Psyllid ID: psy9781

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEAVGDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLCV
ccccccccEEcccccccccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHcHHHHHHHHHHcHHHHHHHHcccccccccccccccccccccHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccccccccHHHHHHHccccccccccccccccEEEEccccHHHHHHHHHccc
ccEEEcccEEEccccccccEEEEEEcccEEEEccccccccccccEEEEcccccccHHHHHHHHHHHHHHcccccHHHcHHHHHccccccccccccccccHHHHHHHHHHHHHHcHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHcccccccccHHHccHHcccccccccHccccccEEEcHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccEEEEcccccccccccccHHHHccEEEEHHccHHHHHHHHHHcc
mclasevpliesgtagyEGQVELIKKGetkcyecdpkpaaktypgctirntpsepihCIVWAKHlfnlegsapgLLVLAQgqlfgeidadeevspdtedpeavgdAGAKAAAseatangdvVRTSTRAwasacgydprklFAKFFDADIRYLISMSDlwktrkapqplvwdtlsdavagssketdggglkdqrVWSVAECARVFERSVRELKTkfdvsrpgldksfygdrLTVARNsalnfnpdanivaHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLCV
mclasevpliesgtagyeGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEAVGDAGAKAAaseatangdvvrtSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAvagssketdggglkdqrvwSVAECARVFersvrelktkfdvsrpgldksfygDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLCV
MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEavgdagakaaaseatangDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLCV
************GTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQGQLFGEI*********************************VVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAV***********LKDQRVWSVAECARVFERSVRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC*
MCLASEVPLIESGTAGYEGQVELIKKGETK***************CTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEAVGDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDA***********GLKDQRVWSVAECARVFERSVRELK***********KSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLCV
MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQGQLFGEIDAD********************************RTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAG***********DQRVWSVAECARVFERSVRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLCV
MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQGQLFGE**********TEDPEAVGDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAV*******DGGGLKDQRVWSVAECARVFERSVRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLCV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEAVGDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLCV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query288 2.2.26 [Sep-21-2011]
Q28GH3 641 SUMO-activating enzyme su yes N/A 0.697 0.313 0.532 4e-63
Q642Q1 641 SUMO-activating enzyme su N/A N/A 0.697 0.313 0.536 5e-62
Q7ZY60 641 SUMO-activating enzyme su N/A N/A 0.697 0.313 0.536 5e-62
Q7SXG4 650 SUMO-activating enzyme su yes N/A 0.690 0.306 0.535 3e-61
Q9UBT2 640 SUMO-activating enzyme su yes N/A 0.697 0.314 0.531 5e-61
Q9Z1F9 638 SUMO-activating enzyme su yes N/A 0.697 0.315 0.536 2e-60
Q9NAN1 582 SUMO-activating enzyme su yes N/A 0.840 0.415 0.370 3e-43
Q54L40 661 SUMO-activating enzyme su yes N/A 0.656 0.285 0.356 9e-31
O42939 628 Ubiquitin-activating enzy yes N/A 0.687 0.315 0.348 1e-29
Q9SJT1 700 SUMO-activating enzyme su yes N/A 0.704 0.29 0.325 6e-26
>sp|Q28GH3|SAE2_XENTR SUMO-activating enzyme subunit 2 OS=Xenopus tropicalis GN=uba2 PE=2 SV=1 Back     alignment and function desciption
 Score =  241 bits (615), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 146/218 (66%), Gaps = 17/218 (7%)

Query: 1   MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIV 60
           MCLA+ +PLIESGTAGY GQV ++KKG T+CYEC PKP  KT+PGCTIRNTPSEPIHCIV
Sbjct: 128 MCLAAGIPLIESGTAGYLGQVTVVKKGVTECYECQPKPTQKTFPGCTIRNTPSEPIHCIV 187

Query: 61  WAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEAVGD-AGAKAAASEATANG 119
           WAK+LFN              QLFGE DAD+EV+PD  DPEA  D   A   A+ +  +G
Sbjct: 188 WAKYLFN--------------QLFGEEDADQEVAPDIADPEAAWDPTQAAERANASNVDG 233

Query: 120 DVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDA--V 177
           D+ R ST+ WA + GYDP KLF K F  DI+YL++M  LW+ RK P PL W +L +    
Sbjct: 234 DIKRVSTKQWAKSTGYDPIKLFNKLFRDDIKYLLTMDRLWRKRKPPVPLEWSSLHNKENC 293

Query: 178 AGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKF 215
           + +  E+   GLKDQ+V  V  CA++F +SV  L+ + 
Sbjct: 294 SETQNESSLQGLKDQKVLDVTSCAQLFSKSVETLREQL 331
The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.
Xenopus tropicalis (taxid: 8364)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q642Q1|SAE2A_XENLA SUMO-activating enzyme subunit 2-A OS=Xenopus laevis GN=uba2-a PE=2 SV=1 Back     alignment and function description
>sp|Q7ZY60|SAE2B_XENLA SUMO-activating enzyme subunit 2-B OS=Xenopus laevis GN=uba2-b PE=2 SV=2 Back     alignment and function description
>sp|Q7SXG4|SAE2_DANRE SUMO-activating enzyme subunit 2 OS=Danio rerio GN=uba2 PE=1 SV=2 Back     alignment and function description
>sp|Q9UBT2|SAE2_HUMAN SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2 Back     alignment and function description
>sp|Q9Z1F9|SAE2_MOUSE SUMO-activating enzyme subunit 2 OS=Mus musculus GN=Uba2 PE=2 SV=1 Back     alignment and function description
>sp|Q9NAN1|SAE2_CAEEL SUMO-activating enzyme subunit uba-2 OS=Caenorhabditis elegans GN=uba-2 PE=3 SV=3 Back     alignment and function description
>sp|Q54L40|SAE2_DICDI SUMO-activating enzyme subunit 2 OS=Dictyostelium discoideum GN=uba2 PE=3 SV=1 Back     alignment and function description
>sp|O42939|UBA2_SCHPO Ubiquitin-activating enzyme E1-like OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uba2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SJT1|SAE2_ARATH SUMO-activating enzyme subunit 2 OS=Arabidopsis thaliana GN=SAE2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
242012229 618 ubiquitin-activating enzyme E1b, putativ 0.791 0.368 0.579 1e-75
380029281 666 PREDICTED: LOW QUALITY PROTEIN: SUMO-act 0.711 0.307 0.584 3e-73
328784604 666 PREDICTED: SUMO-activating enzyme subuni 0.711 0.307 0.589 5e-73
332025283 654 SUMO-activating enzyme subunit 2 [Acromy 0.711 0.313 0.593 1e-72
307212495 654 SUMO-activating enzyme subunit 2 [Harpeg 0.711 0.313 0.595 7e-72
307183180 654 SUMO-activating enzyme subunit 2 [Campon 0.809 0.356 0.551 7e-72
322785591 653 hypothetical protein SINV_04534 [Solenop 0.704 0.310 0.593 2e-71
345479249 675 PREDICTED: SUMO-activating enzyme subuni 0.711 0.303 0.595 3e-71
350410516 666 PREDICTED: SUMO-activating enzyme subuni 0.697 0.301 0.595 3e-71
340719505 666 PREDICTED: SUMO-activating enzyme subuni 0.697 0.301 0.590 3e-70
>gi|242012229|ref|XP_002426836.1| ubiquitin-activating enzyme E1b, putative [Pediculus humanus corporis] gi|212511049|gb|EEB14098.1| ubiquitin-activating enzyme E1b, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 149/257 (57%), Positives = 179/257 (69%), Gaps = 29/257 (11%)

Query: 1   MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIV 60
           MCLA++VPLIESGTAGY+GQVELIKKG T+CYEC+PK A KTYPGCTIRNTPSEPIHCIV
Sbjct: 130 MCLAADVPLIESGTAGYDGQVELIKKGMTRCYECEPKAAQKTYPGCTIRNTPSEPIHCIV 189

Query: 61  WAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEAVGDAGAKAAASEAT---- 116
           W+KHLFN              QLFGE DAD++VSPDTEDPEA  DAG  A  S+A     
Sbjct: 190 WSKHLFN--------------QLFGEADADQDVSPDTEDPEAAADAGENALKSKANTIKE 235

Query: 117 ANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDA 176
           +NG+V R STR WA  C YDP+KLF KFF  DI+YL+SM  LW  R+ P PL W+ L DA
Sbjct: 236 SNGNVERKSTRHWAQECDYDPKKLFGKFFRDDIKYLLSMDKLWTKRRPPTPLNWEELPDA 295

Query: 177 VAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDVSRPGLDKSFYGDRLTVARN 236
           VAG+S+  D  GLKD ++WS+AECA++F  SV +LK +       L K   GD L   ++
Sbjct: 296 VAGTSQSED-PGLKDLKIWSIAECAKIFAVSVEKLKIE-------LKKLAEGDHLIWDKD 347

Query: 237 S--ALNFNPD-ANIVAH 250
           +  A++F    ANI AH
Sbjct: 348 NKEAMDFVAACANIRAH 364

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380029281|ref|XP_003698305.1| PREDICTED: LOW QUALITY PROTEIN: SUMO-activating enzyme subunit 2-like [Apis florea] Back     alignment and taxonomy information
>gi|328784604|ref|XP_392715.4| PREDICTED: SUMO-activating enzyme subunit 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|332025283|gb|EGI65454.1| SUMO-activating enzyme subunit 2 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307212495|gb|EFN88226.1| SUMO-activating enzyme subunit 2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307183180|gb|EFN70089.1| SUMO-activating enzyme subunit 2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322785591|gb|EFZ12246.1| hypothetical protein SINV_04534 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|345479249|ref|XP_001604879.2| PREDICTED: SUMO-activating enzyme subunit 2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|350410516|ref|XP_003489064.1| PREDICTED: SUMO-activating enzyme subunit 2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340719505|ref|XP_003398193.1| PREDICTED: SUMO-activating enzyme subunit 2-like [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
ZFIN|ZDB-GENE-040426-2681 651 uba2 "ubiquitin-like modifier 0.722 0.319 0.504 7.8e-55
UNIPROTKB|Q28GH3 641 uba2 "SUMO-activating enzyme s 0.687 0.308 0.516 8.9e-54
UNIPROTKB|Q642Q1 641 uba2-a "SUMO-activating enzyme 0.687 0.308 0.520 8e-53
UNIPROTKB|Q7ZY60 641 uba2-b "SUMO-activating enzyme 0.687 0.308 0.520 8e-53
MGI|MGI:1858313 638 Uba2 "ubiquitin-like modifier 0.687 0.310 0.520 1.3e-52
FB|FBgn0029113 700 Uba2 "Smt3 activating enzyme 2 0.690 0.284 0.482 2.3e-52
UNIPROTKB|Q9UBT2 640 UBA2 "SUMO-activating enzyme s 0.687 0.309 0.516 2.7e-52
UNIPROTKB|B3KWB9 544 UBA2 "cDNA FLJ42740 fis, clone 0.687 0.363 0.516 2.7e-52
UNIPROTKB|F1LS72 642 Uba2 "Protein Uba2" [Rattus no 0.694 0.311 0.509 5.6e-52
UNIPROTKB|A4FV12 640 UBA2 "UBA2 protein" [Bos tauru 0.687 0.309 0.511 9.2e-52
ZFIN|ZDB-GENE-040426-2681 uba2 "ubiquitin-like modifier activating enzyme 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 118/234 (50%), Positives = 146/234 (62%)

Query:     1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIV 60
             MCLA+++PLIESGTAGY GQV +IKKG+T+CYEC PKP  KT+PGCTIRNTPSEPIHCIV
Sbjct:   129 MCLAADIPLIESGTAGYLGQVTVIKKGQTECYECQPKPTQKTFPGCTIRNTPSEPIHCIV 188

Query:    61 WAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEXXXX-XXXXXXXXXXXXXX 119
             WAK+LFN              QLFGE DAD+EVSPDT DPE                   
Sbjct:   189 WAKYLFN--------------QLFGEEDADQEVSPDTADPEAAWNPADAAARATASDQDG 234

Query:   120 DVVRTSTRAWASACGYDPRKLFAK----------FFDADIRYLISMSDLWKTRKAPQPLV 169
             D+ R ST+ WA + GYDP KLF K           F  DI YL++M  LWK RKAP PL 
Sbjct:   235 DIKRVSTKEWARSTGYDPIKLFNKVSALSQTSPYLFKDDIMYLLTMDKLWKKRKAPLPLE 294

Query:   170 WDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDVSRPGLD 223
             W+ ++  +AGS ++  G GLKDQ+V  V   A++F+ SV  L+++      G +
Sbjct:   295 WEEINQ-LAGSQEQVIGSGLKDQQVLGVQGYAQLFQHSVETLRSQLKEKGDGAE 347
GO:0005524 "ATP binding" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
GO:0006464 "cellular protein modification process" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0008641 "small protein activating enzyme activity" evidence=IEA
GO:0019948 "SUMO activating enzyme activity" evidence=ISS
GO:0016925 "protein sumoylation" evidence=ISS
GO:0005634 "nucleus" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0016874 "ligase activity" evidence=IEA
UNIPROTKB|Q28GH3 uba2 "SUMO-activating enzyme subunit 2" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q642Q1 uba2-a "SUMO-activating enzyme subunit 2-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZY60 uba2-b "SUMO-activating enzyme subunit 2-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
MGI|MGI:1858313 Uba2 "ubiquitin-like modifier activating enzyme 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0029113 Uba2 "Smt3 activating enzyme 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UBT2 UBA2 "SUMO-activating enzyme subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B3KWB9 UBA2 "cDNA FLJ42740 fis, clone BRAWH2016655, highly similar to Ubiquitin-like 1-activating enzyme E1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1LS72 Uba2 "Protein Uba2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A4FV12 UBA2 "UBA2 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9UBT2SAE2_HUMAN6, ., 3, ., 2, ., -0.53180.69790.3140yesN/A
Q7SXG4SAE2_DANRE6, ., 3, ., 2, ., -0.53530.69090.3061yesN/A
Q9Z1F9SAE2_MOUSE6, ., 3, ., 2, ., -0.53660.69790.3150yesN/A
Q28GH3SAE2_XENTR6, ., 3, ., 2, ., -0.53210.69790.3135yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
cd01489312 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E 2e-42
cd01484234 cd01484, E1-2_like, Ubiquitin activating enzyme (E 1e-22
pfam1058544 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating e 2e-20
cd01489 312 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E 6e-17
cd01488291 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1 8e-13
cd01490435 cd01490, Ube1_repeat2, Ubiquitin activating enzyme 2e-10
TIGR01408 1008 TIGR01408, Ube1, ubiquitin-activating enzyme E1 3e-09
cd01489312 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E 4e-09
cd01484 234 cd01484, E1-2_like, Ubiquitin activating enzyme (E 4e-04
cd00757228 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA 8e-04
>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2 Back     alignment and domain information 
 Score =  147 bits (373), Expect = 2e-42
 Identities = 49/68 (72%), Positives = 59/68 (86%)

Query: 1   MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIV 60
           MCLA++VPLIESGT G+ GQV++IKKG+T+CYEC PK   KT+P CTIR+TPS+PIHCIV
Sbjct: 110 MCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIRSTPSQPIHCIV 169

Query: 61  WAKHLFNL 68
           WAK LF L
Sbjct: 170 WAKSLFFL 177

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 312
>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like Back     alignment and domain information
>gnl|CDD|192635 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzyme active site Back     alignment and domain information
>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2 Back     alignment and domain information
>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3 Back     alignment and domain information
>gnl|CDD|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2 Back     alignment and domain information
>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1 Back     alignment and domain information
>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2 Back     alignment and domain information
>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like Back     alignment and domain information
>gnl|CDD|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 288
KOG2013|consensus 603 100.0
TIGR01408 1008 Ube1 ubiquitin-activating enzyme E1. This model re 100.0
KOG2012|consensus 1013 100.0
cd01490435 Ube1_repeat2 Ubiquitin activating enzyme (E1), rep 100.0
cd01489312 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit 100.0
cd01484234 E1-2_like Ubiquitin activating enzyme (E1), repeat 99.94
cd01488291 Uba3_RUB Ubiquitin activating enzyme (E1) subunit 99.85
KOG2015|consensus422 99.83
PF1058545 UBA_e1_thiolCys: Ubiquitin-activating enzyme activ 99.79
KOG2013|consensus 603 99.5
KOG2012|consensus 1013 98.69
KOG2015|consensus 422 98.61
cd01484 234 E1-2_like Ubiquitin activating enzyme (E1), repeat 98.46
PF0213467 UBACT: Repeat in ubiquitin-activating (UBA) protei 98.28
cd01488 291 Uba3_RUB Ubiquitin activating enzyme (E1) subunit 98.22
cd01490 435 Ube1_repeat2 Ubiquitin activating enzyme (E1), rep 98.21
cd01489 312 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit 98.2
TIGR01408 1008 Ube1 ubiquitin-activating enzyme E1. This model re 97.97
TIGR02356202 adenyl_thiF thiazole biosynthesis adenylyltransfer 97.91
PRK07411390 hypothetical protein; Validated 97.74
TIGR03736244 PRTRC_ThiF PRTRC system ThiF family protein. A nov 97.72
PRK05597355 molybdopterin biosynthesis protein MoeB; Validated 97.67
PRK08328231 hypothetical protein; Provisional 97.54
PRK08223287 hypothetical protein; Validated 97.49
PRK08762376 molybdopterin biosynthesis protein MoeB; Validated 97.43
COG0476254 ThiF Dinucleotide-utilizing enzymes involved in mo 97.4
TIGR03603318 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy 97.37
PRK12475338 thiamine/molybdopterin biosynthesis MoeB-like prot 97.26
PRK07878392 molybdopterin biosynthesis-like protein MoeZ; Vali 97.22
PRK05690245 molybdopterin biosynthesis protein MoeB; Provision 97.21
cd00757228 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 97.16
PRK07688339 thiamine/molybdopterin biosynthesis ThiF/MoeB-like 97.07
PRK05600370 thiamine biosynthesis protein ThiF; Validated 96.99
KOG2017|consensus427 96.93
TIGR03736 244 PRTRC_ThiF PRTRC system ThiF family protein. A nov 96.76
cd01486 307 Apg7 Apg7 is an E1-like protein, that activates tw 96.72
TIGR02355240 moeB molybdopterin synthase sulfurylase MoeB. This 96.71
TIGR01381 664 E1_like_apg7 E1-like protein-activating enzyme Gsa 96.57
PRK08223 287 hypothetical protein; Validated 96.45
COG0476 254 ThiF Dinucleotide-utilizing enzymes involved in mo 96.4
cd01491286 Ube1_repeat1 Ubiquitin activating enzyme (E1), rep 96.39
TIGR02356202 adenyl_thiF thiazole biosynthesis adenylyltransfer 96.28
cd01492197 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit 96.28
PRK07411 390 hypothetical protein; Validated 96.2
PRK14851 679 hypothetical protein; Provisional 96.17
PRK07878 392 molybdopterin biosynthesis-like protein MoeZ; Vali 96.11
cd00755 231 YgdL_like Family of activating enzymes (E1) of ubi 96.07
PRK05690 245 molybdopterin biosynthesis protein MoeB; Provision 96.03
PRK05597 355 molybdopterin biosynthesis protein MoeB; Validated 95.96
PRK05600 370 thiamine biosynthesis protein ThiF; Validated 95.92
cd00757228 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 95.77
TIGR02355 240 moeB molybdopterin synthase sulfurylase MoeB. This 95.62
COG1179 263 Dinucleotide-utilizing enzymes involved in molybdo 95.47
PRK08328231 hypothetical protein; Provisional 95.42
PRK14852 989 hypothetical protein; Provisional 95.29
cd01485198 E1-1_like Ubiquitin activating enzyme (E1), repeat 95.24
PRK08762 376 molybdopterin biosynthesis protein MoeB; Validated 94.94
PRK15116 268 sulfur acceptor protein CsdL; Provisional 94.79
cd01491 286 Ube1_repeat1 Ubiquitin activating enzyme (E1), rep 94.54
PRK14852 989 hypothetical protein; Provisional 94.35
cd01483143 E1_enzyme_family Superfamily of activating enzymes 94.34
PRK07877 722 hypothetical protein; Provisional 94.3
PF00899135 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a 94.2
PRK14851 679 hypothetical protein; Provisional 93.99
cd01487174 E1_ThiF_like E1_ThiF_like. Member of superfamily o 93.86
PRK08644212 thiamine biosynthesis protein ThiF; Provisional 93.6
TIGR01381664 E1_like_apg7 E1-like protein-activating enzyme Gsa 92.17
PRK07688 339 thiamine/molybdopterin biosynthesis ThiF/MoeB-like 91.59
PRK12475 338 thiamine/molybdopterin biosynthesis MoeB-like prot 91.03
TIGR02354200 thiF_fam2 thiamine biosynthesis protein ThiF, fami 88.81
cd01487174 E1_ThiF_like E1_ThiF_like. Member of superfamily o 88.47
PRK07877 722 hypothetical protein; Provisional 84.82
PRK06153 393 hypothetical protein; Provisional 84.21
KOG2336|consensus422 83.86
cd01485198 E1-1_like Ubiquitin activating enzyme (E1), repeat 81.32
cd01493425 APPBP1_RUB Ubiquitin activating enzyme (E1) subuni 80.72
>KOG2013|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.5e-54  Score=413.57  Aligned_cols=262  Identities=42%  Similarity=0.655  Sum_probs=209.5

Q ss_pred             CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCCCCCCCCCCCCCCCCCCCchhHHHHHH-HHhhhcCCCCchHHhh
Q psy9781           1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAK-HLFNLEGSAPGLLVLA   79 (288)
Q Consensus         1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~~~~~~~P~CTir~~P~~p~HcI~WAk-~lF~~~~~~~~~~~~~   79 (288)
                      ||+.+++|||||||.||.|||++|++|.||||+|.++|.+++||+|||||+|++|+|||+||| .+|+            
T Consensus       123 ~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK~~~kTypvCTIRstPS~~iHCIVWAK~~lF~------------  190 (603)
T KOG2013|consen  123 MCLAASVPLIESGTGGFLGQVQVIIKGKTECYECIPKPVPKTYPVCTIRSTPSEPIHCIVWAKHYLFN------------  190 (603)
T ss_pred             HHHhhcCCceecCcccccceEEEEecCCcceecccCCCCCCcCCceEeecCCCCceeeeeehHhHHHH------------
Confidence            799999999999999999999999999999999999999999999999999999999999999 6899            


Q ss_pred             hcccCCCCCCCCcCCCCCCCchhhcChhH-HH-HhHHhhhcCcceeccccchhccccchHHHHHHHhhHHHHHHHHhCCc
Q psy9781          80 QGQLFGEIDADEEVSPDTEDPEAVGDAGA-KA-AASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSD  157 (288)
Q Consensus        80 ~~~lF~~~~~~~~~~~~~~dp~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~c~~~a~~~f~~~F~~~I~~Ll~~~~  157 (288)
                        +|||+.+.++....+-.||+..++..+ .+ ...+.. ....++.+...|...-.+-..++|.++|-.||+|||.|+.
T Consensus       191 --qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~-d~~Er~~~i~~~~~~~~~~~~~i~~klF~~dI~yl~~~e~  267 (603)
T KOG2013|consen  191 --QLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETE-DLKERRESIVEIDKNLDFGPFKIFNKLFIYDIEYLLGMEA  267 (603)
T ss_pred             --HHhccccccccccccccCchhhhccChhhhhhhccch-HHHHHHHHHHHHhhccCCChhhhhhHHHHHHHHHHHhhhh
Confidence              999998776666666667765543321 11 111111 1112233333444444566789999999999999999999


Q ss_pred             cccCCCCCCccccccchhhh-h--CCCCcC-CCCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCceee
Q psy9781         158 LWKTRKAPQPLVWDTLSDAV-A--GSSKET-DGGGLKDQRVWSVAECARVFERSVRELKTKFDVSRPGLDKSFYGDRLTV  233 (288)
Q Consensus       158 ~W~~rr~P~Pl~~~~~~~~~-~--~~~~~~-~~~~~~~q~~ws~~e~~~vf~~s~s~L~rqf~~~~~~~~k~~~~~~l~f  233 (288)
                      +|+.|++|.||+|....... .  ++..++ -+..+.+|.+|++++++.+|..++..|.-+......       .-.+.|
T Consensus       268 ~wk~r~~p~pl~~~~~i~~~~~t~ns~~q~~~~a~~~~~~v~~v~~~~~vf~~~i~~l~~~~~~~~~-------h~~l~f  340 (603)
T KOG2013|consen  268 LWKPRSRPVPLSIAEVISTSLETINSIVQSITSAQLNDQNVWTVDEGAVVFRLSIQALDLRCPKESD-------HWYLIF  340 (603)
T ss_pred             hccCCCCCCCcchhhccCCccccccchhhhccccccCCcceeeeccccHHHHHHHHHhcccCCccCC-------CceEEE
Confidence            99999999999998763221 1  111121 134577999999999999999999999555443333       236899


Q ss_pred             e--hhhhhcccc-cceEeEEcCCCCCC-CCChhhhcccCeEEEchhchhhhhhheee
Q psy9781         234 A--RNSALNFNP-DANIVAHHTSIISA-DFGVNYFKQFTLVMNALDNRVSKFSALLL  286 (288)
Q Consensus       234 d--d~~~~dFV~-aaNLRA~~f~I~~~-~~~~~~~~~f~~V~nALdn~~Ar~~~l~~  286 (288)
                      |  |..+|+||+ +||||||+|||+++ .|+++.++|  .|+||++++.|.+.||++
T Consensus       341 dKdd~~~~~FVaaaaNiRa~if~ipmkS~Fdik~mAg--nIipaIAtTNAiIagliv  395 (603)
T KOG2013|consen  341 DKDDASTMEFVAAAANIRAHIFGIPMKSLFDIKQMAG--NIIPAIATTNAIIAGLIV  395 (603)
T ss_pred             cCCcHHHHHHHHHHhhhhhhhhccchhhhhchHhHhc--ccchhhhhhhhHHHHHHH
Confidence            8  788999999 99999999999987 899999999  999999999999999853

>TIGR01408 Ube1 ubiquitin-activating enzyme E1 Back     alignment and domain information
>KOG2012|consensus Back     alignment and domain information
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 Back     alignment and domain information
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 Back     alignment and domain information
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like Back     alignment and domain information
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 Back     alignment and domain information
>KOG2015|consensus Back     alignment and domain information
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP Back     alignment and domain information
>KOG2013|consensus Back     alignment and domain information
>KOG2012|consensus Back     alignment and domain information
>KOG2015|consensus Back     alignment and domain information
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like Back     alignment and domain information
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ] Back     alignment and domain information
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 Back     alignment and domain information
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 Back     alignment and domain information
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 Back     alignment and domain information
>TIGR01408 Ube1 ubiquitin-activating enzyme E1 Back     alignment and domain information
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E Back     alignment and domain information
>PRK07411 hypothetical protein; Validated Back     alignment and domain information
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein Back     alignment and domain information
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>PRK08328 hypothetical protein; Provisional Back     alignment and domain information
>PRK08223 hypothetical protein; Validated Back     alignment and domain information
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism] Back     alignment and domain information
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family Back     alignment and domain information
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional Back     alignment and domain information
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated Back     alignment and domain information
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional Back     alignment and domain information
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA Back     alignment and domain information
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated Back     alignment and domain information
>PRK05600 thiamine biosynthesis protein ThiF; Validated Back     alignment and domain information
>KOG2017|consensus Back     alignment and domain information
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein Back     alignment and domain information
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively Back     alignment and domain information
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB Back     alignment and domain information
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p Back     alignment and domain information
>PRK08223 hypothetical protein; Validated Back     alignment and domain information
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism] Back     alignment and domain information
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 Back     alignment and domain information
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E Back     alignment and domain information
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 Back     alignment and domain information
>PRK07411 hypothetical protein; Validated Back     alignment and domain information
>PRK14851 hypothetical protein; Provisional Back     alignment and domain information
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated Back     alignment and domain information
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E Back     alignment and domain information
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional Back     alignment and domain information
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>PRK05600 thiamine biosynthesis protein ThiF; Validated Back     alignment and domain information
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA Back     alignment and domain information
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB Back     alignment and domain information
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] Back     alignment and domain information
>PRK08328 hypothetical protein; Provisional Back     alignment and domain information
>PRK14852 hypothetical protein; Provisional Back     alignment and domain information
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like Back     alignment and domain information
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>PRK15116 sulfur acceptor protein CsdL; Provisional Back     alignment and domain information
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 Back     alignment and domain information
>PRK14852 hypothetical protein; Provisional Back     alignment and domain information
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins Back     alignment and domain information
>PRK07877 hypothetical protein; Provisional Back     alignment and domain information
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP Back     alignment and domain information
>PRK14851 hypothetical protein; Provisional Back     alignment and domain information
>cd01487 E1_ThiF_like E1_ThiF_like Back     alignment and domain information
>PRK08644 thiamine biosynthesis protein ThiF; Provisional Back     alignment and domain information
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p Back     alignment and domain information
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated Back     alignment and domain information
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional Back     alignment and domain information
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 Back     alignment and domain information
>cd01487 E1_ThiF_like E1_ThiF_like Back     alignment and domain information
>PRK07877 hypothetical protein; Provisional Back     alignment and domain information
>PRK06153 hypothetical protein; Provisional Back     alignment and domain information
>KOG2336|consensus Back     alignment and domain information
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like Back     alignment and domain information
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
3kyc_B 660 Human Sumo E1 Complex With A Sumo1-Amp Mimic Length 8e-58
3kyc_B 660 Human Sumo E1 Complex With A Sumo1-Amp Mimic Length 9e-12
3kyd_B 551 Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mi 1e-57
3kyd_B 551 Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mi 1e-11
1y8q_B 640 Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex 4e-57
1y8q_B 640 Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex 9e-12
2px9_A217 The Intrinsic Affinity Between E2 And The Cys Domai 3e-38
4ii2_A 1001 Crystal Structure Of Ubiquitin Activating Enzyme 1 1e-08
3cmm_A 1015 Crystal Structure Of The Uba1-Ubiquitin Complex Len 2e-08
1tt5_B434 Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I 8e-08
1yov_B444 Insights Into The Ubiquitin Transfer Cascade From T 9e-08
3gzn_B463 Structure Of Nedd8-Activating Enzyme In Complex Wit 9e-08
2nvu_B805 Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1 1e-07
3dbr_B434 Structural Dissection Of A Gating Mechanism Prevent 5e-07
3dbl_B434 Structural Dissection Of A Gating Mechanism Prevent 1e-06
1r4m_B431 Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com 1e-06
3dbh_B434 Structural Dissection Of A Gating Mechanism Prevent 1e-06
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic Length = 660 Back     alignment and structure 
Iteration: 1

 Score =  220 bits (560), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 112/220 (50%), Positives = 133/220 (60%), Gaps = 19/220 (8%)
Query: 1   MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIV 60
           MCLA++VPLIESGTAGY GQV  IKKG T+CYEC PKP  +T+PGCTIRNTPSEPIHCIV
Sbjct: 148 MCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIV 207
Query: 61  WAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEXX-XXXXXXXXXXXXXXXX 119
           WAK+LFN              QLFGE DAD+EVSPD  DPE                   
Sbjct: 208 WAKYLFN--------------QLFGEEDADQEVSPDRADPEAAWEPTEAEARARACNEDG 253
Query: 120 DVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLS----D 175
           D+ R ST+ WA + GYDP KLF K F  DIRYL++M  LW+ RK P PL W  +     +
Sbjct: 254 DIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEE 313
Query: 176 AVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKF 215
             A   +     GLKDQ+V  V   AR+F +S+  L+   
Sbjct: 314 TNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHL 353
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic Length = 660 Back     alignment and structure
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic Length = 551 Back     alignment and structure
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic Length = 551 Back     alignment and structure
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 640 Back     alignment and structure
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 640 Back     alignment and structure
>pdb|2PX9|A Chain A, The Intrinsic Affinity Between E2 And The Cys Domain Of E1 In Ubiquitin-Like Modifications Length = 217 Back     alignment and structure
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 1001 Back     alignment and structure
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015 Back     alignment and structure
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 434 Back     alignment and structure
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 444 Back     alignment and structure
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 463 Back     alignment and structure
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 805 Back     alignment and structure
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190gln-Nedd8ala72arg) Length = 434 Back     alignment and structure
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 434 Back     alignment and structure
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 431 Back     alignment and structure
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 434 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
1y8q_B 640 Anthracycline-, ubiquitin-like 2 activating enzyme 1e-65
1y8q_B 640 Anthracycline-, ubiquitin-like 2 activating enzyme 4e-10
3cmm_A 1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 7e-31
3cmm_A 1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 4e-07
3cmm_A 1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 4e-05
2nvu_B805 Maltose binding protein/NEDD8-activating enzyme E1 1e-28
2nvu_B 805 Maltose binding protein/NEDD8-activating enzyme E1 2e-10
1tt5_B434 Ubiquitin-activating enzyme E1C isoform 1; cell cy 1e-24
1tt5_B 434 Ubiquitin-activating enzyme E1C isoform 1; cell cy 2e-09
1z7l_A276 Ubiquitin-activating enzyme E1 1; SCCH, second cat 1e-20
1tt5_A 531 APPBP1, amyloid protein-binding protein 1; cell cy 7e-08
1tt5_A 531 APPBP1, amyloid protein-binding protein 1; cell cy 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640 Back     alignment and structure
 Score =  215 bits (548), Expect = 1e-65
 Identities = 118/234 (50%), Positives = 144/234 (61%), Gaps = 19/234 (8%)

Query: 1   MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIV 60
           MCLA++VPLIESGTAGY GQV  IKKG T+CYEC PKP  +T+PG TIRNTPSEPIHCIV
Sbjct: 128 MCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGATIRNTPSEPIHCIV 187

Query: 61  WAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEAVGDAG-AKAAASEATANG 119
           WAK+LFN              QLFGE DAD+EVSPD  DPEA  +   A+A A  +  +G
Sbjct: 188 WAKYLFN--------------QLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDG 233

Query: 120 DVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSD---- 175
           D+ R ST+ WA + GYDP KLF K F  DIRYL++M  LW+ RK P PL W  +      
Sbjct: 234 DIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEE 293

Query: 176 AVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDVSRPGLDKSFYGD 229
             A   +     GLKDQ+V  V   AR+F +S+  L+        G +  +  D
Sbjct: 294 TNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHLAEKGDGAELIWDKD 347
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640 Back     alignment and structure
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015 Back     alignment and structure
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015 Back     alignment and structure
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015 Back     alignment and structure
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805 Back     alignment and structure
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805 Back     alignment and structure
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434 Back     alignment and structure
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434 Back     alignment and structure
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus} Length = 276 Back     alignment and structure
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531 Back     alignment and structure
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
1y8q_B 640 Anthracycline-, ubiquitin-like 2 activating enzyme 100.0
3cmm_A 1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 100.0
1z7l_A276 Ubiquitin-activating enzyme E1 1; SCCH, second cat 100.0
1tt5_B434 Ubiquitin-activating enzyme E1C isoform 1; cell cy 99.44
2nvu_B805 Maltose binding protein/NEDD8-activating enzyme E1 99.25
3h8v_A292 Ubiquitin-like modifier-activating enzyme 5; rossm 97.77
1tt5_A 531 APPBP1, amyloid protein-binding protein 1; cell cy 97.77
1y8q_B 640 Anthracycline-, ubiquitin-like 2 activating enzyme 97.69
3cmm_A 1015 Ubiquitin-activating enzyme E1 1; UBA1, protein tu 97.63
1z7l_A276 Ubiquitin-activating enzyme E1 1; SCCH, second cat 97.3
1tt5_B 434 Ubiquitin-activating enzyme E1C isoform 1; cell cy 97.1
2nvu_B 805 Maltose binding protein/NEDD8-activating enzyme E1 96.95
3rui_A340 Ubiquitin-like modifier-activating enzyme ATG7; au 96.84
1zud_1251 Adenylyltransferase THIF; thiamin, thiazole, prote 96.59
3h5n_A353 MCCB protein; ubiquitin-activating enzyme, microci 96.56
3h8v_A 292 Ubiquitin-like modifier-activating enzyme 5; rossm 96.55
3rui_A 340 Ubiquitin-like modifier-activating enzyme ATG7; au 96.53
1tt5_A 531 APPBP1, amyloid protein-binding protein 1; cell cy 96.43
1jw9_B249 Molybdopterin biosynthesis MOEB protein; MOEB: mod 96.38
1y8q_A 346 Ubiquitin-like 1 activating enzyme E1A; SUMO, hete 96.29
4gsl_A615 Ubiquitin-like modifier-activating enzyme ATG7; ub 96.14
4gsl_A 615 Ubiquitin-like modifier-activating enzyme ATG7; ub 96.05
3vh1_A 598 Ubiquitin-like modifier-activating enzyme ATG7; au 96.0
1jw9_B 249 Molybdopterin biosynthesis MOEB protein; MOEB: mod 94.98
1zud_1 251 Adenylyltransferase THIF; thiamin, thiazole, prote 94.93
3h5n_A 353 MCCB protein; ubiquitin-activating enzyme, microci 94.68
1y8q_A346 Ubiquitin-like 1 activating enzyme E1A; SUMO, hete 94.05
3vh1_A598 Ubiquitin-like modifier-activating enzyme ATG7; au 93.01
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Back     alignment and structure
Probab=100.00  E-value=2.2e-51  Score=415.86  Aligned_cols=262  Identities=47%  Similarity=0.795  Sum_probs=206.4

Q ss_pred             CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCCCCCCCCCCCCCCCCCCCchhHHHHHHHHhhhcCCCCchHHhhh
Q psy9781           1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQ   80 (288)
Q Consensus         1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~~~~~~~P~CTir~~P~~p~HcI~WAk~lF~~~~~~~~~~~~~~   80 (288)
                      +|+.+++|||++|+.|+.||+++++|+.|+||+|.+.|+++++|+||++++|+.|+|||+||+++|+             
T Consensus       128 ~c~~~~iPlI~~g~~G~~G~v~vi~p~~t~Cy~C~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~f~-------------  194 (640)
T 1y8q_B          128 MCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGATIRNTPSEPIHCIVWAKYLFN-------------  194 (640)
T ss_dssp             HHHHHTCCEEEEEEETTEEEEEEECTTTSCCTTSSCCCCCCCCCTTTTTSCCCSHHHHHHHHHHHHH-------------
T ss_pred             HHHHcCCCEEEEEEecccceEEEECCCCCCCcccCCCCCCcccceeeecCCCCchHHHHHHHHHHHH-------------
Confidence            4889999999999999999999999999999999998888999999999999999999999999999             


Q ss_pred             cccCCCCCCCCcCCCCCCCchhhcC-hhHHHHhHHhhhcCcceeccccchhccccchHH-HHHHHhhHHHHHHHHhCCcc
Q psy9781          81 GQLFGEIDADEEVSPDTEDPEAVGD-AGAKAAASEATANGDVVRTSTRAWASACGYDPR-KLFAKFFDADIRYLISMSDL  158 (288)
Q Consensus        81 ~~lF~~~~~~~~~~~~~~dp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~a~-~~f~~~F~~~I~~Ll~~~~~  158 (288)
                       +|||..+..+++++++++|+.... ...+.+....+..+.+.+...+.|+ +|+.||+ ++|+++|+++|++||+|++|
T Consensus       195 -~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~f~k~F~~~I~~Ll~~~~f  272 (640)
T 1y8q_B          195 -QLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWA-KSTGYDPVKLFTKLFKDDIRYLLTMDKL  272 (640)
T ss_dssp             -HHHSCCCGGGCCSCCTTCTTSCCC---------------------CHHHH-HHTTSCHHHHHHHHHTHHHHHHTTCGGG
T ss_pred             -HHhCCcchhhhhcccccchhhhhhhhhhhhhhhhhhhhhHHHHHhhhhHH-HhHhHHHHHHHHHHHhhHHHHHHhCccc
Confidence             999998655678888888865311 1111122222334445555556786 7777776 59999999999999999999


Q ss_pred             ccCCCCCCccccccchhhhhC-C-CC--cCCCCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCceeee
Q psy9781         159 WKTRKAPQPLVWDTLSDAVAG-S-SK--ETDGGGLKDQRVWSVAECARVFERSVRELKTKFDVSRPGLDKSFYGDRLTVA  234 (288)
Q Consensus       159 W~~rr~P~Pl~~~~~~~~~~~-~-~~--~~~~~~~~~q~~ws~~e~~~vf~~s~s~L~rqf~~~~~~~~k~~~~~~l~fd  234 (288)
                      |++||+|+||+|+.+...... . ..  .....+++++.+|++.++.++|.+++.+|..++.....       ..+++||
T Consensus       273 W~~kr~P~pl~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~~~~~Fd  345 (640)
T 1y8q_B          273 WRKRKPPVPLDWAEVQSQGEETNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHLAEKGD-------GAELIWD  345 (640)
T ss_dssp             CSSSCCCCCCCHHHHHHC--------------CCCGGGSCCCHHHHHHHHHHHHHHHHHHHHHTCT-------TCCCCCC
T ss_pred             ccCCCCCCCcccCccccccccccccccccccccCCChhhhcChhhhhhhHHHHHHHHHHHhhhccc-------CCCcccC
Confidence            999999999999986432210 0 00  01122457889999999999999999999999865431       4578998


Q ss_pred             --hhhhhcccc-cceEeEEcCCCCCC-CCChhhhcccCeEEEchhchhhhhhheee
Q psy9781         235 --RNSALNFNP-DANIVAHHTSIISA-DFGVNYFKQFTLVMNALDNRVSKFSALLL  286 (288)
Q Consensus       235 --d~~~~dFV~-aaNLRA~~f~I~~~-~~~~~~~~~f~~V~nALdn~~Ar~~~l~~  286 (288)
                        |+.||+||+ +|||||++|||++. .|.++.++|  .|||||+|++|.++||+.
T Consensus       346 KDDd~h~dFV~aaaNlRA~~y~I~~~~~~~~K~iAG--~IIPAIATTnAiVaGl~~  399 (640)
T 1y8q_B          346 KDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAG--NIIPAIATTNAVIAGLIV  399 (640)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHH--TCCCCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhC--CcccchhhHHHHHHHHHH
Confidence              788999999 99999999999988 568999999  999999999999999863
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus} Back     alignment and structure
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Back     alignment and structure
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Back     alignment and structure
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Back     alignment and structure
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Back     alignment and structure
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Back     alignment and structure
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus} Back     alignment and structure
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Back     alignment and structure
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Back     alignment and structure
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Back     alignment and structure
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Back     alignment and structure
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A Back     alignment and structure
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Back     alignment and structure
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Back     alignment and structure
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Back     alignment and structure
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Back     alignment and structure
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Back     alignment and structure
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A Back     alignment and structure
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A Back     alignment and structure
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Back     alignment and structure
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Back     alignment and structure
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Back     alignment and structure
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A Back     alignment and structure
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Back     alignment and structure
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 288
d1yovb1426 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T 1e-17
d1yova1 529 c.111.1.2 (A:6-534) Amyloid beta precursor protein 4e-06
d1yova1 529 c.111.1.2 (A:6-534) Amyloid beta precursor protein 1e-04
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (197), Expect = 1e-17
 Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 18/104 (17%)

Query: 2   CLASEVPLIESGTAGYEGQVELIKKGETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCI 59
             +S VPLI+ GT G++G   +I  G T C EC  +  P    +P CTI + P  P HCI
Sbjct: 159 DPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCI 218

Query: 60  VWAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEAV 103
            + + L                Q   E    E V  D +DPE +
Sbjct: 219 EYVRML----------------QWPKEQPFGEGVPLDGDDPEHI 246
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
d1yovb1426 UBA3 {Human (Homo sapiens) [TaxId: 9606]} 99.83
d1yovb1 426 UBA3 {Human (Homo sapiens) [TaxId: 9606]} 98.01
d1jw9b_247 Molybdenum cofactor biosynthesis protein MoeB {Esc 95.7
d1jw9b_ 247 Molybdenum cofactor biosynthesis protein MoeB {Esc 95.26
d1yova1 529 Amyloid beta precursor protein-binding protein 1, 94.88
d1yova1 529 Amyloid beta precursor protein-binding protein 1, 90.97
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.2e-23  Score=197.92  Aligned_cols=65  Identities=40%  Similarity=0.773  Sum_probs=60.6

Q ss_pred             ccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCC--CCCCCCCCCCCCCCCCCchhHHHHHHHHhh
Q psy9781           3 LASEVPLIESGTAGYEGQVELIKKGETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCIVWAKHLFN   67 (288)
Q Consensus         3 v~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~--~~~~~~P~CTir~~P~~p~HcI~WAk~lF~   67 (288)
                      ...++|||+||+.|++||+++++|+.|+||+|.++  |+++++|+||||++|+.|+|||+|||.+.+
T Consensus       160 ~~~~iPlI~gg~~G~~G~~~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~hci~~ak~l~~  226 (426)
T d1yovb1         160 PSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQW  226 (426)
T ss_dssp             GGGCCCEEEEEEETTEEEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHH
T ss_pred             cccCCceEEeEEeeeEEEEEEECCCCCCCcCcCCCCCCCCCCCCcccccCCCCCchheeehhhhhcc
Confidence            35689999999999999999999999999999985  788999999999999999999999998765
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure