Psyllid ID: psy9780

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD
Secondary Structure (PSIPRED)
cHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHccccccccHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccc
Coil and Loop (DISEMBL)
MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEqtnkskgpnftiqrrepgltlsTAQLERNKTKEQIEEEKKIALNIrikplnvegwsIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKkgldpealtgkypvkeeERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEqtnkskgpnftiqrrepgltlsTAQLERNKTKEQIEEEKKIALNIrikplnvegwsIHKLQAKATELWETIVKLETDkydleerqkrqdyd
Flexible Loop (DISEMBL)
maqrkkeeeerrqreveekkqrdleekrQRLEEAEKKRQAMMAALkeqtnkskgpnftiqrrepgltlstaqlernktkeqieeekkialnirikplnvegWSIHKLQAKATELWETIVKLetdkydleerqkrqdydlkELKERQKQQLRhkalkkgldpealtgkypvkeeerrqreveekkqrdleekrQRLEEAEKKRQAMMAALkeqtnkskgpnftiqrrepgltlstaqlernktkeqieeekkialnirikplnvegWSIHKLQAKATELWETIVKLetdkydleerqkrqdyd
Low Complexity Region (SEG)
MAqrkkeeeerrqreveekkqrDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNktkeqieeekkiALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPvkeeerrqreveekkqrDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNktkeqieeekkiALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD
Disordered region (IsUnstruct)
**************************************************************************************KIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKY****************************************************************************************************************************KIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETD**************
Disordered Region (DISOPRED)
****K*************************************************************************************************************WETIVKLETDKY******************************************************************************************************************************************************ELWETIVKLETDKYDLEE*Q******
Disordered Region (DISEMBL)
****************************QRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVK*********************QRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD
Disordered Region (DISPRO)
*********************R**E*KRQRLE**E*******************PNFTIQ***PGLTLSTAQ******KEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRH****KGLDPEALTGKYPVKEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQA*MAALK*****S*GPNFTIQRR*PGLTLSTAQ****KTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQK*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSKGPNFTIQRREPGLTxxxxxxxxxxxxxxxxxxxxxALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSKGPNFTIQRREPGLTxxxxxxxxxxxxxxxxxxxxxALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q9XZ71	384	Troponin T OS=Periplaneta	N/A	N/A	0.562	0.442	0.783	1e-63
P19351	397	Troponin T, skeletal musc	yes	N/A	0.559	0.425	0.767	3e-56
Q27371	405	Troponin T OS=Caenorhabdi	yes	N/A	0.483	0.360	0.401	3e-17
Q8MKI3	271	Troponin T, fast skeletal	no	N/A	0.350	0.391	0.391	8e-10
P09739	259	Troponin T, fast skeletal	yes	N/A	0.307	0.359	0.405	3e-09
Q9QZ47	272	Troponin T, fast skeletal	no	N/A	0.307	0.341	0.405	3e-09
Q75NG9	271	Troponin T, fast skeletal	yes	N/A	0.350	0.391	0.373	3e-08
P02641	279	Troponin T, fast skeletal	yes	N/A	0.413	0.448	0.380	3e-08
P45378	269	Troponin T, fast skeletal	no	N/A	0.307	0.345	0.396	6e-08
P02642	302	Troponin T, cardiac muscl	yes	N/A	0.238	0.238	0.479	3e-07

>sp|Q9XZ71|TNNT_PERAM Troponin T OS=Periplaneta americana GN=TNT PE=2 SV=1

 Score =  243 bits (620), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 134/171 (78%), Positives = 155/171 (90%), Gaps = 1/171 (0%)

Query: 1   MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 60
           MA+RKK+EEERR RE+EEKKQRD+EEKR+RLEEAEKKRQAMM ALKEQ  + KGPNFTIQ
Sbjct: 89  MAERKKQEEERRVREIEEKKQRDIEEKRRRLEEAEKKRQAMMQALKEQ-KQQKGPNFTIQ 147

Query: 61  RREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVK 120
           +++P   +S+AQ+ERNKTKEQ+EEEKKI+L+ RIKPL +E  ++ KL+ KATELW+ IVK
Sbjct: 148 KKDPSFNMSSAQIERNKTKEQLEEEKKISLSFRIKPLEIENLNVDKLKVKATELWDAIVK 207

Query: 121 LETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVK 171
           LET+KYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYP K
Sbjct: 208 LETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPPK 258

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.
Periplaneta americana (taxid: 6978)

>sp|P19351|TNNT_DROME Troponin T, skeletal muscle OS=Drosophila melanogaster GN=up PE=1 SV=3

 Score =  218 bits (556), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 132/172 (76%), Positives = 150/172 (87%), Gaps = 3/172 (1%)

Query: 1   MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 60
           MAQRKKEEEERR RE EEKKQR++EEKR RLEEAEKKRQAM+ A+K++  K  GPNFTI 
Sbjct: 92  MAQRKKEEEERRVREAEEKKQREIEEKRMRLEEAEKKRQAMLQAMKDKDKK--GPNFTIA 149

Query: 61  RREPG-LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIV 119
           +++ G L LS+A +ERNKTKEQ+EEEKKI+L+ RIKPL +EG+   KL+ KA ELWE IV
Sbjct: 150 KKDAGVLGLSSAAMERNKTKEQLEEEKKISLSFRIKPLAIEGFGEAKLREKAQELWELIV 209

Query: 120 KLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVK 171
           KLET+KYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYP K
Sbjct: 210 KLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPPK 261

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Drosophila melanogaster (taxid: 7227)

>sp|Q27371|TNNT_CAEEL Troponin T OS=Caenorhabditis elegans GN=mup-2 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 90/152 (59%), Gaps = 6/152 (3%)

Query: 26  EKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRR--EPGLTLSTAQLERNK---TKE 80
           EK ++ EE  +++Q M  A   +     G NFT+  +  +     + AQ +  K   +KE
Sbjct: 146 EKIRKNEEKVRRQQMMAGAFNGRVEAGAGRNFTVASKGDQAAQFGNLAQAKGGKDVMSKE 205

Query: 81  QIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLK 140
           Q+E+ K+  L    +  +V G   + L+ +   L   IVKLE +KYDLE+R++RQDYD+K
Sbjct: 206 QMEDAKRNFLAAVCRVQDVSGLLPNDLKERIRGLHARIVKLEAEKYDLEKRRERQDYDMK 265

Query: 141 ELKERQKQQLRHKALKKGLDP-EALTGKYPVK 171
           EL ERQ+Q  R+KALKKGLDP EA +  +P K
Sbjct: 266 ELHERQRQAARNKALKKGLDPEEAASSVHPPK 297

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to muscle actomyosin ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8MKI3|TNNT3_BOVIN Troponin T, fast skeletal muscle OS=Bos taurus GN=Tnnt3 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 64/115 (55%), Gaps = 9/115 (7%)

Query: 52  SKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKA 111
           S G N++         L+ A  +R K K+   E KK  L  R KPLN++  S  KL+ KA
Sbjct: 162 SMGANYSS-------YLAKADQKRGK-KQTAREMKKKVLAERRKPLNIDHLSEDKLRDKA 213

Query: 112 TELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTG 166
            ELW+T+ +LETDK++  E+ KRQ YD+  L+ R  Q  +H + K G  P+   G
Sbjct: 214 KELWDTLYQLETDKFEYGEKLKRQKYDITNLRSRIDQAQKH-SKKAGTAPKGKVG 267

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Bos taurus (taxid: 9913)

>sp|P09739|TNNT3_RAT Troponin T, fast skeletal muscle OS=Rattus norvegicus GN=Tnnt3 PE=2 SV=2

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 8/101 (7%)

Query: 52  SKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKA 111
           S G N++         L+ A  +R K +   E +KKI L  R KPLN++  S  KL+ KA
Sbjct: 150 SMGANYSS-------YLAKADQKRGKKQTAREMKKKI-LAERRKPLNIDHLSDDKLRDKA 201

Query: 112 TELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRH 152
            ELW+T+ +LETDK++  E+ KRQ YD+  L+ R  Q  +H
Sbjct: 202 KELWDTLYQLETDKFEFGEKLKRQKYDITTLRSRIDQAQKH 242

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Rattus norvegicus (taxid: 10116)

>sp|Q9QZ47|TNNT3_MOUSE Troponin T, fast skeletal muscle OS=Mus musculus GN=Tnnt3 PE=1 SV=3

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 8/101 (7%)

Query: 52  SKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKA 111
           S G N++         L+ A  +R K +   E +KKI L  R KPLN++  S  KL+ KA
Sbjct: 163 SMGANYSS-------YLAKADQKRGKKQTAREMKKKI-LAERRKPLNIDHLSDDKLRDKA 214

Query: 112 TELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRH 152
            ELW+T+ +LETDK++  E+ KRQ YD+  L+ R  Q  +H
Sbjct: 215 KELWDTLYQLETDKFEFGEKLKRQKYDITTLRSRIDQAQKH 255

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Mus musculus (taxid: 10090)

>sp|Q75NG9|TNNT3_PIG Troponin T, fast skeletal muscle OS=Sus scrofa GN=TNNT3 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 9/115 (7%)

Query: 52  SKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKA 111
           S G N++         L+ A  +R K K+   E KK  L  R KPLN++  S  KL+ KA
Sbjct: 162 SMGANYSS-------YLAKADQKRGK-KQTAREMKKKVLAERRKPLNIDHLSEDKLRDKA 213

Query: 112 TELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTG 166
            ELW+ + +LE DK++  E+ KRQ YD+  L+ R  Q  +H + K G  P+   G
Sbjct: 214 KELWDALYQLEIDKFEYGEKLKRQKYDIINLRSRIDQAQKH-SKKAGTTPKGKVG 267

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Sus scrofa (taxid: 9823)

>sp|P02641|TNNT3_RABIT Troponin T, fast skeletal muscle OS=Oryctolagus cuniculus GN=TNNT3 PE=1 SV=4

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 83/142 (58%), Gaps = 17/142 (11%)

Query: 4   RKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRRE 63
           R ++E ER+ R  EEK +R+ E+ ++R EE  KK++A+          S G N++     
Sbjct: 131 RAEKERERQNRLAEEKARREEEDAKRRAEEDLKKKKAL---------SSMGANYSS---- 177

Query: 64  PGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLET 123
               L+ A  +R K +   E +KKI L  R KPLN++  S  KL+ KA ELW+T+ +LET
Sbjct: 178 ---YLAKADQKRGKKQTAREMKKKI-LAERRKPLNIDHLSDEKLRDKAKELWDTLYQLET 233

Query: 124 DKYDLEERQKRQDYDLKELKER 145
           DK++  E+ KRQ YD+  ++ R
Sbjct: 234 DKFEFGEKLKRQKYDIMNVRAR 255

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Oryctolagus cuniculus (taxid: 9986)

>sp|P45378|TNNT3_HUMAN Troponin T, fast skeletal muscle OS=Homo sapiens GN=TNNT3 PE=1 SV=3

 Score = 58.5 bits (140), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 8/101 (7%)

Query: 52  SKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKA 111
           S G N++         L+ A  +R K +   E +KKI L  R KPLN++     KL+ KA
Sbjct: 160 SMGANYSS-------YLAKADQKRGKKQTAREMKKKI-LAERRKPLNIDHLGEDKLRDKA 211

Query: 112 TELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRH 152
            ELWET+ +LE DK++  E+ KRQ YD+  L+ R  Q  +H
Sbjct: 212 KELWETLHQLEIDKFEFGEKLKRQKYDITTLRSRIDQAQKH 252

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Homo sapiens (taxid: 9606)

>sp|P02642|TNNT2_CHICK Troponin T, cardiac muscle isoforms OS=Gallus gallus GN=TNNT2 PE=2 SV=2

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 50/73 (68%), Gaps = 1/73 (1%)

Query: 74  ERNKTKEQIE-EEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQ 132
           E+   K+Q E E+KK  L+ R KPLN++  S  KL+ KA ELW+TI  LE +K+DL+E+ 
Sbjct: 206 EKKGGKKQTEREKKKKILSERRKPLNIDHLSEDKLRDKAKELWQTIRDLEAEKFDLQEKF 265

Query: 133 KRQDYDLKELKER 145
           KRQ Y++  L+ R
Sbjct: 266 KRQKYEINVLRNR 278

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
328708479	376	PREDICTED: troponin T-like isoform 2 [Ac	0.503	0.404	0.828	3e-66
328708481	385	PREDICTED: troponin T-like isoform 3 [Ac	0.503	0.394	0.828	3e-66
328708484	379	PREDICTED: troponin T-like isoform 4 [Ac	0.503	0.401	0.828	4e-66
193587311	370	PREDICTED: troponin T-like isoform 1 [Ac	0.503	0.410	0.828	5e-66
48428564	384	RecName: Full=Troponin T; Short=TnT gi|4	0.562	0.442	0.783	7e-62
219893746	376	troponin isoform 3, TpnT3 [Lethocerus in	0.562	0.452	0.796	2e-61
219893742	359	troponin isoform 1, TpnT1 [Lethocerus in	0.562	0.473	0.796	2e-61
219893744	300	troponin isoform 2, TpnT2 [Lethocerus in	0.562	0.566	0.796	2e-61
91076896	383	PREDICTED: similar to upheld CG7107-PG i	0.562	0.443	0.801	3e-61
270001997	382	hypothetical protein TcasGA2_TC000933 [T	0.562	0.445	0.801	3e-61

>gi|328708479|ref|XP_003243701.1| PREDICTED: troponin T-like isoform 2 [Acyrthosiphon pisum]

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 126/152 (82%), Positives = 144/152 (94%)

Query: 20  KQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTK 79
           KQ+D+EEKR+RLEEAEKKRQAMMAALKEQTNKSKGPNFTI ++E  L++++AQLERNKT+
Sbjct: 95  KQKDIEEKRKRLEEAEKKRQAMMAALKEQTNKSKGPNFTISKKEGALSMTSAQLERNKTR 154

Query: 80  EQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDL 139
           EQIEEEKKI+L+ RIKPLN+EG+S+ KLQ KATELW+ I+KLET+KYDLEERQKRQDYDL
Sbjct: 155 EQIEEEKKISLSFRIKPLNIEGFSVQKLQFKATELWDQIIKLETEKYDLEERQKRQDYDL 214

Query: 140 KELKERQKQQLRHKALKKGLDPEALTGKYPVK 171
           KELKERQKQQLRHKALKKGLDPEALTGKYP K
Sbjct: 215 KELKERQKQQLRHKALKKGLDPEALTGKYPPK 246

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328708481|ref|XP_003243702.1| PREDICTED: troponin T-like isoform 3 [Acyrthosiphon pisum]

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 126/152 (82%), Positives = 144/152 (94%)

Query: 20  KQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTK 79
           KQ+D+EEKR+RLEEAEKKRQAMMAALKEQTNKSKGPNFTI ++E  L++++AQLERNKT+
Sbjct: 104 KQKDIEEKRKRLEEAEKKRQAMMAALKEQTNKSKGPNFTISKKEGALSMTSAQLERNKTR 163

Query: 80  EQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDL 139
           EQIEEEKKI+L+ RIKPLN+EG+S+ KLQ KATELW+ I+KLET+KYDLEERQKRQDYDL
Sbjct: 164 EQIEEEKKISLSFRIKPLNIEGFSVQKLQFKATELWDQIIKLETEKYDLEERQKRQDYDL 223

Query: 140 KELKERQKQQLRHKALKKGLDPEALTGKYPVK 171
           KELKERQKQQLRHKALKKGLDPEALTGKYP K
Sbjct: 224 KELKERQKQQLRHKALKKGLDPEALTGKYPPK 255

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328708484|ref|XP_003243703.1| PREDICTED: troponin T-like isoform 4 [Acyrthosiphon pisum]

 Score =  257 bits (657), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 126/152 (82%), Positives = 144/152 (94%)

Query: 20  KQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTK 79
           KQ+D+EEKR+RLEEAEKKRQAMMAALKEQTNKSKGPNFTI ++E  L++++AQLERNKT+
Sbjct: 98  KQKDIEEKRKRLEEAEKKRQAMMAALKEQTNKSKGPNFTISKKEGALSMTSAQLERNKTR 157

Query: 80  EQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDL 139
           EQIEEEKKI+L+ RIKPLN+EG+S+ KLQ KATELW+ I+KLET+KYDLEERQKRQDYDL
Sbjct: 158 EQIEEEKKISLSFRIKPLNIEGFSVQKLQFKATELWDQIIKLETEKYDLEERQKRQDYDL 217

Query: 140 KELKERQKQQLRHKALKKGLDPEALTGKYPVK 171
           KELKERQKQQLRHKALKKGLDPEALTGKYP K
Sbjct: 218 KELKERQKQQLRHKALKKGLDPEALTGKYPPK 249

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193587311|ref|XP_001950442.1| PREDICTED: troponin T-like isoform 1 [Acyrthosiphon pisum]

 Score =  257 bits (656), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 126/152 (82%), Positives = 144/152 (94%)

Query: 20  KQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTK 79
           KQ+D+EEKR+RLEEAEKKRQAMMAALKEQTNKSKGPNFTI ++E  L++++AQLERNKT+
Sbjct: 89  KQKDIEEKRKRLEEAEKKRQAMMAALKEQTNKSKGPNFTISKKEGALSMTSAQLERNKTR 148

Query: 80  EQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDL 139
           EQIEEEKKI+L+ RIKPLN+EG+S+ KLQ KATELW+ I+KLET+KYDLEERQKRQDYDL
Sbjct: 149 EQIEEEKKISLSFRIKPLNIEGFSVQKLQFKATELWDQIIKLETEKYDLEERQKRQDYDL 208

Query: 140 KELKERQKQQLRHKALKKGLDPEALTGKYPVK 171
           KELKERQKQQLRHKALKKGLDPEALTGKYP K
Sbjct: 209 KELKERQKQQLRHKALKKGLDPEALTGKYPPK 240

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48428564|sp|Q9XZ71.1|TNNT_PERAM RecName: Full=Troponin T; Short=TnT gi|4928474|gb|AAD33603.1|AF133520_1 troponin T [Periplaneta americana]

 Score =  243 bits (620), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 134/171 (78%), Positives = 155/171 (90%), Gaps = 1/171 (0%)

Query: 1   MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 60
           MA+RKK+EEERR RE+EEKKQRD+EEKR+RLEEAEKKRQAMM ALKEQ  + KGPNFTIQ
Sbjct: 89  MAERKKQEEERRVREIEEKKQRDIEEKRRRLEEAEKKRQAMMQALKEQ-KQQKGPNFTIQ 147

Query: 61  RREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVK 120
           +++P   +S+AQ+ERNKTKEQ+EEEKKI+L+ RIKPL +E  ++ KL+ KATELW+ IVK
Sbjct: 148 KKDPSFNMSSAQIERNKTKEQLEEEKKISLSFRIKPLEIENLNVDKLKVKATELWDAIVK 207

Query: 121 LETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVK 171
           LET+KYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYP K
Sbjct: 208 LETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPPK 258

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|219893746|emb|CAP72282.1| troponin isoform 3, TpnT3 [Lethocerus indicus]

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/172 (79%), Positives = 161/172 (93%), Gaps = 2/172 (1%)

Query: 1   MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 60
           MA+RKK+EEERR REVEEKKQRD+EEKR+RLEEAEKKRQAMMAALK+Q+ KSKGPNFTI 
Sbjct: 85  MAERKKQEEERRIREVEEKKQRDIEEKRRRLEEAEKKRQAMMAALKDQS-KSKGPNFTIS 143

Query: 61  RREPGLT-LSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIV 119
           +++ G+T LS+AQLERNKTKEQ+EEEK+I+L+IRIKPLN++  ++ +L+ KATELWE IV
Sbjct: 144 KKDTGITNLSSAQLERNKTKEQLEEEKRISLSIRIKPLNIDNLNLDRLRLKATELWECIV 203

Query: 120 KLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVK 171
           KLET+KYDLEERQKRQ+YDLKEL+ERQKQQLRHKALKKGLDPEALTGKYP K
Sbjct: 204 KLETEKYDLEERQKRQEYDLKELEERQKQQLRHKALKKGLDPEALTGKYPPK 255

Source: Lethocerus indicus

Species: Lethocerus indicus

Genus: Lethocerus

Family: Belostomatidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|219893742|emb|CAP72280.1| troponin isoform 1, TpnT1 [Lethocerus indicus]

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/172 (79%), Positives = 161/172 (93%), Gaps = 2/172 (1%)

Query: 1   MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 60
           MA+RKK+EEERR REVEEKKQRD+EEKR+RLEEAEKKRQAMMAALK+Q+ KSKGPNFTI 
Sbjct: 68  MAERKKQEEERRIREVEEKKQRDIEEKRRRLEEAEKKRQAMMAALKDQS-KSKGPNFTIS 126

Query: 61  RREPGLT-LSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIV 119
           +++ G+T LS+AQLERNKTKEQ+EEEK+I+L+IRIKPLN++  ++ +L+ KATELWE IV
Sbjct: 127 KKDTGITNLSSAQLERNKTKEQLEEEKRISLSIRIKPLNIDNLNLDRLRLKATELWECIV 186

Query: 120 KLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVK 171
           KLET+KYDLEERQKRQ+YDLKEL+ERQKQQLRHKALKKGLDPEALTGKYP K
Sbjct: 187 KLETEKYDLEERQKRQEYDLKELEERQKQQLRHKALKKGLDPEALTGKYPPK 238

Source: Lethocerus indicus

Species: Lethocerus indicus

Genus: Lethocerus

Family: Belostomatidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|219893744|emb|CAP72281.1| troponin isoform 2, TpnT2 [Lethocerus indicus]

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/172 (79%), Positives = 161/172 (93%), Gaps = 2/172 (1%)

Query: 1   MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 60
           MA+RKK+EEERR REVEEKKQRD+EEKR+RLEEAEKKRQAMMAALK+Q+ KSKGPNFTI 
Sbjct: 9   MAERKKQEEERRIREVEEKKQRDIEEKRRRLEEAEKKRQAMMAALKDQS-KSKGPNFTIS 67

Query: 61  RREPGLT-LSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIV 119
           +++ G+T LS+AQLERNKTKEQ+EEEK+I+L+IRIKPLN++  ++ +L+ KATELWE IV
Sbjct: 68  KKDTGITNLSSAQLERNKTKEQLEEEKRISLSIRIKPLNIDNLNLDRLRLKATELWECIV 127

Query: 120 KLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVK 171
           KLET+KYDLEERQKRQ+YDLKEL+ERQKQQLRHKALKKGLDPEALTGKYP K
Sbjct: 128 KLETEKYDLEERQKRQEYDLKELEERQKQQLRHKALKKGLDPEALTGKYPPK 179

Source: Lethocerus indicus

Species: Lethocerus indicus

Genus: Lethocerus

Family: Belostomatidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076896|ref|XP_976237.1| PREDICTED: similar to upheld CG7107-PG isoform 8 [Tribolium castaneum]

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 137/171 (80%), Positives = 154/171 (90%), Gaps = 1/171 (0%)

Query: 1   MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 60
           MA+RKK+EEERR RE+EEKKQRD+EEKRQRLEEAEKKRQAMM ALK+Q NK+KGPNFTI 
Sbjct: 93  MAERKKQEEERRIREIEEKKQRDIEEKRQRLEEAEKKRQAMMQALKDQ-NKNKGPNFTIT 151

Query: 61  RREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVK 120
           +R+    LS AQLERNKTKEQ+EEEKKI+L+IRIKPL ++  S+ KL+ KA ELW+ IVK
Sbjct: 152 KRDASSNLSAAQLERNKTKEQLEEEKKISLSIRIKPLVLDNLSVDKLREKAQELWDCIVK 211

Query: 121 LETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVK 171
           LET+KYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYP K
Sbjct: 212 LETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPPK 262

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001997|gb|EEZ98444.1| hypothetical protein TcasGA2_TC000933 [Tribolium castaneum]

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 137/171 (80%), Positives = 154/171 (90%), Gaps = 1/171 (0%)

Query: 1   MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 60
           MA+RKK+EEERR RE+EEKKQRD+EEKRQRLEEAEKKRQAMM ALK+Q NK+KGPNFTI 
Sbjct: 92  MAERKKQEEERRIREIEEKKQRDIEEKRQRLEEAEKKRQAMMQALKDQ-NKNKGPNFTIT 150

Query: 61  RREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVK 120
           +R+    LS AQLERNKTKEQ+EEEKKI+L+IRIKPL ++  S+ KL+ KA ELW+ IVK
Sbjct: 151 KRDASSNLSAAQLERNKTKEQLEEEKKISLSIRIKPLVLDNLSVDKLREKAQELWDCIVK 210

Query: 121 LETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVK 171
           LET+KYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYP K
Sbjct: 211 LETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPPK 261

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
FB|FBgn0004169	397	up "upheld" [Drosophila melano	0.480	0.365	0.675	1.1e-46
WB|WBGene00003495	405	mup-2 [Caenorhabditis elegans	0.599	0.446	0.306	1.9e-16
WB|WBGene00006588	1178	tnt-3 [Caenorhabditis elegans	0.466	0.119	0.377	3.8e-15
WB|WBGene00006587	428	tnt-2 [Caenorhabditis elegans	0.476	0.336	0.346	4.7e-15
UNIPROTKB|Q8MKH7	250	Tnnt3 "Uncharacterized protein	0.443	0.536	0.342	1.3e-13
UNIPROTKB|Q8MKI1	266	Tnnt3 "Troponin T fast skeleta	0.443	0.503	0.342	1.3e-13
UNIPROTKB|Q8MKI3	271	Tnnt3 "Troponin T, fast skelet	0.443	0.494	0.342	1.3e-13
UNIPROTKB|F1PBY3	250	TNNT3 "Uncharacterized protein	0.443	0.536	0.335	2.7e-12
UNIPROTKB|E2RDZ8	261	TNNT3 "Uncharacterized protein	0.443	0.513	0.335	4.4e-12
RGD|3883	259	Tnnt3 "troponin T type 3 (skel	0.443	0.517	0.335	8.7e-12

FB|FBgn0004169 up "upheld" [Drosophila melanogaster (taxid:7227)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 100/148 (67%), Positives = 117/148 (79%)

Query:    23 DLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPG-LTLSTAQLERNXXXXX 81
             ++EEKR RLEEAEKKRQAM+ A+K++  K  GPNFTI +++ G L LS+A +ERN     
Sbjct:   114 EIEEKRMRLEEAEKKRQAMLQAMKDKDKK--GPNFTIAKKDAGVLGLSSAAMERNKTKEQ 171

Query:    82 XXXXXXXALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKE 141
                    +L+ RIKPL +EG+   KL+ KA ELWE IVKLET+KYDLEERQKRQDYDLKE
Sbjct:   172 LEEEKKISLSFRIKPLAIEGFGEAKLREKAQELWELIVKLETEKYDLEERQKRQDYDLKE 231

Query:   142 LKERQKQQLRHKALKKGLDPEALTGKYP 169
             LKERQKQQLRHKALKKGLDPEALTGKYP
Sbjct:   232 LKERQKQQLRHKALKKGLDPEALTGKYP 259

GO:0048644 "muscle organ morphogenesis" evidence=IMP

GO:0030239 "myofibril assembly" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0006874 "cellular calcium ion homeostasis" evidence=IMP

GO:0046716 "muscle cell homeostasis" evidence=IMP

GO:0005865 "striated muscle thin filament" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005523 "tropomyosin binding" evidence=ISS;NAS

GO:0005861 "troponin complex" evidence=ISS;NAS

GO:0007498 "mesoderm development" evidence=IEP

GO:0030240 "skeletal muscle thin filament assembly" evidence=IMP

WB|WBGene00003495 mup-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 209 (78.6 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 57/186 (30%), Positives = 86/186 (46%)

Query:    26 EKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRR--EPGLTLSTAQLERNXXXXXXX 83
             EK ++ EE  +++Q M  A   +     G NFT+  +  +     + AQ +         
Sbjct:   146 EKIRKNEEKVRRQQMMAGAFNGRVEAGAGRNFTVASKGDQAAQFGNLAQAKGGKDVMSKE 205

Query:    84 XXXXXALNIRI---KPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLK 140
                    N      +  +V G   + L+ +   L   IVKLE +KYDLE+R++RQDYD+K
Sbjct:   206 QMEDAKRNFLAAVCRVQDVSGLLPNDLKERIRGLHARIVKLEAEKYDLEKRRERQDYDMK 265

Query:   141 ELKERQKQQLRHKALKKGLDPEALTGKYPXXXXXXXXXXXXXXXXXDLEEKRQRLEEAEK 200
             EL ERQ+Q  R+KALKKGLDPE                           ++R   E  E+
Sbjct:   266 ELHERQRQAARNKALKKGLDPEEAASSVHPPKITTASKFDRQTDRRSYGDRRYLFENPEE 325

Query:   201 KRQAMM 206
             ++QA +
Sbjct:   326 EKQASL 331

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0006937 "regulation of muscle contraction" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0030728 "ovulation" evidence=IMP

GO:0007526 "larval somatic muscle development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0048598 "embryonic morphogenesis" evidence=IMP

GO:0005861 "troponin complex" evidence=ISS

WB|WBGene00006588 tnt-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 205 (77.2 bits), Expect = 3.8e-15, P = 3.8e-15
 Identities = 57/151 (37%), Positives = 81/151 (53%)

Query:    25 EEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRR----EPGLTLSTAQLERNXXXX 80
             +++R R EE  KK Q  ++    QT    G NFT+ ++    +    +  A+ E      
Sbjct:   969 QDRRNREEEKNKKNQ--LSGF--QTGGQGGRNFTVAKKAAQNDKFGNIVQAKQEMGMTKE 1024

Query:    81 XXXXXXXXALN-IRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDL 139
                      L  IR +  N       +L+AK  EL + I KLET+KYDLE+R +RQ+YD+
Sbjct:  1025 QQEDAKRAFLAAIRKEIPNASEVPQSELKAKIKELHQRICKLETEKYDLEKRHERQEYDM 1084

Query:   140 KELKERQKQQLRHKALKKGLDP-EALTGKYP 169
             KEL ERQ+Q  R+ ALKKG+DP E    +YP
Sbjct:  1085 KELNERQRQVTRNSALKKGIDPAEVGNTRYP 1115

GO:0019915 "lipid storage" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

WB|WBGene00006587 tnt-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 197 (74.4 bits), Expect = 4.7e-15, P = 4.7e-15
 Identities = 52/150 (34%), Positives = 76/150 (50%)

Query:    26 EKRQRLEEAEKKRQAMMAALK-EQTNKSKGPNFTIQRREPGLT----LSTAQLERNXXXX 80
             EK ++ EE  +++Q M  +          G NFT+  +         L+           
Sbjct:   155 EKARKNEEKSRRQQMMAGSFAGAAVGAPGGKNFTVSNKGDQAANFGNLAQGAKAEGLTKE 214

Query:    81 XXXXXXXXALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLK 140
                      LN+  K  +V     + L+ +   +   IVKLE +KYDLE+R++RQ+YDLK
Sbjct:   215 QQEDAKRAFLNVVCKAQDVSTLMPNDLKERIKGIHARIVKLEGEKYDLEKRRERQEYDLK 274

Query:   141 ELKERQKQQLRHKALKKGLDPE-ALTGKYP 169
             EL ERQ+Q  R+KALKKGLDPE A +  +P
Sbjct:   275 ELNERQRQVARNKALKKGLDPEEAASSVHP 304

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

UNIPROTKB|Q8MKH7 Tnnt3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 49/143 (34%), Positives = 72/143 (50%)

Query:    24 LEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNXXXXXXX 83
             L E++ R EE + KR+A     K++   S G N++         L+ A  +R        
Sbjct:   113 LAEEKARREEEDAKRRAEDDLKKKKALSSMGANYSSY-------LAKADQKRGKKQTARE 165

Query:    84 XXXXXALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELK 143
                   L  R KPLN++  S  KL+ KA ELW+T+ +LETDK++  E+ KRQ YD+  L+
Sbjct:   166 MKKK-VLAERRKPLNIDHLSEDKLRDKAKELWDTLYQLETDKFEYGEKLKRQKYDITNLR 224

Query:   144 ERQKQQLRHKALKKGLDPEALTG 166
              R  Q  +H   K G  P+   G
Sbjct:   225 SRIDQAQKHSK-KAGTAPKGKVG 246

GO:0005861 "troponin complex" evidence=IEA

UNIPROTKB|Q8MKI1 Tnnt3 "Troponin T fast skeletal muscle type" [Bos taurus (taxid:9913)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 49/143 (34%), Positives = 72/143 (50%)

Query:    24 LEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNXXXXXXX 83
             L E++ R EE + KR+A     K++   S G N++         L+ A  +R        
Sbjct:   129 LAEEKARREEEDAKRRAEDDLKKKKALSSMGANYSSY-------LAKADQKRGKKQTARE 181

Query:    84 XXXXXALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELK 143
                   L  R KPLN++  S  KL+ KA ELW+T+ +LETDK++  E+ KRQ YD+  L+
Sbjct:   182 MKKK-VLAERRKPLNIDHLSEDKLRDKAKELWDTLYQLETDKFEYGEKLKRQKYDITNLR 240

Query:   144 ERQKQQLRHKALKKGLDPEALTG 166
              R  Q  +H   K G  P+   G
Sbjct:   241 SRIDQAQKHSK-KAGTAPKGKVG 262

GO:0005861 "troponin complex" evidence=IEA

UNIPROTKB|Q8MKI3 Tnnt3 "Troponin T, fast skeletal muscle" [Bos taurus (taxid:9913)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 49/143 (34%), Positives = 72/143 (50%)

Query:    24 LEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNXXXXXXX 83
             L E++ R EE + KR+A     K++   S G N++         L+ A  +R        
Sbjct:   134 LAEEKARREEEDAKRRAEDDLKKKKALSSMGANYSSY-------LAKADQKRGKKQTARE 186

Query:    84 XXXXXALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELK 143
                   L  R KPLN++  S  KL+ KA ELW+T+ +LETDK++  E+ KRQ YD+  L+
Sbjct:   187 MKKK-VLAERRKPLNIDHLSEDKLRDKAKELWDTLYQLETDKFEYGEKLKRQKYDITNLR 245

Query:   144 ERQKQQLRHKALKKGLDPEALTG 166
              R  Q  +H   K G  P+   G
Sbjct:   246 SRIDQAQKHSK-KAGTAPKGKVG 267

GO:0048306 "calcium-dependent protein binding" evidence=IEA

GO:0043462 "regulation of ATPase activity" evidence=IEA

GO:0031013 "troponin I binding" evidence=IEA

GO:0030899 "calcium-dependent ATPase activity" evidence=IEA

GO:0030172 "troponin C binding" evidence=IEA

GO:0006942 "regulation of striated muscle contraction" evidence=IEA

GO:0005861 "troponin complex" evidence=IEA

GO:0005523 "tropomyosin binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003009 "skeletal muscle contraction" evidence=IEA

UNIPROTKB|F1PBY3 TNNT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 171 (65.3 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 48/143 (33%), Positives = 71/143 (49%)

Query:    24 LEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNXXXXXXX 83
             L E++ R EE + KR+A     K++   S G N++         L+ A  +R        
Sbjct:   113 LAEEKARREEEDAKRRAEDDLKKKKALSSMGANYSSY-------LAKADQKRGKKQTARE 165

Query:    84 XXXXXALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELK 143
                   L  R KPLN++  S  KL+ KA ELW+T+ +LETDK++  E+ KRQ YD+  L+
Sbjct:   166 MKKK-VLAERRKPLNIDHLSEDKLRDKAKELWDTLYQLETDKFEFGEKLKRQKYDITNLR 224

Query:   144 ERQKQQLRHKALKKGLDPEALTG 166
              R  Q  +H   K G   +   G
Sbjct:   225 SRIDQAQKHSK-KAGAPAKGKVG 246

GO:0005861 "troponin complex" evidence=IEA

UNIPROTKB|E2RDZ8 TNNT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 171 (65.3 bits), Expect = 4.4e-12, P = 4.4e-12
 Identities = 48/143 (33%), Positives = 71/143 (49%)

Query:    24 LEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNXXXXXXX 83
             L E++ R EE + KR+A     K++   S G N++         L+ A  +R        
Sbjct:   124 LAEEKARREEEDAKRRAEDDLKKKKALSSMGANYSSY-------LAKADQKRGKKQTARE 176

Query:    84 XXXXXALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELK 143
                   L  R KPLN++  S  KL+ KA ELW+T+ +LETDK++  E+ KRQ YD+  L+
Sbjct:   177 MKKK-VLAERRKPLNIDHLSEDKLRDKAKELWDTLYQLETDKFEFGEKLKRQKYDITNLR 235

Query:   144 ERQKQQLRHKALKKGLDPEALTG 166
              R  Q  +H   K G   +   G
Sbjct:   236 SRIDQAQKHSK-KAGAPAKGKVG 257

GO:0005861 "troponin complex" evidence=IEA

RGD|3883 Tnnt3 "troponin T type 3 (skeletal, fast)" [Rattus norvegicus (taxid:10116)]

 Score = 169 (64.5 bits), Expect = 8.7e-12, P = 8.7e-12
 Identities = 48/143 (33%), Positives = 71/143 (49%)

Query:    24 LEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNXXXXXXX 83
             L E++ R EE + KR+A     K++   S G N++         L+ A  +R        
Sbjct:   122 LAEEKARREEEDAKRRAEDDLKKKKALSSMGANYSSY-------LAKADQKRGKKQTARE 174

Query:    84 XXXXXALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELK 143
                   L  R KPLN++  S  KL+ KA ELW+T+ +LETDK++  E+ KRQ YD+  L+
Sbjct:   175 MKKKI-LAERRKPLNIDHLSDDKLRDKAKELWDTLYQLETDKFEFGEKLKRQKYDITTLR 233

Query:   144 ERQKQQLRHKALKKGLDPEALTG 166
              R  Q  +H   K G   +   G
Sbjct:   234 SRIDQAQKHSK-KAGATAKGKVG 255

GO:0003009 "skeletal muscle contraction" evidence=ISO

GO:0005523 "tropomyosin binding" evidence=ISO

GO:0005861 "troponin complex" evidence=ISO;IDA;TAS

GO:0006936 "muscle contraction" evidence=TAS

GO:0006937 "regulation of muscle contraction" evidence=IDA

GO:0006942 "regulation of striated muscle contraction" evidence=ISO;IMP

GO:0030172 "troponin C binding" evidence=ISO

GO:0031013 "troponin I binding" evidence=ISO

GO:0031014 "troponin T binding" evidence=NAS

GO:0043462 "regulation of ATPase activity" evidence=ISO

GO:0048306 "calcium-dependent protein binding" evidence=ISO

GO:0003779 "actin binding" evidence=ISO

GO:0030899 "calcium-dependent ATPase activity" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P19351	TNNT_DROME	No assigned EC number	0.7674	0.5596	0.4256	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
KOG3634|consensus	361		100.0
KOG3634|consensus	361		99.92
PF00992	132	Troponin: Troponin; InterPro: IPR001978 The tropon	99.87
KOG3977|consensus	221		99.71
PF00992	132	Troponin: Troponin; InterPro: IPR001978 The tropon	99.53
KOG3977|consensus	221		98.78

>KOG3634|consensus

Probab=100.00  E-value=7.4e-36  Score=282.73  Aligned_cols=176  Identities=47%  Similarity=0.653  Sum_probs=154.1

Q ss_pred             ChhhhhHHHHHHhhHHHHHhhhHHH--HHHHhhHHHHHHHHHHHHHhhhhhhcCCCCCcccccCCCc----chhhHHHHh
Q psy9780           1 MAQRKKEEEERRQREVEEKKQRDLE--EKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPG----LTLSTAQLE   74 (302)
Q Consensus         1 ~~er~~~eeeRr~~EeEErrq~~~~--E~r~r~EEee~Kk~~~~~a~k~~~~~~~g~nf~i~k~~~g----~~L~kA~~~   74 (302)
                      |++++++.++|++.++++++.+..-  +.+.|++|+..+|++||.+.+..  ..+|.||+|.+++.+    |+++.|+++
T Consensus       124 ~~~rkr~~e~RR~~~aeerk~r~~k~de~r~r~~Eek~Rr~~m~~~~~~~--~~~gknftvakk~a~~~~fgn~~qak~e  201 (361)
T KOG3634|consen  124 LAERKRRIEERRREEAEERKIREAKEDERRIRLEEEKSRRQEMMAGRFAE--DDAGKNFTVAKKGAQNDGFGNIVQAKQE  201 (361)
T ss_pred             HHHHHhhHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc--ccccCcceeecccccchhHHHHHHHHHH
Confidence            5789999999999999999944333  33778888889999999998765  568999999999643    677777889


Q ss_pred             hhhhHHHHHHHH-HHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHHHHHHHHhhh
Q psy9780          75 RNKTKEQIEEEK-KIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRHK  153 (302)
Q Consensus        75 ~~~~keq~~eeK-kk~LaeR~kpL~id~l~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~Rv~dl~kfk  153 (302)
                      ++++|+|++.+| ..+|+.|.+|||||+|++++|+++|++||+|||+||++||||+.++++|+|||++||+|++|.+++.
T Consensus       202 ~~mtKeQqEdakk~~l~aiRkk~~~~~~~~e~~LkeKiKELhqrI~kLE~EKyDLekR~eRQeYDlkeL~eRqrq~~r~~  281 (361)
T KOG3634|consen  202 MGMTKEQQEDAKKKFLLAIRKKPLNISELPENDLKEKIKELHQRICKLETEKYDLEKRHERQEYDLKELNERQRQVQRNS  281 (361)
T ss_pred             hcccHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhccHHHHHHHHHHHHHHH
Confidence            999999999665 5555788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCchhh-cCCCCchHHHHHHH
Q psy9780         154 ALKKGLDPEAL-TGKYPVKEEERRQR  178 (302)
Q Consensus       154 ~~~~g~dp~~~-~~~~p~k~~er~~r  178 (302)
                      ++++||||... ++-|||+++..|.-
T Consensus       282 ~~k~g~d~~~v~g~~~p~k~~~~sk~  307 (361)
T KOG3634|consen  282 ALKKGLDPEEVTGRWKPPKVQISSKY  307 (361)
T ss_pred             HhhcCCChhhhcCCCCCceeehhhhh
Confidence            99999999866 77789999887753

>KOG3634|consensus

Probab=99.92  E-value=2.8e-25  Score=210.99  Aligned_cols=162  Identities=41%  Similarity=0.597  Sum_probs=127.9

Q ss_pred             hhhhhHHHHHHHHHHHHhhhhhhcCCCchhhcCCCCchHHHHHHHHHHHHhhhHH--HHHHHchHHHHHHHHHHHHHhhh
Q psy9780         134 RQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEEERRQREVEEKKQRDL--EEKRQRLEEAEKKRQAMMAALKE  211 (302)
Q Consensus       134 rq~yeI~eL~~Rv~dl~kfk~~~~g~dp~~~~~~~p~k~~er~~re~ee~rq~~~--~e~r~r~EEe~~kk~a~~~a~k~  211 (302)
                      +..-+++.|...+....--+.    -++ ..+..+.--+.+|+..++++.+.+..  .+.+.|++|+..+|++||++.+.
T Consensus        98 r~E~eL~eLkekq~~r~~eR~----~eE-~e~~~rkr~~e~RR~~~aeerk~r~~k~de~r~r~~Eek~Rr~~m~~~~~~  172 (361)
T KOG3634|consen   98 REEKELKELKEKQEKRKLERE----EEE-EELAERKRRIEERRREEAEERKIREAKEDERRIRLEEEKSRRQEMMAGRFA  172 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh----hcH-HHHHHHHhhHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence            445678888887765432222    122 23444555677888888888874443  34588899999999999987765


Q ss_pred             hhhcCCCCCcccccCCcc----cchhHHHHHhhhcHHHHHHH-HHhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHhhh
Q psy9780         212 QTNKSKGPNFTIQRREPG----LTLSTAQLERNKTKEQIEEE-KKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLE  286 (302)
Q Consensus       212 ~~~~~~g~nf~~~kk~~~----~~L~ka~~~~~~~k~q~~ee-Kkk~LaeR~kpL~id~l~~d~LrekakELh~~i~~LE  286 (302)
                      .  ...|.||+|++++.+    +++++|.++++++|+|++.+ |..+|+.|.+|||||+|++++|+++|++||+|||+||
T Consensus       173 ~--~~~gknftvakk~a~~~~fgn~~qak~e~~mtKeQqEdakk~~l~aiRkk~~~~~~~~e~~LkeKiKELhqrI~kLE  250 (361)
T KOG3634|consen  173 E--DDAGKNFTVAKKGAQNDGFGNIVQAKQEMGMTKEQQEDAKKKFLLAIRKKPLNISELPENDLKEKIKELHQRICKLE  250 (361)
T ss_pred             c--ccccCcceeecccccchhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            4  567999999999753    36777888999999999955 5556689999999999999999999999999999999


Q ss_pred             hhhchHHHHhhhccCC
Q psy9780         287 TDKYDLEERQKRQDYD  302 (302)
Q Consensus       287 ~EKyDle~k~~rq~Ye  302 (302)
                      ++||||+.++++|+||
T Consensus       251 ~EKyDLekR~eRQeYD  266 (361)
T KOG3634|consen  251 TEKYDLEKRHERQEYD  266 (361)
T ss_pred             HhhhhHHHHHHhhhcc
Confidence            9999999999999998

>PF00992 Troponin: Troponin; InterPro: IPR001978 The troponin (Tn) complex regulates Ca2+ induced muscle contraction

Probab=99.87  E-value=7.6e-23  Score=173.95  Aligned_cols=126  Identities=37%  Similarity=0.476  Sum_probs=111.0

Q ss_pred             cchhhHHHHhhhhhHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHH
Q psy9780          65 GLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKE  144 (302)
Q Consensus        65 g~~L~kA~~~~~~~keq~~eeKkk~LaeR~kpL~id~l~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~  144 (302)
                      .+++.+|..++..+.++.++++.+||++||||++|+|+|.++|+++|++||++|+.|++++||++.+|.+++|||++|+.
T Consensus         6 ~L~~~kA~~el~~e~~~keeek~~~L~eri~~l~~~g~~~~eL~~~~k~lh~ri~~leeEryd~E~kv~k~~~Ei~elk~   85 (132)
T PF00992_consen    6 DLLLLKAKIELHFEQRKKEEEKRRYLAERIPPLKLDGLSRAELQELCKELHERIDKLEEERYDLEEKVAKQDYEIEELKK   85 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHCCCTSS--GTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHh
Confidence            46788999999988898999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh-hhhhhcCCCchhhcCCCCchHHHHHHHHHHHHhhhHHHHHHHchHHHHHHHHHHHHHhhhhhhcCCCCCccc
Q psy9780         145 RQKQQLR-HKALKKGLDPEALTGKYPVKEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTI  223 (302)
Q Consensus       145 Rv~dl~k-fk~~~~g~dp~~~~~~~p~k~~er~~re~ee~rq~~~~e~r~r~EEe~~kk~a~~~a~k~~~~~~~g~nf~~  223 (302)
                      +|+|+++ |++      |+                                                             
T Consensus        86 kv~d~rgkfkk------p~-------------------------------------------------------------   98 (132)
T PF00992_consen   86 KVNDLRGKFKK------PT-------------------------------------------------------------   98 (132)
T ss_dssp             CCCCCCCSHCC------HH-------------------------------------------------------------
T ss_pred             HHHHHcccccc------hH-------------------------------------------------------------
Confidence            9966654 555      31                                                             


Q ss_pred             ccCCcccchhHHHHHhhhcHHHHHHHHHhhhhhccCCCCCCCCChHHHHHHHHHHH
Q psy9780         224 QRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELW  279 (302)
Q Consensus       224 ~kk~~~~~L~ka~~~~~~~k~q~~eeKkk~LaeR~kpL~id~l~~d~LrekakELh  279 (302)
                                            ....++.+++.+..||+++|++.++|++.++++|
T Consensus        99 ----------------------lkkvkk~~~~~~~~~l~~k~~~~~~lr~~lK~vk  132 (132)
T PF00992_consen   99 ----------------------LKKVKKSADAMRRKLLGIKHKVSMDLRANLKEVK  132 (132)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHH
T ss_pred             ----------------------HHHHHHHHHHHHHhhhCcccccHHHHHHHhhccC
Confidence                                  1235667788899999999999999999999998

Tn contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin [, , ].; PDB: 1J1D_C 1MXL_I 1LXF_I 2KRD_I 1J1E_F 2L1R_B 2KGB_I 1YTZ_I 1YV0_I 1VDJ_A ....

>KOG3977|consensus

Probab=99.71  E-value=8.2e-18  Score=150.29  Aligned_cols=102  Identities=24%  Similarity=0.291  Sum_probs=89.9

Q ss_pred             cchhhHHHHhhhhhHHHHHHHHHHHhhhccCCC-CCCCCCHH-HHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHH
Q psy9780          65 GLTLSTAQLERNKTKEQIEEEKKIALNIRIKPL-NVEGWSIH-KLQAKATELWETIVKLETDKYDLEERQKRQDYDLKEL  142 (302)
Q Consensus        65 g~~L~kA~~~~~~~keq~~eeKkk~LaeR~kpL-~id~l~~~-~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL  142 (302)
                      .++|++|...+..+....+.+|.+||++|..|| |+++|+.. .|+++|.+||.+|+.||+|+||++.+|.....+|++|
T Consensus        49 kLlm~kAaedLkqqq~~kEqErqr~LaeR~i~lp~~d~l~d~g~Lq~ly~~l~arv~~leEEkYDi~~~v~qt~~EIndL  128 (221)
T KOG3977|consen   49 KLLMQKAAEDLKQQQELKEQERQRYLAERTIPLPDVDSLDDRGLLQDLYRELHARVDALEEEKYDIEAKVTQTETEINDL  128 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCcccchHHHHHHHHHHHHHHHHHHHhhcchhheeehhhhhHHHH
Confidence            489999998888766667799999999998775 88877754 4899999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-hhhhhcCCCch-hhcCCCCchH
Q psy9780         143 KERQKQQLR-HKALKKGLDPE-ALTGKYPVKE  172 (302)
Q Consensus       143 ~~Rv~dl~k-fk~~~~g~dp~-~~~~~~p~k~  172 (302)
                      ++.||||+| |++      |+ ..+|+|..+.
T Consensus       129 tikvnDLRGKFvk------PtLkkVsks~~kf  154 (221)
T KOG3977|consen  129 TIKVNDLRGKFVK------PTLKKVSKSADKF  154 (221)
T ss_pred             HHHHHHhcccccC------ccHHHHHhhhHHH
Confidence            999999996 999      77 6688776665

>PF00992 Troponin: Troponin; InterPro: IPR001978 The troponin (Tn) complex regulates Ca2+ induced muscle contraction

Probab=99.53  E-value=7.3e-15  Score=125.15  Aligned_cols=72  Identities=43%  Similarity=0.601  Sum_probs=66.3

Q ss_pred             chhHHHHHhhhcHHHHHHHHHhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHhhhhhhchHHHHhhhccCC
Q psy9780         231 TLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD  302 (302)
Q Consensus       231 ~L~ka~~~~~~~k~q~~eeKkk~LaeR~kpL~id~l~~d~LrekakELh~~i~~LE~EKyDle~k~~rq~Ye  302 (302)
                      ++.+|..++..+.++.++++.+||++||||++|+|++.++|+++|++||++|+.|++++||+++++.+++||
T Consensus         8 ~~~kA~~el~~e~~~keeek~~~L~eri~~l~~~g~~~~eL~~~~k~lh~ri~~leeEryd~E~kv~k~~~E   79 (132)
T PF00992_consen    8 LLLKAKIELHFEQRKKEEEKRRYLAERIPPLKLDGLSRAELQELCKELHERIDKLEEERYDLEEKVAKQDYE   79 (132)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHCCCTSS--GTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            678888888888888889999999999999999999999999999999999999999999999999999985

Tn contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin [, , ].; PDB: 1J1D_C 1MXL_I 1LXF_I 2KRD_I 1J1E_F 2L1R_B 2KGB_I 1YTZ_I 1YV0_I 1VDJ_A ....

>KOG3977|consensus

Probab=98.78  E-value=4.9e-09  Score=94.40  Aligned_cols=71  Identities=28%  Similarity=0.376  Sum_probs=56.9

Q ss_pred             cchhHHHHHhhhcHHHHHHHHHhhhhhccCCC-CCCCCCh-HHHHHHHHHHHHHHHhhhhhhchHHHHhhhcc
Q psy9780         230 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPL-NVEGWSI-HKLQAKATELWETIVKLETDKYDLEERQKRQD  300 (302)
Q Consensus       230 ~~L~ka~~~~~~~k~q~~eeKkk~LaeR~kpL-~id~l~~-d~LrekakELh~~i~~LE~EKyDle~k~~rq~  300 (302)
                      .+|++|.+.+...-...+.+|.+||++|.-|| |+++++. ..|+++|.+||.+|+.||+|+||++.+|....
T Consensus        50 Llm~kAaedLkqqq~~kEqErqr~LaeR~i~lp~~d~l~d~g~Lq~ly~~l~arv~~leEEkYDi~~~v~qt~  122 (221)
T KOG3977|consen   50 LLMQKAAEDLKQQQELKEQERQRYLAERTIPLPDVDSLDDRGLLQDLYRELHARVDALEEEKYDIEAKVTQTE  122 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCcccchHHHHHHHHHHHHHHHHHHHhhcchhheeehhh
Confidence            47889988887644445688999999996664 5655543 33899999999999999999999999887643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	302
1ytz_T	107	Crystal Structure Of Skeletal Muscle Troponin In Th		7e-06
1ytz_T	107	Crystal Structure Of Skeletal Muscle Troponin In Th		3e-04
2w49_1	90	Isometrically Contracting Insect Asynchronous Fligh		1e-05
2w49_1	90	Isometrically Contracting Insect Asynchronous Fligh		3e-04
1j1d_B	106	Crystal Structure Of The 46kda Domain Of Human Card		5e-04

>pdb|1YTZ|T Chain T, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+- Activated State Length = 107

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 93  RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRH 152
           R KPLN++  +  KL+ KA ELW+ + +L+T+KYD  E+ KR+ Y++  L+ R  Q  +H
Sbjct: 33  RRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQAQKH 92
Query: 153 --KALKKG 158
             KA  KG
Sbjct: 93  SKKAGAKG 100

>pdb|1YTZ|T Chain T, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+- Activated State Length = 107

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 257 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD 302
           R KPLN++  +  KL+ KA ELW+ + +L+T+KYD  E+ KR+ Y+
Sbjct: 33  RRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYE 78

>pdb|2W49|1 Chain 1, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 90

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 93  RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRH 152
           R KPLN++  +  KL+ KA ELW+ + +L+T+KYD  E+ KR+ Y++  L+ R  Q  +H
Sbjct: 30  RRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQAQKH 89

>pdb|2W49|1 Chain 1, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 90

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 257 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD 302
           R KPLN++  +  KL+ KA ELW+ + +L+T+KYD  E+ KR+ Y+
Sbjct: 30  RRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYE 75

>pdb|1J1D|B Chain B, Crystal Structure Of The 46kda Domain Of Human Cardiac Troponin In The Ca2+ Saturated Form Length = 106

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 93  RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKER 145
           R K L ++  +  +L+ KA ELW+TI  LE +K+DL+E+ K+Q Y++  L+ R
Sbjct: 33  RRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNR 85

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
1ytz_T	107	Troponin T; muscle, THIN filament, actin binding,	1e-14
1ytz_T	107	Troponin T; muscle, THIN filament, actin binding,	3e-10
1j1d_B	106	Troponin T, TNT; THIN filament, muscle regulation,	1e-12
1j1d_B	106	Troponin T, TNT; THIN filament, muscle regulation,	2e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-06
1j1d_C	133	Troponin I, TNI; THIN filament, muscle regulation,	2e-09
1j1d_C	133	Troponin I, TNI; THIN filament, muscle regulation,	8e-08
1j1e_C	180	Troponin I, TNI; THIN filament, muscle regulation,	2e-07
1j1e_C	180	Troponin I, TNI; THIN filament, muscle regulation,	4e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-07
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	7e-06
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-05

>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1 Length = 107

 Score = 68.0 bits (166), Expect = 1e-14
 Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 2/98 (2%)

Query: 71  AQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEE 130
              ++   K+   E KK  L  R KPLN++  +  KL+ KA ELW+ + +L+T+KYD  E
Sbjct: 11  KADQKRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAE 70

Query: 131 RQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKY 168
           + KR+ Y++  L+ R  Q  +H   KK      + G++
Sbjct: 71  QIKRKKYEIVTLRNRIDQAQKHS--KKAGAKGKVGGRW 106

>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1 Length = 107

 Score = 55.7 bits (134), Expect = 3e-10
 Identities = 26/68 (38%), Positives = 41/68 (60%)

Query: 235 AQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEE 294
              ++   K+   E KK  L  R KPLN++  +  KL+ KA ELW+ + +L+T+KYD  E
Sbjct: 11  KADQKRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAE 70

Query: 295 RQKRQDYD 302
           + KR+ Y+
Sbjct: 71  QIKRKKYE 78

>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B Length = 106

 Score = 62.3 bits (151), Expect = 1e-12
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 65  GLTLSTAQLERNKTKEQIEEEKKIA-LNIRIKPLNVEGWSIHKLQAKATELWETIVKLET 123
           G     AQ ER   K Q E EKK   L  R K L ++  +  +L+ KA ELW+TI  LE 
Sbjct: 4   GYIQKQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEA 63

Query: 124 DKYDLEERQKRQDYDLKELKERQKQQLRHKALKK 157
           +K+DL+E+ K+Q Y++  L+ R     +    + 
Sbjct: 64  EKFDLQEKFKQQKYEINVLRNRINDNQKVSKTRG 97

>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B Length = 106

 Score = 53.1 bits (127), Expect = 2e-09
 Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 229 GLTLSTAQLERNKTKEQIEEEKKIA-LNIRIKPLNVEGWSIHKLQAKATELWETIVKLET 287
           G     AQ ER   K Q E EKK   L  R K L ++  +  +L+ KA ELW+TI  LE 
Sbjct: 4   GYIQKQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEA 63

Query: 288 DKYDLEERQKRQDYD 302
           +K+DL+E+ K+Q Y+
Sbjct: 64  EKFDLQEKFKQQKYE 78

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 58/259 (22%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 1    MAQRKKEEEERRQREVEEKK--QRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFT 58
            M  R +EEEER Q+   EKK  Q+ + +  ++LEE E  RQ +         K K     
Sbjct: 932  MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991

Query: 59   IQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETI 118
            I   E      T + +  + +             + K L       +K ++  +EL   +
Sbjct: 992  ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL---KNKHESMISELEVRL 1048

Query: 119  VKLETDKYDLEERQKRQDYDLKELK------ERQKQQLRHKALKKGLDPEALTGKYPVKE 172
             K E  + +LE+ +++ + +  +L       + Q  +L+ +  KK  + +A   +    E
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARL---E 1105

Query: 173  EERRQREVEEKKQRDLEEKRQRL-EEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLT 231
            +E  Q+    KK R+LE     L E+ E ++ A   A K++ + S+         E  L 
Sbjct: 1106 DETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165

Query: 232  LSTAQLERNKTKEQIEEEK 250
             +  Q E   +  + +++K
Sbjct: 1166 TTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.5 bits (126), Expect = 8e-08
 Identities = 54/300 (18%), Positives = 116/300 (38%), Gaps = 24/300 (8%)

Query: 2    AQRKKEEEERRQREVEEKKQRDLEEK--RQRLEEAEKKRQAMMAALKEQTNKSKGPNFTI 59
             + ++++ E   +E+E+K  +  EEK   Q   +AE +  A    ++ +    K      
Sbjct: 869  TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK-----Q 923

Query: 60   QRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIV 119
            +  E    +     E  +  +Q++ EKK                +  L+ +  E      
Sbjct: 924  ELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ-----------MLDLEEQLEEEEAARQ 972

Query: 120  KLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEEERRQRE 179
            KL+ +K   + + K+ + D+  ++++  +  + + L +    +  T     +E+ +   +
Sbjct: 973  KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032

Query: 180  VEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLT-----LST 234
            ++ K +  + E   RL++ EK RQ +    ++   +S   +  I   +  +      L+ 
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092

Query: 235  AQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEE 294
             + E      ++E+E     N   K   +E   I  LQ           K E  K DL E
Sbjct: 1093 KEEELQAALARLEDETSQKNNALKKIRELES-HISDLQEDLESEKAARNKAEKQKRDLSE 1151

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 49/284 (17%), Positives = 118/284 (41%), Gaps = 46/284 (16%)

Query: 27   KRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEK 86
            K  R EE  + +   +   KE+  K++      + +E     +    E+N  +E+++ E 
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEA-----ELKELEQKHTQLCEEKNLLQEKLQAET 905

Query: 87   KIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQ 146
            ++                        E  E  V+L   K +LEE     +  ++E +ER 
Sbjct: 906  ELYA----------------------EAEEMRVRLAAKKQELEEILHEMEARIEEEEERS 943

Query: 147  KQQLRHKALKKGLDPEALTGKYPVKEEERRQREVEEKKQ------RDLEEKRQRLEEAEK 200
            +Q    +A KK +  + L  +  ++EEE  +++++ +K       + +E+    +E+   
Sbjct: 944  QQL---QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNN 1000

Query: 201  KRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLER--NKTKEQIEEEKKIALNIRI 258
            K       L+E+ +         + +   LT    + E   ++ + ++++E+K    +  
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060

Query: 259  KPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD 302
                       KL+ ++++L E I +L+    +L+ +  +++ +
Sbjct: 1061 I--------KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 59.0 bits (143), Expect = 6e-10
 Identities = 28/197 (14%), Positives = 77/197 (39%), Gaps = 25/197 (12%)

Query: 3    QRKKEEEERRQREVEEKK---QRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTI 59
             +K + E R     ++     +  + + +++++E  K+ ++++  +             +
Sbjct: 906  LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965

Query: 60   QRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIV 119
            +           +L  ++ + +    + ++L   I  L  E   +H+ Q +   + E   
Sbjct: 966  RSDV-------ERLRMSEEEAKNATNRVLSLQEEIAKLRKE---LHQTQTEKKTIEEWAD 1015

Query: 120  KLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEEERRQRE 179
            K + +   L    K Q+  LK  KE   +++  +A +              +  E++  E
Sbjct: 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEI------------TETMEKKLVE 1063

Query: 180  VEEKKQRDLEEKRQRLE 196
              ++ + DL ++R R +
Sbjct: 1064 ETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 34/248 (13%), Positives = 75/248 (30%), Gaps = 17/248 (6%)

Query: 6    KEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPG 65
              +   R   V  K Q  L E +  + +   +                     I   +  
Sbjct: 844  ALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA-------IVYLQCC 896

Query: 66   LTLSTAQLERNKTKEQIE-----EEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVK 120
                 A+ E  K K +       ++  I L  +I  L      I +   +   L E +  
Sbjct: 897  YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQ---RKIDEQNKEYKSLLEKMNN 953

Query: 121  LETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKY-PVKEEERRQRE 179
            LE       E+ +     L  + E + +   ++ L    +   L  +    + E++   E
Sbjct: 954  LEITYSTETEKLRSDVERL-RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012

Query: 180  VEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLER 239
              +K + + E+    L+E     +     L  + +           ++        +L+ 
Sbjct: 1013 WADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDL 1072

Query: 240  NKTKEQIE 247
            N  + + +
Sbjct: 1073 NDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 29/246 (11%), Positives = 81/246 (32%), Gaps = 25/246 (10%)

Query: 56   NFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNI--RIKPLNVEGWSIHKLQAKATE 113
              T  RR     +          +++ +  +   + +   ++   V       L+   + 
Sbjct: 809  YATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSI 868

Query: 114  LWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEE 173
            + +  V+    +     R  +    L+    R   +   K LK     EA          
Sbjct: 869  IIQKHVRGWLAR-VHYHRTLKAIVYLQCCYRRMMAKRELKKLKI----EA--------RS 915

Query: 174  ERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLS 233
              R +++    +  + + +++++E  K+ ++++  +             ++         
Sbjct: 916  VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV------ 969

Query: 234  TAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLE 293
              +L  ++ + +    + ++L   I  L  E   +H+ Q +   + E   K + +   L 
Sbjct: 970  -ERLRMSEEEAKNATNRVLSLQEEIAKLRKE---LHQTQTEKKTIEEWADKYKHETEQLV 1025

Query: 294  ERQKRQ 299
               K Q
Sbjct: 1026 SELKEQ 1031

>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2 Length = 133

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 22/80 (27%), Positives = 43/80 (53%)

Query: 66  LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDK 125
           L L  A+ E  +  E+   EK  AL+ R +PL + G    +LQ  A +L   + K++ ++
Sbjct: 22  LLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEER 81

Query: 126 YDLEERQKRQDYDLKELKER 145
           YD+E +  +   ++ +L ++
Sbjct: 82  YDIEAKVTKNITEIADLTQK 101

>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2 Length = 133

 Score = 49.5 bits (118), Expect = 8e-08
 Identities = 21/73 (28%), Positives = 38/73 (52%)

Query: 230 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDK 289
           L L  A+ E  +  E+   EK  AL+ R +PL + G    +LQ  A +L   + K++ ++
Sbjct: 22  LLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEER 81

Query: 290 YDLEERQKRQDYD 302
           YD+E +  +   +
Sbjct: 82  YDIEAKVTKNITE 94

>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2 Length = 180

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 22/80 (27%), Positives = 43/80 (53%)

Query: 66  LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDK 125
           L L  A+ E  +  E+   EK  AL+ R +PL + G    +LQ  A +L   + K++ ++
Sbjct: 22  LLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEER 81

Query: 126 YDLEERQKRQDYDLKELKER 145
           YD+E +  +   ++ +L ++
Sbjct: 82  YDIEAKVTKNITEIADLTQK 101

>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2 Length = 180

 Score = 45.3 bits (107), Expect = 4e-06
 Identities = 21/73 (28%), Positives = 38/73 (52%)

Query: 230 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDK 289
           L L  A+ E  +  E+   EK  AL+ R +PL + G    +LQ  A +L   + K++ ++
Sbjct: 22  LLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEER 81

Query: 290 YDLEERQKRQDYD 302
           YD+E +  +   +
Sbjct: 82  YDIEAKVTKNITE 94

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 21/201 (10%), Positives = 52/201 (25%), Gaps = 24/201 (11%)

Query: 3    QRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRR 62
              + +    ++            E        EK  Q    AL+ +  + K     +Q+ 
Sbjct: 832  SLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKY 891

Query: 63   EPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLE 122
                          K  E     K + L               +     T +   +  LE
Sbjct: 892  N----------RILKKLENWATTKSVYLGSN------------ETGDSITAVQAKLKNLE 929

Query: 123  TDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEEERRQREVEE 182
                + +  + + + DL  +  +  +   +   +     +    +       +   E  +
Sbjct: 930  AFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQ--QWTGVKSSAETYK 987

Query: 183  KKQRDLEEKRQRLEEAEKKRQ 203
                   E+ Q++E+      
Sbjct: 988  NTLLAELERLQKIEDLHHHHH 1008

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 41/253 (16%), Positives = 87/253 (34%), Gaps = 19/253 (7%)

Query: 24   LEEKR-QRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERN--KTKE 80
            +EE R QRL   + K   +  A +           +++ R+ G ++ + Q   N  K  +
Sbjct: 754  IEEAREQRLGSEQTKSDYLKRANELVQWI-NDKQASLESRDFGDSIESVQSFMNAHKEYK 812

Query: 81   QIEEEKKIALNIRIKPLNVE----------GWSIHKLQAKATELWETIVKLETDKYDLEE 130
            + E+  K      ++ +                +        E+  T   LE  + +  E
Sbjct: 813  KTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAE 872

Query: 131  RQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGK-YPVKEEERRQREVEEKKQRDLE 189
              + +   LK  K+      ++  + K L+  A T   Y    E        + K ++LE
Sbjct: 873  ALRIE---LKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLE 929

Query: 190  EKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEE 249
                  +  E +  + + ++  Q  +    N   +  E   T    Q    K+  +  + 
Sbjct: 930  AFDGECQSLEGQSNSDLLSILAQLTELNY-NGVPELTERKDTFFAQQWTGVKSSAETYKN 988

Query: 250  KKIALNIRIKPLN 262
              +A   R++ + 
Sbjct: 989  TLLAELERLQKIE 1001

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 43/387 (11%), Positives = 111/387 (28%), Gaps = 122/387 (31%)

Query: 5   KKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPN-----FTI 59
             ++EE  Q+ VEE  + + +     ++  +++   M     EQ ++    N     + +
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 60  QRREPGLTLSTAQLERNKTKEQIEEEKKIAL-----------------NIRIKPLNVEG- 101
            R +P L L  A LE       +   K + +                 + +++       
Sbjct: 132 SRLQPYLKLRQALLE-------LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 102 -W----SIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALK 156
            W    + +  +     L + + +++ +     +        +  ++   ++ L+ K  +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 157 KGL-------DPEAL------------TGKYPVKEEERRQREV------EEKKQRDLEEK 191
             L       + +A             T          R ++V             L+  
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTT----------RFKQVTDFLSAATTTHISLDHH 294

Query: 192 RQRLEEAEKK---------------RQA---------MMAA-LKEQTNKSKG-PNFTIQR 225
              L   E K               R+          ++A  +++         +    +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 226 REPGLTLSTAQLERNKTKEQIEEEKKIAL---NIRIKPLNVEGWSIHKLQAKATELW--- 279
               +  S   LE  + ++  +    +++   +  I P  +       L      +W   
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDR---LSVFPPSAHI-PTIL-------LSL----IWFDV 399

Query: 280 -----ETIVKLETDKYDLEERQKRQDY 301
                  +V        +E++ K    
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTI 426

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 14/121 (11%)

Query: 135 QDYDLKELKERQKQQLRHKALKKGL-DPEALTGKYPV------KEEERRQREVEEKKQRD 187
            ++D K++++  K  L  + +   +   +A++G   +      K+EE  Q+ VEE  + +
Sbjct: 31  DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90

Query: 188 LEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPN-----FTIQRREPGLTLSTA--QLERN 240
            +     ++  +++   M     EQ ++    N     + + R +P L L  A  +L   
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 241 K 241
           K
Sbjct: 151 K 151

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 24/209 (11%), Positives = 66/209 (31%), Gaps = 16/209 (7%)

Query: 3   QRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRR 62
           + KK E+  + +EV  + +      + +L   +++     A L      S         +
Sbjct: 802 EYKKTEKPPKGQEVS-ELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQ 860

Query: 63  EPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLE 122
           E    L      + K    +++  +I   +          +   +   + E  ++I  ++
Sbjct: 861 EHAEALRIELKRQKKIAVLLQKYNRILKKLENW------ATTKSVYLGSNETGDSITAVQ 914

Query: 123 TDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEEERRQREVEE 182
               +LE          + L+ +    L   ++   L      G   V E   R+     
Sbjct: 915 AKLKNLEAFDGE----CQSLEGQSNSDL--LSILAQLTELNYNG---VPELTERKDTFFA 965

Query: 183 KKQRDLEEKRQRLEEAEKKRQAMMAALKE 211
           ++   ++   +  +         +  +++
Sbjct: 966 QQWTGVKSSAETYKNTLLAELERLQKIED 994

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 29/194 (14%), Positives = 68/194 (35%), Gaps = 9/194 (4%)

Query: 77  KTKEQIEEEKKIALNIRIKPL---NVEGWSIHKLQAKATELWETIVKLETDKYDLEERQK 133
           K  ++ E+  K      ++ +         + K +        T  ++++    LE+ ++
Sbjct: 801 KEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQ 860

Query: 134 RQDYDLKELKERQKQ-----QLRHKALKKGLDPEALTGKYPVKEEERRQREVEEKKQRDL 188
                L+   +RQK+     Q  ++ LKK  +       Y    E        + K ++L
Sbjct: 861 EHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNL 920

Query: 189 EEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEE 248
           E      +  E +  + + ++  Q  +    N   +  E   T    Q    K+  +  +
Sbjct: 921 EAFDGECQSLEGQSNSDLLSILAQLTELNY-NGVPELTERKDTFFAQQWTGVKSSAETYK 979

Query: 249 EKKIALNIRIKPLN 262
              +A   R++ + 
Sbjct: 980 NTLLAELERLQKIE 993

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
1ytz_T	107	Troponin T; muscle, THIN filament, actin binding,	99.96
1j1d_B	106	Troponin T, TNT; THIN filament, muscle regulation,	99.95
1j1d_C	133	Troponin I, TNI; THIN filament, muscle regulation,	99.95
1j1e_C	180	Troponin I, TNI; THIN filament, muscle regulation,	99.94
1ytz_I	182	Troponin I; muscle, THIN filament, actin binding,	99.92
1ytz_T	107	Troponin T; muscle, THIN filament, actin binding,	99.9
1j1d_B	106	Troponin T, TNT; THIN filament, muscle regulation,	99.87
1j1d_C	133	Troponin I, TNI; THIN filament, muscle regulation,	99.84
1j1e_C	180	Troponin I, TNI; THIN filament, muscle regulation,	99.8
1ytz_I	182	Troponin I; muscle, THIN filament, actin binding,	99.77
1a2x_B	47	Troponin I; muscle contraction regulation, complex	88.93

>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1

Probab=99.96  E-value=2.3e-30  Score=211.83  Aligned_cols=93  Identities=37%  Similarity=0.601  Sum_probs=83.0

Q ss_pred             CCCCcccccCCCcchhhHHHHhhhhhHHHHH-HHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhccHHHH
Q psy9780          53 KGPNFTIQRREPGLTLSTAQLERNKTKEQIE-EEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEER  131 (302)
Q Consensus        53 ~g~nf~i~k~~~g~~L~kA~~~~~~~keq~~-eeKkk~LaeR~kpL~id~l~~~~LrekakELh~~I~~LE~EKyDle~k  131 (302)
                      ||.||       ||||++++.  ..+++|++ ++|++||++|||||||||||+++|+++|++||+||++||+++|||+.+
T Consensus         1 m~~~~-------g~~~~k~e~--~~~k~q~e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~k   71 (107)
T 1ytz_T            1 MGASY-------SSYLAKADQ--KRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQ   71 (107)
T ss_dssp             ---CC-------TTHHHHHHH--HHHHHHHHHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcch-------hhHHHHHHh--cccHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            56788       899987754  45688888 479999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhHHHHHHHHHHHHhhhh
Q psy9780         132 QKRQDYDLKELKERQKQQLRHKA  154 (302)
Q Consensus       132 ~~rq~yeI~eL~~Rv~dl~kfk~  154 (302)
                      |++|+|||++|++||+||.+|++
T Consensus        72 v~kq~yEI~eL~~rV~dlgKfkK   94 (107)
T 1ytz_T           72 IKRKKYEIVTLRNRIDQAQKHSK   94 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCC-
T ss_pred             HHhhhhHHHHHHHHHHHhcCccC
Confidence            99999999999999999966988

>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B

Probab=99.95  E-value=5.6e-30  Score=209.17  Aligned_cols=91  Identities=37%  Similarity=0.540  Sum_probs=68.2

Q ss_pred             CcchhhH-HHHhhhhhHHHHH-HHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHH
Q psy9780          64 PGLTLST-AQLERNKTKEQIE-EEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKE  141 (302)
Q Consensus        64 ~g~~L~k-A~~~~~~~keq~~-eeKkk~LaeR~kpL~id~l~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~e  141 (302)
                      +||||++ |+.++..+++|++ ++|++||++|||||||||||+++|+++|++||+||++||+++|||+.+|++|+|||++
T Consensus         2 ~~g~l~~~~~~e~~~~k~q~ereeKkkiLaER~kpL~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~e   81 (106)
T 1j1d_B            2 FGGYIQKQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINV   81 (106)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhHHHhcccHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHH
Confidence            4899988 3345566789987 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhh
Q psy9780         142 LKERQKQQLRHKA  154 (302)
Q Consensus       142 L~~Rv~dl~kfk~  154 (302)
                      |++||+||.+|++
T Consensus        82 L~~rV~dlgKf~K   94 (106)
T 1j1d_B           82 LRNRINDNQKVSK   94 (106)
T ss_dssp             HHHHHHTC-----
T ss_pred             HHHHHHHhcCccC
Confidence            9999999977988

>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2

Probab=99.95  E-value=3.2e-28  Score=205.74  Aligned_cols=90  Identities=26%  Similarity=0.386  Sum_probs=84.1

Q ss_pred             cchhhHHHHhhhhhHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHH
Q psy9780          65 GLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKE  144 (302)
Q Consensus        65 g~~L~kA~~~~~~~keq~~eeKkk~LaeR~kpL~id~l~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~  144 (302)
                      +++|++|..++.++.++.+++|++||++|||||||||||.++|+++|++||+||++||+++|||+.+|++|+|||++||+
T Consensus        21 ~lll~kA~e~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~  100 (133)
T 1j1d_C           21 TLLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQ  100 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh-hhh
Q psy9780         145 RQKQQLR-HKA  154 (302)
Q Consensus       145 Rv~dl~k-fk~  154 (302)
                      ||+|+++ |++
T Consensus       101 rV~Dl~gKfkK  111 (133)
T 1j1d_C          101 KIFDLRGKFKR  111 (133)
T ss_dssp             HHHHHC-----
T ss_pred             HHHHHHcccCC
Confidence            9999975 988

>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2

Probab=99.94  E-value=2.6e-27  Score=208.66  Aligned_cols=100  Identities=24%  Similarity=0.338  Sum_probs=87.7

Q ss_pred             cchhhHHHHhhhhhHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHH
Q psy9780          65 GLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKE  144 (302)
Q Consensus        65 g~~L~kA~~~~~~~keq~~eeKkk~LaeR~kpL~id~l~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~  144 (302)
                      +++|++|..++..+.++.+++|++||++|||||||||||.++|+++|++||+||++||+++|||+.+|.+|+|||++|++
T Consensus        21 ~lll~kA~e~L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~  100 (180)
T 1j1e_C           21 TLLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQ  100 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh-hhhhhcCCCch-hhcCCCCc
Q psy9780         145 RQKQQLR-HKALKKGLDPE-ALTGKYPV  170 (302)
Q Consensus       145 Rv~dl~k-fk~~~~g~dp~-~~~~~~p~  170 (302)
                      +|+||++ |++      |. ..++.|..
T Consensus       101 rV~DLrGKFkK------P~LkkV~~s~d  122 (180)
T 1j1e_C          101 KIFDLRGKFKR------PTLRRVRISAD  122 (180)
T ss_dssp             HHHHHC----------------CCCCHH
T ss_pred             HHHHHHhcccc------cchhhhcccHH
Confidence            9999975 999      76 66777643

>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A

Probab=99.92  E-value=2e-26  Score=203.17  Aligned_cols=99  Identities=23%  Similarity=0.288  Sum_probs=92.9

Q ss_pred             cchhhHHHHhhhhhHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHH
Q psy9780          65 GLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKE  144 (302)
Q Consensus        65 g~~L~kA~~~~~~~keq~~eeKkk~LaeR~kpL~id~l~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~  144 (302)
                      +++|++|..++..+.++.+++|++||++||||||||| |.++|+++|++||+||++||+++|||+.+|.+|+|||++|++
T Consensus        19 ~lll~kA~e~L~~E~e~k~eeKkkiLaER~kPLnid~-se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~   97 (182)
T 1ytz_I           19 SAMLQLAVTEIEKEAAAKEVEKQNYLAEHSPPLSLPG-SMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQ   97 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHH
Confidence            4789999999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh-hhhhhcCCCch-hhcCCCCc
Q psy9780         145 RQKQQLR-HKALKKGLDPE-ALTGKYPV  170 (302)
Q Consensus       145 Rv~dl~k-fk~~~~g~dp~-~~~~~~p~  170 (302)
                      +|+||++ |++      |. ..++.++.
T Consensus        98 rVnDLrGKfkK------P~LkkV~~sad  119 (182)
T 1ytz_I           98 KLFDLRGKFKR------PPLRRVRMSAD  119 (182)
T ss_dssp             TTGGGTCSCSS------CSSCCCCCCHH
T ss_pred             HHHHHHhhhcc------cchhhccccHh
Confidence            9999986 999      76 66877754

>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1

Probab=99.90  E-value=1.2e-24  Score=178.09  Aligned_cols=77  Identities=39%  Similarity=0.640  Sum_probs=67.9

Q ss_pred             CCCCcccccCCcccchhHHHHHhhhcHHHHH-HHHHhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHhhhhhhchHHHH
Q psy9780         217 KGPNFTIQRREPGLTLSTAQLERNKTKEQIE-EEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEER  295 (302)
Q Consensus       217 ~g~nf~~~kk~~~~~L~ka~~~~~~~k~q~~-eeKkk~LaeR~kpL~id~l~~d~LrekakELh~~i~~LE~EKyDle~k  295 (302)
                      ||+|||+       ||++++.  +.+++|++ ++|++||++|||||||||||+++|+++|++||+||++||+|||||+.+
T Consensus         1 m~~~~g~-------~~~k~e~--~~~k~q~e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~k   71 (107)
T 1ytz_T            1 MGASYSS-------YLAKADQ--KRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQ   71 (107)
T ss_dssp             ---CCTT-------HHHHHHH--HHHHHHHHHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchhh-------HHHHHHh--cccHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            6889995       7877654  45689988 479999999999999999999999999999999999999999999999


Q ss_pred             hhhccCC
Q psy9780         296 QKRQDYD  302 (302)
Q Consensus       296 ~~rq~Ye  302 (302)
                      |++|+||
T Consensus        72 v~kq~yE   78 (107)
T 1ytz_T           72 IKRKKYE   78 (107)
T ss_dssp             HHHHHHH
T ss_pred             HHhhhhH
Confidence            9999996

>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B

Probab=99.87  E-value=7.4e-24  Score=173.02  Aligned_cols=72  Identities=43%  Similarity=0.628  Sum_probs=56.7

Q ss_pred             chhH-HHHHhhhcHHHHH-HHHHhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHhhhhhhchHHHHhhhccCC
Q psy9780         231 TLST-AQLERNKTKEQIE-EEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD  302 (302)
Q Consensus       231 ~L~k-a~~~~~~~k~q~~-eeKkk~LaeR~kpL~id~l~~d~LrekakELh~~i~~LE~EKyDle~k~~rq~Ye  302 (302)
                      ||++ |+.+++.+++|++ ++|++||++|||||||||||+++|+++|++||+||++||+|||||+.+|++|+||
T Consensus         5 ~l~~~~~~e~~~~k~q~ereeKkkiLaER~kpL~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yE   78 (106)
T 1j1d_B            5 YIQKQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYE   78 (106)
T ss_dssp             ---------------CCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHhcccHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHH
Confidence            7887 3445667789988 8899999999999999999999999999999999999999999999999999996

>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2

Probab=99.84  E-value=1.9e-21  Score=164.38  Aligned_cols=73  Identities=29%  Similarity=0.449  Sum_probs=70.3

Q ss_pred             cchhHHHHHhhhcHHHHHHHHHhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHhhhhhhchHHHHhhhccCC
Q psy9780         230 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD  302 (302)
Q Consensus       230 ~~L~ka~~~~~~~k~q~~eeKkk~LaeR~kpL~id~l~~d~LrekakELh~~i~~LE~EKyDle~k~~rq~Ye  302 (302)
                      .+|++|..++..+.++.+++|++||++|||||||||||+++|+++|++||+||++||+|+|||+++|++|+||
T Consensus        22 lll~kA~e~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yE   94 (133)
T 1j1d_C           22 LLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITE   94 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchH
Confidence            3789999999998999999999999999999999999999999999999999999999999999999999996

>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2

Probab=99.80  E-value=1.9e-20  Score=164.99  Aligned_cols=73  Identities=29%  Similarity=0.449  Sum_probs=70.2

Q ss_pred             cchhHHHHHhhhcHHHHHHHHHhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHhhhhhhchHHHHhhhccCC
Q psy9780         230 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD  302 (302)
Q Consensus       230 ~~L~ka~~~~~~~k~q~~eeKkk~LaeR~kpL~id~l~~d~LrekakELh~~i~~LE~EKyDle~k~~rq~Ye  302 (302)
                      .+|++|..++..+.++.+++|++||++|||||||||||+++|+++|++||+||++||+++|||+++|.+|+||
T Consensus        22 lll~kA~e~L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyE   94 (180)
T 1j1e_C           22 LLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITE   94 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchh
Confidence            3789999999998888999999999999999999999999999999999999999999999999999999996

>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A

Probab=99.77  E-value=1.7e-19  Score=159.19  Aligned_cols=71  Identities=27%  Similarity=0.369  Sum_probs=68.4

Q ss_pred             chhHHHHHhhhcHHHHHHHHHhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHhhhhhhchHHHHhhhccCC
Q psy9780         231 TLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD  302 (302)
Q Consensus       231 ~L~ka~~~~~~~k~q~~eeKkk~LaeR~kpL~id~l~~d~LrekakELh~~i~~LE~EKyDle~k~~rq~Ye  302 (302)
                      +|++|..++..+.++.+++|++||++||||||||| |.++|+++|++||+||++||+++|||+++|.+|+||
T Consensus        21 ll~kA~e~L~~E~e~k~eeKkkiLaER~kPLnid~-se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yE   91 (182)
T 1ytz_I           21 MLQLAVTEIEKEAAAKEVEKQNYLAEHSPPLSLPG-SMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKE   91 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHH
Confidence            78999999998888888999999999999999999 999999999999999999999999999999999995

>1a2x_B Troponin I; muscle contraction regulation, complex (skeletal muscle/muscle protein); 2.30A {Oryctolagus cuniculus} SCOP: j.22.1.1

Probab=88.93  E-value=0.088  Score=36.87  Aligned_cols=29  Identities=28%  Similarity=0.226  Sum_probs=13.8

Q ss_pred             cchhhHHHHhhhhhHHHHHHHHHHHhhhc
Q psy9780          65 GLTLSTAQLERNKTKEQIEEEKKIALNIR   93 (302)
Q Consensus        65 g~~L~kA~~~~~~~keq~~eeKkk~LaeR   93 (302)
                      ++||++|..++..+..+.+++|.+||++|
T Consensus        19 slmL~~A~~~Le~E~~~k~~eK~~~L~Er   47 (47)
T 1a2x_B           19 SVMLQIAATELEKEEGRREAEKQNYLAEH   47 (47)
T ss_dssp             HHHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            58999999999999999999999999986

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00