CCeEEEEEEEeCCCcccc----cccch--
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDL---KGKKIKLQIWDTAGQERF----HTITT--   76 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~----~~~~~--   76 (253)
                      ......++|+|-|+||||||++.+........+-+     ++++.+-+   ..+-..++++||||.-..    .+...  
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYa-----FTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmq  239 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYA-----FTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQ  239 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhcccccccccccCCcc-----cccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHH
Confidence            34567899999999999999999886554322111     11111111   223356899999996321    11111  


Q ss_pred             ---hhhcCccEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEe
Q psy9621          77 ---SYYRGAMGIMLVYDITNE--KSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYD  151 (253)
Q Consensus        77 ---~~~~~~d~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (253)
                         ....--.+++++.|++..  -|.+....+++.|...+ .+.|.|+|+||+|+-+.+..                   
T Consensus       240 sITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL-------------------  299 (620)
T KOG1490|consen  240 IITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDL-------------------  299 (620)
T ss_pred             HHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCcccc-------------------
Confidence               122334567788898864  46777778999998888 78999999999998743221                   


Q ss_pred             ccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         152 ITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                              .+     -..+..+.+....+++++++|+.+.+||.++-......++..
T Consensus       300 ------------------------~~-----~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~  343 (620)
T KOG1490|consen  300 ------------------------DQ-----KNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAA  343 (620)
T ss_pred             ------------------------CH-----HHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHH
Confidence                                    00     112233444445569999999999999998777766655443

>smart00275 G_alpha G protein alpha subunit

Probab=99.26  E-value=7.3e-11  Score=99.35  Aligned_cols=140  Identities=11%  Similarity=0.157  Sum_probs=90.7

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCCh----------hhHHHHHHHHHHHHHhc-ccccceeEEeeeec
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNE----------KSFDNILKWLRNIDEHA-NEDVEKMILGKTKD  125 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D  125 (253)
                      ...+.+||.+|+...+..|..++.+++++|||+|+++.          ..+......++.+.... -.+.|+++++||.|
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D  262 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID  262 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence            45689999999999999999999999999999999973          23555555555554432 26799999999999


Q ss_pred             cccccccccc-cccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH---HhCCceEE
Q psy9621         126 TAGQERFHTI-TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR---EYGVRFME  201 (253)
Q Consensus       126 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  201 (253)
                      +........- ...+....          ....++.+..++..--.                   ....   ...+-...
T Consensus       263 ~~~~Kl~~~~l~~~fp~y~----------g~~~~~~~~~yi~~~F~-------------------~~~~~~~~r~~y~h~  313 (342)
T smart00275      263 LFEEKIKKVPLVDYFPDYK----------GPNDYEAAAKFIKQKFL-------------------RLNRNSSRKSIYHHF  313 (342)
T ss_pred             hHHHHhCCCchhccCCCCC----------CCCCHHHHHHHHHHHHH-------------------HhccCCCCceEEEEE
Confidence            9855432211 11111100          01234444333332111                   1111   12255578


Q ss_pred             eeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         202 TSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       202 ~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                      |+|.+-.++..+|+.+...+..+.
T Consensus       314 t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      314 TCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             eeecccHHHHHHHHHHHHHHHHHH
Confidence            889999999999999888887755

Subunit of G proteins that contains the guanine nucleotide binding site

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.25  E-value=1.3e-10  Score=91.36  Aligned_cols=24  Identities=13%  Similarity=0.068  Sum_probs=22.4

Q ss_pred             CceEEeeccCCCCHHHHHHHHHHH
Q psy9621         197 VRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       197 ~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                      .+++++||++|.|++++++++.+.
T Consensus       182 ~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       182 AEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.25  E-value=1.6e-11  Score=85.35  Aligned_cols=137  Identities=23%  Similarity=0.207  Sum_probs=89.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc----cccccchhhhcCccEEE
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE----RFHTITTSYYRGAMGIM   86 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~~~~d~~i   86 (253)
                      |++++|..|+|||||++.+.+...  -+..|..++|       +.+    -.+||||.-    .+..........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~-------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEF-------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh--hhcccceeec-------cCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            799999999999999999987432  2233333222       221    246999842    11111122345788999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      +|-.++++++--.     ..+...  ...|+|-+.+|.|++                                       
T Consensus        70 ~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLa---------------------------------------  103 (148)
T COG4917          70 YVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLA---------------------------------------  103 (148)
T ss_pred             eeecccCccccCC-----cccccc--cccceEEEEeccccc---------------------------------------
Confidence            9999998864111     111111  346799999999998                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHH
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                             +.       -.....+++..+.| -++|++|+.++.|++++++.|...
T Consensus       104 -------ed-------~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~~  144 (148)
T COG4917         104 -------ED-------ADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLASL  144 (148)
T ss_pred             -------ch-------HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHhh
Confidence                   21       22234556666666 589999999999999999988653

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.23  E-value=4.1e-11  Score=110.56  Aligned_cols=119  Identities=19%  Similarity=0.154  Sum_probs=79.8

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCC--C---------cccC---ccceeeEE--EE--EeeCCeEEEEEEEeCCC
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFN--T---------TFIS---TIGIDFKI--KT--VDLKGKKIKLQIWDTAG   67 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~--~---------~~~~---~~~~~~~~--~~--~~~~~~~~~~~l~Dt~G   67 (253)
                      .+...||+++|+.++|||||+.+|+...-.  .         ++.+   .-+++...  ..  +...+....+.++||||
T Consensus        17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG   96 (731)
T PRK07560         17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG   96 (731)
T ss_pred             hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence            456789999999999999999999742111  0         0000   00111111  11  22344567899999999


Q ss_pred             cccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccc
Q psy9621          68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG  128 (253)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  128 (253)
                      +.+|.......++.+|++|+|+|+.....-.....|.. ...   .+.|.+++.||+|...
T Consensus        97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~---~~~~~iv~iNK~D~~~  153 (731)
T PRK07560         97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALR---ERVKPVLFINKVDRLI  153 (731)
T ss_pred             ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHH---cCCCeEEEEECchhhc
Confidence            99998888889999999999999887543333233322 222   3568899999999863

>PTZ00258 GTP-binding protein; Provisional

Probab=99.22  E-value=4.7e-10  Score=95.18  Aligned_cols=86  Identities=20%  Similarity=0.200  Sum_probs=54.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCe---------------EEEEEEEeCCCcccc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK---------------KIKLQIWDTAGQERF   71 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~   71 (253)
                      ...++|+++|.||||||||+|++.+........|....+...-.+.+.+.               ..++.++||||...-
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            45679999999999999999999876543322222222222222322221               235899999996432


Q ss_pred             ----cccchh---hhcCccEEEEEEeCC
Q psy9621          72 ----HTITTS---YYRGAMGIMLVYDIT   92 (253)
Q Consensus        72 ----~~~~~~---~~~~~d~~ilv~d~~   92 (253)
                          ..+...   .++.+|++++|+|..
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                222223   457899999999973

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.22  E-value=2.4e-10  Score=96.37  Aligned_cols=118  Identities=15%  Similarity=0.204  Sum_probs=85.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCC--CCC------------cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDA--FNT------------TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT   73 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   73 (253)
                      ...||+++-+..=|||||+..|+...  |..            ....--|++...+.-.+.++...++++|||||..|.+
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            46799999999999999999998532  211            1112235566555555666678899999999999999


Q ss_pred             cchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccc
Q psy9621          74 ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ  129 (253)
Q Consensus        74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  129 (253)
                      .....+.=.|++++++|+...- +..-+-.+..   ....+.+.|+|.||+|...+
T Consensus        84 EVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkK---Al~~gL~PIVVvNKiDrp~A  135 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGP-MPQTRFVLKK---ALALGLKPIVVINKIDRPDA  135 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCC-CCchhhhHHH---HHHcCCCcEEEEeCCCCCCC
Confidence            9999999999999999987632 2222222222   22356888888999998754

>KOG0461|consensus

Probab=99.19  E-value=5.8e-10  Score=90.81  Aligned_cols=120  Identities=17%  Similarity=0.208  Sum_probs=72.8

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcC----CCC---CcccCccceeeEEEEEee-------CCeEEEEEEEeCC
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDD----AFN---TTFISTIGIDFKIKTVDL-------KGKKIKLQIWDTA   66 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~----~~~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~   66 (253)
                      |+.-|.  .+|+.++|+-.+|||||..++..-    .|+   .+....+..|.....+.+       .+...++.++|+|
T Consensus         1 m~~~p~--n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCP   78 (522)
T KOG0461|consen    1 MTSPPS--NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCP   78 (522)
T ss_pred             CCCCCc--eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCC
Confidence            444444  489999999999999999998631    122   122222233333333332       2445788999999


Q ss_pred             CcccccccchhhhcCccEEEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccc
Q psy9621          67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      |+.......-....-.|..++|+|+.....-+..+ -.+-++.     -...++|.||+|..
T Consensus        79 GHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~l  135 (522)
T KOG0461|consen   79 GHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVL  135 (522)
T ss_pred             CcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccc
Confidence            98654433333344568899999998654333322 2222222     23567788999875

>KOG0458|consensus

Probab=99.16  E-value=4.1e-10  Score=97.33  Aligned_cols=118  Identities=16%  Similarity=0.124  Sum_probs=81.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCC-----------------------------cccCccceeeEEEEEeeCCeEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNT-----------------------------TFISTIGIDFKIKTVDLKGKKI   58 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   58 (253)
                      ..++++|+|+..+|||||+-+++..--..                             .-.+--|+++...+..++-...
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            57899999999999999999886411110                             0112235666666666666677


Q ss_pred             EEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHH------HHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          59 KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI------LKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        59 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~------~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .+.|+|+||+..|..-.-.-...+|++|+|+|++..+ |+.-      .+....+.+.. .--.++|+.||+|+.
T Consensus       256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~-FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V  328 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGE-FESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLV  328 (603)
T ss_pred             eEEEecCCCccccchhhhccccccceEEEEEECCcch-hhhccCCCCchHHHHHHHHHc-CcceEEEEeeccccc
Confidence            8999999998888766666678899999999988532 3331      12233333333 345788889999987

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=2.3e-10  Score=92.28  Aligned_cols=171  Identities=14%  Similarity=0.076  Sum_probs=106.6

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCC---CcccCccc--e-----------------eeEEEEEee-C----CeE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFN---TTFISTIG--I-----------------DFKIKTVDL-K----GKK   57 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~---~~~~~~~~--~-----------------~~~~~~~~~-~----~~~   57 (253)
                      ..+.++||.++|+-.=|||||..++.+-...   +.....+.  .                 .|....... .    .-.
T Consensus         6 ~~Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~   85 (415)
T COG5257           6 HIQPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELV   85 (415)
T ss_pred             cCCcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEE
Confidence            3478999999999999999999999752211   11011000  0                 011000000 0    113


Q ss_pred             EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccc
Q psy9621          58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITT  137 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  137 (253)
                      ..+.+.|.|||+-.-...-.-..-.|++++|+.++.+-....-++-+..+.-.  .-..++|+-||+|+...+.+     
T Consensus        86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~A-----  158 (415)
T COG5257          86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERA-----  158 (415)
T ss_pred             EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHH-----
Confidence            46889999999865443333334569999999998764433333433433322  24578999999999732111     


Q ss_pred             cccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh---CCceEEeeccCCCCHHHHH
Q psy9621         138 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY---GVRFMETSAKANINIEKAF  214 (253)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~  214 (253)
                                              .                    -..++..+|.+.-   +.|++++||..+.|||.|+
T Consensus       159 ------------------------l--------------------E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~  194 (415)
T COG5257         159 ------------------------L--------------------ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALI  194 (415)
T ss_pred             ------------------------H--------------------HHHHHHHHHhcccccCCCceeeehhhhccCHHHHH
Confidence                                    1                    1223344444433   4799999999999999999


Q ss_pred             HHHHHHHHhccC
Q psy9621         215 IELATAIYDKTS  226 (253)
Q Consensus       215 ~~l~~~~~~~~~  226 (253)
                      +.|.+.+..-..
T Consensus       195 e~i~~~IptP~r  206 (415)
T COG5257         195 EAIEKYIPTPER  206 (415)
T ss_pred             HHHHHhCCCCcc
Confidence            999999877443

>cd01882 BMS1 Bms1

Probab=99.14  E-value=1.1e-09  Score=87.24  Aligned_cols=109  Identities=17%  Similarity=0.195  Sum_probs=67.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      .....|+++|.+|+|||||++.+.............| .   .++. .....++.++||||..  .. .....+.+|+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~---i~i~-~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-P---ITVV-TGKKRRLTFIECPNDI--NA-MIDIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-c---EEEE-ecCCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence            4456799999999999999999886422111111112 1   1121 1245668999999853  22 223468899999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhccccccee-EEeeeeccc
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKM-ILGKTKDTA  127 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~D~~  127 (253)
                      +++|.+....... ...+..+..   .+.|.+ ++.||.|+.
T Consensus       109 lviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~  146 (225)
T cd01882         109 LLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLF  146 (225)
T ss_pred             EEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccC
Confidence            9999876543322 223333322   357754 599999986

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.14  E-value=1.5e-09  Score=90.55  Aligned_cols=109  Identities=13%  Similarity=0.060  Sum_probs=68.0

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccc
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTIT  136 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  136 (253)
                      ...+.++||+|..+-.   ......+|.++++.+....+.+..+..-   +.     .+.-++|.||.|+.....     
T Consensus       148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k~g---i~-----E~aDIiVVNKaDl~~~~~-----  211 (332)
T PRK09435        148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIKKG---IM-----ELADLIVINKADGDNKTA-----  211 (332)
T ss_pred             CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHHhh---hh-----hhhheEEeehhcccchhH-----
Confidence            3568999999975322   2256789999999775556555554321   11     223489999999862110     


Q ss_pred             ccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH-------HhCCceEEeeccCCCC
Q psy9621         137 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR-------EYGVRFMETSAKANIN  209 (253)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~g  209 (253)
                                           .....                       .+.+....       .+..|++.+||+++.|
T Consensus       212 ---------------------a~~~~-----------------------~el~~~L~l~~~~~~~w~~pVi~vSA~~g~G  247 (332)
T PRK09435        212 ---------------------ARRAA-----------------------AEYRSALRLLRPKDPGWQPPVLTCSALEGEG  247 (332)
T ss_pred             ---------------------HHHHH-----------------------HHHHHHHhcccccccCCCCCEEEEECCCCCC
Confidence                                 00000                       01111111       1335899999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q psy9621         210 IEKAFIELATAIYDKT  225 (253)
Q Consensus       210 i~~l~~~l~~~~~~~~  225 (253)
                      +++|++.|.+......
T Consensus       248 IdeL~~~I~~~~~~l~  263 (332)
T PRK09435        248 IDEIWQAIEDHRAALT  263 (332)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999776433

>KOG3886|consensus

Probab=99.12  E-value=6.9e-11  Score=90.99  Aligned_cols=118  Identities=22%  Similarity=0.331  Sum_probs=80.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc-----cccchhhhcCc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF-----HTITTSYYRGA   82 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~~~~   82 (253)
                      .-||+++|.+|+|||++-..+......- ...++-.+|+....+.+- ++..+.+||++|++.+     .......+++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh-hhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            4589999999999999887666332211 122332335554444444 3566999999999854     22345678999


Q ss_pred             cEEEEEEeCCChhhHHHHH---HHHHHHHHhcccccceeEEeeeecccc
Q psy9621          83 MGIMLVYDITNEKSFDNIL---KWLRNIDEHANEDVEKMILGKTKDTAG  128 (253)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~---~~~~~i~~~~~~~~p~iiv~nK~D~~~  128 (253)
                      +++|.|||++..+--.++.   .-++.+.++. ++..+.+...|.|+..
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~  130 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQ  130 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcc
Confidence            9999999999876444443   3444555554 7788999999999973

>KOG0465|consensus

Probab=99.12  E-value=3.1e-10  Score=98.42  Aligned_cols=218  Identities=16%  Similarity=0.154  Sum_probs=143.0

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCC-----CCCc-----------ccCccceeeEEEEEeeCCeEEEEEEEeCCCc
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDA-----FNTT-----------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ   68 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   68 (253)
                      +-....+|.++-+-.+||||+.++++.-.     +...           .....|++...-.....+++..++++|||||
T Consensus        35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGH  114 (721)
T KOG0465|consen   35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGH  114 (721)
T ss_pred             chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCc
Confidence            44567789999999999999999987411     1110           0011233333333334455788999999999


Q ss_pred             ccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccc-----------
Q psy9621          69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITT-----------  137 (253)
Q Consensus        69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~-----------  137 (253)
                      -.|.--....++-.|+++++++....-.-+....|.+.    ...++|.+.+.||+|.-++.-.+.+..           
T Consensus       115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~----~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~  190 (721)
T KOG0465|consen  115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQM----KRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAV  190 (721)
T ss_pred             eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHH----HhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchhe
Confidence            99999999999999999999998776555555566544    234799999999999988864433332           


Q ss_pred             ----------------------cccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhcc------chhHH
Q psy9621         138 ----------------------SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC------KHRGE  189 (253)
Q Consensus       138 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  189 (253)
                                            .++....+..+..+--..+..+.+.+.++++.++..+.++.+.+...      .+...
T Consensus       191 vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~  270 (721)
T KOG0465|consen  191 VQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLK  270 (721)
T ss_pred             eEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHH
Confidence                                  23334444444444444555555556666666655444443322221      22222


Q ss_pred             HHHHH----hC-CceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         190 AIARE----YG-VRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       190 ~~~~~----~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                      ...++    .. +|++-.||..+.||.-+++.++..+..-.+
T Consensus       271 ~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~E  312 (721)
T KOG0465|consen  271 AAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSE  312 (721)
T ss_pred             HHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhh
Confidence            22222    12 699999999999999999999999876443

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.10  E-value=1.1e-09  Score=91.91  Aligned_cols=112  Identities=11%  Similarity=0.138  Sum_probs=57.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccC--ccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc-----hhh
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFIS--TIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT-----TSY   78 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-----~~~   78 (253)
                      ...++|+|+|.+|+|||||||.|.+-.-. +...+  .+..+......... ....+.+||.||..-.....     ..-
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            45789999999999999999999752211 11111  11112222222222 22359999999964322222     223


Q ss_pred             hcCccEEEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeecc
Q psy9621          79 YRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDT  126 (253)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~  126 (253)
                      +...|.+|++.+-  +  |.... .....+.+   .+.|+++|-+|+|.
T Consensus       112 ~~~yD~fiii~s~--r--f~~ndv~La~~i~~---~gK~fyfVRTKvD~  153 (376)
T PF05049_consen  112 FYRYDFFIIISSE--R--FTENDVQLAKEIQR---MGKKFYFVRTKVDS  153 (376)
T ss_dssp             GGG-SEEEEEESS--S----HHHHHHHHHHHH---TT-EEEEEE--HHH
T ss_pred             ccccCEEEEEeCC--C--CchhhHHHHHHHHH---cCCcEEEEEecccc
Confidence            5678988887552  2  33322 33344444   36899999999996

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.08  E-value=5e-09  Score=88.04  Aligned_cols=83  Identities=16%  Similarity=0.177  Sum_probs=52.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeE---------------EEEEEEeCCCcccc---
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKK---------------IKLQIWDTAGQERF---   71 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~---   71 (253)
                      ++|.++|.||||||||+|++.+........|...++...-.+.+.+..               .++.++|+||...-   
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            799999999999999999999866332211211112221122222211               35899999996431   


Q ss_pred             -cccchh---hhcCccEEEEEEeCC
Q psy9621          72 -HTITTS---YYRGAMGIMLVYDIT   92 (253)
Q Consensus        72 -~~~~~~---~~~~~d~~ilv~d~~   92 (253)
                       ..+...   .++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence             222223   357899999999974

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.07  E-value=4.5e-09  Score=88.47  Aligned_cols=117  Identities=16%  Similarity=0.192  Sum_probs=70.7

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcC----CCCC----------cccCccc---eeeEE-----EEEee---CCeEEEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDD----AFNT----------TFISTIG---IDFKI-----KTVDL---KGKKIKL   60 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~----~~~~----------~~~~~~~---~~~~~-----~~~~~---~~~~~~~   60 (253)
                      .+-.+.|.|+|+.++|||||+++|.+.    ....          -..+.-|   ++-.+     ..+.+   .+-...+
T Consensus        14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V   93 (492)
T TIGR02836        14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV   93 (492)
T ss_pred             hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence            455789999999999999999999876    2220          0111112   11111     11222   2345678


Q ss_pred             EEEeCCCcccc--------cc--c-------------------chhhhc-CccEEEEEE-eCC----ChhhHHHH-HHHH
Q psy9621          61 QIWDTAGQERF--------HT--I-------------------TTSYYR-GAMGIMLVY-DIT----NEKSFDNI-LKWL  104 (253)
Q Consensus        61 ~l~Dt~G~~~~--------~~--~-------------------~~~~~~-~~d~~ilv~-d~~----~~~s~~~~-~~~~  104 (253)
                      .++||+|...-        ..  +                   .+..+. .+++.|+|. |.+    .++.+... .+++
T Consensus        94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i  173 (492)
T TIGR02836        94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI  173 (492)
T ss_pred             EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence            99999985211        11  0                   122344 788888887 653    12333333 3566


Q ss_pred             HHHHHhcccccceeEEeeeec
Q psy9621         105 RNIDEHANEDVEKMILGKTKD  125 (253)
Q Consensus       105 ~~i~~~~~~~~p~iiv~nK~D  125 (253)
                      .++.+   .++|+++++||.|
T Consensus       174 ~eLk~---~~kPfiivlN~~d  191 (492)
T TIGR02836       174 EELKE---LNKPFIILLNSTH  191 (492)
T ss_pred             HHHHh---cCCCEEEEEECcC
Confidence            66554   5799999999999

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0705|consensus

Probab=99.07  E-value=4.6e-10  Score=96.22  Aligned_cols=166  Identities=20%  Similarity=0.355  Sum_probs=122.4

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      .+-+.+|+.++|..++|||+|+++++.+.+.....|. +-.|. ..+.+.+....+.+.|.+|...     ..|...+|+
T Consensus        26 rsipelk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~~k-kE~vv~gqs~lLlirdeg~~~~-----aQft~wvda   98 (749)
T KOG0705|consen   26 RSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGRFK-KEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDA   98 (749)
T ss_pred             cccchhheeeeecccCCceeeeeeeccceeccccCCc-Cccce-eeEEeeccceEeeeecccCCch-----hhhhhhccc
Confidence            3456889999999999999999999998888774443 43444 3444666777788889888432     347789999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +||||.+-+..+|+.+..+...+..+. ...+|.++++++.-....                                  
T Consensus        99 vIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~----------------------------------  144 (749)
T KOG0705|consen   99 VVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAK----------------------------------  144 (749)
T ss_pred             eEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcc----------------------------------
Confidence            999999999999999887777765443 357888888876533210                                  


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHh-CCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                ..+.     +.....++++..+ .+.+|++.+.+|.++...|..+...+.....
T Consensus       145 ----------~~rv-----~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~~~  193 (749)
T KOG0705|consen  145 ----------RPRV-----ITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQLRK  193 (749)
T ss_pred             ----------cccc-----cchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHHHh
Confidence                      1111     4444555555555 4899999999999999999999887766543

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.04  E-value=2.1e-09  Score=81.65  Aligned_cols=63  Identities=17%  Similarity=0.229  Sum_probs=44.9

Q ss_pred             EEEEEeCCCccc----ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeee
Q psy9621          59 KLQIWDTAGQER----FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK  124 (253)
Q Consensus        59 ~~~l~Dt~G~~~----~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~  124 (253)
                      .+.++||||...    ...+...+++.+|++|+|.+.++..+-.....+.+......   ..+++|.||+
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~---~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK---SRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC---SSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC---CeEEEEEcCC
Confidence            478999999743    23556778899999999999998766555555555554433   3388888884

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.03  E-value=3.3e-09  Score=80.18  Aligned_cols=35  Identities=11%  Similarity=0.019  Sum_probs=26.8

Q ss_pred             hHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         187 RGEAIAREYG--VRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       187 ~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                      ...+-+++.+  .+++++|+++|+|++++++++....
T Consensus       164 vm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         164 VMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            3344444443  8999999999999999999987653

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.02  E-value=1.9e-08  Score=82.48  Aligned_cols=117  Identities=20%  Similarity=0.299  Sum_probs=67.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcc----------cCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc--
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTF----------ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT--   75 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--   75 (253)
                      ..++|+|+|.+|+|||||++.|.+.......          .++..+......+.-++..+.+.++||||........  
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4689999999999999999999875543321          1223333333344445677889999999953211100  


Q ss_pred             ------------hhh-------------hcCccEEEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccc
Q psy9621          76 ------------TSY-------------YRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ  129 (253)
Q Consensus        76 ------------~~~-------------~~~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~  129 (253)
                                  ..+             =...|++++.++.+... +..+. .....+.    .-+++|.|+.|.|....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRLS----KRVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHHT----TTSEEEEEESTGGGS-H
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHhc----ccccEEeEEecccccCH
Confidence                        000             12468899999876532 11111 2333332    45788999999998743

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.00  E-value=6.5e-09  Score=86.34  Aligned_cols=110  Identities=14%  Similarity=0.091  Sum_probs=63.8

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccc
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTIT  136 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  136 (253)
                      .+.+.++||+|.....   ......+|.++++.+....   ..+......+     .+.|.++++||+|+.+....    
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~----  190 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNV----  190 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHH----
Confidence            4678999999864222   2356677888877443322   3333333322     35788999999998632100    


Q ss_pred             ccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH---HhCCceEEeeccCCCCHHHH
Q psy9621         137 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR---EYGVRFMETSAKANINIEKA  213 (253)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gi~~l  213 (253)
                                            ......                  .. .....+.+   .+..+++.+||+++.|++++
T Consensus       191 ----------------------~~~~~~------------------~~-~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L  229 (300)
T TIGR00750       191 ----------------------TIARLM------------------LA-LALEEIRRREDGWRPPVLTTSAVEGRGIDEL  229 (300)
T ss_pred             ----------------------HHHHHH------------------HH-HHHhhccccccCCCCCEEEEEccCCCCHHHH
Confidence                                  000000                  00 00011111   12347899999999999999


Q ss_pred             HHHHHHHHH
Q psy9621         214 FIELATAIY  222 (253)
Q Consensus       214 ~~~l~~~~~  222 (253)
                      ++.|.....
T Consensus       230 ~~~i~~~~~  238 (300)
T TIGR00750       230 WDAIEEHKT  238 (300)
T ss_pred             HHHHHHHHH
Confidence            999988754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=1.3e-08  Score=85.67  Aligned_cols=154  Identities=18%  Similarity=0.123  Sum_probs=101.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCC---CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFN---TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      .|...|+-.-|||||+..+.+....   +.-...+.+|.........  +..+.++|.||++++-...-..+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~--d~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLE--DGVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCC--CCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            4778899999999999999875433   2223333334443333333  3478999999999887666667779999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcccccce-eEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHANEDVEK-MILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |++.++.-..+..+. + .+....  +++. +||++|+|.....                                    
T Consensus        80 vV~~deGl~~qtgEh-L-~iLdll--gi~~giivltk~D~~d~~------------------------------------  119 (447)
T COG3276          80 VVAADEGLMAQTGEH-L-LILDLL--GIKNGIIVLTKADRVDEA------------------------------------  119 (447)
T ss_pred             EEeCccCcchhhHHH-H-HHHHhc--CCCceEEEEeccccccHH------------------------------------
Confidence            999965433332221 1 122222  4555 9999999987210                                    


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHH---HhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAR---EYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                                      ...+...++.+   --..++|.+|+++|.||++|.+.|..+..
T Consensus       120 ----------------r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         120 ----------------RIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             ----------------HHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence                            00111111111   12367899999999999999999999885

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.94  E-value=5.3e-09  Score=85.09  Aligned_cols=25  Identities=16%  Similarity=0.149  Sum_probs=22.5

Q ss_pred             CCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         196 GVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       196 ~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                      ..+++.+||++|+|+++++++|...
T Consensus       263 ~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        263 EIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHh
Confidence            3799999999999999999999763

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.93  E-value=1.9e-08  Score=83.25  Aligned_cols=182  Identities=13%  Similarity=0.067  Sum_probs=106.8

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCccc--------------CccceeeEEEEEeeCCe-------------
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFI--------------STIGIDFKIKTVDLKGK-------------   56 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-------------   56 (253)
                      ......+.|.+.|+-+.|||||+-.|..+..+...-              .....+.....+-++++             
T Consensus       112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE  191 (527)
T COG5258         112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE  191 (527)
T ss_pred             cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence            345678999999999999999998887665543200              00011111111111111             


Q ss_pred             --------EEEEEEEeCCCcccccc--cchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecc
Q psy9621          57 --------KIKLQIWDTAGQERFHT--ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT  126 (253)
Q Consensus        57 --------~~~~~l~Dt~G~~~~~~--~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~  126 (253)
                              +.-+.+.||.||+.|-.  ++..+-...|-.++++.+++.-+--.  +...-+.-  .-++|++++.+|+|+
T Consensus       192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t--kEHLgi~~--a~~lPviVvvTK~D~  267 (527)
T COG5258         192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT--KEHLGIAL--AMELPVIVVVTKIDM  267 (527)
T ss_pred             HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh--hHhhhhhh--hhcCCEEEEEEeccc
Confidence                    23478999999999843  44555677899999998887543222  11111111  247999999999999


Q ss_pred             ccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhH--HHHHHHhC---CceEE
Q psy9621         127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG--EAIAREYG---VRFME  201 (253)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~  201 (253)
                      .                          .++.+..+.+-...+.+.....+-..   .+.+..  ...+-+.+   +|+|.
T Consensus       268 ~--------------------------~ddr~~~v~~ei~~~Lk~v~Rip~~v---k~~~d~v~aa~a~k~~~~vvPi~~  318 (527)
T COG5258         268 V--------------------------PDDRFQGVVEEISALLKRVGRIPLIV---KDTDDVVLAAKAMKAGRGVVPIFY  318 (527)
T ss_pred             C--------------------------cHHHHHHHHHHHHHHHHHhcccceee---eccchhHHhhhhhhcCCceEEEEE
Confidence            7                          34445555555554444433222110   111111  12222222   69999


Q ss_pred             eeccCCCCHHHHHHHHH
Q psy9621         202 TSAKANINIEKAFIELA  218 (253)
Q Consensus       202 ~Sa~~~~gi~~l~~~l~  218 (253)
                      +|+.||+|++-|.+.+.
T Consensus       319 tSsVTg~GldlL~e~f~  335 (527)
T COG5258         319 TSSVTGEGLDLLDEFFL  335 (527)
T ss_pred             EecccCccHHHHHHHHH
Confidence            99999999987555443

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.92  E-value=1.2e-08  Score=90.50  Aligned_cols=123  Identities=19%  Similarity=0.223  Sum_probs=74.7

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceee-EEEEEeeCCeEEEEEEEeCCCccccc-------cc--
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDF-KIKTVDLKGKKIKLQIWDTAGQERFH-------TI--   74 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~--   74 (253)
                      +-+..++|+|+|.+|+||||++|.+++...........+.+. ........  ...+.++||||.....       ..  
T Consensus       114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id--G~~L~VIDTPGL~dt~~dq~~neeILk  191 (763)
T TIGR00993       114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEKILS  191 (763)
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC--CceEEEEECCCCCccccchHHHHHHHH
Confidence            345678999999999999999999998764332211111111 11122223  3569999999976431       11  


Q ss_pred             -chhhhc--CccEEEEEEeCCChhhHHHHHHHHHHHHHhccc--ccceeEEeeeeccccc
Q psy9621          75 -TTSYYR--GAMGIMLVYDITNEKSFDNILKWLRNIDEHANE--DVEKMILGKTKDTAGQ  129 (253)
Q Consensus        75 -~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~iiv~nK~D~~~~  129 (253)
                       ...++.  ++|++|+|..++.......-..++..+...++.  -.-.||+.++.|...+
T Consensus       192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence             112333  589999998876443322223455555555432  2467888888888753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG0410|consensus

Probab=98.89  E-value=4.2e-09  Score=85.27  Aligned_cols=157  Identities=15%  Similarity=0.091  Sum_probs=94.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc--cccch------hh
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF--HTITT------SY   78 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~------~~   78 (253)
                      .+-.-|.|+|.+|+|||||+++|......+...-.-..|.+.+...+..+. .+.+.||.|.-.-  ..+..      .-
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLee  254 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLEE  254 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence            344579999999999999999999654433322111123333333344333 4788899996321  11111      12


Q ss_pred             hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccccccee----EEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621          79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKM----ILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN  154 (253)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i----iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (253)
                      ...+|.++-|.|+++|+--+.....+..+.+..=.+.|.+    =|-||+|...                          
T Consensus       255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~--------------------------  308 (410)
T KOG0410|consen  255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE--------------------------  308 (410)
T ss_pred             HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccc--------------------------
Confidence            4679999999999999855544444444444322234433    3456666541                          


Q ss_pred             ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                          .             .--.+.++  .+.+||++|.|++++.+.+-......+
T Consensus       309 --------------------~-------------~~e~E~n~--~v~isaltgdgl~el~~a~~~kv~~~t  344 (410)
T KOG0410|consen  309 --------------------D-------------EVEEEKNL--DVGISALTGDGLEELLKAEETKVASET  344 (410)
T ss_pred             --------------------c-------------cCccccCC--ccccccccCccHHHHHHHHHHHhhhhh
Confidence                                1             10111222  478999999999999998877665543

>KOG0082|consensus

Probab=98.89  E-value=1.3e-08  Score=84.46  Aligned_cols=140  Identities=11%  Similarity=0.147  Sum_probs=84.9

Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhh-------HHHHH---HHHHHHHHhc-ccccceeEEeeee
Q psy9621          56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS-------FDNIL---KWLRNIDEHA-NEDVEKMILGKTK  124 (253)
Q Consensus        56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s-------~~~~~---~~~~~i~~~~-~~~~p~iiv~nK~  124 (253)
                      +...+.++|.+||...+.-|-..+.+++++|||++++..+-       ...+.   ..++.|..+. -.+.++++++||.
T Consensus       193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~  272 (354)
T KOG0082|consen  193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK  272 (354)
T ss_pred             CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence            34679999999998778888889999999999999986432       12222   3444443332 2679999999999


Q ss_pred             ccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchh----hhhhccchhHHHHHHHh--CCc
Q psy9621         125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV----VNSWVCKHRGEAIAREY--GVR  198 (253)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~  198 (253)
                      |+......                                ...+..++++....    -.........+++.+..  .+-
T Consensus       273 DLFeEKi~--------------------------------~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy  320 (354)
T KOG0082|consen  273 DLFEEKIK--------------------------------KVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIY  320 (354)
T ss_pred             HHHHHHhc--------------------------------cCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcce
Confidence            99743221                                01111111111110    00001111112222222  244


Q ss_pred             eEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621         199 FMETSAKANINIEKAFIELATAIYDKTSG  227 (253)
Q Consensus       199 ~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  227 (253)
                      .-.+.|.+-.+|+.+|+.....+......
T Consensus       321 ~h~T~AtDT~nv~~vf~av~d~Ii~~nlk  349 (354)
T KOG0082|consen  321 VHFTCATDTQNVQFVFDAVTDTIIQNNLK  349 (354)
T ss_pred             EEEEeeccHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888889999999999888876543

>KOG0468|consensus

Probab=98.89  E-value=1.3e-08  Score=89.36  Aligned_cols=119  Identities=21%  Similarity=0.240  Sum_probs=84.9

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc---------cc--------CccceeeEEEEEee---CCeEEEEEEEe
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT---------FI--------STIGIDFKIKTVDL---KGKKIKLQIWD   64 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~---------~~--------~~~~~~~~~~~~~~---~~~~~~~~l~D   64 (253)
                      ..+..++|.++|+-+.|||+|+..|....-+..         |.        +..++-..+.++-.   +++.+-++++|
T Consensus       124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD  203 (971)
T KOG0468|consen  124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD  203 (971)
T ss_pred             CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence            345678999999999999999998864322211         11        11122222333322   45667889999


Q ss_pred             CCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        65 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ||||-.|.......++.+|++++++|+...-.+..-+-..+.+    ..+.|+.++.||+|..
T Consensus       204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai----q~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI----QNRLPIVVVINKVDRL  262 (971)
T ss_pred             CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH----hccCcEEEEEehhHHH
Confidence            9999999888889999999999999998776665533333333    3578999999999975

>KOG0467|consensus

Probab=98.86  E-value=9.4e-09  Score=91.41  Aligned_cols=122  Identities=16%  Similarity=0.167  Sum_probs=90.9

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCC--------------CcccCccceeeEEEEEeeCCeEEEEEEEeCC
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFN--------------TTFISTIGIDFKIKTVDLKGKKIKLQIWDTA   66 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   66 (253)
                      |.+++.+...+++++-+-.=|||||...|....-.              .....+-|+++....+.+-.+.+.++++|+|
T Consensus         1 ~~~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidsp   80 (887)
T KOG0467|consen    1 ALQKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSP   80 (887)
T ss_pred             CCCCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCC
Confidence            56788899999999999999999999998642211              1122345777776677766678889999999


Q ss_pred             CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecc
Q psy9621          67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT  126 (253)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~  126 (253)
                      ||-+|....+...+-+|++++++|+...-.-+.    +.-+++.-..+...++|+||+|.
T Consensus        81 ghvdf~sevssas~l~d~alvlvdvvegv~~qt----~~vlrq~~~~~~~~~lvinkidr  136 (887)
T KOG0467|consen   81 GHVDFSSEVSSASRLSDGALVLVDVVEGVCSQT----YAVLRQAWIEGLKPILVINKIDR  136 (887)
T ss_pred             CccchhhhhhhhhhhcCCcEEEEeeccccchhH----HHHHHHHHHccCceEEEEehhhh
Confidence            999999999999999999999999976432222    12222222245677788899994

>KOG1486|consensus

Probab=98.85  E-value=1.3e-07  Score=74.14  Aligned_cols=198  Identities=18%  Similarity=0.224  Sum_probs=110.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEE-----EEeeCCeEEEEEEEeCCCccccccc-------ch
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIK-----TVDLKGKKIKLQIWDTAGQERFHTI-------TT   76 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~   76 (253)
                      .-+|+++|-|.+|||||+..+...+-...     +.+|...     .+.+++  ..+++.|.||..+-...       .-
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA-----~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQvi  134 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAA-----SYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVI  134 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhh-----ceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEE
Confidence            46899999999999999999986433221     1222222     233333  45899999996432211       12


Q ss_pred             hhhcCccEEEEEEeCCChhhHH-HHHHHHHHHHHhcccccceeEEeeee-cccc-----c------cccccccccccccc
Q psy9621          77 SYYRGAMGIMLVYDITNEKSFD-NILKWLRNIDEHANEDVEKMILGKTK-DTAG-----Q------ERFHTITTSYYRGA  143 (253)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~-~~~~~~~~i~~~~~~~~p~iiv~nK~-D~~~-----~------~~~~~~~~~~~~~~  143 (253)
                      ...+-+|.+++|.|++..+.-. .+.+.++.+--...+..|-+-+-.|- ....     +      .....+...|....
T Consensus       135 avArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~N  214 (364)
T KOG1486|consen  135 AVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHN  214 (364)
T ss_pred             EEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeecc
Confidence            3457899999999999876433 33445555432223344444332211 1100     0      01111122244444


Q ss_pred             eeeEEEEeccCccchhhHHH----HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621         144 MGIMLVYDITNEKSFDNILK----WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                      ..++..-|++. +.|-++..    +...+.-+. +.+.     ++.++...+++..+-  +.+|+....|++.+++.|+.
T Consensus       215 aevl~ReD~t~-DdfIDvi~gnr~Y~~ClYvYn-KID~-----vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe  285 (364)
T KOG1486|consen  215 AEVLFREDCTV-DDFIDVIEGNRVYIKCLYVYN-KIDQ-----VSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWE  285 (364)
T ss_pred             ceEEEecCCCh-HHHHHHHhccceEEEEEEEee-ccce-----ecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHH
Confidence            55555555444 33444432    222222221 2222     566677777766653  66788889999999999998


Q ss_pred             HHH
Q psy9621         220 AIY  222 (253)
Q Consensus       220 ~~~  222 (253)
                      .+.
T Consensus       286 ~l~  288 (364)
T KOG1486|consen  286 ELN  288 (364)
T ss_pred             Hhc
Confidence            764

>smart00053 DYNc Dynamin, GTPase

Probab=98.85  E-value=2.6e-08  Score=79.45  Aligned_cols=68  Identities=13%  Similarity=0.188  Sum_probs=43.2

Q ss_pred             EEEEEEeCCCccc-------------ccccchhhhcC-ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeee
Q psy9621          58 IKLQIWDTAGQER-------------FHTITTSYYRG-AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT  123 (253)
Q Consensus        58 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~-~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK  123 (253)
                      ..+.++||||...             ...+...|++. .+++++|+|++..-.-....+..+.+.   ..+.|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence            4688999999742             12344567774 458888988765322222223333332   257899999999


Q ss_pred             ecccc
Q psy9621         124 KDTAG  128 (253)
Q Consensus       124 ~D~~~  128 (253)
                      .|...
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99973

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd01855 YqeH YqeH

Probab=98.84  E-value=1.9e-08  Score=78.05  Aligned_cols=94  Identities=13%  Similarity=0.084  Sum_probs=63.8

Q ss_pred             ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEE
Q psy9621          71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVY  150 (253)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  150 (253)
                      +..++..+++.+|++++|+|++++..     .|...+.... .+.|+++|+||+|+..+                     
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~~~~ilV~NK~Dl~~~---------------------   76 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-GNNPVILVGNKIDLLPK---------------------   76 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-CCCcEEEEEEchhcCCC---------------------
Confidence            46777888999999999999987642     1222222222 46899999999998621                     


Q ss_pred             eccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHH-----HHhCC---ceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         151 DITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIA-----REYGV---RFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                                               .      ........+.     +..+.   +++++||++|.|+++++..|...+.
T Consensus        77 -------------------------~------~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          77 -------------------------D------KNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             -------------------------C------CCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence                                     1      0111111221     22332   6899999999999999999988764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG1143|consensus

Probab=98.78  E-value=1.7e-07  Score=77.54  Aligned_cols=179  Identities=16%  Similarity=0.139  Sum_probs=102.3

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc-----------------------ccCccceeeEEEEEeeCCe------
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT-----------------------FISTIGIDFKIKTVDLKGK------   56 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~------   56 (253)
                      +--.++++|+|-..+|||||+--+..+..+..                       ....+|++..-..+++...      
T Consensus       164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi  243 (591)
T KOG1143|consen  164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI  243 (591)
T ss_pred             cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence            34578999999999999999977654332211                       1123343333333333211      


Q ss_pred             ----EEEEEEEeCCCcccccccchhhhc--CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621          57 ----KIKLQIWDTAGQERFHTITTSYYR--GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE  130 (253)
Q Consensus        57 ----~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  130 (253)
                          ...+.++|.+|+..|....-..+.  .+|.+.+|++++..-.+..- +-+-.+..   -++|++++.+|+|+... 
T Consensus       244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-EHLgl~~A---L~iPfFvlvtK~Dl~~~-  318 (591)
T KOG1143|consen  244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-EHLGLIAA---LNIPFFVLVTKMDLVDR-  318 (591)
T ss_pred             HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-HHHHHHHH---hCCCeEEEEEeeccccc-
Confidence                235789999999998665433332  46778888887765444332 22222222   47999999999999833 


Q ss_pred             ccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhh--ccchhHHHHHHH----hCCceEEeec
Q psy9621         131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW--VCKHRGEAIARE----YGVRFMETSA  204 (253)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~Sa  204 (253)
                                               ...+...+-+..+.+..   ....+..  -..+++-..+++    .-+|+|-+|+
T Consensus       319 -------------------------~~~~~tv~~l~nll~~~---Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSs  370 (591)
T KOG1143|consen  319 -------------------------QGLKKTVKDLSNLLAKA---GCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSS  370 (591)
T ss_pred             -------------------------hhHHHHHHHHHHHHhhc---CccccceEeechHHHHHHHHHhccCCceeEEEEee
Confidence                                     22333333333322221   1111000  123333333333    3379999999


Q ss_pred             cCCCCHHHHHHHH
Q psy9621         205 KANINIEKAFIEL  217 (253)
Q Consensus       205 ~~~~gi~~l~~~l  217 (253)
                      .+|+|++-+...|
T Consensus       371 VsGegl~ll~~fL  383 (591)
T KOG1143|consen  371 VSGEGLRLLRTFL  383 (591)
T ss_pred             cCccchhHHHHHH
Confidence            9999988655443

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.77  E-value=1.9e-08  Score=74.23  Aligned_cols=54  Identities=20%  Similarity=0.276  Sum_probs=39.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ   68 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   68 (253)
                      +++++|.+|+|||||+|++.+...... ....|.+.....+.+..   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            899999999999999999997765432 23334444444454443   4899999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01900 YchF YchF subfamily

Probab=98.76  E-value=3.7e-08  Score=80.17  Aligned_cols=81  Identities=15%  Similarity=0.186  Sum_probs=50.8

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCe---------------EEEEEEEeCCCcccc----c
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK---------------KIKLQIWDTAGQERF----H   72 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~----~   72 (253)
                      |+++|.||||||||+|++.+........|...++...-.+.+.+.               ...+.++|+||...-    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999987653322222212222222333322               125899999996421    2


Q ss_pred             ccchhh---hcCccEEEEEEeCC
Q psy9621          73 TITTSY---YRGAMGIMLVYDIT   92 (253)
Q Consensus        73 ~~~~~~---~~~~d~~ilv~d~~   92 (253)
                      ++...|   ++.+|++++|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            222333   56899999999863

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=3.5e-08  Score=79.03  Aligned_cols=118  Identities=14%  Similarity=0.072  Sum_probs=77.1

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcC---C-------CCCc----ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDD---A-------FNTT----FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF   71 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~---~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   71 (253)
                      .-+.+||..+|+-+=|||||..++...   .       +...    -....|++.....+.+.-.+..+-..|+|||..|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence            446789999999999999999887521   0       1110    0123466666666766666667888999999988


Q ss_pred             cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccccc-ceeEEeeeeccc
Q psy9621          72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDV-EKMILGKTKDTA  127 (253)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~-p~iiv~nK~D~~  127 (253)
                      ....-.-.-+.|++|+|+++++.---+....    ++-...-+. .+++++||+|+.
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEH----iLlarqvGvp~ivvflnK~Dmv  141 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPMPQTREH----ILLARQVGVPYIVVFLNKVDMV  141 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCCCcchhh----hhhhhhcCCcEEEEEEeccccc
Confidence            5433334457899999999987431111111    111111355 567789999997

>PRK12289 GTPase RsgA; Reviewed

Probab=98.76  E-value=5.4e-08  Score=82.07  Aligned_cols=91  Identities=13%  Similarity=0.195  Sum_probs=66.6

Q ss_pred             ccchhhhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEe
Q psy9621          73 TITTSYYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYD  151 (253)
Q Consensus        73 ~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (253)
                      .+.+..+.++|.+++|+|+.++. +...+.+|+..+..   .++|+++|+||+|+.                        
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv------------------------  133 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLV------------------------  133 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcC------------------------
Confidence            34455688999999999998876 45566777766532   579999999999985                        


Q ss_pred             ccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621         152 ITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                                            ...+     .  ....+..+.++++++.+||+++.|+++|++.|..
T Consensus       134 ----------------------~~~~-----~--~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        134 ----------------------SPTE-----Q--QQWQDRLQQWGYQPLFISVETGIGLEALLEQLRN  172 (352)
T ss_pred             ----------------------ChHH-----H--HHHHHHHHhcCCeEEEEEcCCCCCHHHHhhhhcc
Confidence                                  1111     0  1112233466788999999999999999988864

>cd01859 MJ1464 MJ1464

Probab=98.75  E-value=3.8e-08  Score=73.83  Aligned_cols=95  Identities=12%  Similarity=0.099  Sum_probs=64.0

Q ss_pred             ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEE
Q psy9621          71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVY  150 (253)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  150 (253)
                      |..+.+...+++|++|+|+|++++..... ..+...+ .  ..+.|+++++||+|+.                       
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~-~--~~~~p~iiv~NK~Dl~-----------------------   54 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYV-L--ELGKKLLIVLNKADLV-----------------------   54 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHH-H--hCCCcEEEEEEhHHhC-----------------------
Confidence            34566778889999999999987643222 1222222 1  2468999999999985                       


Q ss_pred             eccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         151 DITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                                             ....     .  .....+.+..+.+++.+||+++.|++++++.+...+.
T Consensus        55 -----------------------~~~~-----~--~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          55 -----------------------PKEV-----L--EKWKSIKESEGIPVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             -----------------------CHHH-----H--HHHHHHHHhCCCcEEEEEccccccHHHHHHHHHHHHh
Confidence                                   1110     0  0111233345678999999999999999999988765

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.73  E-value=4.9e-08  Score=80.56  Aligned_cols=88  Identities=14%  Similarity=0.123  Sum_probs=67.1

Q ss_pred             hhhhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621          76 TSYYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN  154 (253)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (253)
                      ...+.++|.+++|+|++++. ++..+.+|+..+..   .++|+++|+||+|+.                           
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~---------------------------  122 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLL---------------------------  122 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCC---------------------------
Confidence            34578999999999999998 88888888877654   479999999999986                           


Q ss_pred             ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621         155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                                         ....       ...........+.+++.+||+++.|+++|+..|..
T Consensus       123 -------------------~~~~-------~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         123 -------------------DDEE-------EELELVEALALGYPVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             -------------------ChHH-------HHHHHHHHHhCCCeEEEEECCCCccHHHHHhhhcc
Confidence                               1110       01123334456789999999999999999887763

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.73  E-value=2.3e-08  Score=79.31  Aligned_cols=105  Identities=13%  Similarity=0.131  Sum_probs=62.3

Q ss_pred             EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccc
Q psy9621          58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITT  137 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  137 (253)
                      +.+.+++|.|--+-+   .....-+|.+++|......+..+.+..-+.+        ++-++|.||.|..+++..     
T Consensus       122 ~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE--------iaDi~vVNKaD~~gA~~~-----  185 (266)
T PF03308_consen  122 FDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIME--------IADIFVVNKADRPGADRT-----  185 (266)
T ss_dssp             -SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHH--------H-SEEEEE--SHHHHHHH-----
T ss_pred             CCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhh--------hccEEEEeCCChHHHHHH-----
Confidence            457788888743211   1245678999999987777666665554444        466789999997643221     


Q ss_pred             cccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHH----HHhCCceEEeeccCCCCHHHH
Q psy9621         138 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIA----REYGVRFMETSAKANINIEKA  213 (253)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l  213 (253)
                                          ..++                        .....+.    ..+.-|++.|||.++.|+++|
T Consensus       186 --------------------~~~l------------------------~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL  221 (266)
T PF03308_consen  186 --------------------VRDL------------------------RSMLHLLREREDGWRPPVLKTSALEGEGIDEL  221 (266)
T ss_dssp             --------------------HHHH------------------------HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHH
T ss_pred             --------------------HHHH------------------------HHHHhhccccccCCCCCEEEEEeCCCCCHHHH
Confidence                                0000                        0000111    112358999999999999999


Q ss_pred             HHHHHHHHH
Q psy9621         214 FIELATAIY  222 (253)
Q Consensus       214 ~~~l~~~~~  222 (253)
                      ++.|.+.-.
T Consensus       222 ~~~i~~~~~  230 (266)
T PF03308_consen  222 WEAIDEHRD  230 (266)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887543

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.71  E-value=6.3e-08  Score=80.35  Aligned_cols=86  Identities=17%  Similarity=0.165  Sum_probs=63.5

Q ss_pred             hhcCccEEEEEEeCCChhhHHH-HHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCcc
Q psy9621          78 YYRGAMGIMLVYDITNEKSFDN-ILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEK  156 (253)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (253)
                      ...++|.+++|+|++++..... +.+|+..+..   .++|+++|+||+|+.                             
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~-----------------------------  124 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLL-----------------------------  124 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcC-----------------------------
Confidence            4589999999999988865444 4677766543   579999999999985                             


Q ss_pred             chhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHH
Q psy9621         157 SFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA  218 (253)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  218 (253)
                                       ....      ......+..+..+++++++||+++.|++++++.+.
T Consensus       125 -----------------~~~~------~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~l~  163 (298)
T PRK00098        125 -----------------DDLE------EARELLALYRAIGYDVLELSAKEGEGLDELKPLLA  163 (298)
T ss_pred             -----------------CCHH------HHHHHHHHHHHCCCeEEEEeCCCCccHHHHHhhcc
Confidence                             1111      11123344556678999999999999999998764

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.69  E-value=5.2e-08  Score=74.14  Aligned_cols=56  Identities=20%  Similarity=0.305  Sum_probs=40.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCC
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG   67 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   67 (253)
                      ..++++|+|.||+|||||+|++.+...... .+..|++.....+.+.   ..+.++||||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~---~~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLD---KKVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeC---CCEEEEECcC
Confidence            358999999999999999999998655333 3334555554444443   2588999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=98.68  E-value=7.4e-08  Score=72.35  Aligned_cols=56  Identities=16%  Similarity=0.210  Sum_probs=37.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCC
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG   67 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   67 (253)
                      ..++|+++|.+|||||||+|++.+...... .+..|.+.....+...   -.+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV-APIPGETKVWQYITLM---KRIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceee-CCCCCeeEeEEEEEcC---CCEEEEECcC
Confidence            467899999999999999999987554332 2233434333333322   2378999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG2486|consensus

Probab=98.68  E-value=4.7e-08  Score=77.72  Aligned_cols=115  Identities=19%  Similarity=0.161  Sum_probs=71.3

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccC-ccceeeEEEEEeeCCeEEEEEEEeCCCc----------cccc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFIS-TIGIDFKIKTVDLKGKKIKLQIWDTAGQ----------ERFH   72 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~   72 (253)
                      .|++....++++|-+|+|||+|++.+...+....... ..|-+   +.++...-...+.+.|.||-          .++.
T Consensus       131 ~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T---q~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~  207 (320)
T KOG2486|consen  131 CPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT---QAINHFHVGKSWYEVDLPGYGRAGYGFELPADWD  207 (320)
T ss_pred             CCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc---eeeeeeeccceEEEEecCCcccccCCccCcchHh
Confidence            4567789999999999999999999986554433222 33422   23333333456899999992          2344


Q ss_pred             ccchhhhcCcc---EEEEEEeCCChhh-HHH-HHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          73 TITTSYYRGAM---GIMLVYDITNEKS-FDN-ILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        73 ~~~~~~~~~~d---~~ilv~d~~~~~s-~~~-~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .....|+.+-+   -+++++|++.+-. -+. ...|+.+      .++|..+|.||+|..
T Consensus       208 ~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~  261 (320)
T KOG2486|consen  208 KFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQ  261 (320)
T ss_pred             HhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhh
Confidence            44455554332   3455556654321 111 1134333      589999999999975

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=7.9e-07  Score=74.05  Aligned_cols=84  Identities=17%  Similarity=0.242  Sum_probs=54.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCC-c-----ccCccceeeEEEE--------Ee--eCCeEEEEEEEeCCCc----
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNT-T-----FISTIGIDFKIKT--------VD--LKGKKIKLQIWDTAGQ----   68 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~-~-----~~~~~~~~~~~~~--------~~--~~~~~~~~~l~Dt~G~----   68 (253)
                      -+++.++|.||||||||.|++....... +     ..|.+|+.+-+-.        ..  .......+.++|.+|.    
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            3789999999999999999999765431 1     1233333222110        00  0112356889998874    


Q ss_pred             ccccccchhh---hcCccEEEEEEeCC
Q psy9621          69 ERFHTITTSY---YRGAMGIMLVYDIT   92 (253)
Q Consensus        69 ~~~~~~~~~~---~~~~d~~ilv~d~~   92 (253)
                      ++-+++-..|   +|.+|+++-|++..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence            4556666666   47899999999966

>KOG3887|consensus

Probab=98.67  E-value=1.8e-07  Score=72.91  Aligned_cols=115  Identities=17%  Similarity=0.276  Sum_probs=73.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEE--EeeCCeEEEEEEEeCCCccccccc---chhhhcCcc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKT--VDLKGKKIKLQIWDTAGQERFHTI---TTSYYRGAM   83 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~Dt~G~~~~~~~---~~~~~~~~d   83 (253)
                      ..+|+++|...+||||+..-......+..   |...+.+.+.  -.+...-+.+.+||.||+-.+..-   ....++++.
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPne---TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g  103 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNE---TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG  103 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCc---eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence            35799999999999999876665443322   2221111110  011223467999999999655332   356789999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhc--ccccceeEEeeeeccc
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHA--NEDVEKMILGKTKDTA  127 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~  127 (253)
                      ++|+|+|+.+. -++.+.++...+.+..  .+++.+=++..|.|..
T Consensus       104 ALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGL  148 (347)
T KOG3887|consen  104 ALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGL  148 (347)
T ss_pred             eEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence            99999998643 1333333333333322  3789999999999986

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.64  E-value=5.9e-07  Score=74.39  Aligned_cols=117  Identities=17%  Similarity=0.279  Sum_probs=74.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCc----------ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc---cc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT----------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF---HT   73 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~   73 (253)
                      ...++|+++|+.|.|||||+|.|++......          ..+++.+......+.-++-...+.++||||..++   ..
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            5678999999999999999999987533222          3455555666566666677789999999996432   11


Q ss_pred             cc-----------hhhh--------------cCccEEEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccc
Q psy9621          74 IT-----------TSYY--------------RGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        74 ~~-----------~~~~--------------~~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .|           ..|+              ..++++++.+..+.. ++..+. +....+.    ..+-+|-|.-|+|..
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~l  175 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS----KRVNLIPVIAKADTL  175 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh----cccCeeeeeeccccC
Confidence            11           1111              236778887775532 233332 2333333    345677777899987


Q ss_pred             c
Q psy9621         128 G  128 (253)
Q Consensus       128 ~  128 (253)
                      .
T Consensus       176 T  176 (373)
T COG5019         176 T  176 (373)
T ss_pred             C
Confidence            3

>cd01856 YlqF YlqF

Probab=98.63  E-value=1.1e-07  Score=72.43  Aligned_cols=58  Identities=17%  Similarity=0.273  Sum_probs=41.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ   68 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   68 (253)
                      ...++++++|.+|+|||||++++....+... .+..+.+.....+.+.   ..+.+|||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            3457999999999999999999998766422 3333445554444443   35889999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.62  E-value=2.3e-07  Score=78.28  Aligned_cols=88  Identities=19%  Similarity=0.197  Sum_probs=65.6

Q ss_pred             hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      ..++|.+++|++++...++..+.+|+..+..   .++|.+||+||+|+.                               
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~-------------------------------  163 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLL-------------------------------  163 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCC-------------------------------
Confidence            3568999999999888889999999876542   579999999999996                               


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                                     .....    ..........+..+++++++||+++.|+++|++.|..
T Consensus       164 ---------------~~~~~----~~~~~~~~~y~~~g~~v~~vSA~tg~GideL~~~L~~  205 (347)
T PRK12288        164 ---------------DDEGR----AFVNEQLDIYRNIGYRVLMVSSHTGEGLEELEAALTG  205 (347)
T ss_pred             ---------------CcHHH----HHHHHHHHHHHhCCCeEEEEeCCCCcCHHHHHHHHhh
Confidence                           11100    0011122233456789999999999999999998865

>cd01859 MJ1464 MJ1464

Probab=98.61  E-value=1.4e-07  Score=70.66  Aligned_cols=56  Identities=20%  Similarity=0.211  Sum_probs=40.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCC
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG   67 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   67 (253)
                      ...+++++|.+|+|||||++++.+.... ...++.|.+.....+...   ..+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~---~~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKIT---SKIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcC---CCEEEEECcC
Confidence            4578999999999999999999965432 334555655443333332   2589999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.60  E-value=5.6e-07  Score=72.63  Aligned_cols=114  Identities=18%  Similarity=0.107  Sum_probs=68.9

Q ss_pred             EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccc
Q psy9621          58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITT  137 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  137 (253)
                      +.+.|++|.|-.+-.   -....-+|.+++|.=..-.+..+.+..-+.++        --++|.||.|..+++..     
T Consensus       144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~vINKaD~~~A~~a-----  207 (323)
T COG1703         144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIVINKADRKGAEKA-----  207 (323)
T ss_pred             CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheeeEeccChhhHHHH-----
Confidence            457788888753322   12345688888887666666666666555443        55789999997643211     


Q ss_pred             cccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh--CCceEEeeccCCCCHHHHHH
Q psy9621         138 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY--GVRFMETSAKANINIEKAFI  215 (253)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~  215 (253)
                                              ..++..-                .....+.....  .-|++.+||.+|+|+++|++
T Consensus       208 ------------------------~r~l~~a----------------l~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~  247 (323)
T COG1703         208 ------------------------ARELRSA----------------LDLLREVWRENGWRPPVVTTSALEGEGIDELWD  247 (323)
T ss_pred             ------------------------HHHHHHH----------------HHhhcccccccCCCCceeEeeeccCCCHHHHHH
Confidence                                    0000000                00011112222  35899999999999999999


Q ss_pred             HHHHHHHhccCC
Q psy9621         216 ELATAIYDKTSG  227 (253)
Q Consensus       216 ~l~~~~~~~~~~  227 (253)
                      .+..........
T Consensus       248 ai~~h~~~~~~s  259 (323)
T COG1703         248 AIEDHRKFLTES  259 (323)
T ss_pred             HHHHHHHHHHhc
Confidence            998866554443

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.58  E-value=1.3e-07  Score=80.55  Aligned_cols=99  Identities=17%  Similarity=0.161  Sum_probs=69.5

Q ss_pred             cccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeE
Q psy9621          68 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIM  147 (253)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (253)
                      .+.|..+...+.+.++++++|+|+.+..     ..|..++.+.. .+.|+++|+||+|+..                   
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~-------------------  104 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLP-------------------  104 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCC-------------------
Confidence            4577888888889999999999997654     23555555554 4689999999999861                   


Q ss_pred             EEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHHH
Q psy9621         148 LVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                                 ....  .....+...++++.+++   .++++||++|.|+++++..|.+.
T Consensus       105 ---------------------------k~~~--~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       105 ---------------------------KSVN--LSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             ---------------------------CCCC--HHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence                                       1100  00111223344566675   48999999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.55  E-value=3e-07  Score=75.98  Aligned_cols=59  Identities=22%  Similarity=0.306  Sum_probs=42.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE   69 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   69 (253)
                      ...++++|+|.||||||||+|++.+...... .+..|.+.....+.+.   ..+.++||||--
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLG---KGLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeC---CcEEEEECCCcC
Confidence            4568999999999999999999998665333 3344555555545443   248899999973

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.53  E-value=2.7e-07  Score=75.78  Aligned_cols=58  Identities=19%  Similarity=0.328  Sum_probs=41.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ   68 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   68 (253)
                      ...++++|+|.||||||||+|++.+...... ....|.+.....+.+..   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            3468999999999999999999997654333 22334455444454432   4789999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.52  E-value=7.3e-07  Score=74.40  Aligned_cols=145  Identities=22%  Similarity=0.215  Sum_probs=82.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCC----------ccc-----------CccceeeEEEEEee-------------C
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNT----------TFI-----------STIGIDFKIKTVDL-------------K   54 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~----------~~~-----------~~~~~~~~~~~~~~-------------~   54 (253)
                      .--++|+|++|+||||++..+.......          .++           ...++.+.......             .
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~  193 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK  193 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999998875311000          000           01122222110000             1


Q ss_pred             CeEEEEEEEeCCCccccccc----chhh--------hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEee
Q psy9621          55 GKKIKLQIWDTAGQERFHTI----TTSY--------YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGK  122 (253)
Q Consensus        55 ~~~~~~~l~Dt~G~~~~~~~----~~~~--------~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~n  122 (253)
                      ...+.+.++||||.......    ...+        -..++..++|+|++...  ..+.+ ...+.+.   --+.-+|.|
T Consensus       194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~---~~~~giIlT  267 (318)
T PRK10416        194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA---VGLTGIILT  267 (318)
T ss_pred             hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh---CCCCEEEEE
Confidence            23457999999998543221    1111        12567889999998542  33322 1222221   135568889


Q ss_pred             eeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEe
Q psy9621         123 TKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMET  202 (253)
Q Consensus       123 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (253)
                      |.|..                                                       ...-....++...++|+.++
T Consensus       268 KlD~t-------------------------------------------------------~~~G~~l~~~~~~~~Pi~~v  292 (318)
T PRK10416        268 KLDGT-------------------------------------------------------AKGGVVFAIADELGIPIKFI  292 (318)
T ss_pred             CCCCC-------------------------------------------------------CCccHHHHHHHHHCCCEEEE
Confidence            99965                                                       22234456667779999999


Q ss_pred             eccCCCCHHHHHHH
Q psy9621         203 SAKANINIEKAFIE  216 (253)
Q Consensus       203 Sa~~~~gi~~l~~~  216 (253)
                      +  +|++++++-..
T Consensus       293 ~--~Gq~~~Dl~~~  304 (318)
T PRK10416        293 G--VGEGIDDLQPF  304 (318)
T ss_pred             e--CCCChhhCccC
Confidence            9  88888876543

>KOG0464|consensus

Probab=98.52  E-value=4.9e-08  Score=81.62  Aligned_cols=119  Identities=16%  Similarity=0.186  Sum_probs=94.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcC--------CCCCc--------ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDD--------AFNTT--------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF   71 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   71 (253)
                      ...+|.++.+-.+||||...|+++-        ..+..        ....-|++.....++++++..++.++||||+-.|
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence            4568999999999999999998741        11111        1122366777677888888899999999999999


Q ss_pred             cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621          72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE  130 (253)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  130 (253)
                      +-.....++-.|+++.|||.+....-+.+..|.+.    .+.++|...++||+|..++.
T Consensus       116 ~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~an  170 (753)
T KOG0464|consen  116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLAAN  170 (753)
T ss_pred             EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhhhh
Confidence            99899999999999999999887666667778544    34579999999999988764

>KOG4273|consensus

Probab=98.51  E-value=2.5e-06  Score=67.02  Aligned_cols=185  Identities=18%  Similarity=0.248  Sum_probs=106.1

Q ss_pred             eeEEEEEcCCCC--cHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           9 LFKLLLIGDSGV--GKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         9 ~~ki~vvG~~~~--GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ..-++|+|-.|+  ||-+|++++....|.....+.-...++.-+++-......+.+.-.+--+++.-..-......-+++
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v   83 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV   83 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence            346789999999  999999999988887665554444555444433322222222222211121111111223456789


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      ++||++...++..+..|+.--.-.. .+ -.+.+|||.|.....-+                            +.+++.
T Consensus        84 mvfdlse~s~l~alqdwl~htdins-fd-illcignkvdrvphhla----------------------------hdeyrr  133 (418)
T KOG4273|consen   84 MVFDLSEKSGLDALQDWLPHTDINS-FD-ILLCIGNKVDRVPHHLA----------------------------HDEYRR  133 (418)
T ss_pred             EEEeccchhhhHHHHhhcccccccc-ch-hheecccccccccchhh----------------------------hhHHHH
Confidence            9999999999999999976422111 12 24567999998633211                            011111


Q ss_pred             hhhhhcCCCchhh---------------------hhhccchhHHHHHHHhCCceEEeeccC------------CCCHHHH
Q psy9621         167 NIDEHANEDPQVV---------------------NSWVCKHRGEAIAREYGVRFMETSAKA------------NINIEKA  213 (253)
Q Consensus       167 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~gi~~l  213 (253)
                      .+.+..++.+..+                     ..........+||.++|+.+++.++..            ..||+.+
T Consensus       134 rl~kasdpsrdl~~di~dfgisetegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgveri  213 (418)
T KOG4273|consen  134 RLAKASDPSRDLMIDICDFGISETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERI  213 (418)
T ss_pred             HHHhhcCcchhHhhhhhhccccccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHH
Confidence            1111111111100                     111234456789999999999999832            3478888


Q ss_pred             HHHHHHHHHh
Q psy9621         214 FIELATAIYD  223 (253)
Q Consensus       214 ~~~l~~~~~~  223 (253)
                      |..|-..+-.
T Consensus       214 fgal~ahmwp  223 (418)
T KOG4273|consen  214 FGALNAHMWP  223 (418)
T ss_pred             HHHhhhccCc
Confidence            8888765543

>cd01855 YqeH YqeH

Probab=98.49  E-value=2.4e-07  Score=71.81  Aligned_cols=56  Identities=18%  Similarity=0.284  Sum_probs=38.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCC-------CcccCccceeeEEEEEeeCCeEEEEEEEeCCC
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFN-------TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG   67 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   67 (253)
                      ..+++++|.+|+|||||+|++......       ....+..|.+.....+.+..   .+.+|||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            358999999999999999999874321       11122224455544444432   479999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG2655|consensus

Probab=98.48  E-value=3.8e-06  Score=70.13  Aligned_cols=117  Identities=18%  Similarity=0.274  Sum_probs=73.0

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc---------ccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc---c
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT---------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH---T   73 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~   73 (253)
                      ....++++++|+.|.|||||+|.|+...+...         ...++.+......+.-++-...+.++||||..+..   .
T Consensus        18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~   97 (366)
T KOG2655|consen   18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN   97 (366)
T ss_pred             cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence            34568999999999999999999886543321         22345555555555556777889999999963220   0


Q ss_pred             cc----------------------hhhhc--CccEEEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccc
Q psy9621          74 IT----------------------TSYYR--GAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        74 ~~----------------------~~~~~--~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .|                      +..+.  ..+++++.+..+.. ++..+. .....+.    ..+.+|-|.-|.|..
T Consensus        98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~l  171 (366)
T KOG2655|consen   98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTL  171 (366)
T ss_pred             cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccC
Confidence            11                      11122  46778887775543 222222 2222222    456778888899986

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.45  E-value=4e-07  Score=76.24  Aligned_cols=56  Identities=21%  Similarity=0.322  Sum_probs=44.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ   68 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   68 (253)
                      .+++.|+|-||||||||||+|.+...... .+..|.+...+.+.+...   +.++||||-
T Consensus       132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         132 KIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             ceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCCC---eEEecCCCc
Confidence            47899999999999999999998766333 334477777777766543   899999995

>PRK14974 cell division protein FtsY; Provisional

Probab=98.41  E-value=1.6e-06  Score=72.71  Aligned_cols=96  Identities=14%  Similarity=0.055  Sum_probs=58.2

Q ss_pred             EEEEEEeCCCcccccc-cc---hhh--hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc
Q psy9621          58 IKLQIWDTAGQERFHT-IT---TSY--YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER  131 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~-~~---~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~  131 (253)
                      ..+.++||+|...... +.   ..+  ...+|..++|.|++.......   ....+....   -+--++.||.|..    
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~---~a~~f~~~~---~~~giIlTKlD~~----  292 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE---QAREFNEAV---GIDGVILTKVDAD----  292 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH---HHHHHHhcC---CCCEEEEeeecCC----
Confidence            4689999999864321 11   111  235788899999876532221   112222211   2456778999986    


Q ss_pred             cccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHH
Q psy9621         132 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIE  211 (253)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  211 (253)
                                                                         ...-....++...+.|+.+++  +|++++
T Consensus       293 ---------------------------------------------------~~~G~~ls~~~~~~~Pi~~i~--~Gq~v~  319 (336)
T PRK14974        293 ---------------------------------------------------AKGGAALSIAYVIGKPILFLG--VGQGYD  319 (336)
T ss_pred             ---------------------------------------------------CCccHHHHHHHHHCcCEEEEe--CCCChh
Confidence                                                               122234455566789999988  799998


Q ss_pred             HHHHH
Q psy9621         212 KAFIE  216 (253)
Q Consensus       212 ~l~~~  216 (253)
                      ++...
T Consensus       320 Dl~~~  324 (336)
T PRK14974        320 DLIPF  324 (336)
T ss_pred             hcccC
Confidence            87544

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.40  E-value=9.2e-07  Score=72.30  Aligned_cols=65  Identities=18%  Similarity=0.134  Sum_probs=38.9

Q ss_pred             EEEEEEEeCCCcccccccch-------hh-----hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeee
Q psy9621          57 KIKLQIWDTAGQERFHTITT-------SY-----YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK  124 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~-------~~-----~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~  124 (253)
                      .+.+.++||+|........-       ..     -..+|..++|+|++..  .+.+. ....+.+..   -+.-+|.||.
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~---~~~g~IlTKl  227 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV---GLTGIILTKL  227 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC---CCCEEEEEcc
Confidence            46789999999865322210       11     1248899999999753  22322 223333222   2567888999


Q ss_pred             ccc
Q psy9621         125 DTA  127 (253)
Q Consensus       125 D~~  127 (253)
                      |..
T Consensus       228 De~  230 (272)
T TIGR00064       228 DGT  230 (272)
T ss_pred             CCC
Confidence            976

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd01858 NGP_1 NGP-1

Probab=98.39  E-value=2e-06  Score=64.49  Aligned_cols=46  Identities=9%  Similarity=0.140  Sum_probs=32.4

Q ss_pred             hhcCccEEEEEEeCCChhh--HHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          78 YYRGAMGIMLVYDITNEKS--FDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .+..+|++++|+|+.++..  ...+.+++.   . ...+.|+++|+||+|+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~-~~~~~p~ilVlNKiDl~   52 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---K-EKPHKHLIFVLNKCDLV   52 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHH---h-ccCCCCEEEEEEchhcC
Confidence            4678999999999988742  222223322   2 23468999999999986

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG1547|consensus

Probab=98.38  E-value=1.8e-06  Score=67.49  Aligned_cols=66  Identities=26%  Similarity=0.426  Sum_probs=46.2

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc---------ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT---------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF   71 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   71 (253)
                      ....+||.|+|.+|.|||||+|.++..+....         +..|..+-...+++.-++-..++.++||||...+
T Consensus        43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDq  117 (336)
T KOG1547|consen   43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQ  117 (336)
T ss_pred             ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccc
Confidence            45678999999999999999999975443321         2234444444444544555678899999997654

>KOG1954|consensus

Probab=98.36  E-value=2.4e-06  Score=70.77  Aligned_cols=120  Identities=18%  Similarity=0.204  Sum_probs=78.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCc---ccCccceeeEEEEEee------CCe---------------------
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT---FISTIGIDFKIKTVDL------KGK---------------------   56 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~---~~~~~~~~~~~~~~~~------~~~---------------------   56 (253)
                      +...=|+++|.=.+||||+++.|+...++..   ..||.  ++....+.-      .+.                     
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl  133 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL  133 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence            3445699999999999999999998777632   22222  222222211      111                     


Q ss_pred             ------------EEEEEEEeCCCcc-----------cccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccc
Q psy9621          57 ------------KIKLQIWDTAGQE-----------RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE  113 (253)
Q Consensus        57 ------------~~~~~l~Dt~G~~-----------~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~  113 (253)
                                  --.+.++||||.-           .|....++|...+|.+|++||....+--....+.+..+   .+.
T Consensus       134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL---kG~  210 (532)
T KOG1954|consen  134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL---KGH  210 (532)
T ss_pred             HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh---hCC
Confidence                        1158899999942           34555678899999999999976554333333444444   335


Q ss_pred             ccceeEEeeeeccccccc
Q psy9621         114 DVEKMILGKTKDTAGQER  131 (253)
Q Consensus       114 ~~p~iiv~nK~D~~~~~~  131 (253)
                      .-.+-||+||.|....+.
T Consensus       211 EdkiRVVLNKADqVdtqq  228 (532)
T KOG1954|consen  211 EDKIRVVLNKADQVDTQQ  228 (532)
T ss_pred             cceeEEEeccccccCHHH
Confidence            567889999999986654

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.35  E-value=3.5e-06  Score=63.09  Aligned_cols=84  Identities=12%  Similarity=0.033  Sum_probs=54.3

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          83 MGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      |++++|+|+.++.+...  .++.. ......+.|+++|+||+|+..                                  
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~----------------------------------   43 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVP----------------------------------   43 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCC----------------------------------
Confidence            68899999988765442  23321 111225799999999999851                                  


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                                  ...     + ......+.+..+..++.+||+++.|++++.+.+....
T Consensus        44 ------------~~~-----~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~~   84 (155)
T cd01849          44 ------------KEV-----L-RKWLAYLRHSYPTIPFKISATNGQGIEKKESAFTKQT   84 (155)
T ss_pred             ------------HHH-----H-HHHHHHHHhhCCceEEEEeccCCcChhhHHHHHHHHh
Confidence                        110     0 0111222223356789999999999999999987654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01856 YlqF YlqF

Probab=98.32  E-value=2.6e-06  Score=64.87  Aligned_cols=91  Identities=12%  Similarity=0.016  Sum_probs=59.5

Q ss_pred             ccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621          73 TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI  152 (253)
Q Consensus        73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (253)
                      ......+.++|.+++|+|++.+..-.. ..+...    . .+.|+++++||+|+..                        
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~----~-~~k~~ilVlNK~Dl~~------------------------   60 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKI----L-GNKPRIIVLNKADLAD------------------------   60 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhH----h-cCCCEEEEEehhhcCC------------------------
Confidence            334567889999999999987653221 112221    1 3579999999999851                        


Q ss_pred             cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                                            ...     .  ....++.+..+..++.+||+++.|++++...+...+.
T Consensus        61 ----------------------~~~-----~--~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          61 ----------------------PKK-----T--KKWLKYFESKGEKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             ----------------------hHH-----H--HHHHHHHHhcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence                                  110     0  0011122223456899999999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.31  E-value=1.7e-06  Score=64.82  Aligned_cols=56  Identities=23%  Similarity=0.290  Sum_probs=36.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCC
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAG   67 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   67 (253)
                      ....+++++|.+|+|||||+|.+.+..... ...+  +.+.....+...   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~--~~t~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVP--GTTTSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCC--CcccceEEEEec---CCEEEEECCC
Confidence            356789999999999999999999765322 1111  222222223222   3589999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.30  E-value=4e-05  Score=56.52  Aligned_cols=56  Identities=29%  Similarity=0.558  Sum_probs=39.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCC
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA   66 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   66 (253)
                      ..+||.+-|+||||||||+.++.+.--...+  .++ -+.+..+.-.++.+-|.+.|+.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~--kvg-Gf~t~EVR~gGkR~GF~Ivdl~   59 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY--KVG-GFITPEVREGGKRIGFKIVDLA   59 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCc--eee-eEEeeeeecCCeEeeeEEEEcc
Confidence            4689999999999999999998742222111  122 3445556667788888999987

>KOG0463|consensus

Probab=98.27  E-value=4.4e-06  Score=69.37  Aligned_cols=177  Identities=15%  Similarity=0.130  Sum_probs=95.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCC------------------CcccCcccee-----eEEEEEeeC----------
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFN------------------TTFISTIGID-----FKIKTVDLK----------   54 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~------------------~~~~~~~~~~-----~~~~~~~~~----------   54 (253)
                      .+++|+|+|...+|||||+--|..+..+                  ....+.+|.+     ..-..++-.          
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            3689999999999999999665432221                  1122222222     221112111          


Q ss_pred             ----CeEEEEEEEeCCCcccccccchhhh--cCccEEEEEEeCCChhhHHHHHH-HHHHHHHhcccccceeEEeeeeccc
Q psy9621          55 ----GKKIKLQIWDTAGQERFHTITTSYY--RGAMGIMLVYDITNEKSFDNILK-WLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        55 ----~~~~~~~l~Dt~G~~~~~~~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                          +...-+.++|.+|++.|-...-.-+  .-.|...+++-++..  ...+.+ -+-.-+   .-.+|+++|.+|+|++
T Consensus       212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLAL---aL~VPVfvVVTKIDMC  286 (641)
T KOG0463|consen  212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLAL---ALHVPVFVVVTKIDMC  286 (641)
T ss_pred             eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhh---hhcCcEEEEEEeeccC
Confidence                1112478999999999865443322  346667777665432  122111 111111   2469999999999999


Q ss_pred             cccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhc-cch----hHHHHHHHhCCceEEe
Q psy9621         128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV-CKH----RGEAIAREYGVRFMET  202 (253)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~  202 (253)
                      .+.                          .+.+..+++..+.+.-. .+. .+..+ +.+    .+..|..+.-+|+|.+
T Consensus       287 PAN--------------------------iLqEtmKll~rllkS~g-crK-~PvlVrs~DDVv~~A~NF~Ser~CPIFQv  338 (641)
T KOG0463|consen  287 PAN--------------------------ILQETMKLLTRLLKSPG-CRK-LPVLVRSMDDVVHAAVNFPSERVCPIFQV  338 (641)
T ss_pred             cHH--------------------------HHHHHHHHHHHHhcCCC-ccc-CcEEEecccceEEeeccCccccccceEEe
Confidence            443                          23333334443333210 000 00000 111    1234555566899999


Q ss_pred             eccCCCCHHHHHHHH
Q psy9621         203 SAKANINIEKAFIEL  217 (253)
Q Consensus       203 Sa~~~~gi~~l~~~l  217 (253)
                      |-.+|.|++-|...|
T Consensus       339 SNVtG~NL~LLkmFL  353 (641)
T KOG0463|consen  339 SNVTGTNLPLLKMFL  353 (641)
T ss_pred             ccccCCChHHHHHHH
Confidence            999999998655443

>TIGR00092 GTP-binding protein YchF

Probab=98.26  E-value=4e-06  Score=70.75  Aligned_cols=83  Identities=14%  Similarity=0.013  Sum_probs=53.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCC-CCcccCccceeeEEEEEeeCCe---------------EEEEEEEeCCCccc---
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAF-NTTFISTIGIDFKIKTVDLKGK---------------KIKLQIWDTAGQER---   70 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~---   70 (253)
                      +++.++|.|++|||||++.+.+... ....-|...++...-.+.+.+.               ...+.+.|.||...   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7999999999999999999998765 3221121111222222333322               13578999999643   


Q ss_pred             -ccccc---hhhhcCccEEEEEEeCC
Q psy9621          71 -FHTIT---TSYYRGAMGIMLVYDIT   92 (253)
Q Consensus        71 -~~~~~---~~~~~~~d~~ilv~d~~   92 (253)
                       ..++.   -..++.+|+++.|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence             22333   33468999999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0460|consensus

Probab=98.25  E-value=4.6e-06  Score=68.39  Aligned_cols=119  Identities=14%  Similarity=0.079  Sum_probs=75.6

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhc----------CCCCCc----ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSD----------DAFNTT----FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF   71 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~----------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   71 (253)
                      .-+..||.-||+-.=|||||..++..          .++.+.    -...-|++...-.+.+.-....+--.|+|||..|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY  130 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence            34678999999999999999988852          111111    0123355666556666555566777899999988


Q ss_pred             cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ..-.-.-..+.|++|+|+.++|..--+. ++-+-.-++.  .-..++++.||.|+.
T Consensus       131 IKNMItGaaqMDGaILVVaatDG~MPQT-rEHlLLArQV--GV~~ivvfiNKvD~V  183 (449)
T KOG0460|consen  131 IKNMITGAAQMDGAILVVAATDGPMPQT-REHLLLARQV--GVKHIVVFINKVDLV  183 (449)
T ss_pred             HHHhhcCccccCceEEEEEcCCCCCcch-HHHHHHHHHc--CCceEEEEEeccccc
Confidence            5443334567899999999998542111 2111111121  124567779999987

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.24  E-value=2.6e-06  Score=82.86  Aligned_cols=111  Identities=17%  Similarity=0.182  Sum_probs=69.6

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCCCcc------cCccceeeEEEEEeeCCeEEEEEEEeCCCcc--------cccccchh
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDDAFNTTF------ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE--------RFHTITTS   77 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~   77 (253)
                      .+|||++|+|||||+.+- +-.++-..      ...++-+.. ..+-+.+   .-.++||+|.-        .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence            589999999999999876 33333211      111111111 1121221   34589999942        11222333


Q ss_pred             hh---------cCccEEEEEEeCCChhh---------HHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          78 YY---------RGAMGIMLVYDITNEKS---------FDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        78 ~~---------~~~d~~ilv~d~~~~~s---------~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ++         +..|++|+++|+.+...         -..++..++++....+-.+|+.++.+|+|+.
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL  256 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence            32         46899999999875321         1345577777888777899999999999986

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.21  E-value=1.5e-05  Score=63.46  Aligned_cols=88  Identities=17%  Similarity=0.046  Sum_probs=54.1

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcC--CCCCc---ccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc------
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDD--AFNTT---FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI------   74 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------   74 (253)
                      ..+..-|.|+|++++|||+|+|++++.  .|...   ...|.|+-.....+.. +....+.++||+|.......      
T Consensus         4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~   82 (224)
T cd01851           4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDA   82 (224)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhh
Confidence            345667999999999999999999987  55432   1223443333222211 24567999999997543221      


Q ss_pred             chhhhc--CccEEEEEEeCCCh
Q psy9621          75 TTSYYR--GAMGIMLVYDITNE   94 (253)
Q Consensus        75 ~~~~~~--~~d~~ilv~d~~~~   94 (253)
                      ....+.  -++.+|+..+.+..
T Consensus        83 ~~~~l~~llss~~i~n~~~~~~  104 (224)
T cd01851          83 RLFALATLLSSVLIYNSWETIL  104 (224)
T ss_pred             HHHHHHHHHhCEEEEeccCccc
Confidence            112222  37777777665543

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.18  E-value=2e-05  Score=67.99  Aligned_cols=113  Identities=16%  Similarity=0.139  Sum_probs=62.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc------CCCC----Cccc-----------CccceeeEEEEEee-------------C
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD------DAFN----TTFI-----------STIGIDFKIKTVDL-------------K   54 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~------~~~~----~~~~-----------~~~~~~~~~~~~~~-------------~   54 (253)
                      ..-|+++|++||||||++.+|..      .+..    ..++           ...++.+....-..             .
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            45789999999999999988741      1110    0111           11222222110000             0


Q ss_pred             CeEEEEEEEeCCCcccccc-cch---h--hhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          55 GKKIKLQIWDTAGQERFHT-ITT---S--YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        55 ~~~~~~~l~Dt~G~~~~~~-~~~---~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ...+.+.++||+|...... +..   .  -...++-++||+|++....-....   ..+.+   .--+.-+|+||.|..
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~---~~~~~g~IlTKlD~~  252 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKD---SVDVGSVIITKLDGH  252 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHh---ccCCcEEEEECccCC
Confidence            1246789999999865422 111   1  123577889999987553222222   22222   124677889999976

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.16  E-value=1.4e-06  Score=65.06  Aligned_cols=23  Identities=35%  Similarity=0.622  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDA   33 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~   33 (253)
                      .++|+|++|||||||+|.|....
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            68999999999999999999753

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.16  E-value=4.3e-06  Score=70.65  Aligned_cols=58  Identities=21%  Similarity=0.293  Sum_probs=34.5

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCCCc-ccCc-c--c--eeeEEEEEeeCCeEEEEEEEeCCCccccc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDDAFNTT-FIST-I--G--IDFKIKTVDLKGKKIKLQIWDTAGQERFH   72 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~~~~~~-~~~~-~--~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   72 (253)
                      ++|+|.+|||||||+|+|+....... ..+. .  |  .+.....+.+.++   ..++||||..++.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            78999999999999999996543211 1110 0  1  1112222233322   2489999986654

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.14  E-value=8.7e-06  Score=66.92  Aligned_cols=91  Identities=16%  Similarity=0.157  Sum_probs=60.1

Q ss_pred             chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621          75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN  154 (253)
Q Consensus        75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (253)
                      ....+..+|++++|+|+..+.+...  .++....    .+.|+++|+||+|+.                           
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~---------------------------   61 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLA---------------------------   61 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccC---------------------------
Confidence            4556789999999999987654322  1112211    357999999999985                           


Q ss_pred             ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                         +...      .....+.+ +..+.+++.+||+++.|++++.+.+...+...
T Consensus        62 -------------------~~~~------~~~~~~~~-~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        62 -------------------DPAV------TKQWLKYF-EEKGIKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             -------------------CHHH------HHHHHHHH-HHcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence                               1110      00111111 22356789999999999999999988877553

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.13  E-value=5.1e-06  Score=70.26  Aligned_cols=56  Identities=25%  Similarity=0.310  Sum_probs=33.6

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCCCc-ccCc---cc--eeeEEEEEeeCCeEEEEEEEeCCCccc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDDAFNTT-FIST---IG--IDFKIKTVDLKGKKIKLQIWDTAGQER   70 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~~~~~~-~~~~---~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~   70 (253)
                      ++|+|++|||||||+|+|+....... ..+.   -|  ++.....+.+..+   ..++||||...
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~  236 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ  236 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence            79999999999999999986432211 0110   00  1222233334322   26899999754

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.12  E-value=7.6e-06  Score=60.23  Aligned_cols=48  Identities=10%  Similarity=0.200  Sum_probs=35.1

Q ss_pred             hhhhcCccEEEEEEeCCChhhHH--HHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          76 TSYYRGAMGIMLVYDITNEKSFD--NILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ...+..+|++++|+|+.++.+..  .+.+|+...    ..+.|+++++||+|+.
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~   55 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLL   55 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcC
Confidence            45678999999999998876533  333443322    2478999999999985

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK13796 GTPase YqeH; Provisional

Probab=98.11  E-value=5.1e-06  Score=70.89  Aligned_cols=57  Identities=19%  Similarity=0.262  Sum_probs=37.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCC----CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFN----TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE   69 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   69 (253)
                      .++.|+|.+|||||||+|+|+.....    ....+..|++.....+.+.++   ..++||||-.
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            47999999999999999999854311    111222344444444444332   4799999963

>KOG1487|consensus

Probab=98.10  E-value=8.1e-06  Score=64.56  Aligned_cols=200  Identities=19%  Similarity=0.180  Sum_probs=106.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCcc-ceeeEEEEEeeCCeEEEEEEEeCCCcccc----cc---cchhhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTI-GIDFKIKTVDLKGKKIKLQIWDTAGQERF----HT---ITTSYYRG   81 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~---~~~~~~~~   81 (253)
                      -+|-++|-|.+|||||+..+.+. +.+.  +.. +.+.....-..+.+..++++.|.||..+-    .+   ..-...+-
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~-~s~v--asyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavart  136 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGT-FSEV--AAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART  136 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCC-CCcc--ccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeec
Confidence            48999999999999999999863 2211  111 11111111112234467999999996432    11   12234578


Q ss_pred             ccEEEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeecccccccc------ccc---cccccccceeeEEEEe
Q psy9621          82 AMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERF------HTI---TTSYYRGAMGIMLVYD  151 (253)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~------~~~---~~~~~~~~~~~~~~~~  151 (253)
                      |+.+++|.|+..|-+-..+- +.++-+--...+..|-+. ..|-|..+-.-.      ..+   ...|...++..-+.+|
T Consensus       137 cnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~-~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~D  215 (358)
T KOG1487|consen  137 CNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIG-TKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFD  215 (358)
T ss_pred             ccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCcc-ccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecC
Confidence            99999999998886544432 222222111123333333 333333322111      111   1235556667777788


Q ss_pred             ccCccchhhHHH---HHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         152 ITNEKSFDNILK---WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       152 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                      .|.++...-+..   +...+.....         +..-..+++--.+. ...+.+||.+++|+|++++.+...+.
T Consensus       216 aT~DdLIdvVegnr~yVp~iyvLNk---------IdsISiEELdii~~iphavpISA~~~wn~d~lL~~mweyL~  281 (358)
T KOG1487|consen  216 ATADDLIDVVEGNRIYVPCIYVLNK---------IDSISIEELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLK  281 (358)
T ss_pred             cchhhhhhhhccCceeeeeeeeecc---------cceeeeeccceeeeccceeecccccccchHHHHHHHhhcch
Confidence            777655554421   1111111110         11111111111122 24589999999999999999998664

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.08  E-value=8.3e-06  Score=69.51  Aligned_cols=57  Identities=18%  Similarity=0.294  Sum_probs=36.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCC----CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFN----TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE   69 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   69 (253)
                      .++.|+|.+|||||||+|+++.....    ....+..|.+.....+.+..   .+.++||||-.
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence            58999999999999999999874321    11122223333333333321   25799999964

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.07  E-value=8.2e-06  Score=65.78  Aligned_cols=58  Identities=22%  Similarity=0.293  Sum_probs=34.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCc--ccC----ccceeeEEEEEeeCCeEEEEEEEeCCCccccc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTT--FIS----TIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH   72 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   72 (253)
                      .++|+|++|||||||+|++........  ...    ....+.....+.+.+    -.++||||...+.
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~  185 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFG  185 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccC
Confidence            689999999999999999986432211  000    000122222233322    3799999976543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.06  E-value=1.4e-05  Score=68.89  Aligned_cols=23  Identities=35%  Similarity=0.387  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-.++|+|++|+||||++.+|..
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999987754

>KOG3929|consensus

Probab=98.06  E-value=1.9e-06  Score=67.96  Aligned_cols=119  Identities=18%  Similarity=0.309  Sum_probs=75.1

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEE-EEEEeCCCcccccccchhhhcC---
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIK-LQIWDTAGQERFHTITTSYYRG---   81 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~Dt~G~~~~~~~~~~~~~~---   81 (253)
                      ......|++.|..+  |||+|++++.+.-... .|+...+|..-...-.++... .++|+.+|......+.+..++.   
T Consensus        42 ~~~E~~I~~~Gn~~--~tt~I~~~FdR~e~~~-~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l  118 (363)
T KOG3929|consen   42 EKFEFFIGSKGNGG--KTTIILRCFDRDEPPK-PPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL  118 (363)
T ss_pred             ccceeEEEEecCCc--eeEeehhhcCcccCCC-CCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence            34566888988776  5999999987654444 677777776443322222222 4799999986655554443332   


Q ss_pred             -ccEEEEEEeCCChhh-HHHHHHHHHHHHHhc-------------------------------------ccccceeEEee
Q psy9621          82 -AMGIMLVYDITNEKS-FDNILKWLRNIDEHA-------------------------------------NEDVEKMILGK  122 (253)
Q Consensus        82 -~d~~ilv~d~~~~~s-~~~~~~~~~~i~~~~-------------------------------------~~~~p~iiv~n  122 (253)
                       .-.+|++.|+++++. |..+...++.++++.                                     .-.+|++||+.
T Consensus       119 ~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgs  198 (363)
T KOG3929|consen  119 RTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGS  198 (363)
T ss_pred             hhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEecc
Confidence             235788899999865 334433333332111                                     12699999999


Q ss_pred             eeccc
Q psy9621         123 TKDTA  127 (253)
Q Consensus       123 K~D~~  127 (253)
                      |.|..
T Consensus       199 KYDvF  203 (363)
T KOG3929|consen  199 KYDVF  203 (363)
T ss_pred             chhhh
Confidence            99986

>KOG1491|consensus

Probab=98.05  E-value=2.1e-05  Score=64.63  Aligned_cols=85  Identities=18%  Similarity=0.185  Sum_probs=56.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCC---------------eEEEEEEEeCCCc----
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKG---------------KKIKLQIWDTAGQ----   68 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~Dt~G~----   68 (253)
                      ..+++.+||.|+||||||+|.+.+....+.--|-..++...-.+.+.+               ....+.++|++|.    
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            467999999999999999999998665544333322333222333221               1346899998874    


Q ss_pred             ccccccchhh---hcCccEEEEEEeCC
Q psy9621          69 ERFHTITTSY---YRGAMGIMLVYDIT   92 (253)
Q Consensus        69 ~~~~~~~~~~---~~~~d~~ilv~d~~   92 (253)
                      +.-.++-..|   ++.+|+++-|+++.
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEec
Confidence            3445555555   47899999888754

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.04  E-value=5.4e-05  Score=66.18  Aligned_cols=108  Identities=17%  Similarity=0.174  Sum_probs=67.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      +.+=++|+|+||+|||||+..+........    +.--..+.++ +.++...+.+..+|.  ....+. ...+-+|.+++
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~tk~t----i~~i~GPiTv-vsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlL  139 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQT----IDEIRGPITV-VSGKTRRITFLECPS--DLHQMI-DVAKIADLVLL  139 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHHHhh----hhccCCceEE-eecceeEEEEEeChH--HHHHHH-hHHHhhheeEE
Confidence            456678999999999999998875322211    1111122333 456777899999993  222222 24577999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                      ++|.+-...++.+. ++.-+..|   +.| ++-|+++.|+.
T Consensus       140 lIdgnfGfEMETmE-FLnil~~H---GmPrvlgV~ThlDlf  176 (1077)
T COG5192         140 LIDGNFGFEMETME-FLNILISH---GMPRVLGVVTHLDLF  176 (1077)
T ss_pred             EeccccCceehHHH-HHHHHhhc---CCCceEEEEeecccc
Confidence            99987654444432 33333333   455 56688999987

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.04  E-value=2.6e-05  Score=60.63  Aligned_cols=64  Identities=16%  Similarity=0.052  Sum_probs=35.3

Q ss_pred             EEEEEEeCCCcccccccc----hhh--hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          58 IKLQIWDTAGQERFHTIT----TSY--YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~~----~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ..+.++||+|........    ..+  ....+-+++|.+++....  .+. ....+.+..  + +--++.+|.|..
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~-~~~~~~~~~--~-~~~lIlTKlDet  153 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLE-QALAFYEAF--G-IDGLILTKLDET  153 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHH-HHHHHHHHS--S-TCEEEEESTTSS
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHH-HHHHHhhcc--c-CceEEEEeecCC
Confidence            568999999986542211    111  125778888888876532  222 112222221  2 345668999976

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG0447|consensus

Probab=98.03  E-value=5.2e-05  Score=66.02  Aligned_cols=162  Identities=19%  Similarity=0.256  Sum_probs=94.3

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc-------------------------------ccCc-----------
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT-------------------------------FIST-----------   41 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~-------------------------------~~~~-----------   41 (253)
                      .+++...+|+|+|+..+||||.+..+......+-                               ++-|           
T Consensus       303 nt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e  382 (980)
T KOG0447|consen  303 NTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHE  382 (980)
T ss_pred             cccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHH
Confidence            3678889999999999999999987753222110                               0000           


Q ss_pred             ----------cceeeEEEEE--eeCCe-EEEEEEEeCCCcc-------------cccccchhhhcCccEEEEEEeCCChh
Q psy9621          42 ----------IGIDFKIKTV--DLKGK-KIKLQIWDTAGQE-------------RFHTITTSYYRGAMGIMLVYDITNEK   95 (253)
Q Consensus        42 ----------~~~~~~~~~~--~~~~~-~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~d~~~~~   95 (253)
                                -|.+..+.++  ++.+. -....+.|.||-.             ....+...++.+++++|+|+.-.+-+
T Consensus       383 ~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVD  462 (980)
T KOG0447|consen  383 IELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVD  462 (980)
T ss_pred             HHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcc
Confidence                      0222222222  22221 2356789999842             23445567899999999998533322


Q ss_pred             h-HHHHHHHHHHHHHhcccccceeEEeeeecccccccc--ccccc-----cccccceeeEEEEe--ccCccchhhHHHHH
Q psy9621          96 S-FDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERF--HTITT-----SYYRGAMGIMLVYD--ITNEKSFDNILKWL  165 (253)
Q Consensus        96 s-~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  165 (253)
                      . -..+......+   -..+.-.|+|++|.|++...-+  .-+..     .|+-.+.|.+.+..  -.+.++.++++++-
T Consensus       463 AERSnVTDLVsq~---DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGnssdSIdaIR~YE  539 (980)
T KOG0447|consen  463 AERSIVTDLVSQM---DPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNSSESIEAIREYE  539 (980)
T ss_pred             hhhhhHHHHHHhc---CCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCCcchhHHHHHHHH
Confidence            1 11122333332   2356789999999999866322  22222     24555555554433  33567888887766


Q ss_pred             Hhh
Q psy9621         166 RNI  168 (253)
Q Consensus       166 ~~~  168 (253)
                      +++
T Consensus       540 E~F  542 (980)
T KOG0447|consen  540 EEF  542 (980)
T ss_pred             HHH
Confidence            544

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.03  E-value=2.7e-05  Score=59.30  Aligned_cols=65  Identities=15%  Similarity=0.144  Sum_probs=38.4

Q ss_pred             EEEEEEEeCCCccccc----ccchhhh--cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          57 KIKLQIWDTAGQERFH----TITTSYY--RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~----~~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ...+.++|++|...+.    .....+.  ...+.+++|+|......   ...+...+.+..  + ..-++.||.|..
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~  152 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGD  152 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCC
Confidence            3457889999975321    1111122  24899999999865432   223444444333  2 366777999976

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.03  E-value=1.8e-05  Score=59.42  Aligned_cols=64  Identities=13%  Similarity=0.107  Sum_probs=36.9

Q ss_pred             EEEEEEEeCCCcccccccchhh--------hcCccEEEEEEeCCChhhHH-HHHHHHHHHHHhcccccceeEEeeeecc
Q psy9621          57 KIKLQIWDTAGQERFHTITTSY--------YRGAMGIMLVYDITNEKSFD-NILKWLRNIDEHANEDVEKMILGKTKDT  126 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~~ilv~d~~~~~s~~-~~~~~~~~i~~~~~~~~p~iiv~nK~D~  126 (253)
                      .....++||+|-.+-......+        .-..+.++.++|+.+-.... ....+..++      ...-+|+.||.|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi------~~ad~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQI------AFADRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHH------HHCCEEEEecccC
Confidence            3466889999976443333221        23478899999976543321 222233333      2344678899995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK13796 GTPase YqeH; Provisional

Probab=98.02  E-value=1.9e-05  Score=67.44  Aligned_cols=87  Identities=15%  Similarity=0.197  Sum_probs=57.1

Q ss_pred             cCcc-EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          80 RGAM-GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        80 ~~~d-~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      ...+ .+++|+|+.+..     ..|...+.+.. .+.|+++|+||+|+.....                           
T Consensus        67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~~~---------------------------  113 (365)
T PRK13796         67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPKSV---------------------------  113 (365)
T ss_pred             cccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCCcc---------------------------
Confidence            4445 888899987643     23444555444 3689999999999961100                           


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHHH
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                      ...     ........+++.+++   .++.+||+++.|++++++.|.+.
T Consensus       114 ----------------~~~-----~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        114 ----------------KKN-----KVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             ----------------CHH-----HHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence                            000     111233344556665   68999999999999999998664

>KOG0099|consensus

Probab=98.01  E-value=2.3e-05  Score=62.09  Aligned_cols=73  Identities=11%  Similarity=0.236  Sum_probs=51.2

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhh-------HHHHHH---HHHHHHHhc-ccccceeEEeeeec
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS-------FDNILK---WLRNIDEHA-NEDVEKMILGKTKD  125 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s-------~~~~~~---~~~~i~~~~-~~~~p~iiv~nK~D  125 (253)
                      .+.++++|.+|+..-+.-|-..+.+.-++|||...++..-       -..+++   ++..+-+.. -..+.+|+++||.|
T Consensus       201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD  280 (379)
T KOG0099|consen  201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  280 (379)
T ss_pred             ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence            4679999999998888888889999999999998765321       122222   222221111 14689999999999


Q ss_pred             cccc
Q psy9621         126 TAGQ  129 (253)
Q Consensus       126 ~~~~  129 (253)
                      +...
T Consensus       281 llae  284 (379)
T KOG0099|consen  281 LLAE  284 (379)
T ss_pred             HHHH
Confidence            9744

>PRK01889 GTPase RsgA; Reviewed

Probab=98.01  E-value=3.2e-05  Score=65.78  Aligned_cols=46  Identities=15%  Similarity=0.200  Sum_probs=34.9

Q ss_pred             hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ..++|.+++|+++..+-....+.+++..+..   .++|.+||+||+|+.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~  155 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLC  155 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcC
Confidence            5688999999999754455556666655544   468889999999996

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.01  E-value=4.1e-05  Score=65.03  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.++|+|++||||||++.+|..
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~  159 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999999864

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.00  E-value=0.00015  Score=61.62  Aligned_cols=25  Identities=20%  Similarity=0.274  Sum_probs=21.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +-.|=|.||||..+|||||+.||..
T Consensus        15 ~GdIYiGVVGPVRTGKSTFIKRFMe   39 (492)
T PF09547_consen   15 GGDIYIGVVGPVRTGKSTFIKRFME   39 (492)
T ss_pred             CCceEEEeecCcccCchhHHHHHHH
Confidence            4467799999999999999999964

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG1534|consensus

Probab=97.96  E-value=1.6e-05  Score=61.08  Aligned_cols=31  Identities=19%  Similarity=0.280  Sum_probs=23.3

Q ss_pred             HhC-CceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         194 EYG-VRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       194 ~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                      .++ +.+.+......++|+.++..|=..+.-.
T Consensus       222 d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~  253 (273)
T KOG1534|consen  222 DYSMVNFLPLDSSDEESINIILSYIDDAIQYG  253 (273)
T ss_pred             cccceeeeecCCCCHHHHHHHHHHHHHHHHhc
Confidence            344 5888888888889999888876666543

>KOG0448|consensus

Probab=97.95  E-value=0.00015  Score=64.72  Aligned_cols=65  Identities=18%  Similarity=0.331  Sum_probs=42.0

Q ss_pred             EEEEEeCCCcc---cccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          59 KLQIWDTAGQE---RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        59 ~~~l~Dt~G~~---~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .+.++|.||..   +...-...++..+|++|+|.++.+..+... ..++..+.+   ....+.|+-||.|..
T Consensus       207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~---~KpniFIlnnkwDas  274 (749)
T KOG0448|consen  207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE---EKPNIFILNNKWDAS  274 (749)
T ss_pred             cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc---cCCcEEEEechhhhh
Confidence            46789999964   334444567889999999998876654443 234443333   234456666777976

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.94  E-value=6.7e-05  Score=62.03  Aligned_cols=113  Identities=18%  Similarity=0.180  Sum_probs=68.9

Q ss_pred             chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621          75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN  154 (253)
Q Consensus        75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (253)
                      ....+..+|++|+|+|+..+.+...  .++...   . .+.|+++|.||+|+.                           
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~---~-~~kp~iiVlNK~DL~---------------------------   64 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKI---I-GNKPRLLILNKSDLA---------------------------   64 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHH---h-CCCCEEEEEEchhcC---------------------------
Confidence            4556789999999999977654322  122222   1 268999999999985                           


Q ss_pred             ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC---CCC
Q psy9621         155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPL  231 (253)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~---~~~  231 (253)
                                         +..      ..... .+..++.+.+++.+||+++.|++++.+.+...+.......   ...
T Consensus        65 -------------------~~~------~~~~~-~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~  118 (287)
T PRK09563         65 -------------------DPE------VTKKW-IEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMR  118 (287)
T ss_pred             -------------------CHH------HHHHH-HHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccC
Confidence                               110      00011 1111233567899999999999999999888775543211   112


Q ss_pred             CCCCeEeecCCCCCC
Q psy9621         232 EAPDRVTIDKKPDRG  246 (253)
Q Consensus       232 ~~~~~~~~~~~~~~~  246 (253)
                      ....++-+-..++.|
T Consensus       119 ~~~~~~~~~G~pnvG  133 (287)
T PRK09563        119 PRAIRAMIIGIPNVG  133 (287)
T ss_pred             cCceEEEEECCCCCC
Confidence            223455555555555

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.92  E-value=9.3e-05  Score=56.07  Aligned_cols=52  Identities=27%  Similarity=0.477  Sum_probs=32.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT   65 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt   65 (253)
                      ||++-|++|+|||||++++....-... .+.-|  +.+..+.-++..+.+.+.|.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~v~G--f~t~evr~~g~r~GF~iv~l   52 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKG-LPVGG--FYTEEVRENGRRIGFDIVDL   52 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTC-GGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccC-Cccce--EEeecccCCCceEEEEEEEC
Confidence            689999999999999999874321111 11112  44444445556666777776

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>TIGR00959 ffh signal recognition particle protein

Probab=97.91  E-value=4.5e-05  Score=66.15  Aligned_cols=65  Identities=17%  Similarity=0.184  Sum_probs=38.1

Q ss_pred             EEEEEEEeCCCcccccc-cchh-----hhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          57 KIKLQIWDTAGQERFHT-ITTS-----YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~-~~~~-----~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .+.+.++||+|...... +...     ....++.+++|+|.+...   ....+...+....  + ..-+|.||.|..
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~-i~giIlTKlD~~  252 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--G-LTGVVLTKLDGD  252 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--C-CCEEEEeCccCc
Confidence            35689999999754322 1111     123578889999987542   3333334443322  2 346778999964

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.90  E-value=0.00015  Score=63.92  Aligned_cols=22  Identities=27%  Similarity=0.449  Sum_probs=19.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhh
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~   30 (253)
                      .-.|+|+|++|+||||++.+|.
T Consensus       350 G~vIaLVGPtGvGKTTtaakLA  371 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLA  371 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3478999999999999998875

>PRK13695 putative NTPase; Provisional

Probab=97.89  E-value=0.00035  Score=53.26  Aligned_cols=22  Identities=32%  Similarity=0.706  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +||++.|.+|+|||||+..+..
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998653

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.89  E-value=2.8e-05  Score=64.25  Aligned_cols=60  Identities=30%  Similarity=0.308  Sum_probs=36.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcc-cC-c--cc--eeeEEEEEeeCCeEEEEEEEeCCCccccc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTF-IS-T--IG--IDFKIKTVDLKGKKIKLQIWDTAGQERFH   72 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~-~~-~--~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   72 (253)
                      -.++++|++|+|||||+|.+++....... .+ .  .|  .+.....+.+...   ..++||||..++.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            46899999999999999999875433211 10 0  11  1222222333221   3689999986543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0466|consensus

Probab=97.86  E-value=7.8e-06  Score=66.12  Aligned_cols=163  Identities=15%  Similarity=0.122  Sum_probs=93.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCC---CCCccc--CccceeeEEEEE---------------------------eeC
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDA---FNTTFI--STIGIDFKIKTV---------------------------DLK   54 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~---~~~~~~--~~~~~~~~~~~~---------------------------~~~   54 (253)
                      +-++||.-+|+.--||||++.++.+-+   |..+..  -|+-..|.+..+                           +..
T Consensus        36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~  115 (466)
T KOG0466|consen   36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP  115 (466)
T ss_pred             eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence            568999999999999999998886422   111000  011001111000                           000


Q ss_pred             ---C---eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCC----hhhHHHHHHHHHHHHHhcccccceeEEeeee
Q psy9621          55 ---G---KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITN----EKSFDNILKWLRNIDEHANEDVEKMILGKTK  124 (253)
Q Consensus        55 ---~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~  124 (253)
                         +   -...+.+.|+||++-.-...-.-..-.|++++++..+.    |.+-+.+..  -++-    .-..++|+-||+
T Consensus       116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM----~LkhiiilQNKi  189 (466)
T KOG0466|consen  116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIM----KLKHIIILQNKI  189 (466)
T ss_pred             CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHh----hhceEEEEechh
Confidence               0   01357789999997553322222223466666665553    233333221  1111    235788999999


Q ss_pred             ccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh---CCceEE
Q psy9621         125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY---GVRFME  201 (253)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  201 (253)
                      |+...+.+                                            .     -..+....|.+.-   +.|+++
T Consensus       190 Dli~e~~A--------------------------------------------~-----eq~e~I~kFi~~t~ae~aPiiP  220 (466)
T KOG0466|consen  190 DLIKESQA--------------------------------------------L-----EQHEQIQKFIQGTVAEGAPIIP  220 (466)
T ss_pred             hhhhHHHH--------------------------------------------H-----HHHHHHHHHHhccccCCCceee
Confidence            99732211                                            0     1223334444443   469999


Q ss_pred             eeccCCCCHHHHHHHHHHHHHhc
Q psy9621         202 TSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       202 ~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                      +||.-..|++-+.+.|.+.+.--
T Consensus       221 isAQlkyNId~v~eyivkkIPvP  243 (466)
T KOG0466|consen  221 ISAQLKYNIDVVCEYIVKKIPVP  243 (466)
T ss_pred             ehhhhccChHHHHHHHHhcCCCC
Confidence            99999999999999999988653

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.86  E-value=0.00018  Score=62.66  Aligned_cols=113  Identities=24%  Similarity=0.239  Sum_probs=60.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc----CCCC------CcccCc-----------cceeeEEEE--Eee---------CC
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD----DAFN------TTFIST-----------IGIDFKIKT--VDL---------KG   55 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~----~~~~------~~~~~~-----------~~~~~~~~~--~~~---------~~   55 (253)
                      ....|+++|++|+||||++..+..    ....      ..+++.           .++.+....  ...         ..
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~  173 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF  173 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence            456899999999999999987742    1000      011111           111211110  000         00


Q ss_pred             eEEEEEEEeCCCcccccccc------hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccccc-ceeEEeeeeccc
Q psy9621          56 KKIKLQIWDTAGQERFHTIT------TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDV-EKMILGKTKDTA  127 (253)
Q Consensus        56 ~~~~~~l~Dt~G~~~~~~~~------~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~-p~iiv~nK~D~~  127 (253)
                      ....+.++||+|+.......      ......+|.+++|+|.+...  + .......+..    .+ ..-+|.||.|..
T Consensus       174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~-av~~a~~F~~----~l~i~gvIlTKlD~~  245 (437)
T PRK00771        174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--Q-AKNQAKAFHE----AVGIGGIIITKLDGT  245 (437)
T ss_pred             hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--H-HHHHHHHHHh----cCCCCEEEEecccCC
Confidence            12368999999986542111      11234678899999987642  1 1222222222    22 345778999975

>PRK00098 GTPase RsgA; Reviewed

Probab=97.83  E-value=4e-05  Score=63.70  Aligned_cols=23  Identities=39%  Similarity=0.588  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDA   33 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~   33 (253)
                      .++|+|++|||||||+|.+.+..
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCc
Confidence            58999999999999999998654

>KOG1424|consensus

Probab=97.81  E-value=2.3e-05  Score=67.69  Aligned_cols=57  Identities=19%  Similarity=0.209  Sum_probs=46.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE   69 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   69 (253)
                      .+.|.+||-|||||||+||.|.+.+.... ..|.|-+.+.+++.+.   -.+.+.|+||.-
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls---~~v~LCDCPGLV  370 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLS---PSVCLCDCPGLV  370 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcC---CCceecCCCCcc
Confidence            58999999999999999999998766544 5677777777777655   347899999963

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=4.5e-05  Score=72.92  Aligned_cols=115  Identities=19%  Similarity=0.197  Sum_probs=67.4

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCCCccc-CccceeeE-EEEEeeCCeEEEEEEEeCCCcccc--------cccchh----
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDDAFNTTFI-STIGIDFK-IKTVDLKGKKIKLQIWDTAGQERF--------HTITTS----   77 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~----   77 (253)
                      -+|||++|+||||++.. .+..|+-... ...+..-. +..++.-. .-.-.++||.|...-        ...|..    
T Consensus       128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf-~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l  205 (1188)
T COG3523         128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWF-TDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL  205 (1188)
T ss_pred             eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCccc-ccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence            37999999999999853 3333332100 00000000 11121111 123678899985211        112222    


Q ss_pred             -----hhcCccEEEEEEeCCChhh---------HHHHHHHHHHHHHhcccccceeEEeeeecccc
Q psy9621          78 -----YYRGAMGIMLVYDITNEKS---------FDNILKWLRNIDEHANEDVEKMILGKTKDTAG  128 (253)
Q Consensus        78 -----~~~~~d~~ilv~d~~~~~s---------~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  128 (253)
                           ..+..|++|+.+|+.+.-+         ...++.-++++....+-.+|+++++||.|+..
T Consensus       206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                 2467899999999875321         22244567777777778999999999999973

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.77  E-value=0.00035  Score=59.54  Aligned_cols=21  Identities=43%  Similarity=0.689  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHhh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~   30 (253)
                      .+|+|+|++||||||++.+|.
T Consensus       242 ~vI~LVGptGvGKTTTiaKLA  262 (436)
T PRK11889        242 QTIALIGPTGVGKTTTLAKMA  262 (436)
T ss_pred             cEEEEECCCCCcHHHHHHHHH
Confidence            579999999999999999885

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.76  E-value=2.6e-05  Score=63.62  Aligned_cols=21  Identities=33%  Similarity=0.569  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.+++|++|||||||+|+|..
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p  186 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLP  186 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCc
Confidence            578999999999999999985

>PRK10867 signal recognition particle protein; Provisional

Probab=97.75  E-value=0.00011  Score=63.85  Aligned_cols=65  Identities=17%  Similarity=0.169  Sum_probs=36.3

Q ss_pred             EEEEEEEeCCCcccccc-cchh---h--hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          57 KIKLQIWDTAGQERFHT-ITTS---Y--YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~-~~~~---~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .+.+.++||+|...... +...   +  .-.++.+++|+|.....   .+......+....  + ..-+|.||.|..
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~-i~giIlTKlD~~  253 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--G-LTGVILTKLDGD  253 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--C-CCEEEEeCccCc
Confidence            35689999999754321 1111   1  12567789999986542   2223333333221  2 345677999964

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=97.75  E-value=7.9e-05  Score=64.35  Aligned_cols=75  Identities=11%  Similarity=0.173  Sum_probs=55.1

Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh----------hHHHHHHHHHHHHHh-cccccceeEEeeee
Q psy9621          56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK----------SFDNILKWLRNIDEH-ANEDVEKMILGKTK  124 (253)
Q Consensus        56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~----------s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~  124 (253)
                      ....+.++|++|+...+.-|-.++.+++++|||+++++-+          .+......+..+... .-.+.|++|++||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            4567999999999888888999999999999999987532          133333444444332 22579999999999


Q ss_pred             cccccc
Q psy9621         125 DTAGQE  130 (253)
Q Consensus       125 D~~~~~  130 (253)
                      |+....
T Consensus       314 D~f~~K  319 (389)
T PF00503_consen  314 DLFEEK  319 (389)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            997553

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.74  E-value=0.00027  Score=57.83  Aligned_cols=93  Identities=14%  Similarity=0.108  Sum_probs=66.8

Q ss_pred             cchhhhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621          74 ITTSYYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI  152 (253)
Q Consensus        74 ~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (253)
                      +.+--..+.|-.|+++.+.+|+ +...+.+++-....   .++..+|++||+|+.                         
T Consensus        72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~-------------------------  123 (301)
T COG1162          72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLL-------------------------  123 (301)
T ss_pred             eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccC-------------------------
Confidence            3344455678888888888876 45555566555444   578888899999997                         


Q ss_pred             cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                           ...+     ....+...+...+|++++.+|++++.|++++...+...
T Consensus       124 ---------------------~~~~-----~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         124 ---------------------DDEE-----AAVKELLREYEDIGYPVLFVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             ---------------------cchH-----HHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCC
Confidence                                 2222     11144566777889999999999999999998877654

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.72  E-value=9.9e-05  Score=63.38  Aligned_cols=22  Identities=23%  Similarity=0.511  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-++|+|++||||||++.+|..
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999998863

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.70  E-value=0.0003  Score=61.20  Aligned_cols=20  Identities=40%  Similarity=0.712  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhh
Q psy9621          11 KLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~   30 (253)
                      .++|+|++||||||++.+|.
T Consensus       223 ~i~~vGptGvGKTTt~~kLA  242 (424)
T PRK05703        223 VVALVGPTGVGKTTTLAKLA  242 (424)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78999999999999887764

>KOG1533|consensus

Probab=97.70  E-value=4.3e-05  Score=59.71  Aligned_cols=68  Identities=10%  Similarity=0.132  Sum_probs=39.4

Q ss_pred             EEEEEEeCCCcccccc----cch--hhhcCccEEEEEEeC------CChhhHHHHHHHHHHHHHhcccccceeEEeeeec
Q psy9621          58 IKLQIWDTAGQERFHT----ITT--SYYRGAMGIMLVYDI------TNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD  125 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~----~~~--~~~~~~d~~ilv~d~------~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D  125 (253)
                      -...++|+|||-++..    ++.  .++..-+.-+.++++      ++|..|...  .+..+.....-+.|.+-+++|+|
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~--lL~sl~tMl~melphVNvlSK~D  174 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS--LLVSLATMLHMELPHVNVLSKAD  174 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH--HHHHHHHHHhhcccchhhhhHhH
Confidence            4578999999865421    111  223334444444443      456665553  22333333334789999999999


Q ss_pred             cc
Q psy9621         126 TA  127 (253)
Q Consensus       126 ~~  127 (253)
                      +.
T Consensus       175 l~  176 (290)
T KOG1533|consen  175 LL  176 (290)
T ss_pred             HH
Confidence            97

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.69  E-value=0.0001  Score=64.64  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~   30 (253)
                      --++|+|++||||||++.+|.
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA  277 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLA  277 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHH
Confidence            358999999999999998876

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.67  E-value=0.00033  Score=59.47  Aligned_cols=111  Identities=16%  Similarity=0.281  Sum_probs=59.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCcc-----------------------ceeeEEEEEee---------CCe
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTI-----------------------GIDFKIKTVDL---------KGK   56 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~-----------------------~~~~~~~~~~~---------~~~   56 (253)
                      .-.|++|||+||||||-+.+|-....-..-.+.+                       ++.+.  .+.-         ...
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai~~l~  280 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAIEALR  280 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHHHHhh
Confidence            5579999999999999887764321100001111                       11111  1100         122


Q ss_pred             EEEEEEEeCCCcccccccc----hhhhcC--ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          57 KIKLQIWDTAGQERFHTIT----TSYYRG--AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~----~~~~~~--~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      +..+.++||.|+..+....    ..++..  ..-.-+|++++..  ...+...++.+..   -++-- ++.+|.|-+
T Consensus       281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~---~~i~~-~I~TKlDET  351 (407)
T COG1419         281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL---FPIDG-LIFTKLDET  351 (407)
T ss_pred             cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc---CCcce-eEEEccccc
Confidence            4579999999997765443    223332  2334556677654  3445555444422   23333 456899976

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.67  E-value=7.3e-05  Score=63.28  Aligned_cols=22  Identities=41%  Similarity=0.629  Sum_probs=19.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhh
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~   30 (253)
                      .-.++++|++|+||||++.++.
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA  227 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLG  227 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4468999999999999998875

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.58  E-value=0.00031  Score=64.76  Aligned_cols=21  Identities=38%  Similarity=0.624  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -|+|+|++||||||.+.++..
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~  207 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAA  207 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            589999999999999988763

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.57  E-value=0.00029  Score=57.47  Aligned_cols=111  Identities=21%  Similarity=0.247  Sum_probs=59.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCC---------C------------cccCccceeeEEEEEee-----------CCeE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFN---------T------------TFISTIGIDFKIKTVDL-----------KGKK   57 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~---------~------------~~~~~~~~~~~~~~~~~-----------~~~~   57 (253)
                      -+++++|++|+||||++..+......         .            .+....++++... ...           ....
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence            58999999999999999877432100         0            0111112221110 000           1124


Q ss_pred             EEEEEEeCCCccccccc-c---hhhh--cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          58 IKLQIWDTAGQERFHTI-T---TSYY--RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~-~---~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ..+.++||+|....... .   ..++  -..+-.++|+|++...  ..+..++..+..    --+--++.+|.|..
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet  224 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDET  224 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCC
Confidence            57899999998643211 1   1122  2456688899976431  222233333322    23455777999976

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.55  E-value=0.00035  Score=48.36  Aligned_cols=82  Identities=18%  Similarity=0.195  Sum_probs=51.1

Q ss_pred             EEEEc-CCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621          12 LLLIG-DSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD   90 (253)
Q Consensus        12 i~vvG-~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   90 (253)
                      |+|.| ..|+||||+...+...-.. .-.+..-++..        ....+.++|+|+....  .....+..+|.+|++.+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d~d--------~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLIDLD--------PQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEeCC--------CCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence            56777 5689999998776532111 11122222211        1156899999986432  23367788999999988


Q ss_pred             CCChhhHHHHHHHHH
Q psy9621          91 ITNEKSFDNILKWLR  105 (253)
Q Consensus        91 ~~~~~s~~~~~~~~~  105 (253)
                      .+ ..++..+.++++
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            64 666777766665

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>KOG2485|consensus

Probab=97.51  E-value=0.00021  Score=58.25  Aligned_cols=60  Identities=13%  Similarity=0.326  Sum_probs=37.7

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCC------CcccCccceeeEEEE-EeeCCeEEEEEEEeCCCc
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFN------TTFISTIGIDFKIKT-VDLKGKKIKLQIWDTAGQ   68 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~   68 (253)
                      ....+++.|+|.||+|||||+|.+...+.-      ....|  |++..... +.+..+ ..+.++||||-
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~p--GVT~~V~~~iri~~r-p~vy~iDTPGi  206 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEP--GVTRRVSERIRISHR-PPVYLIDTPGI  206 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCC--CceeeehhheEeccC-CceEEecCCCc
Confidence            456789999999999999999987642221      11122  22332222 333322 34899999995

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.50  E-value=0.001  Score=57.14  Aligned_cols=113  Identities=18%  Similarity=0.202  Sum_probs=59.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCC--------C------Cccc-----------CccceeeEEEEEe-------eCCe
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAF--------N------TTFI-----------STIGIDFKIKTVD-------LKGK   56 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~--------~------~~~~-----------~~~~~~~~~~~~~-------~~~~   56 (253)
                      .-.|+++|++||||||.+.++.....        .      ..++           ...++.+......       -...
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            35799999999999999988752110        0      0000           1112222111000       0113


Q ss_pred             EEEEEEEeCCCccccccc----chhhhcC--cc-EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          57 KIKLQIWDTAGQERFHTI----TTSYYRG--AM-GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~----~~~~~~~--~d-~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ...+.++||+|.......    ...++..  .+ -.++|+|++..  ...+...+..+.    .--+--++.+|.|..
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~----~~~~~~~I~TKlDet  325 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFS----PFSYKTVIFTKLDET  325 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhc----CCCCCEEEEEeccCC
Confidence            467899999998653221    1122221  23 57888898865  233333333321    112456778999976

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.50  E-value=0.00061  Score=50.52  Aligned_cols=58  Identities=12%  Similarity=0.099  Sum_probs=35.8

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeec
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD  125 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D  125 (253)
                      ...+.++||+|....   ...++..+|-+|++...+--+.+.-+.-  ..      ....-+++.||+|
T Consensus        91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~------~~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA--GI------MEIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh--hH------hhhcCEEEEeCCC
Confidence            457899999986422   2348899999999876652222222111  11      2345568889987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG0780|consensus

Probab=97.48  E-value=0.0002  Score=60.04  Aligned_cols=97  Identities=16%  Similarity=0.246  Sum_probs=55.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc----CCCC------CcccC-----------ccceeeEEEEEe-------------eCC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD----DAFN------TTFIS-----------TIGIDFKIKTVD-------------LKG   55 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~----~~~~------~~~~~-----------~~~~~~~~~~~~-------------~~~   55 (253)
                      --|.++|..|+||||.+-+|..    .-+.      ..++.           ..++.++...-.             +..
T Consensus       102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKk  181 (483)
T KOG0780|consen  102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKK  181 (483)
T ss_pred             cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHh
Confidence            3588999999999999987742    1110      01110           112222221110             123


Q ss_pred             eEEEEEEEeCCCcccccccchh------hhcCccEEEEEEeCCChhhHHHHHHHHHH
Q psy9621          56 KKIKLQIWDTAGQERFHTITTS------YYRGAMGIMLVYDITNEKSFDNILKWLRN  106 (253)
Q Consensus        56 ~~~~~~l~Dt~G~~~~~~~~~~------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~  106 (253)
                      .+..+.|.||+|++......-.      -.-.+|-+|+|.|++-...-+...+.+.+
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~  238 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE  238 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence            3578999999998654322111      12468999999999987665554443333

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.47  E-value=0.0004  Score=41.92  Aligned_cols=45  Identities=16%  Similarity=0.214  Sum_probs=31.1

Q ss_pred             cCccEEEEEEeCCChh--hHHHHHHHHHHHHHhcccccceeEEeeeec
Q psy9621          80 RGAMGIMLVYDITNEK--SFDNILKWLRNIDEHANEDVEKMILGKTKD  125 (253)
Q Consensus        80 ~~~d~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D  125 (253)
                      .-.+++++++|++..-  +.+.....++++...+ .+.|+++|.||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence            3567899999998754  4666678888888887 6899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG3859|consensus

Probab=97.46  E-value=0.00027  Score=56.66  Aligned_cols=64  Identities=22%  Similarity=0.431  Sum_probs=45.3

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCccc----CccceeeEEEEEeeCCeEEEEEEEeCCCc
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFI----STIGIDFKIKTVDLKGKKIKLQIWDTAGQ   68 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   68 (253)
                      .+...+||+-||.+|.|||||+..|++..+.....    |.+........+.-.+-..++.+.||.|.
T Consensus        38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf  105 (406)
T KOG3859|consen   38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF  105 (406)
T ss_pred             hcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence            45678999999999999999999999988765533    23332222222222344577899999985

>KOG0084|consensus

Probab=97.46  E-value=0.0001  Score=55.99  Aligned_cols=51  Identities=63%  Similarity=1.116  Sum_probs=48.6

Q ss_pred             ccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCC
Q psy9621         125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED  175 (253)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (253)
                      |.++|+..+.+...||+.+++++++||++..++|+.+-.|+.++.++..++
T Consensus        64 DTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~  114 (205)
T KOG0084|consen   64 DTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN  114 (205)
T ss_pred             eccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC
Confidence            999999999999999999999999999999999999999999999998655

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.44  E-value=0.00045  Score=50.65  Aligned_cols=107  Identities=13%  Similarity=0.155  Sum_probs=64.2

Q ss_pred             EEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCC
Q psy9621          13 LLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT   92 (253)
Q Consensus        13 ~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   92 (253)
                      +.-|..|+|||++...+...-. ....++.-++....   ...-.+.+.++|+|+..  .......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~~---~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADLG---LANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCCC---CCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            4567899999999876643211 11111111221110   00111668999999753  333456789999999998865


Q ss_pred             ChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          93 NEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        93 ~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                       ..++......++.+.... ...++.++.|+.+..
T Consensus        78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~  110 (139)
T cd02038          78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP  110 (139)
T ss_pred             -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence             555666555555554433 456778999998753

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.39  E-value=0.00079  Score=48.96  Aligned_cols=25  Identities=32%  Similarity=0.452  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCC
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDA   33 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~   33 (253)
                      ...+++.|++|+|||+|++.+....
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4479999999999999999998643

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG0459|consensus

Probab=97.38  E-value=0.00043  Score=58.34  Aligned_cols=122  Identities=12%  Similarity=0.068  Sum_probs=67.8

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcC--CCC------------CcccCcc---------------ceeeEEEEEeeCCe
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDD--AFN------------TTFISTI---------------GIDFKIKTVDLKGK   56 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~--~~~------------~~~~~~~---------------~~~~~~~~~~~~~~   56 (253)
                      .-..+|++|+|+-.+||||+-..++..  ..+            ...+.+.               |-+...-...+.-.
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            345789999999999999998776421  000            0000000               00111111111222


Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh---hHHHHHHHHHH-HHHhcccccceeEEeeeeccc
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK---SFDNILKWLRN-IDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~-i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ...+.+.|+||+..|....-.-..++|..++|+++-..+   .|+.=-+.... ++.....-...+++.||+|-.
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddP  230 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP  230 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCC
Confidence            356899999999888655545567889999998864321   23322111111 111122345677889999975

>KOG2484|consensus

Probab=97.37  E-value=0.00013  Score=61.24  Aligned_cols=57  Identities=21%  Similarity=0.322  Sum_probs=41.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ   68 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   68 (253)
                      .-|++.|+|-|++||||+||.|...+.... -++.|++...+.+.++   ..+.++|.||.
T Consensus       251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ld---k~i~llDsPgi  307 (435)
T KOG2484|consen  251 TSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLD---KKIRLLDSPGI  307 (435)
T ss_pred             cceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheecc---CCceeccCCce
Confidence            358999999999999999999997766433 2333555555555433   35889999985

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.36  E-value=0.0014  Score=44.19  Aligned_cols=96  Identities=13%  Similarity=0.059  Sum_probs=54.4

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc-chhhhcCccEEEEEEe
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI-TTSYYRGAMGIMLVYD   90 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~ilv~d   90 (253)
                      +++.|..|+||||+...+...-....        +.  ...++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g--------~~--v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRG--------KR--VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC--------Ce--EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            67889999999999988764211111        11  11111    6899999986433221 1456678899999888


Q ss_pred             CCChhhHHHHHHHHHHHHHhc-ccccceeEEee
Q psy9621          91 ITNEKSFDNILKWLRNIDEHA-NEDVEKMILGK  122 (253)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~n  122 (253)
                      .+. .++.............. ....+..++.|
T Consensus        68 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          68 PEA-LAVLGARRLTEVVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             Cch-hhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence            653 34444443332222222 23445555543

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>smart00072 GuKc Guanylate kinase homologues

Probab=97.34  E-value=0.0037  Score=48.12  Aligned_cols=22  Identities=36%  Similarity=0.610  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      =|+++|++||||+||.++|...
T Consensus         4 ~ivl~Gpsg~GK~tl~~~L~~~   25 (184)
T smart00072        4 PIVLSGPSGVGKGTLLAELIQE   25 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            3899999999999999999865

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>KOG0469|consensus

Probab=97.31  E-value=0.00065  Score=58.85  Aligned_cols=117  Identities=20%  Similarity=0.265  Sum_probs=76.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCC------------CCCc--ccCccceeeEEEEEee----------------CCe
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDA------------FNTT--FISTIGIDFKIKTVDL----------------KGK   56 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~------------~~~~--~~~~~~~~~~~~~~~~----------------~~~   56 (253)
                      ....|+-|+.+..-|||||...|....            |...  ....-+++.....+.+                ++.
T Consensus        17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~   96 (842)
T KOG0469|consen   17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN   96 (842)
T ss_pred             cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence            346689999999999999999986321            1111  0011123332222222                123


Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ..-++++|.|||-.|.+....+++-.|++++|+|..+.-..+.-..+.+.+..    .+.-+++.||.|.+
T Consensus        97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRA  163 (842)
T KOG0469|consen   97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRA  163 (842)
T ss_pred             ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHH
Confidence            45689999999999999999999999999999998776544443333333322    34445667999975

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.29  E-value=0.00022  Score=50.79  Aligned_cols=21  Identities=19%  Similarity=0.495  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .|+|.|++||||||+.+.+..
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999976

...

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.27  E-value=0.00021  Score=54.64  Aligned_cols=23  Identities=22%  Similarity=0.647  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      +||+|+|+|||||||+..++...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999999865

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.25  E-value=0.00097  Score=52.41  Aligned_cols=63  Identities=16%  Similarity=0.110  Sum_probs=38.0

Q ss_pred             EEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccc-cceeEEeeeeccc
Q psy9621          59 KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED-VEKMILGKTKDTA  127 (253)
Q Consensus        59 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~p~iiv~nK~D~~  127 (253)
                      .+.++||-..-  ....+....++|.+|+|+|.+ ..++....+..+....   -+ .++.+|+||.|-.
T Consensus       135 e~VivDtEAGi--EHfgRg~~~~vD~vivVvDpS-~~sl~taeri~~L~~e---lg~k~i~~V~NKv~e~  198 (255)
T COG3640         135 EVVIVDTEAGI--EHFGRGTIEGVDLVIVVVDPS-YKSLRTAERIKELAEE---LGIKRIFVVLNKVDEE  198 (255)
T ss_pred             cEEEEecccch--hhhccccccCCCEEEEEeCCc-HHHHHHHHHHHHHHHH---hCCceEEEEEeeccch
Confidence            35555553221  122234567899999999987 4455554443332222   23 7899999999854

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.24  E-value=0.00031  Score=43.50  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..+|.|+.|+|||||+.++..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998864

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.23  E-value=0.0045  Score=51.88  Aligned_cols=64  Identities=14%  Similarity=0.137  Sum_probs=36.5

Q ss_pred             EEEEEEeCCCcccccccchhhhc--------CccEEEEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          58 IKLQIWDTAGQERFHTITTSYYR--------GAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ....+++|.|-.+-..+...++.        ..+++|-|+|+.+......- .....++      ...-+|++||.|+.
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi------~~AD~IvlnK~Dl~  163 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV------GYADRILLTKTDVA  163 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH------HhCCEEEEeccccC
Confidence            45678889997654444433321        24788999998754322111 1111122      23557888999987

>PRK08118 topology modulation protein; Reviewed

Probab=97.22  E-value=0.00027  Score=53.59  Aligned_cols=21  Identities=33%  Similarity=0.710  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ||+|+|++|||||||..++..
T Consensus         3 rI~I~G~~GsGKSTlak~L~~   23 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGE   23 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999998875

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.21  E-value=0.0011  Score=46.19  Aligned_cols=99  Identities=13%  Similarity=0.079  Sum_probs=58.7

Q ss_pred             cCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh
Q psy9621          16 GDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK   95 (253)
Q Consensus        16 G~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~   95 (253)
                      +..|+||||+...+...-......++.-+|..     ..... .+.++|+|+...  ......+..+|.+|++.+.+ ..
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~~~-D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~   77 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQFGD-DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQD-LP   77 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCCCC-CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC-hH
Confidence            56679999987665432111101112111111     11111 789999998643  23345778999999998754 66


Q ss_pred             hHHHHHHHHHHHHHhccc-ccceeEEeee
Q psy9621          96 SFDNILKWLRNIDEHANE-DVEKMILGKT  123 (253)
Q Consensus        96 s~~~~~~~~~~i~~~~~~-~~p~iiv~nK  123 (253)
                      ++..+..+++.+.+.... ...+.+++|+
T Consensus        78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          78 SIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            777777777777665433 3456666664

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG2423|consensus

Probab=97.21  E-value=0.00018  Score=60.43  Aligned_cols=89  Identities=15%  Similarity=0.156  Sum_probs=54.6

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc--ccchhhhcC
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH--TITTSYYRG   81 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~~~~~~~~~   81 (253)
                      ++.-..|-|.|||-|++||||+||.|...+.... .|-.|-   ++.+++-.-...+.++|+||----.  .-....+  
T Consensus       302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGE---TKVWQYItLmkrIfLIDcPGvVyps~dset~ivL--  375 (572)
T KOG2423|consen  302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGE---TKVWQYITLMKRIFLIDCPGVVYPSSDSETDIVL--  375 (572)
T ss_pred             ccCccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCc---chHHHHHHHHhceeEecCCCccCCCCCchHHHHh--
Confidence            4556788999999999999999999998766544 222221   1222221123458899999953211  1112222  


Q ss_pred             ccEEEEEEeCCChhhHHH
Q psy9621          82 AMGIMLVYDITNEKSFDN   99 (253)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~   99 (253)
                       -+++-|=++.+++.+..
T Consensus       376 -kGvVRVenv~~pe~yi~  392 (572)
T KOG2423|consen  376 -KGVVRVENVKNPEDYID  392 (572)
T ss_pred             -hceeeeeecCCHHHHHH
Confidence             25666777888775443

>PRK07261 topology modulation protein; Provisional

Probab=97.19  E-value=0.0003  Score=53.55  Aligned_cols=22  Identities=36%  Similarity=0.619  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .||+|+|++|+|||||...+..
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999998864

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.18  E-value=0.0003  Score=51.60  Aligned_cols=20  Identities=30%  Similarity=0.614  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      |+++|+||||||||+..+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999884

...

>KOG0079|consensus

Probab=97.11  E-value=0.00028  Score=51.09  Aligned_cols=54  Identities=52%  Similarity=1.002  Sum_probs=46.6

Q ss_pred             eccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCch
Q psy9621         124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQ  177 (253)
Q Consensus       124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (253)
                      .|.++++..+++...||++-++++++|++++.++|.++..|++++...-+..+.
T Consensus        62 wDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~  115 (198)
T KOG0079|consen   62 WDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPK  115 (198)
T ss_pred             eecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccc
Confidence            377888888888888999999999999999999999999999999877654443

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.10  E-value=0.00042  Score=53.80  Aligned_cols=21  Identities=33%  Similarity=0.581  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++++|++|||||||++++-.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            589999999999999988764

>KOG0080|consensus

Probab=97.09  E-value=0.00054  Score=50.39  Aligned_cols=54  Identities=50%  Similarity=0.844  Sum_probs=50.0

Q ss_pred             eccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCch
Q psy9621         124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQ  177 (253)
Q Consensus       124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (253)
                      -|.++|+..+.+...||+.+++++++|+++..++|.++.-|..++..+...+..
T Consensus        65 WDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~di  118 (209)
T KOG0080|consen   65 WDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDI  118 (209)
T ss_pred             EeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccH
Confidence            499999999999999999999999999999999999999999999998865544

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.05  E-value=0.00039  Score=52.39  Aligned_cols=22  Identities=18%  Similarity=0.477  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999864

>KOG0085|consensus

Probab=97.04  E-value=0.00064  Score=53.20  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=21.7

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHh
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRF   29 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l   29 (253)
                      .....+|++++|.-.+||||++..+
T Consensus        35 ~arrelkllllgtgesgkstfikqm   59 (359)
T KOG0085|consen   35 DARRELKLLLLGTGESGKSTFIKQM   59 (359)
T ss_pred             hhhhhheeeeecCCCcchhhHHHHH
Confidence            3456789999999999999999876

>KOG0087|consensus

Probab=97.03  E-value=0.0009  Score=51.50  Aligned_cols=55  Identities=49%  Similarity=1.009  Sum_probs=50.7

Q ss_pred             eeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCC
Q psy9621         121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED  175 (253)
Q Consensus       121 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (253)
                      +.--|.++|+.+..+..+||+.+.+++++||++...+|+++..|+.++..|.+++
T Consensus        65 aqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~n  119 (222)
T KOG0087|consen   65 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSN  119 (222)
T ss_pred             EeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCC
Confidence            3445999999999999999999999999999999999999999999999998654

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.02  E-value=0.004  Score=54.06  Aligned_cols=54  Identities=15%  Similarity=0.157  Sum_probs=40.0

Q ss_pred             cccccchhhhcCccEEEEEEeCCCh---hhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          70 RFHTITTSYYRGAMGIMLVYDITNE---KSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        70 ~~~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      +.-......+++++++||    +.|   -+...+.+++..+.+....+..++++..|.+-.
T Consensus       147 QRVEIlKaLyr~a~iLIL----DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev  203 (501)
T COG3845         147 QRVEILKALYRGARLLIL----DEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEV  203 (501)
T ss_pred             HHHHHHHHHhcCCCEEEE----cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH
Confidence            334455667889998887    334   346677788888888877899999999998754

>KOG0098|consensus

Probab=97.00  E-value=0.00075  Score=50.95  Aligned_cols=55  Identities=51%  Similarity=0.907  Sum_probs=50.5

Q ss_pred             eeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCC
Q psy9621         121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED  175 (253)
Q Consensus       121 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (253)
                      ++--|.+++++...++..||..+.+++++|+++..++|+++..|+.++..+..++
T Consensus        57 lqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N  111 (216)
T KOG0098|consen   57 LQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN  111 (216)
T ss_pred             EEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC
Confidence            3556999999999999999999999999999999999999999999999987544

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=96.97  E-value=0.053  Score=40.78  Aligned_cols=144  Identities=11%  Similarity=0.047  Sum_probs=95.5

Q ss_pred             ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEe-CCCcccccccchhhhcC
Q psy9621           3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWD-TAGQERFHTITTSYYRG   81 (253)
Q Consensus         3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D-t~G~~~~~~~~~~~~~~   81 (253)
                      +-|......|+++|..+.++..|.+.+......          +.          +++++-- .|=-.+...    .-+.
T Consensus         9 klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~----------l~Vh~a~sLPLp~e~~~----lRpr   64 (176)
T PF11111_consen    9 KLPELNTATILLVGTEEALLQQLAEAMLEEDKE----------FK----------LKVHLAKSLPLPSENNN----LRPR   64 (176)
T ss_pred             cCCCcceeEEEEecccHHHHHHHHHHHHhhccc----------ee----------EEEEEeccCCCcccccC----CCce
Confidence            345666789999999999999999999862111          11          1111100 010011111    1257


Q ss_pred             ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621          82 AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI  161 (253)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      .|.++|++|.++..|+..++.-+..+....--+.-.+++.|=...                                   
T Consensus        65 IDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~~-----------------------------------  109 (176)
T PF11111_consen   65 IDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGRE-----------------------------------  109 (176)
T ss_pred             eEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCcc-----------------------------------
Confidence            899999999999999999988777764443234444444332221                                   


Q ss_pred             HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                                  ....     +..++..+++..+.+|++.+.-.+..+...+=+.|.+++.
T Consensus       110 ------------~~~s-----v~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL~~lq  153 (176)
T PF11111_consen  110 ------------SHCS-----VHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLLRMLQ  153 (176)
T ss_pred             ------------cccc-----cCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHHHHHH
Confidence                        1122     6778899999999999999999999888888777777664

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=96.97  E-value=0.013  Score=49.10  Aligned_cols=110  Identities=13%  Similarity=0.110  Sum_probs=59.0

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCCC-----------c-cc----------CccceeeEEEEEeeC-------------Ce
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDDAFNT-----------T-FI----------STIGIDFKIKTVDLK-------------GK   56 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~~~~~-----------~-~~----------~~~~~~~~~~~~~~~-------------~~   56 (253)
                      .++-|-=|||||||++.++......           . .+          ....+.-.+..++++             ..
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~   83 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD   83 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence            4677899999999999998543210           0 00          011111112222211             11


Q ss_pred             EEEEEEEeCCCcccccccchhhh--------cCccEEEEEEeCCChhhHHH-HH-HHHHHHHHhcccccceeEEeeeecc
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYY--------RGAMGIMLVYDITNEKSFDN-IL-KWLRNIDEHANEDVEKMILGKTKDT  126 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~s~~~-~~-~~~~~i~~~~~~~~p~iiv~nK~D~  126 (253)
                      .....++.|.|-..-......+.        -..|++|-|+|+.+-..... .. ....++      ...=+|++||.|+
T Consensus        84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi------a~AD~ivlNK~Dl  157 (323)
T COG0523          84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL------AFADVIVLNKTDL  157 (323)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH------HhCcEEEEecccC
Confidence            24567888988754423222222        23577888999875433221 11 122222      3456789999999


Q ss_pred             c
Q psy9621         127 A  127 (253)
Q Consensus       127 ~  127 (253)
                      .
T Consensus       158 v  158 (323)
T COG0523         158 V  158 (323)
T ss_pred             C
Confidence            7

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.95  E-value=0.00077  Score=42.97  Aligned_cols=21  Identities=29%  Similarity=0.594  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~   32 (253)
                      |++.|++|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998864

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.95  E-value=0.00061  Score=53.73  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -|+++|++|||||||++-+-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            378999999999999997764

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.92  E-value=0.003  Score=45.72  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -|++.|+.|+|||||++.+...
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.91  E-value=0.00081  Score=48.48  Aligned_cols=25  Identities=24%  Similarity=0.357  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAF   34 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~   34 (253)
                      -+++++|++|+||||++..+.....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC
Confidence            3789999999999999999986433

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.90  E-value=0.00074  Score=53.62  Aligned_cols=20  Identities=30%  Similarity=0.572  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      |+++|++|+|||||++-+.+
T Consensus        32 vsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999987764

>KOG0083|consensus

Probab=96.90  E-value=0.00075  Score=47.96  Aligned_cols=51  Identities=53%  Similarity=0.879  Sum_probs=47.3

Q ss_pred             eeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcC
Q psy9621         123 TKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN  173 (253)
Q Consensus       123 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (253)
                      --|.++|+..+.+..+||+.+...++.|++++..+|+++..|+.+|.++..
T Consensus        51 iwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k  101 (192)
T KOG0083|consen   51 IWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAK  101 (192)
T ss_pred             EeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHH
Confidence            358999999999999999999999999999999999999999999988764

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.90  E-value=0.00087  Score=48.77  Aligned_cols=22  Identities=23%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++|+|+.|+|||||++.+.+.
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEEccCCCccccceeeeccc
Confidence            6899999999999999988763

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK03839 putative kinase; Provisional

Probab=96.88  E-value=0.00079  Score=51.59  Aligned_cols=21  Identities=33%  Similarity=0.510  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +|+|+|+|||||||+..++..
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~   22 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAE   22 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998875

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=96.87  E-value=0.013  Score=44.52  Aligned_cols=64  Identities=8%  Similarity=-0.119  Sum_probs=43.6

Q ss_pred             EEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          59 KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        59 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .+.++|+|+....  .....+..+|.+|++++.+ ..++..+..+++.+...  ......++.|+.+..
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~  127 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEAL--GIKVVGVIVNRVRPD  127 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc--CCceEEEEEeCCccc
Confidence            6899999986432  2445678999999998865 44566666666665542  233567888998754

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PRK06217 hypothetical protein; Validated

Probab=96.86  E-value=0.00094  Score=51.36  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .||+|+|.+|||||||..+|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998853

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.82  E-value=0.00098  Score=47.91  Aligned_cols=21  Identities=33%  Similarity=0.498  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~   32 (253)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999998863

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.81  E-value=0.00094  Score=53.77  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++|+.|||||||++++.+
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            378999999999999999875

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.79  E-value=0.0011  Score=51.08  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++|+|++|+|||||++.+...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999998653

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.78  E-value=0.0011  Score=47.53  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~   32 (253)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998764

...

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.78  E-value=0.0011  Score=48.47  Aligned_cols=21  Identities=43%  Similarity=0.765  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~   32 (253)
                      |+++|++|+|||||++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999863

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>KOG0078|consensus

Probab=96.78  E-value=0.00082  Score=51.72  Aligned_cols=54  Identities=76%  Similarity=1.231  Sum_probs=50.0

Q ss_pred             eeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCC
Q psy9621         122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED  175 (253)
Q Consensus       122 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (253)
                      ---|.++|+...++...|++.+++++++|+++++.+|+++..|+..+.++..+.
T Consensus        64 QiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~  117 (207)
T KOG0078|consen   64 QIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDD  117 (207)
T ss_pred             EEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCC
Confidence            345999999999999999999999999999999999999999999999998653

>PRK14530 adenylate kinase; Provisional

Probab=96.78  E-value=0.0011  Score=52.43  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3899999999999999998864

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.74  E-value=0.008  Score=45.96  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl   48 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQ   48 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            6899999999999999988764

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14532 adenylate kinase; Provisional

Probab=96.73  E-value=0.0012  Score=50.96  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ++|+++|+|||||||+..++..
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998874

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.73  E-value=0.0013  Score=45.63  Aligned_cols=21  Identities=38%  Similarity=0.678  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~   30 (253)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            358999999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK00625 shikimate kinase; Provisional

Probab=96.73  E-value=0.0013  Score=50.18  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ++|+++|.+||||||+...+..
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998864

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.72  E-value=0.0014  Score=47.92  Aligned_cols=21  Identities=33%  Similarity=0.597  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .|+++|++|+|||+|++.+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998875

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.70  E-value=0.0015  Score=49.94  Aligned_cols=21  Identities=24%  Similarity=0.298  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~   30 (253)
                      -.++|+|+.|+|||||++.++
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            378999999999999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.69  E-value=0.004  Score=47.29  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++++|++|+|||||+|-+-+
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHh
Confidence            689999999999999998765

>PRK13949 shikimate kinase; Provisional

Probab=96.66  E-value=0.0016  Score=49.50  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +|+|+|++|+|||||...+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999987764

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.66  E-value=0.0014  Score=50.12  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++|+|++|||||||++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999998754

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>KOG3347|consensus

Probab=96.65  E-value=0.0013  Score=47.96  Aligned_cols=27  Identities=22%  Similarity=0.342  Sum_probs=23.6

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +.....||+|-|-||+|||||..++..
T Consensus         3 ~~r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    3 PERERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hhhcCCCEEEeCCCCCCchhHHHHHHH
Confidence            346678999999999999999999874

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.64  E-value=0.0015  Score=50.31  Aligned_cols=22  Identities=18%  Similarity=0.376  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      --|+|+|++||||||+++++..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK10646 ADP-binding protein; Provisional

Probab=96.64  E-value=0.0099  Score=44.07  Aligned_cols=22  Identities=36%  Similarity=0.477  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -|++-|+-|+|||||++.+...
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~   51 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQA   51 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999998753

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.63  E-value=0.0041  Score=44.37  Aligned_cols=22  Identities=36%  Similarity=0.471  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      --|++-|+-|+|||||++.+..
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~   37 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLAR   37 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999874

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=96.63  E-value=0.32  Score=40.36  Aligned_cols=67  Identities=10%  Similarity=0.104  Sum_probs=40.2

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhc-cccccee-EEeeeec
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKM-ILGKTKD  125 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~i-iv~nK~D  125 (253)
                      .+.+.++||+|.-.... ....+..+|.+|++.+. ++.++..+...++.+.... ..+++.. ++.|+.+
T Consensus       115 ~yD~IiIDt~~~l~~~a-~~aal~~AD~viIp~~p-~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~  183 (290)
T CHL00072        115 EYDIILFDVLGDVVCGG-FAAPLNYADYCIIITDN-GFDALFAANRIAASVREKARTHPLRLAGLVGNRTS  183 (290)
T ss_pred             cCCEEEEecCCcceech-hhhhhhcCCEEEEEecC-CHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence            35688999987522111 12345679999998875 4666666665555544432 2344443 7778876

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.62  E-value=0.0017  Score=47.62  Aligned_cols=22  Identities=18%  Similarity=0.453  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .|+|+|+.|+|||||+..+.+.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998753

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.62  E-value=0.0016  Score=49.77  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -|+|+|++|||||||++.+...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4899999999999999999863

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.62  E-value=0.0012  Score=50.15  Aligned_cols=24  Identities=33%  Similarity=0.588  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDA   33 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~   33 (253)
                      .=+++.||+|||||||+++|+...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            457899999999999999999754

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.60  E-value=0.0017  Score=51.84  Aligned_cols=24  Identities=33%  Similarity=0.569  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .+|++|+|++|||||+|+-.++..
T Consensus        13 ~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   13 PFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            469999999999999999888753

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK02496 adk adenylate kinase; Provisional

Probab=96.60  E-value=0.0019  Score=49.66  Aligned_cols=22  Identities=23%  Similarity=0.524  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .|++|+|+||+||||+...+..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.60  E-value=0.002  Score=49.74  Aligned_cols=22  Identities=14%  Similarity=0.371  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      =|+|+|++|||||||+++|...
T Consensus         6 ~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          6 LFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4899999999999999999864

>PRK14531 adenylate kinase; Provisional

Probab=96.58  E-value=0.0019  Score=49.63  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..+|+++|+|||||||+..++..
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999998864

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.58  E-value=0.0017  Score=50.47  Aligned_cols=19  Identities=42%  Similarity=0.602  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHhh
Q psy9621          12 LLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~   30 (253)
                      .+++||+|+|||||++.|-
T Consensus        36 TAlIGPSGcGKST~LR~lN   54 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            5899999999999997764

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.58  E-value=0.0073  Score=47.09  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~   32 (253)
                      |+|.|++|+||||+++.+...
T Consensus         4 ilI~GptGSGKTTll~~ll~~   24 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDY   24 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988754

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.57  E-value=0.0018  Score=51.57  Aligned_cols=22  Identities=36%  Similarity=0.561  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +||+|+|+|||||||+...+..
T Consensus         7 mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          7 LKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998864

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.57  E-value=0.002  Score=49.74  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -.++++|++|+|||||++.+.+.
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            47999999999999999998863

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK01889 GTPase RsgA; Reviewed

Probab=96.56  E-value=0.0025  Score=54.37  Aligned_cols=23  Identities=30%  Similarity=0.536  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -+++++|.+|+|||||++.+.+.
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~  218 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGE  218 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHh
Confidence            37999999999999999999864

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.54  E-value=0.015  Score=48.37  Aligned_cols=23  Identities=35%  Similarity=0.642  Sum_probs=19.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhh
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~   30 (253)
                      ...-|+|+|-.|+||||=+-++.
T Consensus       138 ~p~Vil~vGVNG~GKTTTIaKLA  160 (340)
T COG0552         138 KPFVILFVGVNGVGKTTTIAKLA  160 (340)
T ss_pred             CcEEEEEEecCCCchHhHHHHHH
Confidence            46789999999999999887764

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.53  E-value=0.0019  Score=50.90  Aligned_cols=21  Identities=33%  Similarity=0.588  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -|+++|++|+|||||++.+-+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            489999999999999987765

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.53  E-value=0.0055  Score=51.52  Aligned_cols=57  Identities=12%  Similarity=0.166  Sum_probs=40.4

Q ss_pred             CCCc-ccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          65 TAGQ-ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        65 t~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .+|+ ..+.......+...|+++-|+|+-+|.+...     ..+.+.. .+.|.++|+||.|+.
T Consensus        17 ~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v-~~k~~i~vlNK~DL~   74 (322)
T COG1161          17 FPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIV-KEKPKLLVLNKADLA   74 (322)
T ss_pred             CCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHH-ccCCcEEEEehhhcC
Confidence            3665 3456667778899999999999988865333     2222222 456669999999997

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.53  E-value=0.0064  Score=45.41  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+.
T Consensus        27 ~~~i~G~nGsGKStll~~l~g~   48 (157)
T cd00267          27 IVALVGPNGSGKSTLLRAIAGL   48 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999988764

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.50  E-value=0.0023  Score=50.59  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            5899999999999999988864

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.50  E-value=0.0019  Score=49.98  Aligned_cols=21  Identities=33%  Similarity=0.605  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +|+|+|+|||||||+...|..
T Consensus         1 ~I~i~G~pGsGKst~a~~La~   21 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAK   21 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998875

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>KOG0094|consensus

Probab=96.50  E-value=0.0033  Score=47.95  Aligned_cols=52  Identities=42%  Similarity=0.763  Sum_probs=48.1

Q ss_pred             eccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCC
Q psy9621         124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED  175 (253)
Q Consensus       124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (253)
                      -|.+||+..+.+...|++.+.+++++||+++..+|++..+|++.........
T Consensus        76 WDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~  127 (221)
T KOG0094|consen   76 WDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD  127 (221)
T ss_pred             EecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCC
Confidence            4999999999999999999999999999999999999999999888876543

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.46  E-value=0.0022  Score=49.98  Aligned_cols=21  Identities=33%  Similarity=0.449  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~   32 (253)
                      |.|.|++|||||||.+.+...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998753

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	253
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		4e-65
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		4e-63
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-48
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		3e-47
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		6e-47
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		1e-46
4fmc_B	171	Espg-Rab1 Complex Length = 171		1e-46
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-46
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-46
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-46
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-46
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-46
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		4e-46
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		6e-46
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		6e-46
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		4e-45
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		4e-45
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		5e-45
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		5e-44
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-25
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-43
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		2e-42
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		3e-42
4fmc_F	117	Espg-Rab1 Complex Length = 117		5e-41
4fmc_F	117	Espg-Rab1 Complex Length = 117		8e-15
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		8e-40
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		3e-16
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-39
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		4e-39
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		4e-38
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-37
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-37
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-37
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		4e-37
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		7e-35
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		6e-16
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		8e-35
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		4e-13
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		9e-35
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		1e-34
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-34
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		3e-34
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		6e-34
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		3e-33
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		4e-33
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-32
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-13
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-32
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-32
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		3e-31
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-30
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		4e-30
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		7e-30
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		1e-13
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		8e-30
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-13
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		1e-29
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		4e-14
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		3e-29
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		3e-29
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		4e-29
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		7e-29
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-12
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		9e-29
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-12
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		1e-28
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		1e-12
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-28
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-28
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		7e-27
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		9e-27
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		9e-27
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		1e-26
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		3e-26
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		3e-26
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		5e-26
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		5e-26
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-12
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		1e-25
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		1e-25
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		8e-25
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		3e-08
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-24
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		8e-09
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		3e-24
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		4e-12
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		6e-24
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		3e-12
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		9e-24
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		2e-13
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		9e-24
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		2e-13
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-23
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		9e-12
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-23
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-13
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-23
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		4e-11
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-23
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-13
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-23
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-13
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-23
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-13
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-23
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-13
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		3e-23
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-12
2efc_B	181	Ara7-GdpATVPS9A Length = 181		4e-23
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		7e-23
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		5e-13
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		8e-23
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-12
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-22
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-12
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-22
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		4e-11
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-22
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		4e-11
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-22
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		8e-22
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-12
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		8e-22
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-11
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		2e-20
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-20
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		3e-20
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		4e-20
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		4e-20
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		2e-19
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		2e-19
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-18
1vg1_A	185	Gdp-bound Rab7 Length = 185		5e-09
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-18
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		4e-18
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		6e-17
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		2e-11
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		8e-15
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		7e-05
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		9e-15
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		8e-05
1s1c_A	183	Crystal Structure Of The Complex Between The Human		3e-14
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		3e-14
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		3e-14
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		3e-14
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		3e-14
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		3e-14
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		3e-14
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		4e-14
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		4e-14
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		4e-14
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		4e-14
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		5e-14
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		8e-14
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		3e-07
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-13
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		2e-07
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-13
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		3e-07
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-13
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		2e-07
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		1e-13
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		3e-07
1byu_A	216	Canine Gdp-Ran Length = 216		1e-13
1byu_A	216	Canine Gdp-Ran Length = 216		3e-07
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-13
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		3e-05
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-13
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-13
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-07
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-13
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		5e-07
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-13
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-13
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		3e-07
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-13
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		6e-07
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		3e-13
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-06
3icq_B	171	Karyopherin Nuclear State Length = 171		3e-13
3icq_B	171	Karyopherin Nuclear State Length = 171		1e-06
2bku_A	177	Kap95p:rangtp Complex Length = 177		3e-13
2bku_A	177	Kap95p:rangtp Complex Length = 177		3e-07
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		3e-13
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		3e-05
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		3e-13
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		3e-13
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		4e-13
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		4e-13
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		4e-13
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		4e-13
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		5e-13
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		9e-13
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		3e-07
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		9e-13
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		2e-06
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-12
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		3e-06
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-12
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-06
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-12
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		3e-12
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		6e-12
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		1e-09
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		8e-12
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-11
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-11
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-11
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-11
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-11
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-11
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-11
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		2e-11
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-11
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-11
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-11
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		2e-11
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		2e-11
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-11
1mh1_A	186	Small G-Protein Length = 186		2e-11
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		2e-11
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		3e-11
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		3e-11
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		3e-11
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		3e-11
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		3e-11
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		3e-11
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		3e-11
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-11
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		3e-11
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		4e-11
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		4e-11
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		4e-11
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		7e-11
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		9e-11
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		1e-10
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-10
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-10
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-10
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-10
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-10
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-10
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-10
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-10
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-10
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		2e-10
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-10
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-10
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		2e-10
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		2e-10
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		2e-10
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		2e-10
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		2e-10
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		3e-10
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		3e-10
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		3e-10
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-10
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		3e-10
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		3e-10
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		3e-10
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		3e-10
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		3e-10
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		3e-10
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-10
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		3e-10
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		3e-10
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		4e-10
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		5e-10
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		5e-10
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		5e-10
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		7e-10
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		7e-10
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		8e-10
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		9e-10
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		9e-10
2kb0_A	178	Cdc42(T35a) Length = 178		1e-09
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-09
4q21_A	189	Molecular Switch For Signal Transduction: Structura		1e-09
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-09
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		2e-09
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		2e-09
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		2e-09
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		2e-09
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		2e-09
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-09
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-09
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		2e-09
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		2e-09
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-09
1wq1_R	166	Ras-Rasgap Complex Length = 166		2e-09
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-09
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		2e-09
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		2e-09
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		2e-09
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		3e-09
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		3e-09
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		3e-09
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-09
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		4e-09
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		7e-09
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		7e-09
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		7e-09
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-09
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		8e-09
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		8e-09
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		8e-09
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		9e-09
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		1e-08
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-08
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		2e-08
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-08
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-08
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		2e-08
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-08
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		2e-08
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-08
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		3e-08
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		3e-08
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		3e-08
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-08
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-08
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		3e-08
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		3e-08
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		4e-08
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		7e-08
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		7e-08
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		1e-07
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		1e-07
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		1e-07
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-07
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		1e-07
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-07
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		2e-07
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-07
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		2e-07
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-07
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-07
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		3e-04
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		2e-07
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-07
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-07
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		4e-07
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		6e-07
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		6e-07
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		8e-07
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		1e-06
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		1e-06
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		1e-06
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		3e-06
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		3e-06
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		6e-06
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		7e-06
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		7e-06
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		7e-06
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		8e-06
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		9e-06
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		9e-06
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		1e-05
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		1e-05
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		1e-05
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		1e-05
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		1e-05
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		2e-05
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		2e-05
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		2e-05
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		2e-05
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		3e-05
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		4e-05
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		7e-05
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		9e-05
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		1e-04
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		2e-04
3dpu_A	535	Roccor Domain Tandem Of Rab Family Protein (Roco) L		3e-04
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		3e-04

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  244 bits (622), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 131/221 (59%), Positives = 148/221 (66%), Gaps = 51/221 (23%)
Query: 4   KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
           KTYD+LFKLLLIGDSGVGKTCVLFRFS+DAFN+TFISTIGIDFKI+T++L GK+IKLQIW
Sbjct: 3   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
Query: 64  DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
           DTAGQERF TITT+YYRGAMGIMLVYDITNEKSFDNI  W+RNI+EHA+ DVEKMILG  
Sbjct: 63  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122
Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
            D                                               N+  Q     V
Sbjct: 123 CDV----------------------------------------------NDKRQ-----V 131
Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
            K RGE +A +YG++FMETSAKANIN+E AF  LA  I  K
Sbjct: 132 SKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  237 bits (605), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 128/218 (58%), Positives = 145/218 (66%), Gaps = 51/218 (23%)
Query: 7   DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66
           D+LFKLLLIGDSGVGKTCVLFRFS+DAFN+TFISTIGIDFKI+T++L GK+IKLQIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 67  GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT 126
           GQERF TITT+YYRGAMGIMLVYDITNEKSFDNI  W+RNI+EHA+ DVEKMILG   D 
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD- 122
Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
                                                         N+  Q     V K 
Sbjct: 123 ---------------------------------------------VNDKRQ-----VSKE 132
Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
           RGE +A +YG++FMETSAKANIN+E AF  LA  I  K
Sbjct: 133 RGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  189 bits (480), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 137/221 (61%), Gaps = 52/221 (23%)
Query: 4   KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
           K+YD + K+LLIGDSGVGK+C+L RF +D FN +FI+TIGIDFKIKTVD+ GKK+KLQ+W
Sbjct: 15  KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 74
Query: 64  DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
           DTAGQERF TITT+YYRGAMGI+LVYD+T+E++F NI +W + ++EHAN++ + +++G  
Sbjct: 75  DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNK 134
Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
            D                                                 + +VV +  
Sbjct: 135 SDM------------------------------------------------ETRVVTA-- 144
Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
              +GEA+A+E G+ F+E+SAK + N+ + F  LA  I +K
Sbjct: 145 --DQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  185 bits (469), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 97/218 (44%), Positives = 134/218 (61%), Gaps = 52/218 (23%)
Query: 7   DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66
           D + K+LLIGDSGVGK+C+L RF +D FN +FI+TIGIDFKIKTVD+ GKK+KLQIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 67  GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT 126
           GQERF TITT+YYRGAMGI+LVYDIT+E++F NI +W + ++EHAN++ + +++G   D 
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
                                                           + +VV +     
Sbjct: 121 ------------------------------------------------ETRVVTA----D 128
Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
           +GEA+A+E G+ F+E+SAK + N+ + F  LA  I +K
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  184 bits (466), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 133/216 (61%), Gaps = 51/216 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFKLLLIGDSGVGK+C+L RF+DD +  ++ISTIG+DFKI+T++L GK IKLQIWDT
Sbjct: 13  YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G   D
Sbjct: 73  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
              ++                  V D T  K F + L                       
Sbjct: 133 LTTKK------------------VVDYTTAKEFADSL----------------------- 151
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                     G+ F+ETSAK   N+E++F+ +A  I
Sbjct: 152 ----------GIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  182 bits (463), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 132/216 (61%), Gaps = 51/216 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFKLLLIGDSGVGK+C+L RF+DD +  ++ISTIG+DFKI+T++L GK IKLQIWDT
Sbjct: 22  YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 81
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G   D
Sbjct: 82  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 141
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
              ++                  V D T  K F                           
Sbjct: 142 LTTKK------------------VVDYTTAKEF--------------------------- 156
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                 A   G+ F+ETSAK   N+E++F+ +A  I
Sbjct: 157 ------ADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  182 bits (463), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 132/216 (61%), Gaps = 51/216 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFKLLLIGDSGVGK+C+L RF+DD +  ++ISTIG+DFKI+T++L GK IKLQIWDT
Sbjct: 3   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G   D
Sbjct: 63  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
              ++                  V D T  K F                           
Sbjct: 123 LTTKK------------------VVDYTTAKEF--------------------------- 137
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                 A   G+ F+ETSAK   N+E++F+ +A  I
Sbjct: 138 ------ADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  182 bits (463), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 94/216 (43%), Positives = 131/216 (60%), Gaps = 51/216 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFKLLLIGDSGVGK+C+L RF+DD +  ++ISTIG+DFKI+T++L GK IKLQIWDT
Sbjct: 6   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQERF TIT+SYYRGA GI++VYD+T+++S+ N+ +WL+ ID +A+E+V K+++G    
Sbjct: 66  AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS- 124
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                    D+T +K  DN                         
Sbjct: 125 -------------------------DLTTKKVVDNT------------------------ 135
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
              +  A   G+ F+ETSAK   N+E+AF+ +A  I
Sbjct: 136 -TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  182 bits (463), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 94/216 (43%), Positives = 131/216 (60%), Gaps = 51/216 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFKLLLIGDSGVGK+C+L RF+DD +  ++ISTIG+DFKI+T++L GK IKLQIWDT
Sbjct: 6   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQERF TIT+SYYRGA GI++VYD+T+++S+ N+ +WL+ ID +A+E+V K+++G    
Sbjct: 66  AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS- 124
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                    D+T +K  DN                         
Sbjct: 125 -------------------------DLTTKKVVDNT------------------------ 135
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
              +  A   G+ F+ETSAK   N+E+AF+ +A  I
Sbjct: 136 -TAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  182 bits (463), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 131/216 (60%), Gaps = 51/216 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFKLLLIGDSGVGK C+L RF+DD +  ++ISTIG+DFKI+T++L GK IKLQIWDT
Sbjct: 13  YDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G   D
Sbjct: 73  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
              ++                  V D T  K F                           
Sbjct: 133 LTTKK------------------VVDYTTAKEF--------------------------- 147
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                 A   G+ F+ETSAK   N+E++F+ +A  I
Sbjct: 148 ------ADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 132/216 (61%), Gaps = 51/216 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFKLLLIGDSGVGK+C+L RF+DD +  ++ISTIG+DFKI+T++L GK IKLQIWDT
Sbjct: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G   D
Sbjct: 65  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCD 124
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
              ++                  V D T  K F                           
Sbjct: 125 LTTKK------------------VVDYTTAKEF--------------------------- 139
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                 A   G+ F+ETSAK   N+E++F+ +A  I
Sbjct: 140 ------ADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/218 (44%), Positives = 133/218 (61%), Gaps = 52/218 (23%)
Query: 7   DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66
           D + K+LLIGDSGVGK+C+L RF +D FN +FI+TIGIDFKIKTVD+ GKK+KLQIWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 67  GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT 126
           GQERF TITT+YYRGA GI+LVYDIT+E++F NI +W + ++EHAN++ + +++G   D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
                                                           + +VV +     
Sbjct: 121 ------------------------------------------------ETRVVTA----D 128
Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
           +GEA+A+E G+ F+E+SAK + N+ + F  LA  I +K
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  181 bits (458), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 131/216 (60%), Gaps = 51/216 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD LFKLLLIGDSGVGK+C+L RF+DD +  ++ISTIG+DFKI+T++L GK IKLQIWDT
Sbjct: 3   YDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G   D
Sbjct: 63  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
              ++                  V D T  K F                           
Sbjct: 123 LTTKK------------------VVDYTTAKEF--------------------------- 137
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                 A   G+ F+ETSAK   N+E++F+ +A  I
Sbjct: 138 ------ADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  180 bits (457), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 131/216 (60%), Gaps = 51/216 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFKLLLIGDSGVGK+C+L RF+DD +  ++ISTIG+DFKI+T++L GK IKLQIWDT
Sbjct: 30  YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 89
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G   D
Sbjct: 90  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 149
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
              ++                  V D T  K F + L                       
Sbjct: 150 LTTKK------------------VVDYTTAKEFADSL----------------------- 168
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                     G+ F+ETSAK   N+E++F   A  I
Sbjct: 169 ----------GIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  180 bits (457), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 94/218 (43%), Positives = 133/218 (61%), Gaps = 52/218 (23%)
Query: 7   DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66
           D + K+LLIGDSGVGK+C+L RF +D FN +FI+TIGIDFKIKTVD+ GKK+KLQ+WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 67  GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT 126
           GQERF TITT+YYRGA GI+LVYD+T+E++F NI +W + ++EHAN++ + +++G   D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
                                                           + +VV +     
Sbjct: 121 ------------------------------------------------ETRVVTA----D 128
Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
           +GEA+A+E G+ F+E+SAK + N+ + F  LA  I +K
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 93/216 (43%), Positives = 129/216 (59%), Gaps = 51/216 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFKLLLIGDSGVGK+C+L RF+DD +  ++ISTIG+DFKI+T+ L+ K +KLQIWDT
Sbjct: 6   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDT 65
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQERF TIT+SYYRGA GI++VYD+T+  SFDN+ +W++ ID +A E+V K+++G   D
Sbjct: 66  AGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCD 125
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
              +                                               +VV S    
Sbjct: 126 LVSK-----------------------------------------------RVVTS---- 134
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
             G  +A  +G++F+ETSAK   N+E+AF  +A  I
Sbjct: 135 DEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 103/257 (40%), Positives = 143/257 (55%), Gaps = 65/257 (25%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFKLLLIG+SGVGK+C+L RFSDD +   +ISTIG+DFKIKTV+L GK +KLQIWDT
Sbjct: 5   YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQERF TIT+SYYRG+ GI++VYD+T+++SF+ +  WL+ ID +A   V K+++G   D
Sbjct: 65  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
              +                 ++ YD+  E +              AN+ P         
Sbjct: 125 LKDKR----------------VVEYDVAKEFA-------------DANKMP--------- 146
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDR 245
                        F+ETSA  + N+E AF+ +A  I +  S ++  E     T  KK D+
Sbjct: 147 -------------FLETSALDSTNVEDAFLTMARQIKESMSQQNLNE-----TTQKKEDK 188
Query: 246 GGM---------AGGCC 253
           G +          GGCC
Sbjct: 189 GNVNLKGQSLTNTGGCC 205

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  177 bits (449), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 103/258 (39%), Positives = 143/258 (55%), Gaps = 66/258 (25%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFKLLLIG+SGVGK+C+L RFSDD +   +ISTIG+DFKIKTV+L GK +KLQIWDT
Sbjct: 5   YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQERF TIT+SYYRG+ GI++VYD+T+++SF+ +  WL+ ID +A   V K+++G   D
Sbjct: 65  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
              +                 ++ YD+  E +              AN+ P         
Sbjct: 125 LKDKR----------------VVEYDVAKEFA-------------DANKMP--------- 146
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDR 245
                        F+ETSA  + N+E AF+ +A  I +  S ++  E     T  KK D+
Sbjct: 147 -------------FLETSALDSTNVEDAFLTMARQIKESMSQQNLNE-----TTQKKEDK 188
Query: 246 GGM----------AGGCC 253
           G +           GGCC
Sbjct: 189 GNVNLKGQSLTNTGGGCC 206

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  174 bits (440), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 101/117 (86%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           + K+LLIGDSGVGK+C+L RF +D FN +FI+TIGIDFKIKTVD+ GKK+KLQ+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           ERF TITT+YYRGAMGI+LVYD+T+E++F NI +W + ++EHAN++ + +++G   D
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 123

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 77/109 (70%), Gaps = 9/109 (8%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQERF TITT+YYRGAMGI+LVYD+T+E++F NI +W + ++EHAN++ Q++     
Sbjct: 62  DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNK 121
Query: 180 ----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
                  V   +GEA+A+E G+ F+E+SAK + N+ + F  LA  I +K
Sbjct: 122 SDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 170

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/211 (43%), Positives = 127/211 (60%), Gaps = 51/211 (24%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KLLLIGDSGVGK+C+L RF+DD +  ++ISTIG+DFKI+T++L GK IKLQIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
           F TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G   D   ++
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
                             V D T  K F                                
Sbjct: 121 ------------------VVDYTTAKEF-------------------------------- 130
Query: 191 IAREYGVRFMETSAKANINIEKAFIELATAI 221
            A   G+ F+ETSAK   N+E++F+ +A  I
Sbjct: 131 -ADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/230 (41%), Positives = 127/230 (55%), Gaps = 57/230 (24%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAF-NTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
           YD  FK++L+GDSGVGKTC+L RF D AF   TFIST+GIDF+ K +D+ G K+KLQ+WD
Sbjct: 7   YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 65  TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK 124
           TAGQERF ++T +YYR A  ++L+YD+TN+ SFDNI  WL  I E+A  DV  M+LG   
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
           D+A  ER                                                   V 
Sbjct: 127 DSA-HERV--------------------------------------------------VK 135
Query: 185 KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAP 234
           +  GE +A+EYG+ FMETSAK  +N++ AF  +A     K   R  ++AP
Sbjct: 136 REDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA-----KELKRRSMKAP 180

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  168 bits (425), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 92/216 (42%), Positives = 127/216 (58%), Gaps = 51/216 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFKLLLIG+SGVGK+C+L RFSDD +   +ISTIG+DFKIKTV+L GK +KLQIWDT
Sbjct: 18  YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 77
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQERF TIT+SYYRG+ GI++VYD+T+++SF+ +  WL+ ID +A   V K+++G   D
Sbjct: 78  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 137
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
              +                 ++ YD+  E +              AN+ P         
Sbjct: 138 LKDKR----------------VVEYDVAKEFA-------------DANKMP--------- 159
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                        F+ETSA  + N+E AF+ +A  I
Sbjct: 160 -------------FLETSALDSTNVEDAFLTMARQI 182

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  164 bits (414), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 72/114 (63%), Positives = 99/114 (86%)
Query: 12  LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71
           LLLIGDSGVGK+C+L RF+DD +  ++ISTIG+DFKI+T++L GK IKLQIWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 72  HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
            TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G   D
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 114

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 46/51 (90%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED 175
           DTAGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+
Sbjct: 53  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN 103

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  160 bits (404), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 73/145 (50%), Positives = 110/145 (75%), Gaps = 1/145 (0%)
Query: 4   KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
           + YD LFKLL+IGDSGVGK+ +L RF+D+ F+ ++I+TIG+DFKI+TV++ G+K+KLQIW
Sbjct: 4   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63
Query: 64  DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
           DTAGQERF TIT++YYRG  G+++VYD+T+ +SF N+ +WL  I+++  +DV ++++G  
Sbjct: 64  DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNK 122
Query: 124 KDTAGQERFHTITTSYYRGAMGIML 148
            D   ++   T     + G MGI L
Sbjct: 123 NDDPERKVVETEDAYKFAGQMGIQL 147

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 13/101 (12%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA-----------N 173
           DTAGQERF TIT++YYRG  G+++VYD+T+ +SF N+ +WL  I+++            N
Sbjct: 64  DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKN 123
Query: 174 EDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAF 214
           +DP+     V        A + G++  ETSAK N+N+E+ F
Sbjct: 124 DDPE--RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/221 (39%), Positives = 124/221 (56%), Gaps = 51/221 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           +D++FKLL+IG+S VGKT  LFR++DD F   F+ST+GIDFK+KTV    K++KLQIWDT
Sbjct: 20  FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQER+ TITT+YYRGAMG +L+YDITNE+SF+ +  W   I  ++ ++ + +++G   D
Sbjct: 80  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 139
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                                           E+ +VV +    
Sbjct: 140 M-----------------------------------------------EEERVVPT---- 148
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
            +G+ +A + G  F E SAK NI++ +AF  L  AI DK S
Sbjct: 149 EKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  157 bits (398), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/219 (39%), Positives = 122/219 (55%), Gaps = 51/219 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           +D++FK+L+IG+S VGKT  LFR++DD+F   F+ST+GIDFK+KT+    K+IKLQIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQER+ TITT+YYRGAMG +L+YDITNE+SF+ +  W   I  ++ ++ + +++G   D
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                                           ED +VV+S    
Sbjct: 122 M-----------------------------------------------EDERVVSS---- 130
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
            RG  +A   G  F E SAK NIN+++ F  L   I +K
Sbjct: 131 ERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 116/219 (52%), Gaps = 51/219 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           Y +LFK ++IGD+GVGK+C+L +F+D  F      TIG++F  + + + GK+IKLQIWDT
Sbjct: 7   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQE F +IT SYYRGA G +LVYDIT   +F+++  WL +  +H+N ++  M++G   D
Sbjct: 67  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
              +                                                     V K
Sbjct: 127 LESRRE---------------------------------------------------VKK 135
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
             GEA ARE+G+ FMETSAK   N+E+AFI  A  IY+K
Sbjct: 136 EEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 52/224 (23%)
Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
           + +  DF  ++++IG  GVGKT ++ RF+DD F     ST+G+DFKIKTV+L+GKKI+LQ
Sbjct: 19  SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 78
Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           IWDTAGQERF++IT++YYR A GI+LVYDIT +++FD++ KW++ ID++A+ED E +++G
Sbjct: 79  IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138
Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
              D                         +IT ++                         
Sbjct: 139 NKLDCETDR--------------------EITRQQ------------------------- 153
Query: 182 WVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAIYDK 224
                 GE  A++  G+RF E SAK N N+++ F++L   I  K
Sbjct: 154 ------GEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 119/221 (53%), Gaps = 51/221 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           +D+ FK+L+IG+S VGKT  LFR++DD+F   F+ST+GIDFK+KT+    K+IKLQIWDT
Sbjct: 5   FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AG ER+ TITT+YYRGA G +L YDITNE+SF+ +  W   I  ++ ++ + +++G   D
Sbjct: 65  AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                                           ED +VV+S    
Sbjct: 125 X-----------------------------------------------EDERVVSS---- 133
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
            RG  +A   G  F E SAK NIN+++ F  L   I +K S
Sbjct: 134 ERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXS 174

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 120/224 (53%), Gaps = 51/224 (22%)
Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           +  +  D++FKLLLIG+S VGKT  LFR++DD+F   F+ST+GIDFK+KTV    K+IKL
Sbjct: 14  LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKL 73
Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQER+ TITT+YYRGAMG +L+YDI N++SF  +  W   I  ++ ++ + +++
Sbjct: 74  QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV 133
Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                                                ED +VV 
Sbjct: 134 GNKCDL-----------------------------------------------EDERVVP 146
Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
           +      G  +A + G  F E SAK NIN+++ F  L   I +K
Sbjct: 147 A----EDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEK 186

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 82/218 (37%), Positives = 118/218 (54%), Gaps = 51/218 (23%)
Query: 7   DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66
            +LFK ++IGD+GVGK+C+L +F+D  F      TIG++F  + V++ GK+IKLQIWDTA
Sbjct: 19  SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTA 78
Query: 67  GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT 126
           GQE F +IT SYYRGA G +LVYDIT  ++F+++  WL +  +H++ ++  M++G   D 
Sbjct: 79  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL 138
Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
             +                     D+  E+                              
Sbjct: 139 ESRR--------------------DVKREE------------------------------ 148
Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
            GEA ARE+G+ FMETSAK   N+E+AFI  A  IY K
Sbjct: 149 -GEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 185

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  143 bits (361), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 73/158 (46%), Positives = 104/158 (65%), Gaps = 2/158 (1%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YDFLFK++LIG++GVGKTC++ RF+   F     +TIG+DF IKTV++ G+K+KLQIWDT
Sbjct: 23  YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 82
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQERF +IT SYYR A  ++L YDIT E+SF  + +WLR I+++A+  V  +++G   D
Sbjct: 83  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 142
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK 163
            A +          +  A    + Y  T+ K  DN+ K
Sbjct: 143 LAERREVSQQRAEEFSEAQD--MYYLETSAKESDNVEK 178

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQERF +IT SYYR A  ++L YDIT E+SF  + +WLR I+++A+     V     
Sbjct: 81  DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 140
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                   V + R E  +    + ++ETSAK + N+EK F++LA  +
Sbjct: 141 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  143 bits (361), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 92/124 (74%)
Query: 4   KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
           + YDFLFKL+L+GD+ VGKTCV+ RF   AF+    STIG+DF +KT++++GK++KLQIW
Sbjct: 24  EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 83
Query: 64  DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
           DTAGQERF TIT SYYR A G +L YDIT   SF ++  W+ ++ ++A  ++ ++++G  
Sbjct: 84  DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNK 143
Query: 124 KDTA 127
            D +
Sbjct: 144 SDLS 147

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 13/118 (11%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA----------NE 174
           DTAGQERF TIT SYYR A G +L YDIT   SF ++  W+ ++ ++A          N+
Sbjct: 84  DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNK 143
Query: 175 DPQVVNSWVCKHRGEAIAREYGVR-FMETSAKANINIEKAFIELATAIYDKTSGRDPL 231
                   V     +++A  Y +   +ETSAK + N+E+AF+ +AT +  +  G  PL
Sbjct: 144 SDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG--PL 199

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  143 bits (361), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 124/238 (52%), Gaps = 54/238 (22%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFK++LIGDSGVGK+ +L RF+ + FN    STIG++F  +++ + GK IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQER+  IT++YYRGA+G +LVYDI    +++N+ +WL+ + +HA+ ++  M++G   D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                               L+ LR                V  
Sbjct: 122 ------------------------------------LRHLRA---------------VPT 130
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKP 243
               A A +  + F+ETSA  + N+E+AF  + T IY   S +   +  DR   D+ P
Sbjct: 131 DEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK---QIADRAAHDESP 185

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 128/265 (48%), Gaps = 68/265 (25%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD LFK++LIGDSGVGK+ +L RF+ + FN    STIG++F  +T++++GK+IK QIWDT
Sbjct: 10  YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDT 69
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQER+  IT++YYRGA+G ++VYDI+   S++N   WL  + E+A+++V   ++G   D
Sbjct: 70  AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSD 129
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                               L  LR                V  
Sbjct: 130 ------------------------------------LAHLR---------------AVPT 138
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS-------------GRDPLE 232
              +  A+E  + F ETSA  + N++KAF EL   IY K S               +   
Sbjct: 139 EESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGAS 198
Query: 233 APDRVTIDKKP----DRGGMAGGCC 253
           AP+  TI   P    ++      CC
Sbjct: 199 APNGPTISLTPTPNENKKANGNNCC 223

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 119/222 (53%), Gaps = 51/222 (22%)
Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           + + +YD+LFK++LIGDSGVGK+ +L RF+ + FN    STIG++F  +++ + GK IK 
Sbjct: 12  VPRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 71
Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQER+  IT++YYRGA+G +LVYDI    +++N+ +WL+ + +HA+ ++  M++
Sbjct: 72  QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 131
Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                                    L+ LR              
Sbjct: 132 GNKSD------------------------------------LRHLRA------------- 142
Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
             V      A A + G+ F+ETSA  + N+E AF  + T IY
Sbjct: 143 --VPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 182

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 116/217 (53%), Gaps = 51/217 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFK++LIGDSGVGK+ +L RF+ + FN    STIG++F  +++ + GK IK QIWDT
Sbjct: 26  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 85
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQER+  IT++YYRGA+G +LVYDI    +++N+ +WL+ + +HA+ ++  M++G   D
Sbjct: 86  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                               L+ LR                V  
Sbjct: 146 ------------------------------------LRHLRA---------------VPT 154
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
               A A + G+ F+ETSA  + N+E AF  + T IY
Sbjct: 155 DEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  140 bits (353), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 122/219 (55%), Gaps = 52/219 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKI-KLQIWD 64
           YD+LFK++LIGDSGVGK+ +L RF+ D FN    STIG++F  K++ LK  KI K QIWD
Sbjct: 4   YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 65  TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK 124
           TAGQER+  IT++YYRGA+G +LVYDIT + SF+NI KWL+ + ++A+ ++  +++G   
Sbjct: 64  TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
           D                                    LK LR I++  N+  Q       
Sbjct: 124 D------------------------------------LKHLRVIND--NDATQY------ 139
Query: 185 KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223
                  A++  + F+ETSA    N+E AF +L   IY+
Sbjct: 140 -------AKKEKLAFIETSALEATNVELAFHQLLNEIYN 171

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 115/217 (52%), Gaps = 51/217 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFK++LIGDSGVGK+ +L RF+ + FN    STIG++F  +++ + GK IK QIWDT
Sbjct: 26  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 85
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AG ER+  IT++YYRGA+G +LVYDI    +++N+ +WL+ + +HA+ ++  M++G   D
Sbjct: 86  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                               L+ LR                V  
Sbjct: 146 ------------------------------------LRHLRA---------------VPT 154
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
               A A + G+ F+ETSA  + N+E AF  + T IY
Sbjct: 155 DEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  137 bits (346), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 115/217 (52%), Gaps = 51/217 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFK++LIGDSGVGK+ +L RF+ + FN    STIG++F  +++ + GK IK QIWDT
Sbjct: 5   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 64
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AG ER+  IT++YYRGA+G +LVYDI    +++N+ +WL+ + +HA+ ++  M++G   D
Sbjct: 65  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 124
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                               L+ LR                V  
Sbjct: 125 ------------------------------------LRHLRA---------------VPT 133
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
               A A + G+ F+ETSA  + N+E AF  + T IY
Sbjct: 134 DEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 170

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 106/163 (65%), Gaps = 2/163 (1%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFK++LIGDSGVGK+ +L RF+ D FN    STIG++F  +T++++ KKIK QIWDT
Sbjct: 7   YDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDT 66
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AG ER+  IT++YYRGA+G ++VYDI+   S++N   WL  + E+A+++V   ++G   D
Sbjct: 67  AGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSD 126
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 168
            A      T     +  AM   +++  T+  + DN+ K  R +
Sbjct: 127 LAHLRAVPTDEAKNF--AMENQMLFTETSALNSDNVDKAFREL 167

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 10/120 (8%)
Query: 117 KMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDP 176
           K I  +  DTAG ER+  IT++YYRGA+G ++VYDI+   S++N   WL  + E+A+++ 
Sbjct: 57  KKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNV 116
Query: 177 QV---VNSWVCKH-------RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
            V    N     H         +  A E  + F ETSA  + N++KAF EL  AI+   S
Sbjct: 117 AVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVS 176

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 114/217 (52%), Gaps = 51/217 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFK++LIGDSGVGK+ +L RF+ + FN    STIG++F  +++ + GK IK QIWDT
Sbjct: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AG ER+  IT++YYRGA+G +LVYDI    +++N+ +WL+ + +HA+ ++   ++G   D
Sbjct: 68  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 127
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                               L+ LR                V  
Sbjct: 128 ------------------------------------LRHLRA---------------VPT 136
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
               A A + G+ F+ETSA  + N+E AF  + T IY
Sbjct: 137 DEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 114/217 (52%), Gaps = 51/217 (23%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFK++LIGDSGVGK+ +L RF+ + FN    STIG++F  +++ + GK IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AG ER+  IT++YYRGA+G +LVYDI    +++N+ +WL+ + +HA+ ++   ++G   D
Sbjct: 62  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 121
Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                               L+ LR                V  
Sbjct: 122 ------------------------------------LRHLRA---------------VPT 130
Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
               A A + G+ F+ETSA  + N+E AF  + T IY
Sbjct: 131 DEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 110/222 (49%), Gaps = 51/222 (22%)
Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
           A   Y ++FK ++IGD GVGK+C+L +F++  F      TIG++F  + +++ G+KIKLQ
Sbjct: 8   APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 67
Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           IWDTAGQERF  +T SYYRGA G ++VYDIT   +++++  WL +     N +   +++G
Sbjct: 68  IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127
Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
              D   Q                     D+T E++                        
Sbjct: 128 NKADLEAQR--------------------DVTYEEA------------------------ 143
Query: 182 WVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223
                  +  A E G+ F+E SAK   N+E AF+E A  IY 
Sbjct: 144 -------KQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 109/222 (49%), Gaps = 51/222 (22%)
Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
           A   Y ++FK ++IGD GVGK+C+L +F++  F      TIG++F  + +++ G+KIKLQ
Sbjct: 23  APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 82
Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           IWDTAGQ RF  +T SYYRGA G ++VYDIT   +++++  WL +     N +   +++G
Sbjct: 83  IWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 142
Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
              D   Q                     D+T E++                        
Sbjct: 143 NKADLEAQR--------------------DVTYEEA------------------------ 158
Query: 182 WVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223
                  +  A E G+ F+E SAK   N+E AF+E A  IY 
Sbjct: 159 -------KQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 193

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  128 bits (321), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 94/140 (67%), Gaps = 11/140 (7%)
Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK------ 54
           M+   YD+L K L +GDSGVGKT VL++++D  FN+ FI+T+GIDF+ K V  +      
Sbjct: 3   MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62
Query: 55  ----GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 110
               G++I LQ+WDTAG ERF ++TT+++R AMG +L++D+TNE+SF N+  W+  +  H
Sbjct: 63  AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 122
Query: 111 A-NEDVEKMILGKTKDTAGQ 129
           A +E+ + ++ G   D   Q
Sbjct: 123 AYSENPDIVLCGNKSDLEDQ 142

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  127 bits (318), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 88/125 (70%)
Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           +  +TYDFLFK L+IG++G GK+C+L +F +  F      TIG++F  K +++ GK +KL
Sbjct: 3   LGSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKL 62
Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERF ++T SYYRGA G +LVYDIT+ ++++ +  WL +    A++++  ++ 
Sbjct: 63  QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC 122
Query: 121 GKTKD 125
           G  KD
Sbjct: 123 GNKKD 127

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 66/113 (58%), Gaps = 16/113 (14%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
           DTAGQERF ++T SYYRGA G +LVYDIT+ ++++ +  WL +    A+++  ++   +C
Sbjct: 66  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVII---LC 122
Query: 185 KHR-------------GEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
            ++                 A+E  + F+ETSA    ++E+AF++ A  I +K
Sbjct: 123 GNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 175

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  127 bits (318), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K+L+IG+SGVGK+ +L RF+DD F+    +TIG+DFK+KT+ + G K KL IWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE-DVEKMILGKTKDTAG 128
           RF T+T SYYRGA G++LVYD+T   +F  +  WL  ++ +    D+   ++G   D   
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKEN 135
Query: 129 QE 130
           +E
Sbjct: 136 RE 137

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAGQERF T+T SYYRGA G++LVYD+T   +F  +  WL  ++ +   +  V      
Sbjct: 70  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGN 129
Query: 179 ----VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                N  V ++ G   AR++   F+E SAK    ++ AF EL   I
Sbjct: 130 KIDKENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/122 (46%), Positives = 87/122 (71%)
Query: 4   KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
           +TYDFLFK L+IG++G GK+C+L +F +  F      TIG++F  K +++ GK +KLQIW
Sbjct: 5   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 64  DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
           DTAGQERF ++T SYYRGA G +LVYDIT+ ++++ +  WL +    A++++  ++ G  
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 124
Query: 124 KD 125
           KD
Sbjct: 125 KD 126

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 18/121 (14%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
           DTAGQERF ++T SYYRGA G +LVYDIT+ ++++ +  WL +    A+++  ++   +C
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVII---LC 121
Query: 185 KHR-------------GEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT-SGR-D 229
            ++                 A+E  + F+ETSA    N+E+AF++ A  I +K  SG  D
Sbjct: 122 GNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181
Query: 230 P 230
           P
Sbjct: 182 P 182

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 113/218 (51%), Gaps = 51/218 (23%)
Query: 7   DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66
           DFLFK L+IG +G GK+C+L +F ++ F      TIG++F  + V++ GK +KLQIWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 67  GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT 126
           GQERF ++T SYYRGA G +LVYDIT+ ++++++  WL +    A+ ++  ++ G  KD 
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
                                                           DP+   +++   
Sbjct: 143 ------------------------------------------------DPEREVTFLEAS 154
Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
           R    A+E  + F+ETSA    N+E+AF++ A  I +K
Sbjct: 155 R---FAQENELMFLETSALTGENVEEAFLKCARTILNK 189

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 109/216 (50%), Gaps = 45/216 (20%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +K++L GD+ VGK+  L R   + F     +T+G+DF++KT+ + G++  LQ+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           RF +I  SY+R A G++L+YD+T EKSF NI +W+  I++ A+E V  M++G   D    
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR-- 146
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                                  D  A E  + V      H GE
Sbjct: 147 ---------------------------------------DTAATEGQKCVPG----HFGE 163
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225
            +A  YG  F ETSAK   NI +A + LA  +  +T
Sbjct: 164 KLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRT 199

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 112/219 (51%), Gaps = 62/219 (28%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV----------DLKG 55
           YD+L KLL +GDSGVGKT  L+R++D+ FN  FI+T+GIDF+ K V            K 
Sbjct: 22  YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 81
Query: 56  KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-ED 114
            K+ LQ+WDTAGQERF ++TT+++R AMG +L++D+T+++SF N+  W+  +  +A  E+
Sbjct: 82  FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 141
Query: 115 VEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE 174
            + +++G   D   Q                                    R ++E    
Sbjct: 142 PDIVLIGNKADLPDQ------------------------------------REVNE---- 161
Query: 175 DPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKA 213
                       +   +A +YG+ + ETSA    N+EKA
Sbjct: 162 -----------RQARELADKYGIPYFETSAATGQNVEKA 189

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  123 bits (309), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 102/163 (62%), Gaps = 5/163 (3%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           Y+F+FK++LIG+SGVGKT +L RF+ + F+    +TIG++F  +TV L    +K QIWDT
Sbjct: 22  YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 81
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AG ER+  IT++YYRGA+G +LV+D+T  +++  + +WL+ + +HA   +  M++G   D
Sbjct: 82  AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 141
Query: 126 TAGQERFHTITTSYYRGAMGIMLV----YDITN-EKSFDNILK 163
            +      T     +    G++ +     D TN E +F+ +LK
Sbjct: 142 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLK 184

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 14/114 (12%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
           DTAG ER+  IT++YYRGA+G +LV+D+T  +++  + +WL+ + +HA  +  +V   V 
Sbjct: 80  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVG 137
Query: 185 KHRGEAIAREY------------GVRFMETSAKANINIEKAFIELATAIYDKTS 226
                + ARE             G+ F+ETSA  + N+E AF  +   I+ K S
Sbjct: 138 NKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  123 bits (309), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 102/163 (62%), Gaps = 5/163 (3%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           Y+F+FK++LIG+SGVGKT +L RF+ + F+    +TIG++F  +TV L    +K QIWDT
Sbjct: 7   YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 66
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AG ER+  IT++YYRGA+G +LV+D+T  +++  + +WL+ + +HA   +  M++G   D
Sbjct: 67  AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 126
Query: 126 TAGQERFHTITTSYYRGAMGIMLV----YDITN-EKSFDNILK 163
            +      T     +    G++ +     D TN E +F+ +LK
Sbjct: 127 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLK 169

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 14/114 (12%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
           DTAG ER+  IT++YYRGA+G +LV+D+T  +++  + +WL+ + +HA  +  +V   V 
Sbjct: 65  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVG 122
Query: 185 KHRGEAIAREY------------GVRFMETSAKANINIEKAFIELATAIYDKTS 226
                + ARE             G+ F+ETSA  + N+E AF  +   I+ K S
Sbjct: 123 NKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 176

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 86/122 (70%)
Query: 4   KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
           +TYDFLFK L+IG++G GK+C+L +F +  F      TIG++F  K +++ GK +KLQIW
Sbjct: 3   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 64  DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
           DTAG ERF ++T SYYRGA G +LVYDIT+ ++++ +  WL +    A++++  ++ G  
Sbjct: 63  DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 122
Query: 124 KD 125
           KD
Sbjct: 123 KD 124

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 16/113 (14%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
           DTAG ERF ++T SYYRGA G +LVYDIT+ ++++ +  WL +    A+++  ++   +C
Sbjct: 63  DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVII---LC 119
Query: 185 KHR-------------GEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
            ++                 A+E  + F+ETSA    ++E+AF++ A  I +K
Sbjct: 120 GNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 172

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 62/224 (27%)
Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV--DLKGK-- 56
           M    YD+L KLL +GDSGVGKT  L+R++D+ FN  FI+T+GIDF+ K V  D +G   
Sbjct: 3   MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADG 62
Query: 57  ------KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 110
                 K+ LQ+WDTAG ERF ++TT+++R AMG +L++D+T+++SF N+  W+  +  +
Sbjct: 63  ASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 122
Query: 111 AN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169
           A  E+ + +++G   D   Q                                    R ++
Sbjct: 123 AYCENPDIVLIGNKADLPDQ------------------------------------REVN 146
Query: 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKA 213
           E                +   +A +YG+ + ETSA    N+EK+
Sbjct: 147 E---------------RQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 62/224 (27%)
Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV--DLKGK-- 56
           M    YD+L KLL +GDSGVGKT  L+R++D+ FN  FI+T+GIDF+ K V  D +G   
Sbjct: 3   MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADG 62
Query: 57  ------KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 110
                 K+ LQ+WDTAG ERF ++TT+++R AMG +L++D+T+++SF N+  W+  +  +
Sbjct: 63  ASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 122
Query: 111 A-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID 169
           A  E+ + +++G   D   Q                                    R ++
Sbjct: 123 AYCENPDIVLIGNKADLPDQ------------------------------------REVN 146
Query: 170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKA 213
           E                +   +A +YG+ + ETSA    N+EK+
Sbjct: 147 E---------------RQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  117 bits (293), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 103/212 (48%), Gaps = 51/212 (24%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+ +G+  VGKT ++ RF  D+F+ T+ +TIGIDF  KT+ L+ + I+LQ+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           RF ++  SY R +   ++VYDITN  SF    KW+ ++      DV  M++G   D A +
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
            +                                                   V    GE
Sbjct: 127 RQ---------------------------------------------------VSIEEGE 135
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
             A+E  V F+ETSAKA  N+++ F  +A A+
Sbjct: 136 RKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  117 bits (292), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 115/245 (46%), Gaps = 52/245 (21%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+ +G+  VGKT ++ RF  D+F+ T+ +TIGIDF  KT+ L+ + I+LQ+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           RF ++  SY R +   ++VYDITN  SF    KW+ ++      DV  M++G   D A +
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
            +                                                   V    GE
Sbjct: 134 RQ---------------------------------------------------VSIEEGE 142
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD-PLEAPDRVTIDKKPDRGGM 248
             A+E  V F+ETSAKA  N+++ F  +A A+    S +D   E    + ++K  ++   
Sbjct: 143 RKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVS 202
Query: 249 AGGCC 253
            GGC 
Sbjct: 203 EGGCS 207

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  117 bits (292), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 62/219 (28%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV--DLKGK------- 56
           YD+L KLL +GDSGVGKT  L+R++D+ FN  FI+T+GIDF+ K V  D +G        
Sbjct: 8   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 57  -KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-ED 114
            K+ LQ+WDTAG ERF ++TT+++R A G +L +D+T+++SF N+  W   +  +A  E+
Sbjct: 68  FKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCEN 127
Query: 115 VEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE 174
            + +++G   D   Q                                    R ++E    
Sbjct: 128 PDIVLIGNKADLPDQ------------------------------------REVNE---- 147
Query: 175 DPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKA 213
                       +   +A +YG+ + ETSA    N+EK+
Sbjct: 148 -----------RQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 89/135 (65%), Gaps = 11/135 (8%)
Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV--DLKGK------- 56
           YD+L KLL +GDSGVGKT  L+R++D+ FN  FI+T+GIDF+ K V  D +G        
Sbjct: 8   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 57  -KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-ED 114
            K+ LQ+WDTAG ERF ++TT+++R A G +L +D+T+++SF N+  W   +  +A  E+
Sbjct: 68  FKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCEN 127
Query: 115 VEKMILGKTKDTAGQ 129
            + +++G   D   Q
Sbjct: 128 PDIVLIGNKADLPDQ 142

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 115/245 (46%), Gaps = 52/245 (21%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+ +G+  VGKT ++ RF  D+F+ T+ +TIGIDF  KT+ L+ + ++LQ+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           RF ++  SY R +   ++VYDITN  SF    KW+ ++      DV  M++G   D A +
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
            +                                                   V    GE
Sbjct: 137 RQ---------------------------------------------------VSIEEGE 145
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD-PLEAPDRVTIDKKPDRGGM 248
             A+E  V F+ETSAKA  N+++ F  +A A+    S +D   E    + ++K  ++   
Sbjct: 146 RKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVS 205
Query: 249 AGGCC 253
            GGC 
Sbjct: 206 EGGCL 210

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 103/212 (48%), Gaps = 51/212 (24%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+ +G+  VGKT ++ RF  D+F+ T+ +TIGIDF  KT+ L+ + ++LQ+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           RF ++  SY R +   ++VYDITN  SF    KW+ ++      DV  M++G   D A +
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
            +                                                   V    GE
Sbjct: 122 RQ---------------------------------------------------VSIEEGE 130
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
             A+E  V F+ETSAKA  N+++ F  +A A+
Sbjct: 131 RKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  114 bits (285), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 103/212 (48%), Gaps = 51/212 (24%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+ +G+  VGKT ++ RF  D+F+ T+ +TIGIDF  KT+ L+ + ++LQ+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           RF ++  SY R +   ++VYDITN  SF    KW+ ++      DV  M++G   D + +
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
            +  T                                                     GE
Sbjct: 135 RQVST---------------------------------------------------EEGE 143
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
             A+E  V F+ETSAKA  N+++ F  +A A+
Sbjct: 144 RKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  114 bits (285), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 89/169 (52%), Gaps = 5/169 (2%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K+ L+GD+GVGK+ ++ RF  D F+     TIG  F  KTV    +  K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           RFH++   YYRG+   ++VYDIT + SF  + KW++ + EH  E++   I G   D +  
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 130 ERFHTITTSYYRGAMGIMLVYD-----ITNEKSFDNILKWLRNIDEHAN 173
                     Y  ++G ++V       I  E+ F  I + +  +D H N
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHEN 192

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 14/118 (11%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
           DTAGQERFH++   YYRG+   ++VYDIT + SF  + KW++ + EH  E+  +  +   
Sbjct: 78  DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNK 137
Query: 183 --------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLE 232
                   V     +  A   G   +ETSAK  INIE    EL   I  +    DP E
Sbjct: 138 CDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE----ELFQGISRQIPPLDPHE 191

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 104/214 (48%), Gaps = 51/214 (23%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+ +G+  VGKT ++ RF  D+F+ T+ +TIGIDF  KT+ L+ + ++LQ+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           RF ++  SY R +   ++VYDITN  SF    KW+ ++      DV  M++G   D A +
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
            +                                                   +    GE
Sbjct: 123 RQ---------------------------------------------------ITIEEGE 131
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYD 223
             A+E  V F+ETSAK   N+++ F  +A+A+ +
Sbjct: 132 QRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 105/220 (47%), Gaps = 51/220 (23%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+ +G+  VGKT ++ RF  D+F+ T+ +TIGIDF  KT+ L+ + ++LQ+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           RF ++  SY R +   ++VYDITN  SF    KW+ ++      DV  M++G   D A +
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
            +                                                   V    GE
Sbjct: 127 RQ---------------------------------------------------VSIEEGE 135
Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD 229
             A+E  V F+ETSAKA  N+++ F  +A A+    S +D
Sbjct: 136 RKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD 175

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  110 bits (275), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 79/120 (65%), Gaps = 4/120 (3%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           +FK+++IGDS VGKTC+ +RF    F     +TIG+DF+ + VD+ G++IK+Q+WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 69  ERFH-TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH--ANEDVEKMILGKTKD 125
           ERF  ++   YYR    ++ VYD TN  SF ++  W+    +H  AN D+ ++++G   D
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAN-DIPRILVGNKCD 147

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 125 DTAGQERFH-TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH--ANEDPQVVNS 181
           DTAGQERF  ++   YYR    ++ VYD TN  SF ++  W+    +H  AN+ P+++  
Sbjct: 84  DTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVG 143
Query: 182 WVCKHR---------GEAIAREYGVRFMETSAKA---NINIEKAFIELA 218
             C  R          +  A  +     ETSAK    N ++E  F  LA
Sbjct: 144 NKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLA 192

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 80/120 (66%), Gaps = 4/120 (3%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           +FK+++IGDS VGKTC+ +RF    F     +TIG+DF+ + VD+ G++IK+Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 69  ERFH-TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH--ANEDVEKMILGKTKD 125
           ERF  ++   YYR    ++ VYD+TN  SF ++  W+    +H  AN D+ ++++G   D
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN-DIPRILVGNKCD 138

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 15/109 (13%)
Query: 125 DTAGQERFH-TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH--ANEDPQVVNS 181
           DTAGQERF  ++   YYR    ++ VYD+TN  SF ++  W+    +H  AN+ P+++  
Sbjct: 75  DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 134
Query: 182 WVCKHR---------GEAIAREYGVRFMETSAKA---NINIEKAFIELA 218
             C  R          +  A  + +   ETSAK    N ++E  F+ LA
Sbjct: 135 NKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 183

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 76/116 (65%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+ +G+  VGKT ++ RF  D F+  + STIGIDF  KT+ L    ++LQ+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           RF ++  SY R +   ++VYDITN +SF+N  KW+++I     +DV   ++G   D
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTD 117

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED---PQVVNS 181
           DTAGQERF ++  SY R +   ++VYDITN +SF+N  KW+++I     +D     V N 
Sbjct: 56  DTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 115
Query: 182 W-------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                   V    G   A+EY   F ETSAKA  NI+  F + A+ +
Sbjct: 116 TDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  107 bits (267), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 74/120 (61%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+G+S VGK+ ++ RF    F+    STIG  F  +TV L    +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           R+H++   YYRGA   ++VYDITNE+SF     W++ +   A+ ++   + G   D A +
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
           DTAGQER+H++   YYRGA   ++VYDITNE+SF     W++ +   A+  P +V +   
Sbjct: 62  DTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSG 119
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
                     V     ++ A +  + F ETSAK + N+ + F  +A
Sbjct: 120 NKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIA 165

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  107 bits (266), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 74/120 (61%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+G+S VGK+ ++ RF    F+    STIG  F  +TV L    +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           R+H++   YYRGA   ++VYDITNE+SF     W++ +   A+ ++   + G   D A +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
           DTAGQER+H++   YYRGA   ++VYDITNE+SF     W++ +   A+  P +V +   
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSG 118
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
                     V     ++ A +  + FMETSAK ++N+ + F+ +A
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  107 bits (266), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 74/120 (61%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+G+S VGK+ ++ RF    F+    STIG  F  +TV L    +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           R+H++   YYRGA   ++VYDITNE+SF     W++ +   A+ ++   + G   D A +
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
           DTAGQER+H++   YYRGA   ++VYDITNE+SF     W++ +   A+  P +V +   
Sbjct: 62  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSG 119
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
                     V     ++ A +  + FMETSAK ++N+ + F+ +A
Sbjct: 120 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 165

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 78/122 (63%), Gaps = 5/122 (4%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIK-LQIWDTAG 67
           + K++++GDSGVGKT ++ R+ +D ++  + +TIG DF  K V + G K+  +Q+WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 68  QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKT 123
           QERF ++  ++YRGA   +LVYD+TN  SF+NI  W      HAN    E    +ILG  
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 124 KD 125
            D
Sbjct: 128 ID 129

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 114 DVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN 173
           D +K+   +  DTAGQERF ++  ++YRGA   +LVYD+TN  SF+NI  W      HAN
Sbjct: 53  DGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHAN 112
Query: 174 E---------------DPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIEL 217
                           D +     V +   + +A+  G +    TSAK  IN++ AF E+
Sbjct: 113 VNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172
Query: 218 A 218
           A
Sbjct: 173 A 173

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 74/120 (61%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+G+S VGK+ ++ RF    F+    STIG  F  +TV L    +K +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           R+H++   YYRGA   ++VYDITNE+SF     W++ +   A+ ++   + G   D A +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
           DTAGQER+H++   YYRGA   ++VYDITNE+SF     W++ +   A+  P +V +   
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSG 118
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
                     V     ++ A +  + FMETSAK ++N+ + F+ +A
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 81/138 (58%)
Query: 8   FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
           + FK++L+G+  VGKT ++ R+ ++ FN   I+T+G  F  K +++ GK++ L IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 68  QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127
           QERFH +   YYR + G +LVYDIT+E SF  +  W++ + +    ++   I+G   D  
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 128 GQERFHTITTSYYRGAMG 145
            +          Y  ++G
Sbjct: 125 KERHVSIQEAESYAESVG 142

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH-ANEDPQVV---- 179
           DTAGQERFH +   YYR + G +LVYDIT+E SF  +  W++ + +   NE    +    
Sbjct: 61  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
                   V     E+ A   G +   TSAK N  IE+ F++L 
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 164

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 74/120 (61%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+G+S VGK+ ++ RF    F+    STIG  F  +TV L    +K +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           R+H++   YYRGA   ++VYDITNE+SF     W++ +   A+ ++   + G   D A +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
           DTAGQER+H++   YYRGA   ++VYDITNE+SF     W++ +   A+  P +V +   
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSG 118
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
                     V     ++ A +  + FMETSAK ++N+ + F+ +A
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 74/120 (61%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+G+S VGK+ ++ RF    F+    STIG  F  +TV L    +K +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           R+H++   YYRGA   ++VYDITNE+SF     W++ +   A+ ++   + G   D A +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
           DTAGQER+H++   YYRGA   ++VYDITNE+SF     W++ +   A+  P +V +   
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSG 118
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
                     V     ++ A +  + FMETSAK ++N+ + F+ +A
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 74/120 (61%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+G+S VGK+ ++ RF    F+    STIG  F  +TV L    +K +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           R+H++   YYRGA   ++VYDITNE+SF     W++ +   A+ ++   + G   D A +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
           DTAGQER+H++   YYRGA   ++VYDITNE+SF     W++ +   A+  P +V +   
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSG 118
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
                     V     ++ A +  + FMETSAK ++N+ + F+ +A
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 74/120 (61%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+G+S VGK+ ++ RF    F+    STIG  F  +TV L    +K +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           R+H++   YYRGA   ++VYDITNE+SF     W++ +   A+ ++   + G   D A +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
           DTAGQER+H++   YYRGA   ++VYDITNE+SF     W++ +   A+  P +V +   
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSG 118
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
                     V     ++ A +  + FMETSAK ++N+ + F+ +A
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 70/116 (60%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K+ L+GD+GVGK+ +++RF +D+F+     TIG  F  KTV  + +  K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           RF  +   YYRG+   ++VYDIT E++F  +  W+R + +H    +   I G   D
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 121

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV- 183
           DTAGQERF  +   YYRG+   ++VYDIT E++F  +  W+R + +H    P +V +   
Sbjct: 60  DTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG--PPSIVVAIAG 117
Query: 184 -------CKHRGEAIAREYG----VRFMETSAKANINIEKAFIELATAI 221
                   +   E  A++Y       F+ETSAK  INI + FIE++  I
Sbjct: 118 NKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 51/208 (24%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+L+GD G GK+ ++ RF  D F     STIG  F  +T+ +    +K +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
           +H++   YYRGA   ++V+D+TN+ SF+   KW++ +    N ++   + G   D     
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSD----- 128
Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
                                             L +  +   ED Q             
Sbjct: 129 ----------------------------------LLDARKVTAEDAQT------------ 142
Query: 191 IAREYGVRFMETSAKANINIEKAFIELA 218
            A+E G+ FMETSAK   N+++ F E+A
Sbjct: 143 YAQENGLFFMETSAKTATNVKEIFYEIA 170

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 73/120 (60%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+G+S VGK+ ++ RF    F+    STIG  F  ++V L    +K +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           R+H++   YYRGA   ++VYDITN+++F     W++ +   A+  +   + G   D A +
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQER+H++   YYRGA   ++VYDITN+++F     W++ +   A+  P +V     
Sbjct: 63  DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQAS--PSIVIALAG 120
Query: 180 -------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
                     V     +A A +  + FMETSAK  +N+   F+ +A
Sbjct: 121 NKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIA 166

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  103 bits (258), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 73/120 (60%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+G+S VGK+ ++ RF    F+    STIG  F  +TV L    +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           R+H++   YYRGA   ++VYDITNE+SF     W++ +   A+ ++   + G   D A +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
           DTAG ER+H++   YYRGA   ++VYDITNE+SF     W++ +   A+  P +V +   
Sbjct: 60  DTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSG 117
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
                     V     ++ A +  + FMETSAK ++N+ + F+ +A
Sbjct: 118 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 163

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 72/120 (60%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+G+S VGK+ ++ RF    F+    STIG  F  +TV L    +K +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           R+H++   YYRGA   ++VYDITN  +F     W++ +   A+ ++   + G   D A +
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
           DTAGQER+H++   YYRGA   ++VYDITN  +F     W++ +   A+  P +V +   
Sbjct: 58  DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS--PNIVIALAG 115
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
                     V     +A A +  + FMETSAK  +N+ + F+ +A
Sbjct: 116 NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 161

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 80/138 (57%)
Query: 8   FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
           + FK++L+G+  VGKT ++ R+ ++ FN   I+T+   F  K +++ GK++ L IWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 68  QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127
           QERFH +   YYR + G +LVYDIT+E SF  +  W++ + +    ++   I+G   D  
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 128 GQERFHTITTSYYRGAMG 145
            +          Y  ++G
Sbjct: 139 KERHVSIQEAESYAESVG 156

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH-ANEDPQVV---- 179
           DTAGQERFH +   YYR + G +LVYDIT+E SF  +  W++ + +   NE    +    
Sbjct: 75  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 134
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
                   V     E+ A   G +   TSAK N  IE+ F++L 
Sbjct: 135 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 178

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 80/138 (57%)
Query: 8   FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
           + FK++L+G+  VGKT ++ R+ ++ FN   I+T+   F  K +++ GK++ L IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 68  QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127
           QERFH +   YYR + G +LVYDIT+E SF  +  W++ + +    ++   I+G   D  
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 128 GQERFHTITTSYYRGAMG 145
            +          Y  ++G
Sbjct: 125 KERHVSIQEAESYAESVG 142

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH-ANEDPQVV---- 179
           DTAGQERFH +   YYR + G +LVYDIT+E SF  +  W++ + +   NE    +    
Sbjct: 61  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
                   V     E+ A   G +   TSAK N  IE+ F++L 
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 164

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 69/116 (59%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K+ L+GD+GVGK+ +++RF +D+F+     TIG  F  KTV  + +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           RF  +   YYRG+   ++VYDIT E++F  +  W+R + +H    +   I G   D
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 122

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  100 bits (249), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 71/120 (59%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+G+S VGK+ ++ RF    F+    STI   F  +TV L    +K +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           R+H++   YYRGA   ++VYDITN  +F     W++ +   A+ ++   + G   D A +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
           DTAGQER+H++   YYRGA   ++VYDITN  +F     W++ +   A+  P +V +   
Sbjct: 60  DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS--PNIVIALAG 117
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
                     V     +A A +  + FMETSAK  +N+ + F+ +A
Sbjct: 118 NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  100 bits (249), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 71/120 (59%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+G+S VGK+ ++ RF    F+    STIG  F  +TV L    +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           R+H++   YYRGA   ++VYDITN  +F     W++ +   A+ ++   + G   D A +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 14/106 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW-- 182
           DTAG ER+H++   YYRGA   ++VYDITN  +F     W++ +   A+  P +V +   
Sbjct: 60  DTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS--PNIVIALAG 117
Query: 183 ----------VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
                     V     +A A +  + FMETSAK  +N+ + F+ +A
Sbjct: 118 NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA 163

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           LFK++L+GD GVGK+ ++ R+  + F+T    TIG++F  K +++ G  + +QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTK 124
           ERF ++ T +YRG+   +L + + + +SF N+  W +    +A+    E    +ILG   
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 125 DTAGQE 130
           D + ++
Sbjct: 129 DISERQ 134

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           LFK++L+GD GVGK+ ++ R+  + F+T    TIG++F  K +++ G  + +QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTK 124
           ERF ++ T +YRG+   +L + + + +SF N+  W +    +A+    E    +ILG   
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 125 DTAGQE 130
           D + ++
Sbjct: 127 DISERQ 132

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 92/213 (43%), Gaps = 52/213 (24%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+L+G++ VGK+ ++ RF  + F      TIG  F  + V +    +K +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD--TAG 128
           F ++   YYR A   ++VYD+T  +SF     W++ + E A++D+   ++G   D    G
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
            ER                                                   V +  G
Sbjct: 125 GER--------------------------------------------------KVAREEG 134
Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAI 221
           E +A E G+ F ETSAK   N+   F+ +   I
Sbjct: 135 EKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 75/121 (61%), Gaps = 4/121 (3%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           LFK++L+GD GVGK+ ++ R+  + F++    TIG++F  K +++ G  + +QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTK 124
           ERF ++ T +YRG+   +L + + + +SF N+  W +    +A+    E    +ILG   
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 125 D 125
           D
Sbjct: 131 D 131

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 115/247 (46%), Gaps = 51/247 (20%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K++++GDSGVGKT ++ ++ +  F+  + +TIG DF  K V +  + + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
           ERF ++  ++YRGA   +LV+D+T   +F  +  W    DE        +I    +D   
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR---DEF-------LIQASPRDP-- 115
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
            E F  +                + N+  F+                    N  V   R 
Sbjct: 116 -ENFPFVV---------------LGNKIDFE--------------------NRQVATKRA 139
Query: 189 EA-IAREYGVRFMETSAKANINIEKAFIELA-TAIYDKTSGRDPLEAPDRVTIDKKPDRG 246
           +A    +  + + ETSAK  IN+E+AF  +A  A+  +T      E P+ + +DK  DR 
Sbjct: 140 QAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKN-DRA 198
Query: 247 GMAGGCC 253
             +   C
Sbjct: 199 KASAESC 205

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 114/246 (46%), Gaps = 50/246 (20%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K++++GDSGVGKT ++ ++ +  F+  + +TIG DF  K V +  + + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
           ERF ++  ++YRGA   +LV+D+T   +F  +  W    DE        +I    +D   
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR---DEF-------LIQASPRDP-- 115
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
            E F  +        +G  +  D+ N +                          V   R 
Sbjct: 116 -ENFPFVV-------LGNKI--DLENRQ--------------------------VATKRA 139
Query: 189 EA-IAREYGVRFMETSAKANINIEKAFIELA-TAIYDKTSGRDPLEAPDRVTIDKKPDRG 246
           +A    +  + + ETSAK  IN+E+AF  +A  A+  +T      E P+ + +DK     
Sbjct: 140 QAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAK 199
Query: 247 GMAGGC 252
             A  C
Sbjct: 200 ASAESC 205

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 70/105 (66%)
Query: 8   FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
            L K++L+GD GVGK+ ++ R+  + F++    TIG++F  + +++ G+ + LQIWDTAG
Sbjct: 6   LLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAG 65
Query: 68  QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN 112
           QERF ++ T +YRGA   +L + + + +SF+N+  W +    +A+
Sbjct: 66  QERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYAD 110

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 64/95 (67%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K++++GDSGVGKT ++ ++ +  F+  + +TIG DF  K V +  + + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW 103
           ERF ++  ++YRGA   +LV+D+T   +F  +  W
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW 102

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 116 EKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN-IDEHANE 174
           ++++  +  DTAGQERF ++  ++YRGA   +LV+D+T   +F  +  W    + + +  
Sbjct: 54  DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPR 113
Query: 175 DPQ------------VVNSWVCKHRGEA-IAREYGVRFMETSAKANINIEKAFIELA 218
           DP+            + N  V   R +A    +  + + ETSAK  IN+E+AF  +A
Sbjct: 114 DPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 115/247 (46%), Gaps = 51/247 (20%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K++++GDSGVGKT ++ ++ +  F+  + +TIG DF  K V +  + + +QIWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
           ERF ++  ++YRGA   +LV+D+T   +F  +  W    DE        +I    +D   
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR---DEF-------LIQASPRDP-- 115
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
            E F  +        +G  +  D+ N +                          V   R 
Sbjct: 116 -ENFPFVV-------LGNKI--DLENRQ--------------------------VATKRA 139
Query: 189 EA-IAREYGVRFMETSAKANINIEKAFIELA-TAIYDKTSGRDPLEAPDRVTIDKKPDRG 246
           +A    +  + + ETSAK  IN+E+AF  +A  A+  +T      E P+ + +DK  DR 
Sbjct: 140 QAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKN-DRA 198
Query: 247 GMAGGCC 253
             +   C
Sbjct: 199 KASAESC 205

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 45/211 (21%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K++L+GD G GKT +L  F+D AF  ++  T+   + +  + +KGK + L IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILG-KTKDTAG 128
           +  +   +Y  A  ++L +D+T+  SFDNI  +W   ++ H  + V  +++G KT     
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKT----- 148
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                 D+  +KS  N L+  RN  E            V  HRG
Sbjct: 149 ----------------------DLRKDKSLVNKLR--RNGLEP-----------VTYHRG 173
Query: 189 EAIAREYG-VRFMETSAKANINIEKAFIELA 218
           + +AR  G V ++E SA+ + N+   F E A
Sbjct: 174 QEMARSVGAVAYLECSARLHDNVHAVFQEAA 204

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 60/98 (61%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K++++G+  VGK+ ++ R+    F   +  TIG+DF  + + +  + ++L +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
            F  IT +YYRGA   +LV+  T+ +SF+ I  W   +
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV 103

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 13/116 (11%)
Query: 112 NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 171
           +EDV  M+     DTAGQE F  IT +YYRGA   +LV+  T+ +SF+ I  W   +   
Sbjct: 51  DEDVRLMLW----DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE 106
Query: 172 ANEDPQVV---------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
             + P  +         +S +     E +A+   +RF  TS K ++N+ + F  LA
Sbjct: 107 VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 7   DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIG-IDFKIKTVDLKGKKIKLQIWDT 65
           +  +K+ LIGD GVGKT  + R  D  F   + +T+G ++  +  +D +G  IK  +WDT
Sbjct: 9   ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDT 68
Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR 105
           AGQE+   +   YY GA G +L +D+T+  +  N+ +W++
Sbjct: 69  AGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVK 108

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDPQVV--NS 181
           DTAGQE+   +   YY GA G +L +D+T+  +  N+ +W++       NE P VV  N 
Sbjct: 67  DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANK 126
Query: 182 WVCKHRGE-------AIAREYGVRFMETSAKANINIEKAFIELA 218
              K+R +        + +     + E SAK   N    F+ LA
Sbjct: 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLA 170

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK-KIKLQIWDTAGQ 68
            K++++GD   GKT +   F+ + F   +  TIG+DF ++ + L G   + LQIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
                +   Y  GA G++LVYDITN +SF+N+  W   + + + E   + ++    +   
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 129 QERFHTI 135
            E   TI
Sbjct: 127 LEHMRTI 133

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 103 WLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL 162
           +LR I    N +V   I     D  GQ     +   Y  GA G++LVYDITN +SF+N+ 
Sbjct: 44  FLRRITLPGNLNVTLQIW----DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLE 99
Query: 163 KW---LRNIDEHANEDPQV 178
            W   ++ + E +   P V
Sbjct: 100 DWYTVVKKVSEESETQPLV 118

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L  FS D F   ++ T+  ++ +  +++ GK+++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD    
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 126
Query: 130 ERFHT 134
           E  HT
Sbjct: 127 E--HT 129

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L  FS D F   ++ T+  ++ +  +++ GK+++L +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD    
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 128
Query: 130 ERFHT 134
           E  HT
Sbjct: 129 E--HT 131

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L  FS D F   ++ T+  ++ +  +++ GK+++L +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD    
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 125
Query: 130 ERFHT 134
           E  HT
Sbjct: 126 E--HT 128

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L  FS D F   ++ T+  ++ I  +++ GK+++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD    
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFXPNVPIILVGNKKDLRQD 144
Query: 130 ERFHT 134
           E  HT
Sbjct: 145 E--HT 147

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L  FS D F   ++ T+  ++ +  +++ GK+++L +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD    
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 125
Query: 130 ERFHT 134
           E  HT
Sbjct: 126 E--HT 128

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L  FS D F   ++ T+  ++ +  +++ GK+++L +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD    
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 127
Query: 130 ERFHT 134
           E  HT
Sbjct: 128 E--HT 130

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L  FS D F   ++ T+  ++ +  +++ GK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 130 ERFHT 134
           E  HT
Sbjct: 125 E--HT 127

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L  FS D F   ++ T+  ++ I  +++ GK+++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD    
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRQD 144
Query: 130 ERFHT 134
           E  HT
Sbjct: 145 E--HT 147

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L  FS D F   ++ T+  ++ +  +++ GK+++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD    
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 126
Query: 130 ERFHT 134
           E  HT
Sbjct: 127 E--HT 129

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L  FS D F   ++ T+  ++ +  +++ GK+++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD    
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 126
Query: 130 ERFHT 134
           E  HT
Sbjct: 127 E--HT 129

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L  FS D F   ++ T+  ++ +  +++ GK+++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + + +  S +NI  KW+  + +H   +V  +++   KD    
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV-KHFCPNVPIILVANKKDLRSD 144
Query: 130 ERFHT 134
           E   T
Sbjct: 145 EHVRT 149

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L  FS D F   ++ T+  ++ +  +++ GK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +       Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD    
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 130 ERFHT 134
           E  HT
Sbjct: 125 E--HT 127

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R     F   +++T+G++            IK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           +F  +   YY  A   ++++D+T+  ++ N+  W R++
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 113

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAGQE+F  +   YY  A   ++++D+T+  ++ N+  W R++       P V      
Sbjct: 70  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 129
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
            +     K +     R+  +++ + SAK+N N EK F+ LA  +    +      P  AP
Sbjct: 130 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 189
Query: 235 DRVTID 240
             V +D
Sbjct: 190 PEVVMD 195

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R     F   +++T+G++            IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           +F  +   YY  A   ++++D+T+  ++ N+  W R++
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAGQE+F  +   YY  A   ++++D+T+  ++ N+  W R++       P V      
Sbjct: 65  DTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
            +     K +     R+  +++ + SAK+N N EK F+ LA  +    +      P  AP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 184
Query: 235 DRVTID 240
             V +D
Sbjct: 185 PEVVMD 190

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R     F   +++T+G++            IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           +F  +   YY  A   ++++D+T+  ++ N+  W R++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAGQE+F  +   YY  A   ++++D+T+  ++ N+  W R++       P V      
Sbjct: 65  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
            +     K +     R+  +++ + SAK+N N EK F+ LA  +    +      P  AP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 184
Query: 235 DRVTID 240
             V +D
Sbjct: 185 PEVVMD 190

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R     F   +++T+G++            IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           +F  +   YY  A   ++++D+T+  ++ N+  W R++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAGQE+F  +   YY  A   ++++D+T+  ++ N+  W R++       P V      
Sbjct: 65  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
            +     K +     R+  +++ + SAK+N N EK F+ LA  +    +      P  AP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPCLAP 184
Query: 235 DRVTID 240
             V +D
Sbjct: 185 PEVVMD 190

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 6/158 (3%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R     F   +I+TIG++    +      +IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +F  +   YY  A   ++++D+T+  ++ N+  W R++     E++  ++ G   D   +
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVK-E 130
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEK--SFDNILKWL 165
            +    T +++R     +  YDI+ +   +F+    WL
Sbjct: 131 RKVKAKTITFHRKKN--LQYYDISAKSNYNFEKPFLWL 166

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 18/132 (13%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAG E+F  +   YY  A   ++++D+T+  ++ N+  W R++       P V      
Sbjct: 67  DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKV 126
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLE----- 232
            V     K +     R+  +++ + SAK+N N EK F+ LA     K +G   LE     
Sbjct: 127 DVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR----KLAGNPQLEFVASP 182
Query: 233 --APDRVTIDKK 242
             AP  V +D++
Sbjct: 183 ALAPPEVQVDEQ 194

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R     F   ++ T+G++            IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           +F  +   YY  A   ++++D+T+  ++ N+  W R++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAGQE+F  +   YY  A   ++++D+T+  ++ N+  W R++       P V      
Sbjct: 65  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
            +     K +     R+  +++ + SAK+N N EK F+ LA  +    +      P  AP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 184
Query: 235 DRVTID 240
             V +D
Sbjct: 185 PEVVMD 190

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
             K + +GD  VGKTC+L  ++ + F T ++ T+  +F    V + G  + L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTA 127
           E ++ +    YRGA   +L + + ++ S++NI  KWL  + +H    +  +++G   D  
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPEL-KHYAPGIPIVLVGTKLDLR 123
Query: 128 GQERF 132
             ++F
Sbjct: 124 DDKQF 128

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 24/157 (15%)
Query: 81  GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
           GA+G   ML+    N    D +     N   +   D   + LG   DTAGQE ++ +   
Sbjct: 15  GAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLG-LWDTAGQEDYNRLRPL 73
Query: 139 YYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDPQVV------------------ 179
            YRGA   +L + + ++ S++NI  KWL  +  +A   P V+                  
Sbjct: 74  SYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHP 133
Query: 180 -NSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAF 214
             + +   +GE + +  G VR++E S+K   N++  F
Sbjct: 134 GAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
             K + +GD  VGKTC+L  ++ + F T ++ T+  +F    V + G  + L +WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTA 127
           E ++ +    YRGA   +L + + ++ S++N+  KW+  + +H    V  +++G   D  
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDLR 125
Query: 128 GQERF 132
             ++F
Sbjct: 126 DDKQF 130

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R     F   +++T+G++            IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           +F  +   YY  A   ++++D+T+  ++ N+  W R++
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 101

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAGQE+F  +   YY  A   ++++D+T+  ++ N+  W R++       P V      
Sbjct: 58  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 117
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
            +     K +     R+  +++ + SAK+N N EK F+ LA  +    +      P  AP
Sbjct: 118 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 177
Query: 235 DRVTID 240
             V +D
Sbjct: 178 PEVVMD 183

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R     F   +++T+G++            IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           +F  +   YY  A   ++ +D+T+  ++ N+  W R++
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL 108

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAGQE+F  +   YY  A   ++ +D+T+  ++ N+  W R++       P V      
Sbjct: 65  DTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
            +     K +     R+  +++ + SAK+N N EK F+ LA  +    +      P  AP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAXPALAP 184
Query: 235 DRVTID 240
             V  D
Sbjct: 185 PEVVXD 190

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
             K + +GD  VGKTC+L  ++ + F T ++ T+  +F    V + G  + L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTA 127
           E ++ +    YRGA   +L + + ++ S++N+  KW+  +  H    V  +++G   D  
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLR 123
Query: 128 GQERF 132
             ++F
Sbjct: 124 DDKQF 128

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R     F   +++T+G++            IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           +F  +   YY  A   ++++D+T+  ++ N+  W R++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAGQE+F  +   YY  A   ++++D+T+  ++ N+  W R++       P V      
Sbjct: 65  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            +     K +     R+  +++ + SAK+N N EK F+ LA  +
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R     F   +++T+G++            IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           ++  +   YY  A   ++++D+T+  ++ N+  W R++
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAGQE++  +   YY  A   ++++D+T+  ++ N+  W R++       P V      
Sbjct: 65  DTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
            +     K +     R+  +++ + SAK+N N EK F+ LA  +    +      P  AP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 184
Query: 235 DRVTID 240
             V +D
Sbjct: 185 PEVVMD 190

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 6/158 (3%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R     F   +I+TIG++    +      +IK  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +F  +   YY  A   ++++D+T+  ++ N+  W R++     E++  ++ G   D   +
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVK-E 123
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEK--SFDNILKWL 165
            +    T +++R     +  YDI+ +   +F+    WL
Sbjct: 124 RKVKAKTITFHRKKN--LQYYDISAKSNYNFEKPFLWL 159

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAG E+F  +   YY  A   ++++D+T+  ++ N+  W R++       P V      
Sbjct: 60  DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKV 119
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLE 232
            V     K +     R+  +++ + SAK+N N EK F+ LA     K +G   LE
Sbjct: 120 DVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR----KLAGNPQLE 170

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 6/158 (3%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R     F   +I+TIG++    +      +IK  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +F  +   YY  A   ++++D+T+  ++ N+  W R++     E++  ++ G   D   +
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVK-E 122
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEK--SFDNILKWL 165
            +    T +++R     +  YDI+ +   +F+    WL
Sbjct: 123 RKVKAKTITFHRKKN--LQYYDISAKSNYNFEKPFLWL 158

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAG E+F  +   YY  A   ++++D+T+  ++ N+  W R++       P V      
Sbjct: 59  DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKV 118
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLE 232
            V     K +     R+  +++ + SAK+N N EK F+ LA     K +G   LE
Sbjct: 119 DVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR----KLAGNPQLE 169

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R     F   ++ T+G++            IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           +F  +   YY  A   ++++D+T+  ++ N+  W R++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAGQE+F  +   YY  A   ++++D+T+  ++ N+  W R++       P V      
Sbjct: 65  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            +     K +     R+  +++ + SAK+N N EK F+ LA  +
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
             K + +GD  VGKTC+L  ++ + F T +I T+  +F    V + G+ + L +WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAGQ 67
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKD 125
           E +  +    YRGA   +L + + ++ S++N+L KW+  +   A  +V  +++G   D
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLD 124

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 81  GAMG--IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTS 138
           GA+G   ML+   +N+   D I     N   +   D + + LG   DTAGQE +  +   
Sbjct: 18  GAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLG-LWDTAGQEDYSRLRPL 76
Query: 139 YYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDPQVV----------NSWVCKH- 186
            YRGA   +L + + ++ S++N+L KW+  +   A   P V+            ++  H 
Sbjct: 77  SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHT 136
Query: 187 ------RGEAIAREYG-VRFMETSAKANINIEKAF 214
                 +GE + ++ G   ++E S+K   N++  F
Sbjct: 137 NVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L   S D F   ++ T+  ++ +  +++ GK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 130 ERFHT 134
           E  HT
Sbjct: 125 E--HT 127

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L   S D F   ++ T+  ++ +  +++ GK+++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD    
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 122
Query: 130 ERFHT 134
           E  HT
Sbjct: 123 E--HT 125

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L   S D F   ++ T+  ++ +  +++ GK+++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD    
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 122
Query: 130 ERFHT 134
           E  HT
Sbjct: 123 E--HT 125

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L   S D F   ++ T+  ++ I  +++ GK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRQD 124
Query: 130 ERFHT 134
           E  HT
Sbjct: 125 E--HT 127

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L   S D F   ++ T+  ++ +  +++ GK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 130 ERFHT 134
           E  HT
Sbjct: 125 E--HT 127

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L   S D F   ++ T+  ++ +  +++ GK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 130 ERFHT 134
           E  HT
Sbjct: 125 E--HT 127

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MA      + K +++GD  VGKTC+L  +++DAF   ++ T+  D    +V + GK+  L
Sbjct: 10  MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 68
Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMI 119
            ++DTAGQE +  +    Y      ++ + + N  SF N+  +W+  + E+A  +V  ++
Sbjct: 69  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLL 127
Query: 120 LGKTKD 125
           +G   D
Sbjct: 128 IGTQID 133

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 54/98 (55%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R         +++T+G++            IK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           +F  +   YY  A   ++++D+T+  ++ N+  W R++
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 113

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAGQE+F  +   YY  A   ++++D+T+  ++ N+  W R++       P V      
Sbjct: 70  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 129
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
            +     K +     R+  +++ + SAK+N N EK F+ LA  +    +      P  AP
Sbjct: 130 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 189
Query: 235 DRVTID 240
             V +D
Sbjct: 190 PEVVMD 195

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 54/98 (55%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R     F   +++T+G++            IK  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           +F  +   YY  A   ++++D+T+  ++ N+  W R++
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAG E+F  +   YY  A   ++++D+T+  ++ N+  W R++       P V      
Sbjct: 65  DTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAP 234
            +     K +     R+  +++ + SAK+N N EK F+ LA  +    +      P  AP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 184
Query: 235 DRVTID 240
             V +D
Sbjct: 185 PEVVMD 190

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 54/98 (55%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R     F   +++T+G++            IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           +F  +   YY  A   ++++D+T+  ++ N+  W R++
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 110

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAG E+F  +   YY  A   ++++D+T+  ++ N+  W R++       P V      
Sbjct: 67  DTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 126
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
            +     K +     R+  +++ + SAK+N N EK F+ LA
Sbjct: 127 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 167

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 54/98 (55%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R     F   +++T+G++            IK  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           +F  +   YY  A   ++++D+T+  ++ N+  W R++
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 104

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQV------ 178
           DTAG E+F  +   YY  A   ++++D+T+  ++ N+  W R++       P V      
Sbjct: 61  DTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 120
Query: 179 -VNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            +     K +     R+  +++ + SAK+N N EK F+ LA  +
Sbjct: 121 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 54/213 (25%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +   + F   +  TI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAG 128
            +  +   Y R   G + V+ I N KSF++I ++   I     ++DV  +++G   D AG
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                                R ++    +D             
Sbjct: 123 -------------------------------------RTVESRQAQD------------- 132
Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAI 221
             +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 133 --LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 68/125 (54%), Gaps = 5/125 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L   S D F   ++ T+  ++ +  +++ GK+++L +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + I +  S +NI  KW   + +H   +V  +++G  KD    
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 127
Query: 130 ERFHT 134
           E  HT
Sbjct: 128 E--HT 130

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 37/140 (26%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK------------- 56
           +K +L+G+S VGK+ ++ R + D F+    +TIG  F    V+L                
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 57  ------------------------KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT 92
                                    IK  IWDTAGQER+ +I   YYRGA   ++V+DI+
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 93  NEKSFDNILKWLRNIDEHAN 112
           N  + D    W+  +   +N
Sbjct: 128 NSNTLDRAKTWVNQLKISSN 147

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
           DTAGQER+ +I   YYRGA   ++V+DI+N  + D    W+  +   +N    +V + + 
Sbjct: 99  DTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158
Query: 185 KHRGEA-------IAREYGVRFMETSAKANINIEKAFIELATAIY 222
           K++ +         A++  + F++TSAK   NI+  F  LA  IY
Sbjct: 159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K++++GD  VGKTC+L  FS     T ++ T+  +F    +  K ++  L +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 82
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMIL 120
            +  +    Y  +  ++L + + N  SFDNI  KW   I  +   D  K +L
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVL 132

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 54/213 (25%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +   + F   +  TI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAG 128
            +  +   Y R   G + V+ I N KSF++I ++   I     ++DV  +++G   D A 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                                R ++    +D             
Sbjct: 123 -------------------------------------RTVESRQAQD------------- 132
Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAI 221
             +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 133 --LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K++++GD  VGKTC+L  FS     T ++ T+  +F    +  K ++  L +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 81
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMIL 120
            +  +    Y  +  ++L + + N  SFDNI  KW   I  +   D  K +L
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVL 131

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
           DTAGQE F  +   Y R   G +LV+ +T+  SF+ I K+ R I    + D  P ++   
Sbjct: 59  DTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGN 118
Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                    V +  G+ +AR+  V +ME SAK  +N+++AF EL   I
Sbjct: 119 KADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 85/213 (39%), Gaps = 54/213 (25%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +   + F   +  TI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAG 128
            +  +   Y R   G + V+ I N KSF++I  +   I     +EDV  +++G   D   
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                                R +D    +D             
Sbjct: 124 -------------------------------------RTVDTKQAQD------------- 133
Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAI 221
             +AR YG+ F+ETSAK    ++ AF  L   I
Sbjct: 134 --LARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 54/213 (25%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +   + F   +  TI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAG 128
            +  +   Y R   G + V+ I N KSF++I ++   I     ++DV  +++G   D A 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                                R ++    +D             
Sbjct: 123 -------------------------------------RTVESRQAQD------------- 132
Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAI 221
             +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 133 --LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 54/213 (25%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +   + F   +  TI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAG 128
            +  +   Y R   G + V+ I N KSF++I ++   I     ++DV  +++G   D A 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                                R ++    +D             
Sbjct: 123 -------------------------------------RTVESRQAQD------------- 132
Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAI 221
             +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 133 --LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 105

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ +AF+  +I T+  D     V + GK + L +WDTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 115

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 85/213 (39%), Gaps = 54/213 (25%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +   + F   +  TI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAG 128
            +  +   Y R   G + V+ I N KSF++I  +   I     +EDV  +++G   D   
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                                R +D    +D             
Sbjct: 124 -------------------------------------RTVDTKQAQD------------- 133
Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAI 221
             +AR YG+ F+ETSAK    ++ AF  L   I
Sbjct: 134 --LARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 105

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 105

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 63
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 106

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 132

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 63
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 106

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC 107

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC 105

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 105

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 105

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 105

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 105

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC 105

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 81
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 124

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 66
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC 109

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 53/214 (24%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K++++G  GVGK+ +  +F  D F   +  T    ++ K V L G+++++ I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTA 127
           E +  I  +Y+R   G + V+ IT  +SF     +   I     +E+V  +++G   D  
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 131
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
                                                         ED + V+    K+R
Sbjct: 132 ----------------------------------------------EDKRQVSVEEAKNR 145
Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            E    ++ V ++ETSAK   N++K F +L   I
Sbjct: 146 AE----QWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 91/218 (41%), Gaps = 54/218 (24%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K++++G  GVGK+ +  +F  D F   +  T    ++ K V L G+++++ I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANED-VEKMILGKTKDT 126
           E +  I  +Y+R   G +LV+ IT  +SF    ++   I    A ED +  +++G   D 
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
             +ER                                                   V   
Sbjct: 126 --EER-------------------------------------------------RQVPVE 134
Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
              + A E+GV+++ETSAK   N++K F +L   I  K
Sbjct: 135 EARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 91/218 (41%), Gaps = 54/218 (24%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K++++G  GVGK+ +  +F  D F   +  T    ++ K V L G+++++ I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANED-VEKMILGKTKDT 126
           E +  I  +Y+R   G +LV+ IT  +SF    ++   I    A ED +  +++G   D 
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 127 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKH 186
             +ER                                                   V   
Sbjct: 122 --EER-------------------------------------------------RQVPVE 130
Query: 187 RGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
              + A E+GV+++ETSAK   N++K F +L   I  K
Sbjct: 131 EARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 53/214 (24%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K++++G  GVGK+ +  +F  D F   +  T    ++ K V L G+++++ I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTA 127
           E +  I  +Y+R   G + V+ IT  +SF     +   I     +E+V  +++G   D  
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 135
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
                                                         ED + V+    K+R
Sbjct: 136 ----------------------------------------------EDKRQVSVEEAKNR 149
Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            E    ++ V ++ETSAK   N++K F +L   I
Sbjct: 150 AE----QWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 53/214 (24%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K++++G  GVGK+ +  +F  D F   +  T    ++ K V L G+++++ I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTA 127
           E +  I  +Y+R   G + V+ IT  +SF     +   I     +E+V  +++G   D  
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 123
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
                                                         ED + V+    K+R
Sbjct: 124 ----------------------------------------------EDKRQVSVEEAKNR 137
Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            E    ++ V ++ETSAK   N++K F +L   I
Sbjct: 138 AE----QWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGK C+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 112

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +A    +I T+  D     V + GK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 132

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 53/214 (24%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K++++G  GVGK+ +  +F  D F   +  T    ++ K V L G+++++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTA 127
           E +  I  +Y+R   G + V+ IT  +SF     +   I     +E+V  +++G   D  
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 121
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
                                                         ED + V+    K+R
Sbjct: 122 ----------------------------------------------EDKRQVSVEEAKNR 135
Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
               A ++ V ++ETSAK   N++K F +L   I
Sbjct: 136 ----ADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V +  K + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  S++N+  KW   +  H 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC 105

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 105

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 105

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 56/215 (26%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +F    F   +  TI   ++ K V++  ++  L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN--IDEHANEDVEKMILGKTKDTA 127
           +F  +   Y +   G  LVY IT + +F N L+ LR   +     EDV  +++G   D  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVKDTEDVPMILVGNKCDL- 120
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
                                                         ED +VV     K +
Sbjct: 121 ----------------------------------------------EDERVVG----KEQ 130
Query: 188 GEAIAREY-GVRFMETSAKANINIEKAFIELATAI 221
           G+ +AR++    F+E+SAK+ IN+ + F +L   I
Sbjct: 131 GQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 52/213 (24%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +F    F   +  TI   ++ K V++  ++  L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +F  +   Y +   G  LVY IT + +F+++            +D+ + IL + KDT   
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDL------------QDLREQIL-RVKDT--- 106
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                         + ++LV +  +                   ED +VV     K +G+
Sbjct: 107 ------------DDVPMILVGNKCDL------------------EDERVVG----KEQGQ 132
Query: 190 AIAREY-GVRFMETSAKANINIEKAFIELATAI 221
            +AR++    F+E+SAK+ IN+ + F +L   I
Sbjct: 133 NLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 56/215 (26%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +F    F   +  TI   ++ K V++  ++  L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN--IDEHANEDVEKMILGKTKDTA 127
           +F  +   Y +   G  LVY IT + +F N L+ LR   +     EDV  +++G   D  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVKDTEDVPMILVGNKCDL- 120
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
                                                         ED +VV     K +
Sbjct: 121 ----------------------------------------------EDERVVG----KEQ 130
Query: 188 GEAIAREY-GVRFMETSAKANINIEKAFIELATAI 221
           G+ +AR++    F+E+SAK+ IN+ + F +L   I
Sbjct: 131 GQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 65
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 108

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 89
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW   +  H 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 132

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V +  K + L +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 68
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTK 124
            +  +    Y      ++ + + +  S++N+  KW   +  H       +IL  TK
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPS--TPIILVGTK 122

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 107

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +L+GD  VGKT ++  ++ + + T +I T   +F    V + G+ ++LQ+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDE 80
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           F  +    Y      +L + + +  SF N+  KW+  I  H 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC 122

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 115

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 108

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 108

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 112

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 98/213 (46%), Gaps = 52/213 (24%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +F    F   +  TI   ++ K V++  ++  L+I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +F  +   Y +   G  LVY IT + +F+++            +D+ + IL + KDT   
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDL------------QDLREQIL-RVKDT--- 108
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                        D++   L   ++   ED +VV     K +G+
Sbjct: 109 -----------------------------DDVPMILVG-NKCDLEDERVVG----KEQGQ 134
Query: 190 AIAREY-GVRFMETSAKANINIEKAFIELATAI 221
            +AR++    F+E+SAK+ IN+ + F +L   I
Sbjct: 135 NLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V +  K + L +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 69
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
            +  +    Y      ++ + + +  S++N+  KW   +  H 
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC 112

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 64
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 106

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L   S   F   ++ T+  ++ +  V++ G++++L +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKD 125
           +  +    Y  +  +++ + I    S +N+  KW+  +  H  + V  +++G   D
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVD 125

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 109

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 107

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 89/214 (41%), Gaps = 53/214 (24%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K++++G  GVGK+ +  +F  D F   +  T    ++ K V L G+++++ I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTA 127
           E +  I  +Y+R   G + V+ IT  +SF     +   I     +E+V  +++G   D  
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 123
Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
                                                         ED + V+    K+R
Sbjct: 124 ----------------------------------------------EDKRQVSVEEAKNR 137
Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            E    ++ V ++ETSAK   N++K F +L   I
Sbjct: 138 AE----QWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K++++GDS  GKT +L  F+ D F   ++ T+  ++   + ++  ++I+L +WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 88
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKD 125
           +  +    Y  +  +++ +DI+  ++ D++L KW   I E    + + +++G   D
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSD 143

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K++++GDS  GKT +L  F+ D F   ++ T+  ++   + ++  ++I+L +WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 83
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKD 125
           +  +    Y  +  +++ +DI+  ++ D++L KW   I E    + + +++G   D
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSD 138

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K++++GDS  GKT +L  F+ D F   ++ T+  ++   + ++  ++I+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 67
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKD 125
           +  +    Y  +  +++ +DI+  ++ D++L KW   I E    + + +++G   D
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSD 122

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
           E +  +    Y      ++ + + +  SF ++  KW   +  H 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
           E +  +    Y      ++ + + +  SF ++  KW   +  H 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHA 111
           E +  +    Y      ++ + + +  SF ++  KW   +  H 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGK C+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 112

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ + F + ++  +  ++ + TV + G+   L ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 21/122 (17%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 70  RFHTITTSYYRGAMG-------------------IMLVYDITNEKSFDNI-LKWLRNIDE 109
            +  +    Y   +G                    ++ + + +  SF+N+  KW   +  
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 110 HA 111
           H 
Sbjct: 125 HC 126

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +   + ++ T+  ++ + TV + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
            +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 64  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 123
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 124 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 62  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 121
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 122 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 62  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 121
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 122 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 63  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 122
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 123 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHA 111
           +  +    Y      ++ + + +  SF+N+  KW+  I  H 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 RCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ + F + ++ T+  ++ + TV + G+   L ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANE 113
            +  +    Y      ++ + + +  SF+N+  KW+  I  H  +
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 111

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIEL 217
            C          + + +AR YG+ ++ETSAK    +E AF  L
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                   V   + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DT GQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DT GQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAG+E +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+L+GD   GKT +L   + D +  T++ T+  ++    ++ + ++++L +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 71
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKT 123
           +  +    Y  +  ++L +DI+  ++ D+ L KW   I ++       +I  KT
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKT 125

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+L+GD   GKT +L   + D +  T++ T+  ++    ++ + ++++L +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKT 123
           +  +    Y  +  ++L +DI+  ++ D+ L KW   I ++       +I  KT
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKT 141

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+L+GD   GKT +L   + D +  T++ T+  ++    ++ + ++++L +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 70
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKT 123
           +  +    Y  +  ++L +DI+  ++ D+ L KW   I ++       +I  KT
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKT 124

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE    +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAG E +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAG E +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 62  DTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 121
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 122 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 50/208 (24%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +++ + G  GVGK+ ++ RF    F  ++I T+   ++ + +        LQI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +F  +           +LVY IT+ +S + +      I E    DVE             
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE-IKGDVE------------- 108
Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                        ++ IMLV +                 DE  + + Q           E
Sbjct: 109 -------------SIPIMLVGN---------------KCDESPSREVQ-------SSEAE 133
Query: 190 AIAREYGVRFMETSAKANINIEKAFIEL 217
           A+AR +   FMETSAK N N+++ F EL
Sbjct: 134 ALARTWKCAFMETSAKLNHNVKELFQEL 161

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAG E +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAG E +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAG E +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAG E +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 11/100 (11%)
Query: 2  AKKTYDFLF-----KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK 56
          A K +  LF     ++L++G  G GKT VL++       TT I TIG  F ++TV  K  
Sbjct: 5  ASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQYK-- 59
Query: 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS 96
           I   +WD  GQ+R  ++   YYR   G++ V D +N++S
Sbjct: 60 NISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVID-SNDRS 98

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAGQE +  +   Y R   G + V+ I N KSF +I  +   I    + D  P V+   
Sbjct: 75  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGN 134
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          +   +A+ YG+ F+ETSAK    +E AF  L   I
Sbjct: 135 KCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 11/100 (11%)
Query: 2  AKKTYDFLF-----KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK 56
          A K +  LF     ++L++G  G GKT VL++       TT I TIG  F ++TV  K  
Sbjct: 5  ASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQYK-- 59
Query: 57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS 96
           I   +WD  GQ+R  ++   YYR   G++ V D +N++S
Sbjct: 60 NISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVD-SNDRS 98

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAG E +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
           DTAGQE +  +   Y R   G + V+ I N KSF++I  +   I    + +  P V+   
Sbjct: 58  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 117
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                +  V   + + +AR YG+ F+ETSAK    ++ AF  L   I
Sbjct: 118 KSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
           DTAGQE +  +   Y R   G + V+ I N KSF++I  +   I    + +  P V+   
Sbjct: 58  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 117
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                +  V   + + +AR YG+ F+ETSAK    ++ AF  L   I
Sbjct: 118 KSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
           DTA QE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                   V   + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
           DTA QE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116
Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                   V   + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           ++L++G  G GKT VL++       TT I TIG  F ++TV  K   I   +WD  GQ+
Sbjct: 1  MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQYK--NISFTVWDVGGQD 55
Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKS 96
          R  ++   YYR   G++ V D +N++S
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVD-SNDRS 81

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G    GKT +L++       TT I T+G  F ++TV  K   +K  +WD  GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGQD 377
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAG 128
           +   +   YY G  G++ V D  +    D   + L R I++    D   +I    +D   
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437
Query: 129 QERFHTI 135
             + H I
Sbjct: 438 AMKPHEI 444

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVVNSW 182
           DTAG E +  +   Y R   G + V+ I N KSF++I  +   I    + +  P V+   
Sbjct: 75  DTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 134
Query: 183 VC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
            C          + + +AR YG+ F+ETSAK    ++ AF  L   I
Sbjct: 135 KCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW----LRNIDEHANEDPQVVN 180
           DTAGQE F  +   Y R   G ++VY +T++ SF+++ ++    LR  D  +     V N
Sbjct: 72  DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131
Query: 181 SW-------VCKHRGEAIAREYGVRFMETSAK-ANINIEKAFIELATAI 221
                    V + +G+ +A +Y + ++ETSAK   +N++K F +L   I
Sbjct: 132 KVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G    GKT +L++       TT I T+G  F ++TV  K   +K  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGQD 55
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAG 128
           +   +   YY G  G++ V D  +    D   + L R I++    D   +I    +D   
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 129 QERFHTI 135
             + H I
Sbjct: 116 AMKPHEI 122

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G    GKT +L++       TT I T+G  F ++TV  K   +K  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGQD 55
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAG 128
           +   +   YY G  G++ V D  +    D   + L R I++    D   +I    +D   
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 129 QERFHTI 135
             + H I
Sbjct: 116 AMKPHEI 122

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW----LRNIDEHANEDPQVVN 180
           DTAGQE F  +   Y R   G ++VY +T++ SF+++ ++    LR  D  +     V N
Sbjct: 72  DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131
Query: 181 SW-------VCKHRGEAIAREYGVRFMETSAK-ANINIEKAFIELATAI 221
                    V + +G+ +A +Y + ++ETSAK   +N++K F +L   I
Sbjct: 132 KVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW----LRNIDEHANEDPQVVN 180
           DTAGQE F  +   Y R   G ++VY +T++ SF+++ ++    LR  D  +     V N
Sbjct: 72  DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131
Query: 181 SW-------VCKHRGEAIAREYGVRFMETSAK-ANINIEKAFIELATAI 221
                    V + +G+ +A +Y + ++ETSAK   +N++K F +L   I
Sbjct: 132 KVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW----LRNIDEHANEDPQVVN 180
           DTAGQE F  +   Y R   G ++VY +T++ SF+++ ++    LR  D  +     V N
Sbjct: 67  DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 126
Query: 181 SW-------VCKHRGEAIAREYGVRFMETSAK-ANINIEKAFIELATAI 221
                    V + +G+ +A +Y + ++ETSAK   +N++K F +L   I
Sbjct: 127 KVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G    GKT +L++       TT I T+G  F ++TV  K   +K  +WD  GQ+
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGQD 68
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAG 128
           +   +   YY G  G++ V D  +    D   + L R I++    D   +I    +D   
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
Query: 129 QERFHTI 135
             + H I
Sbjct: 129 AMKPHEI 135

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 51/197 (25%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K+ ++G   VGK+ +  +F +  F  ++  TI   F  K + + G++  LQ+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
           +     +Y     G +LVY +T+ KSF+ I                K+I GK  D  G+ 
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVI----------------KVIHGKLLDMVGKV 110
Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
           +            + IMLV    N+K            D H       +   +    G+A
Sbjct: 111 Q------------IPIMLV---GNKK------------DLH-------MERVISYEEGKA 136
Query: 191 IAREYGVRFMETSAKAN 207
           +A  +   F+E+SAK N
Sbjct: 137 LAESWNAAFLESSAKEN 153

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G    GKT +L++       TT I T+G  F ++TV  K   +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGQD 67
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAG 128
           +   +   YY G  G++ V D  +    D   + L R I++    D   +I    +D   
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127
Query: 129 QERFHTI 135
             + H I
Sbjct: 128 AMKPHEI 134

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 51/197 (25%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K+ ++G   VGK+ +  +F +  F  ++  TI   F  K + + G++  LQ+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 61
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
           +     +Y     G +LVY +T+ KSF+ I                K+I GK  D  G+ 
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVI----------------KVIHGKLLDMVGKV 105
Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
           +            + IMLV    N+K            D H       +   +    G+A
Sbjct: 106 Q------------IPIMLV---GNKK------------DLH-------MERVISYEEGKA 131
Query: 191 IAREYGVRFMETSAKAN 207
           +A  +   F+E+SAK N
Sbjct: 132 LAESWNAAFLESSAKEN 148

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K++++G   VGKT +  +F +  F+  +  T+   +  K V L   +  L + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQDE 84
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAGQ 129
           +  +  S+  G  G +LVY +T+  SF  I    + + E H    V  +++G   D + +
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 130 ERFHTI 135
                +
Sbjct: 145 REVQAV 150

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDPQVV---- 179
           DTAGQ+ +  +  S+  G  G +LVY +T+  SF  I    + + E H      VV    
Sbjct: 78  DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137
Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                    V    G+ +A  +G  FME+SA+ N   +  F ++   I
Sbjct: 138 KADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           ++L +G    GKT +L++       TT I T+G  F ++TV  K   +K  +WD  GQ++
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGQDK 56
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAGQ 129
              +   YY G  G++ V D  +    D   + L R I++    D   +I    +D    
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDA 116
Query: 130 ERFHTI 135
            + H I
Sbjct: 117 XKPHEI 122

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 51/197 (25%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K+ ++G   VGK+ +  +F +  F  ++  TI   F  K + + G++  LQ+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
           +     +Y     G +LVY +T+ KSF+ I                K+I GK  D  G+ 
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVI----------------KVIHGKLLDMVGKV 110
Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
           +            + IMLV    N+K            D H       +   +    G+A
Sbjct: 111 Q------------IPIMLV---GNKK------------DLH-------MERVISYEEGKA 136
Query: 191 IAREYGVRFMETSAKAN 207
           +A  +   F+E+SAK N
Sbjct: 137 LAESWNAAFLESSAKEN 153

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
           DTAGQE F  +   Y R   G +LV+ I + +SF+ + K    I    + D  P V+   
Sbjct: 63  DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGN 122
Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                    V +    A    + V + E SAK  +N+++AF +L  A+
Sbjct: 123 KADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            +L L+G    GKT  +   +   FN   I T+G + +  T   KG  + +++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT---KGN-VTIKLWDIGGQP 78
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN-IDEHANEDVEKMILGKTKDTAG 128
           RF ++   Y RG   I+ + D  +++  +     L N +D+   + +  ++LG  +D  G
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN----IDEHANEDPQVVN 180
           DTAG E+F ++   Y +   G +LVY + N++SF +I K +R+    +  +      +V 
Sbjct: 57  DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVG 115
Query: 181 SWV--------CKHRGEAIAREYGVRFMETSAKANINIEKAFIELA 218
           + V            G A+A E+G  FMETSAK+   +++ F E+ 
Sbjct: 116 NKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            +L L+G    GKT  +   +   FN   I T+G + +  T   KG  + +++WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT---KGN-VTIKLWDIGGQP 87
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN-IDEHANEDVEKMILGKTKDTAG 128
           RF ++   Y RG   I+ + D  +++  +     L N +D+   + +  ++LG  +D  G
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 147

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 51/197 (25%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K+ ++G   VGK+ +  +F +  F  +   TI   F  K + + G++  LQ+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 64
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
           +     +Y     G +LVY +T+ KSF+ I                K+I GK  D  G+ 
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVI----------------KVIHGKLLDMVGKV 108
Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
           +            + IMLV    N+K            D H       +   +    G+A
Sbjct: 109 Q------------IPIMLV---GNKK------------DLH-------MERVISYEEGKA 134
Query: 191 IAREYGVRFMETSAKAN 207
           +A  +   F+E+SAK N
Sbjct: 135 LAESWNAAFLESSAKEN 151

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G    GKT +L++       TT I T+G  F ++TV  K   +K  +WD  G +
Sbjct: 4   MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGLD 58
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAG 128
           +   +   YY G  G++ V D  +    D   + L R I++    D   +I    +D   
Sbjct: 59  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 118
Query: 129 QERFHTI 135
             + H I
Sbjct: 119 AMKPHEI 125

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G    GKT +L++       TT I T+G  F ++TV  K   +K  +WD  G +
Sbjct: 3   MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGLD 57
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAG 128
           +   +   YY G  G++ V D  +    D   + L R I++    D   +I    +D   
Sbjct: 58  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 117
Query: 129 QERFHTI 135
             + H I
Sbjct: 118 AMKPHEI 124

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G    GKT +L++       TT I T+G  F ++TV  K   +K  +WD  G +
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTYK--NVKFNVWDVGGLD 68
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAG 128
           +   +   YY G  G++ V D  +    D   + L R I++    D   +I    +D   
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
Query: 129 QERFHTI 135
             + H I
Sbjct: 129 AMKPHEI 135

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL + G +GVGK+ ++ RF    F   +  T+   ++ +   +  + + ++I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQE- 87
Query: 71  FHTIT-TSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
             TI    + R   G +LVYDIT+  SF+ +L  L+NI
Sbjct: 88  -DTIQREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNI 123

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           ++L++G    GKT +L++       TT I TIG  F ++TV+ +   I   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKVKLGEVVTT-IPTIG--FNVETVEFRN--ISFTVWDVGGQDK 73
Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKD 125
              +   YY    G++ V D  + +  D+  + L R I+E   +D   ++    +D
Sbjct: 74  IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQD 129

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Query: 2   AKKTYDFLF-----KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK 56
           A K +  LF     ++L++G  G GKT VL++       TT I TIG  F ++ V     
Sbjct: 5   ASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVECVQYC-- 59
Query: 57  KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS----FDNILKWLRNIDEHAN 112
            I   +WD  GQ+R  ++   YY    G++ V D +N++S       +++ + N DE  N
Sbjct: 60  NISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVD-SNDRSRIGEAREVMQRMLNEDELCN 118

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            +L L+G    GKT  +   +   F+   I T+G + +  T   KG  + ++IWD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT---KGN-VTIKIWDIGGQP 78
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN-IDEHANEDVEKMILGKTKD 125
           RF ++   Y RG   I+ + D  + +  +     L N +D+   + +  ++LG  +D
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 135

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 16/111 (14%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G    GKT +L++       TT I TIG  F ++TV+ K   I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NICFTVWDVGGQD 72
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           R   +   Y++   G++ V D +N++           I E A+E ++KM+L
Sbjct: 73  RIRPLWKHYFQNTQGLIFVVD-SNDRE---------RIQEVADE-LQKMLL 112

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G    GKT +L++       TT I TIG  F ++TV+ K   I   +WD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NISFTVWDVGGQD 220
Query: 70  RFHTITTSYYRGAMGIMLVYD 90
           +   +   Y++   G++ V D
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVD 241

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 11  KLLLIGDSGVGKTCVLFRF-----SDDAFNTTFISTIGIDFK---IKTVDLKGKKIKLQI 62
           KL ++G++G GKT +L +      SD    +   +T+GID K   I+  D + + + L +
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQS---ATVGIDVKDWPIQIRDKRKRDLVLNV 58
Query: 63  WDTAGQERFHTITTSYYRGAMGIMLVYDITN-EKSFDNILKWLRNIDEHAN 112
           WD AG+E F++    +       + VYD++  +   D    WL NI   A+
Sbjct: 59  WDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARAS 109

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           ++L++G    GKT +L++       TT I TIG  F ++TV+ K   I   +WD  GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTT-IPTIG--FNVETVEYK--NISFTVWDVGGQD 72
Query: 70 RFHTITTSYYRGAMGIMLVYD 90
          +   +   YY+    I+ V D
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVD 93

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 11  KLLLIGDSGVGKTCVLFRF-----SDDAFNTTFISTIGIDFK---IKTVDLKGKKIKLQI 62
           KL ++G++G GKT +L +      SD    +   +T+GID K   I+  D + + + L +
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQS---ATVGIDVKDWPIQIRDKRKRDLVLNV 60
Query: 63  WDTAGQERFHTITTSYYRGAMGIMLVYDITN-EKSFDNILKWLRNIDEHAN 112
           WD AG+E F++    +       + VYD++  +   D    WL NI   A+
Sbjct: 61  WDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARAS 111

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           ++L++G    GKT +L++       TT I TIG  F ++TV+ K   I   +WD  GQ+
Sbjct: 1  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NISFTVWDVGGQD 55
Query: 70 RFHTITTSYYRGAMGIMLVYD 90
          +   +   Y++   G++ V D
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVD 76

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G    GKT +L++       TT I TIG  F ++TV+ K   I   +WD  GQ+
Sbjct: 21  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NISFTVWDVGGQD 75
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED 114
           +   +   Y++   G++ V D +N++  D +++    +    NED
Sbjct: 76  KIRPLWRHYFQNTQGLIFVVD-SNDR--DRVVEARDELHRMLNED 117

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           ++L++G    GKT +L++       TT I TIG  F ++TV+ K   I   +WD  GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NISFTVWDVGGQD 72
Query: 70 RFHTITTSYYRGAMGIMLVYD 90
          +   +   Y++   G++ V D
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVD 93

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           ++L++G    GKT +L++       TT I TIG  F ++TV+ K   I   +WD  GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NISFTVWDVGGQD 71
Query: 70 RFHTITTSYYRGAMGIMLVYD 90
          +   +   Y++   G++ V D
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVD 92

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G  G GKT +L+R       TT   TIG  F ++T  L  K +KL +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG--FNVET--LSYKNLKLNVWDLGGQT 73
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR-NIDEHANEDVEKMILGKTKDTAG 128
                   YY     ++ V D T++       K L   + E   +D   ++    +D  G
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            +LL++G    GKT +L +F+ +  +T    T+G  F IKT++ +G   KL IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
              +   +Y+    G++ V D  + +   +  + L+++
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 111

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            +LL++G    GKT +L +F+ +  +T    T+G  F IKT++ +G   KL IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
              +   +Y+    G++ V D  + +   +  + L+++
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 111

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            +LL++G    GKT +L +F+ +  +T    T+G  F IKT++ +G   KL IWD  GQ+
Sbjct: 17  LRLLMLGLDNAGKTTILKKFNGEDIDT-ISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 71
Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
              +   +Y+    G++ V D  + +   +  + L+++
Sbjct: 72  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 109

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           ++L++G  G GKT +L+R       TT I TIG  F ++TV  K   +K Q+WD  GQ 
Sbjct: 3  MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTYKN--LKFQVWDLGGQT 57
Query: 70 RFHTITTSYYRGAMGIMLVYD 90
                  YY     ++ V D
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVD 78

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G    GKT +L++       TT I TIG  F ++TV+ K   I   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NICFTVWDVGGQD 84
Query: 70  RFHTITTSYYRGAMGIMLVYDITN----EKSFDNILKWLR 105
           +   +   Y++   G++ V D  +    ++S D + K L+
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ 124

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/113 (22%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 11  KLLLIGDSGVGKTCVLFRFSDDA--FNTTFISTIGIDFKIKTVDLKGKKIKLQIW--DTA 66
           K+ ++G++ VGK+ ++  F+     F   +  T G++  +  V +    + ++++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 67  GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMI 119
           G + +    + Y+ G    +LV+D+++ +SF++   W   + + A  D E+ +
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELL-KSARPDRERPL 133

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 11/106 (10%)
Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN---ILKWLRNIDEHANEDPQVVNS 181
           DT G  +F  +           +LV+ +T+++S +    I K +  I     + P ++  
Sbjct: 62  DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121
Query: 182 WVC--------KHRGEAIAREYGVRFMETSAKANINIEKAFIELAT 219
             C            +A+A+E+   FMETSAK N N+++ F EL T
Sbjct: 122 NKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           ++L++G    GKT +L++       TT I TIG  F ++TV+ K   I   +WD  G +
Sbjct: 3  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NISFTVWDVGGLD 57
Query: 70 RFHTITTSYYRGAMGIMLVYD 90
          +   +   Y++   G++ V D
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVD 78

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           + +LL++G    GKT +L +F+ +  +T    T+G  F IKT++ +G   KL IWD  G 
Sbjct: 1   MLRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLG--FNIKTLEHRG--FKLNIWDVGGL 55
Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI 107
           +   +   +Y+    G++ V D  + +   +  + L+++
Sbjct: 56  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 94

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           ++L++G  G GKT +L+R       TT I TIG  F ++TV  K   +K Q+WD  G  
Sbjct: 5  MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTYK--NLKFQVWDLGGLT 59
Query: 70 RFHTITTSYYRGAMGIMLVYD 90
                  YY     ++ V D
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVD 80

>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco) Length = 535

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 19/148 (12%)
Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV-DLKG-------KKIKLQ 61
            K+ LIGD   GKT +L +   + F+     T G++   K   ++KG       K+    
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
            WD  GQE  H     +   +   ML+ D    ++  N   WLR+I+++  +    +++ 
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLD---SRTDSNKHYWLRHIEKYGGKSPVIVVMN 158
Query: 122 KTKDTAG--------QERFHTITTSYYR 141
           K  +            ERF  I   ++R
Sbjct: 159 KIDENPSYNIEQKKINERFPAIENRFHR 186

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
          ++L++G  G GKT +L+R       TT I TIG  F ++TV  K   +K Q+WD  G   
Sbjct: 9  RILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTYK--NLKFQVWDLGGLTS 63
Query: 71 FHTITTSYYRGAMGIMLVYD 90
                 YY     ++ V D
Sbjct: 64 IRPYWRCYYSNTDAVIYVVD 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-98
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	8e-97
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-94
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-94
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	3e-93
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	5e-93
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	4e-92
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	6e-92
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	7e-92
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-91
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-90
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	2e-90
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	3e-90
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	5e-88
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	6e-88
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-87
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-84
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-84
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-83
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	8e-51
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	4e-83
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	6e-83
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	5e-52
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-82
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	7e-51
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	9e-82
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-50
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-81
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-48
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	3e-81
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	9e-50
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	3e-81
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	6e-50
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	6e-81
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	4e-50
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	2e-80
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	7e-51
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	6e-80
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	7e-51
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	6e-80
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	4e-49
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-79
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	6e-48
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-79
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	3e-44
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	3e-79
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	3e-48
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	4e-79
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-47
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	5e-79
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-77
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-49
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	2e-77
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	7e-48
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	3e-75
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	4e-46
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	5e-74
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	5e-46
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	5e-74
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	4e-42
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-73
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-45
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-72
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-70
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-68
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	6e-43
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	7e-62
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-60
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-59
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	9e-59
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	8e-57
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	4e-38
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-56
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-56
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	1e-37
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	8e-56
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	4e-36
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	9e-56
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	4e-54
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	6e-38
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-53
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	4e-53
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-37
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	6e-53
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	3e-36
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	7e-53
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	5e-37
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	8e-53
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-36
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-52
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-52
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	6e-52
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-34
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	7e-52
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	4e-37
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	9e-52
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-51
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-48
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-47
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-46
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	4e-46
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	3e-42
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-41
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	4e-40
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	9e-37
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-36
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-35
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-34
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	4e-34
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	1e-33
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	3e-33
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	9e-33
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-31
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-31
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-31
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	5e-30
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-17
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	7e-16
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	8e-05
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	9e-13
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-12
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	3e-12
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	3e-12
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	3e-12
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	4e-12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	5e-12
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	6e-12
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	6e-12
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	8e-12
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	5e-11
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	2e-10
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	2e-10
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	4e-10
3llu_A	196	RAS-related GTP-binding protein C; structural geno	5e-10
2fh5_B	214	SR-beta, signal recognition particle receptor beta	8e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	9e-10
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	5e-09
2ged_A	193	SR-beta, signal recognition particle receptor beta	3e-08
1nrj_B	218	SR-beta, signal recognition particle receptor beta	3e-07
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	1e-06

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  285 bits (732), Expect = 1e-98
 Identities = 97/254 (38%), Positives = 135/254 (53%), Gaps = 55/254 (21%)

Query: 4   KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
             YD+LFKLLLIG+SGVGK+C+L RFSDD +   +ISTIG+DFKIKTV+L GK +KLQIW
Sbjct: 3   SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 62

Query: 64  DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
           DTAGQERF TIT+SYYRG+ GI++VYD+T+++SF+ +  WL+ ID +A   V K+++G  
Sbjct: 63  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 122

Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
            D                                    LK  R ++              
Sbjct: 123 CD------------------------------------LKDKRVVE-------------- 132

Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS----GRDPLEAPDRVTI 239
                +  A    + F+ETSA  + N+E AF+ +A  I +  S         +  D+  +
Sbjct: 133 -YDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNV 191

Query: 240 DKKPDRGGMAGGCC 253
           + K       GGCC
Sbjct: 192 NLKGQSLTNTGGCC 205

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  280 bits (719), Expect = 8e-97
 Identities = 74/224 (33%), Positives = 110/224 (49%), Gaps = 45/224 (20%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
              +    +K++L GD+ VGK+  L R   + F     +T+G+DF++KT+ + G++  LQ
Sbjct: 21  KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQ 80

Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           +WDTAGQERF +I  SY+R A G++L+YD+T EKSF NI +W+  I++ A+E V  M++G
Sbjct: 81  LWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVG 140

Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
              D                                           D  A E  + V  
Sbjct: 141 NKADIR-----------------------------------------DTAATEGQKCVP- 158

Query: 182 WVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225
               H GE +A  YG  F ETSAK   NI +A + LA  +  +T
Sbjct: 159 ---GHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRT 199

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  275 bits (705), Expect = 1e-94
 Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 52/224 (23%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
           + +  DF  ++++IG  GVGKT ++ RF+DD F     ST+G+DFKIKTV+L+GKKI+LQ
Sbjct: 19  SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 78

Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           IWDTAGQERF++IT++YYR A GI+LVYDIT +++FD++ KW++ ID++A+ED E +++G
Sbjct: 79  IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138

Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
              D                                     +  R I             
Sbjct: 139 NKLD------------------------------------CETDREIT------------ 150

Query: 182 WVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAIYDK 224
              + +GE  A++  G+RF E SAK N N+++ F++L   I  K
Sbjct: 151 ---RQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  274 bits (704), Expect = 2e-94
 Identities = 80/225 (35%), Positives = 120/225 (53%), Gaps = 51/225 (22%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
           + + YDFLFK++LIG++GVGKTC++ RF+   F     +TIG+DF IKTV++ G+K+KLQ
Sbjct: 19  SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQ 78

Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           IWDTAGQERF +IT SYYR A  ++L YDIT E+SF  + +WLR I+++A+  V  +++G
Sbjct: 79  IWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG 138

Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
              D                                    L   R +             
Sbjct: 139 NKID------------------------------------LAERREVS------------ 150

Query: 182 WVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
              + R E  +    + ++ETSAK + N+EK F++LA  +  +  
Sbjct: 151 ---QQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 192

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  272 bits (697), Expect = 3e-93
 Identities = 76/251 (30%), Positives = 118/251 (47%), Gaps = 54/251 (21%)

Query: 5   TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
                FKL+ +G+  VGKT ++ RF  D+F+ T+ +TIGIDF  KT+ L+ + ++LQ+WD
Sbjct: 12  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71

Query: 65  TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG-KT 123
           TAG ERF ++  SY R +   ++VYDITN  SF    KW+ ++      DV  M++G KT
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131

Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
                                      D+ +++                          V
Sbjct: 132 ---------------------------DLADKRQ-------------------------V 139

Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPL-EAPDRVTIDKK 242
               GE  A+E  V F+ETSAKA  N+++ F  +A A+    S +D   E    + ++K 
Sbjct: 140 SIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKP 199

Query: 243 PDRGGMAGGCC 253
            ++    GGC 
Sbjct: 200 QEQPVSEGGCL 210

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  271 bits (694), Expect = 5e-93
 Identities = 82/223 (36%), Positives = 119/223 (53%), Gaps = 51/223 (22%)

Query: 4   KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
               +LFK ++IGD+GVGK+C+L +F+D  F      TIG++F  + V++ GK+IKLQIW
Sbjct: 16  PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIW 75

Query: 64  DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
           DTAGQE F +IT SYYRGA G +LVYDIT  ++F+++  WL +  +H++ ++  M++G  
Sbjct: 76  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNK 135

Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
            D                                    L+  R++               
Sbjct: 136 SD------------------------------------LESRRDVK-------------- 145

Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
            +  GEA ARE+G+ FMETSAK   N+E+AFI  A  IY K  
Sbjct: 146 -REEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQ 187

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  269 bits (689), Expect = 4e-92
 Identities = 73/236 (30%), Positives = 114/236 (48%), Gaps = 53/236 (22%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
                DFLFK L+IG +G GK+C+L +F ++ F      TIG++F  + V++ GK +KLQ
Sbjct: 18  GSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQ 77

Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           IWDTAGQERF ++T SYYRGA G +LVYDIT+ ++++++  WL +    A+ ++  ++ G
Sbjct: 78  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG 137

Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
             KD                                    L   R +             
Sbjct: 138 NKKD------------------------------------LDPEREVT------------ 149

Query: 182 WVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRV 237
                     A+E  + F+ETSA    N+E+AF++ A  I +K    +    P+R+
Sbjct: 150 ---FLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGEL--DPERM 200

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  268 bits (687), Expect = 6e-92
 Identities = 81/246 (32%), Positives = 122/246 (49%), Gaps = 59/246 (23%)

Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFK++LIGDSGVGK+ +L RF+ + FN    STIG++F  +++ + GK IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQER+  IT++YYRGA+G +LVYDI    +++N+ +WL+ + +HA+ ++  M++G   D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121

Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                               L+ LR +                 
Sbjct: 122 ------------------------------------LRHLRAVP---------------T 130

Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS--------GRDPLEAPDRV 237
               A A +  + F+ETSA  + N+E+AF  + T IY   S          D     + V
Sbjct: 131 DEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVV 190

Query: 238 TIDKKP 243
            I   P
Sbjct: 191 DISVPP 196

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  267 bits (685), Expect = 7e-92
 Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 51/221 (23%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
           A   Y ++FK ++IGD GVGK+C+L +F++  F      TIG++F  + +++ G+KIKLQ
Sbjct: 8   APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 67

Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           IWDTAGQERF  +T SYYRGA G ++VYDIT   +++++  WL +     N +   +++G
Sbjct: 68  IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127

Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
              D                                    L+  R++             
Sbjct: 128 NKAD------------------------------------LEAQRDVT------------ 139

Query: 182 WVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
                  +  A E G+ F+E SAK   N+E AF+E A  IY
Sbjct: 140 ---YEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  266 bits (682), Expect = 3e-91
 Identities = 73/223 (32%), Positives = 112/223 (50%), Gaps = 51/223 (22%)

Query: 4   KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
           +TYDFLFK L+IG++G GK+C+L +F +  F      TIG++F  K +++ GK +KLQIW
Sbjct: 5   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64

Query: 64  DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
           DTAGQERF ++T SYYRGA G +LVYDIT+ ++++ +  WL +    A++++  ++ G  
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 124

Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
           KD                                    L   R +               
Sbjct: 125 KD------------------------------------LDADREVT-------------- 134

Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
                   A+E  + F+ETSA    N+E+AF++ A  I +K  
Sbjct: 135 -FLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIE 176

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  263 bits (675), Expect = 2e-90
 Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 51/219 (23%)

Query: 5   TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
           +  + FK++L+G+  VGKT ++ R+ ++ FN   I+T+G  F  K +++ GK++ L IWD
Sbjct: 2   SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61

Query: 65  TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK 124
           TAGQERFH +   YYR + G +LVYDIT+E SF  +  W++ + +    ++   I+G   
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
           D                                    L+  R++                
Sbjct: 122 D------------------------------------LEKERHVS--------------- 130

Query: 185 KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223
               E+ A   G +   TSAK N  IE+ F++L   + +
Sbjct: 131 IQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  264 bits (678), Expect = 2e-90
 Identities = 66/258 (25%), Positives = 109/258 (42%), Gaps = 57/258 (22%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           M  +    L K++++GDSGVGKT ++ ++ +  F+  + +TIG DF  K V +  + + +
Sbjct: 1   MTSR-KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTM 59

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDVE 116
           QIWDTAGQERF ++  ++YRGA   +LV+D+T   +F  +  W       A+    E+  
Sbjct: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP 119

Query: 117 KMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDP 176
            ++LG   D                                                E+ 
Sbjct: 120 FVVLGNKIDL-----------------------------------------------ENR 132

Query: 177 QVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPL-EAPD 235
           QV      K        +  + + ETSAK  IN+E+AF  +A     + +  +   E P+
Sbjct: 133 QVAT----KRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPE 188

Query: 236 RVTIDKKPDRGGMAGGCC 253
            + +DK       A  C 
Sbjct: 189 PIKLDKNERAKASAESCS 206

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  264 bits (678), Expect = 3e-90
 Identities = 76/249 (30%), Positives = 120/249 (48%), Gaps = 63/249 (25%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK----- 56
               YD+L KLL +GDSGVGKT  L+R++D+ FN  FI+T+GIDF+ K V    +     
Sbjct: 18  GSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGS 77

Query: 57  -----KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA 111
                K+ LQ+WDTAGQERF ++TT+++R AMG +L++D+T+++SF N+  W+  +  +A
Sbjct: 78  SGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 137

Query: 112 N-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE 170
             E+ + +++G   D                                    L   R ++E
Sbjct: 138 YCENPDIVLIGNKAD------------------------------------LPDQREVNE 161

Query: 171 HANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS-GRD 229
                           +   +A +YG+ + ETSA    N+EKA   L   I  +     +
Sbjct: 162 ---------------RQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVE 206

Query: 230 PLEAPDRVT 238
             + PD V 
Sbjct: 207 KTQIPDTVN 215

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  258 bits (661), Expect = 5e-88
 Identities = 65/229 (28%), Positives = 96/229 (41%), Gaps = 51/229 (22%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           + + +     K+ L+GD+GVGK+ ++ RF  D F+     TIG  F  KTV    +  K 
Sbjct: 15  VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKF 74

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
            IWDTAGQERFH++   YYRG+   ++VYDIT + SF  + KW++ + EH  E++   I 
Sbjct: 75  LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIA 134

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                                    L  +R +            
Sbjct: 135 GNKCD------------------------------------LSDIREVP----------- 147

Query: 181 SWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD 229
                   +  A   G   +ETSAK  INIE+ F  ++  I       +
Sbjct: 148 ----LKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHEN 192

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  257 bits (660), Expect = 6e-88
 Identities = 62/228 (27%), Positives = 97/228 (42%), Gaps = 51/228 (22%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
           A        KL+L+GD G GK+ ++ RF  D F     STIG  F  +T+ +    +K +
Sbjct: 5   AAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFE 64

Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           IWDTAGQER+H++   YYRGA   ++V+D+TN+ SF+   KW++ +    N ++   + G
Sbjct: 65  IWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAG 124

Query: 122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS 181
              D                                    L   R +             
Sbjct: 125 NKSD------------------------------------LLDARKVT------------ 136

Query: 182 WVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD 229
                  +  A+E G+ FMETSAK   N+++ F E+A  +       +
Sbjct: 137 ---AEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTEN 181

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  257 bits (658), Expect = 3e-87
 Identities = 52/247 (21%), Positives = 89/247 (36%), Gaps = 57/247 (23%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIG-IDFKIKTVDLKGKKIKL 60
           + +  +  +K+ LIGD GVGKT  + R  D  F   + +T+G ++  +  +D +G  IK 
Sbjct: 4   SMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKF 63

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
            +WDTAGQE+   +   YY GA G +L +D+T+  +  N+ +W++        +   ++ 
Sbjct: 64  NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVC 123

Query: 121 G-KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV 179
             K                            DI N +                       
Sbjct: 124 ANKI---------------------------DIKNRQK---------------------- 134

Query: 180 NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAPDR 236
              + K     + +     + E SAK   N    F+ LA     +       +    P  
Sbjct: 135 ---ISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTE 191

Query: 237 VTIDKKP 243
           V  D   
Sbjct: 192 VNYDYHS 198

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  248 bits (637), Expect = 1e-84
 Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 51/213 (23%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+G+S VGK+ ++ RF    F+    STIG  F  +TV L    +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           R+H++   YYRGA   ++VYDITNE+SF     W++ +   A+ ++   + G   D    
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD---- 122

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                           L   R +D                   +
Sbjct: 123 --------------------------------LANKRAVD---------------FQEAQ 135

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIY 222
           + A +  + FMETSAK ++N+ + F+ +A  + 
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  249 bits (639), Expect = 2e-84
 Identities = 56/247 (22%), Positives = 96/247 (38%), Gaps = 59/247 (23%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
            A+      FKL+L+GD G GKT  + R     F   +++T+G++            IK 
Sbjct: 7   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
            +WDTAGQE+F  +   YY  A   ++++D+T+  ++ N+  W R++     E++  ++ 
Sbjct: 67  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLC 125

Query: 121 G-KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV 179
           G K                            DI + K                       
Sbjct: 126 GNKV---------------------------DIKDRKV---------------------- 136

Query: 180 NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR---DPLEAPDR 236
                K +     R+  +++ + SAK+N N EK F+ LA  +    +      P  AP  
Sbjct: 137 -----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPE 191

Query: 237 VTIDKKP 243
           V +D   
Sbjct: 192 VVMDPAL 198

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  247 bits (632), Expect = 1e-83
 Identities = 65/121 (53%), Positives = 92/121 (76%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           +  +  D++FKLLLIG+S VGKT  LFR++DD+F   F+ST+GIDFK+KTV    K+IKL
Sbjct: 14  LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKL 73

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQER+ TITT+YYRGAMG +L+YDI N++SF  +  W   I  ++ ++ + +++
Sbjct: 74  QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV 133

Query: 121 G 121
           G
Sbjct: 134 G 134

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  163 bits (415), Expect = 8e-51
 Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 10/112 (8%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQER+ TITT+YYRGAMG +L+YDI N++SF  +  W   I  ++ ++ QV+     
Sbjct: 77  DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNK 136

Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
                   V    G  +A + G  F E SAK NIN+++ F  L   I +K +
Sbjct: 137 CDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN 188

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  245 bits (628), Expect = 4e-83
 Identities = 67/230 (29%), Positives = 105/230 (45%), Gaps = 57/230 (24%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKK-IK 59
           M+ +    + K++++GDSGVGKT ++ R+ +D ++  + +TIG DF  K V + G K   
Sbjct: 1   MSSR-KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVAT 59

Query: 60  LQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDV 115
           +Q+WDTAGQERF ++  ++YRGA   +LVYD+TN  SF+NI  W      HAN    E  
Sbjct: 60  MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF 119

Query: 116 EKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED 175
             +ILG   D    ++                                            
Sbjct: 120 PFVILGNKIDAEESKKI------------------------------------------- 136

Query: 176 PQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDK 224
                  V +   + +A+  G +    TSAK  IN++ AF E+A +   +
Sbjct: 137 -------VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  246 bits (629), Expect = 6e-83
 Identities = 63/120 (52%), Positives = 92/120 (76%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
               +D++FK+L+IG+S VGKT  LFR++DD+F   F+ST+GIDFK+KT+    K+IKLQ
Sbjct: 1   GSHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQ 60

Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           IWDTAG ER+ TITT+YYRGAMG +L+YDITNE+SF+ +  W   I  ++ ++ + +++G
Sbjct: 61  IWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 120

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  167 bits (424), Expect = 5e-52
 Identities = 50/129 (38%), Positives = 68/129 (52%), Gaps = 10/129 (7%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAG ER+ TITT+YYRGAMG +L+YDITNE+SF+ +  W   I  ++ ++ QV+     
Sbjct: 63  DTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNK 122

Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAP 234
                   V   RG  +A   G  F E SAK NIN+++ F  L   I +K S       P
Sbjct: 123 CDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADP 182

Query: 235 DRVTIDKKP 243
                 + P
Sbjct: 183 AVTGAKQGP 191

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  244 bits (625), Expect = 1e-82
 Identities = 104/121 (85%), Positives = 115/121 (95%), Gaps = 1/121 (0%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MAK TYD+LFKLLLIGDSGVGKTCVLFRFS+DAFN+TFISTIGIDFKI+T++L GK+IKL
Sbjct: 1   MAK-TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKL 59

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERF TITT+YYRGAMGIMLVYDITNEKSFDNI  W+RNI+EHA+ DVEKMIL
Sbjct: 60  QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL 119

Query: 121 G 121
           G
Sbjct: 120 G 120

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  163 bits (415), Expect = 7e-51
 Identities = 69/112 (61%), Positives = 80/112 (71%), Gaps = 10/112 (8%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQERF TITT+YYRGAMGIMLVYDITNEKSFDNI  W+RNI+EHA+ D + +     
Sbjct: 63  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122

Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
                   V K RGE +A +YG++FMETSAKANIN+E AF  LA  I  K  
Sbjct: 123 CDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  243 bits (621), Expect = 9e-82
 Identities = 77/121 (63%), Positives = 104/121 (85%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
              K+YD + K+LLIGDSGVGK+C+L RF +D FN +FI+TIGIDFKIKTVD+ GKK+KL
Sbjct: 12  GNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKL 71

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           Q+WDTAGQERF TITT+YYRGAMGI+LVYD+T+E++F NI +W + ++EHAN++ + +++
Sbjct: 72  QLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLV 131

Query: 121 G 121
           G
Sbjct: 132 G 132

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  163 bits (415), Expect = 2e-50
 Identities = 54/138 (39%), Positives = 82/138 (59%), Gaps = 9/138 (6%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQERF TITT+YYRGAMGI+LVYD+T+E++F NI +W + ++EHAN++ Q++     
Sbjct: 75  DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNK 134

Query: 180 ----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPD 235
                  V   +GEA+A+E G+ F+E+SAK + N+ + F  LA  I +K      +   +
Sbjct: 135 SDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGN 194

Query: 236 RVTIDKKPDRGGMAGGCC 253
               +   + G       
Sbjct: 195 GKEGNISINSGSGNSSKS 212

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  242 bits (620), Expect = 1e-81
 Identities = 62/120 (51%), Positives = 90/120 (75%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
             + YDFLFKL+L+GD+ VGKTCV+ RF   AF+    STIG+DF +KT++++GK++KLQ
Sbjct: 22  PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQ 81

Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           IWDTAGQERF TIT SYYR A G +L YDIT   SF ++  W+ ++ ++A  ++ ++++G
Sbjct: 82  IWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG 141

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  158 bits (401), Expect = 1e-48
 Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 11/114 (9%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQERF TIT SYYR A G +L YDIT   SF ++  W+ ++ ++A  +   +     
Sbjct: 84  DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNK 143

Query: 180 -----NSWVCKHRGEAIAREYGVR-FMETSAKANINIEKAFIELATAIYDKTSG 227
                   V     +++A  Y +   +ETSAK + N+E+AF+ +AT +  +  G
Sbjct: 144 SDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG 197

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  241 bits (617), Expect = 3e-81
 Identities = 76/120 (63%), Positives = 104/120 (86%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
               YD+LFKLLLIGDSGVGK+C+L RF+DD +  ++ISTIG+DFKI+T++L GK IKLQ
Sbjct: 26  MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 85

Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           IWDTAGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G
Sbjct: 86  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 145

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  161 bits (409), Expect = 9e-50
 Identities = 46/110 (41%), Positives = 70/110 (63%), Gaps = 10/110 (9%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+   +     
Sbjct: 88  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 147

Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
                   V     +  A   G+ F+ETSAK   N+E++F+ +A  I  +
Sbjct: 148 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 197

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  240 bits (616), Expect = 3e-81
 Identities = 65/116 (56%), Positives = 92/116 (79%)

Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           +D++FKLL+IG+S VGKT  LFR++DD F   F+ST+GIDFK+KTV    K++KLQIWDT
Sbjct: 20  FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79

Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           AGQER+ TITT+YYRGAMG +L+YDITNE+SF+ +  W   I  ++ ++ + +++G
Sbjct: 80  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG 135

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  161 bits (409), Expect = 6e-50
 Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 10/112 (8%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQER+ TITT+YYRGAMG +L+YDITNE+SF+ +  W   I  ++ ++ QV+     
Sbjct: 78  DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNK 137

Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
                   V   +G+ +A + G  F E SAK NI++ +AF  L  AI DK S
Sbjct: 138 CDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  240 bits (615), Expect = 6e-81
 Identities = 76/120 (63%), Positives = 104/120 (86%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
               YD+LFKLLLIGDSGVGK+C+L RF+DD +  ++ISTIG+DFKI+T++L GK IKLQ
Sbjct: 9   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 68

Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           IWDTAGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+V K+++G
Sbjct: 69  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  162 bits (411), Expect = 4e-50
 Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 10/125 (8%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQERF TIT+SYYRGA GI++VYD+T+++SF+N+ +WL+ ID +A+E+   +     
Sbjct: 71  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 130

Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAP 234
                   V     +  A   G+ F+ETSAK   N+E++F+ +A  I  +          
Sbjct: 131 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGA 190

Query: 235 DRVTI 239
           ++  +
Sbjct: 191 EKSNV 195

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  238 bits (609), Expect = 2e-80
 Identities = 70/117 (59%), Positives = 90/117 (76%), Gaps = 1/117 (0%)

Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWD 64
           YD  FK++L+GDSGVGKTC+L RF D AF   TFIST+GIDF+ K +D+ G K+KLQ+WD
Sbjct: 7   YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66

Query: 65  TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           TAGQERF ++T +YYR A  ++L+YD+TN+ SFDNI  WL  I E+A  DV  M+LG
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLG 123

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  163 bits (415), Expect = 7e-51
 Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 10/112 (8%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQERF ++T +YYR A  ++L+YD+TN+ SFDNI  WL  I E+A  D  ++     
Sbjct: 66  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 125

Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
                   V +  GE +A+EYG+ FMETSAK  +N++ AF  +A  +  ++ 
Sbjct: 126 VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSM 177

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  237 bits (606), Expect = 6e-80
 Identities = 77/115 (66%), Positives = 101/115 (87%)

Query: 7   DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTA 66
           D + K+LLIGDSGVGK+C+L RF +D FN +FI+TIGIDFKIKTVD+ GKK+KLQIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 67  GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           GQERF TITT+YYRGAMGI+LVYDIT+E++F NI +W + ++EHAN++ + +++G
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVG 115

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  163 bits (414), Expect = 7e-51
 Identities = 54/111 (48%), Positives = 77/111 (69%), Gaps = 9/111 (8%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQERF TITT+YYRGAMGI+LVYDIT+E++F NI +W + ++EHAN++ Q++     
Sbjct: 58  DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNK 117

Query: 180 ----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
                  V   +GEA+A+E G+ F+E+SAK + N+ + F  LA  I +K  
Sbjct: 118 SDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 168

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  237 bits (608), Expect = 6e-80
 Identities = 52/120 (43%), Positives = 85/120 (70%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
             + Y+F+FK++LIG+SGVGKT +L RF+ + F+    +TIG++F  +TV L    +K Q
Sbjct: 18  GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQ 77

Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           IWDTAG ER+  IT++YYRGA+G +LV+D+T  +++  + +WL+ + +HA   +  M++G
Sbjct: 78  IWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVG 137

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  159 bits (404), Expect = 4e-49
 Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 10/114 (8%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAG ER+  IT++YYRGA+G +LV+D+T  +++  + +WL+ + +HA     V+     
Sbjct: 80  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNK 139

Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR 228
                   V        A   G+ F+ETSA  + N+E AF  +   I+ K S +
Sbjct: 140 SDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  236 bits (605), Expect = 1e-79
 Identities = 68/121 (56%), Positives = 102/121 (84%), Gaps = 2/121 (1%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MA+  YD LFKLL+IGDSGVGK+ +L RF+D+ F+ ++I+TIG+DFKI+TV++ G+K+KL
Sbjct: 2   MARD-YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKL 60

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
           QIWDTAGQERF TIT++YYRG  G+++VYD+T+ +SF N+ +WL  I+++  +DV ++++
Sbjct: 61  QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILV 119

Query: 121 G 121
           G
Sbjct: 120 G 120

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  155 bits (395), Expect = 6e-48
 Identities = 39/113 (34%), Positives = 63/113 (55%), Gaps = 17/113 (15%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----------- 173
           DTAGQERF TIT++YYRG  G+++VYD+T+ +SF N+ +WL  I+++ +           
Sbjct: 64  DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKN 123

Query: 174 --EDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
              + +VV            A + G++  ETSAK N+N+E+ F  +   +   
Sbjct: 124 DDPERKVVE----TEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRA 172

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  236 bits (605), Expect = 2e-79
 Identities = 48/123 (39%), Positives = 80/123 (65%), Gaps = 2/123 (1%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           + + +   +FK+++IGDS VGKTC+ +RF    F     +TIG+DF+ + VD+ G++IK+
Sbjct: 12  VPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKI 71

Query: 61  QIWDTAGQERFH-TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKM 118
           Q+WDTAGQERF  ++   YYR    ++ VYD+TN  SF ++  W+    +H    D+ ++
Sbjct: 72  QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRI 131

Query: 119 ILG 121
           ++G
Sbjct: 132 LVG 134

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  146 bits (371), Expect = 3e-44
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 15/113 (13%)

Query: 125 DTAGQERFH-TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV---- 179
           DTAGQERF  ++   YYR    ++ VYD+TN  SF ++  W+    +H   +        
Sbjct: 75  DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 134

Query: 180 -------NSWVCKHRGEAIAREYGVRFMETSAKA---NINIEKAFIELATAIY 222
                     V     +  A  + +   ETSAK    N ++E  F+ LA  + 
Sbjct: 135 NKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  235 bits (603), Expect = 3e-79
 Identities = 57/120 (47%), Positives = 88/120 (73%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
               YD+LFK++LIGDSGVGK+ +L RF+ + FN    STIG++F  +++ + GK IK Q
Sbjct: 22  RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 81

Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           IWDTAG ER+  IT++YYRGA+G +LVYDI    +++N+ +WL+ + +HA+ ++  M++G
Sbjct: 82  IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 141

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  156 bits (398), Expect = 3e-48
 Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 10/108 (9%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAG ER+  IT++YYRGA+G +LVYDI    +++N+ +WL+ + +HA+ +  ++     
Sbjct: 84  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 143

Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
                   V      A A + G+ F+ETSA  + N+E AF  + T IY
Sbjct: 144 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  236 bits (605), Expect = 4e-79
 Identities = 59/120 (49%), Positives = 89/120 (74%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
               YD LFK++LIGDSGVGK+ +L RF+ + FN    STIG++F  +T++++GK+IK Q
Sbjct: 6   YGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQ 65

Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           IWDTAGQER+  IT++YYRGA+G ++VYDI+   S++N   WL  + E+A+++V   ++G
Sbjct: 66  IWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIG 125

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  156 bits (396), Expect = 1e-47
 Identities = 51/156 (32%), Positives = 73/156 (46%), Gaps = 27/156 (17%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQER+  IT++YYRGA+G ++VYDI+   S++N   WL  + E+A+++  V      
Sbjct: 68  DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNK 127

Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS-------- 226
                   V     +  A+E  + F ETSA  + N++KAF EL   IY K S        
Sbjct: 128 SDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGD 187

Query: 227 -----GRDPLEAPDRVTIDKKPDRGGMA----GGCC 253
                  +   AP+  TI   P            CC
Sbjct: 188 SSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  235 bits (602), Expect = 5e-79
 Identities = 59/132 (44%), Positives = 92/132 (69%), Gaps = 11/132 (8%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDL------- 53
           M+   YD+L K L +GDSGVGKT VL++++D  FN+ FI+T+GIDF+ K V         
Sbjct: 3   MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62

Query: 54  ---KGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 110
              +G++I LQ+WDTAG ERF ++TT+++R AMG +L++D+TNE+SF N+  W+  +  H
Sbjct: 63  AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 122

Query: 111 A-NEDVEKMILG 121
           A +E+ + ++ G
Sbjct: 123 AYSENPDIVLCG 134

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  232 bits (593), Expect = 1e-77
 Identities = 57/119 (47%), Positives = 82/119 (68%), Gaps = 1/119 (0%)

Query: 4   KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
           +      K+L+IG+SGVGK+ +L RF+DD F+    +TIG+DFK+KT+ + G K KL IW
Sbjct: 10  EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 69

Query: 64  DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE-DVEKMILG 121
           DTAGQERF T+T SYYRGA G++LVYD+T   +F  +  WL  ++ +    D+  M++G
Sbjct: 70  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 128

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  160 bits (407), Expect = 1e-49
 Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 10/125 (8%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQERF T+T SYYRGA G++LVYD+T   +F  +  WL  ++ +   +  V      
Sbjct: 70  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 129

Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAP 234
                N  V ++ G   AR++ + F+E SAK    ++ AF EL   I       +     
Sbjct: 130 KIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQN 189

Query: 235 DRVTI 239
              + 
Sbjct: 190 SGPSS 194

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  230 bits (590), Expect = 2e-77
 Identities = 36/116 (31%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
            +   K++++G+  VGK+ ++ R+    F   +  TIG+DF  + + +  + ++L +WDT
Sbjct: 2   SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61

Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           AGQE F  IT +YYRGA   +LV+  T+ +SF+ I  W   +      D+   ++ 
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQ 116

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  155 bits (394), Expect = 7e-48
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQE F  IT +YYRGA   +LV+  T+ +SF+ I  W   +     + P  +     
Sbjct: 60  DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKI 119

Query: 180 ----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
               +S +     E +A+   +RF  TS K ++N+ + F  LA     K
Sbjct: 120 DLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  225 bits (575), Expect = 3e-75
 Identities = 50/117 (42%), Positives = 75/117 (64%)

Query: 5   TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
                FKL+ +G+  VGKT ++ RF  D+F+ T+ +TIGIDF  KT+ L+ + ++LQ+WD
Sbjct: 10  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69

Query: 65  TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           TAGQERF ++  SY R +   ++VYDITN  SF    KW+ ++      DV  M++G
Sbjct: 70  TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVG 126

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  151 bits (383), Expect = 4e-46
 Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 10/108 (9%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQERF ++  SY R +   ++VYDITN  SF    KW+ ++      D  ++     
Sbjct: 69  DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNK 128

Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
                   V    GE  A+E  V F+ETSAKA  N+++ F  +A A+ 
Sbjct: 129 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  221 bits (567), Expect = 5e-74
 Identities = 45/112 (40%), Positives = 68/112 (60%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K+ L+GD+GVGK+ +++RF +D+F+     TIG  F  KTV  + +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILG 121
           RF  +   YYRG+   ++VYDIT E++F  +  W+R + +H    +   I G
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG 118

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  150 bits (382), Expect = 5e-46
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 10/108 (9%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAG ERF  +   YYRG+   ++VYDIT E++F  +  W+R + +H      V      
Sbjct: 61  DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120

Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
                   V +   +  A      F+ETSAK  INI + FIE++  I 
Sbjct: 121 CDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  222 bits (567), Expect = 5e-74
 Identities = 46/125 (36%), Positives = 76/125 (60%), Gaps = 6/125 (4%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MA      LFK++L+GD GVGK+ ++ R+  + F+T    TIG++F  K +++ G  + +
Sbjct: 1   MAG--KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 58

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDVE 116
           QIWDTAGQERF ++ T +YRG+   +L + + + +SF N+  W +    +A+    E   
Sbjct: 59  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118

Query: 117 KMILG 121
            +ILG
Sbjct: 119 FVILG 123

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  140 bits (356), Expect = 4e-42
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 14/114 (12%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDPQVV---- 179
           DTAGQERF ++ T +YRG+   +L + + + +SF N+  W +    +A+ ++P+      
Sbjct: 62  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 121

Query: 180 --------NSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDK 224
                      V     +A  R+ G   + ETSAK   N+  AF E    +   
Sbjct: 122 LGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  220 bits (564), Expect = 2e-73
 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 5   TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK-KIKLQIW 63
           ++    K++++GD   GKT +   F+ + F   +  TIG+DF ++ + L G   + LQIW
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61

Query: 64  DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE---HANEDVEKMIL 120
           D  GQ     +   Y  GA G++LVYDITN +SF+N+  W   + +    +       ++
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121

Query: 121 G 121
           G
Sbjct: 122 G 122

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  150 bits (380), Expect = 1e-45
 Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 13/117 (11%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE---HANEDPQVV-- 179
           D  GQ     +   Y  GA G++LVYDITN +SF+N+  W   + +    +   P V   
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121

Query: 180 --------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR 228
                      +   +     +E G      SAK   ++   F ++A  I      +
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  217 bits (554), Expect = 3e-72
 Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 48/215 (22%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            KL+L+G++ VGK+ ++ RF  + F      TIG  F  + V +    +K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           RF ++   YYR A   ++VYD+T  +SF     W++ + E A++D+   ++G   D   +
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                +                                                    GE
Sbjct: 124 GGERKVARE------------------------------------------------EGE 135

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
            +A E G+ F ETSAK   N+   F+ +   I  K
Sbjct: 136 KLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  214 bits (546), Expect = 2e-70
 Identities = 56/227 (24%), Positives = 88/227 (38%), Gaps = 31/227 (13%)

Query: 5   TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
                +K +L+G+S VGK+ ++ R + D F+    +TIG  F    V+L    IK    +
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 65  TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK 124
                       +            +      FD    W                     
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFD---IW--------------------- 98

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV----- 179
           DTAGQER+ +I   YYRGA   ++V+DI+N  + D    W+  +   +N    +V     
Sbjct: 99  DTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158

Query: 180 --NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
                V     +  A++  + F++TSAK   NI+  F  LA  IY  
Sbjct: 159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  209 bits (533), Expect = 2e-68
 Identities = 23/124 (18%), Positives = 59/124 (47%), Gaps = 7/124 (5%)

Query: 5   TYDFLFKLLLIGDSGVGKTCVLFRFSDDA--FNTTFISTIGIDFKIKTVDLKGKKIKLQI 62
           T     K+ ++G++ VGK+ ++  F+     F   +  T G++  +  V +    + +++
Sbjct: 16  TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVEL 75

Query: 63  W--DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE---HANEDVEK 117
           +  DTAG + +    + Y+ G    +LV+D+++ +SF++   W   +          +  
Sbjct: 76  FLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRA 135

Query: 118 MILG 121
           +++ 
Sbjct: 136 VLVA 139

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  143 bits (364), Expect = 6e-43
 Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 15/117 (12%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN---- 180
           DTAG + +    + Y+ G    +LV+D+++ +SF++   W   +     +  + +     
Sbjct: 79  DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV 138

Query: 181 ----------SWVCKHRGEAIAREYGVRFMETSAKA-NINIEKAFIELATAIYDKTS 226
                       V     +  A    + F + SA     + +  F+ +AT  Y    
Sbjct: 139 ANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYE 195

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  191 bits (487), Expect = 7e-62
 Identities = 37/226 (16%), Positives = 79/226 (34%), Gaps = 60/226 (26%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTT--FISTIGIDFKIKTVDLKGKK---IKLQIWD 64
            KL+++G++G GKT +L +      +      +T+GID K   + ++ K+   + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 65  TAGQERFHTITTSYYRGAMGIMLVYDITNEKS-FDNILKWLRNIDEHANEDVEKMILGKT 123
            AG+E F++    +       + VYD++  ++  D +  WL NI   A+     +++G T
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVG-T 120

Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
                                      D+++EK                           
Sbjct: 121 H-------------------------LDVSDEKQRKA----------------------C 133

Query: 184 CKHRGEAIAREYGV-----RFMETSAKANINIEKAFIELATAIYDK 224
                + +  + G           + + +  + K    +     + 
Sbjct: 134 MSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  188 bits (479), Expect = 3e-60
 Identities = 39/237 (16%), Positives = 86/237 (36%), Gaps = 64/237 (27%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKK-- 57
           ++ ++ +  ++++LIG+ GVGK+ +   F+    +  +    +G D   +T+ + G+   
Sbjct: 29  ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT 88

Query: 58  -IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDV 115
            I L +W+  G+  +  +     +     ++VY IT+  SF+   +    +      ED+
Sbjct: 89  IILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDI 146

Query: 116 EKMILGKTKDTAGQERFHTITTSYYRGAMGIMLV---YDITNEKSFDNILKWLRNIDEHA 172
                                         I+LV    D+   +                
Sbjct: 147 P-----------------------------IILVGNKSDLVRCRE--------------- 162

Query: 173 NEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRD 229
                     V    G A A  +  +F+ETSA    N+++ F  +   +  +   ++
Sbjct: 163 ----------VSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 209

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  185 bits (471), Expect = 2e-59
 Identities = 42/222 (18%), Positives = 77/222 (34%), Gaps = 61/222 (27%)

Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L++++L+GD GVGKT +   F+           +G D   +T+ + G+   L + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 69  ERFHTITT--SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKD 125
           E+     +  S  +G    ++VY I +  SF++  +    +   H  + V          
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP--------- 113

Query: 126 TAGQERFHTITTSYYRGAMGIMLV---YDITNEKSFDNILKWLRNIDEHANEDPQVVNSW 182
                               I+LV    D+   +                          
Sbjct: 114 --------------------IILVGNKADLARCRE------------------------- 128

Query: 183 VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
           V    G A A  +  +F+ETSA    N+ + F  +   +  +
Sbjct: 129 VSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLR 170

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  183 bits (468), Expect = 9e-59
 Identities = 22/118 (18%), Positives = 55/118 (46%), Gaps = 2/118 (1%)

Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
            D +FK++L+G+SGVGK+ +   F     ++        D   + + +  +++ L ++D 
Sbjct: 20  KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDI 79

Query: 66  AGQERFH-TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
             Q      +     +     ++V+ +T+ +SF  + + L  +     + D+  +++G
Sbjct: 80  WEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 137

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  178 bits (454), Expect = 8e-57
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 3   KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQI 62
                   KL+++G  GVGK+ +  +F    F + +  TI  D   K   + G   +L I
Sbjct: 3   DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDI 61

Query: 63  WDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
            DTAGQE F  +   Y R   G +LV+ I + +SF+ + K    I      +D   +++G
Sbjct: 62  LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  130 bits (329), Expect = 4e-38
 Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDPQVV---- 179
           DTAGQE F  +   Y R   G +LV+ I + +SF+ + K    I      +D  VV    
Sbjct: 63  DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGN 122

Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDP 230
                    V +    A    + V + E SAK  +N+++AF +L  A+        P
Sbjct: 123 KADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQELP 179

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  177 bits (452), Expect = 1e-56
 Identities = 21/115 (18%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           +FK++L+G+SGVGK+ +   F     +         D   + + +  +++ L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 69  ERFH-TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
                 +     +     ++V+ +T+ +SF  + + L  +     + D+  +++G
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 116

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  178 bits (453), Expect = 2e-56
 Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
             +    L K++++G  GVGK+ +  +F  D F   +  T    ++ K V L G+++++ 
Sbjct: 11  GSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQID 69

Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMIL 120
           I DTAGQE +  I  +Y+R   G + V+ IT  +SF     +   I     +E+V  +++
Sbjct: 70  ILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLV 129

Query: 121 G 121
           G
Sbjct: 130 G 130

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  129 bits (327), Expect = 1e-37
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 11/111 (9%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDPQVV---- 179
           DTAGQE +  I  +Y+R   G + V+ IT  +SF     +   I     +E+   +    
Sbjct: 72  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 131

Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
                    V     +  A ++ V ++ETSAK   N++K F +L   I  +
Sbjct: 132 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  176 bits (448), Expect = 8e-56
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
                   +KL+++GD GVGK+ +  +F    F   +  TI  D  +K  ++  +   L 
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILD 69

Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMIL 120
           + DTAGQE F  +   Y R   G ++VY +T++ SF+++ ++ + I      E    +++
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129

Query: 121 G 121
            
Sbjct: 130 A 130

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  125 bits (317), Expect = 4e-36
 Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 12/112 (10%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
           DTAGQE F  +   Y R   G ++VY +T++ SF+++ ++ + I    + +  P ++   
Sbjct: 72  DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131

Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAK-ANINIEKAFIELATAIYDK 224
                    V + +G+ +A +Y + ++ETSAK   +N++K F +L   I  +
Sbjct: 132 KVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  176 bits (449), Expect = 9e-56
 Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
             +    L K++++G  GVGK+ +  +F  D F   +  T    ++ K V L G+++++ 
Sbjct: 7   KGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQID 65

Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMIL 120
           I DTAGQE +  I  +Y+R   G + V+ IT  +SF     +   I     +E+V  +++
Sbjct: 66  ILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLV 125

Query: 121 G 121
           G
Sbjct: 126 G 126

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  171 bits (435), Expect = 4e-54
 Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 2/114 (1%)

Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K++++G  GVGK+ +  +F  D F   +  T    ++ K V L G+++++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62

Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
           E +  I  +Y+R   G + V+ IT  +SF     +   I     +E+V  +++G
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  129 bits (328), Expect = 6e-38
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 11/111 (9%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDPQVV---- 179
           DTAGQE +  I  +Y+R   G + V+ IT  +SF     +   I     +E+   +    
Sbjct: 58  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 117

Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
                    V     +  A ++ V ++ETSAK   N++K F +L   I  +
Sbjct: 118 KSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  171 bits (435), Expect = 1e-53
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
               +++++ G  GVGK+ ++ RF    F  T+I TI   ++ + +        LQI DT
Sbjct: 5   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDT 63

Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE--HANEDVEKMILG 121
            G  +F  +           +LV+ +T+++S + +    + I +   + ED+  M++G
Sbjct: 64  TGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  169 bits (431), Expect = 4e-53
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 2/113 (1%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K++++G   VGKT +  +F +  F+  +  T+   +  K V L   +  L + DTAGQ+
Sbjct: 25  RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQD 83

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
            +  +  S+  G  G +LVY +T+  SF  I    + + E H    V  +++G
Sbjct: 84  EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG 136

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  129 bits (326), Expect = 2e-37
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 11/111 (9%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDPQVV---- 179
           DTAGQ+ +  +  S+  G  G +LVY +T+  SF  I    + + E H      VV    
Sbjct: 78  DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137

Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
                    V    G+ +A  +G  FME+SA+ N   +  F ++   I   
Sbjct: 138 KADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  168 bits (427), Expect = 6e-53
 Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +K++++G  GVGK+ +  +F    F   +  TI  DF  K +++      L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
           +F ++   Y +   G +LVY + N++SF +I      I      E V  +++G
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG 115

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  125 bits (316), Expect = 3e-36
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 11/108 (10%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
           DTAG E+F ++   Y +   G +LVY + N++SF +I      I      +  P ++   
Sbjct: 57  DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116

Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                    V    G A+A E+G  FMETSAK+   +++ F E+   +
Sbjct: 117 KVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  168 bits (427), Expect = 7e-53
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 2/113 (1%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +   + F      TI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILG 121
            +  +   Y R   G + V+ I N KSF++I ++   I    + +DV  +++G
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  127 bits (321), Expect = 5e-37
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 10/107 (9%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
           DTAGQE +  +   Y R   G + V+ I N KSF++I ++   I    + D  P V+   
Sbjct: 57  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116

Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                   V   + + +AR YG+ ++ETSAK    +E AF  L   I
Sbjct: 117 KSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  168 bits (428), Expect = 8e-53
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 2/113 (1%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K+ ++G   VGK+ +  +F +  F  ++  TI   F  K + + G++  LQ+ DTAGQ+
Sbjct: 7   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQD 65

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI-DEHANEDVEKMILG 121
            +     +Y     G +LVY +T+ KSF+ I      + D      +  M++G
Sbjct: 66  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG 118

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  126 bits (319), Expect = 2e-36
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI-DEHANEDPQVV---- 179
           DTAGQ+ +     +Y     G +LVY +T+ KSF+ I      + D        ++    
Sbjct: 60  DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119

Query: 180 ------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                    +    G+A+A  +   F+E+SAK N      F  +    
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  167 bits (426), Expect = 2e-52
 Identities = 35/217 (16%), Positives = 76/217 (35%), Gaps = 58/217 (26%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K+ ++G+   GK+ ++ R+    +     S  G  FK K + + G+   L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRFK-KEIVVDGQSYLLLIRDEGGPP 78

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAG 128
                   +      ++ V+ + +E SF  +  +   +    N  +V  +++G T+D   
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVG-TQD--- 129

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                  I+                     +P+V++      R 
Sbjct: 130 ----------------------AIS-------------------AANPRVID----DSRA 144

Query: 189 EAIAREYG-VRFMETSAKANINIEKAFIELATAIYDK 224
             ++ +     + ET A   +N+E+ F ++A  +   
Sbjct: 145 RKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  167 bits (426), Expect = 2e-52
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +   + F   +  TI   ++ K V + G+   L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILG 121
            +  +   Y R   G + V+ I N KSF +I  +   I    + +DV  +++G
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  165 bits (421), Expect = 6e-52
 Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 2/113 (1%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +F    F   +  TI   ++ K V++  ++  L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
           +F  +   Y +   G  LVY IT + +F+++      I      EDV  +++G
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  120 bits (303), Expect = 3e-34
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 12/109 (11%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDPQVV---- 179
           DTAG E+F  +   Y +   G  LVY IT + +F+++      I      ED  ++    
Sbjct: 57  DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 116

Query: 180 ------NSWVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAI 221
                    V K +G+ +AR++    F+E+SAK+ IN+ + F +L   I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  166 bits (422), Expect = 7e-52
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 2/113 (1%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +   + F   +  TI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
            +  +   Y R   G + V+ I N KSF++I  +   I     +EDV  +++G
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  128 bits (323), Expect = 4e-37
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 19/139 (13%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED--PQVV--- 179
           DTAGQE +  +   Y R   G + V+ I N KSF++I  +   I    + +  P V+   
Sbjct: 58  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 117

Query: 180 -----NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAP 234
                +  V   + + +AR YG+ F+ETSAK    ++ AF  L   I          +  
Sbjct: 118 KCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI---------RKHK 168

Query: 235 DRVTIDKKPDRGGMAGGCC 253
           ++++ D K  +      C 
Sbjct: 169 EKMSKDGKKKKKKSKTKCV 187

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  165 bits (420), Expect = 9e-52
 Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +++ + G  GVGK+ ++ RF    F  ++I T+   ++ + +        LQI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN--EDVEKMILG 121
           +F  +           +LVY IT+ +S + +      I E     E +  M++G
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVG 116

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  164 bits (419), Expect = 1e-51
 Identities = 22/114 (19%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           ++K+LL+G  GVGK+ +   F     +       G  +  +++ + G++  L ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQ 59

Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
           +    +           ++VY +T++ SF+   +    +      +DV  +++G
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG 113

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  157 bits (399), Expect = 1e-48
 Identities = 37/217 (17%), Positives = 74/217 (34%), Gaps = 54/217 (24%)

Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
             +L ++GD+  GK+ ++ RF   ++      T    +K K + + G+   + I + AG 
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYK-KEMLVDGQTHLVLIREEAGA 64

Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
                    +   A  ++ V+ + +E SF  + +    +     E    +          
Sbjct: 65  PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA--------- 110

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                            + LV   T ++           I       P+VV       R 
Sbjct: 111 -----------------LALV--GTQDR-----------ISA---SSPRVVG----DARA 133

Query: 189 EAI-AREYGVRFMETSAKANINIEKAFIELATAIYDK 224
            A+ A      + ET A   +N+++ F E+A  +   
Sbjct: 134 RALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTL 170

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  155 bits (393), Expect = 2e-47
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 5   TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
                 KL + G +GVGK+ ++ RF    F   +  T+   ++     +  + + ++I D
Sbjct: 24  AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILD 82

Query: 65  TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
           TAGQE        + R   G +LVYDIT+  SF+ +L     +DE    ++V  +++G
Sbjct: 83  TAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVG 139

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  152 bits (385), Expect = 2e-46
 Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 7/118 (5%)

Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKK---IKLQIWD 64
            ++++LIG+ GVGK+ +   F+    +  +    +G D   +T+ + G+    I L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65

Query: 65  TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILG 121
             G+  +  +     +     ++VY IT+  SF+   +    +      ED+  +++G
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 121

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  160 bits (406), Expect = 4e-46
 Identities = 40/228 (17%), Positives = 71/228 (31%), Gaps = 63/228 (27%)

Query: 5   TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV--------DLKGK 56
            +    K+ LIGD   GKT +L +   + F+     T G++   K          D + K
Sbjct: 37  VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELK 96

Query: 57  KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE 116
           +     WD  GQE  H     +   +   ML+ D     +  N   WLR+I+++  +   
Sbjct: 97  ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGGKSP- 152

Query: 117 KMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDP 176
            +++   K                                           IDE+ + + 
Sbjct: 153 VIVVM-NK-------------------------------------------IDENPSYN- 167

Query: 177 QVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
                 + + +          RF   S K    +E     L +A+   
Sbjct: 168 ------IEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHP 209

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  141 bits (358), Expect = 3e-42
 Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
             L ++G  G GK+ +  +F    F + +   +   +      +  + + L++ DTA  +
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLD 80

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA---NEDVEKMILG 121
                   Y   A   ++VY + + +SFD+   +L  +  HA      +  ++LG
Sbjct: 81  TPRNCE-RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLG 134

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  139 bits (353), Expect = 2e-41
 Identities = 50/225 (22%), Positives = 89/225 (39%), Gaps = 53/225 (23%)

Query: 2   AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQ 61
             +      K++++GD  VGKTC+L  FS     T ++ T+  +F    +  K ++  L 
Sbjct: 16  KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILH 74

Query: 62  IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMIL 120
           +WDTAGQE +  +    Y  +  ++L + + N  SFDNI  KW   I  +  +  + +++
Sbjct: 75  LWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLV 133

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                                       LR       +D     
Sbjct: 134 GLKVD---------------------------------------LR-------KDGSDD- 146

Query: 181 SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDK 224
             V K  G+ + ++ G V ++E S+ A I + + F +    I+  
Sbjct: 147 --VTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  136 bits (345), Expect = 4e-40
 Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 43/217 (19%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K++L+GD G GKT +L  F+D AF  ++  T+   + +  + +KGK + L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQD 93

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAG 128
            +  +   +Y  A  ++L +D+T+  SFDNI  +W   ++    + V  +++G   D   
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTD--- 149

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                               LR      N+  +     V  HRG
Sbjct: 150 ------------------------------------LRKDKSLVNKLRRNGLEPVTYHRG 173

Query: 189 EAIAREYG-VRFMETSAKANINIEKAFIELATAIYDK 224
           + +AR  G V ++E SA+ + N+   F E A      
Sbjct: 174 QEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  127 bits (320), Expect = 9e-37
 Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 45/214 (21%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K + +GD  VGKTC+L  ++ + F T ++ T+  +F    V + G  + L +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQE 67

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAG 128
            ++ +    YRGA   +L + + ++ S++N+  KW+  +  +A   V  +++G TK    
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVG-TK---- 121

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                 D+ ++K         +   +H    P      +   +G
Sbjct: 122 ---------------------LDLRDDK---------QFFIDHPGAVP------ITTVQG 145

Query: 189 EAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
           E + +  G   ++E S+K+  N++  F      +
Sbjct: 146 EELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  127 bits (321), Expect = 1e-36
 Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 44/211 (20%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L  FS D F   ++ T+  +  I  +++ GK+++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTAGQED 85

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + I +  S +NI  KW   +      +V  +++G  KD    
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKD---- 140

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                              LR  +    E  ++    V    G 
Sbjct: 141 -----------------------------------LRQDEHTRRELAKMKQEPVRSEEGR 165

Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELAT 219
            +A       ++E SAK    + + F E+AT
Sbjct: 166 DMANRISAFGYLECSAKTKEGVREVF-EMAT 195

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  124 bits (314), Expect = 2e-35
 Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 43/216 (19%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+++GD   GKTC+L  FS D F   ++ T+  ++ +  +++ GK+++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y     I++ + + +  S +NI  KW+  +      +V  +++   KD    
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKD---- 140

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                              LR+ +    E  ++    V    G 
Sbjct: 141 -----------------------------------LRSDEHVRTELARMKQEPVRTDDGR 165

Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELATAIYDK 224
           A+A       ++E SAK    + + F     A   K
Sbjct: 166 AMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  122 bits (307), Expect = 1e-34
 Identities = 47/212 (22%), Positives = 88/212 (41%), Gaps = 44/212 (20%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAG 128
            +  +    Y      ++ + + +  SF+N+  KW   +  H   +   +++G   D   
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLD--- 145

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                               LR+  +   +  +   + +   +G
Sbjct: 146 ------------------------------------LRDDKDTIEKLKEKKLTPITYPQG 169

Query: 189 EAIAREYG-VRFMETSAKANINIEKAFIELAT 219
            A+A+E G V+++E SA     ++  F + A 
Sbjct: 170 LAMAKEIGAVKYLECSALTQRGLKTVF-DEAI 200

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  121 bits (305), Expect = 4e-34
 Identities = 58/252 (23%), Positives = 101/252 (40%), Gaps = 59/252 (23%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K + +GD  VGKTC+L  ++ + F T +I T+  D     V + G+ + L +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQE 68

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAG 128
            +  +    YRGA   +L + + ++ S++N+L KW+  +   A  +V  +++G   D   
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLD--- 124

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                               LR+ D+    D   V   +   +G
Sbjct: 125 ------------------------------------LRD-DKGYLADHTNV---ITSTQG 144

Query: 189 EAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDRGG 247
           E + ++ G   ++E S+K   N++  F      +        P    +     K   R G
Sbjct: 145 EELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV------LQPPRRKEVPRRRKNHRRSG 198

Query: 248 ------MAGGCC 253
                 + GGC 
Sbjct: 199 CSIASIVCGGCT 210

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  121 bits (304), Expect = 1e-33
 Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 67/246 (27%)

Query: 16  GDSGVGKTCVLFRF---SDDAFNTTFISTIG-IDFKIKTVD--------------LKGKK 57
           G  G+GK+C+  RF   S D F+    S +   DF  + V+                  +
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 58  IKLQIW-------DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 110
            K+ I        D   Q    T    Y + A    L                       
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASA-------------------- 134

Query: 111 ANEDVEKMILGKTKDTAGQERF--HTITTSYYRGAMGIMLVYDITNE--KSFDNILKWLR 166
                 + ++    D  G E+               G +L  D++    ++FD+ LK++ 
Sbjct: 135 ------EKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVS 188

Query: 167 NIDEHANED--PQVV---------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFI 215
           N+     +   P VV           ++      A++++  ++ +ETSA++N+N++ AF 
Sbjct: 189 NLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKK-NLQVVETSARSNVNVDLAFS 247

Query: 216 ELATAI 221
            L   I
Sbjct: 248 TLVQLI 253

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  119 bits (299), Expect = 3e-33
 Identities = 42/216 (19%), Positives = 89/216 (41%), Gaps = 43/216 (19%)

Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
            +   K++++GDS  GKT +L  F+ D F   ++ T+  ++   + ++  ++I+L +WDT
Sbjct: 25  QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDT 83

Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTK 124
           +G   +  +    Y  +  +++ +DI+  ++ D++L KW   I E    + + +++G   
Sbjct: 84  SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKS 142

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
           D                                       LR       E      + V 
Sbjct: 143 D---------------------------------------LRTDVSTLVELSNHRQTPVS 163

Query: 185 KHRGEAIAREYG-VRFMETSAKANINIEKAFIELAT 219
             +G  +A++ G   ++E SA  + N  +    +AT
Sbjct: 164 YDQGANMAKQIGAATYIECSALQSENSVRDIFHVAT 199

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  117 bits (294), Expect = 9e-33
 Identities = 42/211 (19%), Positives = 88/211 (41%), Gaps = 43/211 (20%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K++++GDS  GKT +L  F+ D F   ++ T+  ++   + ++  ++I+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y  +  +++ +DI+  ++ D++L KW   I E    + + +++G   D    
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSD---- 122

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                              LR       E      + V   +G 
Sbjct: 123 -----------------------------------LRTDVSTLVELSNHRQTPVSYDQGA 147

Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELAT 219
            +A++ G   ++E SA  + N  +    +AT
Sbjct: 148 NMAKQIGAATYIECSALQSENSVRDIFHVAT 178

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  114 bits (288), Expect = 1e-31
 Identities = 47/216 (21%), Positives = 81/216 (37%), Gaps = 43/216 (19%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +L+GD  VGKT ++  ++ + + T +I T   D     V + G+ ++LQ+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           F  +    Y      +L + + +  SF N+  KW+  I  H       +IL  T+     
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKA-PIILVGTQS---- 134

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                D+  +      L           E P      V +   +
Sbjct: 135 ---------------------DLREDVKVLIELD-------KCKEKP------VPEEAAK 160

Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELATAIYDK 224
            +A E     ++E SA    N+++ F     A    
Sbjct: 161 LLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY 196

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  113 bits (285), Expect = 2e-31
 Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 44/211 (20%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +  +    Y      ++ + + +  SF+N+  KW   +  H   +   +++G   D    
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLD---- 120

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                              LR+  +   +  +   + +   +G 
Sbjct: 121 -----------------------------------LRDDKDTIEKLKEKKLTPITYPQGL 145

Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELAT 219
           A+A+E G V+++E SA     ++  F + A 
Sbjct: 146 AMAKEIGAVKYLECSALTQRGLKTVF-DEAI 175

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  113 bits (284), Expect = 2e-31
 Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 43/223 (19%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MA      + K +++GD  VGKTC+L  +++DAF   ++ T+  D    +V + GK+  L
Sbjct: 10  MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 68

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMI 119
            ++DTAGQE +  +    Y      ++ + + N  SF N+  +W+  + E+A  +V   +
Sbjct: 69  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNV-PFL 126

Query: 120 LGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVV 179
           L  T+                          D+ ++      L           E P   
Sbjct: 127 LIGTQ-------------------------IDLRDDPKTLARLN-------DMKEKP--- 151

Query: 180 NSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
              +C  +G+ +A+E G   ++E SA     ++  F E   AI
Sbjct: 152 ---ICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  110 bits (277), Expect = 5e-30
 Identities = 43/220 (19%), Positives = 88/220 (40%), Gaps = 44/220 (20%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            KL+L+GD   GKT +L   + D +  T++ T+  ++    ++ + ++++L +WDT+G  
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSP 86

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILK-WLRNIDEHANEDVEKMILGKTKDTAG 128
            +  +    Y  +  ++L +DI+  ++ D+ LK W   I ++       +++G   D   
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTD--- 142

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                               LR       E      + +   +G
Sbjct: 143 ------------------------------------LRTDLSTLMELSHQKQAPISYEQG 166

Query: 189 EAIAREYG-VRFMETSAK-ANINIEKAFIELATAIYDKTS 226
            AIA++ G   ++E SA  +  +I   F   +    +K S
Sbjct: 167 CAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 80.0 bits (197), Expect = 1e-17
 Identities = 50/212 (23%), Positives = 87/212 (41%), Gaps = 44/212 (20%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAG 128
            +  +    Y      ++ + + +  SF ++  KW   +  H   +   +IL  TK    
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNT-PIILVGTK---- 268

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                 D+ ++K     LK            P      +   +G
Sbjct: 269 ---------------------LDLRDDKDTIEKLK-------EKKLTP------ITYPQG 294

Query: 189 EAIAREYG-VRFMETSAKANINIEKAFIELAT 219
            A+A+E G V+++E SA     ++  F + A 
Sbjct: 295 LAMAKEIGAVKYLECSALTQRGLKTVF-DEAI 325

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 72.9 bits (179), Expect = 7e-16
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 12/120 (10%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSD----------DAFNTTFISTIGIDFKIKTVD-LKGKKI 58
           FK++  G    GKT  L                +  T    T+  DF    +  +KG K 
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 59  KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKM 118
           +  ++   GQ  ++       RG  GI+ V D    +   N  + +RN+ E+  E    +
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANA-ESMRNMRENLAEYGLTL 133

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 14/114 (12%)

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDIT------NEKSFDNILKWLRNIDEHANEDPQV 178
              GQ  ++       RG  GI+ V D        N +S  N+ + L       ++ P V
Sbjct: 80  TVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIV 139

Query: 179 V--------NSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
           +        ++   +     +  E     +E  A     + +   E++  +  +
Sbjct: 140 IQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 63.7 bits (156), Expect = 9e-13
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           ++L++G  G GKT +L+R       TT I TIG  F ++TV  K   +K Q+WD  G  
Sbjct: 8  MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTYKN--LKFQVWDLGGLT 62

Query: 70 RFHTITTSYYRGAMGIMLVYDITNEKSFD 98
                  YY     ++ V D  +     
Sbjct: 63 SIRPYWRCYYSNTDAVIYVVDSCDRDRIG 91

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 63.0 bits (154), Expect = 2e-12
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G  G GKT +L+R       TT   TIG  F ++T+  K   +KL +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVETLSYKN--LKLNVWDLGGQT 73

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFD 98
                   YY     ++ V D T++    
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMS 102

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K++++G    GKT +L++FS +    T   TIG    ++ + +     +  +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVINN--TRFLMWDIGGQE 71

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFD 98
              +   +YY     +++V D T+ +   
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERIS 100

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 62.2 bits (152), Expect = 3e-12
 Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
          ++L++G    GKT +L++       TT I TIG  F ++TV+ K   I   +WD  GQ++
Sbjct: 2  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISFTVWDVGGQDK 56

Query: 71 FHTITTSYYRGAMGIMLVYDITNEKSFD 98
             +   Y++   G++ V D  + +  +
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVN 84

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 5/101 (4%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G    GKT +L++       TT I TIG  F ++TV+ K   I   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ICFTVWDVGGQD 84

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH 110
           +   +   Y++   G++ V D  + +        L+ + + 
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQE 125

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 61.9 bits (151), Expect = 4e-12
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K++++G    GKT +L++FS +    T   TIG    ++ + +     +  +WD  GQE
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVINN--TRFLMWDIGGQE 76

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFD 98
              +   +YY     +++V D T+ +   
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVDSTDRERIS 105

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 61.8 bits (151), Expect = 5e-12
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            +L L+G    GKT  +   +   FN   I T+G  F ++ +      + +++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 78

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFD 98
           RF ++   Y RG   I+ + D  +++  +
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIE 107

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 61.9 bits (151), Expect = 6e-12
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            +LL++G    GKT +L +F+ +  +T    T+G  F IKT++ +G   KL IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFD 98
              +   +Y+    G++ V D  + +   
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQ 102

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 61.4 bits (150), Expect = 6e-12
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++LL+G    GKT +L + + +  +     T G  F IK+V  +G   KL +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQSQG--FKLNVWDIGGQR 71

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFD 98
           +      SY+     ++ V D  + K F+
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRKRFE 100

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 61.5 bits (150), Expect = 8e-12
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G    GKT +L+R       TT + T+G    ++T+  K   I  ++WD  GQ 
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVG--VNLETLQYKN--ISFEVWDLGGQT 77

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFD 98
                   Y+     ++ V D T+     
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDSTDRDRMG 106

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 59.2 bits (144), Expect = 5e-11
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 10  FKLLLIGDSGVGKTCVLFRF-SDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
             +L +G    GKT ++ +    +A +   + TIG  F I+        +   ++D +GQ
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQ 77

Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFD 98
            R+  +   YY+    I+ V D ++     
Sbjct: 78  GRYRNLWEHYYKEGQAIIFVIDSSDRLRMV 107

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+ +G    GKT +L    DD      + T+      + + + G  +    +D  G  +
Sbjct: 27  KLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEELTIAG--MTFTTFDLGGHIQ 81

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFD 98
              +  +Y     GI+ + D  + +   
Sbjct: 82  ARRVWKNYLPAINGIVFLVDCADHERLL 109

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
          KLL +G    GKT +L    +D   T    T       + + +    IK   +D  G  +
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWH--PTSEELAIGN--IKFTTFDLGGHIQ 79

Query: 71 FHTITTSYYRGAMGIMLVYD 90
             +   Y+    GI+ + D
Sbjct: 80 ARRLWKDYFPEVNGIVFLVD 99

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 58.1 bits (140), Expect = 4e-10
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 11/107 (10%)

Query: 11  KLLLIGDSGVGKTCVL-FRFSDDAFN--TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
           KLLL+G SG GK+ +    FS+ +        +TI    +   +   G  + L +WD  G
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID--VEHSHLRFLG-NMTLNLWDCGG 61

Query: 68  QERF-----HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE 109
           Q+ F            ++    ++ V+D+ + +   +I  + + + +
Sbjct: 62  QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQ 108

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 56.5 bits (136), Expect = 5e-10
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 7/106 (6%)

Query: 11  KLLLIGDSGVGKTCVLFR-FSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           ++LL+G    GK+ +    F   + N T             +      +  QIWD  GQ 
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSS-FVNFQIWDFPGQM 80

Query: 70  RFHTIT---TSYYRGAMGIMLVYDITNE--KSFDNILKWLRNIDEH 110
            F   T      +RG   ++ V D  ++  ++   +   +    + 
Sbjct: 81  DFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV 126

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 56.3 bits (136), Expect = 8e-10
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKK-IKLQIWDTAGQE 69
           +L +G    GKT +  R     +  T  ++I          +   +   L + D  G E
Sbjct: 9  AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSIT--DSSAIYKVNNNRGNSLTLIDLPGHE 65

Query: 70 RF-HTITTSYYRGAMGIMLVYD 90
               +   +   A  ++ V D
Sbjct: 66 SLRFQLLDRFKSSARAVVFVVD 87

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 54.9 bits (132), Expect = 5e-09
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
                     ++L++G    GKT +L++       TT I TIG  F ++TV+ K   I  
Sbjct: 157 PRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISF 211

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYD 90
            +WD  GQ++   +   Y++   G++ V D
Sbjct: 212 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
            +++ G    GKT +L   + D+   T + +      +   D  G    + + D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE---PLSAADYDGS--GVTLVDFPGHVK 103

Query: 71  FHTITTSYYRGAM----GIMLVYD 90
                + Y +       G++ + D
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVD 127

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 10/83 (12%)

Query: 12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71
          +++ G    GKT +L   + D+   T + +      +   D  G    + + D  G  + 
Sbjct: 15 IIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE---PLSAADYDGSG--VTLVDFPGHVKL 68

Query: 72 HTITTSYY----RGAMGIMLVYD 90
              + Y     +   G++ + D
Sbjct: 69 RYKLSDYLKTRAKFVKGLIFMVD 91

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 9/106 (8%)

Query: 12  LLLIGDSGVGKTCVL-FRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           +LL+G    GK+ +    F +     T    +               I L + +  GQ  
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTL--YLESTSNPSLEHFST-LIDLAVMELPGQLN 58

Query: 71  FH---TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE 113
           +      +   ++    ++ V D  +E      +  L  I E+A +
Sbjct: 59  YFEPSYDSERLFKSVGALVYVIDSQDEYINA--ITNLAMIIEYAYK 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.98
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.98
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.98
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.98
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.97
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.97
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.97
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.96
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.92
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.93
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.93
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.92
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.92
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.92
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.92
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.91
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.89
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.89
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.88
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.88
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.87
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.87
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.87
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.86
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.86
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.86
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.86
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.85
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.85
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.85
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.85
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.85
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.85
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.84
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.84
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.84
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.84
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.84
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.83
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.83
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.83
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.83
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.83
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.83
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.83
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.83
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.83
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.82
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.82
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.82
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.81
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.81
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.81
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.8
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.8
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.8
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.8
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.8
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.79
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.79
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.79
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.78
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.78
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.78
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.77
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.76
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.76
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.75
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.74
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.74
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.73
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.72
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.72
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.71
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.7
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.7
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.7
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.68
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.67
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.67
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.66
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.65
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.64
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.62
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.61
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.6
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.59
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.58
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.55
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.51
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.49
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.48
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.46
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.46
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.4
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.34
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.32
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.21
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.2
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.2
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.03
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.95
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.85
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.73
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.69
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.69
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.66
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.62
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.61
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.5
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.49
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.47
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.43
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.36
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.34
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.26
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.1
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.03
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.95
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.94
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.88
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.84
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.49
2xxa_A	433	Signal recognition particle protein; protein trans	97.47
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.39
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.37
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.3
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.3
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.23
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.21
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.14
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.13
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.1
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.08
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.0
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.97
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.95
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.94
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.92
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.9
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.89
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.87
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.84
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.83
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.79
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.75
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.75
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.72
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.71
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.7
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.68
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.68
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.67
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.66
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.66
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.65
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.65
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.65
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.65
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.64
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.64
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.61
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.61
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.61
3co5_A	143	Putative two-component system transcriptional RES	96.6
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.6
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.59
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.59
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.56
1g6h_A	257	High-affinity branched-chain amino acid transport	96.56
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.56
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.55
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.55
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.55
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.53
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.52
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.52
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.52
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.51
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.51
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.51
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.51
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.51
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.5
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.49
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.49
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.48
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.47
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.46
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.45
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.45
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.45
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.45
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.43
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.43
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.43
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.42
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.42
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.42
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.42
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.41
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.41
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.4
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.39
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.37
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.37
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.35
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.34
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.34
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.33
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.33
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.33
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.32
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.31
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.3
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.27
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.27
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.27
1via_A	175	Shikimate kinase; structural genomics, transferase	96.26
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.25
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.25
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.25
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.23
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.23
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.21
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.21
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.21
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.21
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.19
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.19
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.19
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.19
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.18
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.16
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.16
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.15
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.15
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.13
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.12
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.12
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.11
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.11
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.1
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.09
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.08
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.08
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.07
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.07
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.06
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.05
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.05
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.05
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.04
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.03
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.03
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.02
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.01
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.99
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.97
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.97
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.97
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.95
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.95
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.94
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.94
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.93
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.93
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.92
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.92
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	95.92
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.9
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.89
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.88
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.88
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.88
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.87
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.87
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.87
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	95.87
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.87
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.86
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.85
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	95.83
3bos_A	242	Putative DNA replication factor; P-loop containing	95.82
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.82
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.81
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.8
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.78
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.77
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.77
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.76
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.76
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.76
2og2_A	359	Putative signal recognition particle receptor; nuc	95.72
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.71
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.71
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.69
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.68
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.63
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.63
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.59
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.59
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.57
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.56
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.54
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.53
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.53
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.53
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.53
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.46
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.46
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.45
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.42
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.37
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.36
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.36
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.33
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.29
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.29
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.28
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.24
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.23
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.23
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.16
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.14
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.14
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.14
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.13
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.13
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.12
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.11
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.1
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.08
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.06
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.05
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.02
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.0
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	94.97
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.94
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.92
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	94.91
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.89
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	94.88
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.87
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	94.84
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	94.82
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	94.82
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	94.81
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.8
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	94.76
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	94.76
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	94.75
2qgz_A	308	Helicase loader, putative primosome component; str	94.75
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.75
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	94.73
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	94.72
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	94.71
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.71
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	94.7
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.7
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	94.7
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	94.68
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	94.66
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.63
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	94.62
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.6
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	94.59
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.56
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.53
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.53
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.51
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	94.5
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.49
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.47
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	94.47
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	94.46
2r44_A	331	Uncharacterized protein; putative ATPase, structur	94.39
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.34
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	94.32
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	94.31
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	94.3
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	94.3
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.29
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	94.28
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.27
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	94.26
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	94.23
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	94.23

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=8.1e-43  Score=274.80  Aligned_cols=195  Identities=39%  Similarity=0.650  Sum_probs=144.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ..+||+|+|++|||||||+++|..+.|...+.||++.++....+.+++..+.+.+|||+|+++|..++..++++++++|+
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il   91 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV   91 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      |||++++++|+.+..|+..+......++|++|||||+|+.                                        
T Consensus        92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~----------------------------------------  131 (216)
T 4dkx_A           92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA----------------------------------------  131 (216)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG----------------------------------------
T ss_pred             EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH----------------------------------------
Confidence            9999999999999999999998887899999999999997                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCC-CCeEeecCCCCCC
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEA-PDRVTIDKKPDRG  246 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  246 (253)
                            ..+.     +..++++++++++++++++|||++|.||+++|..|++.+...+........ ...+.....+++.
T Consensus       132 ------~~r~-----V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (216)
T 4dkx_A          132 ------DKRQ-----VSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQP  200 (216)
T ss_dssp             ------GGCC-----SCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC--------------------------
T ss_pred             ------hcCc-----ccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhhcccccccccccccccCCCCCCC
Confidence                  3343     777889999999999999999999999999999999998765544333222 2233333333333


Q ss_pred             CCCCCCC
Q psy9621         247 GMAGGCC  253 (253)
Q Consensus       247 ~~~~~c~  253 (253)
                      +++++||
T Consensus       201 ~~~~~C~  207 (216)
T 4dkx_A          201 VSEGGCS  207 (216)
T ss_dssp             -------
T ss_pred             CCCCCCc
Confidence            3355554

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=5.4e-36  Score=234.55  Aligned_cols=174  Identities=52%  Similarity=0.896  Sum_probs=155.0

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR   80 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (253)
                      |+. .++..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++
T Consensus         1 M~~-~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   79 (206)
T 2bcg_Y            1 MNS-EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR   79 (206)
T ss_dssp             --C-CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT
T ss_pred             CCc-ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhcc
Confidence            554 4677899999999999999999999999998888899998998888888888899999999999999999999999


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      .+|++|+|||++++.++..+..|+..+......++|+++|+||+|+.                                 
T Consensus        80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~---------------------------------  126 (206)
T 2bcg_Y           80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK---------------------------------  126 (206)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT---------------------------------
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc---------------------------------
Confidence            99999999999999999999999999988776789999999999996                                 


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                   ..+.     +..++..++++.++++++++||++|.|++++|..|.+.+.+...
T Consensus       127 -------------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  174 (206)
T 2bcg_Y          127 -------------DKRV-----VEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS  174 (206)
T ss_dssp             -------------TTCC-----SCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCC
T ss_pred             -------------cccc-----cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence                         2222     45566788888899999999999999999999999999877654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-35  Score=231.28  Aligned_cols=172  Identities=46%  Similarity=0.798  Sum_probs=143.7

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      .+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.|..++..+++.+|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            36679999999999999999999999999888889999888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      |+|||++++.+++.+..|+..+......++|+++|+||+|+.                                      
T Consensus        90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~--------------------------------------  131 (223)
T 3cpj_B           90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA--------------------------------------  131 (223)
T ss_dssp             EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG--------------------------------------
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc--------------------------------------
Confidence            999999999999999999999988766789999999999986                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR  228 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  228 (253)
                              ..+.     +..++..++++.++++++++||++|.|++++|++|.+.+.++....
T Consensus       132 --------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~  181 (223)
T 3cpj_B          132 --------HLRA-----VPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKH  181 (223)
T ss_dssp             --------GGCC-----SCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC---
T ss_pred             --------cccc-----cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhc
Confidence                    2222     4456678888889999999999999999999999999998765543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=2.1e-35  Score=231.08  Aligned_cols=173  Identities=35%  Similarity=0.629  Sum_probs=147.6

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR   80 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (253)
                      |.. ..+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++
T Consensus         1 M~~-~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   79 (207)
T 1vg8_A            1 MTS-RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR   79 (207)
T ss_dssp             -------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGT
T ss_pred             CCc-ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHh
Confidence            544 4567899999999999999999999999988888899998888888888888899999999999999999999999


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcc----cccceeEEeeeeccccccccccccccccccceeeEEEEeccCcc
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEK  156 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (253)
                      .+|++|+|||++++.++..+..|+..+.....    .++|+++|+||+|+.                             
T Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----------------------------  130 (207)
T 1vg8_A           80 GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-----------------------------  130 (207)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-----------------------------
T ss_pred             CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-----------------------------
Confidence            99999999999999999999999999877653    579999999999985                             


Q ss_pred             chhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH-HhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         157 SFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR-EYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                       . +.     ...+...++++ ..+++++++||++|.|++++|++|.+.+.+...
T Consensus       131 -----------------~-~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  178 (207)
T 1vg8_A          131 -----------------N-RQ-----VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET  178 (207)
T ss_dssp             -----------------C-CC-----SCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             -----------------c-cc-----cCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence                             1 11     33455667776 567899999999999999999999999877553

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.1e-34  Score=223.89  Aligned_cols=172  Identities=47%  Similarity=0.822  Sum_probs=154.3

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      ..++..+||+|+|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus        21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (201)
T 2ew1_A           21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN  100 (201)
T ss_dssp             -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence            45677899999999999999999999999998888899999998888888988899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ++|+|||++++.++..+..|+..+......++|+++|+||+|+.                                    
T Consensus       101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~------------------------------------  144 (201)
T 2ew1_A          101 ALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA------------------------------------  144 (201)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG------------------------------------
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc------------------------------------
Confidence            99999999999999999999999988876789999999999986                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                ..+.     +..++.+++++..+++++++||++|.|++++|..|.+.+.++..
T Consensus       145 ----------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~  192 (201)
T 2ew1_A          145 ----------ERRE-----VSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR  192 (201)
T ss_dssp             ----------GGCS-----SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             ----------cccc-----cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence                      2222     44566778888899999999999999999999999999887653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=6.8e-35  Score=223.92  Aligned_cols=174  Identities=76%  Similarity=1.195  Sum_probs=125.3

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR   80 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (253)
                      |++ .+++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++
T Consensus         1 M~~-~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   79 (183)
T 2fu5_C            1 MAK-TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   79 (183)
T ss_dssp             --C-CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTT
T ss_pred             CCc-ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHh
Confidence            443 3577899999999999999999999998888888889988888888888888899999999999999999999999


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      ++|++|+|||++++.+++.+..|+..+..+...++|+++|+||+|+.                                 
T Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~---------------------------------  126 (183)
T 2fu5_C           80 GAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN---------------------------------  126 (183)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC---------------------------------
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC---------------------------------
Confidence            99999999999999999999999999988766789999999999986                                 


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                   ..+.     +..++.+++++.++++++++||++|.|++++|..|.+.+.++..
T Consensus       127 -------------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~  174 (183)
T 2fu5_C          127 -------------DKRQ-----VSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD  174 (183)
T ss_dssp             -------------SCCC-----SCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_pred             -------------ccCc-----CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence                         3222     45567788999999999999999999999999999998877543

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=5.1e-34  Score=224.27  Aligned_cols=202  Identities=25%  Similarity=0.510  Sum_probs=144.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+|+|++|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.|..++..+++++|++|
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            4679999999999999999999999988888888888655 355667888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.+++.+. .|+..+..+. .++|+++|+||+|+..++..                                .
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~--------------------------------~  132 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGY--------------------------------L  132 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHH--------------------------------H
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccc--------------------------------c
Confidence            999999999999997 8999988775 58999999999998622110                                0


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEeecCCCC
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPD  244 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (253)
                      .   .   ...     .+...+..++++.++. +++++||++|.|++++|+.|.+.+.+.....................
T Consensus       133 ~---~---~~~-----~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~  201 (212)
T 2j0v_A          133 A---D---HTN-----VITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGCSI  201 (212)
T ss_dssp             H---T---CSS-----CCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC--------------------
T ss_pred             c---c---ccC-----CCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhhhcccccccccccCCCcEE
Confidence            0   0   000     1456677889999995 99999999999999999999999987655444333222222233444


Q ss_pred             CCCCCCCCC
Q psy9621         245 RGGMAGGCC  253 (253)
Q Consensus       245 ~~~~~~~c~  253 (253)
                      .++-.+|||
T Consensus       202 ~~~~~~~~~  210 (212)
T 2j0v_A          202 ASIVCGGCT  210 (212)
T ss_dssp             ---------
T ss_pred             ehHhhcccc
Confidence            466678888

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=5.1e-34  Score=222.99  Aligned_cols=170  Identities=29%  Similarity=0.526  Sum_probs=147.8

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      +....+||+|+|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            4456799999999999999999999998888888888876553 556778888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|+|||++++.++..+..|+..+..... .++|+++|+||+|+.                                    
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~------------------------------------  132 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE------------------------------------  132 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG------------------------------------
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc------------------------------------
Confidence            9999999999999999999999988753 589999999999986                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                ..+.     +..++..++++.++++++++||++|.|++++|++|.+.+..+..
T Consensus       133 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  180 (206)
T 2bov_A          133 ----------DKRQ-----VSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKM  180 (206)
T ss_dssp             ----------GGCC-----SCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             ----------cccc-----ccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHccc
Confidence                      2222     45567788888999999999999999999999999999877543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=2.2e-33  Score=216.84  Aligned_cols=171  Identities=48%  Similarity=0.854  Sum_probs=153.3

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      ...+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+...+..+.+.+|||||++.+..++..+++.+|
T Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   96 (189)
T 2gf9_A           17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAM   96 (189)
T ss_dssp             TTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCS
T ss_pred             cccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCC
Confidence            45677899999999999999999999999988888889898888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ++|+|||++++.+++.+..|+..+......++|+++|+||+|+.                                    
T Consensus        97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------------------------------------  140 (189)
T 2gf9_A           97 GFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE------------------------------------  140 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG------------------------------------
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc------------------------------------
Confidence            99999999999999999999999988766789999999999986                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                ..+.     +..++.+++++.++++++++||++|.|++++|++|.+.+.++.
T Consensus       141 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~  187 (189)
T 2gf9_A          141 ----------DERV-----VPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM  187 (189)
T ss_dssp             ----------GGCC-----SCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             ----------cccC-----CCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence                      2222     4456778899999999999999999999999999999987754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=1.2e-33  Score=218.69  Aligned_cols=173  Identities=47%  Similarity=0.844  Sum_probs=150.5

Q ss_pred             ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCc
Q psy9621           3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGA   82 (253)
Q Consensus         3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   82 (253)
                      ....++.+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus        15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   94 (191)
T 2a5j_A           15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA   94 (191)
T ss_dssp             CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence            34567789999999999999999999999998888888888888888888888889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          83 MGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      |++|+|||++++.+++.+..|+..+......++|+++|+||+|+.                                   
T Consensus        95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-----------------------------------  139 (191)
T 2a5j_A           95 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE-----------------------------------  139 (191)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----------------------------------
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC-----------------------------------
Confidence            999999999999999999999999988766789999999999986                                   


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                 ..+.     +..++.+++++.++++++++||++|.|++++|+.|.+.+.++..
T Consensus       140 -----------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  187 (191)
T 2a5j_A          140 -----------SRRD-----VKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQ  187 (191)
T ss_dssp             -----------GGCC-----SCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             -----------Cccc-----cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                       2222     45567788899999999999999999999999999999877543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=6.4e-34  Score=222.10  Aligned_cols=171  Identities=46%  Similarity=0.814  Sum_probs=143.9

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      ...+..+||+|+|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus        24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  103 (201)
T 2hup_A           24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN  103 (201)
T ss_dssp             --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence            35577899999999999999999999999888888889888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ++|+|||++++.+++.+..|+..+......++|+++|+||+|+.                                    
T Consensus       104 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~------------------------------------  147 (201)
T 2hup_A          104 GAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS------------------------------------  147 (201)
T ss_dssp             EEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG------------------------------------
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc------------------------------------
Confidence            99999999999999999999999988776789999999999996                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                ..+.     +..++.+++++.+++ +++++||++|.|++++|++|.+.+.++.
T Consensus       148 ----------~~~~-----v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          148 ----------ELRE-----VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH  195 (201)
T ss_dssp             ----------GGCC-----SCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             ----------cccc-----cCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence                      2222     455677889999998 9999999999999999999999988754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=217.67  Aligned_cols=173  Identities=53%  Similarity=0.950  Sum_probs=155.6

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      ..+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus        12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (196)
T 3tkl_A           12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   91 (196)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence            34678999999999999999999999999988889999989988888899888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      +|+|||++++.+++.+..|+..+......++|+++|+||+|+.                                     
T Consensus        92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~-------------------------------------  134 (196)
T 3tkl_A           92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-------------------------------------  134 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-------------------------------------
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc-------------------------------------
Confidence            9999999999999999999999988877789999999999987                                     


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR  228 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  228 (253)
                               ..+.     +.....+++++.++++++++||++|.|++++|++|.+.+.++....
T Consensus       135 ---------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~  184 (196)
T 3tkl_A          135 ---------TKKV-----VDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG  184 (196)
T ss_dssp             ---------TTCC-----SCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC---
T ss_pred             ---------cccc-----cCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhccc
Confidence                     3333     5556788899999999999999999999999999999998876543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=1.3e-33  Score=217.16  Aligned_cols=173  Identities=42%  Similarity=0.764  Sum_probs=154.5

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      .++..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   85 (186)
T 2bme_A            6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   85 (186)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence            56778999999999999999999999999988888999888888888888888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      +|+|||++++.++..+..|+..+......++|+++|+||+|+.                                     
T Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-------------------------------------  128 (186)
T 2bme_A           86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-------------------------------------  128 (186)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-------------------------------------
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-------------------------------------
Confidence            9999999999999999999999888776789999999999986                                     


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR  228 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  228 (253)
                               ..+.     +...+..++++..+++++++||++|.|++++|+.|.+.+.++....
T Consensus       129 ---------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  178 (186)
T 2bme_A          129 ---------ADRE-----VTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG  178 (186)
T ss_dssp             ---------GGCC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSC
T ss_pred             ---------cccc-----cCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhhc
Confidence                     2222     4456678888899999999999999999999999999988765433

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=2e-33  Score=212.93  Aligned_cols=167  Identities=36%  Similarity=0.716  Sum_probs=143.3

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      .++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            46689999999999999999999999988888889999888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      |+|||++++.++..+..|+..+......++|+++|+||+|+.                                      
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--------------------------------------  124 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE--------------------------------------  124 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG--------------------------------------
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc--------------------------------------
Confidence            999999999999999999999888776789999999999986                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                              ..+.     +..++.+++++.++++++++||++|.|++++|++|.+.+.+
T Consensus       125 --------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          125 --------KERH-----VSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             --------GGCC-----SCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             --------cccc-----cCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence                    2222     44567788899999999999999999999999999998764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=217.78  Aligned_cols=171  Identities=39%  Similarity=0.730  Sum_probs=153.4

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      ..++..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..+++.+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   99 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV   99 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            45677899999999999999999999999988888899998888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ++|+|||++++.++..+..|+..+......++|+++|+||+|+..                                   
T Consensus       100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-----------------------------------  144 (193)
T 2oil_A          100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ-----------------------------------  144 (193)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG-----------------------------------
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc-----------------------------------
Confidence            999999999999999999999999887667899999999999962                                   


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                 .+.     +...+.+.+++.++++++++||++|.|++++|+.|.+.+.++.
T Consensus       145 -----------~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  190 (193)
T 2oil_A          145 -----------ARE-----VPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV  190 (193)
T ss_dssp             -----------GCC-----SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             -----------ccc-----cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence                       222     4456678888889999999999999999999999999887754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.3e-33  Score=213.69  Aligned_cols=170  Identities=46%  Similarity=0.884  Sum_probs=150.3

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      ..+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            56788999999999999999999999998888888999989988888889888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      +|+|||++++.++..+..|+..+.... .++|+++|+||+|+..                                    
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~------------------------------------  127 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPE------------------------------------  127 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGG------------------------------------
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCch------------------------------------
Confidence            999999999999999999999998765 6899999999999862                                    


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                ...     +.......++..++++++++||++|.|++++|++|.+.+.....
T Consensus       128 ----------~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  174 (181)
T 3tw8_B          128 ----------RKV-----VETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKK  174 (181)
T ss_dssp             ----------GCC-----SCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             ----------hcc-----cCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence                      222     45567788999999999999999999999999999998877553

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=4e-33  Score=213.23  Aligned_cols=173  Identities=28%  Similarity=0.469  Sum_probs=150.5

Q ss_pred             ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCc
Q psy9621           3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGA   82 (253)
Q Consensus         3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   82 (253)
                      ..+....+||+|+|++|||||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++++..++..+++.+
T Consensus         3 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   81 (181)
T 2fn4_A            3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAG   81 (181)
T ss_dssp             -CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence            346677899999999999999999999999888888888887766 6677788888999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621          83 MGIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI  161 (253)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      |++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.                                  
T Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----------------------------------  127 (181)
T 2fn4_A           82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE----------------------------------  127 (181)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG----------------------------------
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----------------------------------
Confidence            99999999999999999999999985543 4689999999999986                                  


Q ss_pred             HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621         162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSG  227 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  227 (253)
                                  ..+.     +...+...++..++++++++||++|.|++++|++|.+.+.+....
T Consensus       128 ------------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~  176 (181)
T 2fn4_A          128 ------------SQRQ-----VPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ  176 (181)
T ss_dssp             ------------GGCC-----SCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHTTC
T ss_pred             ------------cccc-----cCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhhcc
Confidence                        2222     445667888888999999999999999999999999999876543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=2.2e-33  Score=214.37  Aligned_cols=169  Identities=41%  Similarity=0.803  Sum_probs=150.9

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      ...+..+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            34667899999999999999999999999988888889888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ++|+|||++++.++..+..|+..+......++|+++|+||+|+.                                    
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~------------------------------------  133 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE------------------------------------  133 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG------------------------------------
T ss_pred             EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc------------------------------------
Confidence            99999999999999999999999988877789999999999986                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                ..+.     +..++.+++++.++++++++||++|.|++++|++|.+.+.+
T Consensus       134 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          134 ----------AQRD-----VTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             ----------GGCC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             ----------cccc-----cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence                      2222     44567788889999999999999999999999999988754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=2.7e-33  Score=218.59  Aligned_cols=172  Identities=48%  Similarity=0.876  Sum_probs=154.4

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      ..+++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..+++.+|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (203)
T 1zbd_A            3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM   82 (203)
T ss_dssp             CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence            45677899999999999999999999999988888899998888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ++|+|||++++.++..+..|+..+......++|+++|+||+|+.                                    
T Consensus        83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------------------------------------  126 (203)
T 1zbd_A           83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME------------------------------------  126 (203)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT------------------------------------
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC------------------------------------
Confidence            99999999999999999999999988766789999999999986                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                ..+.     +..+..+++++.++++++++||++|.|++++|++|.+.+.++..
T Consensus       127 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  174 (203)
T 1zbd_A          127 ----------DERV-----VSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMS  174 (203)
T ss_dssp             ----------TSCC-----SCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred             ----------cccc-----cCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                      3222     45567788999999999999999999999999999998877543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=3.2e-33  Score=213.96  Aligned_cols=170  Identities=35%  Similarity=0.636  Sum_probs=149.9

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      .....+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..+++.+|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            45667999999999999999999999999888888898888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      +|+|||++++.+++.+..|+..+......++|+++|+||+|+.                                     
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-------------------------------------  130 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL-------------------------------------  130 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-------------------------------------
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-------------------------------------
Confidence            9999999999999999999999988876789999999999986                                     


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                               ..+.     +..++.+++++.++++++++||++|.|++++|.+|.+.+....
T Consensus       131 ---------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  177 (181)
T 2efe_B          131 ---------DARK-----VTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQ  177 (181)
T ss_dssp             ---------TTCC-----SCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC---
T ss_pred             ---------cccc-----CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence                     2232     4556778889899999999999999999999999998776543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=3.5e-33  Score=211.42  Aligned_cols=167  Identities=57%  Similarity=1.018  Sum_probs=143.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      +..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus         1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1g16_A            1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII   80 (170)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence            35799999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      +|||++++.++..+..|+..+......++|+++|+||+|+.                                       
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~---------------------------------------  121 (170)
T 1g16_A           81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME---------------------------------------  121 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT---------------------------------------
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC---------------------------------------
Confidence            99999999999999999999988876789999999999984                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                             . +.     +..+..+++++.++++++++||++|.|++++|..|.+.+.++.
T Consensus       122 -------~-~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  167 (170)
T 1g16_A          122 -------T-RV-----VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI  167 (170)
T ss_dssp             -------T-CC-----SCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHTC
T ss_pred             -------c-Cc-----cCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence                   1 11     3445678888899999999999999999999999999987653

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=218.91  Aligned_cols=173  Identities=40%  Similarity=0.733  Sum_probs=143.1

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      .++..+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  100 (200)
T 2o52_A           21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG  100 (200)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence            45778999999999999999999999998888888898888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      +|+|||++++.++..+..|+..+......++|+++|+||+|+..                                    
T Consensus       101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------------------------------  144 (200)
T 2o52_A          101 ALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP------------------------------------  144 (200)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG------------------------------------
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc------------------------------------
Confidence            99999999999999999999999887767899999999999862                                    


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR  228 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  228 (253)
                                .+.     +...+..++++..+++++++||++|.|++++|+.|.+.+..+....
T Consensus       145 ----------~~~-----v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~  193 (200)
T 2o52_A          145 ----------ERE-----VTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSG  193 (200)
T ss_dssp             ----------GCC-----SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTT
T ss_pred             ----------ccc-----cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence                      222     4445678888899999999999999999999999999988765433

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=2.9e-33  Score=216.42  Aligned_cols=174  Identities=41%  Similarity=0.767  Sum_probs=151.2

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeE-EEEEeeCCe---------EEEEEEEeCCCccc
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFK-IKTVDLKGK---------KIKLQIWDTAGQER   70 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~Dt~G~~~   70 (253)
                      |....++..+||+|+|++|||||||+++|.++.+...+.++.+.++. ...+...+.         .+.+.+|||||++.
T Consensus         3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   82 (195)
T 3bc1_A            3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER   82 (195)
T ss_dssp             ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred             CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence            66667888999999999999999999999998888888899988887 556666655         78999999999999


Q ss_pred             ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEE
Q psy9621          71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLV  149 (253)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  149 (253)
                      +..++..+++.+|++|+|||++++.++..+..|+..+..+.. .++|+++|+||+|+..                     
T Consensus        83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~---------------------  141 (195)
T 3bc1_A           83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED---------------------  141 (195)
T ss_dssp             GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG---------------------
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc---------------------
Confidence            999999999999999999999999999999999999988764 6899999999999862                     


Q ss_pred             EeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         150 YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                               .+.     +..+..+++++.++++++++||++|.|++++|+.|.+.+.++.
T Consensus       142 -------------------------~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  187 (195)
T 3bc1_A          142 -------------------------QRA-----VKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRM  187 (195)
T ss_dssp             -------------------------GCC-----SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             -------------------------ccc-----cCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence                                     222     4456678888899999999999999999999999999887654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.8e-34  Score=222.28  Aligned_cols=172  Identities=50%  Similarity=0.883  Sum_probs=154.9

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      ..++..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..+++.+|
T Consensus        18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   97 (191)
T 3dz8_A           18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM   97 (191)
T ss_dssp             TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred             cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence            35678899999999999999999999999888888888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ++|+|||++++.+++.+..|+..+......++|+++|+||+|+.                                    
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------------------------------------  141 (191)
T 3dz8_A           98 GFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME------------------------------------  141 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG------------------------------------
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc------------------------------------
Confidence            99999999999999999999999988776789999999999986                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                ..+.     +..++.+.+++.++++++++||++|.|++++|+.|.+.+.++..
T Consensus       142 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  189 (191)
T 3dz8_A          142 ----------EERV-----VPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS  189 (191)
T ss_dssp             ----------GGCC-----SCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred             ----------cccc-----cCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence                      2222     55567888999999999999999999999999999999987653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=4e-33  Score=211.01  Aligned_cols=165  Identities=38%  Similarity=0.660  Sum_probs=148.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..+++.+|++|
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            45799999999999999999999999888888899998888888888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      +|||++++.++..+..|+..+......++|+++|+||+|+..                                      
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~--------------------------------------  125 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN--------------------------------------  125 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG--------------------------------------
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc--------------------------------------
Confidence            999999999999999999999887667899999999999862                                      


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                              .+.     +..++..++++..+++++++||++|.|++++|++|.+.+.
T Consensus       126 --------~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          126 --------KRA-----VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             --------GCC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             --------ccc-----cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence                    222     4455677888889999999999999999999999987653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=4.1e-33  Score=210.94  Aligned_cols=167  Identities=34%  Similarity=0.647  Sum_probs=148.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      +.+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            36899999999999999999999998888888999988888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      |||++++.++..+..|+..+......++|+++++||+|+.....                                    
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------------------------------------  125 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGG------------------------------------  125 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSC------------------------------------
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccc------------------------------------
Confidence            99999999999999999999888767899999999999862210                                    


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                             .+.     +..+..+++++.++++++++||++|.|++++|++|.+.+.
T Consensus       126 -------~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  168 (170)
T 1ek0_A          126 -------ERK-----VAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             -------CCC-----SCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred             -------ccC-----CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence                   022     5556778888999999999999999999999999987654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.1e-33  Score=216.66  Aligned_cols=171  Identities=49%  Similarity=0.898  Sum_probs=144.1

Q ss_pred             ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCc
Q psy9621           3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGA   82 (253)
Q Consensus         3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   82 (253)
                      ..+.+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+
T Consensus        20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (192)
T 2il1_A           20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA   99 (192)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence            35677889999999999999999999999988888889999898888888888889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          83 MGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      |++|+|||++++.+++.+..|+..+......++|+++|+||+|+..                                  
T Consensus       100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~----------------------------------  145 (192)
T 2il1_A          100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET----------------------------------  145 (192)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG----------------------------------
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc----------------------------------
Confidence            9999999999999999999999999887767899999999999862                                  


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHHh-CCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                  .+.     +..++.+++++.+ +++++++||++|.|++++|+.|.+.+.++
T Consensus       146 ------------~~~-----v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~  191 (192)
T 2il1_A          146 ------------DRE-----ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK  191 (192)
T ss_dssp             ------------GCC-----SCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             ------------ccc-----cCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence                        222     4445677788775 78999999999999999999999988754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=7.3e-33  Score=209.68  Aligned_cols=166  Identities=37%  Similarity=0.648  Sum_probs=149.5

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      +.+.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+.+....+.+|||||++.+..++..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            35679999999999999999999999998888889999888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      |+|||++++.++..+..|+..+.......+|+++|+||+|+.                                      
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~--------------------------------------  124 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT--------------------------------------  124 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG--------------------------------------
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc--------------------------------------
Confidence            999999999999999999999988766889999999999986                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                              ..+.     +..++...+++.++++++++||++|.|++++|+.|.+.+.
T Consensus       125 --------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          125 --------DVRE-----VMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP  168 (170)
T ss_dssp             --------GGCC-----SCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             --------cccc-----cCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence                    2222     4456678888889999999999999999999999988764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=6.7e-33  Score=209.48  Aligned_cols=166  Identities=30%  Similarity=0.614  Sum_probs=148.6

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      .+..+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++....+.+|||||++.+..++..+++.+|++
T Consensus         2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            35689999999999999999999999988888889999888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      |+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.                                      
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~--------------------------------------  122 (168)
T 1z2a_A           82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLL--------------------------------------  122 (168)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGG--------------------------------------
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccC--------------------------------------
Confidence            99999999999999999999988776 789999999999986                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                              ..+.     +..++.+++++.++++++++||++|.|++++|+.|.+.+.+
T Consensus       123 --------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          123 --------DDSC-----IKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             --------GGCS-----SCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             --------cccc-----cCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence                    2222     44566788889999999999999999999999999988764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-32  Score=210.87  Aligned_cols=170  Identities=53%  Similarity=0.928  Sum_probs=142.5

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      .++..+||+|+|++|||||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            4567899999999999999999999988875 466788888888777788888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ++|+|||++++.++..+..|+..+......++|+++|+||+|+.                                    
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------------------------------------  129 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA------------------------------------  129 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT------------------------------------
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC------------------------------------
Confidence            99999999999999999999999988776789999999999997                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                ..+.     +..++.+++++.++++++++||++|.|++++|++|.+.+.++.
T Consensus       130 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          130 ----------HERV-----VKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRS  176 (180)
T ss_dssp             ----------SCCC-----SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC--
T ss_pred             ----------cccc-----cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence                      2222     4556678888899999999999999999999999999887654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.7e-33  Score=215.58  Aligned_cols=169  Identities=38%  Similarity=0.613  Sum_probs=149.5

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      ..++..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+.+....+.+|||||++.+..++..+++.+|
T Consensus        18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   97 (192)
T 2fg5_A           18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA   97 (192)
T ss_dssp             ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred             cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence            34577899999999999999999999999888888899999988888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ++|+|||++++.++..+..|+..+......++|+++|+||+|+.                                    
T Consensus        98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~------------------------------------  141 (192)
T 2fg5_A           98 AAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS------------------------------------  141 (192)
T ss_dssp             EEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG------------------------------------
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc------------------------------------
Confidence            99999999999999999999999988776789999999999986                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                ..+.     +..++.+++++.++++++++||++|.|++++|+.|.+.+.+
T Consensus       142 ----------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          142 ----------DIRE-----VPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP  186 (192)
T ss_dssp             ----------GGCC-----SCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred             ----------cccc-----cCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence                      2222     44567788888999999999999999999999999887644

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=1e-32  Score=211.32  Aligned_cols=168  Identities=26%  Similarity=0.409  Sum_probs=148.7

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      ....+||+|+|++|||||||+++|..+.+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            44689999999999999999999998888888889988777 56777888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      |+|||++++.+++.+..|+..+..... .++|+++|+||+|+.                                     
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-------------------------------------  124 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH-------------------------------------  124 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT-------------------------------------
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch-------------------------------------
Confidence            999999999999999999999877653 589999999999986                                     


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                               ..+.     +..++.+++++.++++++++||++|.|++++|+.|.+.+....
T Consensus       125 ---------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  171 (181)
T 3t5g_A          125 ---------MERV-----ISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD  171 (181)
T ss_dssp             ---------TTCC-----SCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred             ---------hcce-----ecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence                     3333     6667889999999999999999999999999999999988755

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=5.9e-33  Score=211.94  Aligned_cols=169  Identities=28%  Similarity=0.467  Sum_probs=147.0

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCC-eEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKG-KKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      ....+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+.+ ..+.+.+|||||++.+..++..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            35679999999999999999999999888877888988888888888876 57899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcc--cccc-eeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHAN--EDVE-KMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI  161 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      +|+|||++++.+++.+..|+..+.....  .+.| +++|+||+|+..                                 
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~---------------------------------  129 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH---------------------------------  129 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG---------------------------------
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc---------------------------------
Confidence            9999999999999999999999877542  2455 899999999862                                 


Q ss_pred             HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                   .+.     +..++..++++.++++++++||++|.|++++|++|.+.+....
T Consensus       130 -------------~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          130 -------------MRT-----IKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK  175 (178)
T ss_dssp             -------------GCS-----SCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred             -------------ccc-----cCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence                         222     4456778888999999999999999999999999999887654

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=6.7e-33  Score=215.37  Aligned_cols=171  Identities=20%  Similarity=0.300  Sum_probs=141.4

Q ss_pred             ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc-cchhhhcC
Q psy9621           3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT-ITTSYYRG   81 (253)
Q Consensus         3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~   81 (253)
                      +.+.+..+||+|+|++|||||||+++|.+......+.++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.
T Consensus        17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   96 (195)
T 3cbq_A           17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT   96 (195)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred             CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence            34567889999999999999999999976544434445556666667778888899999999999988765 77888999


Q ss_pred             ccEEEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          82 AMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      +|++|+|||++++.+|..+..|+..+..... .++|+++|+||+|+.                                 
T Consensus        97 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~---------------------------------  143 (195)
T 3cbq_A           97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA---------------------------------  143 (195)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT---------------------------------
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc---------------------------------
Confidence            9999999999999999999999999887653 589999999999996                                 


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                   ..+.     +..++++++++.++++++++||++|.|++++|+.|++.+...
T Consensus       144 -------------~~~~-----v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          144 -------------RSRE-----VSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR  189 (195)
T ss_dssp             -------------TTCC-----SCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred             -------------ccCC-----cCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence                         3232     455677889999999999999999999999999999988653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=3.7e-33  Score=217.34  Aligned_cols=175  Identities=40%  Similarity=0.671  Sum_probs=138.4

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      ...+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus        23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  102 (199)
T 2p5s_A           23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD  102 (199)
T ss_dssp             -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred             cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence            35567899999999999999999999999888888889888888888888988899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ++|+|||++++.++..+..|+..+......++|+++|+||+|+......                               
T Consensus       103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~-------------------------------  151 (199)
T 2p5s_A          103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAAT-------------------------------  151 (199)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHH-------------------------------
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccccc-------------------------------
Confidence            9999999999999999999999998876678999999999998621100                               


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                               ...+.     +..++.+++++.++++++++||++|.|++++|.+|.+.+.+
T Consensus       152 ---------~~~~~-----v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          152 ---------EGQKC-----VPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             ---------TTCCC-----CCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred             ---------ccccc-----cCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence                     01122     55667788999999999999999999999999999998864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.1e-33  Score=216.65  Aligned_cols=167  Identities=28%  Similarity=0.466  Sum_probs=143.2

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      ....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            456799999999999999999999998888777888875554 4456777888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      |+|||++++.+++.+..|+..+.....  .++|+++|+||+|+.                                    
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~------------------------------------  127 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET------------------------------------  127 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS------------------------------------
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC------------------------------------
Confidence            999999999999999988888776543  479999999999986                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                . +.     +...+...+++.++++++++||++|.|++++|++|.+.+..+.
T Consensus       128 ----------~-~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  173 (199)
T 2gf0_A          128 ----------Q-RE-----VDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRN  173 (199)
T ss_dssp             ----------S-CS-----SCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred             ----------c-cc-----cCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhhhh
Confidence                      2 11     4445677888889999999999999999999999998876544

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=212.43  Aligned_cols=165  Identities=23%  Similarity=0.388  Sum_probs=140.9

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      ....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+|||+|++.+..+ ..+++.+|++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            456799999999999999999999999988888899887663 55677888899999999999988875 6799999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcc---cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHAN---EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      |+|||++++.+++.+..|+..+.....   .++|+++|+||+|+.                                   
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~-----------------------------------  140 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA-----------------------------------  140 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG-----------------------------------
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh-----------------------------------
Confidence            999999999999999999999987743   589999999999986                                   


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeec-cCCCCHHHHHHHHHHHHHh
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSA-KANINIEKAFIELATAIYD  223 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~gi~~l~~~l~~~~~~  223 (253)
                                 ..+.     +..+++.++++.++++++++|| ++|.|++++|+.|.+.+.+
T Consensus       141 -----------~~~~-----v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          141 -----------QYRQ-----VTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             -----------GGCS-----SCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred             -----------hcCc-----cCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence                       2222     5566788999999999999999 8999999999999988754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=2.5e-32  Score=209.54  Aligned_cols=167  Identities=28%  Similarity=0.517  Sum_probs=149.1

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      +..+.+||+|+|++|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   92 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG   92 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            355689999999999999999999999988888888888777 5667788888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.                                    
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~------------------------------------  136 (183)
T 3kkq_A           93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM------------------------------------  136 (183)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS------------------------------------
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch------------------------------------
Confidence            999999999999999999999987753 4689999999999986                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeecc-CCCCHHHHHHHHHHHHHh
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAK-ANINIEKAFIELATAIYD  223 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~gi~~l~~~l~~~~~~  223 (253)
                                ..+.     +..++.+++++.++++++++||+ +|.|++++|+.|.+.+.+
T Consensus       137 ----------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          137 ----------HLRK-----VTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             ----------TTCC-----SCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             ----------hccC-----cCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence                      3333     66677899999999999999999 999999999999998765

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=8.2e-33  Score=217.93  Aligned_cols=182  Identities=21%  Similarity=0.445  Sum_probs=146.4

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      .+....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+|||+|++.|..++..+++++|
T Consensus        22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  100 (214)
T 3q3j_B           22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD  100 (214)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence            34566899999999999999999999999999888999987764 56677788899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHH-HHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          84 GIMLVYDITNEKSFDN-ILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      ++|+|||++++.++.. +..|+..+.... .++|+++|+||+|+.....                            ...
T Consensus       101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~----------------------------~~~  151 (214)
T 3q3j_B          101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLS----------------------------TLM  151 (214)
T ss_dssp             EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHH----------------------------HHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchh----------------------------hhh
Confidence            9999999999999999 689999998876 6899999999999972110                            000


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCC-HHHHHHHHHHHHHhccC
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANIN-IEKAFIELATAIYDKTS  226 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g-i~~l~~~l~~~~~~~~~  226 (253)
                          .+...  ..+.     +..+++.++++.+++ ++++|||++|.| |+++|+.|.+.+..+..
T Consensus       152 ----~~~~~--~~~~-----v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          152 ----ELSHQ--KQAP-----ISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             ----HHHHT--TCCC-----CCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             ----hhccc--ccCc-----cCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence                00000  1122     667788999999998 999999999998 99999999999887654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=1.5e-32  Score=209.61  Aligned_cols=165  Identities=42%  Similarity=0.708  Sum_probs=147.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   92 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV   92 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            45899999999999999999999988888888999988888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      |||++++.++..+..|+..+......++|+++|+||+|+.                                        
T Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----------------------------------------  132 (179)
T 2y8e_A           93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS----------------------------------------  132 (179)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG----------------------------------------
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc----------------------------------------
Confidence            9999999999999999999988776789999999999986                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                            ..+.     +...+.+.+++.++++++++||++|.|++++|+.|.+.+..
T Consensus       133 ------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          133 ------DKRQ-----VSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             ------GGCC-----SCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred             ------ccCc-----CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence                  2222     44566778888899999999999999999999999886644

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=2.5e-32  Score=210.37  Aligned_cols=165  Identities=32%  Similarity=0.545  Sum_probs=142.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ..+||+|+|++|||||||+++|.++.+...+.++.+ +.....+.+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            578999999999999999999999888888777775 4444666778888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |||++++.++..+..|+..+.... ..++|+++|+||+|+.                                       
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~---------------------------------------  122 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP---------------------------------------  122 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS---------------------------------------
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc---------------------------------------
Confidence            999999999999999999988764 3689999999999985                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                             . ..     ...+....+++.++++++++||++|.|++++|++|.+.+....
T Consensus       123 -------~-~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  168 (189)
T 4dsu_A          123 -------S-RT-----VDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK  168 (189)
T ss_dssp             -------S-CS-----SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             -------c-cc-----cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence                   1 11     4556778899999999999999999999999999999998765

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.2e-32  Score=211.01  Aligned_cols=182  Identities=27%  Similarity=0.543  Sum_probs=149.8

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR   80 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (253)
                      |+..+....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++
T Consensus        10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   88 (194)
T 2atx_A           10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP   88 (194)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred             cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcC
Confidence            5556667889999999999999999999999988888888887665 355677778899999999999999999999999


Q ss_pred             CccEEEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621          81 GAMGIMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD  159 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (253)
                      .+|++|+|||++++.++..+. .|+..+.... .++|+++|+||+|+.....                            
T Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~----------------------------  139 (194)
T 2atx_A           89 MTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPK----------------------------  139 (194)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHH----------------------------
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccccc----------------------------
Confidence            999999999999999999997 7999988765 5899999999999962210                            


Q ss_pred             hHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         160 NILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                       .   .+.+...  ..+.     +..++..++++.+++ +++++||++|.|++++|++|.+.+..
T Consensus       140 -~---~~~~~~~--~~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          140 -T---LARLNDM--KEKP-----ICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             -H---HHHHTTT--TCCC-----CCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             -c---hhhcccc--cCcc-----cCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence             0   0000000  1112     556778899999997 99999999999999999999988763

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=2.2e-32  Score=208.07  Aligned_cols=168  Identities=24%  Similarity=0.362  Sum_probs=134.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc--ccccchhhhcCccE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER--FHTITTSYYRGAMG   84 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~~d~   84 (253)
                      ++.+||+|+|++|||||||+++|.+..+... .++.+.++....+.+++..+.+.+|||||++.  +..+...+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            4679999999999999999999998877655 34567777777788888889999999999987  56667788999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.                                    
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~------------------------------------  124 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA------------------------------------  124 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT------------------------------------
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc------------------------------------
Confidence            999999999999999999999887753 3579999999999996                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                ..+.     +..++.+.++..++++++++||++|.|++++|++|.+.+..+..
T Consensus       125 ----------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  172 (175)
T 2nzj_A          125 ----------RCRE-----VSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRR  172 (175)
T ss_dssp             ----------TTCC-----SCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred             ----------cccc-----cCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence                      3232     44556778888899999999999999999999999999876554

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=1.3e-32  Score=210.48  Aligned_cols=174  Identities=37%  Similarity=0.648  Sum_probs=134.2

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhh
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYY   79 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~   79 (253)
                      |+. .....+||+|+|++|||||||+++|.+..+...+.++.+.++....+.++ +....+.+|||||++.+..++..++
T Consensus         1 Ms~-~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   79 (182)
T 1ky3_A            1 MSS-RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFY   79 (182)
T ss_dssp             -------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCS
T ss_pred             CCc-ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHh
Confidence            544 45678999999999999999999999998888888898888888888777 5668899999999999999999999


Q ss_pred             cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcc----cccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621          80 RGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE  155 (253)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (253)
                      +.+|++|+|||++++.+++.+..|+..+.....    .++|+++|+||+|+...                          
T Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--------------------------  133 (182)
T 1ky3_A           80 RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES--------------------------  133 (182)
T ss_dssp             TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG--------------------------
T ss_pred             hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc--------------------------
Confidence            999999999999999999999999999887754    68999999999998521                          


Q ss_pred             cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH-HhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR-EYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                         .+.     +..++..++++ ..+++++++||++|.|++++|++|.+.+.+++
T Consensus       134 -------------------~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          134 -------------------KKI-----VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN  180 (182)
T ss_dssp             -------------------GCC-----SCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             -------------------ccc-----CCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence                               111     34456677777 45689999999999999999999999887654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=3.8e-32  Score=207.28  Aligned_cols=168  Identities=35%  Similarity=0.636  Sum_probs=145.1

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      +.+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            35668999999999999999999999998888888999988888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcc----cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      +|+|||++++.++..+..|+..+.....    .++|+++|+||+|+.                                 
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~---------------------------------  129 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS---------------------------------  129 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS---------------------------------
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc---------------------------------
Confidence            9999999999999999999999887754    679999999999985                                 


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHH-HhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR-EYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                   . +.     +..++..++++ ..+++++++||++|.|++++|+.|.+.+.++
T Consensus       130 -------------~-~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          130 -------------E-RQ-----VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             -------------S-CS-----SCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             -------------c-cc-----cCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence                         1 11     44456677777 4568999999999999999999999998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=5.1e-32  Score=209.98  Aligned_cols=171  Identities=27%  Similarity=0.555  Sum_probs=148.1

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      .....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+|||||++.+..++..+++++|+
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            3456799999999999999999999999998888899887765 456678888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          85 IMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+...                                  
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~----------------------------------  142 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKD----------------------------------  142 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCT----------------------------------
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccC----------------------------------
Confidence            9999999999999997 67888887665 67999999999998621                                  


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCc-eEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVR-FMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                ..+.     +..++..++++.++++ ++++||++|.|++++|+.|.+.+..+..
T Consensus       143 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          143 ----------GSDD-----VTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKP  191 (194)
T ss_dssp             ----------TTTC-----CCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSCC
T ss_pred             ----------CCCc-----ccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcCC
Confidence                      1122     5667788999999987 9999999999999999999999987653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=2.4e-32  Score=210.99  Aligned_cols=168  Identities=36%  Similarity=0.693  Sum_probs=144.8

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc-ccchhhhcCcc
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH-TITTSYYRGAM   83 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d   83 (253)
                      +....+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+. .++..+++.+|
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            44567999999999999999999999999988888999988888888888888999999999999988 88899999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      ++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.                                   
T Consensus        96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----------------------------------  140 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR-----------------------------------  140 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG-----------------------------------
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-----------------------------------
Confidence            9999999999999999999999998875 4789999999999986                                   


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCC---CCHHHHHHHHHHHHHh
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKAN---INIEKAFIELATAIYD  223 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~gi~~l~~~l~~~~~~  223 (253)
                                 ..+.     +..++.+++++.++++++++||++|   .|++++|..|.+.+.+
T Consensus       141 -----------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          141 -----------SAIQ-----VPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS  188 (189)
T ss_dssp             -----------GGCC-----SCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred             -----------ccce-----eCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence                       2222     4556678889999999999999999   9999999999887643

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=6.4e-32  Score=207.92  Aligned_cols=165  Identities=16%  Similarity=0.317  Sum_probs=142.5

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      +....+||+|+|++|||||||+++|..+.+...+.++. .++ ...+.+++..+.+.+|||+|++.+.     +++.+|+
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~   88 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA   88 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence            45678999999999999999999999999888877774 344 3778888889999999999998776     7889999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|+|||++++.+|+.+..|+..+..... .++|+++++||+|+...                                  
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~----------------------------------  134 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAA----------------------------------  134 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTT----------------------------------
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc----------------------------------
Confidence            9999999999999999999999988753 68999999999998511                                  


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                ..+.     +..++++++++.++ ++++++||++|.|++++|++|.+.+.+++
T Consensus       135 ----------~~~~-----v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          135 ----------NPRV-----IDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             ----------BCCC-----SCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             ----------cccc-----cCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence                      1222     56677889999997 89999999999999999999999987764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2e-32  Score=213.56  Aligned_cols=170  Identities=26%  Similarity=0.427  Sum_probs=142.8

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      +....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+.+..+.+.+|||||++.+..++..+++.+|+
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            445789999999999999999999999999888888888776 5666677778899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|+|||++++.++..+..|+..+..... .++|+++|+||+|+.                                    
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~------------------------------------  142 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS------------------------------------  142 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG------------------------------------
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc------------------------------------
Confidence            9999999999999999999999877642 579999999999986                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                ..+.     +...+.+++++.++++++++||++|.|++++|+.|.+.+.+...
T Consensus       143 ----------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~  190 (201)
T 3oes_A          143 ----------PERE-----VQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVEN  190 (201)
T ss_dssp             ----------GGCC-----SCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred             ----------cccc-----cCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence                      2222     55667889999999999999999999999999999999987653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=3.7e-32  Score=205.83  Aligned_cols=165  Identities=20%  Similarity=0.310  Sum_probs=131.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc-cchhhhcCccEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT-ITTSYYRGAMGIML   87 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~il   87 (253)
                      .+||+|+|++|||||||+++|.+..+.....++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999997777666566666677777888888899999999999998876 77778999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |||++++.++..+..|+..+..... .++|+++|+||+|+.                                       
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~---------------------------------------  122 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA---------------------------------------  122 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG---------------------------------------
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh---------------------------------------
Confidence            9999999999999999999988764 489999999999986                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                             ..+.     +..++.+++++.++++++++||++|.|++++|+.|.+.+..+
T Consensus       123 -------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          123 -------RSRE-----VSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             -------GGCC-----SCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             -------hccc-----CCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence                   2232     566778899999999999999999999999999999988764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=7e-32  Score=211.98  Aligned_cols=172  Identities=55%  Similarity=1.005  Sum_probs=150.4

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      +.+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG   95 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            45678999999999999999999999998888888999988888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      +|+|||++++.++..+..|+..+......++|+++|+||+|+.                                     
T Consensus        96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-------------------------------------  138 (213)
T 3cph_A           96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-------------------------------------  138 (213)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-------------------------------------
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-------------------------------------
Confidence            9999999999999999999999988776789999999999984                                     


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR  228 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  228 (253)
                               . +.     +..+...++++.++++++++||++|.|++++|.+|.+.+.++....
T Consensus       139 ---------~-~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  187 (213)
T 3cph_A          139 ---------T-RV-----VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN  187 (213)
T ss_dssp             ---------S-CC-----SCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHHTT
T ss_pred             ---------c-cc-----cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhh
Confidence                     1 11     3445677888889999999999999999999999999887765433

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=6.7e-32  Score=207.64  Aligned_cols=178  Identities=22%  Similarity=0.502  Sum_probs=145.1

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      ....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+|||||++.|..++..+++.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            467899999999999999999999999888888888876664 4567778889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          86 MLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        86 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      |+|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.....                            ..   
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~----------------------------~~---  130 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVS----------------------------TL---  130 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHH----------------------------HH---
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchh----------------------------hH---
Confidence            999999999999998 68988887765 6899999999999862100                            00   


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeecc-CCCCHHHHHHHHHHHHHhc
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAK-ANINIEKAFIELATAIYDK  224 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~gi~~l~~~l~~~~~~~  224 (253)
                       .++...  ..+.     +..++++++++.++ ++++++||+ ++.|++++|+.|.+.+.++
T Consensus       131 -~~~~~~--~~~~-----v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~k  184 (184)
T 1m7b_A          131 -VELSNH--RQTP-----VSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK  184 (184)
T ss_dssp             -HHHHTT--TCCC-----CCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred             -hhhhhc--ccCC-----CCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhcC
Confidence             000000  1122     55667889999988 799999999 6899999999999988753

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=7.6e-32  Score=203.48  Aligned_cols=164  Identities=21%  Similarity=0.353  Sum_probs=120.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      +.+||+|+|++|||||||+++|.+...... .++.+.++ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus         1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   78 (166)
T 3q72_A            1 SVYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI   78 (166)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence            368999999999999999999987655433 45556555 3566788889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |||++++.+++.+..|+..+.... ..++|+++|+||+|+.                                       
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~---------------------------------------  119 (166)
T 3q72_A           79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV---------------------------------------  119 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC---------------------------------------
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc---------------------------------------
Confidence            999999999999999999987753 3689999999999997                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                             ..+.     +..++.+.+++.++++++++||++|.|++++|+.|.+.+..+
T Consensus       120 -------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          120 -------RSRE-----VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             -------SSCC-----SCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             -------cccc-----cCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence                   3333     566677889999999999999999999999999999988764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.7e-32  Score=208.76  Aligned_cols=168  Identities=29%  Similarity=0.454  Sum_probs=144.7

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      .....+||+|+|++|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+|||||++. ..++..+++.+|+
T Consensus        24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~  101 (196)
T 2atv_A           24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG  101 (196)
T ss_dssp             ---CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence            345689999999999999999999999998888888887665 35566788889999999999988 7778889999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.                                    
T Consensus       102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~------------------------------------  145 (196)
T 2atv_A          102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD------------------------------------  145 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG------------------------------------
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc------------------------------------
Confidence            9999999999999999999999887643 689999999999986                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCC-CHHHHHHHHHHHHHhcc
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANI-NIEKAFIELATAIYDKT  225 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~~~  225 (253)
                                ..+.     +...+..++++.++++++++||++|. |++++|++|.+.+.++.
T Consensus       146 ----------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~  193 (196)
T 2atv_A          146 ----------HSRQ-----VSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR  193 (196)
T ss_dssp             ----------GGCC-----SCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             ----------cccc-----cCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence                      2222     45567788898999999999999999 99999999999988765

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=8.7e-32  Score=203.14  Aligned_cols=163  Identities=31%  Similarity=0.562  Sum_probs=142.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ..+||+++|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            3689999999999999999999999888888888876654 556677888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |||++++.++..+..|+..+.... ..++|+++|+||+|+..                                      
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~--------------------------------------  122 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED--------------------------------------  122 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG--------------------------------------
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc--------------------------------------
Confidence            999999999999999999987764 35899999999999862                                      


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHh-CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                              .+.     +..++..++++.+ +++++++||++|.|++++|++|.+.+.
T Consensus       123 --------~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          123 --------ERV-----VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             --------GCC-----SCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             --------ccc-----CCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence                    222     4456677888887 699999999999999999999998764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=1.5e-31  Score=201.76  Aligned_cols=164  Identities=30%  Similarity=0.552  Sum_probs=141.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ..+||+|+|++|||||||++++.++.+...+.++.+..+. ..+.+++..+.+.+|||||++++..++..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            4689999999999999999999998888887888776554 456678888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |||++++.++..+..|+..+..... .++|+++++||+|+.                                       
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~---------------------------------------  122 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE---------------------------------------  122 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG---------------------------------------
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc---------------------------------------
Confidence            9999999999999999999988764 489999999999986                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                             ..+.     +..++..++++.++++++++||++|.|++++|++|.+.+.+
T Consensus       123 -------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          123 -------DKRQ-----VSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             -------GGCC-----SCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             -------ccCc-----cCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence                   2222     45567788888999999999999999999999999998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-31  Score=207.15  Aligned_cols=167  Identities=43%  Similarity=0.778  Sum_probs=149.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            45799999999999999999999999988888899998988888888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.++..+..|+..+..... .++|+++|+||+|+.                                      
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~--------------------------------------  134 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--------------------------------------  134 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--------------------------------------
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc--------------------------------------
Confidence            99999999999999999999877653 579999999999984                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                              . +.     +...+..++++.++++++++||++|.|++++|++|.+.+.+..
T Consensus       135 --------~-~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (195)
T 1x3s_A          135 --------N-RE-----VDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP  180 (195)
T ss_dssp             --------S-CC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred             --------c-cc-----cCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence                    1 11     4455678888899999999999999999999999999998654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=1.8e-31  Score=207.92  Aligned_cols=181  Identities=24%  Similarity=0.432  Sum_probs=139.5

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      .....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.|..++..+++++|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            456789999999999999999999999888888888887555 4566778888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          85 IMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|+|||++++.++..+. .|+..+..+. .++|+++|+||+|+..+...                               
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~-------------------------------  142 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKV-------------------------------  142 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHH-------------------------------
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhh-------------------------------
Confidence            99999999999999997 7999988775 58999999999999622100                               


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                       ..++...  ..+.     +..++...+++.++. +++++||++|.|++++|+.|.+.+.....
T Consensus       143 -~~~~~~~--~~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          143 -LIELDKC--KEKP-----VPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             -HHHHHTT--TCCC-----CCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             -hhhhccc--cccc-----CCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence             0000000  0111     556678889999996 99999999999999999999999877653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=8.1e-32  Score=210.84  Aligned_cols=179  Identities=22%  Similarity=0.508  Sum_probs=145.3

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      ..+..+||+|+|++|||||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++.|..++..+++.+|+
T Consensus        24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  102 (205)
T 1gwn_A           24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA  102 (205)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence            3467899999999999999999999999998888888876663 556777788999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          85 IMLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+....                            .... 
T Consensus       103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~----------------------------~~~~-  152 (205)
T 1gwn_A          103 VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDV----------------------------STLV-  152 (205)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCH----------------------------HHHH-
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccch----------------------------hhhh-
Confidence            9999999999999998 68999887765 689999999999986210                            0000 


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeecc-CCCCHHHHHHHHHHHHHhc
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAK-ANINIEKAFIELATAIYDK  224 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~gi~~l~~~l~~~~~~~  224 (253)
                         ++...  ..+.     +..++++++++.++ ++++++||+ ++.|++++|+.|.+.++.+
T Consensus       153 ---~~~~~--~~~~-----v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~~  205 (205)
T 1gwn_A          153 ---ELSNH--RQTP-----VSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK  205 (205)
T ss_dssp             ---HHHTT--TCCC-----CCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ---hhccc--ccCC-----CCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhhC
Confidence               00000  1122     55667889999988 799999999 6899999999999988753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=1.9e-32  Score=216.10  Aligned_cols=171  Identities=42%  Similarity=0.807  Sum_probs=148.8

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCe----------EEEEEEEeCCCcccccc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK----------KIKLQIWDTAGQERFHT   73 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~Dt~G~~~~~~   73 (253)
                      ..++..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++.          .+.+.+|||||++.+..
T Consensus        20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~   99 (217)
T 2f7s_A           20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS   99 (217)
T ss_dssp             -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred             CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence            35678899999999999999999999998888888888888887777777665          78899999999999999


Q ss_pred             cchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621          74 ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI  152 (253)
Q Consensus        74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (253)
                      ++..+++.+|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.                         
T Consensus       100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~-------------------------  154 (217)
T 2f7s_A          100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP-------------------------  154 (217)
T ss_dssp             HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG-------------------------
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc-------------------------
Confidence            999999999999999999999999999999988866543 679999999999986                         


Q ss_pred             cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                           ..+.     +...+.+++++.++++++++||++|.|++++|++|.+.+.++.
T Consensus       155 ---------------------~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~  201 (217)
T 2f7s_A          155 ---------------------DQRE-----VNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM  201 (217)
T ss_dssp             ---------------------GGCC-----SCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             ---------------------cccc-----cCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence                                 2222     4456778889999999999999999999999999999887754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=2.6e-31  Score=207.00  Aligned_cols=165  Identities=33%  Similarity=0.580  Sum_probs=145.2

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeE----------------------------
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKK----------------------------   57 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------   57 (253)
                      +++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+.+..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            4568999999999999999999999999888888999888887777777654                            


Q ss_pred             ---------EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccc
Q psy9621          58 ---------IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG  128 (253)
Q Consensus        58 ---------~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  128 (253)
                               ..+.+|||||++.+..++..+++.+|++|+|||++++.++..+..|+..+....  +.|+++|+||+|.. 
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D~~-  160 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKIDKN-  160 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTTCC-
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCCcc-
Confidence                     889999999999999999999999999999999999999999999999998775  49999999999932 


Q ss_pred             ccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCC
Q psy9621         129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANI  208 (253)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  208 (253)
                                                                    .+.     +..++.+++++.++++++++||++|.
T Consensus       161 ----------------------------------------------~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~  189 (208)
T 3clv_A          161 ----------------------------------------------KFQ-----VDILEVQKYAQDNNLLFIQTSAKTGT  189 (208)
T ss_dssp             -----------------------------------------------CC-----SCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred             ----------------------------------------------ccc-----CCHHHHHHHHHHcCCcEEEEecCCCC
Confidence                                                          222     45567788889999999999999999


Q ss_pred             CHHHHHHHHHHHHHhc
Q psy9621         209 NIEKAFIELATAIYDK  224 (253)
Q Consensus       209 gi~~l~~~l~~~~~~~  224 (253)
                      |++++|++|.+.+.++
T Consensus       190 ~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          190 NIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=1.4e-31  Score=201.72  Aligned_cols=163  Identities=29%  Similarity=0.525  Sum_probs=142.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++....+.+|||||++.+..++..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999888888788876444 56677888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||++++.+++.+..|+..+..... .+.|+++|+||+|+.                                        
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----------------------------------------  121 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE----------------------------------------  121 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG----------------------------------------
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc----------------------------------------
Confidence            999999999999999999877653 589999999999986                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                            ..+.     +...+.+++++.++++++++||++|.|++++|+.|.+.+.+
T Consensus       122 ------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          122 ------SERE-----VSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             ------GGCC-----SCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             ------cccc-----CCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence                  2222     44566788888999999999999999999999999988754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=2.3e-31  Score=204.49  Aligned_cols=169  Identities=30%  Similarity=0.532  Sum_probs=145.7

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      .....+||+|+|++|||||||+++|.+..+...+.++.+..+. ..+.+.+..+.+.+|||||++.+..++..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   92 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence            4456799999999999999999999998888888888776553 456677888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|+|||++++.++..+..|+..+..... .++|+++|+||+|+.                                    
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~------------------------------------  136 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE------------------------------------  136 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG------------------------------------
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc------------------------------------
Confidence            9999999999999999999999988764 489999999999986                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                ..+.     +...+.+++++.++++++++||+++.|++++|++|.+.+..+.
T Consensus       137 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  183 (187)
T 2a9k_A          137 ----------DKRQ-----VSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK  183 (187)
T ss_dssp             ----------GGCC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             ----------ccCc-----cCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence                      2222     4456778888899999999999999999999999999987654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-31  Score=209.81  Aligned_cols=169  Identities=20%  Similarity=0.341  Sum_probs=137.4

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCC--CCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc-ccccchhhhcC
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDA--FNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER-FHTITTSYYRG   81 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~   81 (253)
                      ..+..+||+|+|++|||||||+++|.+..  +... .++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~  111 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV  111 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence            34567999999999999999999998643  3333 34466677777788888889999999999876 45566778899


Q ss_pred             ccEEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          82 AMGIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      ++++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.                                 
T Consensus       112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~---------------------------------  158 (211)
T 2g3y_A          112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV---------------------------------  158 (211)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG---------------------------------
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh---------------------------------
Confidence            999999999999999999999998887643 3579999999999996                                 


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                   ..+.     +..++.+.++..+++++++|||++|.||+++|+.|.+.+..+.
T Consensus       159 -------------~~r~-----v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~~  205 (211)
T 2g3y_A          159 -------------RCRE-----VSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR  205 (211)
T ss_dssp             -------------GGCC-----SCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             -------------cCce-----EeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence                         2222     4455677888889999999999999999999999999886544

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=2.2e-31  Score=203.38  Aligned_cols=163  Identities=18%  Similarity=0.326  Sum_probs=136.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+|+|++|||||||+++|.++.+.. +.++.+..+ ...+.+++..+.+.+|||+|++.     ..+++++|++|
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            457999999999999999999999988876 678887554 56677888889999999999876     45789999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc---ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHA---NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|||++++.++..+..|+..+....   ..++|+++|+||+|+...                                  
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~----------------------------------  123 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS----------------------------------  123 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTT----------------------------------
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc----------------------------------
Confidence            9999999999999999877665553   258999999999998411                                  


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHh-CCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                ..+.     +..++++++++.+ +++++++||++|.|++++|+.|.+.+....
T Consensus       124 ----------~~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  171 (178)
T 2iwr_A          124 ----------SPRV-----VGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLR  171 (178)
T ss_dssp             ----------BCCC-----SCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             ----------ccCc-----CCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence                      1122     5556778888877 589999999999999999999999887654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=6.5e-32  Score=213.67  Aligned_cols=172  Identities=28%  Similarity=0.541  Sum_probs=152.2

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR   80 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (253)
                      |........+||+|+|++|||||||+++|+.+.+...+.++.+.++......+++..+.+.+|||||++.+..++..+++
T Consensus         7 ~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   86 (221)
T 3gj0_A            7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI   86 (221)
T ss_dssp             CSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred             ccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHh
Confidence            34556778899999999999999999998888888888899999998888888999999999999999999999999999


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      ++|++|+|||++++.++..+..|+..+.... .++|+++|+||+|+..                                
T Consensus        87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~--------------------------------  133 (221)
T 3gj0_A           87 QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKD--------------------------------  133 (221)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSS--------------------------------
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccc--------------------------------
Confidence            9999999999999999999999999998876 6899999999999862                                


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                    ..       .......+++.++++++++||++|.|++++|.+|.+.+.....
T Consensus       134 --------------~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          134 --------------RK-------VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN  178 (221)
T ss_dssp             --------------CS-------SCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCTT
T ss_pred             --------------cc-------ccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence                          11       1224566788889999999999999999999999999987654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.98  E-value=1.5e-31  Score=211.04  Aligned_cols=173  Identities=27%  Similarity=0.462  Sum_probs=147.8

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      ..+..+||+|+|++|||||||+++|.++.+...+.++.+.+......... +..+.+.+|||||++.+..++..+++.+|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            45678999999999999999999999988888888888877776665544 34488999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ++|+|||++++.++..+..|+..+......++|+++|+||+|+.                                    
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~------------------------------------  130 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK------------------------------------  130 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC------------------------------------
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc------------------------------------
Confidence            99999999999999999999999988877789999999999986                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGR  228 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  228 (253)
                                ..+.     +.......+++..+++++++||++|.|++++|+.|.+.+.......
T Consensus       131 ----------~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~  180 (218)
T 4djt_A          131 ----------NRQK-----ISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLI  180 (218)
T ss_dssp             -------------------CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTCC
T ss_pred             ----------cccc-----cCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcccccc
Confidence                      2222     5556677888888999999999999999999999999998766544

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.98  E-value=4.9e-31  Score=202.55  Aligned_cols=177  Identities=25%  Similarity=0.502  Sum_probs=145.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ..+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            478999999999999999999999888888888887554 4556778888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |||++++.++..+. .|+..+.... .++|+++|+||+|+.....                             ......
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~-----------------------------~~~~~~  132 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKD-----------------------------TIEKLK  132 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHH-----------------------------HHHHHH
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccch-----------------------------hhhhhc
Confidence            99999999999997 7988888765 4899999999999862210                             001111


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                      +.     ..+.     +..++..++++.++. +++++||++|.|++++|+.|.+.+....
T Consensus       133 ~~-----~~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          133 EK-----KLTP-----ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             HT-----TCCC-----CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred             cc-----cccc-----CCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence            00     0111     556678889999996 9999999999999999999999887543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.98  E-value=2.5e-33  Score=218.34  Aligned_cols=169  Identities=54%  Similarity=0.977  Sum_probs=142.3

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      ..+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus        29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  108 (199)
T 3l0i_B           29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG  108 (199)
T ss_dssp             CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence            34678999999999999999999999998888888888888888888889888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      +|+|||++++.+++.+..|+..+......++|+++|+||+|+.                                     
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~-------------------------------------  151 (199)
T 3l0i_B          109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-------------------------------------  151 (199)
T ss_dssp             EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-------------------------------------
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC-------------------------------------
Confidence            9999999999999999999999988776789999999999986                                     


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                               ..+.     +...+.+++++.++++++++||++|.|++++|++|.+.+.++
T Consensus       152 ---------~~~~-----v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~~  197 (199)
T 3l0i_B          152 ---------TKKV-----VDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR  197 (199)
T ss_dssp             -----------CC-----CCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTTT
T ss_pred             ---------cccc-----CCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence                     2222     445567888999999999999999999999999998876543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.98  E-value=3.4e-32  Score=212.81  Aligned_cols=168  Identities=20%  Similarity=0.434  Sum_probs=111.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcC--CCCCcccCccceeeEEEEEeeCCe--EEEEEEEeCCCcccccccchhhhcCc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDD--AFNTTFISTIGIDFKIKTVDLKGK--KIKLQIWDTAGQERFHTITTSYYRGA   82 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~   82 (253)
                      ...+||+|+|++|||||||+++|.+.  .+...+.++.+.++....+.+.+.  .+.+.+|||||++.+..++..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            45689999999999999999999988  777788888887887778888876  88999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcc---cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621          83 MGIMLVYDITNEKSFDNILKWLRNIDEHAN---EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD  159 (253)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (253)
                      |++|+|||++++.++..+..|+..+.....   .++|+++|+||+|+.                                
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~--------------------------------  145 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP--------------------------------  145 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-----------------------------------
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc--------------------------------
Confidence            999999999999999999999999988875   689999999999986                                


Q ss_pred             hHHHHHHhhhhhcCC-CchhhhhhccchhHHHHHHHhCCceEEeeccC-CCCHHHHHHHHHHHHHhcc
Q psy9621         160 NILKWLRNIDEHANE-DPQVVNSWVCKHRGEAIAREYGVRFMETSAKA-NINIEKAFIELATAIYDKT  225 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~gi~~l~~~l~~~~~~~~  225 (253)
                                    . .+.     +..++..++++.++++++++||++ |.|++++|++|.+.+.+..
T Consensus       146 --------------~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          146 --------------PQRHQ-----VRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY  194 (208)
T ss_dssp             ------------------C-----CCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHH
T ss_pred             --------------hhhcc-----CCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence                          2 222     555678889999999999999999 9999999999999887643

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.3e-30  Score=204.18  Aligned_cols=179  Identities=26%  Similarity=0.512  Sum_probs=140.8

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      ....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (207)
T 2fv8_A           22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (207)
T ss_dssp             GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred             cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence            356789999999999999999999999888888888876665 3467788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          86 MLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        86 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      |+|||++++.++..+ ..|+..+.... .++|+++|+||+|+.....                             ..++
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~-----------------------------~~~~  150 (207)
T 2fv8_A          101 LMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEH-----------------------------VRTE  150 (207)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHH-----------------------------HHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhcccc-----------------------------chhh
Confidence            999999999999998 67888887754 6899999999999963211                             1111


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                      +.++     ..+.     +..++..++++.++. +++++||++|.|++++|+.|.+.+....
T Consensus       151 ~~~~-----~~~~-----v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          151 LARM-----KQEP-----VRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             HHHT-----TCCC-----CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred             hhhc-----ccCC-----CCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence            1111     1111     555677889999887 9999999999999999999999987654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.97  E-value=1.2e-30  Score=203.43  Aligned_cols=177  Identities=27%  Similarity=0.506  Sum_probs=145.5

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      ....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence            456899999999999999999999999988888888887765 3467788888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          86 MLVYDITNEKSFDNI-LKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        86 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      |+|||++++.++..+ ..|+..+.... .++|+++|+||+|+.....                             ....
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~-----------------------------~~~~  150 (201)
T 2gco_A          101 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEH-----------------------------TRRE  150 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHH-----------------------------HHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCcc-----------------------------chhh
Confidence            999999999999999 57888887765 5899999999999973211                             0001


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                      ..   +.  ..+.     +..++..++++.++. +++++||++|.|++++|+.|.+.+.+
T Consensus       151 ~~---~~--~~~~-----v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          151 LA---KM--KQEP-----VRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             HH---TT--TCCC-----CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             hc---cc--ccCc-----CCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            11   10  0111     556678889999997 99999999999999999999988753

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.97  E-value=7.3e-31  Score=206.72  Aligned_cols=178  Identities=31%  Similarity=0.585  Sum_probs=125.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            3579999999999999999999999888888788876554 455677888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+..                             ....
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~-----------------------------~~~~  160 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSL-----------------------------VNKL  160 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHH-----------------------------HHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchh-----------------------------hhhh
Confidence            999999999999997 7998887765 67999999999999732110                             0000


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                      ...     ..+.     +..+++.++++.+++ +++++||++|.|++++|+.|.+.+.+..
T Consensus       161 ~~~-----~~~~-----v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          161 RRN-----GLEP-----VTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             HHT-----TCCC-----CCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred             ccc-----ccCc-----ccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence            000     0111     556678899999997 9999999999999999999999987654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=4.7e-32  Score=210.21  Aligned_cols=167  Identities=20%  Similarity=0.256  Sum_probs=137.4

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcc-----------cCccceeeEEEEE-eeCCeEEEEEEEeCCCccccc
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTF-----------ISTIGIDFKIKTV-DLKGKKIKLQIWDTAGQERFH   72 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~   72 (253)
                      ..+..+||+|+|++|||||||++.+.+ .+...+           .++++.++....+ .+++..+.+.+|||||++.+.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            456789999999999999999965554 454443           3466666655444 566778899999999999999


Q ss_pred             ccchhhhcCccEEEEEEeCC------ChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceee
Q psy9621          73 TITTSYYRGAMGIMLVYDIT------NEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGI  146 (253)
Q Consensus        73 ~~~~~~~~~~d~~ilv~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  146 (253)
                      .++..+++++|++|+|||++      +..++..+..|+..+.. ...++|+++|+||+|+..+                 
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~~-----------------  150 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPDA-----------------  150 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTTC-----------------
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhcccc-----------------
Confidence            99999999999999999999      56778888888888733 3378999999999998621                 


Q ss_pred             EEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         147 MLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                                          +..++.+++++.+++ +++++||++|.|++++|++|.+.+.++.
T Consensus       151 ------------------------------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~  194 (198)
T 3t1o_A          151 ------------------------------------LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV  194 (198)
T ss_dssp             ------------------------------------CCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------cCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence                                                455677888888998 9999999999999999999999998765


Q ss_pred             C
Q psy9621         226 S  226 (253)
Q Consensus       226 ~  226 (253)
                      .
T Consensus       195 ~  195 (198)
T 3t1o_A          195 A  195 (198)
T ss_dssp             C
T ss_pred             h
Confidence            4

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=6.4e-31  Score=199.20  Aligned_cols=164  Identities=28%  Similarity=0.456  Sum_probs=139.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ..+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+..++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            4689999999999999999999998888777888775554 445667778899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      |||++++.+++.+..|+..+.....  .++|+++|+||+|+..                                     
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~-------------------------------------  123 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP-------------------------------------  123 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG-------------------------------------
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc-------------------------------------
Confidence            9999999999999999888877642  4799999999999862                                     


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                               .+.     +...+.+.+++.++++++++||++|.|++++|++|.+.+..
T Consensus       124 ---------~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  167 (172)
T 2erx_A          124 ---------SRE-----VQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR  167 (172)
T ss_dssp             ---------GCC-----SCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred             ---------ccc-----cCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence                     222     44456678888899999999999999999999999886543

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=1.7e-31  Score=204.55  Aligned_cols=174  Identities=26%  Similarity=0.550  Sum_probs=127.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+|+|++|||||||++++..+.+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            45789999999999999999999998888777888765443 23445566778899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+..                                .
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~--------------------------------~  131 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQF--------------------------------F  131 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHH--------------------------------H
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCccc--------------------------------c
Confidence            999999999999997 7999888775 58999999999998622110                                0


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                      ..    ......     +...+..++++.++. +++++||++|.|++++|+.|.+.+..
T Consensus       132 ~~----~~~~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          132 ID----HPGAVP-----ITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             HH----C--CCC-----CCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             cc----cccCCC-----CCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            00    000111     455677889999996 99999999999999999999988753

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.97  E-value=4.1e-30  Score=198.43  Aligned_cols=166  Identities=31%  Similarity=0.517  Sum_probs=134.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      -..+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            3568999999999999999999999888877777776554 355667788889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.++..+..|+..+..... .++|+++|+||+|+.                                      
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~--------------------------------------  139 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP--------------------------------------  139 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS--------------------------------------
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC--------------------------------------
Confidence            99999999999999999999877653 579999999999986                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                              . +.     ...++.+++++.++++++++||++|.|++++|++|.+.+.+.+
T Consensus       140 --------~-~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  185 (190)
T 3con_A          140 --------T-RT-----VDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR  185 (190)
T ss_dssp             --------C-CC-----SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             --------c-cc-----CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence                    2 11     4456778889999999999999999999999999999887654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.97  E-value=5.2e-30  Score=192.82  Aligned_cols=162  Identities=32%  Similarity=0.562  Sum_probs=141.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+++|++|||||||++++.+..+...+.++.+..+ ...+..++..+.+.+|||||++++..++..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            57999999999999999999999888877777776444 45566778888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||++++.++..+..|+..+..... .++|+++++||+|+.                                        
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~----------------------------------------  121 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA----------------------------------------  121 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS----------------------------------------
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh----------------------------------------
Confidence            999999999999999999887753 479999999999986                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                            . +.     ......+++++.++++++++||++|.|++++|++|.+.+.+
T Consensus       122 ------~-~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          122 ------A-RT-----VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             ------C-CC-----SCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred             ------h-cc-----cCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence                  2 11     44566788888999999999999999999999999998754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=3.8e-30  Score=199.32  Aligned_cols=167  Identities=20%  Similarity=0.353  Sum_probs=134.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcC--CCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc-ccccchhhhcCcc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDD--AFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER-FHTITTSYYRGAM   83 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d   83 (253)
                      ...+||+|+|++|||||||+++|.+.  .+...+ ++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            45799999999999999999999853  333333 3456677777788888889999999999876 5567778889999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      ++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.                                   
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~-----------------------------------  127 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-----------------------------------  127 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG-----------------------------------
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh-----------------------------------
Confidence            9999999999999999999998887653 3579999999999986                                   


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                 ..+.     +...++..++..+++++++|||++|.||+++|+.|.+.+....
T Consensus       128 -----------~~r~-----v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~  174 (192)
T 2cjw_A          128 -----------RXRE-----VSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR  174 (192)
T ss_dssp             -----------GGCC-----SCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             -----------cccc-----ccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence                       2222     4445667788888999999999999999999999999886544

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=2.5e-30  Score=200.89  Aligned_cols=170  Identities=12%  Similarity=0.259  Sum_probs=132.3

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGA   82 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   82 (253)
                      .+....+||+|+|++|||||||+++|.+..+.. .+.++.+....  .+  ....+.+.+|||||++.+..++..+++.+
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   87 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNI   87 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EE--EETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence            356778999999999999999999999999888 78888884443  33  34557899999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcc--------cccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621          83 MGIMLVYDITNEKSFDNILKWLRNIDEHAN--------EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN  154 (253)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (253)
                      |++|+|||++++.+|..+..|+..+.....        .++|+++|+||+|+......                      
T Consensus        88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----------------------  145 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA----------------------  145 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH----------------------
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH----------------------
Confidence            999999999999999999999998876532        28999999999999722110                      


Q ss_pred             ccchhhHHHHHHhhhhhcCCCchhhhhhccchh-HHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR-GEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                           .+     +.... ...+++..+++++++||++|.||+++|+.|.+.+.++.
T Consensus       146 ---------------------~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          146 ---------------------AE-----LVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             ---------------------HH-----HHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             ---------------------HH-----HHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence                                 00     11111 12223556789999999999999999999999988764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=5.2e-30  Score=200.36  Aligned_cols=176  Identities=25%  Similarity=0.480  Sum_probs=140.1

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      .....+||+|+|++|||||||+++|..+.+...+.++.+. .....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV  104 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            3456799999999999999999999998888887888763 444566778888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          85 IMLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+..                             .+
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~-----------------------------~~  154 (204)
T 4gzl_A          105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT-----------------------------IE  154 (204)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHH-----------------------------HH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhh-----------------------------hh
Confidence            99999999999999997 8988888776 78999999999999732110                             00


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                      ...+   .  ..+.     +..++...+++.++. +++++||++|.|++++|++|.+.+
T Consensus       155 ~~~~---~--~~~~-----v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          155 KLKE---K--KLTP-----ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             HHHH---T--TCCC-----CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             hhhc---c--cccc-----ccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            0000   0  1111     556678889999985 699999999999999999998754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=1e-29  Score=192.56  Aligned_cols=166  Identities=20%  Similarity=0.338  Sum_probs=130.2

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      ....+||+|+|++|||||||+++|..+.+.. +.++.+...  ..+.+.  ...+.+|||||++.+..++..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i   78 (171)
T 1upt_A            4 MTREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAV   78 (171)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEE
Confidence            3567999999999999999999999887754 467776443  344444  56799999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      |+|||++++.++..+..|+..+..... .++|+++|+||+|+..+...                                
T Consensus        79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------------------------------  126 (171)
T 1upt_A           79 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS--------------------------------  126 (171)
T ss_dssp             EEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--------------------------------
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCH--------------------------------
Confidence            999999999999999998888766532 68999999999999622100                                


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                 .+     +........++..+++++++||++|.|++++|++|.+.+.++
T Consensus       127 -----------~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A          127 -----------SE-----MANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             -----------HH-----HHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             -----------HH-----HHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhhc
Confidence                       00     111111222334567899999999999999999999988764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=4.1e-29  Score=194.45  Aligned_cols=169  Identities=44%  Similarity=0.804  Sum_probs=146.3

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      +++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.++++
T Consensus         2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~   81 (199)
T 2f9l_A            2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   81 (199)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence            36689999999999999999999999988888889988888888888899889999999999999998999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      ++|||++++.++..+..|+..+......+.|+++++||+|+..                                     
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-------------------------------------  124 (199)
T 2f9l_A           82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-------------------------------------  124 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-------------------------------------
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-------------------------------------
Confidence            9999999999999998999888766556799999999999862                                     


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                               ...     ....+++.++...++.++++||+++.|++++|+.|.+.+.+..
T Consensus       125 ---------~~~-----~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~  170 (199)
T 2f9l_A          125 ---------LRA-----VPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV  170 (199)
T ss_dssp             ---------GCC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             ---------ccC-----cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence                     121     3334577888889999999999999999999999999887654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=8.9e-29  Score=191.40  Aligned_cols=168  Identities=43%  Similarity=0.801  Sum_probs=147.3

Q ss_pred             ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCc
Q psy9621           3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGA   82 (253)
Q Consensus         3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   82 (253)
                      ...++..++|+|+|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+
T Consensus        23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~  102 (191)
T 1oix_A           23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA  102 (191)
T ss_dssp             -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence            44567789999999999999999999999988888899999998888888999888999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          83 MGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      +++++|||+++..+++.+..|+..+......+.|+++++||+|+..                                  
T Consensus       103 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~----------------------------------  148 (191)
T 1oix_A          103 VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH----------------------------------  148 (191)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG----------------------------------
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc----------------------------------
Confidence            9999999999999999998999888766556789999999999862                                  


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                                  ...     .....++.++...++.++++||+++.|++++|+.|.+.+
T Consensus       149 ------------~~~-----~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          149 ------------LRA-----VPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             ------------GCC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ------------ccc-----cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence                        111     334567888888999999999999999999999998765

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=4.1e-30  Score=198.33  Aligned_cols=166  Identities=20%  Similarity=0.352  Sum_probs=130.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+|+|++|||||||+++|.++.+...+.++.+.++..  +.  ...+.+.+|||||++.+..++..+++++|++|
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            457999999999999999999999988887888888877653  32  24577999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.++..+..|+..+.... ..++|+++|+||+|+..+...                          .+     
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--------------------------~~-----  144 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE--------------------------KE-----  144 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH--------------------------HH-----
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCH--------------------------HH-----
Confidence            9999999999999999998886643 268999999999998621000                          00     


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                       +........+...+++++++||++|.|++++|++|.+.+.++
T Consensus       145 -----------------~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          145 -----------------LIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             -----------------HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC--
T ss_pred             -----------------HHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence                             001111111223456899999999999999999999876543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.96  E-value=5.3e-30  Score=192.95  Aligned_cols=161  Identities=19%  Similarity=0.371  Sum_probs=123.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+|+|++|||||||+++|.++.+.. +.||.+...  ..+..  ....+.+|||||++.+..++..+++++|++|+||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCE--EEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeE--EEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877764 467777433  33333  4577999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHh-cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEH-ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      |++++.++..+..|+..+... ...+.|+++|+||+|+..+...                                    
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~------------------------------------  119 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA------------------------------------  119 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH------------------------------------
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCH------------------------------------
Confidence            999999999999998887664 2358999999999998621000                                    


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                             .+     +........++..+++++++||++|.|++++|++|.+.+..
T Consensus       120 -------~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          120 -------AE-----ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             -------HH-----HHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             -------HH-----HHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence                   00     11111112222345689999999999999999999987754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=1.1e-29  Score=196.74  Aligned_cols=167  Identities=19%  Similarity=0.333  Sum_probs=123.8

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      ......+||+|+|++|||||||+++|..+.+.. +.||.+..  ...+..  ..+.+.+|||||++.+..++..+++.+|
T Consensus        24 ~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   98 (192)
T 2b6h_A           24 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQ   98 (192)
T ss_dssp             TTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEE--EEEEEE--TTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred             hccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCcee--EEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence            345678999999999999999999999887764 46677633  333444  3478999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      ++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+..+...                          +   
T Consensus        99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~--------------------------~---  149 (192)
T 2b6h_A           99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPV--------------------------S---  149 (192)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--------------------------H---
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCH--------------------------H---
Confidence            9999999999999999999998876543 357999999999998621000                          0   


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                    +     +........++..+++++++||++|.|++++|++|.+.+.+
T Consensus       150 --------------~-----i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          150 --------------E-----LTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK  191 (192)
T ss_dssp             --------------H-----HHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred             --------------H-----HHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHhc
Confidence                          0     11111122222345689999999999999999999987643

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.96  E-value=5.7e-29  Score=192.12  Aligned_cols=161  Identities=16%  Similarity=0.256  Sum_probs=127.4

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCC-CCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDA-FNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      ....+||+|+|++|||||||+++|.+.. +...+.++.+.  ....+.+++  ..+.+|||||++.+..++..+++++|+
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA   93 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            4567999999999999999999999877 56667777763  334455553  679999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcc---cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHAN---EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI  161 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      +|+|||++++.++..+..|+..+.....   .++|+++|+||+|+..+                                
T Consensus        94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------------------------  141 (190)
T 2h57_A           94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--------------------------------  141 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--------------------------------
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--------------------------------
Confidence            9999999999999999999998877643   57999999999998621                                


Q ss_pred             HHHHHhhhhhcCCCchhhhhhccchhHHHHHH-----HhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR-----EYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                           ...++..+...     ..+++++++||++|.|++++|++|.+.+.+
T Consensus       142 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          142 ---------------------VTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             ---------------------CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             ---------------------CCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence                                 11112222221     235789999999999999999999987644

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=4.1e-30  Score=197.72  Aligned_cols=169  Identities=21%  Similarity=0.357  Sum_probs=125.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcC--CCCCcccCccceeeEEEEEee---CCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDD--AFNTTFISTIGIDFKIKTVDL---KGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      .+||+|+|++|||||||+++|.+.  .+...+.++++.++....+.+   .+..+.+.+|||+|+++|..++..++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            579999999999999999999984  455667888888877665544   235678999999999999999999999999


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          84 GIMLVYDITNE-KSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        84 ~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      ++++|||++++ .++..+..|+..+.... .++|+++|+||+|+..+                                 
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~---------------------------------  127 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDE---------------------------------  127 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCH---------------------------------
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccc---------------------------------
Confidence            99999999997 57999999999987764 57999999999998621                                 


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCc----eEEeeccCCC-CHHHHHHHHHHHHHhccC
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVR----FMETSAKANI-NIEKAFIELATAIYDKTS  226 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Sa~~~~-gi~~l~~~l~~~~~~~~~  226 (253)
                                   ..  ...........+++.++++    ++++||++|. |++++++.|.+.+.....
T Consensus       128 -------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~  181 (184)
T 2zej_A          128 -------------KQ--RKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKI  181 (184)
T ss_dssp             -------------HH--HHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred             -------------hh--hHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcccc
Confidence                         11  0001123445666667776    9999999997 999999999998876443

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=3.6e-29  Score=192.79  Aligned_cols=161  Identities=16%  Similarity=0.261  Sum_probs=125.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+|+|++|||||||+++|.++.+. .+.++.+.+..  .+.++  ...+.+|||||++++..++..+++++|++|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE--EIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCE--EEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999988777 56777775443  34444  378999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||+++++++..+..|+..+.... ..+.|+++|+||+|+..+                                    
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------------------------------  132 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC------------------------------------  132 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC------------------------------------
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC------------------------------------
Confidence            9999999999999999999987753 267999999999998621                                    


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHH-----HHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAI-----AREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                       ...++..+.     .+..+++++++||++|.|++++|++|.+.+....
T Consensus       133 -----------------~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  180 (187)
T 1zj6_A          133 -----------------MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRL  180 (187)
T ss_dssp             -----------------CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC--
T ss_pred             -----------------CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHHh
Confidence                             001111111     1234578999999999999999999999876544

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.96  E-value=3.2e-29  Score=192.77  Aligned_cols=165  Identities=21%  Similarity=0.337  Sum_probs=129.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+|+|++|||||||++++.++. ...+.|+.+...  ..+.++  ...+.+|||||++++...+..+++++|++|
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            578999999999999999999999887 666778887443  344444  477999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.++..+..|+..+.... ..++|+++|+||+|+..+...                          ++     
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------------------------~~-----  139 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC--------------------------NA-----  139 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--------------------------HH-----
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCH--------------------------HH-----
Confidence            9999999999999999998887653 267999999999998622100                          00     


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                       +........++..+++++++||++|.|++++|++|.+.+.++
T Consensus       140 -----------------~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          140 -----------------IQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             -----------------HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             -----------------HHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence                             000000011123457899999999999999999999988764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.96  E-value=3.8e-29  Score=194.56  Aligned_cols=171  Identities=16%  Similarity=0.223  Sum_probs=118.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+++|++|||||||+++|.++.+. .+.+|.+.+.  ..+.+++  ..+.+|||||++.+..++..+++++|++|
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            44689999999999999999999987765 4567776553  3445554  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.+|..+..|+..+.+.. ..++|+++|+||+|+..+                          ...+++.++.
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------------------~~~~~~~~~~  151 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--------------------------ISEERLREMF  151 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--------------------------CCHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc--------------------------CCHHHHHHHh
Confidence            9999999999999999999887653 368999999999998621                          1112222221


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHH--HhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAR--EYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                      ........            .....+..  ..++++++|||++|.|++++|++|.+.
T Consensus       152 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          152 GLYGQTTG------------KGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             TCTTTCCC------------SSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             Cccccccc------------ccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence            11100000            00000000  134689999999999999999999764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=2.8e-29  Score=193.64  Aligned_cols=166  Identities=17%  Similarity=0.308  Sum_probs=129.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+|+|++|||||||++++..+.+.. +.||.+...  ..+...  ...+.+|||||++.+..++..+++.+|++|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            578999999999999999999999877654 567777443  334443  477999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.++..+..|+..+.... ..+.|+++|+||+|+..+...                                 
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---------------------------------  141 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASE---------------------------------  141 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCH---------------------------------
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCH---------------------------------
Confidence            9999999999999999888876643 257999999999999622100                                 


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                .+     +........++..+++++++||++|.|++++|+.|.+.+.++.
T Consensus       142 ----------~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  186 (189)
T 2x77_A          142 ----------AE-----IAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQG  186 (189)
T ss_dssp             ----------HH-----HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred             ----------HH-----HHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhcc
Confidence                      00     1111111222334568999999999999999999999987654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=2.5e-29  Score=192.74  Aligned_cols=163  Identities=16%  Similarity=0.257  Sum_probs=124.7

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      +....+||+|+|++|||||||+++|.++.+ ..+.++.+....  .+.+++  ..+.+|||||++.+..++..+++.+|+
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF   91 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            455689999999999999999999998887 556777775543  344443  789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|+|||++++.++..+..|+..+.... ..++|+++|+||+|+..+...                          ++   
T Consensus        92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--------------------------~~---  142 (181)
T 2h17_A           92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV--------------------------AE---  142 (181)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--------------------------HH---
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCH--------------------------HH---
Confidence            999999999999999999988887653 368999999999998621000                          00   


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                         +.........+..+++++++||++|.|++++|++|.+.
T Consensus       143 -------------------i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          143 -------------------ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             -------------------HHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred             -------------------HHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence                               00000111112345689999999999999999998753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=2.4e-29  Score=192.95  Aligned_cols=164  Identities=20%  Similarity=0.303  Sum_probs=125.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+++|++|||||||+++|.+..+ ..+.|+.|...  ..+.++  .+.+.+|||||++.+..++..+++++|++|
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNI--KSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEE--EEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEE--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            5689999999999999999999998754 34567777443  344444  467999999999999998999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.++..+..|+..+.... ..++|+++++||+|+..+...                          ++     
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--------------------------~~-----  137 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA--------------------------SE-----  137 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH--------------------------HH-----
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH--------------------------HH-----
Confidence            9999999999999999988876542 367999999999998622110                          00     


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                       +........+...+++++++||++|.|++++|++|.+.+.+
T Consensus       138 -----------------~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          138 -----------------IAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             -----------------HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred             -----------------HHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence                             00000011112235689999999999999999999987654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.96  E-value=1.3e-28  Score=190.23  Aligned_cols=168  Identities=22%  Similarity=0.246  Sum_probs=123.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+++|++|||||||++++.++.+. .+.++.+.+.  ..+.+++  ..+.+|||||++.+..++..+++.+|++|
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS--EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEE--EEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCe--EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            34679999999999999999999988775 4467776543  4455554  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.++..+..|+..+.... ..++|+++|+||+|+..+.                          +.+++.++.
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--------------------------~~~~~~~~~  149 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV--------------------------SEAELRSAL  149 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--------------------------CHHHHHHHT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCC--------------------------CHHHHHHHh
Confidence            9999999999999999999887653 3689999999999986210                          111111111


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                      ....              ...... ++...+++++++||++|.|++++|++|.+.
T Consensus       150 ~~~~--------------~~~~~~-~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          150 GLLN--------------TTGSQR-IEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TCSS--------------CCC----CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             CCcc--------------cccccc-ccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            1000              000000 122345789999999999999999998753

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=4.8e-29  Score=193.62  Aligned_cols=170  Identities=17%  Similarity=0.227  Sum_probs=124.6

Q ss_pred             ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEE--eeC-CeEEEEEEEeCCCcccccccc---h
Q psy9621           3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV--DLK-GKKIKLQIWDTAGQERFHTIT---T   76 (253)
Q Consensus         3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~l~Dt~G~~~~~~~~---~   76 (253)
                      ..+.+..+||+|+|++|||||||++++.+. +...  ++.+.++....+  .+. +..+.+.+|||+|++.|....   .
T Consensus        14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~   90 (196)
T 3llu_A           14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE   90 (196)
T ss_dssp             ------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred             CcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence            346778999999999999999999988764 4333  333433332222  232 566889999999999988777   8


Q ss_pred             hhhcCccEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621          77 SYYRGAMGIMLVYDITNE--KSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN  154 (253)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (253)
                      .+++++|++|+|||++++  +++..+..|+..+.... .++|+++|+||+|+.....                       
T Consensus        91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~-----------------------  146 (196)
T 3llu_A           91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDH-----------------------  146 (196)
T ss_dssp             HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHH-----------------------
T ss_pred             cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhh-----------------------
Confidence            999999999999999997  67777778888775544 6899999999999862100                       


Q ss_pred             ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH----HhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR----EYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                                           .....+.+......++++    .+++++++|||++ .||+++|..|++.+
T Consensus       147 ---------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          147 ---------------------KIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             ---------------------hhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence                                 000011145556777787    6788999999999 99999999998865

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=5.5e-29  Score=190.76  Aligned_cols=166  Identities=22%  Similarity=0.366  Sum_probs=125.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+|+|++|||||||++++..+.+ ..+.++.+...  ..+.++  ...+.+|||||++.+...+..+++.+|++|
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5789999999999999999999998777 55677777544  334444  377999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.++..+..|+..+.... ..+.|+++|+||+|+..+..                          .++     
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------------------~~~-----  139 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS--------------------------ASE-----  139 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC--------------------------HHH-----
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCC--------------------------HHH-----
Confidence            9999999999999999998887653 36899999999999862100                          000     


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                       +............+++++++||++|.|++++|++|.+.+.+++
T Consensus       140 -----------------i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~q  182 (183)
T 1moz_A          140 -----------------VSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ  182 (183)
T ss_dssp             -----------------HHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             -----------------HHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhcc
Confidence                             0000000001123468999999999999999999999887654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=7.3e-28  Score=201.38  Aligned_cols=176  Identities=25%  Similarity=0.507  Sum_probs=144.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            4568999999999999999999999888888888887555 456677888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.++..+. .|+..+.... .++|+++|+||+|+.....                             .....
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~-----------------------------~~~~~  281 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKD-----------------------------TIEKL  281 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHH-----------------------------HHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccc-----------------------------hhhhc
Confidence            999999999999987 7888887765 4899999999999862210                             00000


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                      .+   .  ..+.     +...+..++++.+++ +++++||++|.|++++|+.|.+.+..
T Consensus       282 ~~---~--~~~~-----v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          282 KE---K--KLTP-----ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             HH---T--TCCC-----CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             cc---c--cccc-----ccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence            00   0  0122     566778899999996 99999999999999999999998865

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.92  E-value=9.5e-31  Score=204.42  Aligned_cols=175  Identities=26%  Similarity=0.514  Sum_probs=139.4

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      ....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF  105 (204)
Confidence            35679999999999999999999998888877777776444 34455667778899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          86 MLVYDITNEKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      |+|||++++.++..+. .|+..+.... .++|+++|+||+|+...+..                             ..+
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~-----------------------------~~~  155 (204)
T 3th5_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT-----------------------------IEK  155 (204)
Confidence            9999999999999987 7888887655 48999999999999632110                             000


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                      ..+.     ..+.     +..++..++++.+++ +++++||++|.|++++|+.|.+.+
T Consensus       156 ~~~~-----~~~~-----v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          156 LKEK-----KLTP-----ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            0000     0011     455667788888887 999999999999999999998765

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.9e-28  Score=197.91  Aligned_cols=165  Identities=24%  Similarity=0.393  Sum_probs=125.6

Q ss_pred             ccCceeEEEEEcCC---------CCcHHHHHHHhhc---CCCCCcccCcc-ceeeEEEEEe--------------eCCeE
Q psy9621           5 TYDFLFKLLLIGDS---------GVGKTCVLFRFSD---DAFNTTFISTI-GIDFKIKTVD--------------LKGKK   57 (253)
Q Consensus         5 ~~~~~~ki~vvG~~---------~~GKStL~~~l~~---~~~~~~~~~~~-~~~~~~~~~~--------------~~~~~   57 (253)
                      +....+||+|+|++         |||||||+++|.+   ..+...+.++. +.++....+.              +++..
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            45678999999999         9999999999998   55655556654 4443322222              34567


Q ss_pred             EEEEEEe-----------------------CCCcccccccchhhhc---------------------CccEEEEEEeCCC
Q psy9621          58 IKLQIWD-----------------------TAGQERFHTITTSYYR---------------------GAMGIMLVYDITN   93 (253)
Q Consensus        58 ~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~~ilv~d~~~   93 (253)
                      +.+.+||                       ++|++.|..++..+++                     ++|++|+|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            8899999                       6777777777777777                     7999999999999


Q ss_pred             h--hhHHHHHHHHHHHHHh-cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhh
Q psy9621          94 E--KSFDNILKWLRNIDEH-ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE  170 (253)
Q Consensus        94 ~--~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      +  .+|+.+..|+..+... ...++|+++|+||+|+.                                           
T Consensus       175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~-------------------------------------------  211 (255)
T 3c5h_A          175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG-------------------------------------------  211 (255)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB-------------------------------------------
T ss_pred             CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc-------------------------------------------
Confidence            8  9999999999998776 34689999999999985                                           


Q ss_pred             hcCCCchhhhhhccchhHHHHHHH-hCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         171 HANEDPQVVNSWVCKHRGEAIARE-YGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                         ..+.     +  ++.+++++. .+++++++||++|.|++++|+.|.+.+.
T Consensus       212 ---~~~~-----v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          212 ---VERY-----I--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             ---CHHH-----H--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             ---ccHH-----H--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence               2121     2  356677766 4789999999999999999999998764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=4.4e-27  Score=177.58  Aligned_cols=153  Identities=17%  Similarity=0.220  Sum_probs=114.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc------cchhhhc--
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT------ITTSYYR--   80 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~--   80 (253)
                      .++|+++|++|||||||+++|.+..+.....++.+.+.....+.+.+  ..+.+|||||++.+..      +...+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            57999999999999999999998776555455544444444455544  5799999999987752      3355554  


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      +++++++|+|+++.+.   ...|+..+..   .++|+++|+||+|+...                               
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~-------------------------------  123 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKS-------------------------------  123 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHH-------------------------------
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccc-------------------------------
Confidence            8999999999988643   3457666654   47999999999998621                               


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                                     +.     +. .+.+++++.++++++++||++|.|++++|+.|.+.+
T Consensus       124 ---------------~~-----~~-~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          124 ---------------LG-----IE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             ---------------TT-----CC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             ---------------cC-----hh-hHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence                           11     22 236778888899999999999999999999998765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=2.6e-27  Score=186.12  Aligned_cols=185  Identities=18%  Similarity=0.184  Sum_probs=121.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCe-EEEEEEEeCCCcccccc-cchhhhcCccE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK-KIKLQIWDTAGQERFHT-ITTSYYRGAMG   84 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~   84 (253)
                      ...+||+|+|++|||||||+++|.++.+...+.++ +.++..  +.+++. .+.+.+|||||++.+.. ++..+++++|+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            45789999999999999999999998887776544 334433  555543 57899999999999987 78889999999


Q ss_pred             EEEEEeCCChh-hHHHHHHHHHHHHHh---cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          85 IMLVYDITNEK-SFDNILKWLRNIDEH---ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        85 ~ilv~d~~~~~-s~~~~~~~~~~i~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      +|+|||+++.. ++..+..|+..+...   ...++|+++|+||+|+...+.                          .+.
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------------------~~~  135 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS--------------------------AKL  135 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC--------------------------HHH
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc--------------------------HHH
Confidence            99999999854 465555544443322   235799999999999974322                          222


Q ss_pred             HHHHHHhhhhhc---------CCCchhhhhhccchhHHHHHHHh---CCceEEeeccCC------CCHHHHHHHHHHH
Q psy9621         161 ILKWLRNIDEHA---------NEDPQVVNSWVCKHRGEAIAREY---GVRFMETSAKAN------INIEKAFIELATA  220 (253)
Q Consensus       161 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~------~gi~~l~~~l~~~  220 (253)
                      ...++.+.....         ........+.+...+++.++...   ++++++|||++|      .||+++|++|.+.
T Consensus       136 ~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          136 IQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             HHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence            222222111100         00000000112233344455433   689999999999      9999999999875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=1.6e-27  Score=181.71  Aligned_cols=170  Identities=16%  Similarity=0.166  Sum_probs=122.3

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      .....+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++.  .+.+|||||++.+..++..++..+|+
T Consensus         4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~   81 (178)
T 2lkc_A            4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDI   81 (178)
T ss_dssp             TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCE
Confidence            4556789999999999999999999998888776666655555555666654  57899999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      +|+|||++++.....    +..+......++|+++|+||+|+...                           ..++...+
T Consensus        82 ~i~v~d~~~~~~~~~----~~~l~~~~~~~~p~ilv~nK~Dl~~~---------------------------~~~~~~~~  130 (178)
T 2lkc_A           82 VILVVAADDGVMPQT----VEAINHAKAANVPIIVAINKMDKPEA---------------------------NPDRVMQE  130 (178)
T ss_dssp             EEEEEETTCCCCHHH----HHHHHHHGGGSCCEEEEEETTTSSCS---------------------------CHHHHHHH
T ss_pred             EEEEEECCCCCcHHH----HHHHHHHHhCCCCEEEEEECccCCcC---------------------------CHHHHHHH
Confidence            999999988432222    12222223357999999999998621                           00111111


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYDKTSG  227 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  227 (253)
                      ..                    ....+++.++  ++++++||++|.|++++|++|.+.+......
T Consensus       131 ~~--------------------~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~  175 (178)
T 2lkc_A          131 LM--------------------EYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEELK  175 (178)
T ss_dssp             HT--------------------TTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred             HH--------------------hcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhccc
Confidence            00                    0111122233  6899999999999999999999988775543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=199.32  Aligned_cols=165  Identities=19%  Similarity=0.360  Sum_probs=121.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      ...+||+|+|++|||||||+++|..+.+... .||.+..+.  .+..  ..+.+.+|||||++.|..++..+++.+|++|
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3568999999999999999999998887654 467665543  2333  3477999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.+|..+..|+..+.... ..++|+++|+||+|+..+...                          .+     
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~--------------------------~~-----  286 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA--------------------------AE-----  286 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--------------------------HH-----
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCH--------------------------HH-----
Confidence            9999999999999998887775543 358999999999998622110                          00     


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                       +........++..+++++++||++|.||+++|+.|.+.+.++
T Consensus       287 -----------------i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          287 -----------------ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             -----------------HHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred             -----------------HHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHhc
Confidence                             111111111223356899999999999999999999987653

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=1.8e-27  Score=195.81  Aligned_cols=163  Identities=16%  Similarity=0.177  Sum_probs=121.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCC---cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc---cchhhhcCccE
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNT---TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT---ITTSYYRGAMG   84 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~   84 (253)
                      ||+++|+.|||||||++++.++.++.   .+.+|+|.++..  +  + ..+.+++|||+|+++|..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            79999999999999999887654433   256788877753  2  2 347899999999999964   46889999999


Q ss_pred             EEEEEeCCCh--hhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          85 IMLVYDITNE--KSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        85 ~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      +|+|||++++  +.+.....|+..+.... +++|++++|||+|+..+.                                
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~--------------------------------  122 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSED--------------------------------  122 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSH--------------------------------
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchh--------------------------------
Confidence            9999999998  33344444455554443 689999999999996210                                


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHH----hCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIARE----YGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                  .+...-+.+..++++++++.    +++++++|||++ .+|.++|..+++.+..+
T Consensus       123 ------------~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          123 ------------FKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             ------------HHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred             ------------hhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHhh
Confidence                        01111122556667778875    679999999998 59999999998876543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.94  E-value=6.3e-26  Score=180.15  Aligned_cols=168  Identities=18%  Similarity=0.140  Sum_probs=115.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc---------cccchh
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF---------HTITTS   77 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~   77 (253)
                      ...+||+|+|++|||||||+++|.+..+.....+....+.........  ...+.+|||||+...         ......
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            568999999999999999999999877653322221112222222222  367999999998321         111234


Q ss_pred             hhcCccEEEEEEeCCChhhHHH--HHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621          78 YYRGAMGIMLVYDITNEKSFDN--ILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE  155 (253)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (253)
                      ++..+|++|+|||++++.++..  ...|+..+.... .++|+++|+||+|+...                          
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~--------------------------  157 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNM--------------------------  157 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC---------------------------
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCc--------------------------
Confidence            5788999999999999887652  335666654432 47999999999999622                          


Q ss_pred             cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                          ...  .........+++...+  ++++++||++|.|++++|+.|.+.+.+..
T Consensus       158 --------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          158 --------------------DSL--SIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             ---------------------CC--CHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             --------------------hhh--HHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence                                110  0011234566777777  89999999999999999999999887654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=2.1e-26  Score=178.23  Aligned_cols=164  Identities=13%  Similarity=0.141  Sum_probs=110.1

Q ss_pred             ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCC----------ccccc
Q psy9621           3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG----------QERFH   72 (253)
Q Consensus         3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~   72 (253)
                      ..+....+||+|+|++|||||||+++|.+..+...+.++.+.+........+.   .+.+|||||          ++.+.
T Consensus        17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~   93 (195)
T 1svi_A           17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWG   93 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred             hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHH
Confidence            44566789999999999999999999998876665566666555444444433   589999999          66677


Q ss_pred             ccchhhhcCc---cEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEE
Q psy9621          73 TITTSYYRGA---MGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLV  149 (253)
Q Consensus        73 ~~~~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  149 (253)
                      .++..+++.+   |++++|+|++++.++.... ++..+..   .++|+++|+||+|+...                    
T Consensus        94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~--------------------  149 (195)
T 1svi_A           94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPK--------------------  149 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCG--------------------
T ss_pred             HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCh--------------------
Confidence            7777777776   9999999999987776643 2222222   57899999999998621                    


Q ss_pred             EeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHH-HHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         150 YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA-IAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                                                ....   ....+..+ ++...+.+++++||++|.|++++|++|.+.+.
T Consensus       150 --------------------------~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          150 --------------------------GKWD---KHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             --------------------------GGHH---HHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             --------------------------HHHH---HHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence                                      1100   00111222 33334679999999999999999999988764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=8.3e-26  Score=173.81  Aligned_cols=158  Identities=18%  Similarity=0.230  Sum_probs=122.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc------ccchhhhc-
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH------TITTSYYR-   80 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-   80 (253)
                      ..+||+|+|++|||||||+++|.+..+.....++...+.....+...+  ..+.+|||||++.+.      .+...+++ 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            568999999999999999999998766555556555555555555554  679999999998875      33455554 


Q ss_pred             -CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621          81 -GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD  159 (253)
Q Consensus        81 -~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (253)
                       .++++++|+|.++   ++....|+..+..   .+.|+++++||+|+...                              
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~------------------------------  127 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKS------------------------------  127 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHH------------------------------
T ss_pred             cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhcccc------------------------------
Confidence             5999999999875   5556677777654   47899999999998621                              


Q ss_pred             hHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         160 NILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                      ..     +. ...+++++.++++++++||+++.|++++|+.|.+.+....
T Consensus       128 ----------------~~-----~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          128 ----------------LG-----IE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             ----------------TT-----CC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             ----------------cc-----ch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence                            11     11 3567888889999999999999999999999999887654

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.94  E-value=7.6e-26  Score=187.29  Aligned_cols=166  Identities=18%  Similarity=0.288  Sum_probs=127.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCC---CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc-----cccchhhh
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFN---TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF-----HTITTSYY   79 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~   79 (253)
                      ..+||+++|++|||||||++++.++...   ..+.+|++.++..  +.+.+ .+.+.+|||||++.+     ..++..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4689999999999999999999876322   2456777766653  33333 678999999999988     77888899


Q ss_pred             cCccEEEEEEeCCChhhHHHHHHHHHHHHHhc--ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621          80 RGAMGIMLVYDITNEKSFDNILKWLRNIDEHA--NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS  157 (253)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (253)
                      +++|++|+|||++++.+++.+..|...+....  ..++|+++++||+|+....                           
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~---------------------------  131 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLD---------------------------  131 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHH---------------------------
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchh---------------------------
Confidence            99999999999999999999987765554432  2689999999999986210                           


Q ss_pred             hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC---CceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG---VRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                                       .+.. ...+...++.++++.+|   ++++++||++ .|+.++|..+++.+.
T Consensus       132 -----------------~r~~-~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          132 -----------------KREE-LFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             -----------------HHHH-HHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred             -----------------hhhH-HHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence                             0100 00034467788999987   7999999999 899999998877543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.93  E-value=3.6e-26  Score=175.97  Aligned_cols=156  Identities=19%  Similarity=0.296  Sum_probs=118.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCC-----------cccccccchhh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG-----------QERFHTITTSY   78 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~~~~   78 (253)
                      +||+|+|++|||||||+++|.+..+...+.++.....  ..+...    .+.+|||||           ++.+..++..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            6999999999999999999999888777666544333  333333    589999999           56666677777


Q ss_pred             hcC-ccEEEEEEeCCChhhHHHH-HHHHHH--------HHH-hcccccceeEEeeeeccccccccccccccccccceeeE
Q psy9621          79 YRG-AMGIMLVYDITNEKSFDNI-LKWLRN--------IDE-HANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIM  147 (253)
Q Consensus        79 ~~~-~d~~ilv~d~~~~~s~~~~-~~~~~~--------i~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (253)
                      ++. +++++++|++.+..++..+ ..|...        +.. ....++|+++|+||+|+..                   
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------------  136 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK-------------------  136 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCS-------------------
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccC-------------------
Confidence            777 8888888888888888776 566542        222 2235799999999999861                   


Q ss_pred             EEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCc-------eEEeeccCCCCHHHHHHHHHHH
Q psy9621         148 LVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVR-------FMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                                 ..        ....+++++.++.+       ++++||++|.|++++|++|.+.
T Consensus       137 ---------------------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  181 (190)
T 2cxx_A          137 ---------------------------NV--------QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEV  181 (190)
T ss_dssp             ---------------------------CH--------HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ---------------------------cH--------HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHh
Confidence                                       11        23466777777764       6999999999999999999999


Q ss_pred             HHhcc
Q psy9621         221 IYDKT  225 (253)
Q Consensus       221 ~~~~~  225 (253)
                      +.+.+
T Consensus       182 ~~~~~  186 (190)
T 2cxx_A          182 IRERQ  186 (190)
T ss_dssp             HHHC-
T ss_pred             cchhh
Confidence            87754

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=2.4e-26  Score=174.75  Aligned_cols=155  Identities=16%  Similarity=0.175  Sum_probs=113.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc--------hhh
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT--------TSY   78 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~   78 (253)
                      ..+||+|+|++|||||||+++|.+..+. ....++...++....+.+++.  .+.+|||||...+....        ..+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4579999999999999999999976542 222233344555566666653  48999999987543211        135


Q ss_pred             hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      ++.+|++|+|||++++.++. ...|+..+......++|+++|+||+|+..+                             
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-----------------------------  130 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGE-----------------------------  130 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCC-----------------------------
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcc-----------------------------
Confidence            78999999999999988876 357777777765567999999999998511                             


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                       ..            .+++..+.+++++||++|.|++++|+.|.+.+..
T Consensus       131 -----------------~~------------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          131 -----------------TL------------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             -----------------CC------------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred             -----------------hh------------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence                             00            0011235689999999999999999999887643

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.93  E-value=1.5e-25  Score=167.92  Aligned_cols=150  Identities=13%  Similarity=0.141  Sum_probs=104.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc-------cccchhhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF-------HTITTSYYRG   81 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~   81 (253)
                      +||+++|++|||||||++++.+..+. ....+....+.....+...+.  .+.+|||||+..+       ...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            69999999999999999999987643 222233333444445555543  6899999998873       3344567899


Q ss_pred             ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621          82 AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI  161 (253)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      +|++|+|+|++++.+...  .++..+...  .++|+++|+||+|+..+                                
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~--------------------------------  123 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKH--------------------------------  123 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGG--------------------------------
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccc--------------------------------
Confidence            999999999998644332  233332222  47999999999998621                                


Q ss_pred             HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                                             .+...+++ ++++ +++++||++|.|++++|++|.+.+
T Consensus       124 -----------------------~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          124 -----------------------ELYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             -----------------------GGGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             -----------------------hHhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence                                   11223344 5666 899999999999999999998764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.93  E-value=4e-25  Score=170.71  Aligned_cols=164  Identities=15%  Similarity=0.182  Sum_probs=116.6

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCC----------ccc
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG----------QER   70 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~   70 (253)
                      |...+....+||+|+|++|||||||+++|.+..+. .+.++.+.+........+   ..+.+|||||          ++.
T Consensus        15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~   90 (195)
T 3pqc_A           15 PGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERML   90 (195)
T ss_dssp             TTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHH
T ss_pred             hhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHH
Confidence            34556778899999999999999999999987733 334555544443333333   2478999999          556


Q ss_pred             ccccchhhhcCc---cEEEEEEeCCChhhH--HHHHHHHHHHHHhcccccceeEEeeeecccccccccccccccccccee
Q psy9621          71 FHTITTSYYRGA---MGIMLVYDITNEKSF--DNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMG  145 (253)
Q Consensus        71 ~~~~~~~~~~~~---d~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~  145 (253)
                      +..++..+++.+   +++++|+|+++..+.  ..+..|+..      .++|+++|+||+|+....               
T Consensus        91 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~---------------  149 (195)
T 3pqc_A           91 WKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMS---------------  149 (195)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGG---------------
T ss_pred             HHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChH---------------
Confidence            666677777665   999999999876433  333344433      279999999999986210               


Q ss_pred             eEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         146 IMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                                   ...     ...+...+++...+ ++++++||++|.|++++|++|.+.+.+
T Consensus       150 -----------------------------~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          150 -----------------------------ERA-----KKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             -----------------------------GHH-----HHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             -----------------------------HHH-----HHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence                                         011     23344556666644 799999999999999999999988754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.93  E-value=1.4e-24  Score=175.25  Aligned_cols=155  Identities=17%  Similarity=0.148  Sum_probs=117.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc------chhhh--
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI------TTSYY--   79 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~--   79 (253)
                      ..+||+|+|++|||||||+++|.+..+.....|...++.....+..  ....+.+|||||...+...      ...++  
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY--KGYTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE--CCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            4689999999999999999999987765444454443433333333  3467999999999877653      24555  


Q ss_pred             cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621          80 RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD  159 (253)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (253)
                      ..+|++|+|+|+++.++..   .|...+..   .++|+++++||+|+...                              
T Consensus        82 ~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~------------------------------  125 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKK------------------------------  125 (258)
T ss_dssp             SCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHH------------------------------
T ss_pred             cCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCc------------------------------
Confidence            5899999999999876543   35555543   47999999999998621                              


Q ss_pred             hHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         160 NILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                                      ..     +. ....++++.++++++++||++|.|++++|+.|.+.+.
T Consensus       126 ----------------~~-----i~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          126 ----------------TG-----MK-IDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             ----------------TT-----CC-BCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ----------------cc-----hH-HHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence                            11     22 2367889999999999999999999999999998765

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.92  E-value=4.7e-26  Score=202.06  Aligned_cols=165  Identities=22%  Similarity=0.289  Sum_probs=123.1

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEE------Eee--CCeEEEEEEEeCCCcccccccchh
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKT------VDL--KGKKIKLQIWDTAGQERFHTITTS   77 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~l~Dt~G~~~~~~~~~~   77 (253)
                      ....+||+++|.+|||||||++++.+..+...+.++.+.++....      +.+  .+..+.+.+|||||++.+..+...
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            456799999999999999999999999988888899988776542      222  234578999999999999999999


Q ss_pred             hhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621          78 YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS  157 (253)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (253)
                      +++.+|++|+|||+++.   +.+..|+..+..+. .+.|+++|+||+|+.                              
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~------------------------------  163 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDEN------------------------------  163 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTC------------------------------
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcc------------------------------
Confidence            99999999999999765   45667888887775 579999999999987                              


Q ss_pred             hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                      ....     +..+..++++...+.+++++||++|.|++++|+.|.+.+....
T Consensus       164 ----------------~~~~-----v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          164 ----------------PSYN-----IEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPD  210 (535)
T ss_dssp             ----------------TTCC-----CCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred             ----------------cccc-----cCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhccc
Confidence                            2222     4455677777888899999999999999999999999887644

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.92  E-value=5.2e-25  Score=178.89  Aligned_cols=154  Identities=19%  Similarity=0.183  Sum_probs=115.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc------ccchhhhc-
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH------TITTSYYR-   80 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-   80 (253)
                      ..+||+++|++|||||||+++|.+........|  |.++......+.. ...+.+|||||+..+.      .+...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            468999999999999999999998764443334  3334334444554 5679999999998775      34455665 


Q ss_pred             -CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621          81 -GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD  159 (253)
Q Consensus        81 -~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (253)
                       .+|++|+|+|+++.++.   ..|...+..   .++|+++++||+|+...                              
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~------------------------------  122 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDG------------------------------  122 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHH------------------------------
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCc------------------------------
Confidence             69999999999886544   345555544   47999999999998621                              


Q ss_pred             hHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         160 NILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                                      ..     +. .....+++.++++++++||++|.|++++|+.|.+.+.
T Consensus       123 ----------------~~-----~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          123 ----------------QG-----KK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             ----------------TT-----CC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred             ----------------CC-----cH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence                            11     22 3467888899999999999999999999999987653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.92  E-value=6e-25  Score=177.21  Aligned_cols=151  Identities=17%  Similarity=0.125  Sum_probs=117.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc----------cchhhh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT----------ITTSYY   79 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~   79 (253)
                      .||+++|.+|||||||+++|.+..+.....|....+.....+.+.+.  .+.+|||||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999988766555666666666666666654  799999999977754          345566


Q ss_pred             --cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621          80 --RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS  157 (253)
Q Consensus        80 --~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (253)
                        ..+|++|+|+|+++.++...+..++.      ..++|+++++||+|+...                            
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~----------------------------  125 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEH----------------------------  125 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHH----------------------------
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCc----------------------------
Confidence              89999999999998766555444332      247999999999998622                            


Q ss_pred             hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                        ..     . ......+++.++++++++||++|.|++++|+.|.+.
T Consensus       126 ------------------~~-----~-~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          126 ------------------RG-----I-SIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             ------------------TT-----C-EECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             ------------------CC-----c-HHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence                              11     1 123566888899999999999999999999999887

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.92  E-value=4.1e-24  Score=176.91  Aligned_cols=166  Identities=12%  Similarity=0.035  Sum_probs=123.3

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCe-EEEEEEEeCCCccccc----------c
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK-KIKLQIWDTAGQERFH----------T   73 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~----------~   73 (253)
                      +..+.-.|+++|.+|||||||+|+|++..+..... ..+.+........... ..++.+|||||...+.          .
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~-~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISP-KAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCC-CCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence            45567799999999999999999999887653311 1122222121112222 5679999999986654          4


Q ss_pred             cchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEecc
Q psy9621          74 ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDIT  153 (253)
Q Consensus        74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (253)
                      ....+++.+|++++|+|++++.+......|++.+..   .++|+++|+||+|+.                          
T Consensus        85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~--------------------------  135 (308)
T 3iev_A           85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKI--------------------------  135 (308)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGS--------------------------
T ss_pred             HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCC--------------------------
Confidence            456778999999999999999888887777777655   469999999999985                          


Q ss_pred             CccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         154 NEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                          ....     ........+.+.++  .+++++||++|.|++++|+.|.+.+....
T Consensus       136 --------------------~~~~-----~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~  184 (308)
T 3iev_A          136 --------------------GPAK-----NVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGE  184 (308)
T ss_dssp             --------------------SSGG-----GGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred             --------------------CCHH-----HHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCC
Confidence                                1222     33345566777765  78999999999999999999999886543

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.92  E-value=1.2e-24  Score=171.89  Aligned_cols=171  Identities=11%  Similarity=0.063  Sum_probs=112.2

Q ss_pred             CccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCc----------cc
Q psy9621           2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQ----------ER   70 (253)
Q Consensus         2 ~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~----------~~   70 (253)
                      ...+....++|+|+|.+|||||||+++|++........+..+.+.......+. .....+.+|||||.          +.
T Consensus        22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~  101 (223)
T 4dhe_A           22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH  101 (223)
T ss_dssp             GGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred             hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence            44566778999999999999999999999876322222333333333333333 34467999999995          33


Q ss_pred             ccccchhhhcC---ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeE
Q psy9621          71 FHTITTSYYRG---AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIM  147 (253)
Q Consensus        71 ~~~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (253)
                      +..+...+++.   +|++|+|+|++++.+.. ...|+..+..   .++|+++|+||+|+...+..               
T Consensus       102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~---------------  162 (223)
T 4dhe_A          102 WEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQES---------------  162 (223)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHH---------------
T ss_pred             HHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhH---------------
Confidence            34555566655   88899999998754422 2344444433   57899999999998621100               


Q ss_pred             EEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHH-HHHHH------hCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         148 LVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE-AIARE------YGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                    .                    ....... .+...      .+.+++++||++|.|++++|+.|.+.
T Consensus       163 --------------~--------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  208 (223)
T 4dhe_A          163 --------------I--------------------NALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESW  208 (223)
T ss_dssp             --------------H--------------------HHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             --------------H--------------------HHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHh
Confidence                          0                    0011111 22221      45799999999999999999999998


Q ss_pred             HHhcc
Q psy9621         221 IYDKT  225 (253)
Q Consensus       221 ~~~~~  225 (253)
                      +....
T Consensus       209 ~~~~~  213 (223)
T 4dhe_A          209 LRPAA  213 (223)
T ss_dssp             HC---
T ss_pred             cCccC
Confidence            86543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.91  E-value=1e-23  Score=171.70  Aligned_cols=158  Identities=18%  Similarity=0.150  Sum_probs=121.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc------cchhhh--c
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT------ITTSYY--R   80 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~   80 (253)
                      .+||+++|++|||||||+++|.+..+.....++.+.+.....+...+.  .+.+|||||...+..      ....++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            689999999999999999999988776566666666666666666554  499999999987765      445555  6


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      .+|++|+|+|+++..   ....|...+...  ..+|+++++||+|+...                               
T Consensus        81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~-------------------------------  124 (271)
T 3k53_A           81 NADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKK-------------------------------  124 (271)
T ss_dssp             CCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHH-------------------------------
T ss_pred             CCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcc-------------------------------
Confidence            899999999998863   223344444332  23999999999998621                               


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                     ..     .. .....+++.++++++++||++|.|++++|..+.+.+....
T Consensus       125 ---------------~~-----~~-~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          125 ---------------KG-----AK-IDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGKV  168 (271)
T ss_dssp             ---------------HT-----CC-CCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHTCC
T ss_pred             ---------------cc-----cH-HHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhccc
Confidence                           11     11 1367888899999999999999999999999999876543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.91  E-value=2.4e-24  Score=175.50  Aligned_cols=155  Identities=15%  Similarity=0.145  Sum_probs=116.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc----------chhh
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI----------TTSY   78 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~~   78 (253)
                      .++|+++|.+|||||||+++|.+..+.....+....+.....+...+  ..+.+|||||...+...          ...+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            58999999999999999999998876555556555555555555554  45889999999876632          2223


Q ss_pred             --hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCcc
Q psy9621          79 --YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEK  156 (253)
Q Consensus        79 --~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (253)
                        .+.+|++|+|+|+++.++...+..++.+      .++|+++|+||+|+...                           
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~------~~~p~ivv~NK~Dl~~~---------------------------  127 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYLTLQLLE------LGIPCIVALNMLDIAEK---------------------------  127 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHHHHHHHH------HTCCEEEEEECHHHHHH---------------------------
T ss_pred             HhhcCCCEEEEEecCCChHHHHHHHHHHHh------cCCCEEEEEECccchhh---------------------------
Confidence              2799999999999986655444444333      27999999999998621                           


Q ss_pred             chhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         157 SFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                         ..     . ......+++.++++++++||++|.|++++|+.|.+.+..
T Consensus       128 -------------------~~-----~-~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~~  169 (274)
T 3i8s_A          128 -------------------QN-----I-RIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKAN  169 (274)
T ss_dssp             -------------------TT-----E-EECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCCC
T ss_pred             -------------------hh-----H-HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence                               11     1 123577888899999999999999999999998876544

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=2e-25  Score=175.85  Aligned_cols=119  Identities=17%  Similarity=0.291  Sum_probs=94.2

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc---ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchh
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT---FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTS   77 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   77 (253)
                      |........+||+|+|++|||||||+++|.+..+...   +.++.+.++         ....+.+|||||++.+...+..
T Consensus         4 ~~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~   74 (218)
T 1nrj_B            4 MGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSD   74 (218)
T ss_dssp             ------CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHH
T ss_pred             CCCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHH
Confidence            4555677889999999999999999999998776542   334333222         4457999999999999888888


Q ss_pred             hhcC----ccEEEEEEeCC-ChhhHHHHHHHHHHHHHhc----ccccceeEEeeeecccc
Q psy9621          78 YYRG----AMGIMLVYDIT-NEKSFDNILKWLRNIDEHA----NEDVEKMILGKTKDTAG  128 (253)
Q Consensus        78 ~~~~----~d~~ilv~d~~-~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~D~~~  128 (253)
                      +++.    ++++|+|||++ ++.++..+..|+..+....    ..++|+++|+||+|+..
T Consensus        75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  134 (218)
T 1nrj_B           75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  134 (218)
T ss_dssp             HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence            8887    89999999999 8899999999988887653    36899999999999973

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.89  E-value=7.9e-24  Score=181.23  Aligned_cols=164  Identities=13%  Similarity=0.109  Sum_probs=115.3

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc----
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT----   75 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----   75 (253)
                      |...+....+||+|+|+.|+|||||+++|++..+.. ...+....+.....+.+... ..+.+|||||+..+..+.    
T Consensus        26 m~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~  104 (423)
T 3qq5_A           26 MRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRV  104 (423)
T ss_dssp             CCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCH
T ss_pred             cccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHH
Confidence            455677889999999999999999999999877632 22233333444455555543 369999999998876552    


Q ss_pred             ---hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621          76 ---TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI  152 (253)
Q Consensus        76 ---~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (253)
                         ..+++.+|++|+|+|++...   ....|+..+...   ++|+++|+||+|+.                         
T Consensus       105 ~~~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~-------------------------  153 (423)
T 3qq5_A          105 EKARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVL-------------------------  153 (423)
T ss_dssp             HHHHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTT-------------------------
T ss_pred             HHHHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCC-------------------------
Confidence               44788999999999984332   334566666553   79999999999986                         


Q ss_pred             cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                           ....       .+..+++++.++++++++||++|.|++++|+.|.+.+.+.
T Consensus       154 ---------------------~~~~-------~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          154 ---------------------GEKA-------EELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             ---------------------TCCC-------THHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             ---------------------CccH-------HHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence                                 2221       1345566667789999999999999999999999988655

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.89  E-value=4.1e-23  Score=178.76  Aligned_cols=167  Identities=13%  Similarity=0.091  Sum_probs=112.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCc----------ccccccc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ----------ERFHTIT   75 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~   75 (253)
                      +..+||+++|++|||||||+++|++.... ....+....+.....+..++.  .+.+|||||+          +.|..++
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            45799999999999999999999987653 222233333443344555554  4899999997          3343333


Q ss_pred             h-hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621          76 T-SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN  154 (253)
Q Consensus        76 ~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (253)
                      . .+++.+|++|+|+|++++.+++.. .|+..+..   .+.|+++|+||+|+..                          
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~--------------------------  300 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVD--------------------------  300 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSC--------------------------
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCC--------------------------
Confidence            3 478899999999999998887775 46666543   5799999999999862                          


Q ss_pred             ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                          .+............+.++...+++++++||++|.|++++|+.+.+.+....
T Consensus       301 --------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          301 --------------------KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             --------------------CCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             --------------------cchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence                                111000001111112222223589999999999999999999998887644

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.89  E-value=1.3e-22  Score=167.23  Aligned_cols=161  Identities=14%  Similarity=0.134  Sum_probs=107.9

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc-ccCccceeeEEEEEeeCCeEEEEEEEeCCCccc--------c
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT-FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER--------F   71 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~   71 (253)
                      |+..  -...+|+++|.+|||||||+|+|++..+... ..+....+.....+  .....++.+|||||...        +
T Consensus         1 m~~~--~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~--~~~~~~l~l~DTpG~~~~~~~l~~~~   76 (301)
T 1wf3_A            1 MAEK--TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGIL--TEGRRQIVFVDTPGLHKPMDALGEFM   76 (301)
T ss_dssp             --CC--CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE--EETTEEEEEEECCCCCCCCSHHHHHH
T ss_pred             CCCC--ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEE--EeCCcEEEEecCccccchhhHHHHHH
Confidence            5553  3456899999999999999999998876532 22211111111112  22356799999999876        3


Q ss_pred             cccchhhhcCccEEEEEEeCCChhhHHHHHHHH-HHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEE
Q psy9621          72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWL-RNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVY  150 (253)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~-~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  150 (253)
                      ......+++.+|++++|+|++++.+..  ..|+ ..+.... .+.|+++|+||+|+..                      
T Consensus        77 ~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~----------------------  131 (301)
T 1wf3_A           77 DQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAK----------------------  131 (301)
T ss_dssp             HHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCS----------------------
T ss_pred             HHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCC----------------------
Confidence            344556789999999999999875543  3444 3444332 4799999999999861                      


Q ss_pred             eccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH-hC-CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         151 DITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE-YG-VRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                              ...     .    ..+..+. .+ .+++++||++|.|++++++.|.+.+..
T Consensus       132 ------------------------~~~-----~----~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          132 ------------------------YPE-----E----AMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPE  173 (301)
T ss_dssp             ------------------------SHH-----H----HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             ------------------------chH-----H----HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence                                    111     0    1111222 23 478999999999999999999887654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.88  E-value=1.2e-21  Score=165.52  Aligned_cols=162  Identities=14%  Similarity=0.161  Sum_probs=117.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc---------cchh
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT---------ITTS   77 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------~~~~   77 (253)
                      ...++|+++|++|||||||+++|.+..+.....+....+.....+...  ...+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            456899999999999999999999876432222211112222222222  35699999999854321         1123


Q ss_pred             hhcCccEEEEEEeCCChh--hHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621          78 YYRGAMGIMLVYDITNEK--SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE  155 (253)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (253)
                      +...+|++++|+|++++.  +++....|+..+..... +.|+++|+||+|+..                           
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~---------------------------  294 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVAD---------------------------  294 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCC---------------------------
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCC---------------------------
Confidence            445799999999999887  68888889988877653 899999999999861                           


Q ss_pred             cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                         ...     +  +...++++..+++++++||++|+|+++++++|.+.+...
T Consensus       295 -------------------~~~-----~--~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          295 -------------------EEN-----I--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             -------------------HHH-----H--HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             -------------------hHH-----H--HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence                               111     1  234556667789999999999999999999999887553

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.88  E-value=1.1e-22  Score=169.86  Aligned_cols=158  Identities=16%  Similarity=0.210  Sum_probs=117.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCc-c-cCccceeeEEEEEeeCCeEEEEEEEeCCCcc----cccccchhhhcC--
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTT-F-ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE----RFHTITTSYYRG--   81 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~~~--   81 (253)
                      .+|+|+|.+|||||||+++|+....... + ..|..  .....+.+.+ ...+.+|||||..    ++..+...|++.  
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~--p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~  235 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLV--PNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE  235 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCC--CCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccC--ceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence            3689999999999999999997654321 1 12222  2222344443 2469999999963    455566666554  


Q ss_pred             -ccEEEEEEeCCC---hhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621          82 -AMGIMLVYDITN---EKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE  155 (253)
Q Consensus        82 -~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (253)
                       ++++|+|+|+++   +.+++.+..|+.++..+..  .++|+++|+||+|+..                           
T Consensus       236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~---------------------------  288 (342)
T 1lnz_A          236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE---------------------------  288 (342)
T ss_dssp             HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT---------------------------
T ss_pred             hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC---------------------------
Confidence             999999999998   7889999999999887642  5799999999999861                           


Q ss_pred             cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                                  ..+..+++++.+.  .+++++||+++.|+++++..|.+.+.+..
T Consensus       289 ----------------------------~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~  332 (342)
T 1lnz_A          289 ----------------------------AAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP  332 (342)
T ss_dssp             ----------------------------HHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred             ----------------------------CHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCc
Confidence                                        1123455666665  78999999999999999999999886543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.88  E-value=4.2e-22  Score=173.24  Aligned_cols=157  Identities=15%  Similarity=0.100  Sum_probs=97.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc--------hhh
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT--------TSY   78 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~   78 (253)
                      ..+||+|+|++|||||||+|+|.+.... ....+....+.....+.+++  ..+.+|||||..++...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            4589999999999999999999986432 22233333344444555554  569999999987765443        336


Q ss_pred             hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      ++.+|++|+|+|++++.++..+..+...+.. . .+.|+++|+||+|+.                               
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l-~~~piIvV~NK~Dl~-------------------------------  356 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAA-H-PAAKFLTVANKLDRA-------------------------------  356 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-C-TTSEEEEEEECTTSC-------------------------------
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHh-c-CCCCEEEEEECcCCC-------------------------------
Confidence            7899999999999998877543333222222 2 279999999999986                               


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                                     ....     .   ..+++.+....+++++||++|.|++++|+.|.+.+.
T Consensus       357 ---------------~~~~-----~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          357 ---------------ANAD-----A---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             ---------------TTTH-----H---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             ---------------Cccc-----h---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence                           2221     1   113344433478999999999999999999999887

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=9.9e-22  Score=170.25  Aligned_cols=176  Identities=18%  Similarity=0.255  Sum_probs=112.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc---------cccchhhh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF---------HTITTSYY   79 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~   79 (253)
                      .+|+++|.+|||||||+|+|.+.... ....+.+..+.....+.+.+.  .+.+|||||.+..         ......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999987643 222333333444455556654  5899999997642         33456688


Q ss_pred             cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621          80 RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD  159 (253)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (253)
                      +.+|++|+|+|++++.+...  .++..+.+.  .++|+++|+||+|+..                               
T Consensus        80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~-------------------------------  124 (439)
T 1mky_A           80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLR-------------------------------  124 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHH-------------------------------
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCcc-------------------------------
Confidence            99999999999987655433  222222222  3789999999999751                               


Q ss_pred             hHHHHHHhhhhhcCCCchhhhhhccchhH-HHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhccCC-CC--CCCCC
Q psy9621         160 NILKWLRNIDEHANEDPQVVNSWVCKHRG-EAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKTSG-RD--PLEAP  234 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~-~~--~~~~~  234 (253)
                                     .       . .... .++. .+++ +++++||++|.|++++|+.+.+.+.+.... ..  .....
T Consensus       125 ---------------~-------~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~  180 (439)
T 1mky_A          125 ---------------E-------F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDA  180 (439)
T ss_dssp             ---------------H-------H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSC
T ss_pred             ---------------c-------c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccC
Confidence                           0       0 0111 2333 4565 789999999999999999999988754311 11  12223


Q ss_pred             CeEeecCCCCCC
Q psy9621         235 DRVTIDKKPDRG  246 (253)
Q Consensus       235 ~~~~~~~~~~~~  246 (253)
                      .++.+-..++.|
T Consensus       181 ~kvaivG~~gvG  192 (439)
T 1mky_A          181 IKVAIVGRPNVG  192 (439)
T ss_dssp             EEEEEECSTTSS
T ss_pred             ceEEEECCCCCC
Confidence            455555555555

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.87  E-value=4.1e-22  Score=173.44  Aligned_cols=164  Identities=15%  Similarity=0.111  Sum_probs=113.5

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCC-CCcccCccceeeEEEEEeeCCeEEEEEEEeCCC----------ccccccc
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAF-NTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG----------QERFHTI   74 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~   74 (253)
                      .+..+||+++|.+|+|||||+++|.+... .....++...+.....+..++.  .+.+|||||          ++.|..+
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            35679999999999999999999996542 2222233333333344445544  699999999          5666655


Q ss_pred             ch-hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEecc
Q psy9621          75 TT-SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDIT  153 (253)
Q Consensus        75 ~~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (253)
                      +. .+++.+|++|+|+|+++..+- ....|...+..   .+.|+++|+||+|+.                          
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~NK~Dl~--------------------------  319 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVVNKWDAV--------------------------  319 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGS--------------------------
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEEEChhcC--------------------------
Confidence            54 378899999999999875442 22345555443   479999999999987                          


Q ss_pred             CccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh-----CCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         154 NEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY-----GVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                          ..+.     ...++..+.+++.     +++++++||++|.|++++|+.+.+.+.....
T Consensus       320 --------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          320 --------------------DKDE-----STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             --------------------CCCS-----SHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             --------------------CCch-----HHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence                                2222     2233334444443     4799999999999999999999998866543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.87  E-value=4.4e-21  Score=164.43  Aligned_cols=163  Identities=14%  Similarity=0.112  Sum_probs=115.3

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEe---------------------e---CCeEEE
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVD---------------------L---KGKKIK   59 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~---~~~~~~   59 (253)
                      ......+||+++|++|+|||||+++|.+......    .+  +...+..                     .   ......
T Consensus         3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (403)
T 3sjy_A            3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK----LG--YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRR   76 (403)
T ss_dssp             CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS----SE--EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEE
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCcccccc----cC--ccccceeeccccccccceecccccccccccccccccce
Confidence            3456789999999999999999999987433221    11  1111110                     0   112367


Q ss_pred             EEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccc
Q psy9621          60 LQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSY  139 (253)
Q Consensus        60 ~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~  139 (253)
                      +.+|||||++.|......++..+|++|+|+|+++..++.....++..+....  ..|+++++||+|+...+         
T Consensus        77 ~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~---------  145 (403)
T 3sjy_A           77 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKE---------  145 (403)
T ss_dssp             EEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHH---------
T ss_pred             EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchH---------
Confidence            9999999999999888889999999999999998876777777776665442  35899999999986210         


Q ss_pred             cccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh---CCceEEeeccCCCCHHHHHHH
Q psy9621         140 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY---GVRFMETSAKANINIEKAFIE  216 (253)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~  216 (253)
                                          ....+                    .++..++.+..   +++++++||++|.|+++|++.
T Consensus       146 --------------------~~~~~--------------------~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~  185 (403)
T 3sjy_A          146 --------------------EALSQ--------------------YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEG  185 (403)
T ss_dssp             --------------------HHHHH--------------------HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHH
T ss_pred             --------------------HHHHH--------------------HHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHH
Confidence                                00001                    11122222222   478999999999999999999


Q ss_pred             HHHHHHh
Q psy9621         217 LATAIYD  223 (253)
Q Consensus       217 l~~~~~~  223 (253)
                      |.+.+..
T Consensus       186 l~~~l~~  192 (403)
T 3sjy_A          186 IEEYIKT  192 (403)
T ss_dssp             HHHHSCC
T ss_pred             HHHhCCC
Confidence            9887643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.87  E-value=1.2e-22  Score=175.88  Aligned_cols=176  Identities=11%  Similarity=0.089  Sum_probs=111.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc--------cccccchhhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE--------RFHTITTSYYR   80 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~   80 (253)
                      ..+|+++|.+|||||||+++|.+..+... .++.|++..............+.+|||||.+        .+......+++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            36899999999999999999998665422 3444554444444444445679999999985        45566677899


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      .+|++|+|+|++++.+...  .++..+.+  ..+.|+++|+||+|+...                               
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~-------------------------------  126 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEM-------------------------------  126 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC----------------------------------
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccc-------------------------------
Confidence            9999999999998766544  33333333  257899999999998621                               


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEee
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTI  239 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  239 (253)
                                     ..         ...++. .+++ +++++||++|.|++++++.+.+.+.+.... ...+...++.+
T Consensus       127 ---------------~~---------~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~-~~~~~~~ki~l  180 (436)
T 2hjg_A          127 ---------------RA---------NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPET-KYNEEVIQFCL  180 (436)
T ss_dssp             --------------------------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSS-CCCTTCEEEEE
T ss_pred             ---------------hh---------hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccc-cccccCcEEEE
Confidence                           10         001111 2354 789999999999999999999888653211 11223346666


Q ss_pred             cCCCCCC
Q psy9621         240 DKKPDRG  246 (253)
Q Consensus       240 ~~~~~~~  246 (253)
                      -..++-|
T Consensus       181 vG~~nvG  187 (436)
T 2hjg_A          181 IGRPNVG  187 (436)
T ss_dssp             ECSTTSS
T ss_pred             EcCCCCC
Confidence            6666655

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.86  E-value=2.2e-21  Score=155.04  Aligned_cols=172  Identities=14%  Similarity=0.152  Sum_probs=108.7

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccC--ccceeeEEEEEeeCCeEEEEEEEeCCCcc-----------c
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFIS--TIGIDFKIKTVDLKGKKIKLQIWDTAGQE-----------R   70 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----------~   70 (253)
                      .+....+||+|+|++|||||||+++|++..+.....+  +...+.....+.+.+  ..+.+|||||..           .
T Consensus        24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~  101 (239)
T 3lxx_A           24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKE  101 (239)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHH
Confidence            4556789999999999999999999998877655444  233333333444444  468999999953           3


Q ss_pred             ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEE
Q psy9621          71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIML  148 (253)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  148 (253)
                      +......+.+++|++|+|+|+++...  ....|+..+.....  ...|+++|+||+|+...+..+..             
T Consensus       102 ~~~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~-------------  166 (239)
T 3lxx_A          102 IIRCILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDY-------------  166 (239)
T ss_dssp             HHHHHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------------
T ss_pred             HHHHHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHH-------------
Confidence            33444455678899999999876443  12233333333221  34699999999998632111000             


Q ss_pred             EEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCC-----CCHHHHHHHHHHHHHh
Q psy9621         149 VYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKAN-----INIEKAFIELATAIYD  223 (253)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-----~gi~~l~~~l~~~~~~  223 (253)
                                                 -.     ...+..+.+.+..+..++..+...+     .++.+||..+..++.+
T Consensus       167 ---------------------------i~-----~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          167 ---------------------------LR-----EAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------HH-----hchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence                                       00     1124577888888888887776643     6899999999888765


Q ss_pred             c
Q psy9621         224 K  224 (253)
Q Consensus       224 ~  224 (253)
                      .
T Consensus       215 ~  215 (239)
T 3lxx_A          215 N  215 (239)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.86  E-value=6.3e-21  Score=154.19  Aligned_cols=173  Identities=13%  Similarity=0.174  Sum_probs=107.0

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCC-CCCcccCc-cceeeEEEEEeeCCeEEEEEEEeCCCcccccccch------
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDA-FNTTFIST-IGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITT------   76 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~------   76 (253)
                      +....+||+|+|++|||||||+++|++.. +...+.++ ...+.....+...+  ..+.+|||||+..+.....      
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence            44567999999999999999999999876 44333333 33333333444443  4699999999876543322      


Q ss_pred             -----hhhcCccEEEEEEeCCChhhH-HHHHHHHHHHHHhcccccceeEEee-eeccccccccccccccccccceeeEEE
Q psy9621          77 -----SYYRGAMGIMLVYDITNEKSF-DNILKWLRNIDEHANEDVEKMILGK-TKDTAGQERFHTITTSYYRGAMGIMLV  149 (253)
Q Consensus        77 -----~~~~~~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~iiv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~  149 (253)
                           .+++.+|++|+|+|+++.... ..+..++..+.... ...|.++++| |+|+.+..                   
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~~-------------------  155 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGGS-------------------  155 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTCC-------------------
T ss_pred             HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCcc-------------------
Confidence                 267899999999999863222 22223444332221 1345555555 99986210                   


Q ss_pred             EeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCc---e--EEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         150 YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVR---F--METSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                 +..+...               ........+.+..+..   +  +++||++|.|++++|..|...+..+
T Consensus       156 -----------~~~~i~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          156 -----------LMDYMHD---------------SDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             -----------HHHHHHH---------------CCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -----------HHHHHHh---------------cchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence                       0000000               1112334455555422   2  7899999999999999999988765


Q ss_pred             c
Q psy9621         225 T  225 (253)
Q Consensus       225 ~  225 (253)
                      .
T Consensus       210 ~  210 (260)
T 2xtp_A          210 N  210 (260)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.86  E-value=3.8e-21  Score=166.31  Aligned_cols=121  Identities=13%  Similarity=0.070  Sum_probs=81.3

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCC--CC-----------------------------CcccCccceeeEEEEEee
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDA--FN-----------------------------TTFISTIGIDFKIKTVDL   53 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~   53 (253)
                      +....+||+++|++++|||||+++|+...  +.                             ....+.+.++..  ...+
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~--~~~~   90 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVG--RAYF   90 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEe--EEEE
Confidence            44567999999999999999999995431  11                             111122233333  3333


Q ss_pred             CCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhh---HHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          54 KGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS---FDNILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        54 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                      ......+.+|||||+++|......++..+|++|+|+|+++...   |+...++.+.+......++| +++++||+|+.
T Consensus        91 ~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~  168 (439)
T 3j2k_7           91 ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP  168 (439)
T ss_pred             ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCc
Confidence            3344679999999999998888888999999999999988532   21111222222222224677 99999999985

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.86  E-value=2.4e-21  Score=172.37  Aligned_cols=161  Identities=19%  Similarity=0.237  Sum_probs=111.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCC--CCC-----cc------cCccceeeEEEEEee-----CCeEEEEEEEeCCCc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDA--FNT-----TF------ISTIGIDFKIKTVDL-----KGKKIKLQIWDTAGQ   68 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~--~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~   68 (253)
                      +...||+++|+.++|||||+++|+...  ...     .+      .+..|++.......+     ++..+.+++|||||+
T Consensus         2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh   81 (599)
T 3cb4_D            2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH   81 (599)
T ss_dssp             TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence            457899999999999999999998521  110     00      012233333222222     445688999999999


Q ss_pred             ccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEE
Q psy9621          69 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIML  148 (253)
Q Consensus        69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  148 (253)
                      ..|...+..+++.+|++|+|+|+++..+.+....|.....    .++|+++++||+|+..+                   
T Consensus        82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a-------------------  138 (599)
T 3cb4_D           82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAA-------------------  138 (599)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTC-------------------
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCcccc-------------------
Confidence            9999999999999999999999999877777777765542    47899999999998621                   


Q ss_pred             EEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         149 VYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                                 .       ......++.+.+++   +++++||++|.|++++++.|.+.+...
T Consensus       139 ---------------------------~-------~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          139 ---------------------------D-------PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             ---------------------------C-------HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             ---------------------------c-------HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence                                       1       11123445555554   489999999999999999999887653

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.85  E-value=2.9e-21  Score=168.07  Aligned_cols=153  Identities=18%  Similarity=0.205  Sum_probs=109.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc-cccc--------cchhh
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE-RFHT--------ITTSY   78 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~~--------~~~~~   78 (253)
                      .++|+++|.+|||||||+|+|.+.... ....+....+.....+.+++  ..+.+|||||.. ++..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            489999999999999999999986532 22233333344445555654  458999999987 6542        12457


Q ss_pred             hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      ++.+|++|+|+|++++.+++... +++.+     .+.|+++|+||+|+.                               
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~-------------------------------  363 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVV-------------------------------  363 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSC-------------------------------
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccc-------------------------------
Confidence            88999999999999988776533 22322     478999999999986                               


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                     ..       ...++..++. ..+.+++++||++|.|++++++.|.+.+..
T Consensus       364 ---------------~~-------~~~~~~~~~~-~~~~~~i~iSAktg~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          364 ---------------EK-------INEEEIKNKL-GTDRHMVKISALKGEGLEKLEESIYRETQE  405 (482)
T ss_dssp             ---------------CC-------CCHHHHHHHH-TCSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred             ---------------cc-------cCHHHHHHHh-cCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence                           11       1111222222 134689999999999999999999997653

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.85  E-value=8e-21  Score=168.69  Aligned_cols=163  Identities=18%  Similarity=0.253  Sum_probs=114.1

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcC--CCCC-----ccc------CccceeeEE--EEEee---CCeEEEEEEEeCC
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDD--AFNT-----TFI------STIGIDFKI--KTVDL---KGKKIKLQIWDTA   66 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~--~~~~-----~~~------~~~~~~~~~--~~~~~---~~~~~~~~l~Dt~   66 (253)
                      +.+...||+++|+.++|||||+++|+..  .+..     ...      ...|++...  ..+.+   ++..+.+++||||
T Consensus         2 ~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTP   81 (600)
T 2ywe_A            2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTP   81 (600)
T ss_dssp             CGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCC
T ss_pred             CccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECC
Confidence            3467889999999999999999999752  1110     000      011222211  11212   3456889999999


Q ss_pred             CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceee
Q psy9621          67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGI  146 (253)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  146 (253)
                      |+.+|...+..+++.+|++|+|+|+++..+.+....|.....    .++|+++++||+|+..+                 
T Consensus        82 Gh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a-----------------  140 (600)
T 2ywe_A           82 GHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSA-----------------  140 (600)
T ss_dssp             CSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTC-----------------
T ss_pred             CcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCcccc-----------------
Confidence            999999888889999999999999999888888777765542    47899999999998621                 


Q ss_pred             EEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         147 MLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                                   .       ......++.+.+++   +++++||++|.|++++|+.|.+.+..
T Consensus       141 -----------------------------~-------~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          141 -----------------------------D-------VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             -----------------------------C-------HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             -----------------------------C-------HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence                                         0       01122344444454   48999999999999999999988765


Q ss_pred             c
Q psy9621         224 K  224 (253)
Q Consensus       224 ~  224 (253)
                      .
T Consensus       185 p  185 (600)
T 2ywe_A          185 P  185 (600)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.85  E-value=1.1e-22  Score=178.47  Aligned_cols=162  Identities=15%  Similarity=0.088  Sum_probs=113.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ..++|+++|++|+|||||+++|.+..+.....+++..++....+... ....+.+|||||++.|..++..++..+|++|+
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            35689999999999999999998766655544544444333333332 22368999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      |+|+++....+....|    ......++|+++++||+|+...+..                                   
T Consensus        82 VVDa~dg~~~qt~e~l----~~~~~~~vPiIVViNKiDl~~~~~~-----------------------------------  122 (537)
T 3izy_P           82 VVAADDGVMKQTVESI----QHAKDAHVPIVLAINKCDKAEADPE-----------------------------------  122 (537)
T ss_dssp             ECBSSSCCCHHHHHHH----HHHHTTTCCEEECCBSGGGTTTSCC-----------------------------------
T ss_pred             EEECCCCccHHHHHHH----HHHHHcCCcEEEEEecccccccchH-----------------------------------
Confidence            9999986554443332    2223357899999999998632110                                   


Q ss_pred             hhhhcCCCchhhhhhccchhHHH---HHHHh--CCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEA---IAREY--GVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                     ........   ++..+  .++++++||++|.|++++|+.|...+...
T Consensus       123 ---------------~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~  169 (537)
T 3izy_P          123 ---------------KVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEML  169 (537)
T ss_dssp             ---------------SSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTC
T ss_pred             ---------------HHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhcc
Confidence                           00000000   01122  25899999999999999999999887643

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.85  E-value=2.4e-20  Score=160.07  Aligned_cols=163  Identities=12%  Similarity=0.093  Sum_probs=102.8

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCC---CCCcccC--ccceeeEEEEEee-------------C--C----eEEEEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDA---FNTTFIS--TIGIDFKIKTVDL-------------K--G----KKIKLQ   61 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~   61 (253)
                      ....+||+++|+.++|||||+++|.+..   +.....+  |+...+....+..             +  +    ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            3567999999999999999999998432   3333333  5544554433321             1  1    136799


Q ss_pred             EEeCCCcccccccchhhhcCccEEEEEEeCCCh----hhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccc
Q psy9621          62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNE----KSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITT  137 (253)
Q Consensus        62 l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  137 (253)
                      +|||||++.|.......+..+|++|+|+|+++.    .+.+.+..|    ...  ...|+++++||+|+...+..     
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l--~~~~iivv~NK~Dl~~~~~~-----  153 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL--GIDKIIIVQNKIDLVDEKQA-----  153 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT--TCCCEEEEEECTTSSCTTTT-----
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc--CCCeEEEEEEccCCCCHHHH-----
Confidence            999999999877776777889999999999954    444443322    221  23589999999999722100     


Q ss_pred             cccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH---hCCceEEeeccCCCCHHHHH
Q psy9621         138 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE---YGVRFMETSAKANINIEKAF  214 (253)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~  214 (253)
                                                             .     ...++..++.+.   .+++++++||++|.|+++|+
T Consensus       154 ---------------------------------------~-----~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~  189 (408)
T 1s0u_A          154 ---------------------------------------E-----ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLL  189 (408)
T ss_dssp             ---------------------------------------T-----THHHHHHHHHTTSTTTTCCEEEC------CHHHHH
T ss_pred             ---------------------------------------H-----HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHH
Confidence                                                   0     111233344443   25799999999999999999


Q ss_pred             HHHHHHHHh
Q psy9621         215 IELATAIYD  223 (253)
Q Consensus       215 ~~l~~~~~~  223 (253)
                      +.|.+.+..
T Consensus       190 ~~l~~~i~~  198 (408)
T 1s0u_A          190 KAIQDFIPT  198 (408)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHHHhCCC
Confidence            999886653

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=9.8e-22  Score=151.63  Aligned_cols=116  Identities=15%  Similarity=0.274  Sum_probs=90.0

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCC---cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcC-
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNT---TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRG-   81 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-   81 (253)
                      ....++|+|+|++|||||||+++|.+..+..   .+.++.+.++         ....+.+|||||++.+...+..++.. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            4567899999999999999999999876644   1222222111         34568999999999998888777776 


Q ss_pred             ---ccEEEEEEeCC-ChhhHHHHHHHHHHHHHhcc----cccceeEEeeeecccccc
Q psy9621          82 ---AMGIMLVYDIT-NEKSFDNILKWLRNIDEHAN----EDVEKMILGKTKDTAGQE  130 (253)
Q Consensus        82 ---~d~~ilv~d~~-~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~  130 (253)
                         +|++|+|||++ ++.++..+..|+..+.....    .++|+++|+||+|+..++
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence               89999999999 89999999999888876532    589999999999997543

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.84  E-value=1.3e-20  Score=157.96  Aligned_cols=135  Identities=13%  Similarity=0.140  Sum_probs=99.8

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCC----------hhhHHHHHHHHHHHHHhc-ccccceeEEeeeec
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITN----------EKSFDNILKWLRNIDEHA-NEDVEKMILGKTKD  125 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D  125 (253)
                      .+.+.+|||+|++.++.+|..++++++++|||||+++          ..++.....|+..+.... ..++|+++++||+|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence            5789999999999999999999999999999999999          567999889999887643 26799999999999


Q ss_pred             cccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH-----------H
Q psy9621         126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR-----------E  194 (253)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~  194 (253)
                      +..++...                                ..+..++++...    .+..+++.++++           .
T Consensus       272 L~~~ki~~--------------------------------~~l~~~fp~~~g----~~~~~e~~~~~~~~f~~l~~~~~~  315 (353)
T 1cip_A          272 LFEEKIKK--------------------------------SPLTICYPEYAG----SNTYEEAAAYIQCQFEDLNKRKDT  315 (353)
T ss_dssp             HHHHHHTT--------------------------------SCGGGTCTTCCS----CSCHHHHHHHHHHHHHTTCSCTTT
T ss_pred             chhhhccc--------------------------------cchhhcccccCC----CCCHHHHHHHHHHHHHHhhcccCC
Confidence            86332110                                001111111000    023344555554           3


Q ss_pred             hCCceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621         195 YGVRFMETSAKANINIEKAFIELATAIYDKTSG  227 (253)
Q Consensus       195 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  227 (253)
                      .++.+++|||+++.||+++|+++.+.+....+.
T Consensus       316 ~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l~  348 (353)
T 1cip_A          316 KEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLK  348 (353)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             CceEEEEEECcCchhHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999876653

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.84  E-value=1.7e-20  Score=163.85  Aligned_cols=157  Identities=17%  Similarity=0.191  Sum_probs=107.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCC-------CCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDA-------FNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR   80 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (253)
                      ..++|+++|+.++|||||+++|.+..       ......+.+.++.....+.+++  ..+.+|||||++.|......++.
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~   95 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   95 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence            46899999999999999999999765       1222222222222222233333  67999999999999888888899


Q ss_pred             CccEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621          81 GAMGIMLVYDITN---EKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS  157 (253)
Q Consensus        81 ~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (253)
                      .+|++|+|+|+++   +.+.+.+.    .+..   .++|+++++||+|+..+..                          
T Consensus        96 ~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~--------------------------  142 (482)
T 1wb1_A           96 IIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEE--------------------------  142 (482)
T ss_dssp             SCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHH--------------------------
T ss_pred             hCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchh--------------------------
Confidence            9999999999987   44443332    2222   4689999999999862100                          


Q ss_pred             hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh----CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY----GVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                      ++                       ...++..++.+..    +++++++||++|.|+++|++.|.+.+.
T Consensus       143 ~~-----------------------~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          143 IK-----------------------RTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             HH-----------------------HHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HH-----------------------HHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            00                       1122344444444    579999999999999999999999875

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.84  E-value=4e-21  Score=166.48  Aligned_cols=155  Identities=15%  Similarity=0.137  Sum_probs=101.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc--------hhh
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT--------TSY   78 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~   78 (253)
                      ..+||+++|++|||||||+|+|.+.... ....++...++....+.+++  ..+.+|||||..++....        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            4579999999999999999999875432 22223333334333445555  458999999986654333        236


Q ss_pred             hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          79 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      ++.+|++++|+|++++.+... ..|+..+     ...|+++|+||+|+......                          
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----~~~piivV~NK~Dl~~~~~~--------------------------  348 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQV-----KHRPLILVMNKIDLVEKQLI--------------------------  348 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHH-----TTSCEEEEEECTTSSCGGGS--------------------------
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhc-----cCCcEEEEEECCCCCcchhh--------------------------
Confidence            789999999999998776554 3454444     34799999999998732111                          


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                               .  ...++.  .+.+++++||++|.|++++++.|.+.+....
T Consensus       349 -------------------------~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          349 -------------------------T--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             -------------------------T--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred             -------------------------H--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence                                     0  011111  3568999999999999999999999887654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.84  E-value=3.6e-20  Score=159.18  Aligned_cols=164  Identities=15%  Similarity=0.135  Sum_probs=110.7

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcC---CCCCcccC--ccceeeEEEEEee-------------C--C----eEEEE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDD---AFNTTFIS--TIGIDFKIKTVDL-------------K--G----KKIKL   60 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~   60 (253)
                      .....+||+++|+.++|||||+++|.+.   .+.....+  |+...+....+..             +  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            4567899999999999999999999843   23333334  5544454333321             0  1    13679


Q ss_pred             EEEeCCCcccccccchhhhcCccEEEEEEeCCCh----hhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccc
Q psy9621          61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNE----KSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTIT  136 (253)
Q Consensus        61 ~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  136 (253)
                      .+|||||++.|.......+..+|++|+|+|+++.    .+.+.+..+    ...  ...|+++++||+|+.....     
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~--~~~~iivviNK~Dl~~~~~-----  154 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII--GQKNIIIAQNKIELVDKEK-----  154 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH--TCCCEEEEEECGGGSCHHH-----
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc--CCCcEEEEEECccCCCHHH-----
Confidence            9999999999877777777889999999999954    344433322    222  2358999999999862110     


Q ss_pred             ccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH---hCCceEEeeccCCCCHHHH
Q psy9621         137 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE---YGVRFMETSAKANINIEKA  213 (253)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l  213 (253)
                                              ..                    ...++..++.+.   .+++++++||++|.|+++|
T Consensus       155 ------------------------~~--------------------~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L  190 (410)
T 1kk1_A          155 ------------------------AL--------------------ENYRQIKEFIEGTVAENAPIIPISALHGANIDVL  190 (410)
T ss_dssp             ------------------------HH--------------------HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHH
T ss_pred             ------------------------HH--------------------HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHH
Confidence                                    00                    011122333332   3579999999999999999


Q ss_pred             HHHHHHHHHh
Q psy9621         214 FIELATAIYD  223 (253)
Q Consensus       214 ~~~l~~~~~~  223 (253)
                      ++.|.+.+..
T Consensus       191 ~~~l~~~~~~  200 (410)
T 1kk1_A          191 VKAIEDFIPT  200 (410)
T ss_dssp             HHHHHHHSCC
T ss_pred             HHHHHHhCCC
Confidence            9999886653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.84  E-value=9e-21  Score=156.31  Aligned_cols=158  Identities=11%  Similarity=0.069  Sum_probs=106.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCc-ccCccceeeEEEEEeeCCeEEEEEEEeCCCcc---------cccccchh
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTT-FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE---------RFHTITTS   77 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~   77 (253)
                      ...+|+++|++|||||||+++|++..+... ..+  +.+.....-.+.....++.+|||||..         .+......
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~--~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKA--QTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCS--SCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCC--CcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            345899999999999999999998765322 112  111111111122234679999999987         23444566


Q ss_pred             hhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621          78 YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS  157 (253)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (253)
                      +++.+|++++|+|+++   +.....|+.....  ..+.|+++++||+|+..                             
T Consensus        85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~-----------------------------  130 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQ-----------------------------  130 (301)
T ss_dssp             CCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCC-----------------------------
T ss_pred             HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCc-----------------------------
Confidence            7889999999999976   2233334333222  25799999999999861                             


Q ss_pred             hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC-ceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV-RFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                       ...     ...+...++++.++. .++++||++|.|++++++.+...+..
T Consensus       131 -----------------~~~-----~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          131 -----------------EKA-----DLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             -----------------CHH-----HHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             -----------------cHH-----HHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence                             111     222334555666665 78999999999999999999877654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.83  E-value=6.4e-21  Score=155.35  Aligned_cols=165  Identities=15%  Similarity=0.193  Sum_probs=94.9

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCC-Ccc-------cCccceeeEEEEEeeCCeEEEEEEEeCCCcccc------
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTF-------ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF------   71 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------   71 (253)
                      ....+||+|+|.+|+|||||+|+++..... ..+       .++++.+.....+..++..+.+.+|||||....      
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            456899999999999999999998765443 333       566666666666665666678999999997432      


Q ss_pred             -cccc-------hhhhc-------------CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621          72 -HTIT-------TSYYR-------------GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE  130 (253)
Q Consensus        72 -~~~~-------~~~~~-------------~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  130 (253)
                       ..+.       ..++.             .+|+++++++.+..........++..+..    ++|+++|+||+|+... 
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~-  159 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTP-  159 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCH-
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCH-
Confidence             2222       22222             27789998876653222222334444432    7999999999998621 


Q ss_pred             ccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCH
Q psy9621         131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINI  210 (253)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  210 (253)
                                                                   .+.   ........+.....+++++.+||.++.|+
T Consensus       160 ---------------------------------------------~e~---~~~~~~i~~~l~~~~i~v~~~sa~~~~~~  191 (274)
T 3t5d_A          160 ---------------------------------------------EEC---QQFKKQIMKEIQEHKIKIYEFPETDDEEE  191 (274)
T ss_dssp             ---------------------------------------------HHH---HHHHHHHHHHHHHTTCCCCCC--------
T ss_pred             ---------------------------------------------HHH---HHHHHHHHHHHHHcCCeEEcCCCCCChhH
Confidence                                                         110   01122344555667899999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy9621         211 EKAFIELATAIYD  223 (253)
Q Consensus       211 ~~l~~~l~~~~~~  223 (253)
                      ++++..|...+.-
T Consensus       192 ~~l~~~l~~~~p~  204 (274)
T 3t5d_A          192 NKLVKKIKDRLPL  204 (274)
T ss_dssp             ---CHHHHHTCSE
T ss_pred             HHHHHHHhcCCCc
Confidence            9999998876543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.83  E-value=1.1e-20  Score=163.45  Aligned_cols=161  Identities=17%  Similarity=0.120  Sum_probs=104.3

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCC--CCc----------ccCcc-------------------ceeeEEEEEe
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAF--NTT----------FISTI-------------------GIDFKIKTVD   52 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~--~~~----------~~~~~-------------------~~~~~~~~~~   52 (253)
                      ......+||+++|++++|||||+++|++...  ...          ..++.                   |++.......
T Consensus        19 ~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~   98 (434)
T 1zun_B           19 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   98 (434)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeE
Confidence            3445679999999999999999999975431  100          00111                   1111111122


Q ss_pred             eCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccccc-ceeEEeeeeccccccc
Q psy9621          53 LKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDV-EKMILGKTKDTAGQER  131 (253)
Q Consensus        53 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~-p~iiv~nK~D~~~~~~  131 (253)
                      +......+.+|||||++.|......++..+|++|+|+|+++....+ ..+++..+..   .++ |+++++||+|+...  
T Consensus        99 ~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~---~~~~~iIvviNK~Dl~~~--  172 (434)
T 1zun_B           99 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASL---LGIKHIVVAINKMDLNGF--  172 (434)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEEECTTTTTS--
T ss_pred             eecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEEcCcCCcc--
Confidence            2334467999999999999888888899999999999999864322 2334433332   244 69999999998621  


Q ss_pred             cccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-----CceEEeeccC
Q psy9621         132 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-----VRFMETSAKA  206 (253)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~  206 (253)
                                                                 ..... . ....+..++++.++     ++++++||++
T Consensus       173 -------------------------------------------~~~~~-~-~i~~~~~~~~~~~g~~~~~~~~i~vSA~~  207 (434)
T 1zun_B          173 -------------------------------------------DERVF-E-SIKADYLKFAEGIAFKPTTMAFVPMSALK  207 (434)
T ss_dssp             -------------------------------------------CHHHH-H-HHHHHHHHHHHTTTCCCSEEEEEECCTTT
T ss_pred             -------------------------------------------cHHHH-H-HHHHHHHHHHHHhCCCccCceEEEEeccC
Confidence                                                       00000 0 12234556666666     6899999999


Q ss_pred             CCCHHHHHH
Q psy9621         207 NINIEKAFI  215 (253)
Q Consensus       207 ~~gi~~l~~  215 (253)
                      |.|+++++.
T Consensus       208 g~gi~~~~~  216 (434)
T 1zun_B          208 GDNVVNKSE  216 (434)
T ss_dssp             CTTTSSCCT
T ss_pred             CCCcccccc
Confidence            999998543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.83  E-value=2.9e-20  Score=153.68  Aligned_cols=138  Identities=13%  Similarity=0.115  Sum_probs=99.4

Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCC----------ChhhHHHHHHHHHHHHHhc-ccccceeEEeeee
Q psy9621          56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT----------NEKSFDNILKWLRNIDEHA-NEDVEKMILGKTK  124 (253)
Q Consensus        56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~  124 (253)
                      +.+.+++|||+|++.++.++..++++++++|+|||++          +..++.....|+..+.... ..++|+++++||+
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~  244 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  244 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence            3578999999999999999999999999999999665          6777888888888886643 2679999999999


Q ss_pred             ccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHH----------HHH
Q psy9621         125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAI----------ARE  194 (253)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~  194 (253)
                      |+..++....-                                +..++++...   .....+++.++          +..
T Consensus       245 DL~~~ki~~~~--------------------------------l~~~fp~y~g---~~~~~e~a~~fi~~~F~~~~~~~~  289 (327)
T 3ohm_A          245 DLLEEKIMYSH--------------------------------LVDYFPEYDG---PQRDAQAAREFILKMFVDLNPDSD  289 (327)
T ss_dssp             HHHHHHTTTSC--------------------------------GGGTCTTCCS---CSSCHHHHHHHHHHHHHSSCTTTT
T ss_pred             hhhhhhhccch--------------------------------HhhhchhccC---CCCCHHHHHHHHHHHHHhhccccc
Confidence            99754321100                                0011101000   00223334444          234


Q ss_pred             hCCceEEeeccCCCCHHHHHHHHHHHHHhccCCC
Q psy9621         195 YGVRFMETSAKANINIEKAFIELATAIYDKTSGR  228 (253)
Q Consensus       195 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  228 (253)
                      .++.+++|||+++.||+.+|..+...+.++....
T Consensus       290 ~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l~~  323 (327)
T 3ohm_A          290 KIIYSHFTCATDTENIRFVFAAVKDTILQLNLKE  323 (327)
T ss_dssp             SCEEEEECCTTCHHHHHHHHHHHHHHHHHTTCC-
T ss_pred             CCcEEEEEEeecCHHHHHHHHHHHHHHHHHhHHh
Confidence            5678899999999999999999999999876543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.83  E-value=1.1e-20  Score=165.37  Aligned_cols=120  Identities=16%  Similarity=0.115  Sum_probs=78.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCC--CCCc---------------------------ccCccceeeEEEEEeeCCeE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDA--FNTT---------------------------FISTIGIDFKIKTVDLKGKK   57 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   57 (253)
                      ...+||+++|++|+|||||+++|++..  +...                           .....|++.......+....
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            357999999999999999999997541  1100                           00011333322233344455


Q ss_pred             EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHH-----HHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI-----LKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~-----~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ..+.+|||||+++|......++..+|++|+|+|+++..++..+     ..+...+.... ...|+++++||+|+.
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~  184 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNV  184 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGG
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcc
Confidence            6799999999999999889999999999999999987543321     11111122211 234699999999987

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.83  E-value=8.5e-21  Score=167.00  Aligned_cols=123  Identities=14%  Similarity=0.103  Sum_probs=86.8

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCC-----------------CCccc---CccceeeEEEEEeeCCeEEEEEEEe
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAF-----------------NTTFI---STIGIDFKIKTVDLKGKKIKLQIWD   64 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~-----------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D   64 (253)
                      +.+...+|+|+|++|+|||||+++|+...-                 ...+.   ...|++.......+......+.+||
T Consensus         9 ~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liD   88 (528)
T 3tr5_A            9 QTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLD   88 (528)
T ss_dssp             HHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEEC
T ss_pred             hhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEE
Confidence            345678999999999999999999962110                 00000   0012222222222333457799999


Q ss_pred             CCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc
Q psy9621          65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER  131 (253)
Q Consensus        65 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~  131 (253)
                      |||+..|......+++.+|++|+|+|+++..+......|. .+.   ..++|+++++||+|+.++..
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~---~~~iPiivviNK~Dl~~~~~  151 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCR---LRHTPIMTFINKMDRDTRPS  151 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHH---TTTCCEEEEEECTTSCCSCH
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEeCCCCccccH
Confidence            9999999999999999999999999999877666655553 222   24799999999999976543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.83  E-value=6.4e-20  Score=158.91  Aligned_cols=166  Identities=17%  Similarity=0.100  Sum_probs=104.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc-----------
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI-----------   74 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------   74 (253)
                      +..+||+++|++|||||||+++|.+.... ....+....+.....+.+++.  .+.+|||+|.......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            35689999999999999999999986542 111222222333344555654  5889999997433221           


Q ss_pred             c-hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEecc
Q psy9621          75 T-TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDIT  153 (253)
Q Consensus        75 ~-~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (253)
                      . ..+++.+|++++++|+++..+.... .+...+..   .+.|+++++||+|+..                         
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~-------------------------  306 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVV-------------------------  306 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGST-------------------------
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCC-------------------------
Confidence            1 2467789999999999987665542 22222222   4799999999999862                         


Q ss_pred             CccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         154 NEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                           .+............+.++...+.+++++||++|.|++++|+.+.+.+...
T Consensus       307 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          307 ---------------------HREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             ---------------------TGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ---------------------chhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence                                 11100000111111222222357999999999999999999999877654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.83  E-value=1e-19  Score=153.46  Aligned_cols=164  Identities=15%  Similarity=0.086  Sum_probs=108.0

Q ss_pred             eE-EEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc---------ccccchhhh
Q psy9621          10 FK-LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER---------FHTITTSYY   79 (253)
Q Consensus        10 ~k-i~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~   79 (253)
                      ++ |+++|++|||||||+++|.+..+.....+....+.....+.+++  ..+.+|||+|...         |... ...+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~  255 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEA  255 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHH
Confidence            44 99999999999999999998765332222222234445566666  4589999999622         2222 2246


Q ss_pred             cCccEEEEEEeCCChh--hHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621          80 RGAMGIMLVYDITNEK--SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS  157 (253)
Q Consensus        80 ~~~d~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (253)
                      ..+|++++|+|++++.  ....+..|...+......+.|+++|+||+|+..                             
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~-----------------------------  306 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN-----------------------------  306 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCC-----------------------------
T ss_pred             HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCC-----------------------------
Confidence            8899999999999886  555555665555554446799999999999861                             


Q ss_pred             hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh---CCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY---GVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                       ....    ........++..+   +.+++++||+++.|++++++.|.+.+.....
T Consensus       307 -----------------~~~~----~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~  357 (364)
T 2qtf_A          307 -----------------GDLY----KKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSL  357 (364)
T ss_dssp             -----------------SCHH----HHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred             -----------------chHH----HHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence                             1100    0011222334444   2468999999999999999999998776543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.83  E-value=3e-21  Score=162.91  Aligned_cols=165  Identities=19%  Similarity=0.310  Sum_probs=92.9

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCC-CCCcc--------cCccceeeEEEEEeeCCeEEEEEEEeCCCc-------c
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDA-FNTTF--------ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ-------E   69 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~   69 (253)
                      ....++|+|+|++|+|||||+++|.... +...+        .++++.++....+...+....+.+|||||.       +
T Consensus        34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e  113 (361)
T 2qag_A           34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD  113 (361)
T ss_dssp             HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred             CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence            3557899999999999999999976543 32222        145544444334444555678999999999       6


Q ss_pred             cccccch-------hhhcCccEE-----------EEEEeCCC-hhhHHHHH-HHHHHHHHhcccccceeEEeeeeccccc
Q psy9621          70 RFHTITT-------SYYRGAMGI-----------MLVYDITN-EKSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQ  129 (253)
Q Consensus        70 ~~~~~~~-------~~~~~~d~~-----------ilv~d~~~-~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~  129 (253)
                      .|..+..       .+++.++++           +++|++++ ..++..+. .|+..+    ..++|+++|+||+|+.. 
T Consensus       114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~-  188 (361)
T 2qag_A          114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLT-  188 (361)
T ss_dssp             --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCC-
Confidence            6666665       566554433           35566554 44555544 343333    36799999999999862 


Q ss_pred             cccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhcc--chhHHHHHHHhCCceEEeeccCC
Q psy9621         130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC--KHRGEAIAREYGVRFMETSAKAN  207 (253)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~  207 (253)
                                                                   .++     +.  ...+.++++.++++++++||+++
T Consensus       189 ---------------------------------------------~~e-----v~~~k~~i~~~~~~~~i~~~~~Sa~~~  218 (361)
T 2qag_A          189 ---------------------------------------------LKE-----RERLKKRILDEIEEHNIKIYHLPDAES  218 (361)
T ss_dssp             ---------------------------------------------HHH-----HHHHHHHHHHHTTCC-CCSCCCC----
T ss_pred             ---------------------------------------------HHH-----HHHHHHHHHHHHHHCCCCEEeCCCcCC
Confidence                                                         111     21  14556667777899999999999


Q ss_pred             CCHHHHHHHHHHHHHhccC
Q psy9621         208 INIEKAFIELATAIYDKTS  226 (253)
Q Consensus       208 ~gi~~l~~~l~~~~~~~~~  226 (253)
                      .| ++.|..+.+.+.+..+
T Consensus       219 ~~-~e~~~~l~~~i~~~ip  236 (361)
T 2qag_A          219 DE-DEDFKEQTRLLKASIP  236 (361)
T ss_dssp             ------CHHHHHHHHHTCS
T ss_pred             Cc-chhHHHHHHHHHhcCC
Confidence            99 9999999988876553

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.83  E-value=4e-21  Score=166.19  Aligned_cols=163  Identities=18%  Similarity=0.204  Sum_probs=105.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcC--CCCCccc---------------------------CccceeeEEEEEeeCCeE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDD--AFNTTFI---------------------------STIGIDFKIKTVDLKGKK   57 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~--~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~   57 (253)
                      ...+||+++|++|+|||||+++|+..  .+.....                           ...|++.......+....
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            35799999999999999999999863  2321100                           001112211122233345


Q ss_pred             EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhc----cccc-ceeEEeeeecccccccc
Q psy9621          58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA----NEDV-EKMILGKTKDTAGQERF  132 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~----~~~~-p~iiv~nK~D~~~~~~~  132 (253)
                      ..+.+|||||+++|......+++.+|++|+|+|+++ .+|+....|..+...+.    ..++ |+++++||+|+....  
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~--  160 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP--  160 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST--
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc--
Confidence            679999999999998888889999999999999998 67776554333332222    1244 689999999996210  


Q ss_pred             ccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-----CceEEeeccCC
Q psy9621         133 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-----VRFMETSAKAN  207 (253)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~  207 (253)
                                                                ..+... ....++.+++++.++     ++++++||++|
T Consensus       161 ------------------------------------------~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g  197 (435)
T 1jny_A          161 ------------------------------------------YDEKRY-KEIVDQVSKFMRSYGFNTNKVRFVPVVAPSG  197 (435)
T ss_dssp             ------------------------------------------TCHHHH-HHHHHHHHHHHHHTTCCCTTCEEEECBTTTT
T ss_pred             ------------------------------------------ccHHHH-HHHHHHHHHHHHHcCCCcCCceEEEeecccC
Confidence                                                      000000 022344566666665     68999999999


Q ss_pred             CCHHHHHH
Q psy9621         208 INIEKAFI  215 (253)
Q Consensus       208 ~gi~~l~~  215 (253)
                      .|+.++++
T Consensus       198 ~~v~e~~~  205 (435)
T 1jny_A          198 DNITHKSE  205 (435)
T ss_dssp             BTTTBCCS
T ss_pred             cccccccc
Confidence            99986654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.82  E-value=4.6e-21  Score=166.85  Aligned_cols=176  Identities=11%  Similarity=0.067  Sum_probs=111.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCC--------cccccccchhhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG--------QERFHTITTSYYR   80 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G--------~~~~~~~~~~~~~   80 (253)
                      ..+|+++|.+|||||||+++|.+..+... .++.|++..............+.+|||||        ++++......+++
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  101 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD  101 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence            56999999999999999999998765422 34445555555555555566899999999        5666777788899


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      .+|++|+|+|..+..+.  ...|+..+...  .+.|+++|+||+|+...                               
T Consensus       102 ~ad~il~VvD~~~~~~~--~d~~l~~~l~~--~~~pvilV~NK~D~~~~-------------------------------  146 (456)
T 4dcu_A          102 EADVIIFMVNGREGVTA--ADEEVAKILYR--TKKPVVLAVNKLDNTEM-------------------------------  146 (456)
T ss_dssp             HCSEEEEEEESSSCSCH--HHHHHHHHHTT--CCSCEEEEEECC------------------------------------
T ss_pred             hCCEEEEEEeCCCCCCh--HHHHHHHHHHH--cCCCEEEEEECccchhh-------------------------------
Confidence            99999999998764332  23444443332  57999999999998621                               


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhccCCCCCCCCCCeEee
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTI  239 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  239 (253)
                                     ..         ...++. .++ -..+++||++|.|++++++.+.+.+..... ........++.+
T Consensus       147 ---------------~~---------~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~-~~~~~~~~ki~i  200 (456)
T 4dcu_A          147 ---------------RA---------NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPE-TKYNEEVIQFCL  200 (456)
T ss_dssp             ----------------------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCS-SCCCTTCEEEEE
T ss_pred             ---------------hh---------hHHHHH-HcCCCceEEeecccccchHHHHHHHHhhcccccc-cccccccceeEE
Confidence                           10         000011 123 256899999999999999999887654321 122223345555


Q ss_pred             cCCCCCC
Q psy9621         240 DKKPDRG  246 (253)
Q Consensus       240 ~~~~~~~  246 (253)
                      -..++.+
T Consensus       201 vG~~~vG  207 (456)
T 4dcu_A          201 IGRPNVG  207 (456)
T ss_dssp             ECSTTSS
T ss_pred             ecCCCCC
Confidence            5555544

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.82  E-value=3.3e-20  Score=155.46  Aligned_cols=141  Identities=10%  Similarity=0.090  Sum_probs=96.3

Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCC----------ChhhHHHHHHHHHHHHHhc-ccccceeEEeeee
Q psy9621          56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT----------NEKSFDNILKWLRNIDEHA-NEDVEKMILGKTK  124 (253)
Q Consensus        56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~  124 (253)
                      +.+.+++|||+|++.++.++..++++++++|+|||++          +..+|+....|+..+.... ..++|+++++||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5688999999999999999999999999999999998          7889999999999887653 2679999999999


Q ss_pred             ccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH----------
Q psy9621         125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE----------  194 (253)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  194 (253)
                      |+..++....-...                .              ..+++...........+++.++++.          
T Consensus       261 DL~~~k~~~v~l~~----------------~--------------~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~  310 (354)
T 2xtz_A          261 DIFEKKVLDVPLNV----------------C--------------EWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNT  310 (354)
T ss_dssp             HHHHHHTTTSCGGG----------------S--------------GGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             chhhhhcccccccc----------------c--------------ccccccccccCCCcCHHHHHHHHHHHHHHhhhccc
Confidence            98633211000000                0              0000000000000122344444322          


Q ss_pred             ------hCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         195 ------YGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       195 ------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                            ..+.+++|||+++.||+++|+.+.+.+.++.+
T Consensus       311 ~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~~~l  348 (354)
T 2xtz_A          311 APDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNL  348 (354)
T ss_dssp             CTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCcceEEEEEEeecchhHHHHHHHHHHHHHHHHH
Confidence                  12456899999999999999999998877654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.82  E-value=1e-19  Score=161.96  Aligned_cols=114  Identities=18%  Similarity=0.132  Sum_probs=82.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCc----ccCccceeeEEEEE------------eeCCeEEEEEEEeCCCcccc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTT----FISTIGIDFKIKTV------------DLKGKKIKLQIWDTAGQERF   71 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~~l~Dt~G~~~~   71 (253)
                      ..++|+++|++++|||||+++|++..+...    ..++++..+.....            .+......+.+|||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            357999999999999999999986544322    22344433321110            00111235999999999999


Q ss_pred             cccchhhhcCccEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccccceeEEeeeecccc
Q psy9621          72 HTITTSYYRGAMGIMLVYDITN---EKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG  128 (253)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  128 (253)
                      ..++..+++.+|++|+|||+++   +.+++.+..+    .   ..++|+++++||+|+..
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~---~~~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNIL----R---MYRTPFVVAANKIDRIH  136 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----H---HTTCCEEEEEECGGGST
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----H---HcCCeEEEEeccccccc
Confidence            9999999999999999999999   6666554422    1   25799999999999964

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.81  E-value=4.8e-20  Score=158.11  Aligned_cols=118  Identities=14%  Similarity=0.081  Sum_probs=84.3

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcC--------CCCCc--c-----cCccceeeEEEEEeeCCeEEEEEEEeCCCccc
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDD--------AFNTT--F-----ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER   70 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~--------~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   70 (253)
                      ....+||+++|++++|||||+++|.+.        .+...  .     ....|++.......+......+.+|||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            346799999999999999999999862        22111  0     01223333333344444456799999999999


Q ss_pred             ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                      |......++..+|++|+|+|+++.... ...+++..+..   .++| +++++||+|+.
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~---~~ip~iivviNK~Dl~  141 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFMNKVDMV  141 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH---TTCCCEEEEEECGGGC
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEECcccc
Confidence            988888889999999999999886543 33445544433   3688 88999999986

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.81  E-value=7.6e-20  Score=156.42  Aligned_cols=163  Identities=15%  Similarity=0.109  Sum_probs=109.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcC-------CCCCc-------ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDD-------AFNTT-------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT   73 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   73 (253)
                      +.+||+++|++++|||||+++|.+.       .+...       .....|++.......+......+.+|||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            4689999999999999999999863       11110       001223333333334444456799999999999988


Q ss_pred             cchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccccccccccccccccccceeeEEEEec
Q psy9621          74 ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDI  152 (253)
Q Consensus        74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (253)
                      ....++..+|++|+|+|+++....+....| ..+..   .++| +++++||+|+..                        
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~Dl~~------------------------  133 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKADAVQ------------------------  133 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCS------------------------
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECcccCC------------------------
Confidence            788889999999999999986543333333 33322   4688 689999999862                        


Q ss_pred             cCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-----CceEEeeccCCCC----------HHHHHHHH
Q psy9621         153 TNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-----VRFMETSAKANIN----------IEKAFIEL  217 (253)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~g----------i~~l~~~l  217 (253)
                                            .... . .....+.+++.+.++     ++++++||++|.|          +++|++.|
T Consensus       134 ----------------------~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l  189 (397)
T 1d2e_A          134 ----------------------DSEM-V-ELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAV  189 (397)
T ss_dssp             ----------------------CHHH-H-HHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHH
T ss_pred             ----------------------CHHH-H-HHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHH
Confidence                                  1000 0 011234455666555     6899999999775          88898888


Q ss_pred             HHHHH
Q psy9621         218 ATAIY  222 (253)
Q Consensus       218 ~~~~~  222 (253)
                      ...+.
T Consensus       190 ~~~~p  194 (397)
T 1d2e_A          190 DTYIP  194 (397)
T ss_dssp             HHHSC
T ss_pred             HHhCC
Confidence            77664

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.81  E-value=8.1e-20  Score=151.57  Aligned_cols=157  Identities=14%  Similarity=0.118  Sum_probs=102.0

Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcc-cccceeEEeeee
Q psy9621          56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT----------NEKSFDNILKWLRNIDEHAN-EDVEKMILGKTK  124 (253)
Q Consensus        56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~  124 (253)
                      +.+.+++|||+|++.++.++..++++++++|+|||++          +..++.....|+..+..... .++|+++++||+
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~  238 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM  238 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence            4578999999999999999999999999999999998          77889999999888876532 689999999999


Q ss_pred             cccccccccc-ccccccccceeeEEEEeccCccchhhHHHHHHhhhhh----cCCCchhhhhhccchhHHHHHHHhCCce
Q psy9621         125 DTAGQERFHT-ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH----ANEDPQVVNSWVCKHRGEAIAREYGVRF  199 (253)
Q Consensus       125 D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (253)
                      |+..++.... +...+...          ......++..+|+..--..    ....+..    ........-+....+.+
T Consensus       239 DL~~eki~~~~l~~~fp~y----------~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~----~~~~~~~~~~~~~~iy~  304 (340)
T 4fid_A          239 DLFEEKLTKVPLNTIFPEY----------TGGDNAVMGAQYIQQLFTGKLQTEEMNISG----ADGTANIEGAVNEKVYT  304 (340)
T ss_dssp             HHHHHHHHHSCGGGTCTTC----------CCTTCHHHHHHHHHHHHHTTSEEEESCC------------------CEEEE
T ss_pred             hhhhhhcCcchHHHhhhhh----------cCCCCHHHHHHHHHHhcccccchhhhhccc----cccccccccccCcceEE
Confidence            9985543211 11111111          0112344444444321100    0000000    00000000011134788


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621         200 METSAKANINIEKAFIELATAIYDKTSG  227 (253)
Q Consensus       200 ~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  227 (253)
                      ++|||++..||+.+|..+...+++ .+.
T Consensus       305 h~TsA~dt~nv~~vF~~v~~~Il~-~l~  331 (340)
T 4fid_A          305 NPTNATDGSNIKRVFMLAVDVIMK-NMA  331 (340)
T ss_dssp             EEECTTCHHHHHHHHHHHHHHHHH-HHH
T ss_pred             EEEEeeCcHHHHHHHHHHHHHHHH-HHH
Confidence            999999999999999999999887 543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.80  E-value=1.3e-20  Score=163.69  Aligned_cols=116  Identities=13%  Similarity=0.096  Sum_probs=78.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcC--CCCCc-----------------------------ccCccceeeEEEEEeeCC
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDD--AFNTT-----------------------------FISTIGIDFKIKTVDLKG   55 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   55 (253)
                      ...+||+++|++++|||||+++|++.  .+...                             ..+.+.++....  .+..
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~--~~~~   82 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW--KFET   82 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE--EEEC
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE--EEec
Confidence            35799999999999999999999853  22110                             001111112112  2333


Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh---hHH---HHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK---SFD---NILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                      ....+.+|||||++.|......++..+|++|+|+|+++..   +|+   .....+..+..   .++| +++++||+|+.
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~  158 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSV  158 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGG
T ss_pred             CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccc
Confidence            4567999999999999888888899999999999998753   221   12222222221   3566 89999999986

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.80  E-value=4e-21  Score=167.27  Aligned_cols=112  Identities=14%  Similarity=0.150  Sum_probs=80.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ...+|+++|++++|||||+++|....+.....+.+..+.....+..++  ..+.+|||||++.|..++...+..+|++|+
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            457899999999999999999987555433323222222222222333  468999999999999999999999999999


Q ss_pred             EEeCCCh---hhHHHHHHHHHHHHHhcccccceeEEeeeecccc
Q psy9621          88 VYDITNE---KSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG  128 (253)
Q Consensus        88 v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  128 (253)
                      |+|+++.   .+.+.+.    .+   ...++|+++++||+|+.+
T Consensus        81 VVda~~g~~~qT~e~l~----~~---~~~~vPiIVviNKiDl~~  117 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAIQ----HA---KAAQVPVVVAVNKIDKPE  117 (501)
T ss_dssp             EEETTTBSCTTTHHHHH----HH---HHTTCCEEEEEECSSSST
T ss_pred             EeecccCccHHHHHHHH----HH---HhcCceEEEEEEeccccc
Confidence            9999884   3333321    11   225789999999999973

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.80  E-value=5.4e-21  Score=166.56  Aligned_cols=117  Identities=11%  Similarity=0.060  Sum_probs=69.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc--CCCCCc-------------------------------ccCccceeeEEEEEee
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD--DAFNTT-------------------------------FISTIGIDFKIKTVDL   53 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~--~~~~~~-------------------------------~~~~~~~~~~~~~~~~   53 (253)
                      ...+||+++|+.++|||||+++|+.  +.+...                               .-.|+.  .....+..
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~--~~~~~~~~  118 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVE--VGRAYFET  118 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC------------------------------CCEEEC
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEE--eeeEEEec
Confidence            4578999999999999999999974  222100                               001111  11112222


Q ss_pred             CCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh---hHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          54 KGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK---SFDNILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        54 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                        ....+.+|||||++.|.......+..+|++|+|+|+++..   +|+...+|.+.+......++| +++++||+|+.
T Consensus       119 --~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~  194 (467)
T 1r5b_A          119 --EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP  194 (467)
T ss_dssp             --SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred             --CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCC
Confidence              2467999999999999888888899999999999999862   333222333333332335787 99999999985

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.80  E-value=3.6e-20  Score=165.75  Aligned_cols=121  Identities=16%  Similarity=0.131  Sum_probs=79.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCccc-----------------------------CccceeeEEEEEeeCCeE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFI-----------------------------STIGIDFKIKTVDLKGKK   57 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   57 (253)
                      ...+||+++|++|+|||||+++|++........                             ...|++.......+....
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            457899999999999999999998653221100                             001222222222233345


Q ss_pred             EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh---hHHHHHHHHHHHHHhccccc-ceeEEeeeeccc
Q psy9621          58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK---SFDNILKWLRNIDEHANEDV-EKMILGKTKDTA  127 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~-p~iiv~nK~D~~  127 (253)
                      ..+.+|||||++.|......+++.+|++|+|+|+++..   ++.....+...+......++ |+++|+||+|+.
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~  318 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV  318 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence            67999999999999888888999999999999998742   11111122222222222344 599999999986

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.80  E-value=3.7e-19  Score=161.00  Aligned_cols=123  Identities=11%  Similarity=0.083  Sum_probs=85.8

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccC----------------ccceeeEEEEEeeCCeEEEEEEEe
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFIS----------------TIGIDFKIKTVDLKGKKIKLQIWD   64 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~D   64 (253)
                      |.....+...+|+++|+.|+|||||+++|+..........                ..++++......+....+.+++||
T Consensus         1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD   80 (665)
T 2dy1_A            1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD   80 (665)
T ss_dssp             -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred             CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence            5666667789999999999999999999984322110000                113334334444444467899999


Q ss_pred             CCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        65 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      |||+..|......+++.+|++++|+|+++....... .++..+..   .++|+++++||+|+.
T Consensus        81 TpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           81 APGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             CCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             CCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH---ccCCEEEEecCCchh
Confidence            999999988888999999999999998876543333 33333333   479999999999997

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.79  E-value=2.4e-19  Score=151.51  Aligned_cols=148  Identities=10%  Similarity=0.032  Sum_probs=103.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD   90 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   90 (253)
                      +|+++|++++|||||+++|+.      .-.|+...+  ..+  ......+.+|||||+++|.......++.+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~------~giTi~~~~--~~~--~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGK------KGTSSDITM--YNN--DKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSE------EEEESSSEE--EEE--CSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHh------CCEEEEeeE--EEE--ecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            999999999999999999981      122332222  223  3334569999999999998777778899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcccccce-eEEee-eeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          91 ITNEKSFDNILKWLRNIDEHANEDVEK-MILGK-TKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                       +. ..+....+++..+..   .++|. ++++| |+|+ .++..                          +         
T Consensus        93 -~~-g~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~--------------------------~---------  131 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDL---LGFKHGIIALTRSDST-HMHAI--------------------------D---------  131 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHH--------------------------H---------
T ss_pred             -CC-CCcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHH--------------------------H---------
Confidence             53 334444555554443   35787 88899 9997 32110                          0         


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHh---CCceEE--eeccC---CCCHHHHHHHHHHHHHh
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREY---GVRFME--TSAKA---NINIEKAFIELATAIYD  223 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~Sa~~---~~gi~~l~~~l~~~~~~  223 (253)
                                    ...++.+++.+..   .+++++  +||++   +.|++++++.|...+..
T Consensus       132 --------------~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          132 --------------ELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             --------------HHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence                          0112233333333   379999  99999   99999999999988764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.79  E-value=7e-19  Score=137.40  Aligned_cols=161  Identities=14%  Similarity=0.177  Sum_probs=100.1

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc----------cccc
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----------FHTI   74 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~   74 (253)
                      +-....+|+++|++|||||||++++.+..+...+.++.|.......+.+.+   .+.+|||||...          +...
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   98 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRA   98 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHH
Confidence            345668999999999999999999998764444455555544333333332   478999999742          2222


Q ss_pred             chhhh---cCccEEEEEEeCCChhhHHH--HHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEE
Q psy9621          75 TTSYY---RGAMGIMLVYDITNEKSFDN--ILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLV  149 (253)
Q Consensus        75 ~~~~~---~~~d~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  149 (253)
                      ...++   ..++++++++|++++.+...  +..|+.      ..++|+++++||+|+..                     
T Consensus        99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~------~~~~~~~~v~nK~D~~s---------------------  151 (210)
T 1pui_A           99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV------DSNIAVLVLLTKADKLA---------------------  151 (210)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH------HTTCCEEEEEECGGGSC---------------------
T ss_pred             HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH------HcCCCeEEEEecccCCC---------------------
Confidence            23343   57899999999988755432  223322      24789999999999851                     


Q ss_pred             EeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         150 YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                               ..+.   ......+..++...+  +.++++||+++.|++++++.|.+.+.+
T Consensus       152 -------------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          152 -------------------------SGAR---KAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             -------------------------HHHH---HHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             -------------------------chhH---HHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence                                     1100   011223444455554  578999999999999999999887644

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.79  E-value=1.6e-18  Score=157.56  Aligned_cols=126  Identities=17%  Similarity=0.170  Sum_probs=88.2

Q ss_pred             CC-ccccCceeEEEEEcCCCCcHHHHHHHhhcC--CCCC-----------cccC---ccceeeEE--EEEeeC-----Ce
Q psy9621           1 MA-KKTYDFLFKLLLIGDSGVGKTCVLFRFSDD--AFNT-----------TFIS---TIGIDFKI--KTVDLK-----GK   56 (253)
Q Consensus         1 m~-~~~~~~~~ki~vvG~~~~GKStL~~~l~~~--~~~~-----------~~~~---~~~~~~~~--~~~~~~-----~~   56 (253)
                      |+ ..+.+..+||+|+|+.|+|||||+++|+..  .+..           .+.+   ..+++...  ..+.+.     +.
T Consensus         1 ~~~~~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~   80 (704)
T 2rdo_7            1 MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYE   80 (704)
T ss_pred             CCCCCCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCC
Confidence            44 345577899999999999999999999742  1111           0000   11222221  222222     23


Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE  130 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  130 (253)
                      ...+++|||||+..|...+..+++.+|++|+|+|+++.........|.. +.   ..++|+++++||+|+...+
T Consensus        81 ~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~~~ip~ilviNKiD~~~~~  150 (704)
T 2rdo_7           81 PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN---KYKVPRIAFVNKMDRMGAN  150 (704)
T ss_pred             ceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH---HcCCCEEEEEeCCCccccc
Confidence            3789999999999998888999999999999999998766555444432 22   2479999999999998764

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.78  E-value=2e-19  Score=158.44  Aligned_cols=122  Identities=15%  Similarity=0.112  Sum_probs=82.0

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCC--CCC------------c------ccCccceeeEEEEEeeCCeEEEEEEEeC
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDA--FNT------------T------FISTIGIDFKIKTVDLKGKKIKLQIWDT   65 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~--~~~------------~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt   65 (253)
                      .+..+||+++|++|+|||||+++|+...  ...            .      ..+..|++.......+......+.+|||
T Consensus        10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT   89 (529)
T 2h5e_A           10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT   89 (529)
T ss_dssp             HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred             hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence            3568999999999999999999998531  100            0      0011222222122223334577999999


Q ss_pred             CCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc
Q psy9621          66 AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER  131 (253)
Q Consensus        66 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~  131 (253)
                      ||+..|......+++.+|++|+|+|+++...... ..++..+   ...++|+++++||+|+.+...
T Consensus        90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~---~~~~ipiivviNK~Dl~~~~~  151 (529)
T 2h5e_A           90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVT---RLRDTPILTFMNKLDRDIRDP  151 (529)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHH---TTTTCCEEEEEECTTSCCSCH
T ss_pred             CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHH---HHcCCCEEEEEcCcCCccccH
Confidence            9999998888889999999999999988643222 2222222   225799999999999987643

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.78  E-value=1.7e-18  Score=157.20  Aligned_cols=213  Identities=15%  Similarity=0.105  Sum_probs=127.8

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcC--CC------CC------------cccCccceeeEEEEEeeCCeEEEEEEEe
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDD--AF------NT------------TFISTIGIDFKIKTVDLKGKKIKLQIWD   64 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~--~~------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D   64 (253)
                      +.+...||+|+|++|+|||||+++|+..  .+      ..            ....|+...  ...+..  ....+.+||
T Consensus         8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~--~~~~i~liD   83 (691)
T 1dar_A            8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFW--KDHRINIID   83 (691)
T ss_dssp             CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEE--TTEEEEEEC
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEE--CCeEEEEEE
Confidence            3467899999999999999999999831  11      00            011122211  122222  346799999


Q ss_pred             CCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc---cccccccccc
Q psy9621          65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER---FHTITTSYYR  141 (253)
Q Consensus        65 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~~  141 (253)
                      |||+..|...+..+++.+|++|+|+|+++..+......|.. +..   .++|+++++||+|+.....   .+++.+.+..
T Consensus        84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~  159 (691)
T 1dar_A           84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTGADLWLVIRTMQERLGA  159 (691)
T ss_dssp             CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTCCHHHHHHHHHHTTCC
T ss_pred             CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCcccCCHHHHHHHHHHHhCC
Confidence            99999999889999999999999999999887777666653 222   4799999999999986642   1222221111


Q ss_pred             cceee--------------------EEEEe-c---------cCccchhhHHHHHHhhhhhcCCCchhhhhh------ccc
Q psy9621         142 GAMGI--------------------MLVYD-I---------TNEKSFDNILKWLRNIDEHANEDPQVVNSW------VCK  185 (253)
Q Consensus       142 ~~~~~--------------------~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  185 (253)
                      .....                    ...|+ .         ......+....|++++.+...+..+.....      +..
T Consensus       160 ~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~  239 (691)
T 1dar_A          160 RPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTE  239 (691)
T ss_dssp             CEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCH
T ss_pred             CccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCH
Confidence            10000                    01111 0         011122234555555555443322211000      111


Q ss_pred             hhHHH-----HHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         186 HRGEA-----IAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       186 ~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                      ++...     +....-+|++.+||.+|.|++.|++.+...+..-.
T Consensus       240 ~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~  284 (691)
T 1dar_A          240 EELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPL  284 (691)
T ss_dssp             HHHHHHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTT
T ss_pred             HHHHHHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChh
Confidence            11111     11112269999999999999999999999886543

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.78  E-value=2.4e-20  Score=166.44  Aligned_cols=121  Identities=16%  Similarity=0.167  Sum_probs=63.3

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCC--CCCc---------------------------ccCccceeeEEEEEeeC
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDA--FNTT---------------------------FISTIGIDFKIKTVDLK   54 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~   54 (253)
                      ......+||+++|++++|||||+++|+...  ....                           .....|++.......+.
T Consensus       172 ~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~  251 (592)
T 3mca_A          172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE  251 (592)
T ss_dssp             SCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred             ccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE
Confidence            345568999999999999999999996311  0000                           00011222222223333


Q ss_pred             CeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh---hH--HH-HHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          55 GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK---SF--DN-ILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~--~~-~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                      .....+.+|||||++.|......++..+|++|+|+|+++..   ++  .. ....+..+.   ..++| +++|+||+|+.
T Consensus       252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~---~lgip~iIvviNKiDl~  328 (592)
T 3mca_A          252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLR---ALGISEIVVSVNKLDLM  328 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHH---HSSCCCEEEEEECGGGG
T ss_pred             eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHH---HcCCCeEEEEEeccccc
Confidence            34567999999999999888888899999999999998642   11  00 111111111   13566 89999999986

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.77  E-value=1.5e-19  Score=148.95  Aligned_cols=120  Identities=16%  Similarity=0.206  Sum_probs=77.8

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc------ccCcc-----------------c---eee------------
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT------FISTI-----------------G---IDF------------   46 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~------~~~~~-----------------~---~~~------------   46 (253)
                      +....++|+|+|.+|||||||+++|.+..+.+.      ..|+.                 |   .++            
T Consensus        22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~  101 (299)
T 2aka_B           22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD  101 (299)
T ss_dssp             TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence            445678999999999999999999998876421      11210                 0   000            


Q ss_pred             -----------EEEEEeeC-CeEEEEEEEeCCCcc-------------cccccchhhhcCccEEE-EEEeCCChhhHHHH
Q psy9621          47 -----------KIKTVDLK-GKKIKLQIWDTAGQE-------------RFHTITTSYYRGAMGIM-LVYDITNEKSFDNI  100 (253)
Q Consensus        47 -----------~~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i-lv~d~~~~~s~~~~  100 (253)
                                 ....+.+. .....+.+|||||..             .+..+...+++.++.+| +|+|+++..+....
T Consensus       102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~  181 (299)
T 2aka_B          102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA  181 (299)
T ss_dssp             HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred             HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence                       00000000 012579999999964             23445667888888777 68999876544443


Q ss_pred             HHHHHHHHHhcccccceeEEeeeeccc
Q psy9621         101 LKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus       101 ~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ..++..+.   ..+.|+++|+||+|+.
T Consensus       182 ~~~~~~~~---~~~~~~i~V~NK~Dl~  205 (299)
T 2aka_B          182 LKIAKEVD---PQGQRTIGVITKLDLM  205 (299)
T ss_dssp             HHHHHHHC---TTCSSEEEEEECGGGS
T ss_pred             HHHHHHhC---CCCCeEEEEEEccccC
Confidence            34444443   2578999999999986

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.76  E-value=6e-18  Score=136.82  Aligned_cols=117  Identities=13%  Similarity=0.192  Sum_probs=83.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCc-ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc------
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTT-FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR------   80 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------   80 (253)
                      ..+||+|+|++|+|||||+++|++..+... ..+..........+...+  ..+.+|||||+..+......+++      
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            579999999999999999999998765322 112112222223333443  47999999999888766655553      


Q ss_pred             ---CccEEEEEEeCCChhhHHHH-HHHHHHHHHhcccc--cceeEEeeeeccc
Q psy9621          81 ---GAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANED--VEKMILGKTKDTA  127 (253)
Q Consensus        81 ---~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~--~p~iiv~nK~D~~  127 (253)
                         ++|++++|++++... +... ..|+..+......+  .|+++|+||+|+.
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~  164 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS  164 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence               889999999988755 3333 46777777665443  4999999999985

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.76  E-value=1.2e-18  Score=162.21  Aligned_cols=165  Identities=14%  Similarity=0.061  Sum_probs=108.3

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCC-------CCC-------cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDA-------FNT-------TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF   71 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   71 (253)
                      ....+||+++|++++|||||+++|.+..       +..       ...++.|++.....+.+......+.+|||||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3457999999999999999999998631       100       00122333333223334445567999999999999


Q ss_pred             cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccccccccccccccccccceeeEEEE
Q psy9621          72 HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTAGQERFHTITTSYYRGAMGIMLVY  150 (253)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  150 (253)
                      ......++..+|++|+|+|+++....+ ..+++..+..   .++| +++++||+|+..                      
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~---lgIP~IIVVINKiDLv~----------------------  426 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ---VGVPYIIVFLNKCDMVD----------------------  426 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH---HTCSCEEEEEECCTTCC----------------------
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH---cCCCeEEEEEeeccccc----------------------
Confidence            888888899999999999999864332 2334444333   3688 789999999862                      


Q ss_pred             eccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-----CceEEeeccCC--------CCHHHHHHHH
Q psy9621         151 DITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-----VRFMETSAKAN--------INIEKAFIEL  217 (253)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~--------~gi~~l~~~l  217 (253)
                                              .....  .....+..++.+.++     ++++++||++|        .|+++|++.|
T Consensus       427 ------------------------d~e~l--e~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL  480 (1289)
T 3avx_A          427 ------------------------DEELL--ELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFL  480 (1289)
T ss_dssp             ------------------------CHHHH--HHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHH
T ss_pred             ------------------------chhhH--HHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHH
Confidence                                    11000  012234455565554     68999999999        4688888888


Q ss_pred             HHHHH
Q psy9621         218 ATAIY  222 (253)
Q Consensus       218 ~~~~~  222 (253)
                      ...+.
T Consensus       481 ~~~Ip  485 (1289)
T 3avx_A          481 DSYIP  485 (1289)
T ss_dssp             HHTSC
T ss_pred             hhhcC
Confidence            76553

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.75  E-value=2.1e-18  Score=156.59  Aligned_cols=124  Identities=18%  Similarity=0.203  Sum_probs=87.6

Q ss_pred             CCcc-ccCceeEEEEEcCCCCcHHHHHHHhhc--CCCCC-----------cc-----cCccceeeEEEEEeeCCeEEEEE
Q psy9621           1 MAKK-TYDFLFKLLLIGDSGVGKTCVLFRFSD--DAFNT-----------TF-----ISTIGIDFKIKTVDLKGKKIKLQ   61 (253)
Q Consensus         1 m~~~-~~~~~~ki~vvG~~~~GKStL~~~l~~--~~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~   61 (253)
                      |+.. +.+...+|+|+|++|+|||||+++|+.  +.+..           .+     .+.+.+......+..  ....+.
T Consensus         1 m~~~~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~--~~~~i~   78 (693)
T 2xex_A            1 MAREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW--EGHRVN   78 (693)
T ss_dssp             -CCSSCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE--TTEEEE
T ss_pred             CCCcCCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE--CCeeEE
Confidence            4444 567889999999999999999999984  22210           00     000111111122222  246799


Q ss_pred             EEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621          62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE  130 (253)
Q Consensus        62 l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  130 (253)
                      +|||||+..|......+++.+|++|+|+|+++..+......|.. +..   .++|+++++||+|+...+
T Consensus        79 liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~~~  143 (693)
T 2xex_A           79 IIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLGAN  143 (693)
T ss_dssp             EECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTCC
T ss_pred             EEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccccc
Confidence            99999999998888999999999999999998877776655543 333   479999999999998754

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.74  E-value=1.2e-18  Score=143.58  Aligned_cols=165  Identities=17%  Similarity=0.232  Sum_probs=86.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcC-CCCCcc--------cCccceeeEEEEEeeCCeEEEEEEEeCCCc-------cc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDD-AFNTTF--------ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ-------ER   70 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~   70 (253)
                      +..++|+|+|++|+|||||++++.+. .++...        .++.+.......+...+....+.+|||+|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            45689999999999999999998764 343322        122222222222233344578999999998       55


Q ss_pred             ccccch-------hhhcCc-------------cEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc
Q psy9621          71 FHTITT-------SYYRGA-------------MGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE  130 (253)
Q Consensus        71 ~~~~~~-------~~~~~~-------------d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~  130 (253)
                      +..+..       .+++..             ++++++.+.+. .++..+..  +.+... ....|+++|+||.|+..  
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l-~~~~~iilV~~K~Dl~~--  169 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAI-HNKVNIVPVIAKADTLT--  169 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHH-TTTSCEEEEECCGGGSC--
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHH-HhcCCEEEEEEeCCCCC--
Confidence            555443       444332             23444444322 12333321  222222 25689999999999862  


Q ss_pred             ccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCH
Q psy9621         131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINI  210 (253)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  210 (253)
                                                                  .++.   ....+++.++++.++++++++||+++ |+
T Consensus       170 --------------------------------------------~~e~---~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v  201 (301)
T 2qnr_A          170 --------------------------------------------LKER---ERLKKRILDEIEEHNIKIYHLPDAES-DE  201 (301)
T ss_dssp             --------------------------------------------HHHH---HHHHHHHHHHHHHTTCCCCCCC-------
T ss_pred             --------------------------------------------HHHH---HHHHHHHHHHHHHcCCeEEecCCccc-cc
Confidence                                                        1110   02345677888899999999999999 99


Q ss_pred             HHHHHHHHHHHHhcc
Q psy9621         211 EKAFIELATAIYDKT  225 (253)
Q Consensus       211 ~~l~~~l~~~~~~~~  225 (253)
                      +++|..+.+.+....
T Consensus       202 ~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          202 DEDFKEQTRLLKASI  216 (301)
T ss_dssp             ---CHHHHHHHHTTC
T ss_pred             cHHHHHHHHHhhcCC
Confidence            999999999887644

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.74  E-value=2.4e-18  Score=141.82  Aligned_cols=134  Identities=17%  Similarity=0.148  Sum_probs=108.7

Q ss_pred             HHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChh-hHHHHH
Q psy9621          24 CVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEK-SFDNIL  101 (253)
Q Consensus        24 tL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~  101 (253)
                      +|+.++..+.|. ..+.||+|..+. ..+..+  . .+.+||+  +++|..+++.+++++|++|+|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~--~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDET--G-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCS--S-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCC--C-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            688899988998 888999995544 333222  2 6899999  8999999999999999999999999997 788899


Q ss_pred             HHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhh
Q psy9621         102 KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNS  181 (253)
Q Consensus       102 ~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (253)
                      .|+..+..   .++|+++|+||+|+.                                              ..+.    
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~----------------------------------------------~~~~----  132 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLY----------------------------------------------DEDD----  132 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGC----------------------------------------------CHHH----
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcC----------------------------------------------Cchh----
Confidence            99987755   479999999999986                                              2111    


Q ss_pred             hccchhHHHHHHHhC--CceEEeeccCCCCHHHHHHHHHH
Q psy9621         182 WVCKHRGEAIAREYG--VRFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       182 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                       +  ++..++++.++  ++++++||++|.|++++|..+..
T Consensus       133 -v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          133 -L--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             -H--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             -H--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence             1  34566666666  89999999999999999988753

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.73  E-value=4.9e-17  Score=138.84  Aligned_cols=161  Identities=9%  Similarity=0.103  Sum_probs=109.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc----ccccchhh---hcCcc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----FHTITTSY---YRGAM   83 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~---~~~~d   83 (253)
                      .|+|+|++|||||||++++.+........+........-.+..++ ...+.+||+||..+    +..+...+   ...++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            589999999999999999987643211111101111122233332 24689999999743    23333333   34699


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcc--cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHAN--EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI  161 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      .++.++|++ ...+..+..|..++..+..  ...|.++++||+|+...                                
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--------------------------------  284 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--------------------------------  284 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--------------------------------
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--------------------------------
Confidence            999999998 6667777777777665532  36899999999998611                                


Q ss_pred             HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                     .      ......+..+..+++++.+||+++.|++++++.|.+.+.....
T Consensus       285 ---------------~------~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          285 ---------------E------AVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPP  328 (416)
T ss_dssp             ---------------H------HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred             ---------------H------HHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence                           0      1122333444557899999999999999999999999977543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.72  E-value=2.6e-17  Score=133.71  Aligned_cols=120  Identities=14%  Similarity=0.103  Sum_probs=82.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchh---------
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTS---------   77 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~---------   77 (253)
                      ...+||+|+|.+|+|||||+++|++..+... .+..+.+.......+......+.+|||||...+......         
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            3579999999999999999999998765322 111222222222333334467999999999776544332         


Q ss_pred             hhcCccEEEEEEeCCChhhHHHH-HHHHHHHHHhcccc--cceeEEeeeecccc
Q psy9621          78 YYRGAMGIMLVYDITNEKSFDNI-LKWLRNIDEHANED--VEKMILGKTKDTAG  128 (253)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~--~p~iiv~nK~D~~~  128 (253)
                      ..+.+|++|+|+|++.. ++... ..|+..+......+  .|+++|+||+|+..
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence            13479999999998764 34332 36777776654333  79999999999863

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.72  E-value=1.6e-17  Score=147.00  Aligned_cols=126  Identities=12%  Similarity=0.077  Sum_probs=87.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCC-----------------CCcc---cCccceeeEEEEEeeCCeEEEEEEEeCC
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAF-----------------NTTF---ISTIGIDFKIKTVDLKGKKIKLQIWDTA   66 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~-----------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   66 (253)
                      ....||+|+|+.++|||||..+|+...-                 ..++   ...-|++.....+.+.++...++|+|||
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP  108 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP  108 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence            4678999999999999999999962110                 0000   0111222222233333445779999999


Q ss_pred             CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccc
Q psy9621          67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTIT  136 (253)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  136 (253)
                      |+..|..-....++-+|++|+|+|+...-.-+...-|... ..   .++|++++.||+|..+.+-.+.+.
T Consensus       109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a-~~---~~lp~i~fINK~Dr~~ad~~~~~~  174 (548)
T 3vqt_A          109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVC-RM---RATPVMTFVNKMDREALHPLDVMA  174 (548)
T ss_dssp             CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHH-HH---TTCCEEEEEECTTSCCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHH-HH---hCCceEEEEecccchhcchhHhhh
Confidence            9999999999999999999999999887655555555333 22   579999999999998876443333

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.71  E-value=3.6e-17  Score=137.49  Aligned_cols=170  Identities=14%  Similarity=0.130  Sum_probs=109.5

Q ss_pred             CCcHHHH--HHHhhcCCCCCc-------ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          19 GVGKTCV--LFRFSDDAFNTT-------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        19 ~~GKStL--~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      .+.|--|  +.|+....+.++       ..+|+|++.  ..+.+.  .+.+.+|||+|++.++..+..++++++++||||
T Consensus       157 ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~  232 (362)
T 1zcb_A          157 ESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLV  232 (362)
T ss_dssp             TTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEE
T ss_pred             ccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEE
Confidence            4445444  556665555543       335677654  334443  478999999999999999999999999999999


Q ss_pred             eCCC----------hhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          90 DITN----------EKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        90 d~~~----------~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      |+++          ..++.....|+..+.... ..++|+++++||+|+..++....                        
T Consensus       233 dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~------------------------  288 (362)
T 1zcb_A          233 SSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVV------------------------  288 (362)
T ss_dssp             ETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTC------------------------
T ss_pred             ECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhcccc------------------------
Confidence            9999          778999999999887652 36799999999999964321100                        


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHH--------H---HhCCceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIA--------R---EYGVRFMETSAKANINIEKAFIELATAIYDKTSG  227 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  227 (253)
                              .+..++++...   .....+++..++        +   ..++.+++|||+++.||+++|+.+...+.++.+.
T Consensus       289 --------~l~~~fp~y~g---~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l~  357 (362)
T 1zcb_A          289 --------SIKDYFLEFEG---DPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK  357 (362)
T ss_dssp             --------CGGGTCTTCCS---CTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             --------chhhcCccccC---CCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHHH
Confidence                    00111101000   001223333333        1   3457899999999999999999999998876654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.70  E-value=1.5e-16  Score=144.52  Aligned_cols=118  Identities=15%  Similarity=0.219  Sum_probs=80.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccc----eeeE---EEEEee-------------------------
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIG----IDFK---IKTVDL-------------------------   53 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~----~~~~---~~~~~~-------------------------   53 (253)
                      ...++|+|+|.+|+|||||+|+|++....+ ...|+..    +.+.   ..++.+                         
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            457899999999999999999999876533 2222221    0000   001111                         


Q ss_pred             ---------------------CCeE--EEEEEEeCCCccc---ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHH
Q psy9621          54 ---------------------KGKK--IKLQIWDTAGQER---FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  107 (253)
Q Consensus        54 ---------------------~~~~--~~~~l~Dt~G~~~---~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i  107 (253)
                                           +...  ..+.+|||||...   .......+++.+|++|+|+|++++.+......|...+
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l  226 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI  226 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence                                 1000  3589999999654   3345567889999999999999888777766665444


Q ss_pred             HHhcccccceeEEeeeeccc
Q psy9621         108 DEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus       108 ~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ..   .+.|+++|+||+|+.
T Consensus       227 ~~---~~~~iiiVlNK~Dl~  243 (695)
T 2j69_A          227 KG---RGLTVFFLVNAWDQV  243 (695)
T ss_dssp             TT---SCCCEEEEEECGGGG
T ss_pred             Hh---hCCCEEEEEECcccc
Confidence            32   367899999999986

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.70  E-value=1.2e-17  Score=141.07  Aligned_cols=120  Identities=14%  Similarity=0.152  Sum_probs=78.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccc-----eee------------------------------------
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIG-----IDF------------------------------------   46 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~-----~~~------------------------------------   46 (253)
                      ....|+|+|++|||||||+++|.+..+.+....++.     +.+                                    
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            456999999999999999999998776332221110     000                                    


Q ss_pred             -----------EEEEEee-CCeEEEEEEEeCCCcccc-------------cccchhhhcCccEEEEEEeCCChhhHHHHH
Q psy9621          47 -----------KIKTVDL-KGKKIKLQIWDTAGQERF-------------HTITTSYYRGAMGIMLVYDITNEKSFDNIL  101 (253)
Q Consensus        47 -----------~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~  101 (253)
                                 ....+.+ ......+.+|||||...+             ..+...+++.+|++|+++|.++.....  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                       0000110 011235899999998766             455677899999999999876543221  2


Q ss_pred             HHHHHHHHhcccccceeEEeeeeccccc
Q psy9621         102 KWLRNIDEHANEDVEKMILGKTKDTAGQ  129 (253)
Q Consensus       102 ~~~~~i~~~~~~~~p~iiv~nK~D~~~~  129 (253)
                      .|+..+......+.|+++|+||+|+...
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~  218 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDK  218 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCT
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCC
Confidence            3444444444467899999999999743

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.70  E-value=2.4e-16  Score=133.59  Aligned_cols=85  Identities=14%  Similarity=0.261  Sum_probs=71.8

Q ss_pred             ccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCC----------hhhHHHHHHHHHHHHHh
Q psy9621          41 TIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITN----------EKSFDNILKWLRNIDEH  110 (253)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~  110 (253)
                      |+|++.  ..+.+.  .+.+++|||+|++.++.++..++++++++|||||+++          ..+|.....|+..+...
T Consensus       204 TiGi~~--~~~~~~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~  279 (402)
T 1azs_C          204 TSGIFE--TKFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN  279 (402)
T ss_dssp             CCSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred             eeeeEE--EEeecC--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence            455544  334444  3789999999999999999999999999999999999          88999999999998775


Q ss_pred             c-ccccceeEEeeeeccccc
Q psy9621         111 A-NEDVEKMILGKTKDTAGQ  129 (253)
Q Consensus       111 ~-~~~~p~iiv~nK~D~~~~  129 (253)
                      . ..++|++|++||+|+..+
T Consensus       280 ~~~~~~piiLvgNK~DL~~~  299 (402)
T 1azs_C          280 RWLRTISVILFLNKQDLLAE  299 (402)
T ss_dssp             TTCSSCCEEEEEECHHHHHH
T ss_pred             ccCCCCeEEEEEEChhhhhh
Confidence            3 368999999999998643

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.68  E-value=8.6e-17  Score=136.97  Aligned_cols=85  Identities=19%  Similarity=0.244  Sum_probs=48.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcc------cCccceeeEEEE---------------EeeCC-eEEEEEEEeCCC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTF------ISTIGIDFKIKT---------------VDLKG-KKIKLQIWDTAG   67 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~------~~~~~~~~~~~~---------------~~~~~-~~~~~~l~Dt~G   67 (253)
                      +||+++|.+|||||||+|+|.+.......      .+..+..+....               ..+++ ..+.+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987632211      122222111000               01122 247799999999


Q ss_pred             ccc----ccccch---hhhcCccEEEEEEeCCCh
Q psy9621          68 QER----FHTITT---SYYRGAMGIMLVYDITNE   94 (253)
Q Consensus        68 ~~~----~~~~~~---~~~~~~d~~ilv~d~~~~   94 (253)
                      ...    ...+..   .+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            853    333333   346899999999999875

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.67  E-value=6.9e-17  Score=138.01  Aligned_cols=161  Identities=16%  Similarity=0.217  Sum_probs=82.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCC-Ccc-------cCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc-----
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTF-------ISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT-----   73 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----   73 (253)
                      +..++|+|+|++|||||||+++|.+..+. ..+       .++.+.......+...+....+.+||++|...+..     
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            45678999999999999999999986653 211       12222222111122223345789999999865311     


Q ss_pred             --------------------cchhhhcCccEEEEEEeCCCh-hhHHHHH-HHHHHHHHhcccccceeEEeeeeccccccc
Q psy9621          74 --------------------ITTSYYRGAMGIMLVYDITNE-KSFDNIL-KWLRNIDEHANEDVEKMILGKTKDTAGQER  131 (253)
Q Consensus        74 --------------------~~~~~~~~~d~~ilv~d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~  131 (253)
                                          +.+.++.++++.+++|.+..- .++.... .|+..+.    .++|+++|+||+|+..   
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~---  181 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLT---  181 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCcc---
Confidence                                122345566665555555432 3444443 5655553    3789999999999862   


Q ss_pred             cccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhcc--chhHHHHHHHhCCceEEeeccCCCC
Q psy9621         132 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC--KHRGEAIAREYGVRFMETSAKANIN  209 (253)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~g  209 (253)
                                                                 ..+     +.  ...+.+.+..++++++++|++++.+
T Consensus       182 -------------------------------------------~~e-----v~~~k~~i~~~~~~~~i~~~~~sa~~~~~  213 (418)
T 2qag_C          182 -------------------------------------------PEE-----CQQFKKQIMKEIQEHKIKIYEFPETDDEE  213 (418)
T ss_dssp             -------------------------------------------HHH-----HHHHHHHHHHHHHHHTCCCCCCC------
T ss_pred             -------------------------------------------HHH-----HHHHHHHHHHHHHHcCCeEEeCCCCCCcC
Confidence                                                       111     22  2456777788899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy9621         210 IEKAFIELATAIY  222 (253)
Q Consensus       210 i~~l~~~l~~~~~  222 (253)
                      ++++|..+...+.
T Consensus       214 v~~~~~~l~~~iP  226 (418)
T 2qag_C          214 ENKLVKKIKDRLP  226 (418)
T ss_dssp             -----------CC
T ss_pred             HHHHHHHHHhhCC
Confidence            9998887776544

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.67  E-value=8.7e-18  Score=151.38  Aligned_cols=214  Identities=14%  Similarity=0.128  Sum_probs=123.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc--CCCC------Cc-----ccC---ccceeeEEEEEeeCCeEEEEEEEeCCCccccc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD--DAFN------TT-----FIS---TIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH   72 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~--~~~~------~~-----~~~---~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   72 (253)
                      ..||+++|+.++|||||..+|+.  +...      ..     +.+   .-|++.....+.+..+...++++|||||.+|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            57899999999999999999862  1111      00     000   11334443444455566779999999999999


Q ss_pred             ccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeE-----
Q psy9621          73 TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIM-----  147 (253)
Q Consensus        73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-----  147 (253)
                      ......++-+|++|+|+|+...-.-+....|... ..   .++|.+++.||+|..+.+-.+.+.+.........+     
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a-~~---~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~  157 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL-RK---MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV  157 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHH-HH---HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHH-HH---cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccccee
Confidence            9999999999999999999876544443444333 22   46899999999999877644333322111110000     


Q ss_pred             ------EEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         148 ------LVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       148 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                            ...+....+..+.+.+..+++.+....................+....-.|++..||+++.|++.|++.+...+
T Consensus       158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~  237 (638)
T 3j25_A          158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF  237 (638)
T ss_dssp             CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred             EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence                  00001111112222211111111110000000000111111222222237999999999999999999998877


Q ss_pred             HhccC
Q psy9621         222 YDKTS  226 (253)
Q Consensus       222 ~~~~~  226 (253)
                      .....
T Consensus       238 p~p~~  242 (638)
T 3j25_A          238 YSSTH  242 (638)
T ss_dssp             CCSGG
T ss_pred             cCccc
Confidence            65443

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.66  E-value=2.3e-16  Score=130.81  Aligned_cols=67  Identities=13%  Similarity=0.238  Sum_probs=45.1

Q ss_pred             EEEEEEeCCCccc-------------ccccchhhhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeee
Q psy9621          58 IKLQIWDTAGQER-------------FHTITTSYYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKT  123 (253)
Q Consensus        58 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK  123 (253)
                      ..+.+|||||...             +......+++.+|++|+|+|.++.. .-.....+...+   ...+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence            4699999999753             3445566889999999999974332 111111222222   2357899999999


Q ss_pred             eccc
Q psy9621         124 KDTA  127 (253)
Q Consensus       124 ~D~~  127 (253)
                      +|+.
T Consensus       208 ~Dl~  211 (315)
T 1jwy_B          208 LDLM  211 (315)
T ss_dssp             TTSS
T ss_pred             cccC
Confidence            9986

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.65  E-value=2e-16  Score=124.40  Aligned_cols=157  Identities=16%  Similarity=0.094  Sum_probs=92.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceee--------------EEEEEee----------------CCe
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDF--------------KIKTVDL----------------KGK   56 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~   56 (253)
                      ....+|+|+|.+|||||||+++|............+..++              ....+..                ...
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS  107 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence            3567999999999999999999986422110000000010              0011111                112


Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccc
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTIT  136 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  136 (253)
                      ...+.+|||+|+.....   .+....+.+|+|+|+++....  ...+...      .+.|+++++||+|+...       
T Consensus       108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~~------~~~~~iiv~NK~Dl~~~-------  169 (221)
T 2wsm_A          108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPEI------FRVADLIVINKVALAEA-------  169 (221)
T ss_dssp             TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHHH------HHTCSEEEEECGGGHHH-------
T ss_pred             CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhhh------hhcCCEEEEecccCCcc-------
Confidence            35688999998511111   111356889999998765421  1111111      25899999999998621       


Q ss_pred             ccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh--CCceEEeeccCCCCHHHHH
Q psy9621         137 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY--GVRFMETSAKANINIEKAF  214 (253)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~  214 (253)
                                                             ..     .......+..+..  +.+++++||++|.|++++|
T Consensus       170 ---------------------------------------~~-----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~  205 (221)
T 2wsm_A          170 ---------------------------------------VG-----ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWI  205 (221)
T ss_dssp             ---------------------------------------HT-----CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHH
T ss_pred             ---------------------------------------hh-----hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHH
Confidence                                                   00     1122333344443  3789999999999999999


Q ss_pred             HHHHHHHHhcc
Q psy9621         215 IELATAIYDKT  225 (253)
Q Consensus       215 ~~l~~~~~~~~  225 (253)
                      +.|.+.+....
T Consensus       206 ~~l~~~~~~~~  216 (221)
T 2wsm_A          206 DFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHHC---
T ss_pred             HHHHHHHHHHH
Confidence            99998876543

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.64  E-value=1.1e-15  Score=139.32  Aligned_cols=127  Identities=17%  Similarity=0.155  Sum_probs=86.9

Q ss_pred             CCcc-ccCceeEEEEEcCCCCcHHHHHHHhhcC--------CCCCc-----c---cCccceeeE--EEEEeeC-----Ce
Q psy9621           1 MAKK-TYDFLFKLLLIGDSGVGKTCVLFRFSDD--------AFNTT-----F---ISTIGIDFK--IKTVDLK-----GK   56 (253)
Q Consensus         1 m~~~-~~~~~~ki~vvG~~~~GKStL~~~l~~~--------~~~~~-----~---~~~~~~~~~--~~~~~~~-----~~   56 (253)
                      |+.. |-+...||+|+|+.++|||||..+|+..        .....     +   ...-|++..  ..++.+.     .+
T Consensus         4 m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~   83 (709)
T 4fn5_A            4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD   83 (709)
T ss_dssp             --CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC
T ss_pred             CCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence            5654 5588999999999999999999998621        11100     0   011122222  2233332     23


Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER  131 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~  131 (253)
                      .+.++++|||||.+|..-....++-+|++|+|+|+...-.-+...-|.+...    .++|.++++||+|....+-
T Consensus        84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iNKiDr~~a~~  154 (709)
T 4fn5_A           84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVNKMDRQGANF  154 (709)
T ss_dssp             CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEECSSSTTCCH
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEccccccCccH
Confidence            6889999999999999999999999999999999987665555455544432    4799999999999987653

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.62  E-value=2e-16  Score=133.29  Aligned_cols=119  Identities=15%  Similarity=0.159  Sum_probs=70.8

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcc------cCcc-------------------------------------
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTF------ISTI-------------------------------------   42 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~------~~~~-------------------------------------   42 (253)
                      .....+|+|+|.+|||||||+++|.+..+.+..      .|+.                                     
T Consensus        28 ~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~  107 (353)
T 2x2e_A           28 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  107 (353)
T ss_dssp             GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence            345679999999999999999999987764221      1220                                     


Q ss_pred             ------ceeeEEEEEeeC-CeEEEEEEEeCCCccc-------------ccccchhhhcCccEEEE-EEeCCChhhHHHHH
Q psy9621          43 ------GIDFKIKTVDLK-GKKIKLQIWDTAGQER-------------FHTITTSYYRGAMGIML-VYDITNEKSFDNIL  101 (253)
Q Consensus        43 ------~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~il-v~d~~~~~s~~~~~  101 (253)
                            |+......+.+. .....+.+|||||...             +..+...|++.++.+|+ |.|.+....-....
T Consensus       108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~  187 (353)
T 2x2e_A          108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  187 (353)
T ss_dssp             HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred             hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence                  000000011111 1135699999999632             34455667766665555 55655432211212


Q ss_pred             HHHHHHHHhcccccceeEEeeeeccc
Q psy9621         102 KWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus       102 ~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .++..   ....+.|+++|+||+|+.
T Consensus       188 ~i~~~---~~~~~~~~i~V~NK~Dl~  210 (353)
T 2x2e_A          188 KVAKE---VDPQGQRTIGVITKLDLM  210 (353)
T ss_dssp             HHHHH---HCTTCTTEEEEEECGGGS
T ss_pred             HHHHH---hCcCCCceEEEecccccc
Confidence            23333   333579999999999986

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.61  E-value=9.5e-18  Score=132.51  Aligned_cols=155  Identities=19%  Similarity=0.171  Sum_probs=91.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeE------------EEEEeeC-Ce-----------------
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFK------------IKTVDLK-GK-----------------   56 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~-----------------   56 (253)
                      ...++|+|+|++|||||||+++|....+...+.++++.++.            ...+.+. +.                 
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  115 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN  115 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence            35789999999999999999999976555444444444432            1222221 11                 


Q ss_pred             --EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccc
Q psy9621          57 --KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHT  134 (253)
Q Consensus        57 --~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~  134 (253)
                        ...+.++|++|.-...   ..+-...+..+.++|.........  .....      ...|.++++||+|+...     
T Consensus       116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~-----  179 (226)
T 2hf9_A          116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADA-----  179 (226)
T ss_dssp             GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHH-----
T ss_pred             cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCch-----
Confidence              1145566666631110   011123344566666432211100  00011      14788999999998621     


Q ss_pred             ccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh--CCceEEeeccCCCCHHH
Q psy9621         135 ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY--GVRFMETSAKANINIEK  212 (253)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~  212 (253)
                                                               ..     .......++++.+  +.+++++||++|.|+++
T Consensus       180 -----------------------------------------~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  213 (226)
T 2hf9_A          180 -----------------------------------------VG-----ADIKKMENDAKRINPDAEVVLLSLKTMEGFDK  213 (226)
T ss_dssp             -----------------------------------------HT-----CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHH
T ss_pred             -----------------------------------------hH-----HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHH
Confidence                                                     10     1223344555544  47999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy9621         213 AFIELATAIYD  223 (253)
Q Consensus       213 l~~~l~~~~~~  223 (253)
                      +|+.|.+.+..
T Consensus       214 l~~~l~~~~~~  224 (226)
T 2hf9_A          214 VLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999987754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.60  E-value=3e-15  Score=138.64  Aligned_cols=119  Identities=16%  Similarity=0.161  Sum_probs=87.4

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCC------------CCC----ccc--CccceeeEEEEEe------------eCC
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDA------------FNT----TFI--STIGIDFKIKTVD------------LKG   55 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~------------~~~----~~~--~~~~~~~~~~~~~------------~~~   55 (253)
                      .+..+||+|+|+.|+|||||+++|+...            +..    ...  .|+........+.            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            4567899999999999999999998531            100    001  1222222222222            133


Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccc
Q psy9621          56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG  128 (253)
Q Consensus        56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  128 (253)
                      ....+++|||||+.+|...+..+++.+|++|+|+|+++..++.....|....    ..++|+++++||+|+..
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~----~~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL----GERIKPVVVINKVDRAL  164 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----HcCCCeEEEEECCCcch
Confidence            4788999999999999999999999999999999999988888766665433    24789999999999974

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.59  E-value=1.2e-14  Score=121.66  Aligned_cols=83  Identities=18%  Similarity=0.157  Sum_probs=55.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCccc--CccceeeEEEEEeeCCe---------------EEEEEEEeCCCcccc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFI--STIGIDFKIKTVDLKGK---------------KIKLQIWDTAGQERF   71 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~   71 (253)
                      .++|+++|.+|||||||+++|.+..+.....  .|++.+..  .+.+++.               ...+.+|||||..++
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~   79 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence            3689999999999999999999866432211  12222221  2333332               156999999998765


Q ss_pred             c----ccch---hhhcCccEEEEEEeCCC
Q psy9621          72 H----TITT---SYYRGAMGIMLVYDITN   93 (253)
Q Consensus        72 ~----~~~~---~~~~~~d~~ilv~d~~~   93 (253)
                      .    .+..   .+++.+|++++|+|+++
T Consensus        80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           80 ASKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence            3    3333   34789999999999986

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.58  E-value=1.7e-15  Score=127.55  Aligned_cols=107  Identities=9%  Similarity=0.060  Sum_probs=69.8

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccc
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTIT  136 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  136 (253)
                      ...+.+|||||...   ........+|++|+|+|.+..+.+..+..       . -.+.|.++|+||+|+......    
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~-------~-~~~~p~ivVlNK~Dl~~~~~~----  235 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK-------G-VLELADIVVVNKADGEHHKEA----  235 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT-------T-SGGGCSEEEEECCCGGGHHHH----
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH-------h-HhhcCCEEEEECCCCcChhHH----
Confidence            35789999999532   23345689999999999876554422221       1 135799999999998621000    


Q ss_pred             ccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH-------HhCCceEEeeccCCCC
Q psy9621         137 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR-------EYGVRFMETSAKANIN  209 (253)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~g  209 (253)
                                            .                       ....+......       .++.+++++||++|.|
T Consensus       236 ----------------------~-----------------------~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~G  270 (355)
T 3p32_A          236 ----------------------R-----------------------LAARELSAAIRLIYPREALWRPPVLTMSAVEGRG  270 (355)
T ss_dssp             ----------------------H-----------------------HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBS
T ss_pred             ----------------------H-----------------------HHHHHHHHHHhhccccccCCCCceEEEEcCCCCC
Confidence                                  0                       00011111111       1257899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy9621         210 IEKAFIELATAIYD  223 (253)
Q Consensus       210 i~~l~~~l~~~~~~  223 (253)
                      ++++++.|.+.+..
T Consensus       271 i~~L~~~i~~~~~~  284 (355)
T 3p32_A          271 LAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988765

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.55  E-value=6e-15  Score=130.61  Aligned_cols=125  Identities=15%  Similarity=0.170  Sum_probs=84.3

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCC---CcccCccceeeEEEE------------------------------
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFN---TTFISTIGIDFKIKT------------------------------   50 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~---~~~~~~~~~~~~~~~------------------------------   50 (253)
                      ...+..++|+|+|.+|+|||||+|+|++..+.   ....++... .....                              
T Consensus        60 ~~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~  138 (550)
T 2qpt_A           60 ADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNT  138 (550)
T ss_dssp             TTTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEEEECCSSSEEECCC------------------C
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEEEEECCcccccCCceeeecCcccHHHHhhhccc
Confidence            34566789999999999999999999987763   222222110 00000                              


Q ss_pred             -------EeeCCe-EEEEEEEeCCCccc-----------ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhc
Q psy9621          51 -------VDLKGK-KIKLQIWDTAGQER-----------FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA  111 (253)
Q Consensus        51 -------~~~~~~-~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~  111 (253)
                             +.++.. ...+.+|||||...           |......++..+|++|+|+|+++.........|+..+..  
T Consensus       139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--  216 (550)
T 2qpt_A          139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--  216 (550)
T ss_dssp             CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--
T ss_pred             ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--
Confidence                   000000 02589999999864           334556678899999999999886545555666665533  


Q ss_pred             ccccceeEEeeeecccccccc
Q psy9621         112 NEDVEKMILGKTKDTAGQERF  132 (253)
Q Consensus       112 ~~~~p~iiv~nK~D~~~~~~~  132 (253)
                       .+.|+++|+||+|+...+..
T Consensus       217 -~~~pvilVlNK~Dl~~~~el  236 (550)
T 2qpt_A          217 -HEDKIRVVLNKADMVETQQL  236 (550)
T ss_dssp             -CGGGEEEEEECGGGSCHHHH
T ss_pred             -cCCCEEEEEECCCccCHHHH
Confidence             46899999999999865443

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.51  E-value=1.1e-13  Score=116.42  Aligned_cols=78  Identities=18%  Similarity=0.215  Sum_probs=54.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCC------cccCccceeeEEEEEeeCC-------------------eEEEEEEEe
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNT------TFISTIGIDFKIKTVDLKG-------------------KKIKLQIWD   64 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~D   64 (253)
                      ++|+++|.+|||||||++++.+.....      +..|+++.      ..+.+                   ....+.+||
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~------~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD   75 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV------VPLEDERLYALQRTFAKGERVPPVVPTHVEFVD   75 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE------EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee------EecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence            589999999999999999998754211      12233332      12221                   235699999


Q ss_pred             CCCccccc----ccchh---hhcCccEEEEEEeCCC
Q psy9621          65 TAGQERFH----TITTS---YYRGAMGIMLVYDITN   93 (253)
Q Consensus        65 t~G~~~~~----~~~~~---~~~~~d~~ilv~d~~~   93 (253)
                      |||..++.    .+...   .++.+|++++|+|+++
T Consensus        76 tpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           76 IAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             CCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            99987652    33333   4789999999999985

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.49  E-value=3.5e-13  Score=113.38  Aligned_cols=208  Identities=14%  Similarity=0.098  Sum_probs=114.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc----cccch---hhh
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF----HTITT---SYY   79 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~~~---~~~   79 (253)
                      ....+|+++|.||||||||+|+|.+........|....+...-.+.+.+  .++.++||||..+-    .++..   ..+
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i  147 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVA  147 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence            3456899999999999999999998664433333322333333455554  56899999997432    22222   345


Q ss_pred             cCccEEEEEEeCCChhhHHHHHHHHHHHHHhc--ccccceeEEeeeeccccccccccccc-------------cccccce
Q psy9621          80 RGAMGIMLVYDITNEKSFDNILKWLRNIDEHA--NEDVEKMILGKTKDTAGQERFHTITT-------------SYYRGAM  144 (253)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~-------------~~~~~~~  144 (253)
                      +.+|++++|+|++++..  .......++....  -...|.+++.||.|..+-........             .+-....
T Consensus       148 ~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~k  225 (376)
T 4a9a_A          148 RTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSA  225 (376)
T ss_dssp             HHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSE
T ss_pred             HhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCC
Confidence            78999999999998743  2222223332221  14578899999999865432221111             1223344


Q ss_pred             eeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         145 GIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                      ..+...+++..+. .+..   ........+ .......+.....+++..... -.++++|+..+.|+++|...+...+--
T Consensus       226 pv~~~~nv~eddl-~d~~---~~~~~~~~p-~i~v~nKid~~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~L  300 (376)
T 4a9a_A          226 EIAFRCDATVDDL-IDVL---EASSRRYMP-AIYVLNKIDSLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNL  300 (376)
T ss_dssp             EEEECSCCCHHHH-HHHH---TTTTCEEEC-EEEEEECGGGSCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHCC
T ss_pred             CeeecccCCHHHH-HHHH---HHHHhhccc-eEEEEecccccCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcCC
Confidence            4555555543322 2211   110100000 000000011111222222222 357899999999999999988887643

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.48  E-value=1.3e-13  Score=115.63  Aligned_cols=59  Identities=10%  Similarity=0.119  Sum_probs=36.2

Q ss_pred             EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ..+.++||+|....   .......+|++++|+|++.+.....+..   .+     ...|.++++||+|+.
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~  225 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGD  225 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGG
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCC
Confidence            46899999996321   2345678999999999987643222211   11     246889999999985

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.46  E-value=6.1e-13  Score=107.14  Aligned_cols=135  Identities=14%  Similarity=-0.033  Sum_probs=72.6

Q ss_pred             EEEEEEeCCCcccccccch------hhhcCccEEEEEEeCCChhhHHHHHHHHHHH-HHhcccccceeEEeeeecccccc
Q psy9621          58 IKLQIWDTAGQERFHTITT------SYYRGAMGIMLVYDITNEKSFDNILKWLRNI-DEHANEDVEKMILGKTKDTAGQE  130 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~iiv~nK~D~~~~~  130 (253)
                      +.+.+|||||.........      ..+.. +++|+++|.....+........... ......++|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            4799999999876533221      13455 7888888875432222221111111 11112468999999999986221


Q ss_pred             ccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcC-----CCchhhhhhccchhHHHHHHHhC--CceEEee
Q psy9621         131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-----EDPQVVNSWVCKHRGEAIAREYG--VRFMETS  203 (253)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~S  203 (253)
                                                ...++.+++.+......     +....    .......++++.++  .+++++|
T Consensus       188 --------------------------~~~~~~~~l~~~~~~~~~l~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~S  237 (262)
T 1yrb_A          188 --------------------------EKERHRKYFEDIDYLTARLKLDPSMQG----LMAYKMCSMMTEVLPPVRVLYLS  237 (262)
T ss_dssp             --------------------------HHHHHHHHHHCHHHHHHHHHHCCSHHH----HHHHHHHHHHHHHSCCCCCEECC
T ss_pred             --------------------------cHHHHHHHHhChHHHHHHHhccccccc----hhHhHHHHHHHHhcCcccceEEE
Confidence                                      11222222221111000     00000    00001112234444  5899999


Q ss_pred             ccCCCCHHHHHHHHHHHHHh
Q psy9621         204 AKANINIEKAFIELATAIYD  223 (253)
Q Consensus       204 a~~~~gi~~l~~~l~~~~~~  223 (253)
                      |+++.|++++++.|.+.+..
T Consensus       238 A~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          238 AKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             TTTCTTHHHHHHHHHHHHHH
T ss_pred             ecCcccHHHHHHHHHHHhcc
Confidence            99999999999999887754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.46  E-value=4.1e-14  Score=118.49  Aligned_cols=106  Identities=15%  Similarity=0.093  Sum_probs=65.0

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccc
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTIT  136 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  136 (253)
                      ...+.+|||||......   .....+|++++|+|.+....+..+..   .     ..+.|.++|+||+|+.+...     
T Consensus       148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~-----~~~~p~ivv~NK~Dl~~~~~-----  211 (341)
T 2p67_A          148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---G-----LMEVADLIVINKDDGDNHTN-----  211 (341)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---H-----HHHHCSEEEECCCCTTCHHH-----
T ss_pred             CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---h-----hhcccCEEEEECCCCCChHH-----
Confidence            35699999999765432   34689999999999876543211111   0     02578999999999862100     


Q ss_pred             ccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH-------hCCceEEeeccCCCC
Q psy9621         137 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE-------YGVRFMETSAKANIN  209 (253)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~g  209 (253)
                                           +.   .+.                    ...++....       +..+++++||++|.|
T Consensus       212 ---------------------~~---~~~--------------------~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~g  247 (341)
T 2p67_A          212 ---------------------VA---IAR--------------------HMYESALHILRRKYDEWQPRVLTCSALEKRG  247 (341)
T ss_dssp             ---------------------HH---HHH--------------------HHHHHHHHHSCCSBTTBCCEEEECBGGGTBS
T ss_pred             ---------------------HH---HHH--------------------HHHHHHHHhccccccCCCCcEEEeeCCCCCC
Confidence                                 00   000                    011111111       235789999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy9621         210 IEKAFIELATAIY  222 (253)
Q Consensus       210 i~~l~~~l~~~~~  222 (253)
                      ++++++.|...+.
T Consensus       248 i~~L~~~l~~~~~  260 (341)
T 2p67_A          248 IDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998765

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.40  E-value=1.1e-12  Score=107.98  Aligned_cols=97  Identities=18%  Similarity=0.115  Sum_probs=78.7

Q ss_pred             cccccccchhhhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceee
Q psy9621          68 QERFHTITTSYYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGI  146 (253)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  146 (253)
                      ++++..+.+.++.++|++++|+|++++. ++..+.+|+..+..   .++|+++|+||+|+.                   
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~-------------------  123 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLL-------------------  123 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGC-------------------
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCC-------------------
Confidence            6778888888999999999999999986 89888999887654   579999999999986                   


Q ss_pred             EEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhcc-chhHHHHHHHhCCceEEeeccCCCCHHHHHHHHH
Q psy9621         147 MLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC-KHRGEAIAREYGVRFMETSAKANINIEKAFIELA  218 (253)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  218 (253)
                                                 +...     +. .....++++.++++++++||++|.|+++|+..+.
T Consensus       124 ---------------------------~~~~-----v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          124 ---------------------------NEEE-----KKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             ---------------------------CHHH-----HHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             ---------------------------Cccc-----cHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence                                       1111     11 2344566677789999999999999999998753

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.34  E-value=2.3e-12  Score=116.84  Aligned_cols=118  Identities=16%  Similarity=0.178  Sum_probs=72.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCcc-------------------------------------------
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTI-------------------------------------------   42 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~-------------------------------------------   42 (253)
                      ....+|+|+|.+++|||||+|+|++..+-+ ...++.                                           
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            456799999999999999999999876522 111000                                           


Q ss_pred             -----ceeeEEEEEeeC-CeEEEEEEEeCCCccc-------------ccccchhhh-cCccEEEEEEeCCChhhHHHHHH
Q psy9621          43 -----GIDFKIKTVDLK-GKKIKLQIWDTAGQER-------------FHTITTSYY-RGAMGIMLVYDITNEKSFDNILK  102 (253)
Q Consensus        43 -----~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~-------------~~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~  102 (253)
                           +++.....+.+. .....+.++||||...             +..+...++ ..+|++++|+|++....-.....
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                 000000111110 0122478999999643             122333444 57899999999987543333223


Q ss_pred             HHHHHHHhcccccceeEEeeeeccc
Q psy9621         103 WLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus       103 ~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ++..+.   ..+.|+++|+||+|+.
T Consensus       209 ll~~L~---~~g~pvIlVlNKiDlv  230 (772)
T 3zvr_A          209 IAKEVD---PQGQRTIGVITKLDLM  230 (772)
T ss_dssp             HHHHHC---TTCSSEEEEEECTTSS
T ss_pred             HHHHHH---hcCCCEEEEEeCcccC
Confidence            333332   3578999999999987

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.32  E-value=6.8e-12  Score=104.70  Aligned_cols=104  Identities=10%  Similarity=0.064  Sum_probs=63.1

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccccccccc
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTIT  136 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  136 (253)
                      ...+.++||+|..+-.   ......+|.+++++|.+..+....+...   +     ..+|.++++||+|+.         
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i-----~~~~~ivvlNK~Dl~---------  206 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---I-----FELADMIAVNKADDG---------  206 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---H-----HHHCSEEEEECCSTT---------
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---H-----hccccEEEEEchhcc---------
Confidence            3569999999975321   2345789999999998654322111111   1     135778888999974         


Q ss_pred             ccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH----------hCCceEEeeccC
Q psy9621         137 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE----------YGVRFMETSAKA  206 (253)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~  206 (253)
                                                           ....     ......+.+...          +..+++.+||++
T Consensus       207 -------------------------------------~~~~-----~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~  244 (337)
T 2qm8_A          207 -------------------------------------DGER-----RASAAASEYRAALHILTPPSATWTPPVVTISGLH  244 (337)
T ss_dssp             -------------------------------------CCHH-----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTT
T ss_pred             -------------------------------------Cchh-----HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCC
Confidence                                                 1111     111111222211          135789999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy9621         207 NINIEKAFIELATAIY  222 (253)
Q Consensus       207 ~~gi~~l~~~l~~~~~  222 (253)
                      +.|++++++.|.+...
T Consensus       245 g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          245 GKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999988764

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.21  E-value=1.1e-11  Score=104.80  Aligned_cols=90  Identities=17%  Similarity=0.145  Sum_probs=50.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCe---------------EEEEEEEeCCCccccc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGK---------------KIKLQIWDTAGQERFH   72 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~   72 (253)
                      ..++|+++|.+|||||||++++.+..+.....|....+.....+.+.+.               ...+.+|||||...+.
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            4579999999999999999999987653332332222333333444332               2359999999987643


Q ss_pred             c-------cchhhhcCccEEEEEEeCCChhhH
Q psy9621          73 T-------ITTSYYRGAMGIMLVYDITNEKSF   97 (253)
Q Consensus        73 ~-------~~~~~~~~~d~~ilv~d~~~~~s~   97 (253)
                      .       ....+++.+|++++|+|+++..++
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC------
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence            3       334567899999999999865443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.20  E-value=3.1e-10  Score=95.99  Aligned_cols=86  Identities=20%  Similarity=0.167  Sum_probs=56.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCC-CCcccCccceeeEEEEEeeCCe---------------EEEEEEEeCCCcccc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAF-NTTFISTIGIDFKIKTVDLKGK---------------KIKLQIWDTAGQERF   71 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~   71 (253)
                      ...+|+++|++|||||||+++|.+... .....|....+...-.+.+.+.               ...+.+||+||....
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            356899999999999999999998665 3332332222332233444431               135899999996432


Q ss_pred             -------cccchhhhcCccEEEEEEeCCC
Q psy9621          72 -------HTITTSYYRGAMGIMLVYDITN   93 (253)
Q Consensus        72 -------~~~~~~~~~~~d~~ilv~d~~~   93 (253)
                             .+.....++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   2223345689999999999864

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.20  E-value=8.2e-12  Score=95.47  Aligned_cols=109  Identities=7%  Similarity=0.001  Sum_probs=69.2

Q ss_pred             CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHH---HHHhc--ccccceeEEeeee-cccccccccccccccc
Q psy9621          67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN---IDEHA--NEDVEKMILGKTK-DTAGQERFHTITTSYY  140 (253)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~---i~~~~--~~~~p~iiv~nK~-D~~~~~~~~~~~~~~~  140 (253)
                      |+..++.+|+.|+.++|++|||+|.++++.++ ....+.+   +....  ..+.|++|++||. |+.++-+..++     
T Consensus       111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI-----  184 (227)
T 3l82_B          111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYL-----  184 (227)
T ss_dssp             ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHH-----
T ss_pred             cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHH-----
Confidence            78889999999999999999999999986554 3443322   22222  1679999999995 67533221000     


Q ss_pred             ccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         141 RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                                             ...+.   ...+  ...+.+..|||++|+|+.+.++||...
T Consensus       185 ---------------------------------------~e~L~---L~~l--~R~W~Iq~csA~TGeGL~EGLdWL~~~  220 (227)
T 3l82_B          185 ---------------------------------------AHELH---LNLL--NHPWLVQDTEAETLTGFLNGIEWILEE  220 (227)
T ss_dssp             ---------------------------------------HHHTT---GGGG--CSCEEEEEEETTTCTTHHHHHHHHTTT
T ss_pred             ---------------------------------------HHHcC---CcCC--CCCEEEEEeECCCCcCHHHHHHHHHHH
Confidence                                                   00011   1111  235678999999999999999999877


Q ss_pred             HHhcc
Q psy9621         221 IYDKT  225 (253)
Q Consensus       221 ~~~~~  225 (253)
                      +..++
T Consensus       221 l~~k~  225 (227)
T 3l82_B          221 VESKR  225 (227)
T ss_dssp             TTTC-
T ss_pred             HHhhc
Confidence            75543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.03  E-value=1.2e-10  Score=93.36  Aligned_cols=111  Identities=7%  Similarity=0.010  Sum_probs=73.4

Q ss_pred             CCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHH---HHHHhc--ccccceeEEeee-ecccccccccccccc
Q psy9621          65 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR---NIDEHA--NEDVEKMILGKT-KDTAGQERFHTITTS  138 (253)
Q Consensus        65 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~---~i~~~~--~~~~p~iiv~nK-~D~~~~~~~~~~~~~  138 (253)
                      .+|+..++.+|+.|+.++|++|+|+|.+|++.++ ....+.   .+....  ..+.|++|++|| .|+.++.+..++   
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI---  269 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYL---  269 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHH---
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHH---
Confidence            3578889999999999999999999999987655 333222   232221  268999999997 587643221000   


Q ss_pred             ccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHH
Q psy9621         139 YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELA  218 (253)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  218 (253)
                                                               ...+..   ..+  .....+..|||++|+|+.+-+++|.
T Consensus       270 -----------------------------------------~e~L~L---~~l--~r~W~Iq~csA~tGeGL~EGldWL~  303 (312)
T 3l2o_B          270 -----------------------------------------AHELHL---NLL--NHPWLVQDTEAETLTGFLNGIEWIL  303 (312)
T ss_dssp             -----------------------------------------HHHTTG---GGG--CSCEEEEEEETTTCTTHHHHHHHHH
T ss_pred             -----------------------------------------HHHcCC---ccC--CCcEEEEecccCCCcCHHHHHHHHH
Confidence                                                     000111   111  2346789999999999999999999


Q ss_pred             HHHHhcc
Q psy9621         219 TAIYDKT  225 (253)
Q Consensus       219 ~~~~~~~  225 (253)
                      ..+..++
T Consensus       304 ~~l~~k~  310 (312)
T 3l2o_B          304 EEVESKR  310 (312)
T ss_dssp             HHSCC--
T ss_pred             HHHHhhc
Confidence            8876543

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.95  E-value=4.2e-10  Score=98.16  Aligned_cols=114  Identities=17%  Similarity=0.199  Sum_probs=64.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhh------cCCCCC----cccCc-----------cceeeEEEEEe-------------
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFS------DDAFNT----TFIST-----------IGIDFKIKTVD-------------   52 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~------~~~~~~----~~~~~-----------~~~~~~~~~~~-------------   52 (253)
                      .....|+|+|.+||||||++++|.      +.+...    .+++.           .++++......             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            345689999999999999999997      322110    01110           01221110000             


Q ss_pred             eCCeEEEEEEEeCCCcccccc-cchh---h--hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccce-eEEeeeec
Q psy9621          53 LKGKKIKLQIWDTAGQERFHT-ITTS---Y--YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEK-MILGKTKD  125 (253)
Q Consensus        53 ~~~~~~~~~l~Dt~G~~~~~~-~~~~---~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-iiv~nK~D  125 (253)
                      .......+.+|||||...... +...   .  ...+|.+++|+|.+......   .....+..    .+|+ .+|+||.|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D  251 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLD  251 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCc
Confidence            000345799999999864321 1111   1  23789999999998754321   12222222    2675 89999999


Q ss_pred             cc
Q psy9621         126 TA  127 (253)
Q Consensus       126 ~~  127 (253)
                      ..
T Consensus       252 ~~  253 (504)
T 2j37_W          252 GH  253 (504)
T ss_dssp             SC
T ss_pred             cc
Confidence            86

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.85  E-value=4.7e-09  Score=88.54  Aligned_cols=101  Identities=15%  Similarity=0.155  Sum_probs=73.8

Q ss_pred             CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceee
Q psy9621          67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGI  146 (253)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  146 (253)
                      ..+.|......+.+.++++++|+|++++.     ..|...+.+.. .+.|+++|+||+|+..                  
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~------------------  110 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIP------------------  110 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSC------------------
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCC------------------
Confidence            45778888889999999999999999864     45666666655 4799999999999962                  


Q ss_pred             EEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         147 MLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                                                  ....  .....+....+++..|+   +++++||++|.|++++++.|.+..
T Consensus       111 ----------------------------~~~~--~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          111 ----------------------------KSVK--HDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             ----------------------------TTSC--HHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ----------------------------cccC--HHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence                                        1100  00111223444666776   799999999999999999987654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.73  E-value=2.2e-09  Score=90.56  Aligned_cols=110  Identities=15%  Similarity=0.212  Sum_probs=65.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcC------CCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc--------
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDD------AFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI--------   74 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------   74 (253)
                      ..+|+++|.+|+|||||+|++++.      .......|  +.+.....+.+...   +.++||||......+        
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence            358999999999999999999875      22212112  23333334444332   789999996432211        


Q ss_pred             chhhh--cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          75 TTSYY--RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        75 ~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ...++  +..+.++++++......+..+..    +......+.|+++++||.|..
T Consensus       237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~  287 (369)
T 3ec1_A          237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTV  287 (369)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCE
T ss_pred             HHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCccc
Confidence            11122  56788899988742211111110    111223578999999999986

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.69  E-value=1.4e-08  Score=85.67  Aligned_cols=101  Identities=14%  Similarity=0.161  Sum_probs=71.9

Q ss_pred             CcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceee
Q psy9621          67 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGI  146 (253)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  146 (253)
                      .++.|......+.+.++++++|+|++++.+     .|...+.+.. .+.|+++|+||+|+.....               
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~~---------------  115 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRSV---------------  115 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTTC---------------
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCcc---------------
Confidence            477888888888899999999999999873     3444444444 4789999999999962100               


Q ss_pred             EEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCC---ceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         147 MLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGV---RFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                                                  ...     ...+...++++..|.   +++.+||++|.|++++++.+.+..
T Consensus       116 ----------------------------~~~-----~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          116 ----------------------------KYP-----KLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             ----------------------------CHH-----HHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             ----------------------------CHH-----HHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence                                        000     111223334556665   789999999999999999987654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.69  E-value=1.3e-09  Score=91.91  Aligned_cols=112  Identities=13%  Similarity=0.154  Sum_probs=63.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCC-----CcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc----chh--
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFN-----TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI----TTS--   77 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----~~~--   77 (253)
                      ..+|+++|.+|+|||||+|++++....     ....+..+.+.....+.+...   +.++||||......+    ...  
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence            358999999999999999999875211     111222233333333443332   889999997432211    111  


Q ss_pred             --h--hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          78 --Y--YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        78 --~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                        +  ....+..+++++......+..+..    +......+.|+++++||.|..
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~  286 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTI  286 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCE
T ss_pred             HHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccc
Confidence              1  256777888887632210111100    111223578999999999986

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.66  E-value=1.5e-07  Score=80.15  Aligned_cols=64  Identities=27%  Similarity=0.500  Sum_probs=36.3

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccC--ccceeeEEEEEeeC--CeEEEEEEEeCCCcc
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFIS--TIGIDFKIKTVDLK--GKKIKLQIWDTAGQE   69 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~   69 (253)
                      ....++++|+|++|+|||||++.+.+..+......  ..+.......+.+.  +-...+.++|++|..
T Consensus        39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g  106 (427)
T 2qag_B           39 QGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG  106 (427)
T ss_dssp             -CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence            34457899999999999999999987643221110  11111111112222  223468999999864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.62  E-value=9.4e-07  Score=75.27  Aligned_cols=112  Identities=12%  Similarity=0.137  Sum_probs=57.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCcc-ceee--EEEEEeeCCeEEEEEEEeCCCcccccccchh-----hhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTI-GIDF--KIKTVDLKGKKIKLQIWDTAGQERFHTITTS-----YYR   80 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-----~~~   80 (253)
                      ...++|+|++|+|||||++.+.+-..+..-.-.. +.+.  .....+.. ....+.+||++|..........     -+.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            4589999999999999999998743222111111 1000  00111111 1124789999985421111111     223


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ..+..++ ++.....  ..-......+..   .+.|+++|.||.|+.
T Consensus       148 ~~~~~~~-lS~G~~~--kqrv~la~aL~~---~~~p~~lV~tkpdll  188 (413)
T 1tq4_A          148 EYDFFII-ISATRFK--KNDIDIAKAISM---MKKEFYFVRTKVDSD  188 (413)
T ss_dssp             GCSEEEE-EESSCCC--HHHHHHHHHHHH---TTCEEEEEECCHHHH
T ss_pred             ccCCeEE-eCCCCcc--HHHHHHHHHHHh---cCCCeEEEEecCccc
Confidence            4455554 6765211  111122222222   368999999999975

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.61  E-value=5.4e-08  Score=79.01  Aligned_cols=123  Identities=14%  Similarity=0.081  Sum_probs=76.5

Q ss_pred             EeCCCcc-cccccchhhhcCccEEEEEEeCCChhhHH--HHHHHHHHHHHhcccccceeEEeeeeccccccccccccccc
Q psy9621          63 WDTAGQE-RFHTITTSYYRGAMGIMLVYDITNEKSFD--NILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSY  139 (253)
Q Consensus        63 ~Dt~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~  139 (253)
                      -..|||. .........+..+|+++.|+|+.++.+..  .+.+++        .+.|.++++||+|+.            
T Consensus         4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~------------   63 (282)
T 1puj_A            4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKA------------   63 (282)
T ss_dssp             -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGS------------
T ss_pred             cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccC------------
Confidence            3568875 33445566789999999999999987654  233332        578999999999996            


Q ss_pred             cccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621         140 YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                                                        + ..     . .+...++.+..+++++++||+++.|++++++.+.+
T Consensus        64 ----------------------------------~-~~-----~-~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~  102 (282)
T 1puj_A           64 ----------------------------------D-AA-----V-TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKE  102 (282)
T ss_dssp             ----------------------------------C-HH-----H-HHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHH
T ss_pred             ----------------------------------C-HH-----H-HHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHH
Confidence                                              1 10     0 01112233345688999999999999999998887


Q ss_pred             HHHhccC---CCCCCCCCCeEeecCCCCCC
Q psy9621         220 AIYDKTS---GRDPLEAPDRVTIDKKPDRG  246 (253)
Q Consensus       220 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~  246 (253)
                      .+..+..   .......+.++-+-..++.+
T Consensus       103 ~l~~~~~~~~~~~~~~~~~~v~~vG~~nvG  132 (282)
T 1puj_A          103 ILQEKFDRMRAKGVKPRAIRALIIGIPNVG  132 (282)
T ss_dssp             HHHHHHHHHHHTTCCCCCEEEEEEESTTSS
T ss_pred             HHHHHHHHHHhcCCCCCCceEEEEecCCCc
Confidence            7754321   01111223455555555555

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.50  E-value=1.9e-07  Score=80.04  Aligned_cols=113  Identities=23%  Similarity=0.216  Sum_probs=62.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc------CCCC----CcccC-----------ccceeeEEEEE--e-----------eC
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD------DAFN----TTFIS-----------TIGIDFKIKTV--D-----------LK   54 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~------~~~~----~~~~~-----------~~~~~~~~~~~--~-----------~~   54 (253)
                      ...|+++|++||||||++.+|..      .+..    ..+++           ..+++......  .           ..
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~  179 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK  179 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence            56899999999999999988852      1110    01111           11222111000  0           00


Q ss_pred             CeEEEEEEEeCCCcccccc-cch-----hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          55 GKKIKLQIWDTAGQERFHT-ITT-----SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        55 ~~~~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ...+.+.++||+|...... +..     .....+|.+++|+|++........   ...+..   .-.+..+|+||.|..
T Consensus       180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~---~~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKE---ATPIGSIIVTKLDGS  252 (443)
T ss_dssp             HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHH---SCTTEEEEEECCSSC
T ss_pred             hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHh---hCCCeEEEEECCCCc
Confidence            0125789999999754321 111     123457899999998865432222   222222   223556889999986

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.49  E-value=4.6e-08  Score=78.59  Aligned_cols=57  Identities=21%  Similarity=0.314  Sum_probs=35.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER   70 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   70 (253)
                      ++++++|.+|+|||||+|++.+...... .++.|.+.....+.+.   ..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLE---NGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence            6999999999999999999997655322 2333433332223222   2589999999653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.47  E-value=1.2e-07  Score=76.91  Aligned_cols=59  Identities=25%  Similarity=0.329  Sum_probs=35.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE   69 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   69 (253)
                      ...++|+++|.||||||||+|++.+...... .+..+.+.....+.+.   ..+.+|||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVG---KELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEET---TTEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeec-CCCCCeeeeeEEEEeC---CCEEEEECcCcC
Confidence            4568999999999999999999997653322 1222333222222222   248899999974

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.43  E-value=7.1e-07  Score=71.95  Aligned_cols=114  Identities=17%  Similarity=0.185  Sum_probs=60.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcc---------cCccceeeEEEEEeeCCe--EEEEEEEeCCCcccccc----
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTF---------ISTIGIDFKIKTVDLKGK--KIKLQIWDTAGQERFHT----   73 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~----   73 (253)
                      .++++++|++|+|||||++.+.+...+...         ..+..  .......+...  ...+.++|++|......    
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~--~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~   79 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVE--IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC   79 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCS--CCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCccee--eeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence            579999999999999999999853322110         01100  01111112211  23678999998532110    


Q ss_pred             --cch----------------------hhhcCccEEEEEEeCC-ChhhHHHHHHHHHHHHHhcccccceeEEeeeecccc
Q psy9621          74 --ITT----------------------SYYRGAMGIMLVYDIT-NEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG  128 (253)
Q Consensus        74 --~~~----------------------~~~~~~d~~ilv~d~~-~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~  128 (253)
                        ...                      .....+++.++++|.. .+-+-.. ...+..+   ... .++++|.+|.|...
T Consensus        80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L---~~~-~~vI~Vi~K~D~lt  154 (270)
T 3sop_A           80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL---SKV-VNIIPVIAKADTMT  154 (270)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH---HTT-SEEEEEETTGGGSC
T ss_pred             HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH---Hhc-CcEEEEEeccccCC
Confidence              000                      0112357788888854 2222111 2222233   223 89999999999874


Q ss_pred             c
Q psy9621         129 Q  129 (253)
Q Consensus       129 ~  129 (253)
                      +
T Consensus       155 ~  155 (270)
T 3sop_A          155 L  155 (270)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.36  E-value=2.1e-07  Score=79.86  Aligned_cols=64  Identities=25%  Similarity=0.197  Sum_probs=38.7

Q ss_pred             EEEEEEEeCCCcccccc-cch-----hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccccc-c-eeEEeeeeccc
Q psy9621          57 KIKLQIWDTAGQERFHT-ITT-----SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDV-E-KMILGKTKDTA  127 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-~iiv~nK~D~~  127 (253)
                      ...+.++||||...... +..     .....+|.+++|+|.+....   .......+   . ..+ | ..+|.||.|..
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~-~~~~~i~gvVlnK~D~~  251 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---K-EAVGEIGSIIVTKLDGS  251 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---H-TTSCSCEEEEEECSSSC
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---h-hcccCCeEEEEeCCCCc
Confidence            45689999999764311 111     11236899999999875532   11122222   1 235 5 88999999975

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.34  E-value=1.3e-07  Score=80.95  Aligned_cols=113  Identities=18%  Similarity=0.202  Sum_probs=61.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc------CCCC----CcccC-----------ccceeeEEEE------------E-eeC
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD------DAFN----TTFIS-----------TIGIDFKIKT------------V-DLK   54 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~------~~~~----~~~~~-----------~~~~~~~~~~------------~-~~~   54 (253)
                      ...|+++|++||||||++..|..      .+..    ..+++           ..++......            + ...
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~  176 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV  176 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence            46789999999999999988852      1110    00010           1122111000            0 001


Q ss_pred             CeEEEEEEEeCCCccc--cc-ccc---hh--hhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecc
Q psy9621          55 GKKIKLQIWDTAGQER--FH-TIT---TS--YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDT  126 (253)
Q Consensus        55 ~~~~~~~l~Dt~G~~~--~~-~~~---~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~  126 (253)
                      .....+.++||||...  .. .+.   ..  ....++.+++|+|.........   ....+...   -.+..+|.||.|.
T Consensus       177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~  250 (433)
T 3kl4_A          177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDG  250 (433)
T ss_dssp             TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGG
T ss_pred             hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEecccc
Confidence            1245688999999754  11 111   11  1225689999999876543222   22233222   2467889999997


Q ss_pred             c
Q psy9621         127 A  127 (253)
Q Consensus       127 ~  127 (253)
                      .
T Consensus       251 ~  251 (433)
T 3kl4_A          251 T  251 (433)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.26  E-value=2.1e-06  Score=70.16  Aligned_cols=64  Identities=17%  Similarity=0.160  Sum_probs=39.0

Q ss_pred             EEEEEEEeCCCccc--ccc-cch-----hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          57 KIKLQIWDTAGQER--FHT-ITT-----SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~--~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                      .+.+.++||||...  ... +..     .....+|.+++|+|.+....   .......+..    ..| ..+|.||.|..
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT  252 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence            35689999999876  211 211     13457899999999864322   1122222222    356 67889999975

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.10  E-value=3.9e-06  Score=74.51  Aligned_cols=65  Identities=14%  Similarity=0.059  Sum_probs=39.8

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEE--ee-CCeEEEEEEEeCCCccc
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTV--DL-KGKKIKLQIWDTAGQER   70 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~Dt~G~~~   70 (253)
                      ....++|+|+|.+|||||||+|+|++.... .....+.+.+.....+  .+ ......+.++||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            345789999999999999999999986532 1111111111111111  11 12335689999999754

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.03  E-value=1.4e-05  Score=66.08  Aligned_cols=24  Identities=21%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..--++++|++||||||++..+.+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998863

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.95  E-value=4.1e-06  Score=67.14  Aligned_cols=55  Identities=16%  Similarity=0.065  Sum_probs=35.9

Q ss_pred             CCCcccc-cccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          65 TAGQERF-HTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        65 t~G~~~~-~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .|||... .......+..+|++|.|+|+.++.+.....  +. +   .  +.|.++++||+|+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~   59 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIA   59 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGS
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCC
Confidence            4666432 334566788999999999999887654211  11 1   1  68999999999996

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.94  E-value=7.6e-08  Score=83.80  Aligned_cols=118  Identities=11%  Similarity=0.095  Sum_probs=66.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc--cccc--------h
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF--HTIT--------T   76 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~--------~   76 (253)
                      ...++|+++|.+|+||||+.++|...... ...++.+++.........+......+||..|.+.+  ...+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34678999999999999999998753211 11122211110000111112233467898887322  2222        4


Q ss_pred             hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccc--------ccceeEEeeeecc
Q psy9621          77 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE--------DVEKMILGKTKDT  126 (253)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~--------~~p~iiv~nK~D~  126 (253)
                      .++....+.++|+|.++. +.+....|+..+......        +.|.++..|+.|.
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~  172 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQV  172 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHh
Confidence            456667888999999987 466666676665543211        3344555666654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.88  E-value=2.5e-05  Score=70.09  Aligned_cols=23  Identities=39%  Similarity=0.522  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDA   33 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~   33 (253)
                      .|+|+|++|||||||++.+.+-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            49999999999999999998754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.84  E-value=1.8e-05  Score=64.70  Aligned_cols=53  Identities=11%  Similarity=0.130  Sum_probs=37.8

Q ss_pred             cccchhhhcCccEEEEEEeCCChhh-HHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          72 HTITTSYYRGAMGIMLVYDITNEKS-FDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ..+.+..+.++|.+++|+|+.+|.. ...+.+++....   ..++|.+||+||+|+.
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~  130 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLI  130 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGC
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccC
Confidence            3344557889999999999987754 333444443332   2578999999999997

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.49  E-value=0.00046  Score=57.52  Aligned_cols=46  Identities=22%  Similarity=0.200  Sum_probs=31.0

Q ss_pred             hhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          78 YYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ...++|.+++|... +|. +...+.+++.....   .++|.+||+||+|+.
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~  173 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLL  173 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGC
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCC
Confidence            35788999988765 454 33344454443332   468889999999997

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.47  E-value=0.00055  Score=58.72  Aligned_cols=64  Identities=13%  Similarity=0.125  Sum_probs=38.4

Q ss_pred             EEEEEEEeCCCcccccc-cch-----hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          57 KIKLQIWDTAGQERFHT-ITT-----SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                      .+.+.++||||...... +..     .....++.+++|+|........   .....+.    ..++ .-+|.||.|..
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~----~~l~i~gvVlnK~D~~  253 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFN----EALPLTGVVLTKVDGD  253 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHH----HHSCCCCEEEECTTSS
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHh----ccCCCeEEEEecCCCC
Confidence            45689999999755422 211     1244788999999987543221   2222222    2345 35788999975

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.39  E-value=0.00093  Score=54.57  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~   30 (253)
                      --|+++|++|+||||++..+.
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA  125 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLA  125 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHH
Confidence            468899999999999998875

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.37  E-value=0.00066  Score=57.95  Aligned_cols=64  Identities=23%  Similarity=0.254  Sum_probs=36.3

Q ss_pred             EEEEEEEeCCCcccccc-cch-----hhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          57 KIKLQIWDTAGQERFHT-ITT-----SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                      .+.+.++||||...... +..     .....++.+++|+|......   .......+..    .++ .-+|.||.|..
T Consensus       180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~~a~~f~~----~l~i~GVIlTKlD~~  250 (425)
T 2ffh_A          180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALSVARAFDE----KVGVTGLVLTKLDGD  250 (425)
T ss_dssp             TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHH----HTCCCEEEEESGGGC
T ss_pred             CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHHHHHHHHh----cCCceEEEEeCcCCc
Confidence            35689999999754321 111     11235888899999864322   2222222222    233 56788999964

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.30  E-value=0.00042  Score=59.48  Aligned_cols=25  Identities=12%  Similarity=0.085  Sum_probs=21.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+..-|.|+|.+++|||||+|+|++
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhh
Confidence            4566789999999999999999985

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.30  E-value=0.00012  Score=55.09  Aligned_cols=22  Identities=32%  Similarity=0.755  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+++++|++|+|||||++.+.+
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g   22 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999998875

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.23  E-value=0.0014  Score=53.33  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHhh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~   30 (253)
                      -.++++|++|+||||++..+.
T Consensus        99 ~~i~i~g~~G~GKTT~~~~la  119 (295)
T 1ls1_A           99 NLWFLVGLQGSGKTTTAAKLA  119 (295)
T ss_dssp             EEEEEECCTTTTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            367888999999999998874

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.21  E-value=0.00021  Score=53.88  Aligned_cols=24  Identities=29%  Similarity=0.322  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      --.|+++|++|||||||++.+.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            346999999999999999998764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.14  E-value=0.0002  Score=53.71  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++|+|++|||||||++.+...
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998763

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.13  E-value=0.00043  Score=53.29  Aligned_cols=66  Identities=12%  Similarity=0.067  Sum_probs=48.0

Q ss_pred             EEEEEEEeCCCc-ccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          57 KIKLQIWDTAGQ-ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        57 ~~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .+.+.++|+|+. ..  ......+..+|.+|++...+ ..++..+...++.+....  +.++.++.|+.|..
T Consensus        67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~  133 (209)
T 3cwq_A           67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPY  133 (209)
T ss_dssp             GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCT
T ss_pred             cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCc
Confidence            456889999986 32  23445678899999998854 666777777777766533  56788999999864

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.10  E-value=0.00019  Score=58.71  Aligned_cols=23  Identities=35%  Similarity=0.536  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -.++|+|++|||||||+|.+.+.
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CEEEEECCCCCCHHHHHHHhccc
Confidence            37899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.08  E-value=0.00025  Score=54.17  Aligned_cols=21  Identities=33%  Similarity=0.574  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++|+|++|+|||||++.+.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999999875

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.00  E-value=0.00048  Score=51.17  Aligned_cols=30  Identities=30%  Similarity=0.418  Sum_probs=21.9

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      |.+.... --.|+++|++||||||+.+.+..
T Consensus         1 m~~~~~~-g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            1 MSTTNHD-HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             --CCCTT-SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCccCCC-CcEEEEEcCCCCCHHHHHHHHHH
Confidence            4444333 34699999999999999998864

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.97  E-value=0.00036  Score=51.94  Aligned_cols=20  Identities=35%  Similarity=0.511  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhh
Q psy9621          11 KLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~   30 (253)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999755

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.94  E-value=0.00039  Score=53.00  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++++|++|||||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999998763

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.92  E-value=0.00043  Score=52.78  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .--|+|+|++|||||||+++|...
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhh
Confidence            346899999999999999999853

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.90  E-value=0.00044  Score=53.70  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++|+|++|||||||++.+.+.
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999998764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.89  E-value=0.00045  Score=53.01  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++|+|++|||||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999998763

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.87  E-value=0.00053  Score=51.80  Aligned_cols=21  Identities=29%  Similarity=0.602  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~   32 (253)
                      |+|+||+|||||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.84  E-value=0.00051  Score=53.25  Aligned_cols=22  Identities=32%  Similarity=0.637  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++|+|++|+|||||++.+.+-
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998863

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.83  E-value=0.00055  Score=52.62  Aligned_cols=22  Identities=41%  Similarity=0.459  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -|+|+|++|||||||++.|...
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999864

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.79  E-value=0.00073  Score=51.86  Aligned_cols=25  Identities=20%  Similarity=0.157  Sum_probs=21.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .....|+|+|++|+|||||++.+.+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998875

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.75  E-value=0.0007  Score=49.73  Aligned_cols=23  Identities=30%  Similarity=0.368  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDA   33 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~   33 (253)
                      -++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999999999987644

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.75  E-value=0.00072  Score=53.10  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++++|+.|||||||++.+.+
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            479999999999999998875

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.72  E-value=0.00083  Score=49.54  Aligned_cols=20  Identities=25%  Similarity=0.290  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRF   29 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l   29 (253)
                      +.|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.71  E-value=0.00081  Score=51.42  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .-|+|+|++|||||||.++|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998753

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.70  E-value=0.00084  Score=49.66  Aligned_cols=22  Identities=23%  Similarity=0.493  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..|+++|++|||||||.+.+..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998875

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.68  E-value=0.00085  Score=52.27  Aligned_cols=21  Identities=33%  Similarity=0.556  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++++|+.|+|||||++.+.+
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999998875

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.68  E-value=0.00093  Score=49.26  Aligned_cols=21  Identities=24%  Similarity=0.248  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.67  E-value=0.0009  Score=51.50  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998853

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.66  E-value=0.00098  Score=52.55  Aligned_cols=21  Identities=29%  Similarity=0.589  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~   30 (253)
                      ..|+|+|++|||||||++.+.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999987

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.66  E-value=0.00093  Score=51.45  Aligned_cols=22  Identities=32%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998854

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.65  E-value=0.00091  Score=55.77  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAF   34 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~   34 (253)
                      .++|+|++|||||||++.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            589999999999999999987543

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.65  E-value=0.00091  Score=50.34  Aligned_cols=21  Identities=29%  Similarity=0.531  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++|++|+|||||++.+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999874

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.65  E-value=0.00087  Score=51.06  Aligned_cols=23  Identities=43%  Similarity=0.598  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      ..|+|+|++|||||||++.+...
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999998764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.65  E-value=0.00084  Score=50.85  Aligned_cols=21  Identities=38%  Similarity=0.725  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +++++|++|+|||||++.+.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            589999999999999998875

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.64  E-value=0.00097  Score=52.53  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999988763

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.64  E-value=0.001  Score=51.08  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ++|+|+|+|||||+|...+|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998874

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.61  E-value=0.0012  Score=48.96  Aligned_cols=22  Identities=32%  Similarity=0.344  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..|+|.|++||||||+.+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999875

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.61  E-value=0.0012  Score=50.66  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ....|+++|++|||||||++.+.+
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998875

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.61  E-value=0.0011  Score=51.30  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988763

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.60  E-value=0.0029  Score=45.37  Aligned_cols=24  Identities=21%  Similarity=0.275  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      ...|++.|++|+|||++.+.+...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            347999999999999999888753

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.60  E-value=0.0011  Score=53.02  Aligned_cols=22  Identities=32%  Similarity=0.359  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++++|+.|+|||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988763

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.59  E-value=0.001  Score=50.68  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.|+|+|++|||||||++.+..
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.59  E-value=0.0011  Score=53.34  Aligned_cols=21  Identities=29%  Similarity=0.624  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++++|+.|||||||++.+.+
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999998875

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.56  E-value=0.00099  Score=49.75  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.++++|++|+|||||++.+.+
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.56  E-value=0.0011  Score=52.70  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999988763

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.56  E-value=0.0013  Score=51.76  Aligned_cols=22  Identities=23%  Similarity=0.495  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999988753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.55  E-value=0.0012  Score=52.87  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999988763

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.55  E-value=0.0013  Score=51.85  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999988753

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.55  E-value=0.0011  Score=52.89  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++|+|++|+|||||++.+.+
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            689999999999999998875

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.53  E-value=0.0013  Score=49.94  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.|+++|++||||||+...+..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999998874

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.52  E-value=0.0013  Score=49.86  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998874

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.52  E-value=0.0014  Score=51.18  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999988763

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.52  E-value=0.0014  Score=51.88  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999988763

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.51  E-value=0.00099  Score=51.26  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988764

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.51  E-value=0.0015  Score=49.02  Aligned_cols=21  Identities=33%  Similarity=0.512  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .|+|.|.+||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998875

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.51  E-value=0.0013  Score=50.12  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+|+|+|++||||||+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999998876

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.51  E-value=0.0013  Score=52.51  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            5789999999999999988753

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.51  E-value=0.0013  Score=52.03  Aligned_cols=22  Identities=36%  Similarity=0.597  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999988763

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.50  E-value=0.0013  Score=51.76  Aligned_cols=22  Identities=36%  Similarity=0.469  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999988763

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.49  E-value=0.0014  Score=48.71  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .|+|.|++||||||+.+.|..
T Consensus         5 ~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.49  E-value=0.0014  Score=52.16  Aligned_cols=22  Identities=41%  Similarity=0.401  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988763

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.48  E-value=0.0014  Score=50.45  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.47  E-value=0.0014  Score=53.47  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++|+|++|+|||||++.+.+
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhh
Confidence            689999999999999998875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.46  E-value=0.0016  Score=51.94  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999988763

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.45  E-value=0.0015  Score=51.78  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988863

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.45  E-value=0.0018  Score=48.43  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...|+|.|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.45  E-value=0.0016  Score=48.59  Aligned_cols=22  Identities=32%  Similarity=0.285  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-++|+|++|+|||||++++..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            3589999999999999999985

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.43  E-value=0.0019  Score=49.27  Aligned_cols=22  Identities=36%  Similarity=0.545  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +.|+++|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998875

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.43  E-value=0.0015  Score=49.69  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..|+|.|.+|||||||.+.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.43  E-value=0.0017  Score=52.31  Aligned_cols=22  Identities=36%  Similarity=0.466  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5799999999999999988753

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.42  E-value=0.0015  Score=52.34  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++|+|+.|+|||||++.+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999988763

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.42  E-value=0.0016  Score=52.12  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999988863

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.42  E-value=0.0017  Score=48.68  Aligned_cols=22  Identities=27%  Similarity=0.240  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.42  E-value=0.0017  Score=48.51  Aligned_cols=22  Identities=36%  Similarity=0.471  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+|+++|++||||||+...+..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.41  E-value=0.0016  Score=51.68  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988763

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.41  E-value=0.0019  Score=52.63  Aligned_cols=23  Identities=30%  Similarity=0.362  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDA   33 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~   33 (253)
                      .++++|++|+|||||++.+.+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            57899999999999999998643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.40  E-value=0.0016  Score=53.15  Aligned_cols=20  Identities=45%  Similarity=0.740  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhh
Q psy9621          11 KLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~   30 (253)
                      .++++|++|||||||++.+.
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57999999999999999998

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.39  E-value=0.0018  Score=50.16  Aligned_cols=22  Identities=23%  Similarity=0.302  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+|+++|++||||||+.+.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.37  E-value=0.0011  Score=51.72  Aligned_cols=22  Identities=36%  Similarity=0.445  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhh-cC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFS-DD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~-~~   32 (253)
                      -++|+|++|||||||++.+. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999988 53

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.37  E-value=0.0017  Score=51.89  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999988753

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.35  E-value=0.0021  Score=48.27  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..|+|.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.34  E-value=0.002  Score=47.96  Aligned_cols=23  Identities=39%  Similarity=0.553  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...|++.|++|+||||+.+.+..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            34699999999999999998864

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.34  E-value=0.0017  Score=50.26  Aligned_cols=21  Identities=24%  Similarity=0.305  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++|+|++|+|||||++.+..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.33  E-value=0.0021  Score=49.65  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++|+|+|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.33  E-value=0.0019  Score=49.19  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      --.|+|+|++|+|||||.+.+..
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999988865

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.33  E-value=0.0024  Score=48.50  Aligned_cols=25  Identities=24%  Similarity=0.526  Sum_probs=21.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...+.|+|.|.+||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4456899999999999999998864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.32  E-value=0.0022  Score=51.24  Aligned_cols=23  Identities=35%  Similarity=0.547  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDA   33 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~   33 (253)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999887643

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.31  E-value=0.0011  Score=49.40  Aligned_cols=21  Identities=33%  Similarity=0.509  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++|+|++|+|||||++.+.+
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998875

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.30  E-value=0.0022  Score=47.05  Aligned_cols=22  Identities=32%  Similarity=0.327  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998865

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.27  E-value=0.0019  Score=52.86  Aligned_cols=26  Identities=19%  Similarity=0.206  Sum_probs=22.0

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .....-|+|+|++|||||||++.+.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHh
Confidence            34556899999999999999998875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.27  E-value=0.0022  Score=49.70  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +.|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998864

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.27  E-value=0.0027  Score=47.65  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..+|+++|++||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998875

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.26  E-value=0.0021  Score=47.72  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +|+|+|++||||||+.+.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.25  E-value=0.0027  Score=50.00  Aligned_cols=24  Identities=17%  Similarity=0.267  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..++|+|.|++||||||+.++|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.25  E-value=0.0023  Score=49.68  Aligned_cols=22  Identities=27%  Similarity=0.558  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..|+|.|++||||||+.+.|..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.25  E-value=0.002  Score=53.96  Aligned_cols=23  Identities=13%  Similarity=0.369  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-+++|+|++|+|||||++.+.+
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~g  192 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAA  192 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998875

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.23  E-value=0.0027  Score=48.39  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999874

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.23  E-value=0.0017  Score=52.94  Aligned_cols=21  Identities=38%  Similarity=0.575  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++|+|++|+|||||++.+.+
T Consensus        82 ~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTT
T ss_pred             EEEEECCCCchHHHHHHHHHc
Confidence            689999999999999988775

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.21  E-value=0.003  Score=51.04  Aligned_cols=25  Identities=28%  Similarity=0.315  Sum_probs=21.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ....-|+|.|++|||||||..++..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999874

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.21  E-value=0.0017  Score=47.05  Aligned_cols=21  Identities=24%  Similarity=0.487  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++++|++|+|||+|++.+.+
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998875

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.21  E-value=0.0028  Score=47.16  Aligned_cols=22  Identities=36%  Similarity=0.632  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.+++.|++|+|||+|++.+..
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998865

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.21  E-value=0.0036  Score=47.82  Aligned_cols=23  Identities=13%  Similarity=-0.006  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.19  E-value=0.003  Score=47.42  Aligned_cols=22  Identities=23%  Similarity=0.498  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..|+|.|.+||||||+.+.|..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.19  E-value=0.0039  Score=48.24  Aligned_cols=20  Identities=20%  Similarity=0.468  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      |+|+|+|||||+|...+|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999988864

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.19  E-value=0.0023  Score=51.43  Aligned_cols=20  Identities=35%  Similarity=0.547  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      ++++|++|+|||||++.+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            99999999999999999876

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.19  E-value=0.0032  Score=47.65  Aligned_cols=27  Identities=19%  Similarity=0.170  Sum_probs=22.5

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      ......|+|.|.+||||||+.+.|...
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            344578999999999999999988763

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.18  E-value=0.0027  Score=51.46  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5899999999999999988753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.16  E-value=0.0025  Score=53.12  Aligned_cols=22  Identities=41%  Similarity=0.557  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++++|++|+|||||++.+.+-
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            4789999999999999988763

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.16  E-value=0.0041  Score=47.23  Aligned_cols=24  Identities=17%  Similarity=0.326  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-..|+|.|.+||||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998874

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.15  E-value=0.0024  Score=53.32  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++|+|++|+|||||++.+.+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            799999999999999998865

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.15  E-value=0.0023  Score=49.47  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.13  E-value=0.0037  Score=47.69  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      ...|+++|++|+|||||.+.+...
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999988763

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.12  E-value=0.0029  Score=48.77  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ++|+|+|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998864

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.12  E-value=0.0027  Score=50.18  Aligned_cols=21  Identities=38%  Similarity=0.591  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++++|++|+|||||++.+.+
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999875

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.11  E-value=0.0043  Score=46.43  Aligned_cols=22  Identities=18%  Similarity=0.293  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..|+|.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.11  E-value=0.0034  Score=46.51  Aligned_cols=22  Identities=18%  Similarity=0.256  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..+.++|++|+|||||+.++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999875

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.10  E-value=0.0045  Score=46.34  Aligned_cols=24  Identities=33%  Similarity=0.400  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ....|+|.|.+|+||||+.+.+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.09  E-value=0.0032  Score=47.77  Aligned_cols=24  Identities=17%  Similarity=0.135  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      ...|+|.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999988763

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.08  E-value=0.0029  Score=52.65  Aligned_cols=22  Identities=36%  Similarity=0.428  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++++|++|+|||||++.+.+-
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988753

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.08  E-value=0.0028  Score=51.73  Aligned_cols=21  Identities=33%  Similarity=0.600  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHhh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~   30 (253)
                      -.|+++|++|||||||++.+.
T Consensus       103 ~vi~lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHH
Confidence            478999999999999999886

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.07  E-value=0.0031  Score=52.70  Aligned_cols=21  Identities=29%  Similarity=0.343  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++|++|+|||||++.+.+
T Consensus        56 i~~IiGpnGaGKSTLlr~i~G   76 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNL   76 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEcCCCchHHHHHHHHhc
Confidence            478999999999999988875

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.07  E-value=0.0037  Score=49.20  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ....|+++|+.|||||||++.+.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998865

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.06  E-value=0.0031  Score=52.10  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++|+|++|+|||||++.+.+-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.05  E-value=0.0034  Score=47.25  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.05  E-value=0.0034  Score=47.11  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.05  E-value=0.0031  Score=52.60  Aligned_cols=21  Identities=38%  Similarity=0.605  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++|++|+|||||++.+.+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaG   51 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAG   51 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEcCCCchHHHHHHHHHC
Confidence            478999999999999998875

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.04  E-value=0.0028  Score=53.06  Aligned_cols=22  Identities=23%  Similarity=0.561  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++|+|++|+|||||++.+.+-
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999998863

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.03  E-value=0.0033  Score=52.55  Aligned_cols=22  Identities=32%  Similarity=0.587  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++++|++|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            4789999999999999988753

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.03  E-value=0.0031  Score=51.42  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      --++++|++||||||++..+.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999998863

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.02  E-value=0.0032  Score=52.90  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++|+|++|+|||||++.+.+
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999999875

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.01  E-value=0.0034  Score=52.75  Aligned_cols=21  Identities=29%  Similarity=0.540  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++|++|+|||||++.+.+
T Consensus        31 ~~~llGpsGsGKSTLLr~iaG   51 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAG   51 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEcCCCchHHHHHHHHHc
Confidence            478999999999999998875

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.99  E-value=0.0037  Score=47.15  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..|+|.|.+||||||+.+.|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988864

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.97  E-value=0.0036  Score=52.50  Aligned_cols=21  Identities=43%  Similarity=0.589  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++|++|+|||||++.+.+
T Consensus        39 ~~~llGpnGsGKSTLLr~iaG   59 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAG   59 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            478999999999999998875

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.97  E-value=0.0035  Score=52.58  Aligned_cols=22  Identities=36%  Similarity=0.499  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++++|++|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCcHHHHHHHHHHcC
Confidence            4789999999999999988753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.97  E-value=0.0038  Score=48.66  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..+|+|+|.+||||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.95  E-value=0.0017  Score=49.79  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999998864

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.95  E-value=0.0037  Score=49.54  Aligned_cols=21  Identities=24%  Similarity=0.343  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -|+|+|++|||||||...|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.94  E-value=0.003  Score=46.84  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-.++|.|++|+|||+|++.+..
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999998865

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.93  E-value=0.004  Score=46.37  Aligned_cols=21  Identities=19%  Similarity=0.167  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.+|+|+.|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999853

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.93  E-value=0.0042  Score=49.15  Aligned_cols=21  Identities=24%  Similarity=0.264  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~   30 (253)
                      ..|+|+|++|||||||++.+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999887

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.92  E-value=0.0035  Score=49.61  Aligned_cols=26  Identities=31%  Similarity=0.281  Sum_probs=21.9

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ......|+++|++||||||+.+.+..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34456899999999999999998864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.92  E-value=0.0049  Score=46.87  Aligned_cols=25  Identities=28%  Similarity=0.134  Sum_probs=21.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ....-|+|+|++|+|||||++.+..
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998864

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=95.92  E-value=0.0047  Score=51.63  Aligned_cols=50  Identities=14%  Similarity=0.205  Sum_probs=37.0

Q ss_pred             eeeccccccccccccccccccceeeEEEEeccC----------ccchhhHHHHHHhhhhh
Q psy9621         122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITN----------EKSFDNILKWLRNIDEH  171 (253)
Q Consensus       122 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~  171 (253)
                      .-.|.+|+++.+.....++....+++.+++.+.          ...+.+...|...+...
T Consensus       204 ~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~  263 (362)
T 1zcb_A          204 KMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN  263 (362)
T ss_dssp             EEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred             EEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc
Confidence            346999998888888888899999999999998          67899999999888765

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.90  E-value=0.0038  Score=50.08  Aligned_cols=21  Identities=38%  Similarity=0.591  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++++|++|+|||||++.+.+
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHH
Confidence            389999999999999999875

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.89  E-value=0.0029  Score=52.55  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++++|++|+|||||++.+.+-
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCccHHHHHHHHHcC
Confidence            4789999999999999988753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.88  E-value=0.0037  Score=53.32  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++|+|++|+|||||++.+.+
T Consensus       169 ii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999875

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.88  E-value=0.0044  Score=45.64  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.88  E-value=0.0037  Score=51.61  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++++|++|+|||||++.+.+
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999999875

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.87  E-value=0.0049  Score=48.97  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..|+|.|.+||||||+.+.+..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.87  E-value=0.0055  Score=49.58  Aligned_cols=25  Identities=16%  Similarity=0.335  Sum_probs=21.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .....|+|+|++|||||||++.+..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999988764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.87  E-value=0.0057  Score=50.19  Aligned_cols=25  Identities=16%  Similarity=0.228  Sum_probs=21.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...+-|+|+|++|||||||++.+..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999988754

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=95.87  E-value=0.0052  Score=50.17  Aligned_cols=25  Identities=16%  Similarity=0.274  Sum_probs=21.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ....-|+|+|++|||||||++.+.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999998875

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.87  E-value=0.0043  Score=47.92  Aligned_cols=21  Identities=33%  Similarity=0.551  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999874

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.86  E-value=0.005  Score=45.22  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -+|+|.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.85  E-value=0.0045  Score=47.31  Aligned_cols=23  Identities=17%  Similarity=0.159  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998874

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=95.83  E-value=0.02  Score=49.02  Aligned_cols=65  Identities=20%  Similarity=0.225  Sum_probs=40.9

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhc------------------CCCCC---cccCccceeeEEE--EEee-CCeEEEEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSD------------------DAFNT---TFISTIGIDFKIK--TVDL-KGKKIKLQ   61 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~------------------~~~~~---~~~~~~~~~~~~~--~~~~-~~~~~~~~   61 (253)
                      .++..=|.|+|+.++|||+|+|.++.                  ..|..   ...-|.|+-+-..  .+.. ++..+.+.
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl  143 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred             CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence            45667778999999999999995541                  12221   1123455443221  1222 56678899


Q ss_pred             EEeCCCccc
Q psy9621          62 IWDTAGQER   70 (253)
Q Consensus        62 l~Dt~G~~~   70 (253)
                      ++||.|...
T Consensus       144 llDTEG~~d  152 (457)
T 4ido_A          144 LMDTQGTFD  152 (457)
T ss_dssp             EEEECCBTC
T ss_pred             EEeccCCCC
Confidence            999999643

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.82  E-value=0.0049  Score=47.79  Aligned_cols=23  Identities=17%  Similarity=0.270  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-.+++.|++|+|||+|++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.82  E-value=0.004  Score=54.51  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++|+|++|||||||++.+.+-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5999999999999999998863

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.81  E-value=0.0062  Score=46.83  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.80  E-value=0.0066  Score=47.26  Aligned_cols=26  Identities=35%  Similarity=0.486  Sum_probs=22.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      ..-.-|+|.|+.|||||||++.+.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            44567999999999999999988763

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.78  E-value=0.0049  Score=45.97  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .|+|.|.+||||||+...|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999988864

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.77  E-value=0.0051  Score=48.62  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.+++.|++|+|||+|++.+.+
T Consensus        46 ~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            3699999999999999999875

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.77  E-value=0.0038  Score=46.47  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=15.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..|+|.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998863

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=95.76  E-value=0.0058  Score=45.43  Aligned_cols=23  Identities=35%  Similarity=0.434  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -..|++.|.+||||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999988865

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.76  E-value=0.0048  Score=52.08  Aligned_cols=21  Identities=33%  Similarity=0.605  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++++|++|+|||||++.+.+
T Consensus        49 ~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            589999999999999998875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.76  E-value=0.0053  Score=46.53  Aligned_cols=22  Identities=41%  Similarity=0.526  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.+++.|++|+|||+|+..+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998875

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.72  E-value=0.0049  Score=51.44  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      --++++|++||||||++..+.+
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHh
Confidence            4689999999999999998863

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.71  E-value=0.0065  Score=47.98  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=21.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...+.|+|.|.+||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998865

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.71  E-value=0.006  Score=44.14  Aligned_cols=19  Identities=37%  Similarity=0.576  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHhh
Q psy9621          12 LLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~   30 (253)
                      .+|+|+.|+|||||+.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4789999999999999975

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.69  E-value=0.003  Score=52.66  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++++|++|+|||||++.+.+-
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988753

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.68  E-value=0.0051  Score=48.66  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -+|+++|++|+||||+.+.+..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988864

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.63  E-value=0.0046  Score=47.23  Aligned_cols=21  Identities=24%  Similarity=0.395  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+++.|+||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999988764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.63  E-value=0.0059  Score=50.74  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      +++++|++|+|||||++.+.+.
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999988864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.59  E-value=0.0057  Score=53.05  Aligned_cols=21  Identities=38%  Similarity=0.759  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~   30 (253)
                      --++|+|++|||||||+..|.
T Consensus       294 eVI~LVGpNGSGKTTLl~~LA  314 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLA  314 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHH
Confidence            468999999999999999875

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.59  E-value=0.0069  Score=47.33  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+.|++.|++|+||||+.+.+..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998863

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.57  E-value=0.0058  Score=49.42  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++|+|++|+|||||+..+..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            478999999999999998875

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.56  E-value=0.0067  Score=47.29  Aligned_cols=24  Identities=25%  Similarity=0.284  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-.-|+|.|++||||||+++++..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999999875

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.54  E-value=0.0069  Score=46.39  Aligned_cols=21  Identities=19%  Similarity=0.156  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999886

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.53  E-value=0.0068  Score=46.42  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...|+|.|.+|+||||+.+.+..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998764

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.53  E-value=0.007  Score=47.13  Aligned_cols=21  Identities=19%  Similarity=0.232  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++|+|++|+|||||+..+..
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            478999999999999999886

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.53  E-value=0.0068  Score=43.51  Aligned_cols=25  Identities=16%  Similarity=0.122  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      ....|++.|++|+|||++.+.+...
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHh
Confidence            3457999999999999999988753

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.53  E-value=0.0052  Score=50.44  Aligned_cols=23  Identities=35%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      --++|+|..|||||||++.+.+.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            35789999999999999999864

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.46  E-value=0.006  Score=52.69  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++|+|+.|+|||||++.+.+
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~G  160 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCS  160 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999998875

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.46  E-value=0.11  Score=39.08  Aligned_cols=67  Identities=16%  Similarity=0.036  Sum_probs=47.6

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhc--ccccceeEEeeeeccc
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA--NEDVEKMILGKTKDTA  127 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~  127 (253)
                      .+.+.++|+|+..  .......+..+|.+|++...+.. + ..+...++.+....  ..+.++.+|.|+.|..
T Consensus        75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~  143 (206)
T 4dzz_A           75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM  143 (206)
T ss_dssp             TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred             CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence            3568999999865  33445667789999999986544 4 66666666665543  3457789999999853

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.45  E-value=0.0071  Score=46.64  Aligned_cols=21  Identities=33%  Similarity=0.520  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.42  E-value=0.0081  Score=45.72  Aligned_cols=21  Identities=33%  Similarity=0.580  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+++.|++|+|||+|++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999998875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.37  E-value=0.011  Score=44.67  Aligned_cols=25  Identities=20%  Similarity=0.275  Sum_probs=22.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...+.|.+.|.+||||||+.+.|..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998875

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.36  E-value=0.0086  Score=47.96  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-.+++.|++|+|||+|++.+..
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            44699999999999999999875

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.36  E-value=0.0082  Score=48.57  Aligned_cols=22  Identities=32%  Similarity=0.344  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..|+|.|.+||||||+.+++..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.33  E-value=0.0095  Score=46.97  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...+++.|++|+|||+|++.+..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999875

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.29  E-value=0.014  Score=46.85  Aligned_cols=23  Identities=43%  Similarity=0.488  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhh
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~   30 (253)
                      ..+.|+|.|.+||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999999887

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.29  E-value=0.0094  Score=48.10  Aligned_cols=23  Identities=35%  Similarity=0.391  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-.+++.|++|+|||+|++.+..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.28  E-value=0.0089  Score=51.29  Aligned_cols=22  Identities=32%  Similarity=0.436  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      +++++|++|+|||||++.+.+.
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            7899999999999999988764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.24  E-value=0.013  Score=47.44  Aligned_cols=22  Identities=23%  Similarity=0.166  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-+++.|+||+|||+|.+.+..
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4677889999999999998875

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.23  E-value=0.0088  Score=50.24  Aligned_cols=22  Identities=23%  Similarity=0.202  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3789999999999999998875

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.23  E-value=0.012  Score=47.68  Aligned_cols=25  Identities=24%  Similarity=0.493  Sum_probs=20.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .....+++.|++|+|||+|.+.+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3445799999999999999986653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.16  E-value=0.01  Score=49.62  Aligned_cols=19  Identities=26%  Similarity=0.475  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHhh
Q psy9621          12 LLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~   30 (253)
                      .+|+|+.|+|||||++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4589999999999999976

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.14  E-value=0.011  Score=52.74  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            6899999999999999988753

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.14  E-value=0.01  Score=48.21  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.|++.|++|+|||+|++.+..
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHH
Confidence            4699999999999999999875

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.14  E-value=0.0098  Score=51.55  Aligned_cols=20  Identities=30%  Similarity=0.476  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhh
Q psy9621          11 KLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~   30 (253)
                      -++|+|+.|+|||||++.+.
T Consensus        31 ~~~liG~nGsGKSTLl~~l~   50 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFV   50 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHh
Confidence            57899999999999999885

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.13  E-value=0.015  Score=47.16  Aligned_cols=23  Identities=30%  Similarity=0.509  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-.+++.|++|+|||++.+.+..
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHH
Confidence            45799999999999999998875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.13  E-value=0.015  Score=51.36  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999988763

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.12  E-value=0.0099  Score=48.69  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.+++.|++|+|||+|++.+..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999998875

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.11  E-value=0.012  Score=44.59  Aligned_cols=23  Identities=35%  Similarity=0.631  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      ..|+|+|++|+|||+|...|...
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999864

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.10  E-value=0.012  Score=45.71  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=20.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...+++.|+|+|||||||+..+|..
T Consensus         6 ~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccceeeECCCCCCHHHHHHHHHH
Confidence            3468999999999999999998864

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.08  E-value=0.011  Score=47.32  Aligned_cols=21  Identities=19%  Similarity=0.381  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998874

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.06  E-value=0.012  Score=45.88  Aligned_cols=21  Identities=38%  Similarity=0.442  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999877753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.05  E-value=0.014  Score=51.36  Aligned_cols=22  Identities=41%  Similarity=0.599  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++++|+.|+|||||++.+.+-
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999988764

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.02  E-value=0.017  Score=47.60  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -|+|+|++|||||||...|..
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.00  E-value=0.018  Score=45.89  Aligned_cols=25  Identities=28%  Similarity=0.401  Sum_probs=21.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .....+++.|++|+|||+|...+..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH
Confidence            3456899999999999999999875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.00  E-value=0.012  Score=52.34  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999988763

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.97  E-value=0.011  Score=49.11  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-.++|.|++|+|||||++.+..
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999999875

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.94  E-value=0.013  Score=47.35  Aligned_cols=23  Identities=39%  Similarity=0.616  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-.+++.|++|+|||+|++.+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999998875

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.92  E-value=0.016  Score=51.75  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5899999999999999988753

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=94.91  E-value=0.014  Score=47.32  Aligned_cols=21  Identities=33%  Similarity=0.616  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~   30 (253)
                      -.++|+|++|+||||++..+.
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            478999999999999998875

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.89  E-value=0.019  Score=47.65  Aligned_cols=24  Identities=21%  Similarity=0.535  Sum_probs=20.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhh
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~   30 (253)
                      ....+|+++|++|+||||+...+.
T Consensus        22 g~~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           22 NYRVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHH
Confidence            345689999999999999997664

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=94.88  E-value=0.014  Score=48.76  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++|.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998753

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.84  E-value=0.012  Score=52.54  Aligned_cols=21  Identities=33%  Similarity=0.566  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++++|++|+|||||++.+.+
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g  403 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMR  403 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            789999999999999988875

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.82  E-value=0.012  Score=48.69  Aligned_cols=21  Identities=33%  Similarity=0.553  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ++++.|++|+|||||++.+.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999998865

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=94.82  E-value=0.017  Score=44.97  Aligned_cols=24  Identities=17%  Similarity=0.207  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ....|+|+|.+|+||||+.+.+..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999988864

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=94.81  E-value=0.016  Score=44.17  Aligned_cols=19  Identities=37%  Similarity=0.576  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHhh
Q psy9621          12 LLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~   30 (253)
                      .+|+|+.|+|||||+.++.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            4788999999999999874

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.80  E-value=0.011  Score=52.73  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++++|++|+|||||++.+.+
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            689999999999999987765

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=94.76  E-value=0.021  Score=48.29  Aligned_cols=106  Identities=14%  Similarity=0.054  Sum_probs=76.5

Q ss_pred             eeeeccccccccccccccccccceeeEEEEeccC----------ccchhhHHHHHHhhhhhcC--CCchhh--------h
Q psy9621         121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN----------EKSFDNILKWLRNIDEHAN--EDPQVV--------N  180 (253)
Q Consensus       121 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~--------~  180 (253)
                      ..-.|.+|++....+...++..+.+++++++++.          ..+|++...|..++.....  ..+..+        .
T Consensus       219 l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~  298 (402)
T 1azs_C          219 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA  298 (402)
T ss_dssp             EEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHH
T ss_pred             ceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhh
Confidence            3446999999998888899999999999999999          8999999999998876521  111100        0


Q ss_pred             hh----c---------------------------cchhHHHHH-----HH--------hCCceEEeeccCCCCHHHHHHH
Q psy9621         181 SW----V---------------------------CKHRGEAIA-----RE--------YGVRFMETSAKANINIEKAFIE  216 (253)
Q Consensus       181 ~~----~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~gi~~l~~~  216 (253)
                      ..    +                           ..+++..++     +.        .++.+++|||+++.||+.+|..
T Consensus       299 ~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~  378 (402)
T 1azs_C          299 EKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFND  378 (402)
T ss_dssp             HHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHH
T ss_pred             hhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHH
Confidence            00    0                           012333442     22        2466789999999999999999


Q ss_pred             HHHHHHhccC
Q psy9621         217 LATAIYDKTS  226 (253)
Q Consensus       217 l~~~~~~~~~  226 (253)
                      +...+....+
T Consensus       379 v~~~I~~~~l  388 (402)
T 1azs_C          379 CRDIIQRMHL  388 (402)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988876654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=94.76  E-value=0.016  Score=47.48  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...|++.|++|+|||+|++.+..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            35799999999999999999875

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=94.75  E-value=0.13  Score=41.80  Aligned_cols=20  Identities=30%  Similarity=0.361  Sum_probs=16.1

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      +++-|++|+|||++++.+..
T Consensus        51 ~L~~G~~G~GKT~la~~la~   70 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCH   70 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHH
Confidence            34456699999999999875

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.75  E-value=0.017  Score=47.15  Aligned_cols=23  Identities=35%  Similarity=0.547  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-.+++.|++|+|||+|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.75  E-value=0.021  Score=51.10  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5899999999999999988753

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=94.73  E-value=0.017  Score=47.27  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..|+|+|++|||||||...+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998874

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=94.72  E-value=0.024  Score=48.30  Aligned_cols=23  Identities=17%  Similarity=0.193  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..-|+|+|++||||||+.+++..
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999875

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=94.71  E-value=0.017  Score=47.44  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -.|++.|++|+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            47999999999999999998763

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.71  E-value=0.016  Score=49.48  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      --|++.|+||+|||+|..++.+
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999999875

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=94.70  E-value=0.016  Score=48.20  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -+.|+|++|+|||||+..+...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999998863

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.70  E-value=0.015  Score=48.02  Aligned_cols=22  Identities=32%  Similarity=0.652  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      +++|.|++|+||||+++.+...
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988753

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=94.70  E-value=0.016  Score=50.23  Aligned_cols=22  Identities=36%  Similarity=0.587  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -+++++|+||+|||+|++.+..
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=94.68  E-value=0.019  Score=43.49  Aligned_cols=21  Identities=29%  Similarity=0.335  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .|.+.|.+||||||+.+.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.66  E-value=0.014  Score=52.01  Aligned_cols=21  Identities=19%  Similarity=0.488  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++++|++|+|||||++.+.+
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g  391 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPR  391 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999988765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.63  E-value=0.024  Score=50.01  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++|+|+.|+|||||++.+.+-
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988864

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.62  E-value=0.017  Score=49.38  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-.|++.||||+|||+|.+++.+
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHH
Confidence            45799999999999999999875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.60  E-value=0.022  Score=50.14  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=94.59  E-value=0.025  Score=46.04  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-|+|+|++|||||+|..++..
T Consensus        11 ~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHH
Confidence            3578999999999999999874

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.56  E-value=0.017  Score=45.83  Aligned_cols=24  Identities=17%  Similarity=0.253  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-..|+|.|..||||||+++.|..
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999988875

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.53  E-value=0.019  Score=47.70  Aligned_cols=22  Identities=27%  Similarity=0.570  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.++|.|++|+|||+|++.+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.53  E-value=0.026  Score=50.52  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|+.|+|||||++.+.+-
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999988864

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.51  E-value=0.016  Score=48.35  Aligned_cols=24  Identities=33%  Similarity=0.231  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..-.++|.|++|+|||+|++.+..
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            344799999999999999998875

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.50  E-value=0.019  Score=49.15  Aligned_cols=23  Identities=30%  Similarity=0.345  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .--|++.|+||+|||+|.+++.+
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999999875

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.49  E-value=0.018  Score=47.46  Aligned_cols=21  Identities=29%  Similarity=0.670  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+++.|++|+|||++++.+..
T Consensus        60 ~~ll~G~~G~GKT~la~~la~   80 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTK   80 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998875

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.47  E-value=0.0088  Score=47.47  Aligned_cols=21  Identities=33%  Similarity=0.532  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+++.|++|+|||+|++.+..
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999999875

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=94.47  E-value=0.02  Score=46.63  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -|+|+|++|||||||..++...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            4789999999999999998753

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=94.46  E-value=0.02  Score=47.28  Aligned_cols=22  Identities=23%  Similarity=0.522  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-|+|.|++|||||||..+|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999988864

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=94.39  E-value=0.014  Score=47.91  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+++.|++|+|||+|++.+..
T Consensus        48 ~vll~G~pGtGKT~la~~la~   68 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAK   68 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            799999999999999998865

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.34  E-value=0.022  Score=50.99  Aligned_cols=21  Identities=29%  Similarity=0.662  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~   32 (253)
                      ++++|+.|+|||||++.+.+-
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl  401 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGA  401 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhcC
Confidence            799999999999999988764

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=94.32  E-value=0.023  Score=46.63  Aligned_cols=22  Identities=36%  Similarity=0.540  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++|.|++|+|||||++.+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            5899999999999999998753

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.31  E-value=0.022  Score=48.13  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-.|++.|+||+|||+|.+++.+
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHH
Confidence            34699999999999999999875

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=94.30  E-value=0.041  Score=41.82  Aligned_cols=31  Identities=26%  Similarity=0.165  Sum_probs=26.9

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      |+.....+..-|+|.|.+||||+++...+..
T Consensus         3 ~~~~~~~~~~II~itGk~~SGKd~va~~l~~   33 (202)
T 3ch4_B            3 MAPLGGAPRLVLLFSGKRKSGKDFVTEALQS   33 (202)
T ss_dssp             CCTTBCCCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccccccCCCEEEEEECCCCCChHHHHHHHHH
Confidence            6777777888999999999999999987764

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=94.30  E-value=0.018  Score=47.12  Aligned_cols=24  Identities=8%  Similarity=-0.080  Sum_probs=20.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..-.+++.|+||+|||++++.+..
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~   67 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMD   67 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999998874

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.29  E-value=0.023  Score=44.95  Aligned_cols=24  Identities=29%  Similarity=0.382  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      ...|++.|++|+|||+|.+.+...
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHh
Confidence            357999999999999999998754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=94.28  E-value=0.023  Score=46.62  Aligned_cols=24  Identities=33%  Similarity=0.404  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..-.|++.|++|+|||+|++.+..
T Consensus        54 ~~~~vll~G~~GtGKT~la~~ia~   77 (338)
T 3pfi_A           54 CLDHILFSGPAGLGKTTLANIISY   77 (338)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHH
Confidence            344799999999999999999865

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.27  E-value=0.022  Score=50.11  Aligned_cols=19  Identities=42%  Similarity=0.641  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHh
Q psy9621          11 KLLLIGDSGVGKTCVLFRF   29 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l   29 (253)
                      -++|+|++|+|||||++.|
T Consensus        41 ~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           41 STLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHH
Confidence            4799999999999999985

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=94.26  E-value=0.021  Score=47.78  Aligned_cols=23  Identities=35%  Similarity=0.518  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...+++.|++|+|||+|.+.+..
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998875

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=94.23  E-value=0.025  Score=47.07  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...|+|.|++|+|||+|++.+..
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999875

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=94.23  E-value=0.023  Score=47.27  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.|+|.|++|+|||+|++.+..
T Consensus        85 ~~iLL~GppGtGKT~la~ala~  106 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVAT  106 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHH
Confidence            3699999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-47
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-41
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-41
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	3e-39
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-38
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	3e-38
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	9e-38
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	8e-36
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-34
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-34
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	9e-34
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	3e-33
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	6e-31
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-30
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	7e-30
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	5e-27
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	9e-27
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-26
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-26
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	1e-24
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	8e-24
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-23
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-23
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	3e-23
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	6e-23
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	8e-23
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-22
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-22
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-22
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	5e-22
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-21
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-21
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	5e-20
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-20
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	7e-20
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	8e-20
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-19
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	7e-19
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-18
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-17
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-16
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	4e-16
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	5e-16
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-15
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	4e-15
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-15
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	4e-15
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-14
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	3e-14
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	5e-14
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-13
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-12
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-11
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-11
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	5e-11
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	8e-11
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	4e-07

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  153 bits (388), Expect = 1e-47
 Identities = 129/221 (58%), Positives = 146/221 (66%), Gaps = 51/221 (23%)

Query: 4   KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
           KTYD+LFKLLLIGDSGVGKTCVLFRFS+DAFN+TFISTIGIDFKI+T++L GK+IKLQIW
Sbjct: 1   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 60

Query: 64  DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKT 123
           DTAGQERF TITT+YYRGAMGIMLVYDITNEKSFDNI  W+RNI+EHA+ DVEKMILG  
Sbjct: 61  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG-- 118

Query: 124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWV 183
                                                            N+        V
Sbjct: 119 -------------------------------------------------NKCDVNDKRQV 129

Query: 184 CKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
            K RGE +A +YG++FMETSAKANIN+E AF  LA  I  K
Sbjct: 130 SKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  138 bits (348), Expect = 1e-41
 Identities = 93/216 (43%), Positives = 129/216 (59%), Gaps = 52/216 (24%)

Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           + K+LLIGDSGVGK+C+L RF +D FN +FI+TIGIDFKIKTVD+ GKK+KLQIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
           ERF TITT+YYRGAMGI+LVYDIT+E++F NI +W + ++EHAN++ + +++G   D   
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD--- 118

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                            ++      +                  
Sbjct: 119 ---------------------------------METRVVTADQG---------------- 129

Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
           EA+A+E G+ F+E+SAK + N+ + F  LA  I +K
Sbjct: 130 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (347), Expect = 2e-41
 Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 51/219 (23%)

Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YDFLFK++LIG++GVGKTC++ RF+   F     +TIG+DF IKTV++ G+K+KLQIWDT
Sbjct: 2   YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 61

Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQERF +IT SYYR A  ++L YDIT E+SF  + +WLR I+++A+  V  +++G    
Sbjct: 62  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG---- 117

Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                                          N+        V +
Sbjct: 118 -----------------------------------------------NKIDLAERREVSQ 130

Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
            R E  +    + ++ETSAK + N+EK F++LA  +  +
Sbjct: 131 QRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  133 bits (334), Expect = 3e-39
 Identities = 95/241 (39%), Positives = 131/241 (54%), Gaps = 56/241 (23%)

Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFKLLLIG+SGVGK+C+L RFSDD +   +ISTIG+DFKIKTV+L GK +KLQIWDT
Sbjct: 3   YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 62

Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQERF TIT+SYYRG+ GI++VYD+T+++SF+ +  WL+ ID +A   V K+++G    
Sbjct: 63  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG---- 118

Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                                          N+        V  
Sbjct: 119 -----------------------------------------------NKCDLKDKRVVEY 131

Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSGRDPLEAPDRVTIDKKPDR 245
              +  A    + F+ETSA  + N+E AF+ +A  I +  S ++  E     T  KK D+
Sbjct: 132 DVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE-----TTQKKEDK 186

Query: 246 G 246
           G
Sbjct: 187 G 187

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (328), Expect = 1e-38
 Identities = 90/218 (41%), Positives = 121/218 (55%), Gaps = 52/218 (23%)

Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWD 64
           YD  FK++L+GDSGVGKTC+L RF D AF   TFIST+GIDF+ K +D+ G K+KLQ+WD
Sbjct: 3   YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 62

Query: 65  TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK 124
           TAGQERF ++T +YYR A  ++L+YD+TN+ SFDNI  WL  I E+A  DV  M+LG   
Sbjct: 63  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 122

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
           D+A +                                                     V 
Sbjct: 123 DSAHER---------------------------------------------------VVK 131

Query: 185 KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
           +  GE +A+EYG+ FMETSAK  +N++ AF  +A  + 
Sbjct: 132 REDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 3e-38
 Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 51/217 (23%)

Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           Y ++FK ++IGD GVGK+C+L +F++  F      TIG++F  + +++ G+KIKLQIWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQERF  +T SYYRGA G ++VYDIT   +++++  WL +     N +   +++G   D
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                                                    V  
Sbjct: 121 ---------------------------------------------------LEAQRDVTY 129

Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY 222
              +  A E G+ F+E SAK   N+E AF+E A  IY
Sbjct: 130 EEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 166

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  128 bits (322), Expect = 9e-38
 Identities = 82/219 (37%), Positives = 117/219 (53%), Gaps = 51/219 (23%)

Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           +D++FK+L+IG+S VGKT  LFR++DD+F   F+ST+GIDFK+KT+    K+IKLQIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQER+ TITT+YYRGAMG +L+YDITNE+SF+ +  W   I  ++ ++ + +++G    
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG---- 117

Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                                          N+        V  
Sbjct: 118 -----------------------------------------------NKCDMEDERVVSS 130

Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
            RG  +A   G  F E SAK NIN+++ F  L   I +K
Sbjct: 131 ERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 8e-36
 Identities = 71/220 (32%), Positives = 110/220 (50%), Gaps = 51/220 (23%)

Query: 5   TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWD 64
           TYDFLFK L+IG++G GK+C+L +F +  F      TIG++F  K +++ GK +KLQIWD
Sbjct: 1   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 60

Query: 65  TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK 124
           TAGQERF ++T SYYRGA G +LVYDIT+ ++++ +  WL +    A++++  ++ G   
Sbjct: 61  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG--- 117

Query: 125 DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVC 184
                                                           N+     +  V 
Sbjct: 118 ------------------------------------------------NKKDLDADREVT 129

Query: 185 KHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
                  A+E  + F+ETSA    N+E+AF++ A  I +K
Sbjct: 130 FLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNK 169

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 1e-34
 Identities = 72/229 (31%), Positives = 111/229 (48%), Gaps = 60/229 (26%)

Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTV----------DLKG 55
           YD+L KLL +GDSGVGKT  L+R++D+ FN  FI+T+GIDF+ K V            K 
Sbjct: 2   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61

Query: 56  KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDV 115
            K+ LQ+WDTAGQERF ++TT+++R AMG +L++D+T+++SF N+  W+  +  +A  + 
Sbjct: 62  FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 121

Query: 116 EKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED 175
                                         I+L+                       N+ 
Sbjct: 122 ----------------------------PDIVLI----------------------GNKA 131

Query: 176 PQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
                  V + +   +A +YG+ + ETSA    N+EKA   L   I  +
Sbjct: 132 DLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 180

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 3e-34
 Identities = 75/221 (33%), Positives = 114/221 (51%), Gaps = 51/221 (23%)

Query: 6   YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           YD+LFK++LIGDSGVGK+ +L RF+ + FN    STIG++F  +++ + GK IK QIWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
           AGQER+  IT++YYRGA+G +LVYDI    +++N+ +WL+ + +HA+ ++  M++G    
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG---- 116

Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                                                          N+        V  
Sbjct: 117 -----------------------------------------------NKSDLRHLRAVPT 129

Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
               A A +  + F+ETSA  + N+E+AF  + T IY   S
Sbjct: 130 DEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS 170

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 9e-34
 Identities = 71/213 (33%), Positives = 102/213 (47%), Gaps = 51/213 (23%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K+L+IG+SGVGK+ +L RF+DD F+    +TIG+DFK+KT+ + G K KL IWDTAGQE
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           RF T+T SYYRGA G++LVYD+T   +F  +  WL  ++ +   +    +L   K     
Sbjct: 68  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNK----- 122

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                                             N  V ++ G 
Sbjct: 123 ----------------------------------------------IDKENREVDRNEGL 136

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIY 222
             AR++ + F+E SAK    ++ AF EL   I 
Sbjct: 137 KFARKHSMLFIEASAKTCDGVQCAFEELVEKII 169

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 3e-33
 Identities = 81/217 (37%), Positives = 115/217 (52%), Gaps = 51/217 (23%)

Query: 8   FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
           +LFK ++IGD+GVGK+C+L +F+D  F      TIG++F  + V++ GK+IKLQIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 68  QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127
           QE F +IT SYYRGA G +LVYDIT  ++F+++  WL +  +H++ ++  M++G   D  
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD-- 119

Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
                                                                  V +  
Sbjct: 120 -------------------------------------------------LESRRDVKREE 130

Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
           GEA ARE+G+ FMETSAK   N+E+AFI  A  IY K
Sbjct: 131 GEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 167

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 6e-31
 Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 41/222 (18%)

Query: 1   MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKL 60
           MA      + K +++GD  VGKTC+L  +++DAF   ++ T+  D    +V + GK+  L
Sbjct: 1   MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 59

Query: 61  QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMIL 120
            ++DTAGQE +  +    Y      ++ + + N  SF N+ +      +    +V  +++
Sbjct: 60  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI 119

Query: 121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVN 180
           G   D                                       LR+  +       +  
Sbjct: 120 GTQID---------------------------------------LRDDPKTLARLNDMKE 140

Query: 181 SWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
             +C  +G+ +A+E G   ++E SA     ++  F E   AI
Sbjct: 141 KPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 1e-30
 Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 51/216 (23%)

Query: 8   FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG 67
           + FK++L+G+  VGKT ++ R+ ++ FN   I+T+G  F  K +++ GK++ L IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 68  QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127
           QERFH +   YYR + G +LVYDIT+E SF  +  W++ + +    ++   I+G      
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG------ 115

Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
                                                        N+        V    
Sbjct: 116 ---------------------------------------------NKIDLEKERHVSIQE 130

Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAIYD 223
            E+ A   G +   TSAK N  IE+ F++L   + +
Sbjct: 131 AESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 7e-30
 Identities = 70/212 (33%), Positives = 102/212 (48%), Gaps = 51/212 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+ +G+  VGKT ++ RF  D+F+ T+ +TIGIDF  KT+ L+ + I+LQ+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           RF ++  SY R +   ++VYDITN  SF    KW+ ++      DV  M++G   D A +
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                                                V    GE
Sbjct: 121 R---------------------------------------------------QVSIEEGE 129

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
             A+E  V F+ETSAKA  N+++ F  +A A+
Sbjct: 130 RKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 5e-27
 Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 51/213 (23%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+G+S VGK+ ++ RF    F+    STIG  F  +TV L    +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           R+H++   YYRGA   ++VYDITNE+SF     W++ +   A+ ++   + G        
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 118

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                                      N+        V     +
Sbjct: 119 -------------------------------------------NKADLANKRAVDFQEAQ 135

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIY 222
           + A +  + FMETSAK ++N+ + F+ +A  + 
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 9e-27
 Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 49/214 (22%)

Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           LFK++L+GD GVGK+ ++ R+  + F+T    TIG++F  K +++ G  + +QIWDTAGQ
Sbjct: 6   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 65

Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
           ERF ++ T +YRG+   +L + + + +SF N+  W +    +A+    +           
Sbjct: 66  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF--------- 116

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                            +     ID             V     
Sbjct: 117 -------------------------------PFVILGNKIDIS--------ERQVSTEEA 137

Query: 189 EAIAREYG-VRFMETSAKANINIEKAFIELATAI 221
           +A  R+ G   + ETSAK   N+  AF E    +
Sbjct: 138 QAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 1e-26
 Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 41/217 (18%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ + F + ++ T+  D    TV + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
            +  +    Y      ++ + + +  SF+N+ +       H       +++G   D    
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID---- 118

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                              LR+      +  +     +     E
Sbjct: 119 -----------------------------------LRDDPSTIEKLAKNKQKPITPETAE 143

Query: 190 AIAREY-GVRFMETSAKANINIEKAFIELATAIYDKT 225
            +AR+   V+++E SA     ++  F E   A  +  
Sbjct: 144 KLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (246), Expect = 2e-26
 Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 41/213 (19%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K +++GD  VGKTC+L  ++ +AF   +I T+  D     V + GK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
            +  +    Y      ++ + + +  SF+N+         H   +   +++G   D    
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD---- 120

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                              LR+  +   +  +   + +   +G 
Sbjct: 121 -----------------------------------LRDDKDTIEKLKEKKLTPITYPQGL 145

Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELATAI 221
           A+A+E G V+++E SA     ++  F E   A+
Sbjct: 146 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.9 bits (232), Expect = 1e-24
 Identities = 50/213 (23%), Positives = 81/213 (38%), Gaps = 52/213 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +   + F   +  TI   ++ + V   G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQE 62

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
            +  +   Y R   G + V+ I N KSF++I ++   I    + D   M+L   K     
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC---- 118

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                                           +    V   + +
Sbjct: 119 -----------------------------------------------DLAARTVESRQAQ 131

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIY 222
            +AR YG+ ++ETSAK    +E AF  L   I 
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (228), Expect = 8e-24
 Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 41/213 (19%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            KL+++GD   GKTC+L   S D F   ++ T+  +  +  +++ GK+++L +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
            +  +    Y     I++ + I +  S +NI +      +H   +V  +++G  KD    
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL--- 118

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                               RN +    E  ++    V    G 
Sbjct: 119 ------------------------------------RNDEHTRRELAKMKQEPVKPEEGR 142

Query: 190 AIAREYG-VRFMETSAKANINIEKAFIELATAI 221
            +A   G   +ME SAK    + + F     A 
Sbjct: 143 DMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 91.9 bits (227), Expect = 1e-23
 Identities = 50/217 (23%), Positives = 85/217 (39%), Gaps = 53/217 (24%)

Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K++++G  GVGK+ +  +F  D F   +  T   D   K V L G+++++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTA 127
           E +  I  +Y+R   G + V+ IT  +SF     +   I     +E+V  +++G      
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG------ 116

Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
                                                        N+        V    
Sbjct: 117 ---------------------------------------------NKSDLEDKRQVSVEE 131

Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
            +  A ++ V ++ETSAK   N++K F +L   I  +
Sbjct: 132 AKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.6 bits (226), Expect = 1e-23
 Identities = 61/214 (28%), Positives = 90/214 (42%), Gaps = 54/214 (25%)

Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           +FK+++IGDS VGKTC+ +RF    F     +TIG+DF+ + VD+ G++IK+Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 69  ERFHTI-TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127
           ERF       YYR    ++ VYD+TN  SF ++  W+    +H   +    IL   K   
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
                                                                  V    
Sbjct: 122 RSAI--------------------------------------------------QVPTDL 131

Query: 188 GEAIAREYGVRFMETSAKA---NINIEKAFIELA 218
            +  A  + +   ETSAK    N ++E  F+ LA
Sbjct: 132 AQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 90.9 bits (224), Expect = 3e-23
 Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 47/216 (21%)

Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K++++GDSGVGKT ++ ++ +  F+  + +TIG DF  K V +  + + +QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
           ERF ++  ++YRGA   +LV+D+T   +F  +  W       A+    +           
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-------- 113

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                             +++                       N+          K   
Sbjct: 114 -----------------FVVL----------------------GNKIDLENRQVATKRAQ 134

Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
                +  + + ETSAK  IN+E+AF  +A     +
Sbjct: 135 AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 170

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.1 bits (222), Expect = 6e-23
 Identities = 56/213 (26%), Positives = 85/213 (39%), Gaps = 51/213 (23%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           ++L+++G  GVGK+ +  +F    F T +  TI  D   K   +  +  +L I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
            F  +   Y R   G +LV+ +T+  SF+ I K+ R I    + D   MIL   K     
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
           +R  T                                                     G+
Sbjct: 125 QRQVTQ--------------------------------------------------EEGQ 134

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIY 222
            +AR+  V +ME SAK  +N+++AF EL   I 
Sbjct: 135 QLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (221), Expect = 8e-23
 Identities = 49/213 (23%), Positives = 84/213 (39%), Gaps = 51/213 (23%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +K++++G  GVGK+ +  +F    F   +  TI  DF  K +++      L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +F ++   Y +   G +LVY + N++SF +I      I      +               
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE--------------- 107

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                         + ++LV                       N+        V    G 
Sbjct: 108 -------------KVPVILV----------------------GNKVDLESEREVSSSEGR 132

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIY 222
           A+A E+G  FMETSAK+   +++ F E+   + 
Sbjct: 133 ALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.9 bits (219), Expect = 1e-22
 Identities = 60/212 (28%), Positives = 90/212 (42%), Gaps = 51/212 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K+ L+GD+GVGK+ +++RF +D+F+     TIG  F  KTV  + +  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           RF  +   YYRG+   ++VYDIT E++F  +  W+R + +H    +   I          
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAI---------- 114

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                                      N+        V +   +
Sbjct: 115 -----------------------------------------AGNKCDLTDVREVMERDAK 133

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
             A      F+ETSAK  INI + FIE++  I
Sbjct: 134 DYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (219), Expect = 1e-22
 Identities = 51/215 (23%), Positives = 86/215 (40%), Gaps = 54/215 (25%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++G  GVGK+ +  +F    F   +  TI  D   K V++  ++  L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH-ANEDVEKMILGKTKDTAG 128
           +F  +   Y +   G  LVY IT + +F+++      I      EDV  +++G   D   
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD--- 119

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                                                 V K +G
Sbjct: 120 ------------------------------------------------LEDERVVGKEQG 131

Query: 189 EAIAREY-GVRFMETSAKANINIEKAFIELATAIY 222
           + +AR++    F+E+SAK+ IN+ + F +L   I 
Sbjct: 132 QNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.2 bits (217), Expect = 2e-22
 Identities = 58/214 (27%), Positives = 91/214 (42%), Gaps = 48/214 (22%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KL+L+G++ VGK+ ++ RF  + F      TIG  F  + V +    +K +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
           F ++   YYR A   ++VYD+T  +SF     W++ + E A++D+   ++G   D     
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDM---- 120

Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
                                                         +     V +  GE 
Sbjct: 121 --------------------------------------------LQEGGERKVAREEGEK 136

Query: 191 IAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
           +A E G+ F ETSAK   N+   F+ +   I  K
Sbjct: 137 LAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.4 bits (215), Expect = 5e-22
 Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 51/216 (23%)

Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
             KL+++G  GVGK+ +  +F    F + +      D   K   + G   +L I DTAGQ
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAG 128
           E F  +   Y R   G +LV+ I + +SF+ + K    I    + D   ++L   K    
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK---- 120

Query: 129 QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRG 188
                                                                 V +   
Sbjct: 121 ----------------------------------------------ADLESQRQVPRSEA 134

Query: 189 EAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
            A    + V + E SAK  +N+++AF +L  A+   
Sbjct: 135 SAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 170

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.3 bits (212), Expect = 2e-21
 Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 46/217 (21%)

Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKI-KLQIWDTAG 67
           + K++++GDSGVGKT ++ R+ +D ++  + +TIG DF  K V + G K+  +Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 68  QERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA 127
           QERF ++  ++YRGA   +LVYD+TN  SF+NI  W      HAN +  +          
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET--------- 112

Query: 128 GQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHR 187
                              +++ +               + +E      +     + K  
Sbjct: 113 ----------------FPFVILGNK-------------IDAEESKKIVSEKSAQELAKSL 143

Query: 188 GEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
           G+       +    TSAK  IN++ AF E+A +   +
Sbjct: 144 GD-------IPLFLTSAKNAINVDTAFEEIARSALQQ 173

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.5 bits (210), Expect = 2e-21
 Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 52/216 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +KL+++GD GVGK+ +  +F    F   +  TI  D  +K  ++  +   L + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQE 63

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
            F  +   Y R   G ++VY +T++ SF+++ ++ + I    + +   MIL   K     
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
            R                                                   V + +G+
Sbjct: 124 LR--------------------------------------------------KVTRDQGK 133

Query: 190 AIAREYGVRFMETSAK-ANINIEKAFIELATAIYDK 224
            +A +Y + ++ETSAK   +N++K F +L   I  +
Sbjct: 134 EMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.4 bits (202), Expect = 5e-20
 Identities = 40/216 (18%), Positives = 87/216 (40%), Gaps = 42/216 (19%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K++++GDS  GKT +L  F+ D F   ++ T+  +    + ++  ++I+L +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
           +  +    Y  +  +++ +DI+  ++ D++LK  +   +    + + +++G   D     
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD----- 117

Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
                                             LR       E      + V   +G  
Sbjct: 118 ----------------------------------LRTDVSTLVELSNHRQTPVSYDQGAN 143

Query: 191 IAREYG-VRFMETSAKANIN-IEKAFIELATAIYDK 224
           +A++ G   ++E SA  + N +   F     A  +K
Sbjct: 144 MAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 179

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 81.9 bits (201), Expect = 6e-20
 Identities = 32/212 (15%), Positives = 64/212 (30%), Gaps = 52/212 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G    GKT +L++       TT I T+G + +  T     K +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTY----KNVKFNVWDVGGQD 67

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +   +   YY G  G++ V D  +    D   + L  I          +++   K     
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ---- 123

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                                      +    +    + +  G 
Sbjct: 124 -------------------------------------------DLPDAMKPHEIQEKLGL 140

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
              R+       + A +   + +    L +  
Sbjct: 141 TRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 81.9 bits (201), Expect = 7e-20
 Identities = 35/215 (16%), Positives = 64/215 (29%), Gaps = 52/215 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G  G GKT +L+R       TT   TIG + +  +     K +KL +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGFNVETLSY----KNLKLNVWDLGGQT 72

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
                   YY     ++ V D T++       K L  + +        +++   K     
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD--- 129

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                                +  E + E               
Sbjct: 130 --------------------------------QPGALSASEVSKE------------LNL 145

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
              ++     + +SA     I +    L   I ++
Sbjct: 146 VELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.7 bits (200), Expect = 8e-20
 Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 52/212 (24%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           K++++G+  VGK+ ++ R+    F   +  TIG+DF  + + +  + ++L +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
           F  IT +YYRGA   +LV+  T+ +SF+ I  W   +                       
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV------------------- 104

Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
                                        +I   L        +D  + N          
Sbjct: 105 ----------------------------GDIPTALVQNKIDLLDDSCIKNEEAEGL---- 132

Query: 191 IAREYGVRFMETSAKANINIEKAFIELATAIY 222
            A+   +RF  TS K ++N+ + F  LA    
Sbjct: 133 -AKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 79.3 bits (194), Expect = 5e-19
 Identities = 25/211 (11%), Positives = 58/211 (27%), Gaps = 52/211 (24%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           ++L++G    GKT +L++            T           ++ K I   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
              +   Y++   G++ V D  + +  +   + L  +          +++   K      
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ----- 111

Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
                                                   +A        + +    G  
Sbjct: 112 -------------------------------------DLPNAMNA-----AEITDKLGLH 129

Query: 191 IAREYGVRFMETSAKANINIEKAFIELATAI 221
             R        T A +   + +    L+  +
Sbjct: 130 SLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.2 bits (197), Expect = 7e-19
 Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 8/111 (7%)

Query: 4   KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIW 63
           + Y    +LLL+G    GK+ ++ +          + T GI         +  K+   ++
Sbjct: 1   QVYRATHRLLLLGAGESGKSTIVKQMRIL----HVVLTSGIFET----KFQVDKVNFHMF 52

Query: 64  DTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANED 114
           D  GQ          +     I+ V   ++             + E  N  
Sbjct: 53  DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLF 103

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 2e-18
 Identities = 48/216 (22%), Positives = 78/216 (36%), Gaps = 50/216 (23%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +++ + G  GVGK+ ++ RF    F  ++I T+   ++            LQI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISC-DKSICTLQITDTTGSH 61

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +F  +           +LVY IT+ +S + +      I E   +                
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES------------- 108

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                         + IMLV                       N+  +  +  V     E
Sbjct: 109 --------------IPIMLV----------------------GNKCDESPSREVQSSEAE 132

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDKT 225
           A+AR +   FMETSAK N N+++ F EL      +T
Sbjct: 133 ALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRT 168

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 1e-17
 Identities = 44/216 (20%), Positives = 72/216 (33%), Gaps = 53/216 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            KL + G +GVGK+ ++ RF    F   +  T+   ++ +      + + ++I DT   +
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATI-DDEVVSMEILDT-AGQ 60

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
                   + R   G +LVYDIT+  SF+ +L     +DE        +IL         
Sbjct: 61  EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV-------- 112

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                                      N+     +  V    GE
Sbjct: 113 ------------------------------------------GNKADLDHSRQVSTEEGE 130

Query: 190 AIAREYGVRFMETSAKAN-INIEKAFIELATAIYDK 224
            +A E    F E SA     NI + F EL   +  +
Sbjct: 131 KLATELACAFYECSACTGEGNITEIFYELCREVRRR 166

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.7 bits (177), Expect = 3e-16
 Identities = 25/212 (11%), Positives = 55/212 (25%), Gaps = 20/212 (9%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            KLLL+G    GK+  + +      +   + T GI           + +  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGSG--VPTTGIIEYP----FDLQSVIFRMVDVGGQR 56

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
                    +     IM +  ++              ++E        +           
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII----------T 106

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
             +   ++         +L   I       +++ +    D    +        +      
Sbjct: 107 YPWFQNSSVILFLNKKDLLEEKIMYS----HLVDYFPEYDGPQRDAQAAREFILKMFVDL 162

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
               +  +    T A    NI   F  +   I
Sbjct: 163 NPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 194

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (174), Expect = 4e-16
 Identities = 40/212 (18%), Positives = 76/212 (35%), Gaps = 51/212 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K+ ++G   VGK+ +  +F +  F  ++  TI  +   K + + G++  LQ+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
            +     +Y     G +LVY +T+ KSF+ I      + +   +    ++L         
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIML--------- 114

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                                      N+    +   +    G+
Sbjct: 115 -----------------------------------------VGNKKDLHMERVISYEEGK 133

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
           A+A  +   F+E+SAK N      F  +    
Sbjct: 134 ALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.3 bits (173), Expect = 5e-16
 Identities = 31/208 (14%), Positives = 57/208 (27%), Gaps = 45/208 (21%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
           KLL +G    GKT +L    +D       +T+   +   + +L    IK   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 71  FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE 130
              +   Y+    GI+ + D  + + FD     L  +   A       ++   K      
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNK------ 110

Query: 131 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEA 190
                                               +  E  +         +     + 
Sbjct: 111 -----------------------------IDAPNAVSEAELRSALGL-----LNTTGSQR 136

Query: 191 IAREYGVRFMETSAKANINIEKAFIELA 218
           I  +  V     S        +AF  L+
Sbjct: 137 IEGQRPVEVFMCSVVMRNGYLEAFQWLS 164

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (169), Expect = 2e-15
 Identities = 45/217 (20%), Positives = 80/217 (36%), Gaps = 54/217 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           FKL+L+GD G GKT  + R     F   +++T+G++            IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +F  +   YY  A   ++++D+T+  ++ N+  W R++          +   K       
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNK------- 116

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                                 +D    +       +  K    
Sbjct: 117 --------------------------------------VDIKDRKVKAKSIVFHRKK--- 135

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS 226
                  +++ + SAK+N N EK F+ LA  +    +
Sbjct: 136 ------NLQYYDISAKSNYNFEKPFLWLARKLIGDPN 166

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 69.3 bits (168), Expect = 4e-15
 Identities = 26/212 (12%), Positives = 63/212 (29%), Gaps = 52/212 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            K++++G    GKT +L++FS +    T  +      +I   +      +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN-----TRFLMWDIGGQE 70

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
              +   +YY     +++V D T+ +      + L  +  H +     ++          
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL---------- 120

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                D+    +   I ++L                        
Sbjct: 121 ---------------IFANKQDVKECMTVAEISQFL----------------------KL 143

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
              +++        A     + +    + + +
Sbjct: 144 TSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 68.9 bits (167), Expect = 4e-15
 Identities = 33/215 (15%), Positives = 66/215 (30%), Gaps = 52/215 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            +LL++G    GKT +L +F+ +      + TI          L+ +  KL IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGE-----DVDTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
              +   +Y+    G++ V D  + +   +  + L+++          +++         
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLI--------- 108

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                D+    S + I + L                        
Sbjct: 109 ----------------FANKQDLPGALSCNAIQEAL----------------------EL 130

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
              R +  R    SA    ++      L   I  +
Sbjct: 131 DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.5 bits (169), Expect = 4e-15
 Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 7/105 (6%)

Query: 9   LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ 68
           L K+LL+G    GK+  L +            T GI       D + K +  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY----DFEIKNVPFKMVDVGGQ 54

Query: 69  ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE 113
                     +     I+ +   +         +    + E  N 
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNI 99

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (164), Expect = 1e-14
 Identities = 34/215 (15%), Positives = 68/215 (31%), Gaps = 52/215 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
           +K+LL+G  GVGK+ +   F          +        +++ + G++  L ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPE--AEAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
               +           ++VY +T++ SF+   +    +      D   +IL   K    +
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
            R                                                        G 
Sbjct: 120 SREV--------------------------------------------------SVDEGR 129

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
           A A  +  +F+ETSA  + N++  F  +   I  +
Sbjct: 130 ACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 164

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 3e-14
 Identities = 28/215 (13%), Positives = 63/215 (29%), Gaps = 52/215 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            +L ++GD+  GK+ ++ RF   ++    +     +   K + + G+   + I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
                   +   A  ++ V+ + +E SF  + +    +     E    + L         
Sbjct: 64  DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLAL--------- 109

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                               R + +                   
Sbjct: 110 ----------------------ALVGTQDRISASSPRVVGDARAR--------------A 133

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
             A      + ET A   +N+++ F E+A  +   
Sbjct: 134 LCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTL 168

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 66.1 bits (160), Expect = 5e-14
 Identities = 33/219 (15%), Positives = 63/219 (28%), Gaps = 52/219 (23%)

Query: 3   KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQI 62
           K   D   ++LL+G    GKT +L + + +   +    T G + K        +  KL +
Sbjct: 10  KSAPDQEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIKSVQS----QGFKLNV 64

Query: 63  WDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGK 122
           WD  GQ +      SY+     ++ V D  + K F+   + L  + E        +++  
Sbjct: 65  WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA 124

Query: 123 TKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSW 182
            K                          D+        I + L                 
Sbjct: 125 NK-------------------------QDLLTAAPASEIAEGL----------------- 142

Query: 183 VCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI 221
                     R+   +    SA     ++     +   +
Sbjct: 143 -----NLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 64.3 bits (155), Expect = 3e-13
 Identities = 21/212 (9%), Positives = 48/212 (22%), Gaps = 40/212 (18%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            KL+ +G    GKT +L    DD       +      ++         +    +D  G  
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG-----MTFTTFDLGGHI 68

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           +   +  +Y     GI+ + D  + +      + L ++          +++   K     
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNK----- 123

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                                + +           +        
Sbjct: 124 ------------------------------IDRPEAISEERLREMFGLYGQTTGKGSVSL 153

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
                  +     S        + F  +A  I
Sbjct: 154 KELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.7 bits (151), Expect = 1e-12
 Identities = 26/206 (12%), Positives = 56/206 (27%), Gaps = 25/206 (12%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            KLLL+G    GK+ ++ +        T I      FK             +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHF---------KMFDVGGQR 53

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
                    + G   I+    +++        + +  + E                    
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC----------N 103

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
            ++ T T+         +    I          ++       +N   +      C+    
Sbjct: 104 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEY-----AGSNTYEEAAAYIQCQFEDL 158

Query: 190 AIAREYGVRF-METSAKANINIEKAF 214
              ++    +   T A    N++  F
Sbjct: 159 NKRKDTKEIYTHFTCATDTKNVQFVF 184

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 1e-11
 Identities = 31/219 (14%), Positives = 68/219 (31%), Gaps = 50/219 (22%)

Query: 7   DFLFKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDT 65
           +  ++++LIG+ GVGK+ +   F+    +  +    +G D   +T+ + G+   + + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 66  AGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKD 125
              +  +     +            + +     +  K      +       + I      
Sbjct: 61  WENKGENEWLHDHCM--QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP----- 113

Query: 126 TAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCK 185
                               I+LV                       N+   V    V  
Sbjct: 114 --------------------IILV----------------------GNKSDLVRCREVSV 131

Query: 186 HRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
             G A A  +  +F+ETSA    N+++ F  +   +  +
Sbjct: 132 SEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 170

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 2e-11
 Identities = 30/215 (13%), Positives = 56/215 (26%), Gaps = 52/215 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            ++L++G  G GKT +L+R       TT               +  K +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
                   YY     ++ V D  +          L  + E        +++         
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVV--------- 111

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                D+                 E                 G 
Sbjct: 112 ----------------FANKQDMEQA----------MTSSEM------------ANSLGL 133

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAIYDK 224
              ++   +  +TSA     +++A   L   +  +
Sbjct: 134 PALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 5e-11
 Identities = 31/212 (14%), Positives = 66/212 (31%), Gaps = 51/212 (24%)

Query: 10  FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQE 69
            +L L+G    GKT  +   +   FN   I T+G + +     +    + +++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR----KITKGNVTIKLWDIGGQP 58

Query: 70  RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ 129
           RF ++   Y RG   I+ + D  +++  +     L N+ +        +++   K     
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNK----- 113

Query: 130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE 189
                                D+        +++ +                        
Sbjct: 114 --------------------RDLPGALDEKELIEKM----------------------NL 131

Query: 190 AIAREYGVRFMETSAKANINIEKAFIELATAI 221
           +  ++  +     S K   NI+     L    
Sbjct: 132 SAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (138), Expect = 8e-11
 Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 2/111 (1%)

Query: 11  KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER 70
            +L +G    GKT +  R     +  T  ++I     I  V+         I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 71  FHTITTSYYRGAMGIMLVYDITN-EKSFDNILKWLRNIDEHANEDVEKMIL 120
              +   +   A  ++ V D    ++   ++ ++L  +   +        L
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSL 111

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.9 bits (110), Expect = 4e-07
 Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 7/111 (6%)

Query: 12  LLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF 71
           +++ G    GKT +L   +      +   T+     +   D  G  + L  +    + R+
Sbjct: 6   IIIAGPQNSGKTSLLTLLT----TDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61

Query: 72  HT---ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMI 119
                + T        I +V    + K      ++L +I        E  I
Sbjct: 62  KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.97
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.92
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.92
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.91
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.9
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.9
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.89
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.88
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.87
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.87
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.87
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.85
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.84
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.84
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.83
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.83
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.83
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.82
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.81
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.8
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.79
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.78
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.78
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.72
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.72
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.72
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.69
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.68
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.63
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.61
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.6
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.51
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.51
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.47
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.42
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.14
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.14
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.85
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.75
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.74
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.65
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.63
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.56
d1okkd2	207	GTPase domain of the signal recognition particle r	98.35
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.35
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.24
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.22
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.11
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.06
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.06
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.91
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.88
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.86
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.74
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.73
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.55
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.49
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.43
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.39
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.32
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.31
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.29
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.25
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.24
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.23
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.2
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.19
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.17
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.09
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.08
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.08
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.04
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.03
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.02
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.0
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.98
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.97
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.95
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.88
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.86
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.85
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.84
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.84
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.8
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.79
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.78
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.77
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.76
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.75
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.73
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.69
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.69
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.66
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.66
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.65
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.65
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.64
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.63
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.62
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.62
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.62
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.61
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.59
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.56
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.53
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.52
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.51
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.49
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.48
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.47
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.47
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.46
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.45
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.43
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.42
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.42
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.42
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.41
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.25
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.24
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.23
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.2
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.17
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.16
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.15
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.11
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.08
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.06
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.04
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.03
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.94
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	95.86
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.81
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.81
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.8
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.73
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.72
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.64
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.63
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.62
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.6
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.59
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.58
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.56
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.49
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.33
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.22
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.16
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.15
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.04
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.02
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.8
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.79
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.78
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.68
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.66
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.59
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.57
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.55
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.54
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.47
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.45
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.29
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.27
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.27
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.22
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.16
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.1
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.08
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.05
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.92
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.75
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.63
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	93.61
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	93.49
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.45
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.4
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.39
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.21
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.07
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.07
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.05
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.9
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.81
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	92.79
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.77
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.72
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	92.68
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.57
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.45
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.42
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.13
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.77
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.61
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.41
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	90.54
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	90.52
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.14
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	89.94
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	89.18
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	88.67
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.59
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	88.46
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	88.42
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.38
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	86.43
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	86.25
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	86.01
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	85.63
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	85.15
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.03
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	85.01
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.78
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	84.63
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	84.55
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	84.33
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	84.14
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	83.79
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	83.54
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.45
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	83.13
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	83.01
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	82.9
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	82.35
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	82.27
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	82.23
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	81.96
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	81.91
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	81.27

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.9e-37  Score=232.17  Aligned_cols=168  Identities=49%  Similarity=0.902  Sum_probs=154.4

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      +++.+||+|+|++|||||||+++|..+.+.+.+.++.+.+.....+......+.+.+|||||++++..++..+++++|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            67889999999999999999999999999999999999899888888888999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      |+|||+++++++..+..|+..+......+.|+++++||.|+.                                      
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~--------------------------------------  123 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME--------------------------------------  123 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCG--------------------------------------
T ss_pred             EEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccc--------------------------------------
Confidence            999999999999999999988888777889999999999987                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                              ....     +..++.+++++.+++++++|||++|.||+++|+.|++.+.++
T Consensus       124 --------~~~~-----v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~ek  169 (169)
T d3raba_         124 --------DERV-----VSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK  169 (169)
T ss_dssp             --------GGCC-----SCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHTC
T ss_pred             --------cccc-----cchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHHhhC
Confidence                    2222     566778899999999999999999999999999999988764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.9e-37  Score=229.67  Aligned_cols=163  Identities=30%  Similarity=0.624  Sum_probs=150.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      -+||+|+|++|||||||+++|..+.+...+.||++.++........+..+.+.+|||+|++++..++..++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            37999999999999999999999999999999999988888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ||++++.+++.+..|++++.++. .++|+++||||+|+.                                         
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~iilVgnK~Dl~-----------------------------------------  119 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLL-----------------------------------------  119 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGG-----------------------------------------
T ss_pred             EeccchhhhhhcccccccccccC-CCceEEEeeccCCcc-----------------------------------------
Confidence            99999999999999999998876 689999999999987                                         


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                           ..+.     +..+++++++++++++++++||++|.||+++|+.|++.+++
T Consensus       120 -----~~~~-----v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~lq  164 (164)
T d1z2aa1         120 -----DDSC-----IKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ  164 (164)
T ss_dssp             -----GGCS-----SCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             -----ccee-----eeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHHHhC
Confidence                 3333     56677899999999999999999999999999999998763

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-36  Score=229.40  Aligned_cols=165  Identities=36%  Similarity=0.729  Sum_probs=146.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      +.+||+|+|++|||||||+++|..+.+...+.|+.+.++....+..++..+.+.+||++|++++..++..+++++|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            56899999999999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      |||+++++||+.+..|+..+........|++++|||+|+.                                        
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~----------------------------------------  121 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE----------------------------------------  121 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG----------------------------------------
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccc----------------------------------------
Confidence            9999999999999999999888777889999999999997                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                            ..+.     +..++++++++++++++++|||++|.||+++|..|++.+.+
T Consensus       122 ------~~~~-----v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         122 ------KERH-----VSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             ------GGCC-----SCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             ------cccc-----cchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHHHHhh
Confidence                  3333     66788999999999999999999999999999999998864

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=229.97  Aligned_cols=168  Identities=48%  Similarity=0.839  Sum_probs=154.6

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      +++.+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||+|+++|..++..++++++++
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~   81 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL   81 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence            67889999999999999999999999999999899999899989999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      ++|||++++.++..+..|+..+.+.....+|+++++||+|+.                                      
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~--------------------------------------  123 (171)
T d2ew1a1          82 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA--------------------------------------  123 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG--------------------------------------
T ss_pred             EEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccc--------------------------------------
Confidence            999999999999999999999988777889999999999986                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                              +...     +..++++++++.+++++++|||++|.||+++|..|++.+...
T Consensus       124 --------~~~~-----v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~~l~~~  169 (171)
T d2ew1a1         124 --------ERRE-----VSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE  169 (171)
T ss_dssp             --------GGCS-----SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             --------cccc-----hhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHHHHHHh
Confidence                    3333     566778999999999999999999999999999999887654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-36  Score=227.66  Aligned_cols=170  Identities=29%  Similarity=0.474  Sum_probs=151.5

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      |....+||+|+|++|||||||+++|..+.+...+.++.. +.....+.+++..+.+.+||++|++++..++..+++++++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            456789999999999999999999999999998888864 5556778889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      +|+|||++++.||..+..|+..+.+.. ..++|+++||||+|+.                                    
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~------------------------------------  124 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE------------------------------------  124 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG------------------------------------
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechh------------------------------------
Confidence            999999999999999999999987654 4689999999999986                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                ..+.     ...++++.+++.+++++++|||++|.||+++|+.|++.+.++++
T Consensus       125 ----------~~~~-----~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~k~~~  172 (173)
T d2fn4a1         125 ----------SQRQ-----VPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE  172 (173)
T ss_dssp             ----------GGCC-----SCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred             ----------hccc-----cchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHhc
Confidence                      2232     55677899999999999999999999999999999999877653

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-36  Score=228.66  Aligned_cols=172  Identities=42%  Similarity=0.770  Sum_probs=156.8

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      ++++.+||+|+|++|||||||+++|..+.+.+.+.++.+.++....+..++....+.+|||+|++++..++..+++.+++
T Consensus         1 ~~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (174)
T d2bmea1           1 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   80 (174)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             CccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCE
Confidence            47889999999999999999999999999999999999888888888888899999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      +|+|||.++++++..+..|+..+......++|+++++||+|+.                                     
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~-------------------------------------  123 (174)
T d2bmea1          81 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-------------------------------------  123 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-------------------------------------
T ss_pred             EEEEEecccchhHHHHhhhhcccccccCCceEEEEEEeccccc-------------------------------------
Confidence            9999999999999999999999988877899999999999986                                     


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSG  227 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  227 (253)
                               ....     .......++++.+++++++|||++|.||+++|..|++.+.++.+.
T Consensus       124 ---------~~~~-----~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~~i~~~~~~  172 (174)
T d2bmea1         124 ---------ADRE-----VTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES  172 (174)
T ss_dssp             ---------GGCC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHS
T ss_pred             ---------chhc-----hhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHHHHHHHhc
Confidence                     2222     555677899999999999999999999999999999998876544

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-36  Score=227.00  Aligned_cols=165  Identities=41%  Similarity=0.808  Sum_probs=152.4

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      +++.+||+|+|++|||||||+++|..+.+...+.++.+.++......+++..+.+.+||++|++.+..++..+++++|++
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~   80 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   80 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             CcEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence            57789999999999999999999999999999899888889988999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      |+|||+++++++..+..|+..+.+......|+++++||+|+.                                      
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~--------------------------------------  122 (166)
T d1z0fa1          81 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE--------------------------------------  122 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG--------------------------------------
T ss_pred             EEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccch--------------------------------------
Confidence            999999999999999999999988877899999999999986                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                              ....     ...++++++++.+++++++|||++|.||+++|..|++.+
T Consensus       123 --------~~~~-----~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         123 --------AQRD-----VTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             --------GGCC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             --------hhcc-----cHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence                    2232     555678999999999999999999999999999999876

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-36  Score=228.71  Aligned_cols=182  Identities=26%  Similarity=0.471  Sum_probs=151.2

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhc
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYR   80 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (253)
                      |+.-|....+||+|+|++|||||||+++|..+.+...+.||++ +.....+...+..+.+.+||++|++.+..++..+++
T Consensus         1 m~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~   79 (185)
T d2atxa1           1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP   79 (185)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred             CCCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhccc
Confidence            8888999999999999999999999999999999999999987 455566778888999999999999999999999999


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      ++|++++|||+++++||+.+..|.....+....++|+++|+||+|+..+...                            
T Consensus        80 ~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~----------------------------  131 (185)
T d2atxa1          80 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKT----------------------------  131 (185)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHH----------------------------
T ss_pred             ccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhh----------------------------
Confidence            9999999999999999998765444444444578999999999999732111                            


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                          .......  ..+.     +..+++++++++++ ++|++|||++|.||+++|+.+++.++
T Consensus       132 ----~~~~~~~--~~r~-----v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         132 ----LARLNDM--KEKP-----ICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             ----HHHHTTT--TCCC-----CCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ----hhhhhhc--cccc-----ccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence                0000000  1222     67778899999998 79999999999999999999998875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=5.3e-36  Score=225.66  Aligned_cols=164  Identities=30%  Similarity=0.554  Sum_probs=145.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      +.+||+|+|++|||||||+++|..+.+...+.||.+.++. ..+.+++..+.+.+||++|++++..++..+++++|++|+
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-cccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            5789999999999999999999999999999999987765 567788899999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |||++++.+++.+..|++++.+.. ..++|+++|+||+|+.                                       
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~---------------------------------------  122 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE---------------------------------------  122 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG---------------------------------------
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEecccccc---------------------------------------
Confidence            999999999999999999988764 4689999999999986                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                             ..+.     +..++++++++.+++++++|||++|.||+++|..|++.+..
T Consensus       123 -------~~~~-----v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         123 -------DKRQ-----VSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             -------GGCC-----SCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             -------cccc-----ccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHHHC
Confidence                   3333     66778899999999999999999999999999999998765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-36  Score=224.13  Aligned_cols=163  Identities=26%  Similarity=0.428  Sum_probs=147.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      +.+||+|+|++|||||||+++|.++.+...+.||.+.++. ..+.+++..+.+.+||++|.+.+..++..+++++|++|+
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEE-EEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccc-eEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            4689999999999999999999999999999999987764 667889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |||++++++|..+..|+..+.++. ..++|+++++||+|+.                                       
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~---------------------------------------  122 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH---------------------------------------  122 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCG---------------------------------------
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccc---------------------------------------
Confidence            999999999999999999987765 4679999999999986                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                             ..+.     +..++++++++++++++++|||++|.||+++|..|++.+.
T Consensus       123 -------~~r~-----v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         123 -------MERV-----ISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             -------GGCC-----SCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             -------cccc-----hhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHHhc
Confidence                   3333     6667889999999999999999999999999999998764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.8e-36  Score=227.56  Aligned_cols=171  Identities=76%  Similarity=1.202  Sum_probs=127.7

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      +.+++.+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|
T Consensus         1 ~~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~   80 (173)
T d2fu5c1           1 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   80 (173)
T ss_dssp             CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCS
T ss_pred             CcccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCC
Confidence            36788999999999999999999999999999898999999999899999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      ++|+|||++++.+++.+..|...+......+.|+++++||.|+.                                    
T Consensus        81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~------------------------------------  124 (173)
T d2fu5c1          81 GIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN------------------------------------  124 (173)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC------------------------------------
T ss_pred             EEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccch------------------------------------
Confidence            99999999999999999999999988877889999999999987                                    


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                ....     ...+++.++++.+++++++|||++|.||+++|++|++.+..++
T Consensus       125 ----------~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i~~k~  171 (173)
T d2fu5c1         125 ----------DKRQ-----VSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM  171 (173)
T ss_dssp             ----------SCCC-----SCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHH
T ss_pred             ----------hhcc-----cHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence                      3333     4456678889999999999999999999999999999987765

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-35  Score=223.13  Aligned_cols=165  Identities=28%  Similarity=0.525  Sum_probs=148.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      +++||+++|++|||||||+++|.++.+.+.+.|+.+..+ ...+..++..+.+.+||++|++.+..++..+++++|++++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            579999999999999999999999999999899887555 4567788899999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |||+++++||+.+..|+..+.+.. ..++|+++++||+|+.                                       
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~---------------------------------------  122 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM---------------------------------------  122 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS---------------------------------------
T ss_pred             ecccccchhhhccchhhHHHHhhccccCccEEEEecccchh---------------------------------------
Confidence            999999999999999999987764 4689999999999997                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCC-CHHHHHHHHHHHHHhc
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANI-NIEKAFIELATAIYDK  224 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~~  224 (253)
                             ..+.     +..++++++++++++++++|||+++. ||+++|..|++.+.++
T Consensus       123 -------~~~~-----v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l~~~i~~~  169 (169)
T d1x1ra1         123 -------HLRK-----VTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ  169 (169)
T ss_dssp             -------TTCC-----SCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHHC
T ss_pred             -------hhce-----eehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHHHHHHHhC
Confidence                   4444     67788999999999999999999886 9999999999988763

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=224.86  Aligned_cols=169  Identities=48%  Similarity=0.874  Sum_probs=149.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      +.+||+|+|++|||||||++++.++.+.+.+.++.+.+.........+..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            46899999999999999999999999998888888888887888888889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      |||++++.+|+.+..|+..+......++|+++++||+|+.                                        
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~----------------------------------------  121 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE----------------------------------------  121 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG----------------------------------------
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchh----------------------------------------
Confidence            9999999999999999999988877899999999999986                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccCC
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTSG  227 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  227 (253)
                            ..+.     ...++..++++.+++++++|||++|.||+++|..|++.+.++.+.
T Consensus       122 ------~~~~-----~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~~i~~~~~~  170 (173)
T d2a5ja1         122 ------SRRD-----VKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ  170 (173)
T ss_dssp             ------GGCC-----SCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred             ------hhhh-----hHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHc
Confidence                  2222     455678999999999999999999999999999999998876643

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-36  Score=228.18  Aligned_cols=163  Identities=29%  Similarity=0.569  Sum_probs=143.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+|+|++|||||||+++|..+.+...+.||++.++....+..++..+.+.+|||+|++.+..++..++++++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999999999999999999988898899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ||+++++||+.+..|+..+.+.. .++|+++||||+|+..                                        
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~----------------------------------------  121 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKD----------------------------------------  121 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSC----------------------------------------
T ss_pred             cccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhh----------------------------------------
Confidence            99999999999999999988876 6899999999999862                                        


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                            ..       ...+...+++.+++++++|||++|.||+++|..|++.++...
T Consensus       122 ------~~-------~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~  165 (170)
T d1i2ma_         122 ------RK-------VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP  165 (170)
T ss_dssp             ------SC-------CTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHHTCT
T ss_pred             ------hh-------hhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHccCC
Confidence                  21       123456788888999999999999999999999999887543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-35  Score=222.27  Aligned_cols=163  Identities=37%  Similarity=0.679  Sum_probs=151.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ..+||+|+|++|||||||+++|..+.+...+.++.+.++.............+.+||++|++.+..++..+++.++++|+
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            46899999999999999999999999999999999988888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      |||++++++|+.+..|+..+......+.|+++|+||+|+.                                        
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~----------------------------------------  122 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT----------------------------------------  122 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG----------------------------------------
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhc----------------------------------------
Confidence            9999999999999999999988888899999999999986                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                            ..+.     +..++++++++.+++++++|||++|.||+++|..|++.+
T Consensus       123 ------~~~~-----v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         123 ------DVRE-----VMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             ------GGCC-----SCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             ------cccc-----hhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence                  3333     666788999999999999999999999999999999876

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=222.63  Aligned_cols=162  Identities=44%  Similarity=0.738  Sum_probs=149.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+|+|++|||||||+++|.++.+...+.++.+.++.......++..+.+.+||++|++.+...+..++.+++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            59999999999999999999999999999999998888888888888999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      |++++.++..+..|+..+......++|+++||||+|+.                                          
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~------------------------------------------  118 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA------------------------------------------  118 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG------------------------------------------
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchh------------------------------------------
Confidence            99999999999999999988877899999999999986                                          


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                          +...     +..+++.++++.+++++++|||++|.||+++|..|++.+.
T Consensus       119 ----~~~~-----~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         119 ----DKRQ-----VSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP  162 (164)
T ss_dssp             ----GGCC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHSC
T ss_pred             ----hhhh-----hhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHhhC
Confidence                2233     5567889999999999999999999999999999998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=223.71  Aligned_cols=164  Identities=21%  Similarity=0.358  Sum_probs=131.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+|+|++|||||||+++|.+..+... .++.+..+ ...+.+++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC----------CEEE-EEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCCc-CCeeeeee-cceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            37999999999999999999998766544 44544444 46678899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||++++.+|+.+..|+..+..... .++|+++||||+|+.                                        
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~----------------------------------------  118 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV----------------------------------------  118 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCG----------------------------------------
T ss_pred             ccccccccccccccccchhhcccccccceEEEeecccchh----------------------------------------
Confidence            999999999999999999987653 678999999999987                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                            ..+.     +...+++++++.+++++++|||++|.||+++|..|++.+..++
T Consensus       119 ------~~~~-----v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~~i~~~~  165 (168)
T d2gjsa1         119 ------RSRE-----VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRR  165 (168)
T ss_dssp             ------GGCC-----SCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             ------hhcc-----hhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHh
Confidence                  2233     5667889999999999999999999999999999999887664

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-35  Score=224.55  Aligned_cols=176  Identities=22%  Similarity=0.402  Sum_probs=145.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+|+|++|||||||+++|..+.+...+.||++.. .......++..+.+.+||++|+++|..++..+++++|++|+|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-cceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            5899999999999999999999999999999998844 445566788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ||+++++||+.+..|..........++|+++++||+|+...+..                                ..++
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~--------------------------------~~~~  129 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPST--------------------------------IEKL  129 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHH--------------------------------HHHH
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchh--------------------------------hhhh
Confidence            99999999999986555555555578999999999999732110                                0000


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                      ..  .....     +..++++++++.++ +++++|||++|.||+++|+.+++.+.+.
T Consensus       130 ~~--~~~~~-----v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         130 AK--NKQKP-----ITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             HT--TTCCC-----CCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHHTSC
T ss_pred             hh--ccccc-----ccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHhcC
Confidence            00  01222     67788899999975 8999999999999999999999887653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=224.58  Aligned_cols=164  Identities=28%  Similarity=0.465  Sum_probs=144.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+|+|++|||||||+++|..+.+...+.||++..+. ....+++..+.+.+||++|.+.+...+..+++++|++|+|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccc-cceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            589999999999999999999999999999999986554 4567888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc--ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHA--NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      ||+++++++..+..|+..+.+..  ..++|+++||||+|+.                                       
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~---------------------------------------  121 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES---------------------------------------  121 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG---------------------------------------
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeeccccc---------------------------------------
Confidence            99999999999999998887654  3679999999999986                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                             ..+.     +..++++++++.+++++++|||++|.||+++|+.|++.+.++
T Consensus       122 -------~~~~-----v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~~~~~  167 (171)
T d2erxa1         122 -------PSRE-----VQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR  167 (171)
T ss_dssp             -------GGCC-----SCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred             -------cccc-----ccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence                   3333     666788999999999999999999999999999999866543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-35  Score=222.81  Aligned_cols=169  Identities=44%  Similarity=0.808  Sum_probs=149.8

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      +++.+||+|+|++|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++.|..++..++++++++
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            47889999999999999999999999999998888888888888888999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      |+|||++++.||..+..|+..+.++...++|+++|+||+|+.                                      
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~--------------------------------------  122 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR--------------------------------------  122 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG--------------------------------------
T ss_pred             EEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeeccc--------------------------------------
Confidence            999999999999999999999999888889999999999986                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                              +.+.     ...+....+.+.++.++++|||++|.|++++|..|++.+.+..
T Consensus       123 --------~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~~~~  169 (175)
T d2f9la1         123 --------HLRA-----VPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV  169 (175)
T ss_dssp             --------GGCC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             --------cccc-----chHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence                    2222     3445567788888999999999999999999999999876544

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-35  Score=226.59  Aligned_cols=170  Identities=52%  Similarity=0.905  Sum_probs=156.8

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      .+++.+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+.+..+.+.+|||+|++.+..++..+++++++
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            46889999999999999999999999999999999999999888889999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      +|+|||+++++++..+..|...+.+....++|+++++||.|+.                                     
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~-------------------------------------  124 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK-------------------------------------  124 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-------------------------------------
T ss_pred             EEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccc-------------------------------------
Confidence            9999999999999999999999988777899999999999987                                     


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                               ....     +..++...+++..+++++++||++|.||+++|+.|++.+....
T Consensus       125 ---------~~~~-----~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~~i~~~~  171 (194)
T d2bcgy1         125 ---------DKRV-----VEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM  171 (194)
T ss_dssp             ---------TTCC-----SCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             ---------cccc-----hhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHHHHHHHh
Confidence                     3333     5667788899999999999999999999999999999887755

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-35  Score=221.95  Aligned_cols=175  Identities=26%  Similarity=0.462  Sum_probs=145.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      ..||+|+|++|||||||+++|..+.+...+.||++ +........++..+.+.+||++|++.|..++..+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            57999999999999999999999999999899987 44456677888999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ||+++++||+.+..|...+......++|++|++||+|+...+..                                ..+.
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~--------------------------------~~~~  128 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHT--------------------------------RREL  128 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHH--------------------------------HHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhH--------------------------------HHHH
Confidence            99999999999887665555555578999999999999732111                                0000


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                      ...  ..+.     +..++++++++.++ +++++|||++|.||+++|+.+++.+++
T Consensus       129 ~~~--~~~~-----v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         129 AKM--KQEP-----VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             HHT--TCCC-----CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             HHh--hccc-----ccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhC
Confidence            000  1122     66778899999998 699999999999999999999998763

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-35  Score=221.32  Aligned_cols=166  Identities=32%  Similarity=0.557  Sum_probs=144.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ..+||+|+|++|||||||+++|..+.+...+.|+.+ +.....+.+++..+.+.+||++|.+++...+..+++.+|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            358999999999999999999999999999888887 4555777788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |||++++.||+.+..|+..+.+.. ....|+++|+||+|+.                                       
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~---------------------------------------  123 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD---------------------------------------  123 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCT---------------------------------------
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchh---------------------------------------
Confidence            999999999999999999887664 3679999999999986                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                             ..+.     +..++++++++.+++++++|||++|.||+++|..|++.+.+.+
T Consensus       124 -------~~~~-----v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~k~~  170 (171)
T d2erya1         124 -------HQRQ-----VTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQ  170 (171)
T ss_dssp             -------TSCS-----SCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             -------hhcc-----chHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHHHHHHHhh
Confidence                   3343     6667889999999999999999999999999999999986654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-35  Score=220.36  Aligned_cols=164  Identities=29%  Similarity=0.465  Sum_probs=143.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+|+|++|||||||+++|..+.+...+.||++.++... +..++..+.+.+||++|.+.+. .+..++++++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~-~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc-ccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            58999999999999999999999999999999999887644 4567888999999999998774 566789999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||++++.++..+..|+..+..... .+.|+++||||+|+.                                        
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~----------------------------------------  119 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD----------------------------------------  119 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG----------------------------------------
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhh----------------------------------------
Confidence            999999999999998877655443 689999999999996                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCC-HHHHHHHHHHHHHhcc
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANIN-IEKAFIELATAIYDKT  225 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~~~~~  225 (253)
                            ..+.     +..++++++++++++++++|||++|.| |+++|..|++.+.+++
T Consensus       120 ------~~r~-----V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l~~~i~~~r  167 (168)
T d2atva1         120 ------HSRQ-----VSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR  167 (168)
T ss_dssp             ------GGCC-----SCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             ------hhcc-----CcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHHHHHHHHhc
Confidence                  3333     677889999999999999999999985 9999999999987754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-35  Score=220.50  Aligned_cols=165  Identities=38%  Similarity=0.669  Sum_probs=151.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ..+||+|+|++|||||||+++|..+.+...+.++.+.++....+......+.+.+||++|++.+..++..++++++++|+
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            35799999999999999999999999999999999999888888888899999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      +||++++++++.+..|...+.+....++|+++++||+|+.                                        
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~----------------------------------------  124 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA----------------------------------------  124 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG----------------------------------------
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeeccccccc----------------------------------------
Confidence            9999999999999999999988777899999999999987                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                            ..+.     +..+.++++++.+++++++|||++|.||+++|..|++.+.+
T Consensus       125 ------~~~~-----v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         125 ------NKRA-----VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             ------GGCC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSCC
T ss_pred             ------cccc-----ccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHHHHhh
Confidence                  3333     66778899999999999999999999999999999887654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.4e-35  Score=219.75  Aligned_cols=166  Identities=34%  Similarity=0.657  Sum_probs=151.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+|+|++|||||||+++|..+.+...+.++.+.++....+...+..+.+.+||++|++.+..++..++.++|++|+|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            68999999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ||++++.+++.+..|+..+........|+++++||+|+....                                      
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~--------------------------------------  124 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG--------------------------------------  124 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSS--------------------------------------
T ss_pred             EeCCcccchhhhhhhhhhhccccccccceeeeeccccccccc--------------------------------------
Confidence            999999999999999998888777889999999999986221                                      


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                           ..+.     +..++++++++.++++++++||++|.||+++|..|++.+.
T Consensus       125 -----~~~~-----v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~~i~  168 (170)
T d1ek0a_         125 -----GERK-----VAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             -----CCCC-----SCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred             -----chhh-----hhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHhc
Confidence                 1122     6777889999999999999999999999999999987653

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-35  Score=218.65  Aligned_cols=163  Identities=31%  Similarity=0.550  Sum_probs=145.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ..+||+|+|++|||||||+++|.++.+...+.++++ +.......+++..+.+.+||++|++.+..++..++++++++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            368999999999999999999999999999889887 4555677788899999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |||++++.+|..+..|+..+..... .++|+++||||+|+.                                       
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~---------------------------------------  121 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE---------------------------------------  121 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG---------------------------------------
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchh---------------------------------------
Confidence            9999999999999999999877543 679999999999987                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                             ..+.     +...+++.+++.+++++++|||++|.||+++|..|++.+.
T Consensus       122 -------~~~~-----~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         122 -------SERE-----VSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             -------GGCC-----SCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             -------hccc-----chHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHHHHHc
Confidence                   2233     5567789999999999999999999999999999998764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-34  Score=216.81  Aligned_cols=166  Identities=54%  Similarity=0.943  Sum_probs=142.6

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc-ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT-FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMG   84 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (253)
                      |+..+||+|+|++|||||||+++|..+.+... +.++.+.++....+...+..+.+.+|||+|++.+..++..+++++|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            67899999999999999999999999887544 45667888888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          85 IMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      +++|||++++.++..+..|+..+........|+++++||.|+.                                     
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~-------------------------------------  125 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA-------------------------------------  125 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT-------------------------------------
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechh-------------------------------------
Confidence            9999999999999999999998888777889999999999987                                     


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                               ....     +..+++.++++.++++++++||++|.||+++|+.|++.+.
T Consensus       126 ---------~~~~-----v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         126 ---------HERV-----VKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             ---------SCCC-----SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ---------hccc-----ccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence                     3333     6667889999999999999999999999999999998875

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=225.89  Aligned_cols=169  Identities=42%  Similarity=0.808  Sum_probs=149.4

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCC----------eEEEEEEEeCCCcccccccc
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKG----------KKIKLQIWDTAGQERFHTIT   75 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~Dt~G~~~~~~~~   75 (253)
                      +++.+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++          ..+.+.+|||+|+++|..++
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            67889999999999999999999999999998888888887776665543          34689999999999999999


Q ss_pred             hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621          76 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN  154 (253)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (253)
                      ..++++++++|+|||++++.+++.+..|+..+..+. ....|+++|+||.|+.                           
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~---------------------------  134 (186)
T d2f7sa1          82 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP---------------------------  134 (186)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG---------------------------
T ss_pred             HHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccch---------------------------
Confidence            999999999999999999999999999998876654 3678999999999997                           


Q ss_pred             ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                         ..++     +..+++.++++++++++++|||++|.||+++|+.|++.+.+++
T Consensus       135 -------------------~~~~-----v~~~e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~~k~  181 (186)
T d2f7sa1         135 -------------------DQRE-----VNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM  181 (186)
T ss_dssp             -------------------GGCC-----SCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             -------------------hhhc-----chHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence                               3333     6677889999999999999999999999999999999987764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-34  Score=215.29  Aligned_cols=164  Identities=58%  Similarity=1.034  Sum_probs=145.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..++++++++|+|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ||++++.+++.+..|+..+........|++++++|.|+.                                         
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~-----------------------------------------  120 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-----------------------------------------  120 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-----------------------------------------
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhh-----------------------------------------
Confidence            999999999999999999888887889999999999975                                         


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                            .+.     ...++.+++++.+++++++|||++|.||+++|+.|++.+.++
T Consensus       121 ------~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         121 ------TRV-----VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             ------TCC-----SCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             ------hhh-----hhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHHHHhc
Confidence                  222     456678999999999999999999999999999999998775

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-34  Score=216.02  Aligned_cols=162  Identities=31%  Similarity=0.567  Sum_probs=143.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+|+|++|||||||+++|..+.+...+.++++..+ ...+..++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            57999999999999999999999999999999988555 45667888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||++++.||+.+..|+..+.+.. .+++|+++||||+|+.                                        
T Consensus        82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~----------------------------------------  121 (167)
T d1c1ya_          82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE----------------------------------------  121 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG----------------------------------------
T ss_pred             eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcc----------------------------------------
Confidence            99999999999999999987754 3689999999999997                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHh-CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREY-GVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                            ....     ...++...+++++ ++++++|||++|.||+++|..|++.+.
T Consensus       122 ------~~~~-----~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         122 ------DERV-----VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             ------GGCC-----SCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             ------cccc-----cchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence                  2222     5556778888875 689999999999999999999998875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-34  Score=214.41  Aligned_cols=162  Identities=31%  Similarity=0.570  Sum_probs=145.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+|+|++|||||||+++|.++.+...+.++.+.++... +...+..+.+.+||++|.+.+...+..+++.++++++|
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            48999999999999999999999999999999998776644 55778889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcc-cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHAN-EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||++++.+|+.+..|+..+.+... .++|+++|+||+|+.                                        
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----------------------------------------  121 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA----------------------------------------  121 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCS----------------------------------------
T ss_pred             ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccc----------------------------------------
Confidence            999999999999999999987653 579999999999985                                        


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                             .+.     +..++++++++.+++++++|||++|.||+++|..|++.+.+
T Consensus       122 -------~~~-----~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         122 -------ART-----VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             -------CCC-----SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             -------ccc-----ccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence                   222     55667899999999999999999999999999999998864

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-34  Score=216.63  Aligned_cols=177  Identities=26%  Similarity=0.493  Sum_probs=145.3

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      +...+||+|+|++|||||||+++|..+.+...+.+|++ +.....+..++..+.+.+||++|++.+..++..+++++|++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            45679999999999999999999999999999999987 44556677888999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHH-HHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          86 MLVYDITNEKSFDNILK-WLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      |+|||+++++||+++.. |...+..+ ..++|+++|+||+|+..++..                                
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~--------------------------------  127 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDT--------------------------------  127 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHH--------------------------------
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhh--------------------------------
Confidence            99999999999999976 55555444 478999999999998733211                                


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                      .++....  ....     ....++..+++.++ ++|++|||++|.||+++|+.|++.++.
T Consensus       128 ~~~~~~~--~~~~-----~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         128 IEKLKEK--KLTP-----ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             HHHHHHT--TCCC-----CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             hhhhhhc--cccc-----hhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHcC
Confidence            0000000  1111     45567889999988 899999999999999999999998863

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=213.90  Aligned_cols=167  Identities=39%  Similarity=0.715  Sum_probs=132.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeC-CeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLK-GKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      .+||+|+|++|||||||+++|.++.+...+.++.+.+......... .....+.+|||+|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            6899999999999999999999999998888888776665555443 455779999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcc----cccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHAN----EDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILK  163 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (253)
                      |||++++.+|+.+..|+.++..+..    .++|+++++||+|+...+..                               
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------------------------------  130 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-------------------------------  130 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC-------------------------------
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcc-------------------------------
Confidence            9999999999999999999877542    57899999999998732111                               


Q ss_pred             HHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         164 WLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                         +...+++++++.++ +++++|||++|.||+++|++|++.++++.
T Consensus       131 -------------------v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         131 -------------------VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN  174 (175)
T ss_dssp             -------------------SCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             -------------------hhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhcc
Confidence                               45567889999987 89999999999999999999999887764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-33  Score=212.50  Aligned_cols=167  Identities=43%  Similarity=0.780  Sum_probs=151.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      -.++||+|+|++|||||||+++|.++.+...+.++.+..+....+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            35799999999999999999999999999998998888888888889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +|||++++.++..+..|+.++.+.. ....|+++++||.|..                                      
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~--------------------------------------  126 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--------------------------------------  126 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--------------------------------------
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc--------------------------------------
Confidence            9999999999999999999987754 3678999999999974                                      


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                               .+.     +...+.+++++.++++++++||++|.||+++|++|++.+.+..
T Consensus       127 ---------~~~-----v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~~~l~~~p  172 (177)
T d1x3sa1         127 ---------NRE-----VDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP  172 (177)
T ss_dssp             ---------SCC-----SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred             ---------ccc-----ccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHHHccCc
Confidence                     233     6677889999999999999999999999999999999988653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.2e-33  Score=211.20  Aligned_cols=176  Identities=20%  Similarity=0.426  Sum_probs=144.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+|+|++|||||||+++|..+.++..+.|+++ +.......+++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            57999999999999999999999999999999886 44445677788899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      ||+++++||+.+..|..........++|+++||||+|+......                            .    ...
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~----------------------------~----~~~  128 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVST----------------------------L----VEL  128 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHH----------------------------H----HHH
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchh----------------------------h----HHH
Confidence            99999999999887655544444478999999999998622110                            0    000


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCC-CHHHHHHHHHHHHHhc
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANI-NIEKAFIELATAIYDK  224 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~-gi~~l~~~l~~~~~~~  224 (253)
                        .....+.     +..++..+++++++ .+|+||||++|. |++++|+.+++.++.+
T Consensus       129 --~~~~~~~-----V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         129 --SNHRQTP-----VSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             --HTTTCCC-----CCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred             --hhhhcCc-----chHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHHHhcC
Confidence              0001222     67788899999988 699999999998 5999999999988764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-33  Score=211.95  Aligned_cols=165  Identities=21%  Similarity=0.349  Sum_probs=138.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCC-CcccCccceeeEEEEEeeCCeEEEEEEEeCCC---cccccccchhhhcCcc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFN-TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAG---QERFHTITTSYYRGAM   83 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G---~~~~~~~~~~~~~~~d   83 (253)
                      ..+||+|+|++|||||||+++|.+..+. ....++.+.+.....+.+++..+.+.+||+++   +++|  ++..+++++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            3689999999999999999999987654 33456677788888888999999999999765   4444  5667889999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      ++|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.                                   
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~-----------------------------------  124 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-----------------------------------  124 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG-----------------------------------
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEecccccc-----------------------------------
Confidence            9999999999999999999999887653 3689999999999987                                   


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                 ..+.     +..++++++++.+++++++|||++|.||+++|..|++.+..++
T Consensus       125 -----------~~~~-----v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         125 -----------RCRE-----VSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             -----------GGCC-----SCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             -----------cccc-----ccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHHHHHHHHHcc
Confidence                       2233     5667788999999999999999999999999999999987654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-33  Score=209.31  Aligned_cols=166  Identities=36%  Similarity=0.662  Sum_probs=145.5

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      ++..+||+|+|++|||||||+++|..+.+...+.++.+..+........+..+.+.+||++|..++...+..++..++++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            45688999999999999999999999999999999999888888888888999999999999999988999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhc----ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEHA----NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI  161 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      +++||++++.+++.+..|+.++....    ..++|+++||||+|+.                                  
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~----------------------------------  128 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS----------------------------------  128 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS----------------------------------
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh----------------------------------
Confidence            99999999999999999999887654    2579999999999985                                  


Q ss_pred             HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                  + +.     +..+++++++++.+ +++++|||++|.||+++|+.|++.++.
T Consensus       129 ------------~-~~-----v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         129 ------------E-RQ-----VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             ------------S-CS-----SCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ------------h-cc-----CcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Confidence                        2 22     66678889998875 899999999999999999999998864

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-32  Score=206.66  Aligned_cols=158  Identities=39%  Similarity=0.744  Sum_probs=141.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc-cchhhhcCccEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT-ITTSYYRGAMGIML   87 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~il   87 (253)
                      .+||+|+|++|||||||+++|..+.+...+.++.+..+......+......+.+||++|...+.. .+..+++++|++|+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            68999999999999999999999999999999999888888888999999999999999877654 46778999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLR  166 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (253)
                      |||++++++|+.+..|+.++.++. ..++|++|||||+|+.                                       
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~---------------------------------------  122 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR---------------------------------------  122 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG---------------------------------------
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccch---------------------------------------
Confidence            999999999999999999998765 3689999999999987                                       


Q ss_pred             hhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccC---CCCHHHHHHHH
Q psy9621         167 NIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKA---NINIEKAFIEL  217 (253)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~l~~~l  217 (253)
                             ..+.     +..++++++++.+++++++|||++   +.||+++|..|
T Consensus       123 -------~~~~-----v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         123 -------SAIQ-----VPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             -------GGCC-----SCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred             -------hccc-----hhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHHHHh
Confidence                   3333     667788999999999999999987   55999999886

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.1e-32  Score=208.79  Aligned_cols=165  Identities=36%  Similarity=0.644  Sum_probs=146.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+|+|.+|||||||+++|.++.+...+.+|.+.++........+..+.+.+||++|+..+...+..++..++++|++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            58999999999999999999999999999999999999988898899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc----ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHA----NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      ||++++.++..+..|+..+..+.    ..++|+++|+||+|+.                                     
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~-------------------------------------  124 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-------------------------------------  124 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-------------------------------------
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccc-------------------------------------
Confidence            99999999999999999887764    2578999999999985                                     


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHH-hCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIARE-YGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                               . +.     +..++..+++.. .++++++|||++|.||+++|+.|++.+.+++
T Consensus       125 ---------~-~~-----~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~~~  171 (184)
T d1vg8a_         125 ---------N-RQ-----VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE  171 (184)
T ss_dssp             ---------C-CC-----SCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             ---------c-cc-----hhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHHHhcc
Confidence                     2 22     444555666654 4699999999999999999999999887754

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.6e-31  Score=198.61  Aligned_cols=162  Identities=18%  Similarity=0.320  Sum_probs=134.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      +.+||+|+|++|||||||+++|.++.+... .++.+..+ ...+.+++..+.+.+|||+|+..+     .+++++|++|+
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccceeE-EEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            479999999999999999999999988654 55555454 567788999999999999998754     37899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc---ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          88 VYDITNEKSFDNILKWLRNIDEHA---NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      |||++++.||+.+..|+..+....   ...+|+++|+||.|+...                                   
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~-----------------------------------  121 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS-----------------------------------  121 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSS-----------------------------------
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchh-----------------------------------
Confidence            999999999999999998886653   367899999999987521                                   


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHH-hCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIARE-YGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                               ..+.     +...+++.++++ ++++|++|||++|.||+++|..+++.+...+
T Consensus       122 ---------~~~~-----v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~  169 (175)
T d2bmja1         122 ---------SPRV-----VGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLR  169 (175)
T ss_dssp             ---------SCCC-----SCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             ---------hhcc-----hhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHHHHHhh
Confidence                     1222     556677788655 4689999999999999999999999887654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=4.6e-31  Score=197.62  Aligned_cols=160  Identities=21%  Similarity=0.371  Sum_probs=130.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+|+|++|||||||+++|..+.+...+.||++.++..  +..  .++.+.+||+||++.+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--eee--eeEEEEEeeccccccccccccccccccchhhcc
Confidence            6899999999999999999999999999889999866643  333  357799999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||++++.++.....|+..+.+.. ..++|++||+||.|+......                                   
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~-----------------------------------  122 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE-----------------------------------  122 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH-----------------------------------
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhH-----------------------------------
Confidence            99999999999998888775543 478999999999998632111                                   


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                              .+     +........++..+++++++||++|.|++++|++|++.
T Consensus       123 --------~~-----i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~  162 (164)
T d1zd9a1         123 --------KE-----LIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH  162 (164)
T ss_dssp             --------HH-----HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             --------HH-----HHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHc
Confidence                    00     12222233344456789999999999999999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=7.8e-31  Score=199.63  Aligned_cols=169  Identities=21%  Similarity=0.337  Sum_probs=127.5

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      +.....+||+++|++|||||||+++|..+.+.. ..||.+.....  ...  ..+.+.+||++|++.+..++..++..++
T Consensus        12 ~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (182)
T d1moza_          12 WGSNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVET--LSY--KNLKLNVWDLGGQTSIRPYWRCYYADTA   86 (182)
T ss_dssp             TTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCEEE--EEE--TTEEEEEEEEC----CCTTGGGTTTTEE
T ss_pred             hCCCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEEEE--Eee--CCEEEEEEecccccccchhHHhhhccce
Confidence            356778999999999999999999998876654 35676655432  222  3577999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHh-cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEH-ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      ++++|||++++.++.....|+..+... ...+.|++|++||+|+......                              
T Consensus        87 ~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~------------------------------  136 (182)
T d1moza_          87 AVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSA------------------------------  136 (182)
T ss_dssp             EEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCH------------------------------
T ss_pred             eEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCH------------------------------
Confidence            999999999999999998888776554 3467999999999998622110                              


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                   .+     +........+...++++++|||++|+||+++|++|.+.+.+++
T Consensus       137 -------------~~-----i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~~~  181 (182)
T d1moza_         137 -------------SE-----VSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             -------------HH-----HHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             -------------HH-----HHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence                         00     1111122223344678999999999999999999999988765

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=2.3e-30  Score=195.88  Aligned_cols=164  Identities=20%  Similarity=0.284  Sum_probs=126.7

Q ss_pred             cccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCcc
Q psy9621           4 KTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAM   83 (253)
Q Consensus         4 ~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (253)
                      .+.+..+||+++|++|||||||+++|.++.+... .++.+.+.  ..+..  ..+.+.+||++|++.+...+..+++.+|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~~~--~~i~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNI--KSVQS--QGFKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETTEEE--EEEEE--TTEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeeeeeE--EEecc--CCeeEeEeeccccccchhHHHHHhhccc
Confidence            4667789999999999999999999998877544 45555443  33333  3478999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          84 GIMLVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      ++|+|||++++.++..+..|+..+.... ..++|+++++||+|+..+...                              
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~------------------------------  135 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA------------------------------  135 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH------------------------------
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccH------------------------------
Confidence            9999999999999999998887776554 367999999999999632110                              


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                    ..    +........++..++++++|||++|+|++++|++|++.
T Consensus       136 --------------~~----~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         136 --------------SE----IAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             --------------HH----HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             --------------HH----HHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhc
Confidence                          00    11111122233345789999999999999999999874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.96  E-value=1.8e-29  Score=189.00  Aligned_cols=163  Identities=21%  Similarity=0.348  Sum_probs=123.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+|+|++|||||||+++|.+..+. .+.||.+....  .+..  ..+.+.+||++|++.+...+..+++.+++++++
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNIK--TLEH--RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEEE--EEEE--TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeeee--eccc--cccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            589999999999999999999987664 45677764433  3333  457799999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHH-hcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      ||+++..++.....++..... ....++|++||+||+|+......                                   
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-----------------------------------  121 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC-----------------------------------  121 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-----------------------------------
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH-----------------------------------
Confidence            999999999888876665544 33478999999999998632111                                   


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                               ..    ..........+..++++++|||++|+||+++|++|...+..+
T Consensus       122 ---------~~----~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~~r  165 (165)
T d1ksha_         122 ---------NA----IQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR  165 (165)
T ss_dssp             ---------HH----HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             ---------HH----HHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHcC
Confidence                     00    000001111223346899999999999999999999887653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=6.4e-30  Score=192.97  Aligned_cols=163  Identities=21%  Similarity=0.367  Sum_probs=125.5

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      ....+||+++|++|||||||+++|.++.+... .+|.+..+..  .  ....+.+.+||+||+..+...+..+++.++++
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~~~~--~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   83 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVET--V--TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL   83 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEEEEE--E--EETTEEEEEEEESCCGGGHHHHGGGTTTCCEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeeeEEE--e--eccceeeEEecCCCcchhhhHHHhhhcccceE
Confidence            45679999999999999999999998776544 4555544432  2  22457899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHh-cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHH
Q psy9621          86 MLVYDITNEKSFDNILKWLRNIDEH-ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKW  164 (253)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (253)
                      |+|||++++.++..+..|+..+.+. ...+.|+++++||+|+..+...                                
T Consensus        84 i~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~--------------------------------  131 (173)
T d1e0sa_          84 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP--------------------------------  131 (173)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH--------------------------------
T ss_pred             EEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccH--------------------------------
Confidence            9999999999999998887776553 3468999999999998622110                                


Q ss_pred             HHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         165 LRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                                 .+     +......+.++..++.+++|||++|+||+++|++|...+
T Consensus       132 -----------~~-----i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         132 -----------HE-----IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             -----------HH-----HHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             -----------HH-----HHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence                       00     112222233344467899999999999999999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=3.6e-28  Score=180.45  Aligned_cols=158  Identities=16%  Similarity=0.282  Sum_probs=124.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEE
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVY   89 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~   89 (253)
                      +||+|+|++|||||||+++|.++.+...+......     ....+...+.+.+||++|...+...+..+++.+++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            69999999999999999999988876654443321     1223456678999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhh
Q psy9621          90 DITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNI  168 (253)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (253)
                      |++++.++..+..|+.++.... ....|+++++||.|+......                                    
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~------------------------------------  119 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA------------------------------------  119 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH------------------------------------
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccH------------------------------------
Confidence            9999999999988887776543 367899999999998622110                                    


Q ss_pred             hhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         169 DEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                             .+     +.......+++..+++++++||++|+||+++|++|.+.
T Consensus       120 -------~~-----i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~  159 (160)
T d1r8sa_         120 -------AE-----ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ  159 (160)
T ss_dssp             -------HH-----HHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             -------HH-----HHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhc
Confidence                   01     23333444555667899999999999999999999875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.92  E-value=3.8e-25  Score=166.86  Aligned_cols=162  Identities=17%  Similarity=0.281  Sum_probs=117.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      .+.+||+|+|.+|||||||++++.++.+... .++.+....  ....  ....+.+||+++.+........++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~~~~--~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVE--EIVI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCSSCE--EEEE--TTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccceeEE--EEee--cceEEEEeccccccccccchhhhhccceeee
Confidence            4568999999999999999999999877654 333333222  2222  3467999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +++|.++..++.....+........ ..+.|+++|+||+|+......                                 
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---------------------------------  134 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV---------------------------------  134 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH---------------------------------
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcH---------------------------------
Confidence            9999999999988876655554433 378999999999998622110                                 


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                                .+     +........+...+++++++||++|+|++++|++|.+.+
T Consensus       135 ----------~~-----i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         135 ----------AE-----ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             ----------HH-----HHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             ----------HH-----HHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence                      00     111111122233457899999999999999999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.92  E-value=2.7e-24  Score=160.46  Aligned_cols=163  Identities=21%  Similarity=0.345  Sum_probs=123.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+++|++|||||||+++|.++.+... .++.+....  ...  .+.+.+.+||.+|...+..........+++++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVE--TVT--YKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEEE--EEE--ETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccceeee--eec--cCceEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            58999999999999999999999887654 445443222  222  2356799999999999998899999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHH-HhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHh
Q psy9621          89 YDITNEKSFDNILKWLRNID-EHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRN  167 (253)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~-~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (253)
                      +|+.+..++.....+..... .......|+++++||.|+......                                   
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~-----------------------------------  124 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS-----------------------------------  124 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-----------------------------------
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccH-----------------------------------
Confidence            99999888888776554443 334467999999999998622100                                   


Q ss_pred             hhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         168 IDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                              .+     +.......++...+++++++||++|.||+++|++|.+.+..+
T Consensus       125 --------~~-----i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~~k  168 (169)
T d1upta_         125 --------SE-----MANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR  168 (169)
T ss_dssp             --------HH-----HHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             --------HH-----HHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence                    00     222223344555568999999999999999999999988665

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=1.9e-25  Score=170.88  Aligned_cols=113  Identities=16%  Similarity=0.215  Sum_probs=90.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ..+||++||+.|||||||+++|....++.     .++.    +..+......+.+||++|++.+..++..+++.++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t-----~~~~----~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAG-----TGIV----ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCC-----CSEE----EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCC-----ccEE----EEEEEeeeeeeeeeccccccccccchhhcccCCceeee
Confidence            36899999999999999999998765543     3321    22334456789999999999999999999999999999


Q ss_pred             EEeCCChhhH-----------HHHHHHHHHHHHhcccccceeEEeeeeccccc
Q psy9621          88 VYDITNEKSF-----------DNILKWLRNIDEHANEDVEKMILGKTKDTAGQ  129 (253)
Q Consensus        88 v~d~~~~~s~-----------~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  129 (253)
                      |||+++..++           +....|...+........|+++++||.|+...
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~  124 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEE  124 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhh
Confidence            9999988765           33345655565555678999999999998644

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=9.1e-25  Score=167.74  Aligned_cols=178  Identities=15%  Similarity=0.117  Sum_probs=128.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIML   87 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~il   87 (253)
                      ..+||+++|+.|||||||+++|..+.+.  +.||+|+++..    +....+.+++||++|++.+...+..+++.++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEEE----EECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEEE----EeccceeeeeccccccccccccccccccccceeeE
Confidence            3689999999999999999999988774  57999976542    33356779999999999999999999999999999


Q ss_pred             EEeCCChh-----------hHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCcc
Q psy9621          88 VYDITNEK-----------SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEK  156 (253)
Q Consensus        88 v~d~~~~~-----------s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (253)
                      +||.++..           .++....|...+......+.|+++++||.|+...+........+....             
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~-------------  141 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEY-------------  141 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTC-------------
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccc-------------
Confidence            99988754           356666787777777668999999999999975543311111100000             


Q ss_pred             chhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH----------HhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         157 SFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR----------EYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                       ....     -.......+..          ...+.+++|||++|.||+++|+.+...+.++.+
T Consensus       142 -----------------~~~~-----~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~nl  199 (200)
T d2bcjq2         142 -----------------DGPQ-----RDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  199 (200)
T ss_dssp             -----------------CSCS-----SCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             -----------------cCCc-----hhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHhc
Confidence                             0000     00111111111          123567899999999999999999988887653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.9e-24  Score=160.50  Aligned_cols=163  Identities=22%  Similarity=0.262  Sum_probs=118.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEe
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYD   90 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   90 (253)
                      ||+++|++|||||||+++|.++.+.. ..|+.+....  .  .......+.+||++|...+......++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSE--E--LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEEE--E--ECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeEE--E--eccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            89999999999999999999987754 4666654332  2  33345668999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc-ccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhh
Q psy9621          91 ITNEKSFDNILKWLRNIDEHA-NEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNID  169 (253)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (253)
                      .++..++.....|........ ..+.|+++++||.|+..+...                          +++..   .+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~--------------------------~~i~~---~~~  127 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSE--------------------------AELRS---ALG  127 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCH--------------------------HHHHH---HHT
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCH--------------------------HHHHH---Hhh
Confidence            999999888887776665543 378999999999998632111                          11110   000


Q ss_pred             hhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHH
Q psy9621         170 EHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELAT  219 (253)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  219 (253)
                      .            ........+....++++++|||++|+|++++|++|.+
T Consensus       128 ~------------~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         128 L------------LNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             C------------SSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             h------------hhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence            0            0001111122233468999999999999999999864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=4.6e-24  Score=161.19  Aligned_cols=154  Identities=13%  Similarity=0.085  Sum_probs=103.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCc-ccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc--------hhhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTT-FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT--------TSYYRG   81 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~~~   81 (253)
                      +|+|+|.+|||||||+++|++...... ..+..............  ...+.+|||||........        ..++..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~   84 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD   84 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeee--eeeeeecccccccccccccchhccccccccccc
Confidence            699999999999999999998654322 11211112222223333  3569999999986543322        345678


Q ss_pred             ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621          82 AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI  161 (253)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      +|++|+|+|++++.+... ..|.+.+.. ...+.|+++|+||+|+.                                  
T Consensus        85 ad~il~v~D~~~~~~~~~-~~i~~~l~~-~~~~~piilv~NK~Dl~----------------------------------  128 (178)
T d1wf3a1          85 VNAVVWVVDLRHPPTPED-ELVARALKP-LVGKVPILLVGNKLDAA----------------------------------  128 (178)
T ss_dssp             CSEEEEEEETTSCCCHHH-HHHHHHHGG-GTTTSCEEEEEECGGGC----------------------------------
T ss_pred             ccceeeeechhhhhcccc-cchhhheec-cccchhhhhhhcccccc----------------------------------
Confidence            999999999988654332 344444443 34678999999999986                                  


Q ss_pred             HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                                  +..+        .....+.+.++ ..++++||++|.|+++|++.|.+.+.
T Consensus       129 ------------~~~~--------~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         129 ------------KYPE--------EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP  170 (178)
T ss_dssp             ------------SSHH--------HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred             ------------cCHH--------HHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhCC
Confidence                        2111        12233344444 57899999999999999999987664

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=7.9e-23  Score=154.58  Aligned_cols=159  Identities=11%  Similarity=0.069  Sum_probs=103.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc----ccc---chhhhcCcc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF----HTI---TTSYYRGAM   83 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~---~~~~~~~~d   83 (253)
                      +|+++|.+|||||||+|+|++........+......... .........+.+|||||....    ...   ....+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeec-eeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            599999999999999999987654433222222222211 222333456899999995321    122   223467899


Q ss_pred             EEEEEEeCCChh--hHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621          84 GIMLVYDITNEK--SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI  161 (253)
Q Consensus        84 ~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      ++++++|+....  .+.....|+...... ..+.|+++|+||+|+..                                 
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~---------------------------------  127 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLE---------------------------------  127 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSC---------------------------------
T ss_pred             hhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhh---------------------------------
Confidence            999999986542  233333444332222 24689999999999861                                 


Q ss_pred             HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                   ...       .....+.....+.++|++||++|+|+++|++.|.+.+...
T Consensus       128 -------------~~~-------~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l~~~  170 (180)
T d1udxa2         128 -------------EEA-------VKALADALAREGLAVLPVSALTGAGLPALKEALHALVRST  170 (180)
T ss_dssp             -------------HHH-------HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             -------------HHH-------HHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence                         111       1223344455678999999999999999999998888653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=4.2e-23  Score=158.50  Aligned_cols=114  Identities=18%  Similarity=0.251  Sum_probs=84.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLV   88 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv   88 (253)
                      .+||+++|++|||||||+++|.   +...+.||+|+...  .+..  +...+.+||++|++.+...+..+++++++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~--~~~~--~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY--DFEI--KNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE--EEEE--TTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEE--EEee--eeeeeeeecccceeeecccccccccccceeEEE
Confidence            6899999999999999999993   55677899986543  3333  457799999999999999999999999999999


Q ss_pred             EeCCChhh----------HHHHHHHHHHHHH-hcccccceeEEeeeeccccc
Q psy9621          89 YDITNEKS----------FDNILKWLRNIDE-HANEDVEKMILGKTKDTAGQ  129 (253)
Q Consensus        89 ~d~~~~~s----------~~~~~~~~~~i~~-~~~~~~p~iiv~nK~D~~~~  129 (253)
                      ||.++..+          ++....++..+.. ....++|+++++||.|+...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~  126 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEE  126 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhh
Confidence            99987533          4444455555433 33478999999999998744

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=5.8e-24  Score=157.89  Aligned_cols=150  Identities=17%  Similarity=0.212  Sum_probs=106.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCc-ccCccceeeEEEEEeeCCeEEEEEEEeCCCccccccc--------chhhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTT-FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTI--------TTSYYR   80 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~   80 (253)
                      +||+++|.+|||||||+++|++...... ..+....+.....+...  ...+.+||++|..+....        ...++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID--GMPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET--TEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeecc--CceeeeccccccccccccchhHHHHHHHHHHH
Confidence            7999999999999999999997654322 22222222222233333  356889999997544322        234578


Q ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhh
Q psy9621          81 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN  160 (253)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (253)
                      .+|++++++|..+..++.....|.+.+.... .+.|+++|+||+|+...                               
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~iilv~NK~Dl~~~-------------------------------  127 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARLP-AKLPITVVRNKADITGE-------------------------------  127 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSC-TTCCEEEEEECHHHHCC-------------------------------
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhcc-cccceeeccchhhhhhh-------------------------------
Confidence            9999999999999888777776655554443 67999999999998621                               


Q ss_pred             HHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         161 ILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                     ...    .        .+..+.+++++||++|.|+++|+++|.+.
T Consensus       128 ---------------~~~----~--------~~~~~~~~~~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         128 ---------------TLG----M--------SEVNGHALIRLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             ---------------CCE----E--------EEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ---------------HHH----H--------HHhCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence                           110    0        01234689999999999999999999875

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.88  E-value=1.1e-22  Score=153.90  Aligned_cols=174  Identities=16%  Similarity=0.187  Sum_probs=114.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIM   86 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (253)
                      .+..||+++|++|||||||+++|.++.+... .++.+.+..  .+...+  ..+..||+.++..+...+..+.+..++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-eccccccee--EEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            4568999999999999999999998877654 345443333  333443  45889999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHH-hcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHH
Q psy9621          87 LVYDITNEKSFDNILKWLRNIDE-HANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWL  165 (253)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (253)
                      +++|+++...+.....+...... ....+.|+++++||.|+.....                          ..++....
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~--------------------------~~~i~~~~  139 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS--------------------------EERLREMF  139 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCC--------------------------HHHHHHHH
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCC--------------------------HHHHHHHH
Confidence            99999999988887765555443 3347899999999999863211                          12222211


Q ss_pred             HhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         166 RNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                      +......          .............++++++|||++|+|++++|++|.+.+
T Consensus       140 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         140 GLYGQTT----------GKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             TCTTTCC----------CSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             hhcccch----------hhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            1110000          000111111223457899999999999999999998653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=4.8e-22  Score=148.95  Aligned_cols=158  Identities=13%  Similarity=0.139  Sum_probs=99.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc---------cccchhhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF---------HTITTSYYRG   81 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~~~   81 (253)
                      +|+|+|++|||||||+++|++...... ....+.+.......+......+.+||++|....         ......++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCccee-cccCceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            699999999999999999987554321 111111211112223334466999999995321         1122345678


Q ss_pred             ccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhH
Q psy9621          82 AMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNI  161 (253)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (253)
                      +|+++++.|.+....... ..++..+..   .++|+++|+||+|+..+                                
T Consensus        81 ad~i~~~~~~~~~~~~~~-~~~~~~l~~---~~~pviiv~NK~Dl~~~--------------------------------  124 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKED-ESLADFLRK---STVDTILVANKAENLRE--------------------------------  124 (171)
T ss_dssp             CSEEEEEEETTTCCCHHH-HHHHHHHHH---HTCCEEEEEESCCSHHH--------------------------------
T ss_pred             CcEEEEeecccccccccc-ccccccccc---ccccccccchhhhhhhh--------------------------------
Confidence            999999999876654433 344444443   36899999999998621                                


Q ss_pred             HHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhccC
Q psy9621         162 LKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDKTS  226 (253)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  226 (253)
                                           ...+...++.+....+++++||++|.|+++|+++|.+.+.++..
T Consensus       125 ---------------------~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~~l~e~~~  168 (171)
T d1mkya1         125 ---------------------FEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGL  168 (171)
T ss_dssp             ---------------------HHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTC
T ss_pred             ---------------------hhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHhCCCCCC
Confidence                                 11122223333333577999999999999999999999877654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=2e-22  Score=149.32  Aligned_cols=147  Identities=18%  Similarity=0.191  Sum_probs=96.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCC-cccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc-----c----ccchhhh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNT-TFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF-----H----TITTSYY   79 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~----~~~~~~~   79 (253)
                      +||+++|.+|||||||+++|++..... ...+..........+...  ...+.+|||||....     .    ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR--GILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET--TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeC--CeeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            699999999999999999998754322 212211111222223333  356899999995321     1    1112235


Q ss_pred             cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchh
Q psy9621          80 RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFD  159 (253)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (253)
                      ..+|++++|+|++++...+...-+ ..    . ...++++++||+|+..                               
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-~~----~-~~~~~i~~~~k~d~~~-------------------------------  121 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-ER----I-KNKRYLVVINKVDVVE-------------------------------  121 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-HH----H-TTSSEEEEEEECSSCC-------------------------------
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-hh----c-ccccceeeeeeccccc-------------------------------
Confidence            789999999999988765543322 11    1 4678999999999861                               


Q ss_pred             hHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh--CCceEEeeccCCCCHHHHHHHHHHH
Q psy9621         160 NILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY--GVRFMETSAKANINIEKAFIELATA  220 (253)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~  220 (253)
                                     ..          ..+++....  +.+++++||++|.|+++|++.|.+.
T Consensus       122 ---------------~~----------~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         122 ---------------KI----------NEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             ---------------CC----------CHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             ---------------hh----------hhHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHhc
Confidence                           11          112233333  3689999999999999999998764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.87  E-value=2.3e-22  Score=151.87  Aligned_cols=165  Identities=15%  Similarity=0.135  Sum_probs=105.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccC-----ccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFIS-----TIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGA   82 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   82 (253)
                      ..+||+++|++|+|||||+++|++.........     ..+.+.......+......+.++|++|+..|.......+..+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~   83 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII   83 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhc
Confidence            468999999999999999999986432221111     111111111111122345688999999999888888889999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccchhhHH
Q psy9621          83 MGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIL  162 (253)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (253)
                      |++++++|+++........ .+..+.   ..++|+++|+||+|+...+..                          .   
T Consensus        84 d~~ilv~d~~~g~~~~~~~-~~~~~~---~~~~p~iiv~NKiD~~~~~~~--------------------------~---  130 (179)
T d1wb1a4          84 DLALIVVDAKEGPKTQTGE-HMLILD---HFNIPIIVVITKSDNAGTEEI--------------------------K---  130 (179)
T ss_dssp             CEEEEEEETTTCSCHHHHH-HHHHHH---HTTCCBCEEEECTTSSCHHHH--------------------------H---
T ss_pred             cccccccccccccchhhhh-hhhhhh---hcCCcceeccccccccCHHHH--------------------------H---
Confidence            9999999998764333222 222222   247999999999998722100                          0   


Q ss_pred             HHHHhhhhhcCCCchhhhhhccchhHHHHHHH----hCCceEEeeccCCCCHHHHHHHHHHHHHhcc
Q psy9621         163 KWLRNIDEHANEDPQVVNSWVCKHRGEAIARE----YGVRFMETSAKANINIEKAFIELATAIYDKT  225 (253)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  225 (253)
                                          ......+.+.+.    .+.+++++||++|+|+++|++.|...+...+
T Consensus       131 --------------------~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~~e  177 (179)
T d1wb1a4         131 --------------------RTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAE  177 (179)
T ss_dssp             --------------------HHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHSC
T ss_pred             --------------------HHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCccc
Confidence                                001111222222    2368999999999999999999998887644

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=4.7e-22  Score=155.10  Aligned_cols=117  Identities=15%  Similarity=0.259  Sum_probs=90.6

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGI   85 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (253)
                      +...+||+++|+.|||||||+++|..+.    +.||+|+...  .+.+  +.+.+.+||++|++.++..+..++.+++++
T Consensus         3 ~k~~~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~~--~~~~--~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~i   74 (221)
T d1azta2           3 YRATHRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFET--KFQV--DKVNFHMFDVGGQRDERRKWIQCFNDVTAI   74 (221)
T ss_dssp             HHHSEEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEEE--EEEE--TTEEEEEEECCCSTTTTTGGGGGCTTCSEE
T ss_pred             chhcCEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEEE--EEEE--CcEEEEEEecCccceeccchhhhcccccce
Confidence            5678999999999999999999997654    3578885543  3433  357899999999999999999999999999


Q ss_pred             EEEEeCCChh----------hHHHHHH-HHHHHHHhcccccceeEEeeeecccccc
Q psy9621          86 MLVYDITNEK----------SFDNILK-WLRNIDEHANEDVEKMILGKTKDTAGQE  130 (253)
Q Consensus        86 ilv~d~~~~~----------s~~~~~~-~~~~i~~~~~~~~p~iiv~nK~D~~~~~  130 (253)
                      ++++|.++..          .+..... |...+......++|++|++||+|+...+
T Consensus        75 i~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k  130 (221)
T d1azta2          75 IFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEK  130 (221)
T ss_dssp             EEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHH
T ss_pred             EEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhh
Confidence            9999988643          2333333 3333333334789999999999998554

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.84  E-value=8.8e-21  Score=148.36  Aligned_cols=116  Identities=19%  Similarity=0.118  Sum_probs=77.3

Q ss_pred             EEEEcCCCCcHHHHHHHhhcCCCCCcccCcc--ceeeEEEE--------------EeeCCeEEEEEEEeCCCcccccccc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDDAFNTTFISTI--GIDFKIKT--------------VDLKGKKIKLQIWDTAGQERFHTIT   75 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~~~~~~~~~~~--~~~~~~~~--------------~~~~~~~~~~~l~Dt~G~~~~~~~~   75 (253)
                      |+|+|++++|||||+++|++...........  ........              ..+.....++.++||||+..|...+
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999998532211100000  00011000              1123345578999999999998888


Q ss_pred             hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccc
Q psy9621          76 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQER  131 (253)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~  131 (253)
                      ...+..+|++|+|+|+.+.-.-... ..+..+..   .++|+++++||+|+.....
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~iivlNK~D~~~~~~  139 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQTQ-EALNILRM---YRTPFVVAANKIDRIHGWR  139 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSTTCC
T ss_pred             hhcccccceEEEEEecccCcccchh-HHHHHhhc---CCCeEEEEEECccCCCchh
Confidence            8889999999999999875433332 22233332   4789999999999985543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=3.9e-20  Score=139.86  Aligned_cols=158  Identities=18%  Similarity=0.231  Sum_probs=95.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc---------------cccc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF---------------HTIT   75 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------------~~~~   75 (253)
                      .|+++|.+|||||||+|+|.+........|  |.+.....+...    .+.+|||||....               ....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~--g~T~~~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSST--TCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCC--CEeecccccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999998765433333  222222222222    2678999995221               1112


Q ss_pred             hhhhcCccEEEEEEeCCChhhHHHHH----------HHHHHHHHhcccccceeEEeeeecccccccccccccccccccee
Q psy9621          76 TSYYRGAMGIMLVYDITNEKSFDNIL----------KWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMG  145 (253)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~~~~----------~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~  145 (253)
                      ....+.+|++++|+|.+.........          ..++.+   ...++|+++|+||+|+...                
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l---~~~~~p~iiv~NK~D~~~~----------------  136 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL---RELDIPTIVAVNKLDKIKN----------------  136 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHH---HHTTCCEEEEEECGGGCSC----------------
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHH---HHcCCCEEEEEeeeehhhh----------------
Confidence            33457899999999987654322211          122222   2257999999999997611                


Q ss_pred             eEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc
Q psy9621         146 IMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK  224 (253)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  224 (253)
                                  .+..   ...+.+...                .........++++||++|.|+++|++.|.+.+.++
T Consensus       137 ------------~~~~---~~~~~~~~~----------------~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         137 ------------VQEV---INFLAEKFE----------------VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             ------------HHHH---HHHHHHHHT----------------CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             ------------HHHH---HHHHHHHhc----------------ccccccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence                        0000   000000000                00001113578999999999999999999888753

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.83  E-value=2e-20  Score=141.75  Aligned_cols=159  Identities=16%  Similarity=0.070  Sum_probs=97.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCc-ccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc------------cc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTT-FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH------------TI   74 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------------~~   74 (253)
                      ..+||+|+|++|||||||+++|++...... ..+..........+..++  ..+.++|+||.....            ..
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhHH
Confidence            469999999999999999999997654211 111111111111233333  457888999864322            22


Q ss_pred             chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccC
Q psy9621          75 TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITN  154 (253)
Q Consensus        75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (253)
                      ....++.+|++++|+|++.+..-+ ...++..+..   .+.|+++++||+|+...                         
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~---~~~~~i~v~nK~D~~~~-------------------------  135 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMER---RGRASVVVFNKWDLVVH-------------------------  135 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH---TTCEEEEEEECGGGSTT-------------------------
T ss_pred             HHHHHhcCCEEEEeecccccchhh-HHHHHHHHHH---cCCceeeeccchhhhcc-------------------------
Confidence            334567899999999998654322 2333333333   46899999999998621                         


Q ss_pred             ccchhhHHHHHHhhhhhcCCCchhhhhhccchhHH-HHHH---Hh-CCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         155 EKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGE-AIAR---EY-GVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                           ..     ...++.. .+.+   .. ..+++++||++|.|+++|++.|.+.+.+
T Consensus       136 ---------------------~~-----~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         136 ---------------------RE-----KRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             ---------------------GG-----GCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ---------------------hh-----hhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence                                 11     0011111 1111   12 2689999999999999999999776654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=4.9e-21  Score=147.77  Aligned_cols=121  Identities=17%  Similarity=0.255  Sum_probs=91.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccccc-ccchhhhcCccEEEEEE
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH-TITTSYYRGAMGIMLVY   89 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~~ilv~   89 (253)
                      +|+++|++|||||||+++|+++.+... .++.+.++....+ .+...+.+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            799999999999999999999887765 4566655543333 24456789999999998875 45677889999999999


Q ss_pred             eCCChhh-HHHHHHHHHHHHHh---cccccceeEEeeeeccccccccc
Q psy9621          90 DITNEKS-FDNILKWLRNIDEH---ANEDVEKMILGKTKDTAGQERFH  133 (253)
Q Consensus        90 d~~~~~s-~~~~~~~~~~i~~~---~~~~~p~iiv~nK~D~~~~~~~~  133 (253)
                      |+++..+ +.....++..+...   ...++|++|++||+|+..+...+
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~  127 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAK  127 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHH
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHH
Confidence            9999766 34444555444332   23678999999999998655543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=2.9e-20  Score=147.88  Aligned_cols=213  Identities=15%  Similarity=0.132  Sum_probs=130.6

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhc--CCCCC-----------ccc---CccceeeEEEEEeeCCeEEEEEEEeCCCcc
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSD--DAFNT-----------TFI---STIGIDFKIKTVDLKGKKIKLQIWDTAGQE   69 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~--~~~~~-----------~~~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   69 (253)
                      .+...||+++|+.|+|||||+.+++.  +....           .+.   ...+++.......+..+..+++++||||+.
T Consensus         3 ~~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~   82 (276)
T d2bv3a2           3 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHV   82 (276)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSS
T ss_pred             hhhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchh
Confidence            45667999999999999999999963  11110           000   001122222222333345679999999999


Q ss_pred             cccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccc-cccceeeEE
Q psy9621          70 RFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSY-YRGAMGIML  148 (253)
Q Consensus        70 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~~~~~~~  148 (253)
                      .|.......++.+|++|+|+|..+.-.-.....|... .   ..++|.+++.||+|..+++-.+.+.+.. ........+
T Consensus        83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a-~---~~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~~~vp~  158 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-E---KYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVM  158 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHH-H---TTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEEC
T ss_pred             hhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHH-H---HcCCCEEEEEecccccccccchhHHHHHHHhCCCeEEE
Confidence            9999999999999999999999987666665556322 2   3589999999999999876443333321 011111111


Q ss_pred             EEe--------------------------------ccCccchhhHHHHHHhhhhhcCCCchhhhh------hccchhHH-
Q psy9621         149 VYD--------------------------------ITNEKSFDNILKWLRNIDEHANEDPQVVNS------WVCKHRGE-  189 (253)
Q Consensus       149 ~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-  189 (253)
                      +++                                ....+..+...++..++.+...+.++....      .+..++.. 
T Consensus       159 ~~Pig~~~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~l~e~vae~Dd~L~e~yle~~e~~~eel~~  238 (276)
T d2bv3a2         159 QLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVA  238 (276)
T ss_dssp             EEEESCGGGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHH
T ss_pred             EecccCCCceeEEeeccceEEEEecCCCCccceeccCchHHHHHHHHHHHHHhhhhhcccHHHHHHHhcCCCCCHHHHHH
Confidence            211                                112233445566666555544332221110      02222222 


Q ss_pred             ----HHHHHhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         190 ----AIAREYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       190 ----~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                          .+.+..-+|+|..||.++.||+.|++.|.+.+.
T Consensus       239 ~l~~a~~~g~i~PV~~GSA~~n~GV~~LLD~i~~~~P  275 (276)
T d2bv3a2         239 AIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLP  275 (276)
T ss_dssp             HHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHhcCcEEEEEEeECCCCcCHHHHHHHHHHhCC
Confidence                112222379999999999999999999988653

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.82  E-value=1.8e-20  Score=141.98  Aligned_cols=157  Identities=14%  Similarity=0.083  Sum_probs=96.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCccc----ccccchh---hhcCcc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER----FHTITTS---YYRGAM   83 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~---~~~~~d   83 (253)
                      +|+|+|.+|||||||+|+|.+........+....+.......+. ....+.+|||||...    ...+...   .+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEec-CCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            69999999999999999998765432222211112222222222 223588999999632    2222222   235678


Q ss_pred             EEEEEEeCCChhhHHHHH--HHHHHHHHh---cccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccch
Q psy9621          84 GIMLVYDITNEKSFDNIL--KWLRNIDEH---ANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSF  158 (253)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~--~~~~~i~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (253)
                      .++++++...........  .+.......   ...++|+++|+||+|+..                              
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~------------------------------  131 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE------------------------------  131 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT------------------------------
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHh------------------------------
Confidence            888888766543322222  111111111   124689999999999861                              


Q ss_pred             hhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh--CCceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         159 DNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY--GVRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                               .....+.+.+.+  +.+++.+||++|.|+++|++.|.+.+.+
T Consensus       132 -------------------------~~~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         132 -------------------------AAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             -------------------------HHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             -------------------------HHHHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhhhh
Confidence                                     111223344444  4789999999999999999999988754

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.81  E-value=1.3e-19  Score=138.44  Aligned_cols=165  Identities=14%  Similarity=0.084  Sum_probs=103.9

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCCCc---ccC--ccceeeEEEEEee-------------------CCeEEEEE
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT---FIS--TIGIDFKIKTVDL-------------------KGKKIKLQ   61 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~---~~~--~~~~~~~~~~~~~-------------------~~~~~~~~   61 (253)
                      .++.+||+++|+.++|||||+++|++......   ...  +....+.......                   ......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            35688999999999999999999986332211   111  1111111111110                   11235689


Q ss_pred             EEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccc
Q psy9621          62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYR  141 (253)
Q Consensus        62 l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~  141 (253)
                      ++||||+..|.......+..+|++++|+|+.+........+.+..+...  .-.+++++.||+|+...            
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~--~~~~iiv~inK~D~~d~------------  147 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII--GQKNIIIAQNKIELVDK------------  147 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCH------------
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh--cCccceeeeecccchhh------------
Confidence            9999999999888888889999999999998763222222333333222  22457888999998621            


Q ss_pred             cceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh---CCceEEeeccCCCCHHHHHHHHH
Q psy9621         142 GAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY---GVRFMETSAKANINIEKAFIELA  218 (253)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~  218 (253)
                                                        ....   .......++.+..   .++++++||++|+|+++|++.+.
T Consensus       148 ----------------------------------~~~~---~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~  190 (195)
T d1kk1a3         148 ----------------------------------EKAL---ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIE  190 (195)
T ss_dssp             ----------------------------------HHHH---HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             ----------------------------------HHHH---HHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence                                              1000   0111222333332   27899999999999999999887


Q ss_pred             HHH
Q psy9621         219 TAI  221 (253)
Q Consensus       219 ~~~  221 (253)
                      ..+
T Consensus       191 ~~i  193 (195)
T d1kk1a3         191 DFI  193 (195)
T ss_dssp             HHS
T ss_pred             HHC
Confidence            654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.80  E-value=9.2e-19  Score=133.57  Aligned_cols=160  Identities=12%  Similarity=0.108  Sum_probs=93.5

Q ss_pred             ccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc----------c
Q psy9621           3 KKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF----------H   72 (253)
Q Consensus         3 ~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~   72 (253)
                      ++|.+...+|+|+|++|||||||+++|++........+..+.+..........   .+.+.|++|....          .
T Consensus        17 ~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~   93 (195)
T d1svia_          17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWG   93 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred             HCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhh
Confidence            45667777999999999999999999997543222222222222222222222   2345566553211          1


Q ss_pred             ---ccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEE
Q psy9621          73 ---TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLV  149 (253)
Q Consensus        73 ---~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  149 (253)
                         ......+..++++++++|++.+..-. ...+++.+..   .++|+++|+||+|+...                    
T Consensus        94 ~~~~~~~~~~~~~~~vi~viD~~~~~~~~-~~~~~~~l~~---~~~piivv~NK~D~~~~--------------------  149 (195)
T d1svia_          94 RMIETYITTREELKAVVQIVDLRHAPSND-DVQMYEFLKY---YGIPVIVIATKADKIPK--------------------  149 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH---TTCCEEEEEECGGGSCG--------------------
T ss_pred             hHHhhhhccccchhhhhhhhhcccccccc-cccccccccc---ccCcceechhhccccCH--------------------
Confidence               11122345679999999987654321 2234444433   46899999999998511                    


Q ss_pred             EeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHH----hCCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         150 YDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIARE----YGVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                                                ..      ..+..+.+.+.    ...+++.+||++|.|++++++.|.+.+
T Consensus       150 --------------------------~~------~~~~~~~~~~~l~~~~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         150 --------------------------GK------WDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             --------------------------GG------HHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             --------------------------HH------HHHHHHHHHHHhcccCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence                                      11      01112222222    336889999999999999999998876

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.79  E-value=6e-19  Score=135.69  Aligned_cols=165  Identities=13%  Similarity=0.084  Sum_probs=100.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCc---ccCcc--ceeeEEEEEee------------------------CCeE
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTT---FISTI--GIDFKIKTVDL------------------------KGKK   57 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~---~~~~~--~~~~~~~~~~~------------------------~~~~   57 (253)
                      .+.+||+++|+.++|||||+++|++......   .....  ...........                        ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            4568999999999999999999985221110   00000  00000000000                        1113


Q ss_pred             EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccc
Q psy9621          58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITT  137 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  137 (253)
                      ..+.++||||+..|.......+..+|++|+|+|+.+.-.....++.+..+...  .-.|++|+.||+|+......     
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~--~i~~iIV~vNK~Dl~~~~~~-----  158 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII--GVKNLIIVQNKVDVVSKEEA-----  158 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECGGGSCHHHH-----
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc--CCceeeeccccCCCccchHH-----
Confidence            46899999999999887777888999999999998753111112222222221  23488899999999721100     


Q ss_pred             cccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh---CCceEEeeccCCCCHHHHH
Q psy9621         138 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY---GVRFMETSAKANINIEKAF  214 (253)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~  214 (253)
                                           .                       ........+....   .++++++||++|.||++|+
T Consensus       159 ---------------------~-----------------------~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~  194 (205)
T d2qn6a3         159 ---------------------L-----------------------SQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLI  194 (205)
T ss_dssp             ---------------------H-----------------------HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHH
T ss_pred             ---------------------H-----------------------HHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHH
Confidence                                 0                       0011122222222   3789999999999999999


Q ss_pred             HHHHHHHH
Q psy9621         215 IELATAIY  222 (253)
Q Consensus       215 ~~l~~~~~  222 (253)
                      +.|...+.
T Consensus       195 e~i~~~ip  202 (205)
T d2qn6a3         195 EGIEEYIK  202 (205)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHhhCC
Confidence            98877643

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.78  E-value=6.2e-19  Score=139.84  Aligned_cols=205  Identities=10%  Similarity=0.097  Sum_probs=121.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCC--CCC------c----------ccCccceeeEEEEEeeCCeEEEEEEEeCCCccc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDA--FNT------T----------FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER   70 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~--~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   70 (253)
                      ..||+++|+.++|||||+.+++...  ...      .          ......+......+..+  ..++.++||||+..
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~--~~~~n~iDtPGh~d   79 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGYGD   79 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCSGG
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccccc--ccceeEEccCchhh
Confidence            4689999999999999999996311  100      0          01111222333334444  45699999999999


Q ss_pred             ccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeecccccc--ccccccccccccceeeEE
Q psy9621          71 FHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQE--RFHTITTSYYRGAMGIML  148 (253)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~  148 (253)
                      |.......++.+|++|+|+|+.+.-.......|... .+   .++|.+++.||+|.....  ..+.+++.+-   ....+
T Consensus        80 F~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~-~~---~~~p~~i~iNk~D~~~~~~~~l~~~~~~lg---~~vp~  152 (267)
T d2dy1a2          80 FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVA-ER---LGLPRMVVVTKLDKGGDYYALLEDLRSTLG---PILPI  152 (267)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HH---TTCCEEEEEECGGGCCCHHHHHHHHHHHHC---SEEEC
T ss_pred             hhhhhhhhhcccCceEEEeeccCCccchhHHHHHhh-hh---cccccccccccccccccchhhhhhHHHHhc---cCcCe
Confidence            999999999999999999999987666665555332 22   479999999999974321  1122222221   11122


Q ss_pred             EEec-----------------------------cCccchhhHHHHHHhhhhhcCCCchhh-h-----hhccchhHHHHHH
Q psy9621         149 VYDI-----------------------------TNEKSFDNILKWLRNIDEHANEDPQVV-N-----SWVCKHRGEAIAR  193 (253)
Q Consensus       149 ~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~  193 (253)
                      ++++                             ...+..+....+.+++.+..-+..+.. .     ..+..++..+..+
T Consensus       153 ~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~~~~~~r~~L~E~vae~Dd~Lle~yle~~~l~~eel~~~l~  232 (267)
T d2dy1a2         153 DLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFH  232 (267)
T ss_dssp             EEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             EeeeccCCceeEEeecCcceEEEecCCCCceeeCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCcccHHHHHHHHH
Confidence            2221                             112223334444444443332221111 0     0022222222211


Q ss_pred             -----HhCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         194 -----EYGVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       194 -----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                           ..-+|++..||.++.||+.|++.|...+.
T Consensus       233 ~ai~~g~i~PV~~GSA~~n~GV~~LLd~i~~~~P  266 (267)
T d2dy1a2         233 EAVRRGLLYPVALASGEREIGVLPLLELILEALP  266 (267)
T ss_dssp             HHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhCC
Confidence                 12269999999999999999999987653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.78  E-value=3.4e-19  Score=135.64  Aligned_cols=117  Identities=13%  Similarity=0.027  Sum_probs=81.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcC-----C-CC--------CcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDD-----A-FN--------TTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT   73 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~-----~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   73 (253)
                      +.+||+++|+.++|||||+++|+..     . ..        .......|++.......+......+.++||||+..|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            4689999999999999999999741     0 00        00112234455544555555566799999999999988


Q ss_pred             cchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          74 ITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .....+..+|++|+|+|+.+...-+. ++.+..+...  .-.|++++.||+|+.
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~--~~~~iIv~iNK~D~~  132 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI--GVEHVVVYVNKADAV  132 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT--TCCCEEEEEECGGGC
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHHh--cCCcEEEEEeccccc
Confidence            77788899999999999987543222 2222222222  235788899999986

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=6.6e-18  Score=129.42  Aligned_cols=116  Identities=15%  Similarity=0.089  Sum_probs=79.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcC--------CCCC----cccC---ccceeeEEEEEeeCCeEEEEEEEeCCCccccc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDD--------AFNT----TFIS---TIGIDFKIKTVDLKGKKIKLQIWDTAGQERFH   72 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~--------~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   72 (253)
                      +.+||+++|+.++|||||+++|+..        ....    .+.+   ..|++.......+...+.++.++||||+..|.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            4689999999999999999999631        0100    0000   01333333333344445678999999999998


Q ss_pred             ccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          73 TITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                      ......+..+|++|+|+|+++....+..+.|.. +..   .++| ++++.||+|+.
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~-~~~---~gi~~iiv~iNK~D~~  133 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQTREHILL-ARQ---VGVPYIVVFMNKVDMV  133 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHH-HHH---TTCCCEEEEEECGGGC
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHH-HHH---cCCCeEEEEEEecccC
Confidence            888888999999999999988765554443322 222   3676 66779999986

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=3.7e-17  Score=122.65  Aligned_cols=160  Identities=12%  Similarity=0.103  Sum_probs=98.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccc---------cccchh
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERF---------HTITTS   77 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~   77 (253)
                      .+.=.|+|+|.+|||||||+|+|++........+.............. ....+..||++|....         ......
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeec-CCceeEeecCCCceecchhhhhhhhhhcccc
Confidence            345579999999999999999999765432211111111111112111 2234667888875321         112223


Q ss_pred             hhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCccc
Q psy9621          78 YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS  157 (253)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (253)
                      ....+++++++.|.+.....  ...+...+.   ....|.++++||.|..                              
T Consensus        82 ~~~~~~~~l~~~d~~~~~~~--~~~~~~~l~---~~~~~~i~v~~k~d~~------------------------------  126 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTPD--DEMVLNKLR---EGKAPVILAVNKVDNV------------------------------  126 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCHH--HHHHHHHHH---SSSSCEEEEEESTTTC------------------------------
T ss_pred             chhhcceeEEEEecCccchh--HHHHHHHhh---hccCceeeeeeeeecc------------------------------
Confidence            34567888888887754322  222222222   3568899999999986                              


Q ss_pred             hhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhC-CceEEeeccCCCCHHHHHHHHHHHHHh
Q psy9621         158 FDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYG-VRFMETSAKANINIEKAFIELATAIYD  223 (253)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~  223 (253)
                                      ....     ......+.+...++ .+++++||++|.|+++|++.|.+.+.+
T Consensus       127 ----------------~~~~-----~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~lpe  172 (179)
T d1egaa1         127 ----------------QEKA-----DLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE  172 (179)
T ss_dssp             ----------------CCHH-----HHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             ----------------chhh-----hhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHHhCCC
Confidence                            2222     22234455555666 689999999999999999998776533

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.72  E-value=3.4e-17  Score=126.71  Aligned_cols=120  Identities=15%  Similarity=0.122  Sum_probs=79.2

Q ss_pred             CccccCceeEEEEEcCCCCcHHHHHHHhhc--CCCCC-------------------------------cccCccceeeEE
Q psy9621           2 AKKTYDFLFKLLLIGDSGVGKTCVLFRFSD--DAFNT-------------------------------TFISTIGIDFKI   48 (253)
Q Consensus         2 ~~~~~~~~~ki~vvG~~~~GKStL~~~l~~--~~~~~-------------------------------~~~~~~~~~~~~   48 (253)
                      +++.....+||+++|+.++|||||+.+|+.  +....                               .......++...
T Consensus         2 ~~~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~   81 (222)
T d1zunb3           2 GQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAY   81 (222)
T ss_dssp             CSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEE
T ss_pred             cccccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeE
Confidence            456777899999999999999999999963  11100                               000111112222


Q ss_pred             EEEeeCCeEEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          49 KTVDLKGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        49 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                      ...  ......+.++|+||+..|..........+|++|+|+|+.....-+....+ . +...  .+++ ++++.||+|+.
T Consensus        82 ~~~--~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~-~-~~~~--~gv~~iiv~vNK~D~~  155 (222)
T d1zunb3          82 RYF--STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHS-Y-IASL--LGIKHIVVAINKMDLN  155 (222)
T ss_dssp             EEE--ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHH-H-HHHH--TTCCEEEEEEECTTTT
T ss_pred             EEE--eccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHH-H-HHHH--cCCCEEEEEEEccccc
Confidence            222  22345689999999999988888888999999999999875433322221 1 1111  3555 78899999987

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=2.1e-17  Score=127.07  Aligned_cols=116  Identities=15%  Similarity=0.243  Sum_probs=81.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccccchhh----hcCccE
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTITTSY----YRGAMG   84 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~~~d~   84 (253)
                      ..+|+++|++|||||||+|+|.++.+.+.    ...+.....  +......+.+||+||++.+......+    ...++.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~----tt~~~~~~~--~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQEPLSA--ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCB----CCCSSCEEE--TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCe----EEecceEEE--EEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            44899999999999999999998776543    221222222  34445568999999998776555443    445688


Q ss_pred             EEEEEeCCC-hhhHHHHHHHHHHH----HHhcccccceeEEeeeecccccc
Q psy9621          85 IMLVYDITN-EKSFDNILKWLRNI----DEHANEDVEKMILGKTKDTAGQE  130 (253)
Q Consensus        85 ~ilv~d~~~-~~s~~~~~~~~~~i----~~~~~~~~p~iiv~nK~D~~~~~  130 (253)
                      +++++|+.+ ..++.....|+..+    ......++|+++++||+|+....
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            888888664 55666666655443    34445789999999999997543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=2.1e-16  Score=119.03  Aligned_cols=168  Identities=13%  Similarity=0.061  Sum_probs=86.9

Q ss_pred             CCccccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCcccccc-------
Q psy9621           1 MAKKTYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHT-------   73 (253)
Q Consensus         1 m~~~~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------   73 (253)
                      |.+.|.+..++|+++|.+|||||||+|++++............................+..++.++......       
T Consensus         8 ~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (188)
T d1puia_           8 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQR   87 (188)
T ss_dssp             GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHH
T ss_pred             hhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhh
Confidence            4567899999999999999999999999998765433222211111212222222222233333322211111       


Q ss_pred             cchh---hhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEE
Q psy9621          74 ITTS---YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVY  150 (253)
Q Consensus        74 ~~~~---~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  150 (253)
                      ....   .....+.++.+.+........ ...++..+..   ...++++++||+|+...                     
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~v~~k~D~~~~---------------------  142 (188)
T d1puia_          88 ALGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVD---SNIAVLVLLTKADKLAS---------------------  142 (188)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH---TTCCEEEEEECGGGSCH---------------------
T ss_pred             hhhhhhhhhhheeEEEEeecccccchhH-HHHHHHHhhh---ccccccchhhhhhccCH---------------------
Confidence            1111   123344555566655443222 2333333333   46899999999998621                     


Q ss_pred             eccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHh--CCceEEeeccCCCCHHHHHHHHHHHH
Q psy9621         151 DITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREY--GVRFMETSAKANINIEKAFIELATAI  221 (253)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~  221 (253)
                                               ... .  ...+..++..+..  ..+++.+||++|.|+++|++.|...+
T Consensus       143 -------------------------~~~-~--~~~~~~~~~l~~~~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         143 -------------------------GAR-K--AQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             -------------------------HHH-H--HHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             -------------------------HHH-H--HHHHHHHHHHHhhCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence                                     100 0  0111112222222  25889999999999999999886643

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.63  E-value=1.8e-16  Score=123.26  Aligned_cols=120  Identities=16%  Similarity=0.109  Sum_probs=74.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcC--CCCC---------------------------cccCccceeeEEEEEeeCCeEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDD--AFNT---------------------------TFISTIGIDFKIKTVDLKGKKI   58 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~   58 (253)
                      +.+||+++|+.++|||||+.+|+..  ....                           ......|++.......+.....
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            3689999999999999999998631  0000                           0001112222222333344456


Q ss_pred             EEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHH---HHHHHHHHHHhcc-cccceeEEeeeeccc
Q psy9621          59 KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDN---ILKWLRNIDEHAN-EDVEKMILGKTKDTA  127 (253)
Q Consensus        59 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~---~~~~~~~i~~~~~-~~~p~iiv~nK~D~~  127 (253)
                      .+.++|||||..|.......++.+|++|+|+|+.+...-..   ..+..+.+..... ...+++++.||+|+.
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~  154 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT  154 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCC
Confidence            79999999999999999999999999999999987532111   1111111111111 234688889999986

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.61  E-value=2e-16  Score=124.29  Aligned_cols=120  Identities=11%  Similarity=0.067  Sum_probs=62.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc--CCCCC---------------------------cccCccceeeEEEEEeeCCeEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD--DAFNT---------------------------TFISTIGIDFKIKTVDLKGKKI   58 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~   58 (253)
                      ..+||+++|+.++|||||+.+|+.  +....                           ......+...............
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~  102 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR  102 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccc
Confidence            478999999999999999999952  11100                           0000011111111112223345


Q ss_pred             EEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhh---HHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          59 KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS---FDNILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        59 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                      .+.++||||+..|..........+|++|+|+|+....-   +....+..+.+.-....++| ++++.||+|+.
T Consensus       103 ~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~  175 (245)
T d1r5ba3         103 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP  175 (245)
T ss_dssp             EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred             eeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCC
Confidence            79999999999999888888999999999999986421   10000111111111113555 77889999986

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=1.2e-15  Score=119.21  Aligned_cols=116  Identities=13%  Similarity=0.060  Sum_probs=75.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc--CCCCC----------------c-----------ccCccceeeEEEEEeeCCeEE
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD--DAFNT----------------T-----------FISTIGIDFKIKTVDLKGKKI   58 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~--~~~~~----------------~-----------~~~~~~~~~~~~~~~~~~~~~   58 (253)
                      +.+||+++|+.++|||||+.+|+.  +....                .           .....|++.......+.....
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~   84 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   84 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCE
Confidence            358999999999999999999863  11110                0           001112222222222333456


Q ss_pred             EEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhh-------HHHHHHHHHHHHHhcccccc-eeEEeeeeccc
Q psy9621          59 KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKS-------FDNILKWLRNIDEHANEDVE-KMILGKTKDTA  127 (253)
Q Consensus        59 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s-------~~~~~~~~~~i~~~~~~~~p-~iiv~nK~D~~  127 (253)
                      ++.++|||||..|.......+..+|++|+|+|++...-       -+....| ....   .-++| ++++.||+|+.
T Consensus        85 ~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~-~~~~---~~gv~~iiv~iNKmD~~  157 (239)
T d1f60a3          85 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAF---TLGVRQLIVAVNKMDSV  157 (239)
T ss_dssp             EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHH---HTTCCEEEEEEECGGGG
T ss_pred             EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHH-HHHH---HcCCCeEEEEEECCCCC
Confidence            79999999999998888888999999999999975421       0111122 1111   13566 67899999986

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=4.2e-14  Score=115.39  Aligned_cols=119  Identities=14%  Similarity=0.155  Sum_probs=84.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc--CCCC--------------CcccCccceeeEEEEEee--------------CCe
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD--DAFN--------------TTFISTIGIDFKIKTVDL--------------KGK   56 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~--~~~~--------------~~~~~~~~~~~~~~~~~~--------------~~~   56 (253)
                      +...||+|+|+.++|||||+.+|+.  +...              .+..+.+.+......+..              +++
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            4456899999999999999999962  1110              000111111112222211              335


Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccc
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ  129 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  129 (253)
                      ...++++||||+..|.......++.+|++|+|+|+...-..+..+.|....    ..++|+++++||+|....
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~----~~~~p~i~viNKiDr~~~  163 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL----GERIKPVVVINKVDRALL  163 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHHHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH----HcCCCeEEEEECcccccc
Confidence            678999999999999999999999999999999999877666655554443    246899999999998744

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=2e-13  Score=114.42  Aligned_cols=113  Identities=12%  Similarity=0.144  Sum_probs=68.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccc---eeeEEEEEeeCCeEEEEEEEeCCCccccccc-----chhhh
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIG---IDFKIKTVDLKGKKIKLQIWDTAGQERFHTI-----TTSYY   79 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----~~~~~   79 (253)
                      ..++|+|+|.+|||||||+|+|++...........+   .+......... ....+.+|||||-......     ....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            468999999999999999999997543222111111   11111222222 2334789999997543222     22345


Q ss_pred             cCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          80 RGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ..+|.+|++.|..-..   ....++..+..   .+.|+++|.||+|..
T Consensus       134 ~~~d~~l~~~~~~~~~---~d~~l~~~l~~---~~k~~~~V~nK~D~~  175 (400)
T d1tq4a_         134 YEYDFFIIISATRFKK---NDIDIAKAISM---MKKEFYFVRTKVDSD  175 (400)
T ss_dssp             GGCSEEEEEESSCCCH---HHHHHHHHHHH---TTCEEEEEECCHHHH
T ss_pred             hcceEEEEecCCCCCH---HHHHHHHHHHH---cCCCEEEEEeCcccc
Confidence            6788888887643221   12234444433   468999999999974

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.47  E-value=4.1e-14  Score=110.76  Aligned_cols=136  Identities=13%  Similarity=0.005  Sum_probs=72.3

Q ss_pred             EEEEEEeCCCcccccccchhh---h--cCccEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccccceeEEeeeeccccc
Q psy9621          58 IKLQIWDTAGQERFHTITTSY---Y--RGAMGIMLVYDITN---EKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQ  129 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~~~~~---~--~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~  129 (253)
                      ..+.++|+||+.++.......   .  ...+.+++++|+..   +..+............  .-..|.+++.||+|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~--~~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH--HhCCCceeeeeccccccH
Confidence            358899999997653332221   1  24567888888653   3333332222222222  247899999999999843


Q ss_pred             cccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCc--hhhhhhccchhHHHHHHH-hCCceEEeeccC
Q psy9621         130 ERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDP--QVVNSWVCKHRGEAIARE-YGVRFMETSAKA  206 (253)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~  206 (253)
                      ..                          ......|.+.+........  .................. ..++++++||++
T Consensus       173 ~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~  226 (244)
T d1yrba1         173 EE--------------------------KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKT  226 (244)
T ss_dssp             HH--------------------------HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTT
T ss_pred             HH--------------------------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCC
Confidence            22                          2222223222221110000  000000111111111111 237999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy9621         207 NINIEKAFIELATAI  221 (253)
Q Consensus       207 ~~gi~~l~~~l~~~~  221 (253)
                      |+|+++|++.|.+..
T Consensus       227 geGi~~L~~~l~e~~  241 (244)
T d1yrba1         227 REGFEDLETLAYEHY  241 (244)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999987754

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.42  E-value=4.7e-13  Score=105.69  Aligned_cols=120  Identities=14%  Similarity=0.077  Sum_probs=72.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhcCCCCCccc-CccceeeEEEEEeeCCeEEEEEEEeCCCcccccccc-------hh-
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFI-STIGIDFKIKTVDLKGKKIKLQIWDTAGQERFHTIT-------TS-   77 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~-   77 (253)
                      ...++|+++|.+|||||||+|.+++........ +....+.........+  ..+.+|||||........       .. 
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            457999999999999999999999866443321 1111122222334444  469999999964322111       11 


Q ss_pred             -hhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccc--ccceeEEeeeecccc
Q psy9621          78 -YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANE--DVEKMILGKTKDTAG  128 (253)
Q Consensus        78 -~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~iiv~nK~D~~~  128 (253)
                       .....+++++|++++...--......+..+...++.  -.++++|.||.|...
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  161 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence             124578888888877542111122333333333322  357899999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.14  E-value=8.6e-11  Score=95.12  Aligned_cols=104  Identities=11%  Similarity=0.079  Sum_probs=63.1

Q ss_pred             EEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccc
Q psy9621          58 IKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITT  137 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  137 (253)
                      +.+.++.|.|...-.   ......+|.+++|......+..+.+..-+.        .++-++|.||+|+.+...      
T Consensus       144 ~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~gil--------E~aDi~vvNKaD~~~~~~------  206 (323)
T d2qm8a1         144 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIF--------ELADMIAVNKADDGDGER------  206 (323)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHH--------HHCSEEEEECCSTTCCHH------
T ss_pred             CCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhhhHh--------hhhheeeEeccccccchH------
Confidence            457788888753322   224567999999999888765554332222        357789999999863211      


Q ss_pred             cccccceeeEEEEeccCccchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHH----------HhCCceEEeeccCC
Q psy9621         138 SYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAR----------EYGVRFMETSAKAN  207 (253)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~  207 (253)
                                                                   ........+..          .+..+++.+||++|
T Consensus       207 ---------------------------------------------~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g  241 (323)
T d2qm8a1         207 ---------------------------------------------RASAAASEYRAALHILTPPSATWTPPVVTISGLHG  241 (323)
T ss_dssp             ---------------------------------------------HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTT
T ss_pred             ---------------------------------------------HHHHHHHHHHHHhhcccccccCCCCceEEEEecCC
Confidence                                                         00011111111          13468999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q psy9621         208 INIEKAFIELATAIYD  223 (253)
Q Consensus       208 ~gi~~l~~~l~~~~~~  223 (253)
                      .|++++++.|.+....
T Consensus       242 ~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         242 KGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999776543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=6.6e-11  Score=95.94  Aligned_cols=27  Identities=15%  Similarity=0.122  Sum_probs=23.3

Q ss_pred             CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy9621         196 GVRFMETSAKANINIEKAFIELATAIY  222 (253)
Q Consensus       196 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~  222 (253)
                      ..+++.|||.+|.|+++|++.|.+...
T Consensus       232 ~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         232 QPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             CCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             cceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            368999999999999999999977554

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.85  E-value=1.3e-08  Score=80.60  Aligned_cols=78  Identities=18%  Similarity=0.200  Sum_probs=50.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcCCCCCc------ccCccceeeEEEEEeeCCe-------------E--EEEEEEeCCC
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTT------FISTIGIDFKIKTVDLKGK-------------K--IKLQIWDTAG   67 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~-------------~--~~~~l~Dt~G   67 (253)
                      .+||.+||.|+||||||+++++.......      ..|.+|+      +.+.+.             .  ..+.++|+||
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gv------v~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~G   75 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV------VPMPDPRLDALAEIVKPERILPTTMEFVDIAG   75 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSE------EECCCHHHHHHHHHHCCSEEECCEEEEEECCS
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEE------EecccHhHHHHHHhcCCCceeeeeEEEEEccc
Confidence            47999999999999999999997654322      1233332      222211             1  2588999999


Q ss_pred             ccc----ccccchh---hhcCccEEEEEEeCC
Q psy9621          68 QER----FHTITTS---YYRGAMGIMLVYDIT   92 (253)
Q Consensus        68 ~~~----~~~~~~~---~~~~~d~~ilv~d~~   92 (253)
                      .-.    -.++...   .++.+|++|.|+|+.
T Consensus        76 Li~ga~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          76 LVAGASKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             CCTTHHHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCcccCCCccHHHHHHHHhccceEEEeecc
Confidence            632    2334443   457899999999863

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.75  E-value=7.3e-09  Score=83.76  Aligned_cols=84  Identities=18%  Similarity=0.194  Sum_probs=45.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcCCCCCcc------cCccceeeEEEEEe----------------eCCeEEEEEEEeCCC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTF------ISTIGIDFKIKTVD----------------LKGKKIKLQIWDTAG   67 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~~~~~~~------~~~~~~~~~~~~~~----------------~~~~~~~~~l~Dt~G   67 (253)
                      ++|.++|.|+||||||+|++++.+.....      .|-+|+.+......                .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            58999999999999999999976543221      12223222111100                011236799999999


Q ss_pred             cccc----cccchh---hhcCccEEEEEEeCCC
Q psy9621          68 QERF----HTITTS---YYRGAMGIMLVYDITN   93 (253)
Q Consensus        68 ~~~~----~~~~~~---~~~~~d~~ilv~d~~~   93 (253)
                      ....    ..+...   .++.+|+++.|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            6321    223333   3468999999999863

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=3.8e-08  Score=78.65  Aligned_cols=120  Identities=15%  Similarity=0.204  Sum_probs=73.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCC-CCcccCccce----eeEEE---EEee---CC---------------------
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAF-NTTFISTIGI----DFKIK---TVDL---KG---------------------   55 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~-~~~~~~~~~~----~~~~~---~~~~---~~---------------------   55 (253)
                      ...+|+|+|..++|||||+|+|++..+ +....++...    .+...   ...+   .+                     
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            355899999999999999999998775 3333332211    11100   0000   00                     


Q ss_pred             ------------------eEEEEEEEeCCCcccc-------------cccchhhhcCccEE-EEEEeCCChhhHHHHHHH
Q psy9621          56 ------------------KKIKLQIWDTAGQERF-------------HTITTSYYRGAMGI-MLVYDITNEKSFDNILKW  103 (253)
Q Consensus        56 ------------------~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~-ilv~d~~~~~s~~~~~~~  103 (253)
                                        ....+.++|+||....             ..+...|+..++.+ ++|.+.+...+-.....+
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                              0123789999996321             23345566777654 556677665555555566


Q ss_pred             HHHHHHhcccccceeEEeeeecccccc
Q psy9621         104 LRNIDEHANEDVEKMILGKTKDTAGQE  130 (253)
Q Consensus       104 ~~~i~~~~~~~~p~iiv~nK~D~~~~~  130 (253)
                      .+.+..   ...++++|.||+|.....
T Consensus       185 ~~~~~~---~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         185 AKEVDP---QGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHCT---TCSSEEEEEECGGGSCTT
T ss_pred             HHHhCc---CCCceeeEEeccccccch
Confidence            555433   357899999999988653

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.65  E-value=9.1e-08  Score=76.34  Aligned_cols=85  Identities=18%  Similarity=0.205  Sum_probs=53.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcCCC--CCcccCccceeeEEEEEeeCCe---------------EEEEEEEeCCCcc-
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDDAF--NTTFISTIGIDFKIKTVDLKGK---------------KIKLQIWDTAGQE-   69 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~-   69 (253)
                      ..+||.+||.|+||||||++++++...  ...|. ...++...-.+.+.+.               ...+.+.|.||.. 
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anyp-ftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYP-YATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCS-SCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCC-ccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            358999999999999999999996543  22221 1111111112333221               2468899999853 


Q ss_pred             ---cccccchhh---hcCccEEEEEEeCCC
Q psy9621          70 ---RFHTITTSY---YRGAMGIMLVYDITN   93 (253)
Q Consensus        70 ---~~~~~~~~~---~~~~d~~ilv~d~~~   93 (253)
                         +-.++...|   ++.+|++|.|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence               333444444   579999999999765

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.63  E-value=3.5e-08  Score=79.19  Aligned_cols=69  Identities=13%  Similarity=0.234  Sum_probs=43.9

Q ss_pred             EEEEEeCCCccc-------------ccccchhhhcCccEEEEEE-eCCChhhHHHHHHHHHHHHHhcccccceeEEeeee
Q psy9621          59 KLQIWDTAGQER-------------FHTITTSYYRGAMGIMLVY-DITNEKSFDNILKWLRNIDEHANEDVEKMILGKTK  124 (253)
Q Consensus        59 ~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~-d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~  124 (253)
                      .+.++||||...             ...+...|+..++.+|+++ +.+....-.....+.+.+.   .....+++|.||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~---~~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhC---cCCCeEEEEEecc
Confidence            477999999632             1345566888999877765 4443333333344444442   2456899999999


Q ss_pred             cccccc
Q psy9621         125 DTAGQE  130 (253)
Q Consensus       125 D~~~~~  130 (253)
                      |.....
T Consensus       209 D~~~~~  214 (306)
T d1jwyb_         209 DLMDKG  214 (306)
T ss_dssp             TSSCSS
T ss_pred             ccccch
Confidence            987543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.56  E-value=3.1e-08  Score=78.19  Aligned_cols=60  Identities=25%  Similarity=0.328  Sum_probs=37.4

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhhcCCCCCcccCccceeeEEEEEeeCCeEEEEEEEeCCCc
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVDLKGKKIKLQIWDTAGQ   68 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   68 (253)
                      .....++|+|+|.||||||||+|++.+...... .+..|++.....+..+   ..+.++||||-
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~-~~~pG~Tr~~~~i~~~---~~~~l~DTPGi  167 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVG---KELELLDTPGI  167 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEET---TTEEEEECCCC
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhccceEEE-CCcccccccceEEECC---CCeEEecCCCc
Confidence            345679999999999999999999998655433 3333444443333322   23899999996

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.35  E-value=6.6e-07  Score=67.07  Aligned_cols=63  Identities=16%  Similarity=0.157  Sum_probs=37.7

Q ss_pred             EEEEEEeCCCcccccccc----hhhh--------cCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeee
Q psy9621          58 IKLQIWDTAGQERFHTIT----TSYY--------RGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTK  124 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~~----~~~~--------~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~  124 (253)
                      ..+.++||+|...+....    ..+.        ...+-.++|+|.+... ....+..++..+      + +--++.+|.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV------G-LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH------C-CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc------C-CceEEEecc
Confidence            468999999976543211    1111        2456788888887643 344444444443      2 334677999


Q ss_pred             ccc
Q psy9621         125 DTA  127 (253)
Q Consensus       125 D~~  127 (253)
                      |..
T Consensus       162 Det  164 (207)
T d1okkd2         162 DGT  164 (207)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            976

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.35  E-value=2.5e-07  Score=69.75  Aligned_cols=26  Identities=23%  Similarity=0.392  Sum_probs=21.0

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhh
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~   30 (253)
                      +.....-|+++|++||||||-+-+|-
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            34455678999999999999987764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.24  E-value=9.8e-07  Score=66.29  Aligned_cols=26  Identities=19%  Similarity=0.416  Sum_probs=16.0

Q ss_pred             ccCceeEEEEEcCCCCcHHHHHHHhh
Q psy9621           5 TYDFLFKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus         5 ~~~~~~ki~vvG~~~~GKStL~~~l~   30 (253)
                      |.....-|+++|++||||||.+-+|-
T Consensus         8 ~~k~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2           8 PDKIPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             CSSSSEEEEEECSCCC----HHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            33344558889999999999987764

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=7.4e-07  Score=66.89  Aligned_cols=21  Identities=38%  Similarity=0.759  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHhh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~   30 (253)
                      .-|+++|++||||||.+-+|-
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            357889999999999998874

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.11  E-value=1.4e-06  Score=65.28  Aligned_cols=63  Identities=16%  Similarity=0.159  Sum_probs=36.3

Q ss_pred             EEEEEEeCCCcccccccc----hhh--hcCccEEEEEEeCCChhh-HHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          58 IKLQIWDTAGQERFHTIT----TSY--YRGAMGIMLVYDITNEKS-FDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~~----~~~--~~~~d~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ..+.+|||+|........    ..+  ..+.+-.++|.|.+.... ...+..+++.+      + +--++.+|.|..
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~------~-~~~~I~TKlDe~  162 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV------G-VTGLVLTKLDGD  162 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT------C-CCEEEEECGGGC
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC------C-CCeeEEeecCcc
Confidence            468999999986543321    111  235678888988876542 22222222222      1 334777999975

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.06  E-value=1.6e-06  Score=65.48  Aligned_cols=22  Identities=32%  Similarity=0.397  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      ..+|+|++|||||||+|+|...
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTT
T ss_pred             eEEEECCCCCCHHHHHHhhcch
Confidence            5789999999999999999864

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.06  E-value=7.5e-06  Score=61.77  Aligned_cols=47  Identities=17%  Similarity=0.149  Sum_probs=36.9

Q ss_pred             hhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          78 YYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ...+.|.+++|+++.+|+ +...+.+++-....   .++|.+||+||+|+.
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~   54 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLY   54 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGC
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccC
Confidence            456889999999988864 45666677666544   579999999999996

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.91  E-value=1e-06  Score=66.81  Aligned_cols=22  Identities=36%  Similarity=0.610  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      ..+|+|++|||||||+|+|...
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            4689999999999999999864

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.88  E-value=1e-05  Score=63.29  Aligned_cols=113  Identities=14%  Similarity=0.112  Sum_probs=73.0

Q ss_pred             hhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCc
Q psy9621          76 TSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNE  155 (253)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (253)
                      ...+..+|++|+|+|+-+|.+..+  ..+..+.    .+.|+++|+||+|+...                          
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~----~~Kp~IlVlNK~DLv~~--------------------------   57 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRN--PMIEDIL----KNKPRIMLLNKADKADA--------------------------   57 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC----SSSCEEEEEECGGGSCH--------------------------
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH----cCCCeEEEEECccCCch--------------------------
Confidence            456889999999999988765433  2222222    36799999999999611                          


Q ss_pred             cchhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHHHHHHHhc---cCCCCCCC
Q psy9621         156 KSFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIELATAIYDK---TSGRDPLE  232 (253)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~---~~~~~~~~  232 (253)
                                           .     ... ...+..+..+...+.+|+.++.|...+...+...+..+   ........
T Consensus        58 ---------------------~-----~~~-~w~~~f~~~~~~~i~isa~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  110 (273)
T d1puja_          58 ---------------------A-----VTQ-QWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKP  110 (273)
T ss_dssp             ---------------------H-----HHH-HHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             ---------------------H-----HHH-HHHHHHHhcCCccceeecccCCCccccchhhhhhhhhhhhhhhhccCCC
Confidence                                 1     111 11222233457889999999999887777666555433   22333444


Q ss_pred             CCCeEeecCCCCCCC
Q psy9621         233 APDRVTIDKKPDRGG  247 (253)
Q Consensus       233 ~~~~~~~~~~~~~~~  247 (253)
                      ...++-+-..||-||
T Consensus       111 ~~~~v~vvG~PNvGK  125 (273)
T d1puja_         111 RAIRALIIGIPNVGK  125 (273)
T ss_dssp             CCEEEEEEESTTSSH
T ss_pred             CceEEEEEecCccch
Confidence            566777777887774

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.86  E-value=3.6e-06  Score=63.77  Aligned_cols=88  Identities=15%  Similarity=0.104  Sum_probs=60.3

Q ss_pred             hhcCccEEEEEEeCCChh-hHHHHHHHHHHHHHhcccccceeEEeeeeccccccccccccccccccceeeEEEEeccCcc
Q psy9621          78 YYRGAMGIMLVYDITNEK-SFDNILKWLRNIDEHANEDVEKMILGKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEK  156 (253)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (253)
                      ...+.|.+++|+++.+|. ++..+.+++-....   .+++.+||+||+|+..                            
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~----------------------------   55 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIE----------------------------   55 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCC----------------------------
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccc----------------------------
Confidence            456889999999988764 56666676665544   5799999999999972                            


Q ss_pred             chhhHHHHHHhhhhhcCCCchhhhhhccchhHHHHHHHhCCceEEeeccCCCCHHHHHHHH
Q psy9621         157 SFDNILKWLRNIDEHANEDPQVVNSWVCKHRGEAIAREYGVRFMETSAKANINIEKAFIEL  217 (253)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  217 (253)
                                        ..+..   .......+....+|++++.+|++++.|+++|...|
T Consensus        56 ------------------~~~~~---~~~~~~~~~y~~~g~~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          56 ------------------DQDTE---DTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             ------------------CHHHH---HHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGG
T ss_pred             ------------------cHHHH---HHHHHHHHHHhhccccceeeecCChhHHHHHHHhh
Confidence                              11100   00111233445668999999999999988876544

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=0.00015  Score=54.64  Aligned_cols=24  Identities=33%  Similarity=0.423  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      ..=++|-|.-|||||||+++++..
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhc
Confidence            445788999999999999999864

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.73  E-value=6.8e-06  Score=59.66  Aligned_cols=22  Identities=32%  Similarity=0.755  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +||+++|++|+|||||++.+.+
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            5899999999999999999885

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.55  E-value=1.7e-05  Score=57.61  Aligned_cols=23  Identities=13%  Similarity=0.369  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-+|+|.|++|||||||+++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999975

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.49  E-value=2e-05  Score=56.62  Aligned_cols=23  Identities=39%  Similarity=0.553  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..||+|.|+|||||||+.++|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.43  E-value=3.7e-05  Score=55.27  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=21.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...++|+|.|++||||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            3457999999999999999998875

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.39  E-value=3.8e-05  Score=55.81  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +||+|+|+|||||||+...|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988754

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.32  E-value=5.2e-05  Score=55.13  Aligned_cols=22  Identities=27%  Similarity=0.667  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +||+|+|+|||||||+...|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=5.2e-05  Score=54.17  Aligned_cols=21  Identities=33%  Similarity=0.359  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -|+|+|.+|||||||++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999975

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.29  E-value=5.9e-05  Score=54.94  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +||+|+|+|||||||+...|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988874

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=6.6e-05  Score=54.47  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +||+|+|+|||||||+...|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.24  E-value=7.5e-05  Score=54.72  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +.+||+++|+|||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999998864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.23  E-value=9.1e-05  Score=54.38  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=22.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -..+||+|+|+|||||||+..+|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999998875

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.20  E-value=8.4e-05  Score=52.15  Aligned_cols=20  Identities=35%  Similarity=0.468  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      |++.|+||||||||.++|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=8.7e-05  Score=53.93  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+||+|+|+|||||||+...|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999998864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.17  E-value=7.5e-05  Score=54.68  Aligned_cols=23  Identities=17%  Similarity=0.218  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++|+|+|++||||||+...|..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.09  E-value=0.00011  Score=52.56  Aligned_cols=21  Identities=19%  Similarity=0.396  Sum_probs=18.4

Q ss_pred             EE-EEEcCCCCcHHHHHHHhhc
Q psy9621          11 KL-LLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki-~vvG~~~~GKStL~~~l~~   31 (253)
                      || .|+|.+|||||||++++..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            45 5999999999999999874

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.08  E-value=0.00012  Score=52.21  Aligned_cols=21  Identities=29%  Similarity=0.531  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -|+|.|++||||||+.++|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999875

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00012  Score=51.76  Aligned_cols=21  Identities=24%  Similarity=0.567  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +|+|+|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999988865

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00013  Score=52.57  Aligned_cols=21  Identities=38%  Similarity=0.725  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +|++.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999999863

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.03  E-value=0.0002  Score=52.51  Aligned_cols=22  Identities=18%  Similarity=0.293  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..|+|+|+|||||||+.++|..
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4679999999999999998874

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.02  E-value=0.00013  Score=52.18  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .||+++|++||||||+...+..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988753

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00046  Score=53.61  Aligned_cols=64  Identities=17%  Similarity=0.105  Sum_probs=42.5

Q ss_pred             cCceeEEEEEcCCCCcHHHHHHHhhcCCCC--Cc---ccCccceeeEEEEEeeCCeEEEEEEEeCCCccc
Q psy9621           6 YDFLFKLLLIGDSGVGKTCVLFRFSDDAFN--TT---FISTIGIDFKIKTVDLKGKKIKLQIWDTAGQER   70 (253)
Q Consensus         6 ~~~~~ki~vvG~~~~GKStL~~~l~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   70 (253)
                      .++..=|.|+|+.++|||+|+|++.+..+.  ..   ...|.|+-.....+ ..+....+.++||.|...
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccc
Confidence            345567899999999999999999976532  11   22455654432322 234456689999999743

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.98  E-value=0.00016  Score=51.53  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +|+++|++||||||+...+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00012  Score=53.18  Aligned_cols=20  Identities=30%  Similarity=0.574  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      |+|+||+|||||||+++|..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999875

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.95  E-value=0.00019  Score=51.73  Aligned_cols=23  Identities=17%  Similarity=0.193  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..=|+++|.|||||||+..++..
T Consensus        14 p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.88  E-value=0.00023  Score=52.66  Aligned_cols=21  Identities=19%  Similarity=0.403  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      =|+++|.||||||||.++|..
T Consensus         4 li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999874

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.86  E-value=0.00018  Score=52.87  Aligned_cols=20  Identities=20%  Similarity=0.456  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      |+|+|+|||||||+..+|..
T Consensus        11 I~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          11 IFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999998875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.0003  Score=51.44  Aligned_cols=22  Identities=23%  Similarity=0.498  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +.|+|+|+|||||||+..++..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.84  E-value=0.00026  Score=51.07  Aligned_cols=20  Identities=30%  Similarity=0.346  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      |+|.|++||||||++++|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998864

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.00027  Score=51.58  Aligned_cols=21  Identities=29%  Similarity=0.602  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~   32 (253)
                      |+|+|++|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999753

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.80  E-value=0.00031  Score=50.89  Aligned_cols=22  Identities=36%  Similarity=0.593  Sum_probs=18.1

Q ss_pred             eEEE-EEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLL-LIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~-vvG~~~~GKStL~~~l~~   31 (253)
                      +||+ |.|.+||||||+++.|..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            3665 569999999999998864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00034  Score=51.18  Aligned_cols=22  Identities=36%  Similarity=0.632  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      =+++++|+||||||++++.+..
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHH
Confidence            3899999999999999988764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.00034  Score=53.20  Aligned_cols=21  Identities=24%  Similarity=0.373  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +|+|+|++|+|||||++.+.+
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999988875

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.77  E-value=0.00032  Score=50.87  Aligned_cols=21  Identities=33%  Similarity=0.518  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~   32 (253)
                      |+|+|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            689999999999999998753

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.76  E-value=0.00036  Score=49.81  Aligned_cols=20  Identities=35%  Similarity=0.612  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      |++.|++||||||+.+.+..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999988865

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.75  E-value=0.00035  Score=51.63  Aligned_cols=21  Identities=33%  Similarity=0.488  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++++|+.|+|||||++.+.+
T Consensus        29 i~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            478999999999999998876

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00038  Score=51.65  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~   32 (253)
                      |+|+||+|||||||+++++..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            689999999999999999754

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.69  E-value=0.00044  Score=52.63  Aligned_cols=21  Identities=24%  Similarity=0.396  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++++|++|+|||||++.+.+
T Consensus        30 ~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999988875

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00039  Score=49.44  Aligned_cols=20  Identities=35%  Similarity=0.551  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      ++|.|++||||||+.+.|..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56799999999999999874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.66  E-value=0.00044  Score=50.56  Aligned_cols=20  Identities=35%  Similarity=0.612  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      |+|+||+|||||||.++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00045  Score=52.09  Aligned_cols=21  Identities=29%  Similarity=0.540  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++|+.|||||||++.+.+
T Consensus        28 i~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            478999999999999998765

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.65  E-value=0.00057  Score=52.46  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..-|++.|+||+|||||..++..
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34599999999999999999875

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.65  E-value=0.00044  Score=52.06  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++|++|||||||++.+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCcchhhHhccC
Confidence            478999999999999987665

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.64  E-value=0.00048  Score=52.75  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +++++|++|+|||||++.+.+
T Consensus        43 ~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            699999999999999988875

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0005  Score=52.59  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++++|+.|+|||||++.+.+
T Consensus        42 ~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            689999999999999988775

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00049  Score=53.07  Aligned_cols=22  Identities=41%  Similarity=0.542  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      =++++||+||||||+|++.+..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            3899999999999999998764

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.62  E-value=0.00056  Score=48.84  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.-|.++|.+||||||+...|..
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36788999999999999988763

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.62  E-value=0.00049  Score=49.26  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .|+++|++||||||+.+.+..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999988863

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.61  E-value=0.0005  Score=52.01  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++++|+.|+|||||++.+.+-
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            3578999999999999988763

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.59  E-value=0.00075  Score=49.33  Aligned_cols=24  Identities=17%  Similarity=0.326  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..--|+|+|+|||||||+...|..
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999998875

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.56  E-value=0.00058  Score=53.13  Aligned_cols=22  Identities=32%  Similarity=0.563  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++|+|+.|+|||||++.+.+-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5899999999999999988763

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.53  E-value=0.00071  Score=49.16  Aligned_cols=23  Identities=30%  Similarity=0.225  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+=|+|-|++|||||||.++|..
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            55689999999999999999864

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.52  E-value=0.00063  Score=51.46  Aligned_cols=21  Identities=43%  Similarity=0.589  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++|+.|+|||||++.+.+
T Consensus        34 ~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            479999999999999998775

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.51  E-value=0.00045  Score=52.25  Aligned_cols=24  Identities=38%  Similarity=0.520  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..-.+++.||||+||||+.+.+.+
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998875

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.49  E-value=0.00065  Score=48.35  Aligned_cols=20  Identities=25%  Similarity=0.463  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      |+|.|++||||||+.+.|..
T Consensus         6 I~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45559999999999999875

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.48  E-value=0.00048  Score=51.80  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++++|+.|+|||||++.+.+-
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            3789999999999999988863

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.47  E-value=0.0018  Score=45.54  Aligned_cols=25  Identities=28%  Similarity=0.303  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      +..-|++-|+-|||||||++.+...
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhh
Confidence            3446889999999999999998753

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.47  E-value=0.00067  Score=51.50  Aligned_cols=22  Identities=36%  Similarity=0.469  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++++|+.|+|||||++.+.+-
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988863

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.00068  Score=51.34  Aligned_cols=21  Identities=29%  Similarity=0.343  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++|++|||||||++.+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            478999999999999988875

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.45  E-value=0.00087  Score=50.77  Aligned_cols=22  Identities=41%  Similarity=0.401  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -+.++|+.|+|||||++.+.+-
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988864

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.43  E-value=0.00064  Score=51.33  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...++|.||||+||||+.+.+..
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHh
Confidence            34799999999999999998875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.42  E-value=0.00055  Score=52.46  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +++++|++|+|||||++.+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            789999999999999987664

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.42  E-value=0.00076  Score=51.05  Aligned_cols=22  Identities=36%  Similarity=0.499  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++++|+.|+|||||++.+.+-
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5789999999999999988753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.00054  Score=51.75  Aligned_cols=21  Identities=38%  Similarity=0.673  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++|+.|+|||||++.+.+
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            478999999999999998886

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00051  Score=49.93  Aligned_cols=23  Identities=35%  Similarity=0.434  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.-|.+.|.+||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999998864

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.25  E-value=0.039  Score=41.81  Aligned_cols=69  Identities=14%  Similarity=0.095  Sum_probs=41.7

Q ss_pred             EEEEEEeCCCccccccc-chhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcc-cccc-eeEEeeeeccc
Q psy9621          58 IKLQIWDTAGQERFHTI-TTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVE-KMILGKTKDTA  127 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p-~iiv~nK~D~~  127 (253)
                      +.+.++|||+.-..... .......+|.++++.+. +..++..+......+..... .+.+ .-++.|+.+..
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~  187 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA  187 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCC
Confidence            46889999875433222 22334567888877765 56677777666666655442 2333 23677887764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.24  E-value=0.0011  Score=50.78  Aligned_cols=21  Identities=29%  Similarity=0.482  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~   32 (253)
                      ++++|+.|+|||||++.+.+-
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCcHHHHHHHHHCC
Confidence            689999999999999998864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.23  E-value=0.0012  Score=49.14  Aligned_cols=23  Identities=17%  Similarity=0.264  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++|++-|+|||||||+...|..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999988864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.20  E-value=0.0015  Score=49.87  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=21.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...-.++|.|++|+|||++++.+..
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHH
Confidence            3445799999999999999998875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.17  E-value=0.0013  Score=50.47  Aligned_cols=21  Identities=33%  Similarity=0.439  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++|+.|+|||||++.+.+
T Consensus        30 i~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            579999999999999998875

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.16  E-value=0.002  Score=51.04  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .+|+|.|++|||||||++.+...
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            47999999999999999999863

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.15  E-value=0.00068  Score=51.34  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .++++|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5899999999999999988763

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0017  Score=49.18  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..-.+++.|+||+||||++..+..
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999875

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.08  E-value=0.0015  Score=48.99  Aligned_cols=22  Identities=36%  Similarity=0.564  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++.|++|+||||+++.+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3689999999999999998875

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.06  E-value=0.0018  Score=49.20  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...|++.|+||+|||+|++.+..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            45699999999999999999875

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.04  E-value=0.0014  Score=51.59  Aligned_cols=23  Identities=39%  Similarity=0.616  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-.++++||||||||.|.+++..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhh
Confidence            34689999999999999999875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.03  E-value=0.0013  Score=50.56  Aligned_cols=20  Identities=30%  Similarity=0.263  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      +++.|+||+|||++++.+..
T Consensus        49 l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHH
Confidence            45569999999999999875

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.94  E-value=0.0017  Score=49.58  Aligned_cols=21  Identities=19%  Similarity=0.214  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .|+|.|++|+|||||+.++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999998864

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.86  E-value=0.06  Score=41.27  Aligned_cols=69  Identities=14%  Similarity=0.147  Sum_probs=38.3

Q ss_pred             EEEEEEeCCCcccccccchhh-hcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcc-cccce-eEEeeeeccc
Q psy9621          58 IKLQIWDTAGQERFHTITTSY-YRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN-EDVEK-MILGKTKDTA  127 (253)
Q Consensus        58 ~~~~l~Dt~G~~~~~~~~~~~-~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~-iiv~nK~D~~  127 (253)
                      +.+.++|+|+.-......... ...++.++++.. .+..++..+......+..... .+.++ -++.|+.+..
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~  190 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD  190 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcch
Confidence            567899998754332222222 234566666544 456667666666666554432 34443 2677877643

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.81  E-value=0.0019  Score=53.47  Aligned_cols=21  Identities=43%  Similarity=0.763  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ||+++||+|||||-|.+++..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999853

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.81  E-value=0.0022  Score=48.79  Aligned_cols=21  Identities=38%  Similarity=0.591  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .|++.|++|+|||+|++.+..
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            599999999999999999985

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0022  Score=47.40  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      |++.|+|||||||+...|..
T Consensus         6 I~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999999988864

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.73  E-value=0.0017  Score=52.74  Aligned_cols=20  Identities=40%  Similarity=0.732  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhh
Q psy9621          11 KLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~   30 (253)
                      |+++||+||||||+|++.|.
T Consensus        45 n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHH
Confidence            68999999999999996554

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.72  E-value=0.002  Score=48.74  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++.|++|+||||+++.+..
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998865

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.0024  Score=47.79  Aligned_cols=22  Identities=27%  Similarity=0.582  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++.|++|+||||+++.+..
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHH
Confidence            3589999999999999998875

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.63  E-value=0.0027  Score=47.32  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -++++.|++|+||||+++.+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            3689999999999999988764

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0037  Score=46.10  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +-|++-|++|||||||.+.|..
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999998864

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.0032  Score=48.10  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.+++.|+||+|||++++.+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            3599999999999999999875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.59  E-value=0.003  Score=48.34  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.|++.|+||+|||+|++++..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHH
Confidence            4699999999999999998876

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.58  E-value=0.0026  Score=47.41  Aligned_cols=21  Identities=33%  Similarity=0.640  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ++++.|++|+||||++..+..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            689999999999999999875

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.56  E-value=0.0028  Score=46.04  Aligned_cols=23  Identities=39%  Similarity=0.627  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+-|+|-|..||||||+++.|..
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998875

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.33  E-value=0.0045  Score=45.26  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.22  E-value=0.0024  Score=50.74  Aligned_cols=20  Identities=30%  Similarity=0.620  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhh
Q psy9621          11 KLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~   30 (253)
                      +|+++|+||+|||+|++++.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            69999999999999999885

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.16  E-value=0.0051  Score=45.39  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=21.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ....-|.|.|.||||||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3455699999999999999998864

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.15  E-value=0.0075  Score=43.49  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+=|+|.|.+||||||+.+.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46688999999999999988764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.011  Score=43.04  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDA   33 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~   33 (253)
                      =+.|.|+||+|||+|+..+....
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            36899999999999999887543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.02  E-value=0.0051  Score=47.20  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -.|++.|++|+|||+|++++..
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHH
Confidence            3699999999999999999875

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.80  E-value=0.007  Score=45.15  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++|.|+||+|||+|+..+...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999998754

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.79  E-value=0.0016  Score=47.29  Aligned_cols=18  Identities=33%  Similarity=0.591  Sum_probs=16.3

Q ss_pred             EEEcCCCCcHHHHHHHhh
Q psy9621          13 LLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        13 ~vvG~~~~GKStL~~~l~   30 (253)
                      +|+|+.|+|||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999985

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.0075  Score=44.25  Aligned_cols=20  Identities=25%  Similarity=0.345  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999988764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.59  E-value=0.0085  Score=44.95  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      =++|.|+||+|||+|...+...
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999988754

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.57  E-value=0.008  Score=48.23  Aligned_cols=21  Identities=24%  Similarity=0.262  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -+++.||||+|||+|...+.+
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998874

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.0071  Score=45.15  Aligned_cols=21  Identities=19%  Similarity=0.347  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .|+|-|+.||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988765

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.54  E-value=0.011  Score=42.16  Aligned_cols=23  Identities=35%  Similarity=0.631  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .-|++.|++|+||||+.-.+...
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            35899999999999999988764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.47  E-value=0.0085  Score=48.10  Aligned_cols=24  Identities=33%  Similarity=0.458  Sum_probs=20.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +.=+++++||+|||||-|..+|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            445799999999999999998864

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.45  E-value=0.0067  Score=47.18  Aligned_cols=18  Identities=22%  Similarity=0.529  Sum_probs=16.4

Q ss_pred             EEEcCCCCcHHHHHHHhh
Q psy9621          13 LLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        13 ~vvG~~~~GKStL~~~l~   30 (253)
                      +++|+.|+||||+++++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            789999999999999873

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.29  E-value=0.014  Score=41.63  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .=|++.|++|+||||+.-.+...
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            35899999999999999998864

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.27  E-value=0.016  Score=45.50  Aligned_cols=25  Identities=36%  Similarity=0.477  Sum_probs=20.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+.-.++++|++|||||.|...+..
T Consensus        50 ~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          50 KPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             SCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchhHHHHHHHHh
Confidence            3444789999999999999998874

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.27  E-value=0.011  Score=45.62  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..-|.|.|+.|+|||||...+.+
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34578999999999999988764

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.22  E-value=0.012  Score=43.96  Aligned_cols=22  Identities=36%  Similarity=0.674  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      -++|.|+||+|||+|+.++...
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999988743

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.012  Score=43.24  Aligned_cols=20  Identities=20%  Similarity=0.328  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      |+|-|..||||||++..|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999998887754

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.018  Score=44.95  Aligned_cols=24  Identities=17%  Similarity=0.289  Sum_probs=20.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhh
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~   30 (253)
                      ...+=|+|.|++|||||||.+.|.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHH
Confidence            345789999999999999988775

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.08  E-value=0.013  Score=42.88  Aligned_cols=23  Identities=35%  Similarity=0.517  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      +=|+|.|..||||||+.+.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            44789999999999999877643

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.05  E-value=0.014  Score=45.86  Aligned_cols=20  Identities=20%  Similarity=0.499  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      +++.|+||+|||.|.+.+..
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            45579999999999999875

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.92  E-value=0.015  Score=41.12  Aligned_cols=23  Identities=30%  Similarity=0.582  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhcC
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      .-|++.|++|+||||+.-.+...
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            46899999999999999888754

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.75  E-value=0.016  Score=43.08  Aligned_cols=23  Identities=22%  Similarity=0.212  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHhhcCC
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSDDA   33 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~~~   33 (253)
                      =++|.|++|+|||+|+..+....
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999999987543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.018  Score=42.98  Aligned_cols=21  Identities=19%  Similarity=0.123  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      =++|.|+||+|||+|...+..
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999875

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.61  E-value=0.027  Score=43.34  Aligned_cols=24  Identities=17%  Similarity=0.318  Sum_probs=19.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhh
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~   30 (253)
                      ...+=|.|-|.+|||||||...+.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHH
Confidence            345678899999999999998764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=93.49  E-value=0.03  Score=40.78  Aligned_cols=22  Identities=36%  Similarity=0.545  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +=|+|.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999987754

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.45  E-value=0.017  Score=46.73  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=17.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhh
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~   30 (253)
                      .++ +++|+.|+|||+|+.++.
T Consensus        26 ~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEE-EEECSTTSSHHHHHHHHH
T ss_pred             CEE-EEECCCCCCHHHHHHHHH
Confidence            343 588999999999999974

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.40  E-value=0.02  Score=42.62  Aligned_cols=21  Identities=24%  Similarity=0.426  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            478899999999999998874

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.39  E-value=0.018  Score=46.76  Aligned_cols=21  Identities=29%  Similarity=0.582  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~   32 (253)
                      |+|.|++|+||||.++.++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            899999999999999999864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.21  E-value=0.016  Score=42.10  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHhhc
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      --+++.|++++|||+|+..+..
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHH
Confidence            3689999999999999998874

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.07  E-value=0.026  Score=41.29  Aligned_cols=20  Identities=25%  Similarity=0.577  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      +++.|++|+||||++..+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999997654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.07  E-value=0.012  Score=45.34  Aligned_cols=20  Identities=30%  Similarity=0.534  Sum_probs=15.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhh
Q psy9621          11 KLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~   30 (253)
                      =|+|-|.+||||||+.++|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            38999999999999999874

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.05  E-value=0.023  Score=42.45  Aligned_cols=19  Identities=37%  Similarity=0.572  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHhh
Q psy9621          12 LLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~   30 (253)
                      +++.|++|+||||++..+.
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7889999999999998875

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.90  E-value=0.027  Score=41.49  Aligned_cols=20  Identities=40%  Similarity=0.574  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHHHHHhh
Q psy9621          11 KLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~   30 (253)
                      -++|.|++|+|||+|...+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46889999999999987764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.81  E-value=0.019  Score=44.23  Aligned_cols=18  Identities=33%  Similarity=0.475  Sum_probs=14.4

Q ss_pred             EEEEEcCCCCcHHHH-HHH
Q psy9621          11 KLLLIGDSGVGKTCV-LFR   28 (253)
Q Consensus        11 ki~vvG~~~~GKStL-~~~   28 (253)
                      .++|+|.||+||||. +++
T Consensus        16 ~~lI~g~aGTGKTt~l~~r   34 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNK   34 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHH
Confidence            378999999999975 444

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.79  E-value=0.028  Score=41.34  Aligned_cols=20  Identities=30%  Similarity=0.559  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      +.+.|++|+|||-|++++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999999875

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.77  E-value=0.034  Score=43.81  Aligned_cols=24  Identities=21%  Similarity=0.311  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ..++|.|=|.-|+||||+++.|..
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHS
T ss_pred             ceEEEEEECCccCCHHHHHHHHHH
Confidence            468999999999999999998875

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.72  E-value=0.026  Score=44.46  Aligned_cols=25  Identities=28%  Similarity=0.418  Sum_probs=21.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhcC
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~~   32 (253)
                      ..++|.|=|.-||||||+++.+...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999999998753

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.68  E-value=0.03  Score=41.19  Aligned_cols=20  Identities=25%  Similarity=0.217  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      |+|=|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999988764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.57  E-value=0.025  Score=43.97  Aligned_cols=16  Identities=50%  Similarity=0.781  Sum_probs=13.5

Q ss_pred             EEEEEcCCCCcHHHHH
Q psy9621          11 KLLLIGDSGVGKTCVL   26 (253)
Q Consensus        11 ki~vvG~~~~GKStL~   26 (253)
                      .++|.|.||+||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3789999999999654

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.45  E-value=0.034  Score=43.69  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .++|.|=|.-|+||||+++.|..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            57899999999999999998864

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.42  E-value=0.029  Score=45.65  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .-+++|+|.+|+|||+++..++.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            45799999999999999877764

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.13  E-value=0.037  Score=42.10  Aligned_cols=20  Identities=20%  Similarity=0.388  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      ++|.|.||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            68999999999999888763

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.77  E-value=0.048  Score=41.94  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      |++++|++|+|||+|+..+..
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHH
Confidence            899999999999999988764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.61  E-value=0.045  Score=41.45  Aligned_cols=19  Identities=21%  Similarity=0.455  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHHHHHhh
Q psy9621          12 LLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~   30 (253)
                      ++|.|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5689999999999997764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.41  E-value=0.065  Score=41.84  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=20.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           7 DFLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         7 ~~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .+.-.++++|++|+|||.|...+..
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchHHHHHHHHHH
Confidence            3344678999999999999988764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.54  E-value=0.2  Score=34.77  Aligned_cols=51  Identities=29%  Similarity=0.610  Sum_probs=43.0

Q ss_pred             eeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhc
Q psy9621         122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA  172 (253)
Q Consensus       122 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (253)
                      .-.|..++.....+...++..+.+++++++.++.++|+++..|+.++.+..
T Consensus        55 ~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~  105 (170)
T d1i2ma_          55 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC  105 (170)
T ss_dssp             EEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH
T ss_pred             cccccccccccceecchhcccccchhhccccccccccchhHHHHHHHhhcc
Confidence            345777777777788889999999999999999999999999998765543

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=90.52  E-value=0.071  Score=39.54  Aligned_cols=21  Identities=19%  Similarity=0.116  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      -|++.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378889999999999988854

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.14  E-value=0.078  Score=42.18  Aligned_cols=19  Identities=26%  Similarity=0.497  Sum_probs=15.8

Q ss_pred             EEEEEcCCCCcHHHHHHHh
Q psy9621          11 KLLLIGDSGVGKTCVLFRF   29 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l   29 (253)
                      -++|.|+||+|||+++.++
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4788999999999987553

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=89.94  E-value=0.085  Score=40.09  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      .--+++.|++++|||+|++.+..
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHH
Confidence            44678899999999999998875

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=89.18  E-value=0.046  Score=37.21  Aligned_cols=18  Identities=28%  Similarity=0.451  Sum_probs=14.1

Q ss_pred             EEEcCCCCcHHH-HHHHhh
Q psy9621          13 LLIGDSGVGKTC-VLFRFS   30 (253)
Q Consensus        13 ~vvG~~~~GKSt-L~~~l~   30 (253)
                      +++|+=.||||| |++++.
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            568999999999 665543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.67  E-value=0.19  Score=34.75  Aligned_cols=49  Identities=14%  Similarity=0.140  Sum_probs=36.3

Q ss_pred             eccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhc
Q psy9621         124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA  172 (253)
Q Consensus       124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (253)
                      .|..++.....+...++..+.+++++++.++..+|+++..|+.++....
T Consensus        53 ~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~  101 (168)
T d2gjsa1          53 YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR  101 (168)
T ss_dssp             EECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHC
T ss_pred             eecccccccceecccchhhhhhhceeccccccccccccccccchhhccc
Confidence            4677776666677778889999999999999999999999999876654

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.59  E-value=0.14  Score=39.04  Aligned_cols=21  Identities=38%  Similarity=0.725  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      |++++|++|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHH
Confidence            799999999999999888864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=88.46  E-value=0.13  Score=38.99  Aligned_cols=20  Identities=20%  Similarity=0.341  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      +.|.|++|+|||||+-.+..
T Consensus        57 tei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999988764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.42  E-value=0.2  Score=34.76  Aligned_cols=52  Identities=31%  Similarity=0.526  Sum_probs=44.1

Q ss_pred             eeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhc
Q psy9621         121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA  172 (253)
Q Consensus       121 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (253)
                      .+-.|..++......+..++..+.++++.++.++.++|+++..|..++.+..
T Consensus        54 ~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~  105 (169)
T d1x1ra1          54 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK  105 (169)
T ss_dssp             EEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred             ccccccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhc
Confidence            3456888888888888888999999999999999999999999998776554

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.38  E-value=1.1  Score=32.28  Aligned_cols=66  Identities=9%  Similarity=0.036  Sum_probs=45.4

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhccccccee-EEeeeecccc
Q psy9621          57 KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKM-ILGKTKDTAG  128 (253)
Q Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~D~~~  128 (253)
                      .+.+.++|+++...  ......+..+|.++++...+ ..++....+....+.+   .++|++ ++.|+.+...
T Consensus       111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~---~~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK---AGLAILGFVLNRYGRSD  177 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH---TTCEEEEEEEEEETSCT
T ss_pred             cCCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhh---hhhhhhhhhhccccccc
Confidence            35688999997643  23444567899999998754 6666666666655544   456765 7889998653

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.43  E-value=0.2  Score=37.47  Aligned_cols=23  Identities=35%  Similarity=0.481  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           9 LFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         9 ~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      ...|++.|.+|+||+.+.+.+..
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHH
Confidence            34689999999999999988864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.25  E-value=0.61  Score=31.87  Aligned_cols=49  Identities=31%  Similarity=0.445  Sum_probs=42.7

Q ss_pred             eccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhc
Q psy9621         124 KDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA  172 (253)
Q Consensus       124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (253)
                      .|..+....+.++..++..+.++++.++.++.++|+.+..|+.++.+..
T Consensus        57 ~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~  105 (167)
T d1xtqa1          57 VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV  105 (167)
T ss_dssp             EECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcc
Confidence            5777777777888889999999999999999999999999999876654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.01  E-value=0.32  Score=33.84  Aligned_cols=49  Identities=24%  Similarity=0.331  Sum_probs=40.9

Q ss_pred             eeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhh
Q psy9621         123 TKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH  171 (253)
Q Consensus       123 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (253)
                      -.|.+++.....+...++..+.+++++++.++.++|+++..|..+....
T Consensus        54 i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~  102 (177)
T d1kmqa_          54 LWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH  102 (177)
T ss_dssp             EEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             ccccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHH
Confidence            3688888888888889999999999999999999999987765544443

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.63  E-value=1.4  Score=29.17  Aligned_cols=43  Identities=9%  Similarity=0.114  Sum_probs=26.8

Q ss_pred             hhcCccEEEEEEeCCChhhHHHHHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          78 YYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      .....|.+++    +.-.-|..+..+...+..   .++++++.|-..|-.
T Consensus        70 ~~~~~d~I~I----DEaQFf~dl~~~~~~~~~---~~~~Viv~GLd~Df~  112 (133)
T d1xbta1          70 EALGVAVIGI----DEGQFFPDIVEFCEAMAN---AGKTVIVAALDGTFQ  112 (133)
T ss_dssp             HHHTCSEEEE----SSGGGCTTHHHHHHHHHH---TTCEEEEECCSBCTT
T ss_pred             hhcccceEEe----ehhHHHHHHHHHHHHHHh---cCCcEEEEEeccccc
Confidence            3456665333    444445555555555543   579999999988865

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=85.15  E-value=0.25  Score=32.80  Aligned_cols=21  Identities=19%  Similarity=0.060  Sum_probs=17.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHhh
Q psy9621          10 FKLLLIGDSGVGKTCVLFRFS   30 (253)
Q Consensus        10 ~ki~vvG~~~~GKStL~~~l~   30 (253)
                      -..+|.+++|+|||+++-.+.
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHH
Confidence            356789999999999886654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=85.03  E-value=0.17  Score=38.99  Aligned_cols=15  Identities=40%  Similarity=0.567  Sum_probs=13.4

Q ss_pred             EEEcCCCCcHHHHHH
Q psy9621          13 LLIGDSGVGKTCVLF   27 (253)
Q Consensus        13 ~vvG~~~~GKStL~~   27 (253)
                      ++.|.+|+|||||-.
T Consensus        18 lfFGLSGTGKTTLs~   32 (313)
T d2olra1          18 VFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEECSTTSSHHHHHC
T ss_pred             EEEccCCCCccccee
Confidence            799999999999773

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.01  E-value=0.62  Score=32.60  Aligned_cols=50  Identities=22%  Similarity=0.241  Sum_probs=41.1

Q ss_pred             eeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhh
Q psy9621         121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDE  170 (253)
Q Consensus       121 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (253)
                      ++-.|..+++....+...++..+.+++++++.++.++|++...|.....+
T Consensus        59 l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~  108 (185)
T d2atxa1          59 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK  108 (185)
T ss_dssp             EEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             eecccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHH
Confidence            35569999988888888999999999999999999999988655554433

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=84.78  E-value=0.18  Score=39.04  Aligned_cols=16  Identities=38%  Similarity=0.507  Sum_probs=14.0

Q ss_pred             EEEEcCCCCcHHHHHH
Q psy9621          12 LLLIGDSGVGKTCVLF   27 (253)
Q Consensus        12 i~vvG~~~~GKStL~~   27 (253)
                      -++.|.+|+|||||-.
T Consensus        17 alffGLSGTGKTTLs~   32 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEECTTSCHHHHTC
T ss_pred             EEEEccCCCCcccccc
Confidence            4899999999999764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.63  E-value=0.63  Score=31.73  Aligned_cols=51  Identities=41%  Similarity=0.717  Sum_probs=42.3

Q ss_pred             eeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhcC
Q psy9621         123 TKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHAN  173 (253)
Q Consensus       123 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (253)
                      -.|..++.....+...++..+.+++++++.++..+|+++..|++++.+...
T Consensus        55 i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~  105 (164)
T d1z2aa1          55 LWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG  105 (164)
T ss_dssp             EECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC
T ss_pred             eeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccCC
Confidence            447777777777777788999999999999999999999999998766543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.55  E-value=0.61  Score=32.78  Aligned_cols=50  Identities=22%  Similarity=0.306  Sum_probs=41.4

Q ss_pred             eeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhh
Q psy9621         122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEH  171 (253)
Q Consensus       122 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (253)
                      +-.|..++.....+...++..+.+++++|+.++.++|+++..|..+....
T Consensus        54 ~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~  103 (191)
T d2ngra_          54 GLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH  103 (191)
T ss_dssp             EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             eccccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhh
Confidence            44688888888888888999999999999999999999998755544443

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.14  E-value=0.22  Score=38.07  Aligned_cols=21  Identities=33%  Similarity=0.445  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHhhc
Q psy9621          11 KLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        11 ki~vvG~~~~GKStL~~~l~~   31 (253)
                      |++++|.+|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHH
Confidence            789999999999999877764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.79  E-value=0.39  Score=32.99  Aligned_cols=52  Identities=29%  Similarity=0.478  Sum_probs=43.6

Q ss_pred             eeeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhc
Q psy9621         121 GKTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA  172 (253)
Q Consensus       121 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (253)
                      ..-.|..++......+..++..+.++++.++.++..+|+++..|+..+.+..
T Consensus        53 ~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~  104 (167)
T d1c1ya_          53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK  104 (167)
T ss_dssp             EEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred             eccccccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhc
Confidence            3445777777777777888999999999999999999999999999876654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=83.54  E-value=0.98  Score=31.54  Aligned_cols=51  Identities=10%  Similarity=0.128  Sum_probs=32.8

Q ss_pred             hhhcCccEEEEEEeCCChhh---HHH-------HHHHHHHHHHhcccccceeEEeeeeccc
Q psy9621          77 SYYRGAMGIMLVYDITNEKS---FDN-------ILKWLRNIDEHANEDVEKMILGKTKDTA  127 (253)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s---~~~-------~~~~~~~i~~~~~~~~p~iiv~nK~D~~  127 (253)
                      ..+.++|++|++........   .+.       +..+.+.+.++..++.-+++++|=.|.-
T Consensus        96 ~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~  156 (175)
T d7mdha1          96 EVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTN  156 (175)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH
T ss_pred             hhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHH
Confidence            45789999999876553221   111       2345555666665677788999988864

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.45  E-value=0.23  Score=38.49  Aligned_cols=16  Identities=38%  Similarity=0.503  Sum_probs=14.0

Q ss_pred             EEEEcCCCCcHHHHHH
Q psy9621          12 LLLIGDSGVGKTCVLF   27 (253)
Q Consensus        12 i~vvG~~~~GKStL~~   27 (253)
                      -++.|.+|+|||||-.
T Consensus        17 alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             EEEECCTTSSHHHHHC
T ss_pred             EEEEccCCCCccccee
Confidence            3699999999999983

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.13  E-value=0.63  Score=31.66  Aligned_cols=51  Identities=41%  Similarity=0.729  Sum_probs=43.3

Q ss_pred             eeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhc
Q psy9621         122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA  172 (253)
Q Consensus       122 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (253)
                      +-.|..+++..+.....++..+.+++++++.++..+|+++..|+.++....
T Consensus        52 ~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~  102 (164)
T d1yzqa1          52 QLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER  102 (164)
T ss_dssp             EEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred             eecccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhc
Confidence            345777777777778889999999999999999999999999998766554

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.01  E-value=0.61  Score=31.91  Aligned_cols=50  Identities=46%  Similarity=0.870  Sum_probs=36.7

Q ss_pred             eeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhc
Q psy9621         123 TKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA  172 (253)
Q Consensus       123 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (253)
                      -.|..++...+.+...++..+.+++++++.++.++|+++..|+..+....
T Consensus        56 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~  105 (167)
T d1z08a1          56 IWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML  105 (167)
T ss_dssp             EEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred             eeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhccccc
Confidence            45777777777788888999999999999999999999999988665543

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.90  E-value=0.44  Score=32.86  Aligned_cols=50  Identities=50%  Similarity=0.810  Sum_probs=35.0

Q ss_pred             eeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhc
Q psy9621         123 TKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA  172 (253)
Q Consensus       123 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (253)
                      -.|..+++........+...+.++++.++.++..+|+.+..|++++.+..
T Consensus        56 ~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~  105 (175)
T d1ky3a_          56 VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA  105 (175)
T ss_dssp             EECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred             eeccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhh
Confidence            34667777777777788999999999999999999999999999887664

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.35  E-value=0.47  Score=31.02  Aligned_cols=24  Identities=13%  Similarity=0.091  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHhhc
Q psy9621           8 FLFKLLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus         8 ~~~ki~vvG~~~~GKStL~~~l~~   31 (253)
                      +-+.|.+-|..|+|||||.+.|..
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHH
Confidence            457899999999999999999864

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.27  E-value=0.42  Score=33.72  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHhhcC
Q psy9621          12 LLLIGDSGVGKTCVLFRFSDD   32 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~~   32 (253)
                      |+|+|...+|||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998754

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.23  E-value=0.2  Score=37.80  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=16.6

Q ss_pred             CceeEEEEE-cCCCCcHHHHHHHh
Q psy9621           7 DFLFKLLLI-GDSGVGKTCVLFRF   29 (253)
Q Consensus         7 ~~~~ki~vv-G~~~~GKStL~~~l   29 (253)
                      +..-+|+++ |.-||||||+.-.|
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHH
Confidence            344466665 99999999986544

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.96  E-value=0.39  Score=36.27  Aligned_cols=20  Identities=25%  Similarity=0.345  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      +.+.|++++|||+|+..+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999877763

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.91  E-value=0.93  Score=31.13  Aligned_cols=51  Identities=51%  Similarity=0.946  Sum_probs=43.7

Q ss_pred             eeeccccccccccccccccccceeeEEEEeccCccchhhHHHHHHhhhhhc
Q psy9621         122 KTKDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNILKWLRNIDEHA  172 (253)
Q Consensus       122 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (253)
                      +-.|..++.....+...+...+.++++.++.++.++|+.+..|..++.+..
T Consensus        55 ~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~  105 (173)
T d2a5ja1          55 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS  105 (173)
T ss_dssp             EEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS
T ss_pred             EeecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhC
Confidence            345888888888888888999999999999999999999999998776544

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=81.27  E-value=0.43  Score=36.02  Aligned_cols=20  Identities=20%  Similarity=0.247  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHhhc
Q psy9621          12 LLLIGDSGVGKTCVLFRFSD   31 (253)
Q Consensus        12 i~vvG~~~~GKStL~~~l~~   31 (253)
                      +.+.|++++|||+|+..+..
T Consensus        60 tei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHH
Confidence            56899999999999988764