Psyllid ID: psy9625

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
MLTQSRRADTGVKLEVNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLVDESADDLDIASLSLHQARRLEMEAQVRVLELEAGLEKERLKLSALRRHHLLKKKIVYLALFQEIRDAPKLRAILTVEVSVVFGRHRQFPTHNTLPDRPF
ccccccccccccccHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHEEEEEccccccccccccccccc
ccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHEHHHHHHHHHHHHHHHHcccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEEEccccccccccccccccc
mltqsrradtgvklEVNEKILDSCTTLMKAIRILVqkspddldIASLSLHQARRLEMEAQAEIIMAhhgsasntreFYKRNHQWTEGLISAAKAVAMSAKYLLTAADqvvsggegaKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAEIIMAhhgsasntreFYKRNHQWTEGLISAAKAVAMSAKYLLTAADqvvsggegaKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLVDESADDLDIASLSLHQARRLEMEAQVRVLELEAGLEKERLKLSALRRHHLLKKKIVYLALFQEIRDAPKLRAILTVEVSVVfgrhrqfpthntlpdrpf
mltqsrradtgvklevnekiLDSCTTLMKAIRILvqkspddlDIASLSLHQARRLEMEAQAEIIMAhhgsasntrEFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAalsqasrdvtnATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAalsqasrdvtnATGSVVATAKTCIHLVDESADDLDIASLSLHQARRLEMEAQVRVLELEAGLEKERLKLSALRRHHLLKKKIVYLALFQEIRDAPKLRAILTVEVSvvfgrhrqfpthntlpdrpf
MLTQSRRADTGVKLEVNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLVDESADDLDIASLSLHQARRLEMEAQVRVLELEAGLEKERLKLSALRRHHLLKKKIVYLALFQEIRDAPKLRAILTVEVSVVFGRHRQFPTHNTLPDRPF
************KLEVNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLVDESADDLDIASLSLHQARRLEMEAQVRVLELEAGLEKERLKLSALRRHHLLKKKIVYLALFQEIRDAPKLRAILTVEVSVVFGRHRQ************
***************VNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEA****************************LISAAKAVAMSAKYLLTAA*****************ASH*****************************ASRDVTNATGSVVATAKT*************************HQWTEGLISAAKAVAMSAKYLLTAADQV************IVASHGVAASTAQLVV*********************DVTNATGSVVA*********************SLHQARRLEME*****L*********RL*LSALRRHHLL***********************TVEVSVVFGRHRQFP**********
*********TGVKLEVNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLVDESADDLDIASLSLHQARRLEMEAQVRVLELEAGLEKERLKLSALRRHHLLKKKIVYLALFQEIRDAPKLRAILTVEVSVVFGRHRQFPTHNTLPDRPF
*********TGVKLEVNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLVDESADDLDIASLSLHQARRLEMEAQVRVLELEAGLEKERLKLSALRRHHLLKKKIVYLALFQEIRDAPKLRAILTVEVSVVFGRHRQFPTHNTL*****
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MLTQSRRADTGVKLEVNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLVDESADDLDIASLSLHQARRLEMEAQVRVLELEAGLEKERLKLSALRRHHLLKKKIVYLALFQEIRDAPKLRAILTVEVSVVFGRHRQFPTHNTLPDRPF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query394 2.2.26 [Sep-21-2011]
O002911037 Huntingtin-interacting pr yes N/A 0.411 0.156 0.518 1e-36
Q02328927 Huntington interacting pr yes N/A 0.408 0.173 0.532 3e-35
Q8VD751029 Huntingtin-interacting pr yes N/A 0.411 0.157 0.506 4e-35
Q9JKY51068 Huntingtin-interacting pr no N/A 0.385 0.142 0.491 2e-33
O751461068 Huntingtin-interacting pr no N/A 0.385 0.142 0.497 4e-33
Q9P6L51102 Endocytosis protein end4 yes N/A 0.477 0.170 0.415 3e-22
Q54K81 2614 Talin-B OS=Dictyostelium yes N/A 0.459 0.069 0.373 5e-22
P33338968 Protein SLA2 OS=Saccharom yes N/A 0.378 0.153 0.423 6e-20
P0CE952492 Talin-A OS=Dictyostelium no N/A 0.380 0.060 0.358 1e-10
P260392541 Talin-1 OS=Mus musculus G no N/A 0.390 0.060 0.335 1e-10
>sp|O00291|HIP1_HUMAN Huntingtin-interacting protein 1 OS=Homo sapiens GN=HIP1 PE=1 SV=5 Back     alignment and function desciption
 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/166 (51%), Positives = 117/166 (70%), Gaps = 4/166 (2%)

Query: 179  EIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERL 238
            EI+ +  G+AS  +EFY +N +WTEGLISA+KAV   A  ++ AAD VV G    K E L
Sbjct: 847  EIVESGRGTAS-PKEFYAKNSRWTEGLISASKAVGWGATVMVDAADLVVQGR--GKFEEL 903

Query: 239  IVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLVDES 298
            +V SH +AASTAQLV AS+VKA+++S +LA L QASR V  AT  VVA+  +    ++E+
Sbjct: 904  MVCSHEIAASTAQLVAASKVKADKDSPNLAQLQQASRGVNQATAGVVASTISGKSQIEET 963

Query: 299  ADDLDIASLSLHQARRLEMEAQVRVLELEAGLEKERLKLSALRRHH 344
             D++D +S++L Q +R EM++QVRVLELE  L+KER KL  LR+ H
Sbjct: 964  -DNMDFSSMTLTQIKRQEMDSQVRVLELENELQKERQKLGELRKKH 1008
Plays a role in clathrin-mediated endocytosis and trafficking. Involved in regulating AMPA receptor trafficking in the central nervous system in an NMDA-dependent manner. Enhances androgen receptor (AR)-mediated transcription. May act as a proapoptotic protein that induces cell death by acting through the intrinsic apoptosis pathway. Binds 3-phosphoinositides (via ENTH domain). May act through the ENTH domain to promote cell survival by stabilizing receptor tyrosine kinases following ligand-induced endocytosis. May play a functional role in the cell filament networks. May be required for differentiation, proliferation, and/or survival of somatic and germline progenitors.
Homo sapiens (taxid: 9606)
>sp|Q02328|SLAP2_CAEEL Huntington interacting protein related 1 OS=Caenorhabditis elegans GN=hipr-1 PE=3 SV=3 Back     alignment and function description
>sp|Q8VD75|HIP1_MOUSE Huntingtin-interacting protein 1 OS=Mus musculus GN=Hip1 PE=1 SV=2 Back     alignment and function description
>sp|Q9JKY5|HIP1R_MOUSE Huntingtin-interacting protein 1-related protein OS=Mus musculus GN=Hip1r PE=1 SV=2 Back     alignment and function description
>sp|O75146|HIP1R_HUMAN Huntingtin-interacting protein 1-related protein OS=Homo sapiens GN=HIP1R PE=1 SV=2 Back     alignment and function description
>sp|Q9P6L5|SLA2_SCHPO Endocytosis protein end4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=end4 PE=1 SV=2 Back     alignment and function description
>sp|Q54K81|TALB_DICDI Talin-B OS=Dictyostelium discoideum GN=talB PE=2 SV=1 Back     alignment and function description
>sp|P33338|SLA2_YEAST Protein SLA2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SLA2 PE=1 SV=5 Back     alignment and function description
>sp|P0CE95|TALA1_DICDI Talin-A OS=Dictyostelium discoideum GN=talA PE=1 SV=1 Back     alignment and function description
>sp|P26039|TLN1_MOUSE Talin-1 OS=Mus musculus GN=Tln1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query394
383856681 958 PREDICTED: huntingtin-interacting protei 0.413 0.170 0.730 2e-57
340709429 957 PREDICTED: huntingtin-interacting protei 0.413 0.170 0.724 3e-56
350407119 957 PREDICTED: huntingtin-interacting protei 0.413 0.170 0.724 3e-56
328792678 958 PREDICTED: huntingtin-interacting protei 0.413 0.170 0.718 3e-56
380023499 958 PREDICTED: huntingtin-interacting protei 0.413 0.170 0.712 7e-56
307180268 907 Huntingtin-interacting protein 1 [Campon 0.411 0.178 0.698 7e-56
345481800 967 PREDICTED: huntingtin-interacting protei 0.411 0.167 0.710 2e-55
345481802 955 PREDICTED: huntingtin-interacting protei 0.411 0.169 0.710 2e-55
307207937 959 Huntingtin-interacting protein 1 [Harpeg 0.411 0.168 0.698 3e-55
332018143 892 Huntingtin-interacting protein 1 [Acromy 0.411 0.181 0.680 3e-54
>gi|383856681|ref|XP_003703836.1| PREDICTED: huntingtin-interacting protein 1 [Megachile rotundata] Back     alignment and taxonomy information
 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 122/167 (73%), Positives = 140/167 (83%), Gaps = 4/167 (2%)

Query: 178 AEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLER 237
           AEI+    G+A+ T EFYKRNHQW+EGLISAAKAVAM A  LL AAD+VVSG    K E+
Sbjct: 788 AEIVDQGKGTATAT-EFYKRNHQWSEGLISAAKAVAMGANLLLEAADKVVSGN--GKFEQ 844

Query: 238 LIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLVDE 297
           L+VAS G+AA+TAQLVVASRVKA RNS +LAALS+ASRDVT ATGSVVATAK C  LV+E
Sbjct: 845 LMVASQGIAATTAQLVVASRVKANRNSTNLAALSEASRDVTQATGSVVATAKNCSQLVEE 904

Query: 298 SADDLDIASLSLHQARRLEMEAQVRVLELEAGLEKERLKLSALRRHH 344
           + DDLDI+ LSLHQA+RLEMEAQVRVLELE  LE ERL+L+ALRR+H
Sbjct: 905 N-DDLDISGLSLHQAKRLEMEAQVRVLELEQALETERLRLAALRRYH 950

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340709429|ref|XP_003393312.1| PREDICTED: huntingtin-interacting protein 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350407119|ref|XP_003487991.1| PREDICTED: huntingtin-interacting protein 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|328792678|ref|XP_394258.4| PREDICTED: huntingtin-interacting protein 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|380023499|ref|XP_003695558.1| PREDICTED: huntingtin-interacting protein 1 [Apis florea] Back     alignment and taxonomy information
>gi|307180268|gb|EFN68301.1| Huntingtin-interacting protein 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|345481800|ref|XP_001604846.2| PREDICTED: huntingtin-interacting protein 1 isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|345481802|ref|XP_003424458.1| PREDICTED: huntingtin-interacting protein 1 isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307207937|gb|EFN85496.1| Huntingtin-interacting protein 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332018143|gb|EGI58752.1| Huntingtin-interacting protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query394
RGD|620305230 Hip1 "huntingtin interacting p 0.411 0.704 0.518 5.1e-35
FB|FBgn00363091124 Hip1 "Huntingtin interacting p 0.565 0.198 0.375 7.9e-35
UNIPROTKB|E1C6I01010 HIP1 "Uncharacterized protein" 0.411 0.160 0.524 1.7e-34
UNIPROTKB|E1C5D51037 HIP1 "Uncharacterized protein" 0.411 0.156 0.524 1.8e-34
UNIPROTKB|F1PB24981 HIP1 "Uncharacterized protein" 0.563 0.226 0.421 2.1e-34
UNIPROTKB|J9PA311000 HIP1 "Uncharacterized protein" 0.563 0.222 0.421 2.2e-34
UNIPROTKB|F1MWF01037 HIP1 "Uncharacterized protein" 0.563 0.214 0.429 2.3e-34
UNIPROTKB|G3V8Y81030 Hip1 "Protein Hip1" [Rattus no 0.563 0.215 0.416 2.9e-34
ZFIN|ZDB-GENE-010328-151048 hip1 "huntingtin interacting p 0.502 0.188 0.456 3e-34
UNIPROTKB|O002911037 HIP1 "Huntingtin-interacting p 0.411 0.156 0.524 4.9e-34
RGD|620305 Hip1 "huntingtin interacting protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 86/166 (51%), Positives = 117/166 (70%)

Query:   179 EIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERL 238
             EI+ +  G+AS  +EFY +N +WTEGLISA+KAV   A  ++ AAD VV G +G K E L
Sbjct:    40 EIVESGRGTAS-PKEFYAKNSRWTEGLISASKAVGWGATIMVDAADLVVQG-KG-KFEEL 96

Query:   239 IVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLVDES 298
             +V SH +AASTAQLV AS+VKA + S++L  L QASR V  AT +VVA+  +    ++E+
Sbjct:    97 MVCSHEIAASTAQLVAASKVKANKGSLNLTQLQQASRGVNQATAAVVASTISGKSQIEET 156

Query:   299 ADDLDIASLSLHQARRLEMEAQVRVLELEAGLEKERLKLSALRRHH 344
              D +D +S++L Q +R EM++QVRVLELE  L+KER KL  LR+ H
Sbjct:   157 -DSMDFSSMTLTQIKRQEMDSQVRVLELENDLQKERQKLGELRKKH 201
GO:0005737 "cytoplasm" evidence=ISO
GO:0005794 "Golgi apparatus" evidence=ISO
GO:0006897 "endocytosis" evidence=ISO;TAS
GO:0006915 "apoptotic process" evidence=ISO
GO:0006917 "induction of apoptosis" evidence=ISO
GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO
GO:0016021 "integral to membrane" evidence=TAS
GO:0030118 "clathrin coat" evidence=TAS
GO:0030136 "clathrin-coated vesicle" evidence=ISO
GO:0030276 "clathrin binding" evidence=ISO;IDA
GO:0035091 "phosphatidylinositol binding" evidence=ISO
GO:0042981 "regulation of apoptotic process" evidence=ISO
GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO
GO:0048260 "positive regulation of receptor-mediated endocytosis" evidence=ISO
GO:0048268 "clathrin coat assembly" evidence=ISO;IDA
FB|FBgn0036309 Hip1 "Huntingtin interacting protein 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1C6I0 HIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C5D5 HIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PB24 HIP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9PA31 HIP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MWF0 HIP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G3V8Y8 Hip1 "Protein Hip1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010328-15 hip1 "huntingtin interacting protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O00291 HIP1 "Huntingtin-interacting protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q02328SLAP2_CAEELNo assigned EC number0.53290.40860.1736yesN/A
Q8VD75HIP1_MOUSENo assigned EC number0.50600.41110.1574yesN/A
O00291HIP1_HUMANNo assigned EC number0.51800.41110.1562yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
pfam01608194 pfam01608, I_LWEQ, I/LWEQ domain 4e-62
smart00307200 smart00307, ILWEQ, I/LWEQ domain 2e-50
pfam01608194 pfam01608, I_LWEQ, I/LWEQ domain 6e-48
smart00307200 smart00307, ILWEQ, I/LWEQ domain 3e-40
>gnl|CDD|201885 pfam01608, I_LWEQ, I/LWEQ domain Back     alignment and domain information 
 Score =  197 bits (504), Expect = 4e-62
 Identities = 91/193 (47%), Positives = 124/193 (64%), Gaps = 6/193 (3%)

Query: 152 ALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKA 211
           A+ +A++ +T+A  ++V  A       EI+    GSAS T EFYK+N +WTEGLISAAKA
Sbjct: 4   AILEAAKAITDAVAALVKAATAAQR--EIVAQGKGSASRT-EFYKKNSRWTEGLISAAKA 60

Query: 212 VAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLAALS 271
           VA +   L+ AAD VV G      E LIVAS+ VAASTAQLV ASRVKA+ NS     L 
Sbjct: 61  VAGATNILVEAADGVVQGT--GSEEELIVASNEVAASTAQLVAASRVKADFNSKAQDRLE 118

Query: 272 QASRDVTNATGSVVATAKTCIHLVDESADDLDIASLSLHQARRLEMEAQVRVLELEAGLE 331
            AS+ VTNA  ++VA  K  +   +E  +D+D++ L+LH+ +  EME QV +L+LE  LE
Sbjct: 119 AASKAVTNACKALVAAVKQGL-EKEEDQEDVDLSKLTLHEGKTQEMEQQVEILKLENELE 177

Query: 332 KERLKLSALRRHH 344
           + R +L  +R+ H
Sbjct: 178 EARKRLGEIRKAH 190

I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin and yeast Sla2p interact with F-actin. I/LWEQ domains can be placed into four major groups based on sequence similarity: (1) Metazoan talin; (2) Dictyostelium TalA/TalB and SLA110; (3) metazoan Hip1p; and (4) yeast Sla2p. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks. Length = 194
>gnl|CDD|214607 smart00307, ILWEQ, I/LWEQ domain Back     alignment and domain information
>gnl|CDD|201885 pfam01608, I_LWEQ, I/LWEQ domain Back     alignment and domain information
>gnl|CDD|214607 smart00307, ILWEQ, I/LWEQ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 394
KOG0980|consensus980 100.0
smart00307200 ILWEQ I/LWEQ domain. Thought to possess an F-actin 100.0
PF01608152 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ 100.0
KOG0980|consensus980 100.0
smart00307200 ILWEQ I/LWEQ domain. Thought to possess an F-actin 100.0
PF01608152 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ 99.94
KOG4261|consensus1003 99.2
KOG4261|consensus1003 97.6
PF09141161 Talin_middle: Talin, middle domain; InterPro: IPR0 96.31
PF08913125 VBS: Vinculin Binding Site; InterPro: IPR015009 Vi 92.91
PF08913125 VBS: Vinculin Binding Site; InterPro: IPR015009 Vi 92.4
PF12205123 GIT1_C: G protein-coupled receptor kinase-interact 90.64
PF09141161 Talin_middle: Talin, middle domain; InterPro: IPR0 89.44
PF01044 968 Vinculin: Vinculin family; InterPro: IPR006077 Vin 88.56
PF01044 968 Vinculin: Vinculin family; InterPro: IPR006077 Vin 86.98
PF12205123 GIT1_C: G protein-coupled receptor kinase-interact 85.32
>KOG0980|consensus Back     alignment and domain information 
Probab=100.00  E-value=8.7e-59  Score=493.14  Aligned_cols=250  Identities=40%  Similarity=0.551  Sum_probs=231.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCC-C------chhHhHHHH-HhHHHHHHHHHHHHHh-ccc----cccchHHHHHHHHHHHH
Q psy9625          93 KAVAMSAKYLLTAADQVVSGG-E------GAKLERLIV-ASHGVAASTAQLVVAS-RVK----AERNSVHLAALSQASRD  159 (394)
Q Consensus        93 kaVa~a~~~Lve~Ad~lv~g~-d------~~~~E~li~-AAk~VaAATaqLvaas-rvK----a~~~s~~~~~L~~Aa~a  159 (394)
                      ..+...++.+.+.-+.+.+.. |      +..+|.+|. +..+|.-++.+|.... +++    .....|++.+|. +..+
T Consensus       717 ~~l~~~lq~~~~~~eel~~~~~di~~e~l~~lld~ema~t~aAI~~A~~rie~~~~Kar~ss~~~~LeVne~iL~-~ct~  795 (980)
T KOG0980|consen  717 MLLRQYLQTLNQLGEELLPKELDIDQELLGNLLDIEMAETDAAIEDAVSRIEAIAAKARESSSGVRLEVNESILS-ACTA  795 (980)
T ss_pred             HHHHHHHHHHHHHhHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCceeeccHHHHH-HHHH
Confidence            366777788888888886665 2      568889999 7899999999998876 333    235669999999 9999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCccchhccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHH
Q psy9625         160 VTNATGSVVATAKTCIHLAEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLI  239 (394)
Q Consensus       160 Vt~A~~~LV~aA~~aq~~~EiV~qg~gs~~~t~~fy~k~~~WteGLISAAk~Va~at~~LveaA~~~v~g~~~~~~E~LI  239 (394)
                      +..|+..||++++.+|  .|||..|+|+.+ ..+||+||+|||||||||||+||.++++|||+||++|+|+  |++|+||
T Consensus       796 lm~aI~~Lv~as~~lQ--~EIVasgrgsas-~~eFY~kNsrWTEGLISAaKAVa~aatvLVeaAdkvV~~~--gkfEeLI  870 (980)
T KOG0980|consen  796 LMEAIMALVKASRELQ--TEIVASGRGSAS-PNEFYKKNSRWTEGLISAAKAVAWAATVLVEAADKVVTGT--GKFEELI  870 (980)
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHhcCCCCC-HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhhhHhcCC--CCcHHHH
Confidence            9999999999999999  899999999988 7999999999999999999999999999999999999999  9999999


Q ss_pred             HHhhhhHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccchhHHHHHHHHHH
Q psy9625         240 VASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLVDESADDLDIASLSLHQARRLEMEA  319 (394)
Q Consensus       240 vaa~eVAAsTAQLv~AsrVKa~~~S~~~~~L~~Ask~V~~At~~LV~avk~~~~~~~~~~~~~d~s~ls~~~~k~~emE~  319 (394)
                      ||++||||||||||+|||||++.+|+.+++|+.|||+|++||+.||++++.+..+.++ ...+|||+||+|+.|++|||+
T Consensus       871 Vas~EIAAsTaQLVaASrVKA~k~S~~ld~L~~ask~Vtqat~~lVa~vks~~sq~e~-~~~~DFS~ls~h~~K~~EME~  949 (980)
T KOG0980|consen  871 VASQEIAASTAQLVAASRVKADKDSKKLDALEVASKAVTQATAQLVASVKSGQSQLEQ-QQSLDFSSLSLHQLKTQEMEQ  949 (980)
T ss_pred             HhhhHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhh-ccccccccccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999887765 689999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy9625         320 QVRVLELEAGLEKERLKLSALRRHHLLKKK  349 (394)
Q Consensus       320 Qv~ILklE~eLe~aR~kL~~iRk~~Y~~~~  349 (394)
                      ||+||+||+.|+++|.||++|||+||++++
T Consensus       950 QVkvLeLEq~L~~eR~rL~elRK~hY~~A~  979 (980)
T KOG0980|consen  950 QVKVLELEQSLQAERARLGELRKQHYHNAD  979 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999999875

>smart00307 ILWEQ I/LWEQ domain Back     alignment and domain information
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin Back     alignment and domain information
>KOG0980|consensus Back     alignment and domain information
>smart00307 ILWEQ I/LWEQ domain Back     alignment and domain information
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin Back     alignment and domain information
>KOG4261|consensus Back     alignment and domain information
>KOG4261|consensus Back     alignment and domain information
>PF09141 Talin_middle: Talin, middle domain; InterPro: IPR015224 This domain adopts a structure consisting of five alpha helices that fold into a bundle Back     alignment and domain information
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions Back     alignment and domain information
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions Back     alignment and domain information
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length Back     alignment and domain information
>PF09141 Talin_middle: Talin, middle domain; InterPro: IPR015224 This domain adopts a structure consisting of five alpha helices that fold into a bundle Back     alignment and domain information
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane Back     alignment and domain information
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane Back     alignment and domain information
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
1r0d_A206 Hip1r Thatch Domain Core Length = 206 5e-32
1r0d_A206 Hip1r Thatch Domain Core Length = 206 3e-21
2jsw_A189 Nmr Structure Of The Talin C-Terminal Actin Binding 2e-09
>pdb|1R0D|A Chain A, Hip1r Thatch Domain Core Length = 206 Back     alignment and structure 
Iteration: 1

 Score =  135 bits (339), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/173 (49%), Positives = 110/173 (63%), Gaps = 25/173 (14%)
Query: 3   TQSRRADTGVKLEVNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQAE 62
            Q+R A +GVKLEVNE+IL+SCT L KAIR+LV          S SL          Q E
Sbjct: 41  NQARHASSGVKLEVNERILNSCTDLXKAIRLLV--------TTSTSL----------QKE 82
Query: 63  IIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVV--SGGEGAKLER 120
           I+ +  G+A+  +EFY +N +WTEGLISA+KAV   A  L+ AAD+VV  +G    K E 
Sbjct: 83  IVESGRGAATQ-QEFYAKNSRWTEGLISASKAVGWGATQLVEAADKVVLHTG----KYEE 137
Query: 121 LIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKT 173
           LIV SH +AASTAQLV AS+VKA ++S HL+ L + SR V     +VVA+ K+
Sbjct: 138 LIVCSHEIAASTAQLVAASKVKANKHSPHLSRLQECSRTVNERAANVVASTKS 190
>pdb|1R0D|A Chain A, Hip1r Thatch Domain Core Length = 206 Back     alignment and structure
>pdb|2JSW|A Chain A, Nmr Structure Of The Talin C-Terminal Actin Binding Site Length = 189 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
1r0d_A206 HIP1-related, huntingtin interacting protein 12, H 5e-38
1r0d_A206 HIP1-related, huntingtin interacting protein 12, H 3e-32
2jsw_A189 Talin-1; C-terminal actin binding site, ABS3, that 1e-36
2jsw_A189 Talin-1; C-terminal actin binding site, ABS3, that 3e-29
1sj8_A308 Talin 1; structural protein; 2.60A {Mus musculus} 2e-06
1sj8_A308 Talin 1; structural protein; 2.60A {Mus musculus} 1e-05
>1r0d_A HIP1-related, huntingtin interacting protein 12, HIP 12; endocytosis, actin-binding, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} SCOP: a.216.1.1 Length = 206 Back     alignment and structure
 Score =  135 bits (340), Expect = 5e-38
 Identities = 85/179 (47%), Positives = 109/179 (60%), Gaps = 21/179 (11%)

Query: 1   MLTQSRRADTGVKLEVNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQ 60
           M+ Q+R A +GVKLEVNE+IL+SCT LMKAIR+LV  S                     Q
Sbjct: 39  MMNQARHASSGVKLEVNERILNSCTDLMKAIRLLVTTS------------------TSLQ 80

Query: 61  AEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLER 120
            EI+ +  G+A+   EFY +N +WTEGLISA+KAV   A  L+ AAD+VV      K E 
Sbjct: 81  KEIVESGRGAATQQ-EFYAKNSRWTEGLISASKAVGWGATQLVEAADKVVLHT--GKYEE 137

Query: 121 LIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAE 179
           LIV SH +AASTAQLV AS+VKA ++S HL+ L + SR V     +VVA+ K+     E
Sbjct: 138 LIVCSHEIAASTAQLVAASKVKANKHSPHLSRLQECSRTVNERAANVVASTKSGQEQIE 196
>1r0d_A HIP1-related, huntingtin interacting protein 12, HIP 12; endocytosis, actin-binding, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} SCOP: a.216.1.1 Length = 206 Back     alignment and structure
>2jsw_A Talin-1; C-terminal actin binding site, ABS3, thatch domain, cytoskeleton, phosphorylation, structural protein, actin- binding protein; NMR {Mus musculus} Length = 189 Back     alignment and structure
>2jsw_A Talin-1; C-terminal actin binding site, ABS3, thatch domain, cytoskeleton, phosphorylation, structural protein, actin- binding protein; NMR {Mus musculus} Length = 189 Back     alignment and structure
>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} SCOP: a.215.1.1 a.216.1.1 Length = 308 Back     alignment and structure
>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} SCOP: a.215.1.1 a.216.1.1 Length = 308 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query394
1r0d_A206 HIP1-related, huntingtin interacting protein 12, H 100.0
2jsw_A189 Talin-1; C-terminal actin binding site, ABS3, that 100.0
1r0d_A206 HIP1-related, huntingtin interacting protein 12, H 100.0
2jsw_A189 Talin-1; C-terminal actin binding site, ABS3, that 100.0
1sj8_A308 Talin 1; structural protein; 2.60A {Mus musculus} 99.88
1sj8_A308 Talin 1; structural protein; 2.60A {Mus musculus} 99.86
2qdq_A50 Talin-1; dimerisation domain, C-terminal actin bin 99.24
3dyj_A332 Talin-1; helix bundles, cytoskeletal protein, inte 98.81
2x0c_A309 Talin-1; cytoskeleton, cell membrane, actin, synem 98.71
2x0c_A309 Talin-1; cytoskeleton, cell membrane, actin, synem 98.53
1u89_A139 Talin 1, talin; 4-helix bundle, LEFT-handed, struc 98.44
1h6g_A256 Alpha-1 catenin; adhesion modulation, cytoskeleton 98.29
3dyj_A332 Talin-1; helix bundles, cytoskeletal protein, inte 98.18
1tr2_A1066 Vinculin isoform 1; actin-binding, cell adhesion; 98.14
1tr2_A 1066 Vinculin isoform 1; actin-binding, cell adhesion; 97.96
3fyq_A199 CG6831-PA (talin); 5-helix bundle, cell adhesion; 97.42
2l7n_A168 Talin-1; integrin, bundle, focal adhesion, structu 97.08
2l10_A158 Talin-1; helical bundle, cytoskeleton, focal adhes 97.07
1u89_A139 Talin 1, talin; 4-helix bundle, LEFT-handed, struc 97.04
2l7a_A131 Talin-1; vinculin, bundle, focal adhesion, integri 96.98
1zw2_B26 Talin, metavinculin; complex, protein binding; 2.1 96.63
3vf0_A283 Vinculin, metavinculin; cytoskeletal F-actin bindi 96.47
1h6g_A256 Alpha-1 catenin; adhesion modulation, cytoskeleton 96.43
4f7g_B216 Talin-1; alpha-helix bundle, integrin activation, 96.42
2l7a_A131 Talin-1; vinculin, bundle, focal adhesion, integri 96.21
3fyq_A199 CG6831-PA (talin); 5-helix bundle, cell adhesion; 95.9
1qkr_A188 Vinculin, tail domain; actin cytoskeleton, cell ad 95.67
1sj7_A174 Talin 1; structural protein; 2.50A {Mus musculus} 95.16
1u6h_B31 Talin; protein-protein complex, cell adhesion; 2.3 94.83
2l10_A158 Talin-1; helical bundle, cytoskeleton, focal adhes 93.41
3rf3_A258 Vinculin, metavinculin; alpha-helix bundle domain, 93.35
3vf0_A283 Vinculin, metavinculin; cytoskeletal F-actin bindi 93.31
4f7g_B216 Talin-1; alpha-helix bundle, integrin activation, 93.29
1qkr_A188 Vinculin, tail domain; actin cytoskeleton, cell ad 92.23
2l7n_A168 Talin-1; integrin, bundle, focal adhesion, structu 90.4
3rf3_A258 Vinculin, metavinculin; alpha-helix bundle domain, 88.98
1u6h_B31 Talin; protein-protein complex, cell adhesion; 2.3 88.73
1zw2_B26 Talin, metavinculin; complex, protein binding; 2.1 86.53
1sj7_A174 Talin 1; structural protein; 2.50A {Mus musculus} 80.48
>1r0d_A HIP1-related, huntingtin interacting protein 12, HIP 12; endocytosis, actin-binding, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} SCOP: a.216.1.1 Back     alignment and structure
Probab=100.00  E-value=4.2e-49  Score=366.67  Aligned_cols=186  Identities=37%  Similarity=0.534  Sum_probs=168.8

Q ss_pred             chhHhHHHH-HhHHHHHHHHHHHHHh-ccc----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Q psy9625         115 GAKLERLIV-ASHGVAASTAQLVVAS-RVK----AERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSA  188 (394)
Q Consensus       115 ~~~~E~li~-AAk~VaAATaqLvaas-rvK----a~~~s~~~~~L~~Aa~aVt~A~~~LV~aA~~aq~~~EiV~qg~gs~  188 (394)
                      ++.+|++|. ++++|++++.+|..+. +.+    ...+.+++.||+ |+++|++|+..||++++.+|  +|||.+|+|..
T Consensus        15 ~~~~e~El~~aa~aIe~Aa~kL~~l~~~~~~~~~~~~l~v~e~IL~-aa~~i~~Ai~~LV~aA~~aQ--~EiV~~Gr~~~   91 (206)
T 1r0d_A           15 GAVVDKEMAATSAAIEDAVRRIEDMMNQARHASSGVKLEVNERILN-SCTDLMKAIRLLVTTSTSLQ--KEIVESGRGAA   91 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcCccchHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHhcCCCC
Confidence            788999888 8899999999999986 333    235679999999 99999999999999999999  99999999987


Q ss_pred             CCccchhccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHhhhhHHHHHHHHHHHhhccCCCchhHH
Q psy9625         189 SNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLA  268 (394)
Q Consensus       189 ~~t~~fy~k~~~WteGLISAAk~Va~at~~LveaA~~~v~g~~~~~~E~LIvaa~eVAAsTAQLv~AsrVKa~~~S~~~~  268 (394)
                      + ..+||++|+|||||||||||+|+.+|+.|||+||++|+|+  +++|+|||++++|++||||||+|||||++++|++++
T Consensus        92 s-~~~fy~kn~~WtEGLISAAkaVa~at~~LveaAd~vv~g~--~~~E~LIvaa~eVAAsTAQLvaAsrVKa~~~S~~~~  168 (206)
T 1r0d_A           92 T-QQEFYAKNSRWTEGLISASKAVGWGATQLVEAADKVVLHT--GKYEELIVCSHEIAASTAQLVAASKVKANKHSPHLS  168 (206)
T ss_dssp             C-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHHHHHTTCCSCTTTHH
T ss_pred             C-CccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHH
Confidence            6 6899999999999999999999999999999999999999  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccc
Q psy9625         269 ALSQASRDVTNATGSVVATAKTCIHLVDESADDLDIASL  307 (394)
Q Consensus       269 ~L~~Ask~V~~At~~LV~avk~~~~~~~~~~~~~d~s~l  307 (394)
                      +|+.||+.|++||++||++||.+....++ .+.+||++|
T Consensus       169 ~L~~Ask~V~~A~~~lV~avk~~~~~~e~-~~~~D~s~l  206 (206)
T 1r0d_A          169 RLQECSRTVNERAANVVASTKSGQEQIED-RDTMDFSGL  206 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccccCcccC
Confidence            99999999999999999999999766554 468999975
>2jsw_A Talin-1; C-terminal actin binding site, ABS3, thatch domain, cytoskeleton, phosphorylation, structural protein, actin- binding protein; NMR {Mus musculus} Back     alignment and structure
>1r0d_A HIP1-related, huntingtin interacting protein 12, HIP 12; endocytosis, actin-binding, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} SCOP: a.216.1.1 Back     alignment and structure
>2jsw_A Talin-1; C-terminal actin binding site, ABS3, thatch domain, cytoskeleton, phosphorylation, structural protein, actin- binding protein; NMR {Mus musculus} Back     alignment and structure
>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} SCOP: a.215.1.1 a.216.1.1 Back     alignment and structure
>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} SCOP: a.215.1.1 a.216.1.1 Back     alignment and structure
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus} Back     alignment and structure
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B Back     alignment and structure
>2x0c_A Talin-1; cytoskeleton, cell membrane, actin, synemin, integrin, vincu cell adhesion, cell projection; 2.00A {Mus musculus} PDB: 1zw3_B Back     alignment and structure
>2x0c_A Talin-1; cytoskeleton, cell membrane, actin, synemin, integrin, vincu cell adhesion, cell projection; 2.00A {Mus musculus} PDB: 1zw3_B Back     alignment and structure
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1 Back     alignment and structure
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A Back     alignment and structure
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B Back     alignment and structure
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A Back     alignment and structure
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A Back     alignment and structure
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster} Back     alignment and structure
>2l7n_A Talin-1; integrin, bundle, focal adhesion, structural protein; NMR {Mus musculus} Back     alignment and structure
>2l10_A Talin-1; helical bundle, cytoskeleton, focal adhesion, structu protein; NMR {Mus musculus} Back     alignment and structure
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1 Back     alignment and structure
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus} Back     alignment and structure
>1zw2_B Talin, metavinculin; complex, protein binding; 2.10A {Gallus gallus} Back     alignment and structure
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL adhesion-protein binding complex; HET: EPE; 2.54A {Homo sapiens} Back     alignment and structure
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A Back     alignment and structure
>4f7g_B Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} PDB: 2kbb_A 2kgx_A Back     alignment and structure
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus} Back     alignment and structure
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster} Back     alignment and structure
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A Back     alignment and structure
>1sj7_A Talin 1; structural protein; 2.50A {Mus musculus} SCOP: a.215.1.1 Back     alignment and structure
>1u6h_B Talin; protein-protein complex, cell adhesion; 2.38A {Gallus gallus} Back     alignment and structure
>2l10_A Talin-1; helical bundle, cytoskeleton, focal adhesion, structu protein; NMR {Mus musculus} Back     alignment and structure
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ... Back     alignment and structure
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL adhesion-protein binding complex; HET: EPE; 2.54A {Homo sapiens} Back     alignment and structure
>4f7g_B Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} PDB: 2kbb_A 2kgx_A Back     alignment and structure
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A Back     alignment and structure
>2l7n_A Talin-1; integrin, bundle, focal adhesion, structural protein; NMR {Mus musculus} Back     alignment and structure
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ... Back     alignment and structure
>1u6h_B Talin; protein-protein complex, cell adhesion; 2.38A {Gallus gallus} Back     alignment and structure
>1zw2_B Talin, metavinculin; complex, protein binding; 2.10A {Gallus gallus} Back     alignment and structure
>1sj7_A Talin 1; structural protein; 2.50A {Mus musculus} SCOP: a.215.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 394
d1r0da_194 a.216.1.1 (A:) Huntingtin interacting protein 12 { 5e-34
d1r0da_194 a.216.1.1 (A:) Huntingtin interacting protein 12 { 2e-28
d1sj8a2125 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus 3e-15
d1sj8a2125 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus 3e-13
d1sj8a2125 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus 2e-04
d1sj8a2125 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus 0.004
d1u89a1138 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus 1e-10
d1u89a1138 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus 6e-10
d1qkra_181 a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [T 3e-08
d1qkra_181 a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [T 3e-08
>d1r0da_ a.216.1.1 (A:) Huntingtin interacting protein 12 {Human (Homo sapiens) [TaxId: 9606]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: I/LWEQ domain
superfamily: I/LWEQ domain
family: I/LWEQ domain
domain: Huntingtin interacting protein 12
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 5e-34
 Identities = 85/179 (47%), Positives = 109/179 (60%), Gaps = 21/179 (11%)

Query: 1   MLTQSRRADTGVKLEVNEKILDSCTTLMKAIRILVQKSPDDLDIASLSLHQARRLEMEAQ 60
           M+ Q+R A +GVKLEVNE+IL+SCT LMKAIR+LV  S                     Q
Sbjct: 32  MMNQARHASSGVKLEVNERILNSCTDLMKAIRLLVTTS------------------TSLQ 73

Query: 61  AEIIMAHHGSASNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLER 120
            EI+ +  G+A+   EFY +N +WTEGLISA+KAV   A  L+ AAD+VV      K E 
Sbjct: 74  KEIVESGRGAATQQ-EFYAKNSRWTEGLISASKAVGWGATQLVEAADKVVLHT--GKYEE 130

Query: 121 LIVASHGVAASTAQLVVASRVKAERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAE 179
           LIV SH +AASTAQLV AS+VKA ++S HL+ L + SR V     +VVA+ K+     E
Sbjct: 131 LIVCSHEIAASTAQLVAASKVKANKHSPHLSRLQECSRTVNERAANVVASTKSGQEQIE 189
>d1r0da_ a.216.1.1 (A:) Huntingtin interacting protein 12 {Human (Homo sapiens) [TaxId: 9606]} Length = 194 Back     information, alignment and structure
>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 125 Back     information, alignment and structure
>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 125 Back     information, alignment and structure
>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 125 Back     information, alignment and structure
>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 125 Back     information, alignment and structure
>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 138 Back     information, alignment and structure
>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 138 Back     information, alignment and structure
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 181 Back     information, alignment and structure
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 181 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query394
d1r0da_194 Huntingtin interacting protein 12 {Human (Homo sap 100.0
d1r0da_194 Huntingtin interacting protein 12 {Human (Homo sap 99.95
d1sj8a2125 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 99.56
d1sj8a2125 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 99.47
d1u89a1138 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 99.4
d1qkra_181 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 99.29
d1u89a1138 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 99.08
d1qkra_181 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 99.01
d2b0ha1136 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 98.58
d2b0ha1136 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 98.33
d1sj7a1167 A middle domain of Talin 1 {Mouse (Mus musculus) [ 97.14
d1st6a7137 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 95.33
d1st6a7137 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 91.39
d1sj7a1167 A middle domain of Talin 1 {Mouse (Mus musculus) [ 87.18
d1t01a1125 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 82.71
>d1r0da_ a.216.1.1 (A:) Huntingtin interacting protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: I/LWEQ domain
superfamily: I/LWEQ domain
family: I/LWEQ domain
domain: Huntingtin interacting protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-34  Score=263.36  Aligned_cols=176  Identities=38%  Similarity=0.525  Sum_probs=163.2

Q ss_pred             chhHhHHHH-HhHHHHHHHHHHHHHh-ccc----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Q psy9625         115 GAKLERLIV-ASHGVAASTAQLVVAS-RVK----AERNSVHLAALSQASRDVTNATGSVVATAKTCIHLAEIIMAHHGSA  188 (394)
Q Consensus       115 ~~~~E~li~-AAk~VaAATaqLvaas-rvK----a~~~s~~~~~L~~Aa~aVt~A~~~LV~aA~~aq~~~EiV~qg~gs~  188 (394)
                      ++.+|++|. +++.|+.++.+|+.+. ++|    ..++.+++.+|+ |++.+.+|+..||++++.+|  .||+..|+|..
T Consensus         8 ~d~~e~el~~~a~aI~~a~~~l~~~~~~~~~~~~~~~~ev~~~iL~-aAk~La~A~~~Lv~aA~~~Q--~el~~~~~~~~   84 (194)
T d1r0da_           8 GAVVDKEMAATSAAIEDAVRRIEDMMNQARHASSGVKLEVNERILN-SCTDLMKAIRLLVTTSTSLQ--KEIVESGRGAA   84 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHCTTS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhc
Confidence            789999999 8899999999999998 334    224567777777 99999999999999999999  89999999887


Q ss_pred             CCccchhccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHhhhhHHHHHHHHHHHhhccCCCchhHH
Q psy9625         189 SNTREFYKRNHQWTEGLISAAKAVAMSAKYLLTAADQVVSGGEGAKLERLIVASHGVAASTAQLVVASRVKAERNSVHLA  268 (394)
Q Consensus       189 ~~t~~fy~k~~~WteGLISAAk~Va~at~~LveaA~~~v~g~~~~~~E~LIvaa~eVAAsTAQLv~AsrVKa~~~S~~~~  268 (394)
                      + ...||++|++|+||||||||.|+.+|+.||++|++++.|+  +++|+||+++++|+.+|+|||++||||++.+|+++.
T Consensus        85 ~-~~~~~~~~~~~~egLisAAK~va~at~~Lv~aA~~v~~~~--~~~eqLi~~ak~vA~staqLv~a~kv~a~~~s~~~~  161 (194)
T d1r0da_          85 T-QQEFYAKNSRWTEGLISASKAVGWGATQLVEAADKVVLHT--GKYEELIVCSHEIAASTAQLVAASKVKANKHSPHLS  161 (194)
T ss_dssp             C-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHHHHHTTCCSCTTTHH
T ss_pred             c-chHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            6 6789999999999999999999999999999999999999  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9625         269 ALSQASRDVTNATGSVVATAKTCIHLVD  296 (394)
Q Consensus       269 ~L~~Ask~V~~At~~LV~avk~~~~~~~  296 (394)
                      +|..|++.|+++|.+||+++|.+....+
T Consensus       162 ~L~~Aa~~V~~~~~~lV~~~k~~~~~~~  189 (194)
T d1r0da_         162 RLQECSRTVNERAANVVASTKSGQEQIE  189 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            9999999999999999999999976544
>d1r0da_ a.216.1.1 (A:) Huntingtin interacting protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sj7a1 a.215.1.1 (A:488-654) A middle domain of Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1sj7a1 a.215.1.1 (A:488-654) A middle domain of Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t01a1 a.24.9.1 (A:1-125) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure