Psyllid ID: psy977

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-----
MPRPCRETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKRFKLPKVDQSLLEATYPVLKAENYTSIKETKSEPLKPTTLSNANKSFSIDSIISSQPSAALPQSMPQPIFSHFHPPVCLPPPIINPSYAAIYAAALHGLLRPPLQMLPGAFPPLNLTPPAGSPLLEVVETSCSSTDSVMQTSVKMDRYSGQPYLPAQQSEHSVSAALDMFENGSFLRRRKRFKLPKVDQSLLEATYPVLKAENYTSIKETKSEPLKPTTLSNANKSFSIDSIISSQPSAALPQSMPQPIFSHFHPPVCLPPPIINPSYAAIYAAALHGLLRPPLQMLPGAFPPLNLTPPAGSPLLEVVETSCSSTDSVMQTSVKKDSFGMKAFLSDFEKILDMRNFQHTHQHIQAGQLRRITGSIQRSNDCLNKTGEL
ccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccHHHHHHccccccccEEcccccccccccccccccccccHHHHccccHHHHHHccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccHHHHcccccccccccccccccccccHHHHHHcHHHHHHcccccccHHHHccccEEEEcccccccHHHHHHcccc
cccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHccHcHHHHHHccccccccEEEEcccccccccccEEEEccccccccccccHHHHHHHcccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccHcccccHHHHccccccccccHHHHHHcccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEccccccccccccccHcHHHHHHHHHccccccccccccccccccccccccccccEEEEEEcccccccccEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHEccccccccccccccccc
mprpcretygdqkppysyISLTAMAiwsspekmlplsdIYRFIadrfpyyrrnTQRWQNSlrhnlsfndcfvkiprrpdrpgkgaywalhpaaldmfengsflrrrkrfklpkvdqsLLEATypvlkaenytsiketkseplkpttlsnanksfsidsiissqpsaalpqsmpqpifshfhppvclpppiinpSYAAIYAAALHgllrpplqmlpgafpplnltppagspllEVVETSCSSTDSVMQTSvkmdrysgqpylpaqqsehSVSAALDMFengsflrrrkrfklpkvdqsLLEATypvlkaenytsiketkseplkpttlsnanksfsidsiissqpsaalpqsmpqpifshfhppvclpppiinpSYAAIYAAALHgllrpplqmlpgafpplnltppagspllEVVETSCSSTDSVMQTSVKKDSFGMKAFLSDFEKILDMRNFQHTHQHIQAGQLRRITGSIQRSNDCLNKTGEL
mprpcretygdqkppySYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWqnslrhnlsfndCFVKIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKRfklpkvdqslleatypvlkaenytsiketkseplkpttlsnaNKSFSIDSIISSQPSAALPQSMPQPIFSHFHPPVCLPPPIINPSYAAIYAAALHGLLRPPLQMLPGAFPPLNLTPPAGSPLLEVVETSCSSTDSVMQTSVKMDRYSGQPYLPAQQSEHSVSAALDMFENGsflrrrkrfklpkvdqslleatypvlkaenytsiketkseplkpttlsnaNKSFSIDSIISSQPSAALPQSMPQPIFSHFHPPVCLPPPIINPSYAAIYAAALHGLLRPPLQMLPGAFPPLNLTPPAGSPLLEVVETSCsstdsvmqtsvkkdsfGMKAFLSDFEKILDMRNFQHTHQHIqagqlrritgsiqrsndclnktgel
MPRPCRETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALHPAALDMFENGSflrrrkrfklPKVDQSLLEATYPVLKAENYTSIKETKSEPLKPTTLSNANKSFSIDSIISSQPSAALPQSMPQPIFSHFHppvclpppiinpSYAAIYAAALHGLLRPPLQMLPGAFPPLNLTPPAGSPLLEVVETSCSSTDSVMQTSVKMDRYSGQPYLPAQQSEHSVSAALDMFENGSflrrrkrfklPKVDQSLLEATYPVLKAENYTSIKETKSEPLKPTTLSNANKSFSIDSIISSQPSAALPQSMPQPIFSHFHppvclpppiinpSYAAIYAAALHGLLRPPLQMLPGAFPPLNLTPPAGSPLLEVVETSCSSTDSVMQTSVKKDSFGMKAFLSDFEKILDMRNFQHTHQHIQAGQLRRITGSIQRSNDCLNKTGEL
***************YSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKRFKLPKVDQSLLEATYPVLKAEN*********************************************IFSHFHPPVCLPPPIINPSYAAIYAAALHGLLRPPLQMLPGAFPPLN***********************************************************FLRRRKRFKLPKVDQSLLEATYPVLKA***********************************************IFSHFHPPVCLPPPIINPSYAAIYAAALHGLLRPPLQMLPGAFPPLNL*******************************FGMKAFLSDFEKILDMRNFQHTHQHIQAGQLRRI*****************
*****************YISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALHPAALDMFENGSFL***************************************KPTTLSNANKSFSIDSIISSQPSAALPQSMPQPIFSHFHPPVCLPPPIIN**************************************************************************************************************************************************************************************************************************************************FGMKAFLSDFEKILDMRNFQHTHQHIQAGQLRRITGSIQRSNDCLN*****
*********GDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKRFKLPKVDQSLLEATYPVLKAENYTSIKETKSEPLKPTTLSNANKSFSIDSIISSQPSAALPQSMPQPIFSHFHPPVCLPPPIINPSYAAIYAAALHGLLRPPLQMLPGAFPPLNLTPPAGSPLLEVVE*********MQTSVKMDRYSGQPYLPAQQSEHSVSAALDMFENGSFLRRRKRFKLPKVDQSLLEATYPVLKAENYTSIKETKSEPLKPTTLSNANKSFSIDSIISSQPSAALPQSMPQPIFSHFHPPVCLPPPIINPSYAAIYAAALHGLLRPPLQMLPGAFPPLNLTPPAGSPLLEVVE**********QTSVKKDSFGMKAFLSDFEKILDMRNFQHTHQHIQAGQLRRITGSIQRSNDCLNKTGEL
******ETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKRFKLP********************************************************************************************GLLRPPL*MLPGAFPPLNLTPPAGSPLLEV********DSVMQTSVKMDRYSGQPYLPAQQSEHSVSAALDMFENGSFLRRRKRFKLPKVDQSLLEATYPVLKAENYTSIKETKS**LKPTTLSNANKSFSIDSIISSQPSAALPQSMPQPIFSHFHPPVCLPPPIINPSYAAIYAAALHGLLRPPLQMLPGAFPPLNLTPPAGSPLLEVVETSCS*********V*KDSFGMKAFLSDFEKILDMRNFQHTHQHIQAGQLRRITGSIQRSN*********
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MPRPCRETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKRFKLPKVDQSLLEATYPVLKAENYTSIKETKSEPLKPTTLSNANKSFSIDSIISSQPSAALPQSMPQPIFSHFHPPVCLPPPIINPSYAAIYAAALHGLLRPPLQMLPGAFPPLNLTPPAGSPLLEVVETSCSSTDSVMQTSVKMDRYSGQPYLPAQQSEHSVSAALDMFENGSFLRRRKRFKLPKVDQSLLEATYPVLKAENYTSIKETKSEPLKPTTLSNANKSFSIDSIISSQPSAALPQSMPQPIFSHFHPPVCLPPPIINPSYAAIYAAALHGLLRPPLQMLPGAFPPLNLTPPAGSPLLEVVETSCSSTDSVMQTSVKKDSFGMKAFLSDFEKILDMRNFQHTHQHIQAGQLRRITGSIQRSNDCLNKTGEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query485 2.2.26 [Sep-21-2011]
P32028372 Fork head domain-containi yes N/A 0.309 0.403 0.718 6e-62
Q99853325 Forkhead box protein B1 O yes N/A 0.239 0.356 0.836 9e-56
Q64732325 Forkhead box protein B1 O yes N/A 0.239 0.356 0.836 1e-55
O93529319 Forkhead box protein B1 O N/A N/A 0.239 0.363 0.818 2e-54
Q5VYV0432 Forkhead box protein B2 O no N/A 0.249 0.280 0.768 2e-53
Q64733428 Forkhead box protein B2 O no N/A 0.249 0.282 0.760 4e-53
P32029271 Fork head domain-containi no N/A 0.243 0.435 0.694 1e-48
Q8JIT6317 Forkhead box protein B2 O N/A N/A 0.212 0.324 0.815 9e-48
Q6P839399 Forkhead box protein A4 O no N/A 0.280 0.340 0.573 1e-42
P34683237 Protein lin-31 OS=Caenorh yes N/A 0.212 0.434 0.737 2e-42
>sp|P32028|FD4_DROME Fork head domain-containing protein FD4 OS=Drosophila melanogaster GN=fd96Ca PE=2 SV=2 Back     alignment and function desciption
 Score =  238 bits (608), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 110/153 (71%), Positives = 123/153 (80%), Gaps = 3/153 (1%)

Query: 1   MPRPCRETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNS 60
           MPRP RE+YG+QKPPYSYISLTAMAIWSSPEKMLPLSDIY+FI DRFPYYR+NTQRWQNS
Sbjct: 1   MPRPSRESYGEQKPPYSYISLTAMAIWSSPEKMLPLSDIYKFITDRFPYYRKNTQRWQNS 60

Query: 61  LRHNLSFNDCFVKIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKRFKLPKVDQSLLE 120
           LRHNLSFNDCF+K+PRRPDRPGKGAYWALHP A DMFENGS LRRRKRFKL K D+ LL 
Sbjct: 61  LRHNLSFNDCFIKVPRRPDRPGKGAYWALHPQAFDMFENGSLLRRRKRFKLHKNDKDLLN 120

Query: 121 ATYPVLKAEN---YTSIKETKSEPLKPTTLSNA 150
                L   N   +T+     +  + P  ++NA
Sbjct: 121 EELTALANLNRFFFTTRNGGSAAHMSPLDMNNA 153
Involved in development during embryogenesis.
Drosophila melanogaster (taxid: 7227)
>sp|Q99853|FOXB1_HUMAN Forkhead box protein B1 OS=Homo sapiens GN=FOXB1 PE=2 SV=3 Back     alignment and function description
>sp|Q64732|FOXB1_MOUSE Forkhead box protein B1 OS=Mus musculus GN=Foxb1 PE=2 SV=2 Back     alignment and function description
>sp|O93529|FOXB1_XENLA Forkhead box protein B1 OS=Xenopus laevis GN=foxb1 PE=2 SV=1 Back     alignment and function description
>sp|Q5VYV0|FOXB2_HUMAN Forkhead box protein B2 OS=Homo sapiens GN=FOXB2 PE=2 SV=1 Back     alignment and function description
>sp|Q64733|FOXB2_MOUSE Forkhead box protein B2 OS=Mus musculus GN=Foxb2 PE=2 SV=1 Back     alignment and function description
>sp|P32029|FD5_DROME Fork head domain-containing protein FD5 OS=Drosophila melanogaster GN=fd96Cb PE=2 SV=2 Back     alignment and function description
>sp|Q8JIT6|FOXB2_XENLA Forkhead box protein B2 OS=Xenopus laevis GN=foxb2 PE=2 SV=1 Back     alignment and function description
>sp|Q6P839|FOXA4_XENTR Forkhead box protein A4 OS=Xenopus tropicalis GN=foxa4 PE=2 SV=1 Back     alignment and function description
>sp|P34683|LIN31_CAEEL Protein lin-31 OS=Caenorhabditis elegans GN=lin-31 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query485
242009393357 Fork head domain-containing protein FD4, 0.414 0.563 0.581 4e-64
195151673379 GL21898 [Drosophila persimilis] gi|19411 0.441 0.564 0.569 8e-64
91082603326 PREDICTED: similar to forkhead protein/ 0.356 0.530 0.700 8e-63
242009395269 Fork head domain-containing protein FD5, 0.424 0.765 0.564 6e-62
195451547389 GK13404 [Drosophila willistoni] gi|19416 0.321 0.401 0.720 2e-61
328717523408 PREDICTED: hypothetical protein LOC10057 0.249 0.296 0.878 3e-61
195388582392 GJ23595 [Drosophila virilis] gi|19415104 0.360 0.446 0.661 5e-61
195038954395 GH18035 [Drosophila grimshawi] gi|193895 0.369 0.453 0.627 9e-61
347967916436 AGAP013297-PA [Anopheles gambiae str. PE 0.298 0.332 0.744 1e-60
312375901506 hypothetical protein AND_13431 [Anophele 0.301 0.288 0.732 3e-60
>gi|242009393|ref|XP_002425472.1| Fork head domain-containing protein FD4, putative [Pediculus humanus corporis] gi|212509308|gb|EEB12734.1| Fork head domain-containing protein FD4, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 135/232 (58%), Positives = 162/232 (69%), Gaps = 31/232 (13%)

Query: 1   MPRPCRETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNS 60
           MPRP RE+YGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFI +RFPYYRRNTQRWQNS
Sbjct: 1   MPRPSRESYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFITERFPYYRRNTQRWQNS 60

Query: 61  LRHNLSFNDCFVKIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKRFKLPKVDQSLLE 120
           LRHNLSFNDCF+KIPRRPDRPGKGAYWALHP ALDMFENGSFLRRRKRFKLPK ++  +E
Sbjct: 61  LRHNLSFNDCFIKIPRRPDRPGKGAYWALHPNALDMFENGSFLRRRKRFKLPKFEKEAIE 120

Query: 121 ATYPVLKAENYTSIKETKSEPLKPTTLS----NANKSFSIDSIISSQPSAALPQSMPQPI 176
           +        N   + +T    +  + +S    N++KSFSIDSII      + P+++  P+
Sbjct: 121 SVI------NGLPLPQTSRSNVPVSAVSNSRINSSKSFSIDSIIHGSEKMSPPKNINAPV 174

Query: 177 FSHFHPPVCLPPPIINPSYAAIYAAALHGLLRPPLQMLPGAFPPLNLTPPAG 228
                    +P P++         A  +G L PP ++   ++ P  L P AG
Sbjct: 175 ---------VPQPLV---------ARGNGSLYPPERV---SYSPTGLPPNAG 205

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195151673|ref|XP_002016763.1| GL21898 [Drosophila persimilis] gi|194111820|gb|EDW33863.1| GL21898 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|91082603|ref|XP_968211.1| PREDICTED: similar to forkhead protein/ forkhead protein domain [Tribolium castaneum] gi|270015000|gb|EFA11448.1| hypothetical protein TcasGA2_TC013630 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242009395|ref|XP_002425473.1| Fork head domain-containing protein FD5, putative [Pediculus humanus corporis] gi|212509309|gb|EEB12735.1| Fork head domain-containing protein FD5, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|195451547|ref|XP_002072971.1| GK13404 [Drosophila willistoni] gi|194169056|gb|EDW83957.1| GK13404 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|328717523|ref|XP_003246231.1| PREDICTED: hypothetical protein LOC100573926 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|195388582|ref|XP_002052958.1| GJ23595 [Drosophila virilis] gi|194151044|gb|EDW66478.1| GJ23595 [Drosophila virilis] Back     alignment and taxonomy information
>gi|195038954|ref|XP_001990840.1| GH18035 [Drosophila grimshawi] gi|193895036|gb|EDV93902.1| GH18035 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|347967916|ref|XP_003436136.1| AGAP013297-PA [Anopheles gambiae str. PEST] gi|333468245|gb|EGK96877.1| AGAP013297-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|312375901|gb|EFR23152.1| hypothetical protein AND_13431 [Anopheles darlingi] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query485
FB|FBgn0004897372 fd96Ca "forkhead domain 96Ca" 0.348 0.454 0.605 1.7e-52
UNIPROTKB|O93529319 foxb1 "Forkhead box protein B1 0.208 0.316 0.831 4e-50
UNIPROTKB|E1B7H0325 FOXB1 "Uncharacterized protein 0.208 0.310 0.851 9.8e-50
UNIPROTKB|Q99853325 FOXB1 "Forkhead box protein B1 0.208 0.310 0.851 9.8e-50
MGI|MGI:1927549325 Foxb1 "forkhead box B1" [Mus m 0.208 0.310 0.851 9.8e-50
UNIPROTKB|E2R277325 FOXB1 "Uncharacterized protein 0.208 0.310 0.851 9.8e-50
UNIPROTKB|D2HLR1325 FOXB1 "Uncharacterized protein 0.208 0.310 0.851 9.8e-50
UNIPROTKB|D4ADN4363 D4ADN4 "Uncharacterized protei 0.208 0.278 0.801 5.6e-49
MGI|MGI:1347468428 Foxb2 "forkhead box B2" [Mus m 0.208 0.235 0.801 1.1e-48
UNIPROTKB|Q4SM19313 FOXB1 "Uncharacterized protein 0.208 0.322 0.841 7.7e-48
FB|FBgn0004897 fd96Ca "forkhead domain 96Ca" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 106/175 (60%), Positives = 125/175 (71%)

Query:     1 MPRPCRETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNS 60
             MPRP RE+YG+QKPPYSYISLTAMAIWSSPEKMLPLSDIY+FI DRFPYYR+NTQRWQNS
Sbjct:     1 MPRPSRESYGEQKPPYSYISLTAMAIWSSPEKMLPLSDIYKFITDRFPYYRKNTQRWQNS 60

Query:    61 LRHNLSFNDCFVKIPRRPDRPGKGAYWALHPAALDMFENGSXXXXXXXXXXPKVDQSLLE 120
             LRHNLSFNDCF+K+PRRPDRPGKGAYWALHP A DMFENGS           K D+ LL 
Sbjct:    61 LRHNLSFNDCFIKVPRRPDRPGKGAYWALHPQAFDMFENGSLLRRRKRFKLHKNDKDLLN 120

Query:   121 ATYPVLKAEN---YTSIKETKSEPLKPTTLSNANKSFSIDSIISSQPSAALPQSM 172
                  L   N   +T+     +  + P  ++NA  +  +D +  S  +A +P S+
Sbjct:   121 EELTALANLNRFFFTTRNGGSAAHMSPLDMNNA-AAMRLDPLPRS--TAHMPNSL 172
GO:0005634 "nucleus" evidence=ISS;NAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0009790 "embryo development" evidence=IBA;NAS
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0008134 "transcription factor binding" evidence=IBA
GO:0048806 "genitalia development" evidence=IBA
GO:0008301 "DNA binding, bending" evidence=IBA
GO:0009888 "tissue development" evidence=IBA
GO:0048813 "dendrite morphogenesis" evidence=IBA
GO:0005667 "transcription factor complex" evidence=IBA
GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IBA
GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA
GO:0003690 "double-stranded DNA binding" evidence=IBA
GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IBA
GO:0007389 "pattern specification process" evidence=IBA
UNIPROTKB|O93529 foxb1 "Forkhead box protein B1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|E1B7H0 FOXB1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q99853 FOXB1 "Forkhead box protein B1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1927549 Foxb1 "forkhead box B1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R277 FOXB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|D2HLR1 FOXB1 "Uncharacterized protein" [Ailuropoda melanoleuca (taxid:9646)] Back     alignment and assigned GO terms
UNIPROTKB|D4ADN4 D4ADN4 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1347468 Foxb2 "forkhead box B2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q4SM19 FOXB1 "Uncharacterized protein" [Tetraodon nigroviridis (taxid:99883)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P34683LIN31_CAEELNo assigned EC number0.73780.21230.4345yesN/A
P32028FD4_DROMENo assigned EC number0.71890.30920.4032yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query485
pfam0025096 pfam00250, Fork_head, Fork head domain 8e-59
smart0033989 smart00339, FH, FORKHEAD 2e-50
cd0005978 cd00059, FH, Forkhead (FH), also known as a "winge 3e-47
COG5025610 COG5025, COG5025, Transcription factor of the Fork 2e-17
COG5025610 COG5025, COG5025, Transcription factor of the Fork 2e-12
>gnl|CDD|189470 pfam00250, Fork_head, Fork head domain Back     alignment and domain information 
 Score =  188 bits (479), Expect = 8e-59
 Identities = 65/96 (67%), Positives = 79/96 (82%)

Query: 13  KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
           KPPYSYI+L  MAI  SPEKML LS+IY++I D FPYYR+N Q WQNS+RHNLS N CF+
Sbjct: 1   KPPYSYIALITMAIQQSPEKMLTLSEIYQWIMDLFPYYRQNKQGWQNSIRHNLSLNKCFI 60

Query: 73  KIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKR 108
           K+PR PD+PGKG+YW L P + +MFENG +L+RRKR
Sbjct: 61  KVPRSPDKPGKGSYWTLDPESENMFENGKYLKRRKR 96

Length = 96
>gnl|CDD|214627 smart00339, FH, FORKHEAD Back     alignment and domain information
>gnl|CDD|238016 cd00059, FH, Forkhead (FH), also known as a "winged helix" Back     alignment and domain information
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 485
KOG3562|consensus277 100.0
KOG3563|consensus454 100.0
PF0025096 Fork_head: Fork head domain; InterPro: IPR001766 T 100.0
cd0005978 FH Forkhead (FH), also known as a "winged helix". 100.0
smart0033989 FH FORKHEAD. FORKHEAD, also known as a "winged hel 100.0
KOG2294|consensus454 100.0
KOG4385|consensus581 99.83
COG5025610 Transcription factor of the Forkhead/HNF3 family [ 99.8
COG5025610 Transcription factor of the Forkhead/HNF3 family [ 99.49
KOG3562|consensus277 99.42
KOG3563|consensus454 97.86
KOG2294|consensus454 97.02
PF0053877 Linker_histone: linker histone H1 and H5 family; I 91.77
smart0052666 H15 Domain in histone families 1 and 5. 90.84
cd0007388 H15 linker histone 1 and histone 5 domains; the ba 86.7
PF0025096 Fork_head: Fork head domain; InterPro: IPR001766 T 85.67
PF0506672 HARE-HTH: HB1, ASXL, restriction endonuclease HTH 82.64
>KOG3562|consensus Back     alignment and domain information 
Probab=100.00  E-value=9.1e-46  Score=355.05  Aligned_cols=154  Identities=66%  Similarity=1.161  Sum_probs=135.8

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccceecccCCCCC
Q psy977            1 MPRPCRETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDR   80 (485)
Q Consensus         1 mprp~r~~~~d~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLSLNkcFvKVpR~~de   80 (485)
                      ||||+|++|+||||||||+.|.+|||++||+|+|.|+|||+||+++|||||.+++.||||+|||||+|+||+||+|..|+
T Consensus         1 MPRP~k~sY~dQKPPYSYIsLTaMAI~~SpekmLPLseIYkfImDrFPfYRkNTQrWQNSLRHNLSFNDCFIKiPRr~dr   80 (277)
T KOG3562|consen    1 MPRPGKNSYGDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPFYRKNTQRWQNSLRHNLSFNDCFIKIPRRPDR   80 (277)
T ss_pred             CCCCccccccccCCCceeeehhhHHhhcChhhcCcHHHHHHHHHhhCchhhhchHHHHHHhhccccccceeeecCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceeecCCchhhhccCCceeecccCCCCCc-chhhhhhhhcccccccccCCCccCCCCCCCCCCCCCCCCCcccccc
Q psy977           81 PGKGAYWALHPAALDMFENGSFLRRRKRFKLPK-VDQSLLEATYPVLKAENYTSIKETKSEPLKPTTLSNANKSFSIDSI  159 (485)
Q Consensus        81 pGKGsyWtIdPea~~~fe~Gs~~RRRKR~k~~k-~~~~~l~~~~~~l~~~~~~~~~~~~~~~~pp~~~s~~~~sFsIDSI  159 (485)
                      +|||+||+|+|.+.++||+|+++|||||+|..+ ..++..+..++.++..++            ....++.+.++.|+++
T Consensus        81 pGKGsyWalHP~a~dMFENGS~LRRrKRFrv~k~~d~d~~n~~l~a~a~~~~------------v~~~~~n~~~~a~~~~  148 (277)
T KOG3562|consen   81 PGKGSYWALHPSAFDMFENGSLLRRRKRFRVLKSDDKDPSNTHLPAMANAAY------------VAQPSGNKHPLAIENP  148 (277)
T ss_pred             CCCccceeeccchhhhcccchHHHHhhhhhhccccccCcccccccccccchh------------eeeccCCCCcccccCc
Confidence            999999999999999999999999999999888 333444444444333222            1123577789999999


Q ss_pred             ccCCCCC
Q psy977          160 ISSQPSA  166 (485)
Q Consensus       160 l~~~~~~  166 (485)
                      |....++
T Consensus       149 i~~~~~~  155 (277)
T KOG3562|consen  149 IDPEYKS  155 (277)
T ss_pred             cChhhhh
Confidence            9988874

>KOG3563|consensus Back     alignment and domain information
>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [] Back     alignment and domain information
>cd00059 FH Forkhead (FH), also known as a "winged helix" Back     alignment and domain information
>smart00339 FH FORKHEAD Back     alignment and domain information
>KOG2294|consensus Back     alignment and domain information
>KOG4385|consensus Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>KOG3562|consensus Back     alignment and domain information
>KOG3563|consensus Back     alignment and domain information
>KOG2294|consensus Back     alignment and domain information
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication) Back     alignment and domain information
>smart00526 H15 Domain in histone families 1 and 5 Back     alignment and domain information
>cd00073 H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Back     alignment and domain information
>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [] Back     alignment and domain information
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query485
1vtn_C102 Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Reco 7e-35
1d5v_A94 Solution Structure Of The Forkhead Domain Of The Ad 1e-31
2hfh_A109 The Nmr Structures Of A Winged Helix Protein: Genes 3e-30
2hdc_A97 Structure Of Transcription Factor GenesisDNA COMPLE 8e-30
2c6y_A111 Crystal Structure Of Interleukin Enhancer-Binding F 4e-20
1jxs_A98 Solution Structure Of The Dna-Binding Domain Of Int 9e-20
2a3s_A101 Solution Structure And Dynamics Of Dna-Binding Doma 2e-19
1kq8_A100 Solution Structure Of Winged Helix Protein Hfh-1 Le 5e-19
3g73_A142 Structure Of The Foxm1 Dna Binding Length = 142 4e-14
2kiu_A87 Solution Structure And Backbone Dynamics Of The Dna 2e-13
2a07_F93 Crystal Structure Of Foxp2 Bound Specifically To Dn 2e-12
3qrf_F82 Structure Of A Domain-Swapped Foxp3 Dimer Length = 2e-11
3l2c_A110 Crystal Structure Of The Dna Binding Domain Of Foxo 4e-10
1e17_A150 Solution Structure Of The Dna Binding Domain Of The 4e-10
3co7_C117 Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Le 7e-09
3co6_C100 Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Le 2e-08
2uzk_A97 Crystal Structure Of The Human Foxo3a-Dbd Bound To 3e-08
2k86_A103 Solution Structure Of Foxo3a Forkhead Domain Length 3e-08
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition Motif Resembles Histone H5 Length = 102 Back     alignment and structure 
Iteration: 1

 Score =  145 bits (365), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 75/88 (85%)
Query: 13  KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
           KPPYSYISL  MAI  +P KML LS+IY++I D FPYYR N QRWQNS+RH+LSFNDCFV
Sbjct: 3   KPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFV 62
Query: 73  KIPRRPDRPGKGAYWALHPAALDMFENG 100
           K+ R PD+PGKG+YWALHP++ +MFENG
Sbjct: 63  KVARSPDKPGKGSYWALHPSSGNMFENG 90
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The Adipocyte- Transcription Factor Freac-11 (S12) Length = 94 Back     alignment and structure
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20 Structures Length = 109 Back     alignment and structure
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX Length = 97 Back     alignment and structure
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1 Bound To Dna Length = 111 Back     alignment and structure
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Interleukin Enhancer Binding Factor Length = 98 Back     alignment and structure
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of Myocyte Nuclear Factor Length = 101 Back     alignment and structure
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1 Length = 100 Back     alignment and structure
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding Length = 142 Back     alignment and structure
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The Dna-Binding Domain Of Foxp1: Insight Into Its Domain Swapping Length = 87 Back     alignment and structure
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna. Length = 93 Back     alignment and structure
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer Length = 82 Back     alignment and structure
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound To Dna Length = 110 Back     alignment and structure
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Length = 117 Back     alignment and structure
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Length = 100 Back     alignment and structure
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna Length = 97 Back     alignment and structure
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain Length = 103 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query485
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 4e-68
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 4e-05
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 1e-67
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 7e-05
2c6y_A111 Forkhead box protein K2; transcription regulation, 5e-67
2hdc_A97 Protein (transcription factor); structure, dyanami 9e-66
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 2e-62
3g73_A142 Forkhead box protein M1; DNA-binding domain, forkh 8e-52
2a07_F93 Forkhead box protein P2; double-helix, swapping, h 3e-48
3coa_C117 Forkhead box protein O1; winged helix, forkhead do 2e-46
3bpy_A85 FORK head domain, forkhead transcription factor FO 1e-44
1e17_A150 AFX; DNA binding domain, winged helix; NMR {Homo s 1e-43
3l2c_A110 Forkhead box protein O4; winged helix, transcripti 7e-43
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Length = 102 Back     alignment and structure
 Score =  212 bits (541), Expect = 4e-68
 Identities = 71/100 (71%), Positives = 85/100 (85%)

Query: 12  QKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCF 71
            KPPYSYISL  MAI  +P KML LS+IY++I D FPYYR N QRWQNS+RH+LSFNDCF
Sbjct: 2   AKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCF 61

Query: 72  VKIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKRFKL 111
           VK+ R PD+PGKG+YWALHP++ +MFENG +LRR+KRFKL
Sbjct: 62  VKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKRFKL 101
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Length = 102 Back     alignment and structure
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 109 Back     alignment and structure
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 109 Back     alignment and structure
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Length = 111 Back     alignment and structure
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 97 Back     alignment and structure
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 100 Back     alignment and structure
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Length = 142 Back     alignment and structure
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Length = 93 Back     alignment and structure
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Length = 117 Back     alignment and structure
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} SCOP: a.4.5.14 Length = 85 Back     alignment and structure
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} PDB: 3co6_C* Length = 110 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query485
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 100.0
2hdc_A97 Protein (transcription factor); structure, dyanami 100.0
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 100.0
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 100.0
2c6y_A111 Forkhead box protein K2; transcription regulation, 100.0
3coa_C117 Forkhead box protein O1; winged helix, forkhead do 100.0
3l2c_A110 Forkhead box protein O4; winged helix, transcripti 100.0
3bpy_A85 FORK head domain, forkhead transcription factor FO 100.0
1e17_A150 AFX; DNA binding domain, winged helix; NMR {Homo s 100.0
2a07_F93 Forkhead box protein P2; double-helix, swapping, h 100.0
3g73_A142 Forkhead box protein M1; DNA-binding domain, forkh 100.0
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 98.09
2hdc_A97 Protein (transcription factor); structure, dyanami 97.89
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 97.88
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 97.71
2c6y_A111 Forkhead box protein K2; transcription regulation, 96.32
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Back     alignment and structure
Probab=100.00  E-value=1.6e-43  Score=303.59  Aligned_cols=101  Identities=70%  Similarity=1.298  Sum_probs=98.2

Q ss_pred             CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccceecccCCCCCCCCcceeecC
Q psy977           11 DQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALH   90 (485)
Q Consensus        11 d~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLSLNkcFvKVpR~~depGKGsyWtId   90 (485)
                      ++||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|..+++|||+||+|+
T Consensus         1 h~KPp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~   80 (102)
T 1vtn_C            1 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALH   80 (102)
T ss_dssp             CCCCSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEEC
T ss_pred             CcCcCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEEC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhccCCceeecccCCCC
Q psy977           91 PAALDMFENGSFLRRRKRFKL  111 (485)
Q Consensus        91 Pea~~~fe~Gs~~RRRKR~k~  111 (485)
                      |++.++|++|.++|||||+|.
T Consensus        81 p~~~~~f~~g~~~rr~~~~~~  101 (102)
T 1vtn_C           81 PSSGNMFENGCYLRRQKRFKL  101 (102)
T ss_dssp             GGGCSTTCSSCSSSCSSCCCC
T ss_pred             cCHHHHhhcCCeecccccccc
Confidence            999999999999999999874
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Back     alignment and structure
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Back     alignment and structure
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C* Back     alignment and structure
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} Back     alignment and structure
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Back     alignment and structure
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Back     alignment and structure
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Back     alignment and structure
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 485
d2hdca_97 a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [Ta 2e-48
d2c6ya198 a.4.5.14 (A:1-98) Interleukin enhancer binding fac 2e-48
d1d5va_94 a.4.5.14 (A:) Adipocyte-transcription factor FREAC 4e-45
d1kq8a_75 a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Ra 8e-34
d2a07f182 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP 2e-33
d3bpya185 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapie 4e-32
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Genesis
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  159 bits (404), Expect = 2e-48
 Identities = 66/96 (68%), Positives = 73/96 (76%)

Query: 13  KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
           KPPYSYI+L  MAI  SP+K L LS I  FI++RFPYYR     WQNS+RHNLS NDCFV
Sbjct: 2   KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61

Query: 73  KIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKR 108
           KIPR P  PGKG YW L P + DMF+NGSFLRRRKR
Sbjct: 62  KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 75 Back     information, alignment and structure
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query485
d2c6ya198 Interleukin enhancer binding factor {Human (Homo s 100.0
d2hdca_97 Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} 100.0
d1d5va_94 Adipocyte-transcription factor FREAC-11 (s12, fkh- 100.0
d1kq8a_75 HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norv 100.0
d2a07f182 Forkhead box protein P2, FOXP2 {Human (Homo sapien 100.0
d3bpya185 Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} 99.98
d2hdca_97 Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} 95.83
d2c6ya198 Interleukin enhancer binding factor {Human (Homo s 89.67
d1d5va_94 Adipocyte-transcription factor FREAC-11 (s12, fkh- 89.52
d1ussa_88 Histone H1 homologue Hho1p {Baker's yeast (Sacchar 89.45
d1hsta_74 Histone H5, globular domain {Chicken (Gallus gallu 88.05
d1usta_92 Histone H1 homologue Hho1p {Baker's yeast (Sacchar 87.48
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Interleukin enhancer binding factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-41  Score=284.93  Aligned_cols=98  Identities=47%  Similarity=0.937  Sum_probs=94.2

Q ss_pred             CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccceecccCCCCCCCCcceeecC
Q psy977           11 DQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALH   90 (485)
Q Consensus        11 d~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLSLNkcFvKVpR~~depGKGsyWtId   90 (485)
                      |.||||||++||+|||++||+++|||+|||+||+++|||||.++.|||||||||||+|+||+||+|..+++|||+||+|+
T Consensus         1 ~~KP~~sY~~LI~~Ai~~sp~~~ltL~eIy~~i~~~fpyfr~~~~gWkNSIRHnLS~n~~F~kv~r~~~~~gKg~~W~l~   80 (98)
T d2c6ya1           1 DSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRID   80 (98)
T ss_dssp             CCCCSSCHHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEEEEC
T ss_pred             CCCCCccHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcchhhchhcccccceEeccCCCCCCCCCceEEEC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999899999999999


Q ss_pred             CchhhhccCCceeecccC
Q psy977           91 PAALDMFENGSFLRRRKR  108 (485)
Q Consensus        91 Pea~~~fe~Gs~~RRRKR  108 (485)
                      |++.+.|+++.+++||+|
T Consensus        81 p~~~~~~~~~~~~krr~r   98 (98)
T d2c6ya1          81 PASESKLIEQAFRKRRPR   98 (98)
T ss_dssp             HHHHHHHHHHHTCCCCCC
T ss_pred             ccHHhhhhcchhhccCCC
Confidence            999999999988777765
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ussa_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure