Psyllid ID: psy9794

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MSLKGRRDKFRDQSSFVKRNCSIGFQIRIFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAEIDQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mslkgrrdkfrdqssfvkrncsigfqirifprGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILktvnlkppidfvtapeiYKEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQtdfrtnfvphmSQLFEEdfqlgsgwttheslrpLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKnihdetlpttihTMSCKLLRNVVDFIhtknqaeidq
Flexible Loop (DISEMBL)
mslkgrrdkfrdqssfvkrncsigfqiRIFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIIlktvnlkppiDFVTAPEIYKEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAEIDQ
Low Complexity Region (SEG)
MSLKGRRDKFRDQSSFVKRNCSIGFQIRIFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQllvdgvlnllllCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAEIDQ
Disordered region (IsUnstruct)
***************FVKRNCSIGFQIRIFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHT********
Disordered Region (DISOPRED)
********************************GYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNL**************EIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVD************
Disordered Region (DISEMBL)
************QSSFVKRNCSIGFQIRIFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAEIDQ
Disordered Region (DISPRO)
***************************RIFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTK*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLKGRRDKFRDQSSFVKRNCSIGFQIRIFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAEIDQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	255	2.2.26 [Sep-21-2011]
Q9Y4A5	3859	Transformation/transcript	yes	N/A	0.878	0.058	0.562	2e-68
Q54T85	4582	Probable transcription-as	yes	N/A	0.839	0.046	0.354	2e-39
P38811	3744	Transcription-associated	yes	N/A	0.882	0.060	0.364	4e-36
Q10064	3655	Uncharacterized PI3/PI4-k	yes	N/A	0.815	0.056	0.391	9e-36
Q8I8U7	3803	Transcription-associated	no	N/A	0.482	0.032	0.588	2e-34
Q9HFE8	3699	Transcription-associated	no	N/A	0.854	0.058	0.343	4e-34

>sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-associated protein OS=Homo sapiens GN=TRRAP PE=1 SV=3

 Score =  258 bits (660), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 126/224 (56%), Positives = 166/224 (74%)

Query: 29  IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
           I PRG  SLK + ELP+I+VL+YQLYK N+   + EF+P+I+ T+ ++            
Sbjct: 214 IIPRGSLSLKVLAELPIIVVLMYQLYKLNIHNVVAEFVPLIMNTIAIQVSAQARQHKLYN 273

Query: 89  KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLI 148
           KE+Y DFI AQIKTLSFLAY++R YQ+++ K+SQ +V G+L LL  CP+E   +RKELLI
Sbjct: 274 KELYADFIAAQIKTLSFLAYIIRIYQELVTKYSQQMVKGMLQLLSNCPAETAHLRKELLI 333

Query: 149 AARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMS 208
           AA+HIL T+ R  F+P M +LF+E   +GSG+T  E+LRPL YSTLADLVHHVRQ LP+S
Sbjct: 334 AAKHILTTELRNQFIPCMDKLFDESILIGSGYTARETLRPLAYSTLADLVHHVRQHLPLS 393

Query: 209 DLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
           DL  AV LF+KNI DE+LP++I TMSCKLL N+VD I +K++ E
Sbjct: 394 DLSLAVQLFAKNIDDESLPSSIQTMSCKLLLNLVDCIRSKSEQE 437

Adapter protein, which is found in various multiprotein chromatin complexes with histone acetyltransferase activity (HAT), which gives a specific tag for epigenetic transcription activation. Component of the NuA4 histone acetyltransferase complex which is responsible for acetylation of nucleosomal histones H4 and H2A. Plays a central role in MYC transcription activation, and also participates in cell transformation by MYC. Required for p53/TP53-, E2F1- and E2F4-mediated transcription activation. Also involved in transcription activation mediated by the adenovirus E1A, a viral oncoprotein that deregulates transcription of key genes. Probably acts by linking transcription factors such as E1A, MYC or E2F1 to HAT complexes such as STAGA thereby allowing transcription activation. Probably not required in the steps following histone acetylation in processes of transcription activation. May be required for the mitotic checkpoint and normal cell cycle progression.
Homo sapiens (taxid: 9606)

>sp|Q54T85|TRA1_DICDI Probable transcription-associated protein 1 OS=Dictyostelium discoideum GN=tra1 PE=3 SV=2

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 143/217 (65%), Gaps = 3/217 (1%)

Query: 32  RGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEI 91
           +  +S K + E P++++L++QLY   +  ++ +FIP+I++T++L+ P +       +   
Sbjct: 304 KSIESFKILTECPIVVILLFQLYNSYMSSNVPKFIPLIIETLSLQAPANSTVT---HHSQ 360

Query: 92  YVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAAR 151
           YVDFI AQ+KTL  LAY+++++ + + ++S      V+ LL  CP+  +++RKELL+  R
Sbjct: 361 YVDFIAAQVKTLYLLAYVLKWHIEQIKQYSDRFPRSVIQLLQNCPAHSSAIRKELLVTLR 420

Query: 152 HILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLI 211
           HIL +DF++ F+ ++  L +E   LG+  T++ESLR + Y +LAD +H++R  L ++ + 
Sbjct: 421 HILSSDFKSKFIVYLDLLLDEKIILGTSRTSYESLRSMAYGSLADFIHNMRNELNINQIS 480

Query: 212 KAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTK 248
           K V ++S+++HD+T P +I  MS KL+ +++D I  K
Sbjct: 481 KVVAIYSRHLHDQTNPVSIQIMSVKLIISLMDVIQRK 517

Dictyostelium discoideum (taxid: 44689)

>sp|P38811|TRA1_YEAST Transcription-associated protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRA1 PE=1 SV=1

 Score =  151 bits (382), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 22/247 (8%)

Query: 16  FVKRNCSIGFQIRIFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNL 75
           F     S G +  +F     S K + E P+ +V +Y  YK+     L EF P+I+  +N+
Sbjct: 205 FENSTSSNGLRSSMF-----SFKILSECPITMVTLYSSYKQLTSTSLPEFTPLIMNLLNI 259

Query: 76  K---------------PPIDFVTAPEIYKEIYVDFIGAQIKTLSFLAYL-VRFYQ-DILN 118
           +                    ++   I +  Y DFI AQIK  SFLAY+ +R Y  + L 
Sbjct: 260 QIKQQQEAREQAESRGEHFTSISTEIINRPAYCDFILAQIKATSFLAYVFIRGYAPEFLQ 319

Query: 119 KHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGS 178
            +   + D ++ LL  CPSE++S RKELL A RHIL T+++  F+P +  LF+E   +G+
Sbjct: 320 DYVNFVPDLIIRLLQDCPSELSSARKELLHATRHILSTNYKKLFLPKLDYLFDERILIGN 379

Query: 179 GWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLL 238
           G+T HE+LRPL YST+AD +H++R  L +S++ K + +++  + DE+L  T+  MS KLL
Sbjct: 380 GFTMHETLRPLAYSTVADFIHNIRSELQLSEIEKTIKIYTGYLLDESLALTVQIMSAKLL 439

Query: 239 RNVVDFI 245
            N+V+ I
Sbjct: 440 LNLVERI 446

Essential component of histone acetyltransferase (HAT) complexes, which serves as a target for activators during recruitment of HAT complexes. Essential for vegetative growth. Functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and SLIK. SAGA is involved in RNA polymerase II-dependent transcriptional regulation of approximately 10% of yeast genes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction (SPT3, SPT8 and SPT20) and promoter selectivity, interaction with transcription activators (GCN5, ADA2, ADA3 and TRA1), and chromatin modification through histone acetylation (GCN5) and deubiquitination (UBP8). SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA via upstream activating sequences (UASs). SALSA, an altered form of SAGA, may be involved in positive transcriptional regulation. SLIK is proposed to have partly overlapping functions with SAGA. It preferentially acetylates methylated histone H3, at least after activation at the GAL1-10 locus.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q10064|YAMB_SCHPO Uncharacterized PI3/PI4-kinase family protein C1F5.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1F5.11c PE=3 SV=1

 Score =  150 bits (379), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 132/222 (59%), Gaps = 14/222 (6%)

Query: 35  QSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVD 94
           QS +   E P+IIVL+ Q Y++     ++  IP  LK V +  PID  +   I K+  +D
Sbjct: 205 QSFRVYVECPVIIVLILQAYRQAAFPGVQAIIPCFLKMVQIDVPIDIASYAMIEKDSSID 264

Query: 95  FIG-------------AQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTS 141
           FI              AQ+KTLSFLAY++R + + L++   ++ D V+ LL  CP ++  
Sbjct: 265 FIEFIRNKYQYRNFFMAQVKTLSFLAYILRTHPNTLSE-KDIIPDIVIKLLRRCPFDMCF 323

Query: 142 MRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHV 201
            RKELL+A RHIL T+ ++ FV  +  L + +  LG+G  T + LRPL +STLADL+HHV
Sbjct: 324 ARKELLVATRHILSTNLKSLFVKKLDFLLDLNILLGNGVGTQKLLRPLAFSTLADLLHHV 383

Query: 202 RQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVD 243
           R  L  + + K++ ++S N+HD TL   + TM  +L+ N+VD
Sbjct: 384 RDELNETQIRKSIMIYSTNMHDLTLSIGLQTMGARLILNMVD 425

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q8I8U7|TRA1_DROME Transcription-associated protein 1 OS=Drosophila melanogaster GN=Nipped-A PE=1 SV=3

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/124 (58%), Positives = 89/124 (71%), Gaps = 1/124 (0%)

Query: 129 LNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRP 188
           LNL+  CP E   +RKELLIAARHI  TD R  F+P + QLF+ED  +G G  T +S+RP
Sbjct: 370 LNLMKNCPKEAAHLRKELLIAARHIFATDLRQKFIPSIEQLFDEDLLIGKG-VTLDSIRP 428

Query: 189 LVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTK 248
           L YSTLADL HHVRQ L +  LIKAV+LFSKN+HDE+L   I TMSCKLL N+VD +   
Sbjct: 429 LAYSTLADLAHHVRQSLNIDVLIKAVNLFSKNVHDESLAVGIQTMSCKLLLNLVDCLRHH 488

Query: 249 NQAE 252
           ++ E
Sbjct: 489 SETE 492

Part of the Tip60 chromatin-remodeling complex which is involved in DNA repair. Upon induction of DNA double-strand breaks, this complex acetylates phosphorylated H2AV in nucleosomes and exchanges it with unmodified H2AV.

Drosophila melanogaster (taxid: 7227)

>sp|Q9HFE8|TRA1_SCHPO Transcription-associated protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tra1 PE=3 SV=1

 Score =  145 bits (365), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 131/233 (56%), Gaps = 15/233 (6%)

Query: 28  RIFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPP--IDFVTAP 85
           ++ P+   S K   E P+I+ L++Q YK+ + K L    P++L+ ++L+PP   +     
Sbjct: 230 KMIPKASSSFKVTAEFPIIVFLLFQTYKDLIPKMLPLLAPLVLQFISLRPPPQAEARRLA 289

Query: 86  EIYKEIYV-------------DFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLL 132
           E  KE+++             D I AQIK+ SFLAYL+R +   L +    +    L L 
Sbjct: 290 ESQKEVFIGVVPSLRRNHLYNDLISAQIKSFSFLAYLLRSFGAALKQFESSIPICTLQLF 349

Query: 133 LLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYS 192
           + CPSE+   R+ELL+A RH+L TD+   F+P++ QL +    +GSG T+  SLRP+ +S
Sbjct: 350 MDCPSELYQTRRELLVATRHVLSTDYLRGFLPYVDQLLDTKILVGSGITSQHSLRPMAFS 409

Query: 193 TLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFI 245
            LAD++H+VR  L    + K + L+   + D+   + I  M+ KL+ N+V+ I
Sbjct: 410 MLADMLHYVRMELSPQQIYKVILLYFSILMDDFYTSAIQAMATKLILNLVERI 462

Essential component of histone acetyltransferase (HAT) complexes, which serves as a target for activators during recruitment of HAT complexes. Essential for vegetative growth. Functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and SLIK. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA via upstream activating sequences (UASs). SALSA, an altered form of SAGA, may be involved in positive transcriptional regulation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
345480161	3803	PREDICTED: transformation/transcription	0.878	0.058	0.625	1e-80
270008829	3674	hypothetical protein TcasGA2_TC015434 [T	0.878	0.060	0.629	4e-80
321479245	3841	hypothetical protein DAPPUDRAFT_300174 [	0.878	0.058	0.611	1e-76
242011206	3758	transformation/transcription domain-asso	0.878	0.059	0.598	2e-75
357605302	2787	hypothetical protein KGM_21276 [Danaus p	0.878	0.080	0.589	2e-75
383854902	3780	PREDICTED: transformation/transcription	0.894	0.060	0.574	2e-75
383854900	3785	PREDICTED: transformation/transcription	0.878	0.059	0.575	3e-74
118786622	3805	AGAP005533-PA [Anopheles gambiae str. PE	0.878	0.058	0.571	4e-74
340724340	3783	PREDICTED: transformation/transcription	0.878	0.059	0.571	5e-74
350397835	3783	PREDICTED: transformation/transcription	0.878	0.059	0.571	6e-74

>gi|345480161|ref|XP_001607204.2| PREDICTED: transformation/transcription domain-associated protein-like [Nasonia vitripennis]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 140/224 (62%), Positives = 182/224 (81%)

Query: 29  IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
           + P+   SLK +QELP+I+VL+YQ+YK+NV +D+ +FIP+I+ T+ L+P      +P   
Sbjct: 210 LIPKAVLSLKVLQELPIIVVLMYQIYKQNVHQDVSDFIPLIMTTITLQPSPQHRASPAFN 269

Query: 89  KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLI 148
           KE++VDF+GAQIKTLSFLAY++R YQD++ +HS ++V G+L LL LCP EV  +RKELLI
Sbjct: 270 KEVFVDFMGAQIKTLSFLAYIIRIYQDVVAQHSTMMVKGMLGLLSLCPMEVAHLRKELLI 329

Query: 149 AARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMS 208
           AARHIL TD RT FVPHM +LF+E+  LG GWTT+ESLRPL YSTLADLVHHVRQLLP+S
Sbjct: 330 AARHILATDLRTKFVPHMERLFDEEVLLGHGWTTYESLRPLAYSTLADLVHHVRQLLPLS 389

Query: 209 DLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
           DL +AVHLFSKN+HD++LPT+I TMSCKLL N+V+ I  ++ AE
Sbjct: 390 DLARAVHLFSKNVHDQSLPTSIQTMSCKLLLNLVECIRQRSDAE 433

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008829|gb|EFA05277.1| hypothetical protein TcasGA2_TC015434 [Tribolium castaneum]

 Score =  303 bits (777), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 141/224 (62%), Positives = 181/224 (80%)

Query: 29  IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
           + P+   SLK +QELP+I+VL+YQLYK++V +D+ +FIP+I+KT+ L+P  +   AP   
Sbjct: 211 LIPKAVLSLKVLQELPIIVVLMYQLYKQSVHQDVSDFIPLIMKTITLQPSPEQRQAPTFN 270

Query: 89  KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLI 148
           KEI+VDF+GAQ+KTLSFLAY+++FY + +  HS ++V G+L LL+LCP EV  +R+ELLI
Sbjct: 271 KEIFVDFMGAQVKTLSFLAYIIKFYLEHVQSHSAMMVQGMLGLLMLCPMEVAHLRRELLI 330

Query: 149 AARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMS 208
           AARHIL TD R  FVPHM +LF+ED  LG GWTTHESLRPL YSTLADLVHHVRQ LP+S
Sbjct: 331 AARHILATDLRNRFVPHMEKLFDEDVLLGRGWTTHESLRPLAYSTLADLVHHVRQQLPLS 390

Query: 209 DLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
           DL +AVHLFSKN+HD+TL TTI TMSCKLL N+VD I  +++AE
Sbjct: 391 DLTRAVHLFSKNVHDDTLATTIQTMSCKLLLNLVDCIRARSEAE 434

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321479245|gb|EFX90201.1| hypothetical protein DAPPUDRAFT_300174 [Daphnia pulex]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 137/224 (61%), Positives = 174/224 (77%)

Query: 29  IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
           + P+G  SLK +QELP+I+VL+YQLYK NV +D+ EFIP+I+ T+ L+P       P   
Sbjct: 216 LIPKGVLSLKVLQELPIIVVLMYQLYKHNVHQDVAEFIPLIMTTITLQPSAQHKANPAFN 275

Query: 89  KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLI 148
           KEI+VDFIGAQIKTLSFLAY++R YQ+ + + + L+V G+L LL LCP EV  +RKELLI
Sbjct: 276 KEIFVDFIGAQIKTLSFLAYIIRIYQEAVAQQATLMVKGILGLLSLCPMEVAHLRKELLI 335

Query: 149 AARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMS 208
           A+RHIL TD R +F+P M +LF+E+   G GWTT+ESLRPL YSTLADLVHHVRQ LPM 
Sbjct: 336 ASRHILATDLRLHFIPFMERLFDENLLFGKGWTTNESLRPLAYSTLADLVHHVRQHLPML 395

Query: 209 DLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
           DL +AVHLFSKN+HDE+LPT+I TMSCKLL N+V+ I  ++  E
Sbjct: 396 DLARAVHLFSKNVHDESLPTSIQTMSCKLLLNLVECIRQRSDVE 439

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011206|ref|XP_002426346.1| transformation/transcription domain-associated protein, putative [Pediculus humanus corporis] gi|212510423|gb|EEB13608.1| transformation/transcription domain-associated protein, putative [Pediculus humanus corporis]

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 134/224 (59%), Positives = 176/224 (78%)

Query: 29  IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
           + P+G  SLK +QELP+I+VL+YQLYK+NV++DL +FIP+I+ T+ L+P       P   
Sbjct: 176 LIPKGVLSLKVLQELPIIVVLMYQLYKQNVQQDLTDFIPLIMSTITLQPSSQQRNNPLFN 235

Query: 89  KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLI 148
           KEI+VDF+GAQIKTLSFLAY++R +Q+++ +HS  +V G+L LL LCP EV  +RKELLI
Sbjct: 236 KEIFVDFMGAQIKTLSFLAYIIRVFQELVAQHSHSMVKGMLGLLQLCPMEVVHLRKELLI 295

Query: 149 AARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMS 208
           AARHIL TD R+ FVP+M  LF ED  LG GWTT ESLRPL YSTLADLVHHVRQ+L ++
Sbjct: 296 AARHILATDLRSKFVPYMEHLFNEDIWLGRGWTTRESLRPLAYSTLADLVHHVRQMLQLN 355

Query: 209 DLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
           DL K +HLFSKN+HD+++PT I TMSCKLL N+VD +  +++ +
Sbjct: 356 DLDKVIHLFSKNVHDDSVPTCIQTMSCKLLLNLVDCVRCRSEND 399

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357605302|gb|EHJ64550.1| hypothetical protein KGM_21276 [Danaus plexippus]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/224 (58%), Positives = 173/224 (77%)

Query: 29  IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
           + PR   SLK +QELP+I+VL+YQLYK+NV +++  FIP+I++T+ L+P      +    
Sbjct: 219 LIPRSVLSLKVIQELPIIVVLMYQLYKQNVHQEVSNFIPLIMETITLQPATTHRQSSSFN 278

Query: 89  KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLI 148
           KE++VDF+GAQIKTL+FLAY++R YQD +  H+ L+V G++ LL LCP EV  +RKEL+I
Sbjct: 279 KEVFVDFMGAQIKTLAFLAYIIRIYQDTIANHANLMVKGIIGLLTLCPPEVAHLRKELVI 338

Query: 149 AARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMS 208
           A RHIL TD R  FVP+M +LF+E+  LG GWT HESLRPL YSTLADLVHHVRQ LP++
Sbjct: 339 ATRHILATDLRLKFVPYMERLFDEEVLLGGGWTVHESLRPLAYSTLADLVHHVRQHLPLT 398

Query: 209 DLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
           DL  A HLFSKN+HDE+LPT+I TMSCKLL N+VD I  ++ +E
Sbjct: 399 DLAIAAHLFSKNVHDESLPTSIQTMSCKLLLNLVDCIRQRSDSE 442

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854902|ref|XP_003702959.1| PREDICTED: transformation/transcription domain-associated protein isoform 2 [Megachile rotundata]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 131/228 (57%), Positives = 176/228 (77%)

Query: 25  FQIRIFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTA 84
           FQ  + P+   SLK +QELP+I+VL+ QLYK+NV +D+ +FIP+++ T+ L+P      +
Sbjct: 201 FQYNLIPKAVLSLKVLQELPIIVVLMNQLYKQNVHQDVSDFIPLVITTITLQPSPQHRAS 260

Query: 85  PEIYKEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRK 144
           P   KE++VDF+GAQIKTLSFLAY++R YQD++++HS LLV G+L L  LCP EV  +RK
Sbjct: 261 PGFNKEVFVDFMGAQIKTLSFLAYVIRVYQDVVSQHSSLLVKGILGLFTLCPMEVAHLRK 320

Query: 145 ELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQL 204
           EL+IA+RHIL TD R  F+PHM   F+ED  +G GWTTHESLRPL YSTLADLVHHVR L
Sbjct: 321 ELVIASRHILATDLRNKFIPHMECFFDEDIFIGRGWTTHESLRPLAYSTLADLVHHVRLL 380

Query: 205 LPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
           LP+SD+ +AVHL+SKN+ D++LPT +  +SCKLL N+VD +  ++ AE
Sbjct: 381 LPLSDVSRAVHLYSKNLLDQSLPTAVQMVSCKLLMNLVDTVRQRSDAE 428

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854900|ref|XP_003702958.1| PREDICTED: transformation/transcription domain-associated protein isoform 1 [Megachile rotundata]

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 129/224 (57%), Positives = 174/224 (77%)

Query: 29  IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
           + P+   SLK +QELP+I+VL+ QLYK+NV +D+ +FIP+++ T+ L+P      +P   
Sbjct: 210 LIPKAVLSLKVLQELPIIVVLMNQLYKQNVHQDVSDFIPLVITTITLQPSPQHRASPGFN 269

Query: 89  KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLI 148
           KE++VDF+GAQIKTLSFLAY++R YQD++++HS LLV G+L L  LCP EV  +RKEL+I
Sbjct: 270 KEVFVDFMGAQIKTLSFLAYVIRVYQDVVSQHSSLLVKGILGLFTLCPMEVAHLRKELVI 329

Query: 149 AARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMS 208
           A+RHIL TD R  F+PHM   F+ED  +G GWTTHESLRPL YSTLADLVHHVR LLP+S
Sbjct: 330 ASRHILATDLRNKFIPHMECFFDEDIFIGRGWTTHESLRPLAYSTLADLVHHVRLLLPLS 389

Query: 209 DLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
           D+ +AVHL+SKN+ D++LPT +  +SCKLL N+VD +  ++ AE
Sbjct: 390 DVSRAVHLYSKNLLDQSLPTAVQMVSCKLLMNLVDTVRQRSDAE 433

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118786622|ref|XP_556172.2| AGAP005533-PA [Anopheles gambiae str. PEST] gi|116126412|gb|EAL39853.2| AGAP005533-PA [Anopheles gambiae str. PEST]

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 128/224 (57%), Positives = 178/224 (79%)

Query: 29  IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
           + P+G  SLK +QELP+I+VL+YQ+YK+N+ +++ EFIP+++ T++L+P +    +P   
Sbjct: 226 LIPKGINSLKVLQELPIIVVLLYQIYKQNLHQEVAEFIPLVMSTISLQPSLAHKNSPGFN 285

Query: 89  KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLI 148
           KE YVDF+GAQIKTL+F AY++R + D ++ H+  +V G++NLL  CP EV S+RKELL+
Sbjct: 286 KETYVDFMGAQIKTLTFSAYILRLFPDAVHTHASTMVKGMINLLESCPKEVASLRKELLV 345

Query: 149 AARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMS 208
           A+RHILQT+FR +FVP + +LF++D  LG GWTTHE+LRPL YSTLADLVHH+RQ L + 
Sbjct: 346 ASRHILQTEFRNHFVPMIEKLFDDDVLLGKGWTTHENLRPLAYSTLADLVHHIRQQLSLQ 405

Query: 209 DLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
            L KAVHLF+KNIHDE+LPT+I TMSCKLL N+V+ I  K++ E
Sbjct: 406 ALSKAVHLFAKNIHDESLPTSIQTMSCKLLLNLVECIRLKSEVE 449

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724340|ref|XP_003400540.1| PREDICTED: transformation/transcription domain-associated protein-like isoform 1 [Bombus terrestris] gi|340724342|ref|XP_003400541.1| PREDICTED: transformation/transcription domain-associated protein-like isoform 2 [Bombus terrestris]

 Score =  283 bits (724), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 128/224 (57%), Positives = 174/224 (77%)

Query: 29  IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
           + P+   SLK +QELP+I+VL+ QLYK+NV +D+ +FIP+++ T+ L+P      +P   
Sbjct: 210 LIPKAVLSLKVLQELPIIVVLMNQLYKQNVHQDVSDFIPLVITTITLQPSPQHRASPGFN 269

Query: 89  KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLI 148
           KE++VDF+GAQIKTLSFLAY++R YQD++++HS +LV G+L L  LCP EV  +RKEL+I
Sbjct: 270 KEVFVDFMGAQIKTLSFLAYVIRVYQDVVSQHSSILVKGILGLFTLCPMEVAHLRKELVI 329

Query: 149 AARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMS 208
           A+RHIL TD R  F+PHM   F+ED  +G GWTTHESLRPL YSTLADLVHHVR LLP+S
Sbjct: 330 ASRHILATDLRNKFIPHMECFFDEDIFIGRGWTTHESLRPLAYSTLADLVHHVRLLLPLS 389

Query: 209 DLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
           D+ +AVHL+SKN+ D++LPT +  +SCKLL N+VD +  ++ AE
Sbjct: 390 DVSRAVHLYSKNLLDQSLPTAVQMVSCKLLMNLVDTVRQRSDAE 433

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397835|ref|XP_003485007.1| PREDICTED: transformation/transcription domain-associated protein-like isoform 1 [Bombus impatiens] gi|350397846|ref|XP_003485008.1| PREDICTED: transformation/transcription domain-associated protein-like isoform 2 [Bombus impatiens]

 Score =  283 bits (723), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 128/224 (57%), Positives = 174/224 (77%)

Query: 29  IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
           + P+   SLK +QELP+I+VL+ QLYK+NV +D+ +FIP+++ T+ L+P      +P   
Sbjct: 210 LIPKAVLSLKVLQELPIIVVLMNQLYKQNVHQDVSDFIPLVITTITLQPSPQHRASPGFN 269

Query: 89  KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLI 148
           KE++VDF+GAQIKTLSFLAY++R YQD++++HS +LV G+L L  LCP EV  +RKEL+I
Sbjct: 270 KEVFVDFMGAQIKTLSFLAYVIRVYQDVVSQHSSILVKGILGLFTLCPMEVAHLRKELVI 329

Query: 149 AARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMS 208
           A+RHIL TD R  F+PHM   F+ED  +G GWTTHESLRPL YSTLADLVHHVR LLP+S
Sbjct: 330 ASRHILATDLRNKFIPHMECFFDEDIFIGRGWTTHESLRPLAYSTLADLVHHVRLLLPLS 389

Query: 209 DLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
           D+ +AVHL+SKN+ D++LPT +  +SCKLL N+VD +  ++ AE
Sbjct: 390 DVSRAVHLYSKNLLDQSLPTAVQMVSCKLLMNLVDTVRQRSDAE 433

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
UNIPROTKB|E1BKJ5	3831	TRRAP "Uncharacterized protein	0.874	0.058	0.542	6.3e-59
UNIPROTKB|J9NV05	3847	TRRAP "Uncharacterized protein	0.874	0.057	0.542	6.4e-59
UNIPROTKB|F2Z2U4	3847	TRRAP "Transformation/transcri	0.874	0.057	0.542	6.4e-59
RGD|1305446	3848	Trrap "transformation/transcri	0.874	0.057	0.542	6.4e-59
UNIPROTKB|Q9Y4A5	3859	TRRAP "Transformation/transcri	0.874	0.057	0.542	6.4e-59
UNIPROTKB|E2RJS8	3861	TRRAP "Uncharacterized protein	0.874	0.057	0.542	6.4e-59
UNIPROTKB|E1BRF2	3815	TRRAP "Uncharacterized protein	0.874	0.058	0.542	8e-59
UNIPROTKB|E1C796	3819	TRRAP "Uncharacterized protein	0.874	0.058	0.542	8.1e-59
UNIPROTKB|H0Y4W2	3588	TRRAP "Transformation/transcri	0.592	0.042	0.576	5.1e-41
DICTYBASE|DDB_G0281947	4582	tra1 "TRRAP family protein kin	0.839	0.046	0.341	1.1e-35

UNIPROTKB|E1BKJ5 TRRAP "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 623 (224.4 bits), Expect = 6.3e-59, P = 6.3e-59
 Identities = 122/225 (54%), Positives = 162/225 (72%)

Query:    29 IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
             I PRG  SLK + ELP+I+VL+YQLYK N+   + EF+P+I+ T+ ++         ++Y
Sbjct:   214 IIPRGSLSLKVLAELPIIVVLMYQLYKLNIHNVVAEFVPLIMNTIAIQVSAQ-ARQHKLY 272

Query:    89 -KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQXXXXXXXXXXXXCPSEVTSMRKELL 147
              KE+Y DFI AQIKTLSFLAY++R YQ+++ K+SQ            CP+E   +RKELL
Sbjct:   273 NKELYADFIAAQIKTLSFLAYIIRIYQELVTKYSQQMVKGMLQLLSNCPAETAHLRKELL 332

Query:   148 IAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPM 207
             IAA+HIL T+ R  F+P M +LF+E   +GSG+T  E+LRPL YSTLADLVHHVRQ LP+
Sbjct:   333 IAAKHILTTELRNQFIPCMDKLFDESILIGSGYTARETLRPLAYSTLADLVHHVRQHLPL 392

Query:   208 SDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
             SDL  AV LF+KNI DE+LP++I TMSCKLL N+VD I +K++ E
Sbjct:   393 SDLSLAVQLFAKNIDDESLPSSIQTMSCKLLLNLVDCIRSKSEQE 437

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0030914 "STAGA complex" evidence=IEA

GO:0016578 "histone deubiquitination" evidence=IEA

GO:0007093 "mitotic cell cycle checkpoint" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|J9NV05 TRRAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 623 (224.4 bits), Expect = 6.4e-59, P = 6.4e-59
 Identities = 122/225 (54%), Positives = 162/225 (72%)

Query:    29 IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
             I PRG  SLK + ELP+I+VL+YQLYK N+   + EF+P+I+ T+ ++         ++Y
Sbjct:   214 IIPRGSLSLKVLAELPIIVVLMYQLYKLNIHNVVAEFVPLIMNTIAIQVSAQ-ARQHKLY 272

Query:    89 -KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQXXXXXXXXXXXXCPSEVTSMRKELL 147
              KE+Y DFI AQIKTLSFLAY++R YQ+++ K+SQ            CP+E   +RKELL
Sbjct:   273 NKELYADFIAAQIKTLSFLAYIIRIYQELVTKYSQQMVKGMLQLLSNCPAETAHLRKELL 332

Query:   148 IAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPM 207
             IAA+HIL T+ R  F+P M +LF+E   +GSG+T  E+LRPL YSTLADLVHHVRQ LP+
Sbjct:   333 IAAKHILTTELRNQFIPCMDKLFDESILIGSGYTARETLRPLAYSTLADLVHHVRQHLPL 392

Query:   208 SDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
             SDL  AV LF+KNI DE+LP++I TMSCKLL N+VD I +K++ E
Sbjct:   393 SDLSLAVQLFAKNIDDESLPSSIQTMSCKLLLNLVDCIRSKSEQE 437

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|F2Z2U4 TRRAP "Transformation/transcription domain-associated protein" [Homo sapiens (taxid:9606)]

 Score = 623 (224.4 bits), Expect = 6.4e-59, P = 6.4e-59
 Identities = 122/225 (54%), Positives = 162/225 (72%)

Query:    29 IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
             I PRG  SLK + ELP+I+VL+YQLYK N+   + EF+P+I+ T+ ++         ++Y
Sbjct:   214 IIPRGSLSLKVLAELPIIVVLMYQLYKLNIHNVVAEFVPLIMNTIAIQVSAQ-ARQHKLY 272

Query:    89 -KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQXXXXXXXXXXXXCPSEVTSMRKELL 147
              KE+Y DFI AQIKTLSFLAY++R YQ+++ K+SQ            CP+E   +RKELL
Sbjct:   273 NKELYADFIAAQIKTLSFLAYIIRIYQELVTKYSQQMVKGMLQLLSNCPAETAHLRKELL 332

Query:   148 IAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPM 207
             IAA+HIL T+ R  F+P M +LF+E   +GSG+T  E+LRPL YSTLADLVHHVRQ LP+
Sbjct:   333 IAAKHILTTELRNQFIPCMDKLFDESILIGSGYTARETLRPLAYSTLADLVHHVRQHLPL 392

Query:   208 SDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
             SDL  AV LF+KNI DE+LP++I TMSCKLL N+VD I +K++ E
Sbjct:   393 SDLSLAVQLFAKNIDDESLPSSIQTMSCKLLLNLVDCIRSKSEQE 437

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

RGD|1305446 Trrap "transformation/transcription domain-associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 623 (224.4 bits), Expect = 6.4e-59, P = 6.4e-59
 Identities = 122/225 (54%), Positives = 162/225 (72%)

Query:    29 IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
             I PRG  SLK + ELP+I+VL+YQLYK N+   + EF+P+I+ T+ ++         ++Y
Sbjct:   214 IIPRGSLSLKVLAELPIIVVLMYQLYKLNIHNVVAEFVPLIMNTIAIQVSAQ-ARQHKLY 272

Query:    89 -KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQXXXXXXXXXXXXCPSEVTSMRKELL 147
              KE+Y DFI AQIKTLSFLAY++R YQ+++ K+SQ            CP+E   +RKELL
Sbjct:   273 NKELYADFIAAQIKTLSFLAYIIRIYQELVTKYSQQMVKGMLQLLSNCPAETAHLRKELL 332

Query:   148 IAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPM 207
             IAA+HIL T+ R  F+P M +LF+E   +GSG+T  E+LRPL YSTLADLVHHVRQ LP+
Sbjct:   333 IAAKHILTTELRNQFIPCMDKLFDESILIGSGYTARETLRPLAYSTLADLVHHVRQHLPL 392

Query:   208 SDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
             SDL  AV LF+KNI DE+LP++I TMSCKLL N+VD I +K++ E
Sbjct:   393 SDLSLAVQLFAKNIDDESLPSSIQTMSCKLLLNLVDCIRSKSEQE 437

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|Q9Y4A5 TRRAP "Transformation/transcription domain-associated protein" [Homo sapiens (taxid:9606)]

 Score = 623 (224.4 bits), Expect = 6.4e-59, P = 6.4e-59
 Identities = 122/225 (54%), Positives = 162/225 (72%)

Query:    29 IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
             I PRG  SLK + ELP+I+VL+YQLYK N+   + EF+P+I+ T+ ++         ++Y
Sbjct:   214 IIPRGSLSLKVLAELPIIVVLMYQLYKLNIHNVVAEFVPLIMNTIAIQVSAQ-ARQHKLY 272

Query:    89 -KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQXXXXXXXXXXXXCPSEVTSMRKELL 147
              KE+Y DFI AQIKTLSFLAY++R YQ+++ K+SQ            CP+E   +RKELL
Sbjct:   273 NKELYADFIAAQIKTLSFLAYIIRIYQELVTKYSQQMVKGMLQLLSNCPAETAHLRKELL 332

Query:   148 IAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPM 207
             IAA+HIL T+ R  F+P M +LF+E   +GSG+T  E+LRPL YSTLADLVHHVRQ LP+
Sbjct:   333 IAAKHILTTELRNQFIPCMDKLFDESILIGSGYTARETLRPLAYSTLADLVHHVRQHLPL 392

Query:   208 SDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
             SDL  AV LF+KNI DE+LP++I TMSCKLL N+VD I +K++ E
Sbjct:   393 SDLSLAVQLFAKNIDDESLPSSIQTMSCKLLLNLVDCIRSKSEQE 437

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007093 "mitotic cell cycle checkpoint" evidence=IEA

GO:0016573 "histone acetylation" evidence=NAS

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0003712 "transcription cofactor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043968 "histone H2A acetylation" evidence=IDA

GO:0043967 "histone H4 acetylation" evidence=IDA

GO:0033276 "transcription factor TFTC complex" evidence=IDA

GO:0016578 "histone deubiquitination" evidence=IDA

GO:0000125 "PCAF complex" evidence=NAS

GO:0030914 "STAGA complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|E2RJS8 TRRAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 623 (224.4 bits), Expect = 6.4e-59, P = 6.4e-59
 Identities = 122/225 (54%), Positives = 162/225 (72%)

Query:    29 IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
             I PRG  SLK + ELP+I+VL+YQLYK N+   + EF+P+I+ T+ ++         ++Y
Sbjct:   214 IIPRGSLSLKVLAELPIIVVLMYQLYKLNIHNVVAEFVPLIMNTIAIQVSAQ-ARQHKLY 272

Query:    89 -KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQXXXXXXXXXXXXCPSEVTSMRKELL 147
              KE+Y DFI AQIKTLSFLAY++R YQ+++ K+SQ            CP+E   +RKELL
Sbjct:   273 NKELYADFIAAQIKTLSFLAYIIRIYQELVTKYSQQMVKGMLQLLSNCPAETAHLRKELL 332

Query:   148 IAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPM 207
             IAA+HIL T+ R  F+P M +LF+E   +GSG+T  E+LRPL YSTLADLVHHVRQ LP+
Sbjct:   333 IAAKHILTTELRNQFIPCMDKLFDESILIGSGYTARETLRPLAYSTLADLVHHVRQHLPL 392

Query:   208 SDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
             SDL  AV LF+KNI DE+LP++I TMSCKLL N+VD I +K++ E
Sbjct:   393 SDLSLAVQLFAKNIDDESLPSSIQTMSCKLLLNLVDCIRSKSEQE 437

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0030914 "STAGA complex" evidence=IEA

GO:0016578 "histone deubiquitination" evidence=IEA

GO:0007093 "mitotic cell cycle checkpoint" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|E1BRF2 TRRAP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 622 (224.0 bits), Expect = 8.0e-59, P = 8.0e-59
 Identities = 122/225 (54%), Positives = 163/225 (72%)

Query:    29 IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
             I PRG  SLK + ELP+I+VL+YQLYK N+   + EF+P+I+ T+ ++         ++Y
Sbjct:   214 IIPRGSLSLKVLAELPIIVVLMYQLYKLNIHNVVAEFVPLIMNTIIIQVSAQ-ARQHKLY 272

Query:    89 -KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQXXXXXXXXXXXXCPSEVTSMRKELL 147
              KE+Y DFI AQIKTLSFLAY++R YQ+++ K+SQ            CP+E   +RKELL
Sbjct:   273 NKELYADFIAAQIKTLSFLAYIIRIYQELVAKYSQQMVKGMLQLLSNCPAETAHLRKELL 332

Query:   148 IAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPM 207
             IAA+HIL TD R+ F+P M +LF+E   +GSG+T  E+LRPL YSTLADLVHHVRQ LP+
Sbjct:   333 IAAKHILTTDLRSQFIPCMDKLFDESILIGSGYTARETLRPLAYSTLADLVHHVRQHLPL 392

Query:   208 SDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
             +DL  AV LF+KNI DE+LP++I TMSCKLL N+VD I +K++ E
Sbjct:   393 NDLSLAVQLFAKNIDDESLPSSIQTMSCKLLLNLVDCIRSKSEQE 437

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|E1C796 TRRAP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 622 (224.0 bits), Expect = 8.1e-59, P = 8.1e-59
 Identities = 122/225 (54%), Positives = 163/225 (72%)

Query:    29 IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
             I PRG  SLK + ELP+I+VL+YQLYK N+   + EF+P+I+ T+ ++         ++Y
Sbjct:   214 IIPRGSLSLKVLAELPIIVVLMYQLYKLNIHNVVAEFVPLIMNTIIIQVSAQ-ARQHKLY 272

Query:    89 -KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQXXXXXXXXXXXXCPSEVTSMRKELL 147
              KE+Y DFI AQIKTLSFLAY++R YQ+++ K+SQ            CP+E   +RKELL
Sbjct:   273 NKELYADFIAAQIKTLSFLAYIIRIYQELVAKYSQQMVKGMLQLLSNCPAETAHLRKELL 332

Query:   148 IAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPM 207
             IAA+HIL TD R+ F+P M +LF+E   +GSG+T  E+LRPL YSTLADLVHHVRQ LP+
Sbjct:   333 IAAKHILTTDLRSQFIPCMDKLFDESILIGSGYTARETLRPLAYSTLADLVHHVRQHLPL 392

Query:   208 SDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
             +DL  AV LF+KNI DE+LP++I TMSCKLL N+VD I +K++ E
Sbjct:   393 NDLSLAVQLFAKNIDDESLPSSIQTMSCKLLLNLVDCIRSKSEQE 437

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007093 "mitotic cell cycle checkpoint" evidence=IEA

GO:0016578 "histone deubiquitination" evidence=IEA

GO:0030914 "STAGA complex" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0043968 "histone H2A acetylation" evidence=IEA

UNIPROTKB|H0Y4W2 TRRAP "Transformation/transcription domain-associated protein" [Homo sapiens (taxid:9606)]

 Score = 454 (164.9 bits), Expect = 5.1e-41, P = 5.1e-41
 Identities = 87/151 (57%), Positives = 112/151 (74%)

Query:   102 TLSFLAYLVRFYQDILNKHSQXXXXXXXXXXXXCPSEVTSMRKELLIAARHILQTDFRTN 161
             TLSFLAY++R YQ+++ K+SQ            CP+E   +RKELLIAA+HIL T+ R  
Sbjct:     2 TLSFLAYIIRIYQELVTKYSQQMVKGMLQLLSNCPAETAHLRKELLIAAKHILTTELRNQ 61

Query:   162 FVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNI 221
             F+P M +LF+E   +GSG+T  E+LRPL YSTLADLVHHVRQ LP+SDL  AV LF+KNI
Sbjct:    62 FIPCMDKLFDESILIGSGYTARETLRPLAYSTLADLVHHVRQHLPLSDLSLAVQLFAKNI 121

Query:   222 HDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
              DE+LP++I TMSCKLL N+VD I +K++ E
Sbjct:   122 DDESLPSSIQTMSCKLLLNLVDCIRSKSEQE 152

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

DICTYBASE|DDB_G0281947 tra1 "TRRAP family protein kinase Tra1" [Dictyostelium discoideum (taxid:44689)]

 Score = 405 (147.6 bits), Expect = 1.1e-35, P = 1.1e-35
 Identities = 74/217 (34%), Positives = 139/217 (64%)

Query:    32 RGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEI 91
             +  +S K + E P++++L++QLY   +  ++ +FIP+I++T++L+ P +       +   
Sbjct:   304 KSIESFKILTECPIVVILLFQLYNSYMSSNVPKFIPLIIETLSLQAPANSTVT---HHSQ 360

Query:    92 YVDFIGAQIKTLSFLAYLVRFYQDILNKHSQXXXXXXXXXXXXCPSEVTSMRKELLIAAR 151
             YVDFI AQ+KTL  LAY+++++ + + ++S             CP+  +++RKELL+  R
Sbjct:   361 YVDFIAAQVKTLYLLAYVLKWHIEQIKQYSDRFPRSVIQLLQNCPAHSSAIRKELLVTLR 420

Query:   152 HILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLI 211
             HIL +DF++ F+ ++  L +E   LG+  T++ESLR + Y +LAD +H++R  L ++ + 
Sbjct:   421 HILSSDFKSKFIVYLDLLLDEKIILGTSRTSYESLRSMAYGSLADFIHNMRNELNINQIS 480

Query:   212 KAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTK 248
             K V ++S+++HD+T P +I  MS KL+ +++D I  K
Sbjct:   481 KVVAIYSRHLHDQTNPVSIQIMSVKLIISLMDVIQRK 517

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=ISS

GO:0016573 "histone acetylation" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003712 "transcription cofactor activity" evidence=ISS

GO:0000125 "PCAF complex" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0004672 "protein kinase activity" evidence=ISS

GO:0004402 "histone acetyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y4A5	TRRAP_HUMAN	No assigned EC number	0.5625	0.8784	0.0580	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
KOG0889|consensus	3550		100.0

>KOG0889|consensus

Probab=100.00  E-value=2.5e-55  Score=481.14  Aligned_cols=187  Identities=45%  Similarity=0.777  Sum_probs=176.1

Q ss_pred             cccccc--hhHhhhhhhHHHHHHHhhhhhhHHhhHHHHHHHHHHhhcCCCCccccCChhhhHHHHHHHHHhHHHHHHHHH
Q psy9794          30 FPRGYQ--SLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLSFLA  107 (255)
Q Consensus        30 l~~~~~--SfKVL~E~Piivv~l~Q~Yk~~v~~~i~~fiPli~~~l~l~~~~q~~~~p~~n~~~y~Dfi~AQVKtlSFLa  107 (255)
                      .+++++  ||||++|||++||++||+||+++++++++|+|++++++++++|.                            
T Consensus       190 ~~p~~~~~s~kvl~e~p~iv~~~~q~yk~~i~~~i~~~~pL~~~~l~v~~~d----------------------------  241 (3550)
T KOG0889|consen  190 LLPSTYPQSFKVLAECPIIVVLLYQLYKQLIQTGIPELLPLILNFLSVRVPD----------------------------  241 (3550)
T ss_pred             cCcccccceeeeheeccHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCCCCC----------------------------
Confidence            334444  99999999999999999999999999999999999999999882                            


Q ss_pred             HHHHHhHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhccccccccccCcccccchh
Q psy9794         108 YLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLR  187 (255)
Q Consensus       108 YvlR~~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErvLiG~G~t~~EtLR  187 (255)
                                .+|+..+.+++++||.+||+|..++|||||+|||||++||||++|+|+||+|+||+||+|+|+|++|+||
T Consensus       242 ----------~~~~~~~~~~~~~ll~~CP~el~~~RkElL~a~rhilst~~k~~f~P~id~L~de~iLiG~G~t~~e~lR  311 (3550)
T KOG0889|consen  242 ----------SPYWMFLSDGTLQLLYDCPSELLSLRKELLVATRHILSTDLKRGFLPMIDKLLDERILIGTGFTAQESLR  311 (3550)
T ss_pred             ----------CccchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhHHHhccceeecCCcchhhhcc
Confidence                      0666666699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhhhhhhccCccccC
Q psy9794         188 PLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAEID  254 (255)
Q Consensus       188 pLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve~I~~~~~~~~~  254 (255)
                      |+||||||||+||||++|+++||.++|.+||+|+||++++.++|||||||++||||+|.+++.+|.+
T Consensus       312 plays~LAdllHhvR~~L~~~~i~~~i~l~s~~l~D~~l~~~iq~m~akLllNlve~i~~~~~~s~~  378 (3550)
T KOG0889|consen  312 PLAYSMLADLLHHVRESLSLTQIIKVISLFSRNLHDSSLSSGIQTMSAKLLLNLVERIEELGCQSVD  378 (3550)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence            9999999999999999999999999999999999999999999999999999999999999766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	255
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 45/260 (17%), Positives = 86/260 (33%), Gaps = 81/260 (31%)

Query: 44  PLIIVLVYQLYK------ENVKK-DLEEFIPIILKTVN-LKPPIDFVTAPEIYKEIYVDF 95
           P  + ++ +  +      +N K  + ++   II  ++N L+P          Y++++   
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--------AEYRKMFDRL 378

Query: 96  I----GAQI--KTLSFLAYLVRFY--QDILNK-HSQLLVDG----------VLNLLLLCP 136
                 A I    LS + + V       ++NK H   LV+            + L L   
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Query: 137 SE-VTSMRKELLIAARHILQTDFRTNFVP-------------HMSQ--------LFEE-- 172
            E   ++ +  ++   +I +T    + +P             H+          LF    
Sbjct: 439 LENEYALHRS-IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

Query: 173 -DF--------QLGSGWTTHESLRPLVYSTLADLV---HHVRQLLPMSD-LIKAVHLFSK 219
            DF           + W    S+      TL  L     ++    P  + L+ A+  F  
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILN----TLQQLKFYKPYICDNDPKYERLVNAILDFLP 553

Query: 220 NIHDETLPTTIHTMSCKLLR 239
              +E L   I +    LLR
Sbjct: 554 K-IEENL---ICSKYTDLLR 569

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 5e-05
 Identities = 40/278 (14%), Positives = 86/278 (30%), Gaps = 74/278 (26%)

Query: 7   RDK-FRDQSSFVKRNCSIG---FQIRIFPRGYQSLKSMQELPLIIV----------LVYQ 52
           RD+ + D   F K N S      ++R      Q+L  ++    +++          +   
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLR------QALLELRPAKNVLIDGVLGSGKTWVALD 169

Query: 53  LYKE--------------NVKK-DLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIG 97
           +                 N+K  +  E +  +L+ +  +   ++ +  +    I +    
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 98  AQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLL------CPSEVTSMRKELLIAAR 151
            Q       A L R  +    ++  L++  V N          C   +T+         R
Sbjct: 230 IQ-------AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT---------R 273

Query: 152 HILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPL---VYSTLADLVHHVRQLLPMS 208
               TDF +      + +  +        T  E    L   +     DL   V    P  
Sbjct: 274 FKQVTDFLSA--ATTTHISLDHHS--MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR- 328

Query: 209 DLIKAVHLFSKNIHDETLPTTIH---TMSCKLLRNVVD 243
                + + +++I D     T      ++C  L  +++
Sbjct: 329 ----RLSIIAESIRDG--LATWDNWKHVNCDKLTTIIE 360

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 38/285 (13%), Positives = 75/285 (26%), Gaps = 94/285 (32%)

Query: 47  IVLVYQLYKENVKKDL-----EEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIK 101
           I+ V++   +    +      ++    IL    +      + + +        F     K
Sbjct: 21  ILSVFE---DAFVDNFDCKDVQDMPKSILSKEEID---HIIMSKDAVSGTLRLFWTLLSK 74

Query: 102 TLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTD---F 158
               +    +F +++L  + + L+  +            SM   + I  R  L  D   F
Sbjct: 75  QEEMVQ---KFVEEVLRINYKFLMSPIKT-----EQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 159 RTNFVP----------HMSQLFEEDF-----QLGSG-----------------------W 180
               V            + +L           LGSG                       W
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 181 -------TTHESLRPLV---------YSTLADLVHHVRQLLPMSDLIKAV-HLFSKNIHD 223
                  +    L  L          +++ +D  H     L +  +   +  L     ++
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD--HSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 224 ETL--------PTTIHTM--SCKLL-----RNVVDFIHTKNQAEI 253
             L            +    SCK+L     + V DF+       I
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
1qgr_A	876	Protein (importin beta subunit); transport recepto	96.27
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	95.57
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	91.82
1qgr_A	876	Protein (importin beta subunit); transport recepto	91.65
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	91.36
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	87.14
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	84.99

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=96.27  E-value=0.045  Score=53.03  Aligned_cols=142  Identities=11%  Similarity=0.137  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHhH-HHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhccccccccc
Q psy9794          99 QIKTLSFLAYLVRFYQ-DILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLG  177 (255)
Q Consensus        99 QVKtlSFLaYvlR~~~-~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErvLiG  177 (255)
                      |..++..+..+.++.. +.+.+|.+.+...++++|++.... ...|.+.+.+...+... ....|.||++.++. .++-+
T Consensus       581 ~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~~-~l~~~  657 (876)
T 1qgr_A          581 QSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGS-GGVQEDALMAVSTLVEV-LGGEFLKYMEAFKP-FLGIG  657 (876)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----C-CHHHHHHHHHHHHHHHH-HGGGGGGGHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCC-CCccHHHHHHHHHHHHH-HHhhHHHHHHHHHH-HHHHH
Confidence            4556778888888887 888999999999999999876311 34688888888888764 56778899888772 22222


Q ss_pred             cCcccccchhhhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhhhh
Q psy9794         178 SGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDF  244 (255)
Q Consensus       178 ~G~t~~EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve~  244 (255)
                      -+....+.+|-.|..++.+++..+..++. ..+..++....+.+.++.....++..++..+-+++..
T Consensus       658 l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~  723 (876)
T 1qgr_A          658 LKNYAEYQVCLAAVGLVGDLCRALQSNII-PFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALA  723 (876)
T ss_dssp             HHHCTTHHHHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHH
T ss_pred             HcCcchHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHH
Confidence            22222467899999999999999887665 2355566666666665433344555565555555443

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=95.57  E-value=0.36  Score=46.59  Aligned_cols=136  Identities=10%  Similarity=0.104  Sum_probs=85.2

Q ss_pred             HhHHHHHHHHHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhcccccccc
Q psy9794          97 GAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQL  176 (255)
Q Consensus        97 ~AQVKtlSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErvLi  176 (255)
                      ..|..++.-+..+.++..+.+.+|.+.+-..++++|++..++  ..|++.+.+...+.. .....|.||++.++.- ++-
T Consensus       571 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~--~v~~~~~~~l~~l~~-~~~~~~~~~l~~i~~~-l~~  646 (861)
T 2bpt_A          571 ELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSA--FIEDDVFYAISALAA-SLGKGFEKYLETFSPY-LLK  646 (861)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGG--GTHHHHHHHHHHHHH-HHGGGGHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCC--cHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHH-HHH
Confidence            345567777888888888888999999999999999987643  678888887776654 2345566666665431 100


Q ss_pred             ccCcccccchhhhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Q psy9794         177 GSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLL  238 (255)
Q Consensus       177 G~G~t~~EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLL  238 (255)
                      +- .......|--|...+++++..+..++. ..+..++....+++.|+.....+...++..+
T Consensus       647 ~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l  706 (861)
T 2bpt_A          647 AL-NQVDSPVSITAVGFIADISNSLEEDFR-RYSDAMMNVLAQMISNPNARRELKPAVLSVF  706 (861)
T ss_dssp             HH-HCTTSHHHHHHHHHHHHHHHHTGGGGH-HHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred             Hh-ccccHHHHHHHHHHHHHHHHHhchhcc-chHHHHHHHHHHHhCCccccHhhhHHHHHHH
Confidence            00 012234777788888888888775443 3344445455555655543334444444443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=91.82  E-value=6.7  Score=38.58  Aligned_cols=134  Identities=8%  Similarity=0.078  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHhHHHhhhhH--hhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhccc---cc
Q psy9794          99 QIKTLSFLAYLVRFYQDILNKHS--QLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFE---ED  173 (255)
Q Consensus        99 QVKtlSFLaYvlR~~~~~i~~~~--~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlD---Er  173 (255)
                      ++.++..+.-+.++..+.+.+|.  +.+...++.+|++.   ....|++-..+..-+.. -+...|.||++.++.   +.
T Consensus       603 ~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~---~~~vr~~a~~~l~~l~~-~~~~~~~~~l~~~lp~l~~~  678 (852)
T 4fdd_A          603 MIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK---MPEVRQSSFALLGDLTK-ACFQHVKPCIADFMPILGTN  678 (852)
T ss_dssp             HHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCS---SHHHHHHHHHHHHHHHH-HCGGGTGGGHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCC---ChhHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Confidence            56677778888888888888885  67777777777553   36689888888877653 344567777776653   11


Q ss_pred             cccccCcccccchhhhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhh
Q psy9794         174 FQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVV  242 (255)
Q Consensus       174 vLiG~G~t~~EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLv  242 (255)
                      +  +.+  .. ..|--|--.+.++..++..++. .-+..++....+.+.++..+.+++-.++.++-.|.
T Consensus       679 l--~~~--~~-~v~~~a~~alg~i~~~~~~~~~-p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~  741 (852)
T 4fdd_A          679 L--NPE--FI-SVCNNATWAIGEISIQMGIEMQ-PYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLG  741 (852)
T ss_dssp             C--CTT--SH-HHHHHHHHHHHHHHHHHGGGGG-GGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred             c--Ccc--ch-HHHHHHHHHHHHHHHHhhHhHH-HHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHH
Confidence            1  221  12 3455566668999999977655 34566777777777788888888866665555443

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=91.65  E-value=9.2  Score=36.82  Aligned_cols=141  Identities=12%  Similarity=0.114  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhccccccccccCcc
Q psy9794         102 TLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWT  181 (255)
Q Consensus       102 tlSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErvLiG~G~t  181 (255)
                      ++..+..+.+...+.+.+|.+.+-..+++.|.+ +......|...+.+.-.+... +...|.||++.++.- ++-+-+..
T Consensus       670 a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~l~~~~~~-l~~~~~~~  746 (876)
T 1qgr_A          670 AVGLVGDLCRALQSNIIPFCDEVMQLLLENLGN-ENVHRSVKPQILSVFGDIALA-IGGEFKKYLEVVLNT-LQQASQAQ  746 (876)
T ss_dssp             HHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC-TTSCGGGHHHHHHHHHHHHHH-HGGGGGGGHHHHHHH-HHHHHTCC
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCC-ccccHHhhHHHHHHHHHHHHH-hchhHHHHHHHHHHH-HHHHHhcc
Confidence            455677777887788899999999999999875 212245888888888777641 112344555554432 11111101


Q ss_pred             c---c-------cchhhhHHHHHHHHHHHhhCCC---------CHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhh
Q psy9794         182 T---H-------ESLRPLVYSTLADLVHHVRQLL---------PMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVV  242 (255)
Q Consensus       182 ~---~-------EtLRpLAYS~lADliHhvR~~L---------s~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLv  242 (255)
                      .   -       ..+|--+...++.++..+....         -..-+..++....+..-|+.....++..+++.|-.|+
T Consensus       747 ~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~  826 (876)
T 1qgr_A          747 VDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLC  826 (876)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            0   1       1688888888888888877531         1122333333333333454446789999999988888


Q ss_pred             hhh
Q psy9794         243 DFI  245 (255)
Q Consensus       243 e~I  245 (255)
                      +.+
T Consensus       827 ~~~  829 (876)
T 1qgr_A          827 TAF  829 (876)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            776

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=91.36  E-value=11  Score=36.32  Aligned_cols=165  Identities=10%  Similarity=0.062  Sum_probs=98.3

Q ss_pred             HHhhHHHHHHHHHHhhcCCCCccccCChhhhHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCc
Q psy9794          58 VKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPS  137 (255)
Q Consensus        58 v~~~i~~fiPli~~~l~l~~~~q~~~~p~~n~~~y~Dfi~AQVKtlSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~  137 (255)
                      +.+.++.++|.++..++-..+               |  ..+..++..++.+.+...+.+.+|.+.+...+++.|.+-  
T Consensus       591 ~~~~~~~l~~~l~~~l~~~~~---------------~--~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~--  651 (861)
T 2bpt_A          591 VEPVADMLMGLFFRLLEKKDS---------------A--FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQV--  651 (861)
T ss_dssp             TGGGHHHHHHHHHHHHHSTTG---------------G--GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCT--
T ss_pred             hHHHHHHHHHHHHHHHccCCC---------------C--cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc--
Confidence            335566666666666643211               1  123446667777888888888899999999999999542  


Q ss_pred             hhhhHHHHHHHHHHHHhchhhhhcchhhhhhcccccc-ccccCcccccchhhhHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy9794         138 EVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDF-QLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHL  216 (255)
Q Consensus       138 e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErv-LiG~G~t~~EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~~  216 (255)
                       ....|+.-+.++-.+.. .....|.||++.+++-=+ .+++. ......|+-|...++++++++..++.. -+..++..
T Consensus       652 -~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~-~l~~~l~~  727 (861)
T 2bpt_A          652 -DSPVSITAVGFIADISN-SLEEDFRRYSDAMMNVLAQMISNP-NARRELKPAVLSVFGDIASNIGADFIP-YLNDIMAL  727 (861)
T ss_dssp             -TSHHHHHHHHHHHHHHH-HTGGGGHHHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHHHH-HhchhccchHHHHHHHHHHHhCCc-cccHhhhHHHHHHHHHHHHHhhhhHHH-HHHHHHHH
Confidence             23477776666655543 233567777777664210 11111 122469999999999999999877642 23333333


Q ss_pred             hhcccCCCC---------chhHHHHHHHHHHHhhhhhh
Q psy9794         217 FSKNIHDET---------LPTTIHTMSCKLLRNVVDFI  245 (255)
Q Consensus       217 fs~~lhD~s---------L~~siQ~ms~kLLlnLve~I  245 (255)
                      ..+.+....         ....++..+++.+-.+++.+
T Consensus       728 l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l  765 (861)
T 2bpt_A          728 CVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGL  765 (861)
T ss_dssp             HHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333332111         22456666666666665554

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=87.14  E-value=9.2  Score=39.29  Aligned_cols=139  Identities=16%  Similarity=0.182  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhcccccc-ccccCc
Q psy9794         102 TLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDF-QLGSGW  180 (255)
Q Consensus       102 tlSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErv-LiG~G~  180 (255)
                      ++.-++.++++..+.+.+|.+.+...++.+|++--+ ....|-+.+-+.-.++.+-=...|.||++.++.-=+ .+++. 
T Consensus       454 ~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~-  531 (1230)
T 1u6g_C          454 CFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSS-SSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP-  531 (1230)
T ss_dssp             HHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSS-CHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCS-
T ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCC-cchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHccc-
Confidence            455566666777777889999999999999987533 346788888888887653222345566655543211 11221 


Q ss_pred             ccccchhhhHHHHHHHHHHHhhC-------CCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhhhhh
Q psy9794         181 TTHESLRPLVYSTLADLVHHVRQ-------LLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFI  245 (255)
Q Consensus       181 t~~EtLRpLAYS~lADliHhvR~-------~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve~I  245 (255)
                        .-..|--|..++++++.+++.       .+. .-+...+......+.+..-...++..+++.+-.|++..
T Consensus       532 --~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~-~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~  600 (1230)
T 1u6g_C          532 --FYKITSEALLVTQQLVKVIRPLDQPSSFDAT-PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNL  600 (1230)
T ss_dssp             --SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH-HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHT
T ss_pred             --chHHHHHHHHHHHHHHHHhcCcccccccchH-HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence              113455688899999999886       332 23344444444555222233467777777776666654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=84.99  E-value=21  Score=35.03  Aligned_cols=202  Identities=9%  Similarity=0.038  Sum_probs=110.0

Q ss_pred             hHhhhhhhHHHHHHHhhhhhhHHhhHHHHHHHHHHhhcCCCCccccC------------Chhh-hHHHHHHHHHhHH---
Q psy9794          37 LKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVT------------APEI-YKEIYVDFIGAQI---  100 (255)
Q Consensus        37 fKVL~E~Piivv~l~Q~Yk~~v~~~i~~fiPli~~~l~l~~~~q~~~------------~p~~-n~~~y~Dfi~AQV---  100 (255)
                      .+|-..+--.+..+-+.....+.++++.++|.++..++-........            .+.+ +.+.+..++-.=.   
T Consensus       456 ~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~  535 (852)
T 4fdd_A          456 KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKW  535 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH
Confidence            34445555555555555555566777788887777774221100000            0011 1111222221111   


Q ss_pred             -----------HHHHHHHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCc----------h----hhhHHHHHHHHHHHHhc
Q psy9794         101 -----------KTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPS----------E----VTSMRKELLIAARHILQ  155 (255)
Q Consensus       101 -----------KtlSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~----------e----~~~~RKELLva~RHIls  155 (255)
                                 .++.-++++.+...+.+.+|.+.+-..+++++++|..          .    -...|.-.+-++..+..
T Consensus       536 ~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~  615 (852)
T 4fdd_A          536 NMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAE  615 (852)
T ss_dssp             HHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHH
Confidence                       1455666777777788889999999999999988721          0    12234433344444432


Q ss_pred             hhhhhcchhhh--hhccccccccccCcc-cccchhhhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcccCCCCchhHHHH
Q psy9794         156 TDFRTNFVPHM--SQLFEEDFQLGSGWT-THESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHT  232 (255)
Q Consensus       156 Td~R~~F~p~i--d~LlDErvLiG~G~t-~~EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~  232 (255)
                       -+...|.|++  +.+++  +++ ..+. .....|--|+.++.|+..++..++.. -+..++-...+++-++  .+++..
T Consensus       616 -~l~~~~~~~~~~~~~~~--~l~-~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~-~l~~~lp~l~~~l~~~--~~~v~~  688 (852)
T 4fdd_A          616 -GLGGNIEQLVARSNILT--LMY-QCMQDKMPEVRQSSFALLGDLTKACFQHVKP-CIADFMPILGTNLNPE--FISVCN  688 (852)
T ss_dssp             -HHGGGGHHHHHTCCHHH--HHH-HHTTCSSHHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHHHTCCTT--SHHHHH
T ss_pred             -HHhHhHHHHhcCCcHHH--HHH-HHhCCCChhHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHcCcc--chHHHH
Confidence             2334455554  33332  111 1111 23469999999999999988877664 2445566666777443  345566


Q ss_pred             HHHHHHHhhhhhh
Q psy9794         233 MSCKLLRNVVDFI  245 (255)
Q Consensus       233 ms~kLLlnLve~I  245 (255)
                      .++..+-.++..+
T Consensus       689 ~a~~alg~i~~~~  701 (852)
T 4fdd_A          689 NATWAIGEISIQM  701 (852)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	95.82
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	94.41
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	92.93
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	92.63
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	83.47

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.82  E-value=0.24  Score=44.03  Aligned_cols=177  Identities=10%  Similarity=0.099  Sum_probs=107.9

Q ss_pred             HHHHHHhhhhhhHHhhHHHHHHHHHHhhcCCCCccccCChhhhHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhHhhHH
Q psy9794          46 IIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLV  125 (255)
Q Consensus        46 ivv~l~Q~Yk~~v~~~i~~fiPli~~~l~l~~~~q~~~~p~~n~~~y~Dfi~AQVKtlSFLaYvlR~~~~~i~~~~~~i~  125 (255)
                      .+..+....+....+.+..+.|.+...+.-........   .....-...-..+..+...++.+++...+...++.+.+-
T Consensus       523 al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~  599 (861)
T d2bpta1         523 ALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQ---LTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLM  599 (861)
T ss_dssp             HHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGG---CCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            33444455555666666677777666654322211111   111111222234556778888888888888999999999


Q ss_pred             HHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhccccccccccCcccccchhhhHHHHHHHHHHHhhCCC
Q psy9794         126 DGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLL  205 (255)
Q Consensus       126 ~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErvLiG~G~t~~EtLRpLAYS~lADliHhvR~~L  205 (255)
                      +..++.+.+-++  ...|.+.+.+.-.+... +...|.||++.++.- ++-|= ....+..|-.|..++.|+..++..++
T Consensus       600 ~~l~~~l~~~~~--~~v~~~~l~~l~~l~~~-~~~~~~~~l~~i~p~-l~~~l-~~~~~~v~~~a~~~l~~i~~~~~~~~  674 (861)
T d2bpta1         600 GLFFRLLEKKDS--AFIEDDVFYAISALAAS-LGKGFEKYLETFSPY-LLKAL-NQVDSPVSITAVGFIADISNSLEEDF  674 (861)
T ss_dssp             HHHHHHHHSTTG--GGTHHHHHHHHHHHHHH-HGGGGHHHHHHHHHH-HHHHH-HCTTSHHHHHHHHHHHHHHHHTGGGG
T ss_pred             HHHhhhcccCCc--hhHHHHHHHHHHHHHHH-hhHHHHHHHHHHhhH-HHHHh-CCCCHHHHHHHHHHHHHHHHHhHHHh
Confidence            999999987654  45677888887766543 456677777766531 11111 11235688889999999998888776


Q ss_pred             CHHHHHHHHHHhhcccCCCCchhHHH
Q psy9794         206 PMSDLIKAVHLFSKNIHDETLPTTIH  231 (255)
Q Consensus       206 s~~qi~~~v~~fs~~lhD~sL~~siQ  231 (255)
                      . +-+...+....+.+.|++....+.
T Consensus       675 ~-~~~~~i~~~L~~~l~~~~~~~~~k  699 (861)
T d2bpta1         675 R-RYSDAMMNVLAQMISNPNARRELK  699 (861)
T ss_dssp             H-HHHHHHHHHHHHHHHCTTCCTTHH
T ss_pred             H-hhHHHHHHHHHHHhCCCCCCHHHH
Confidence            4 334445555555666665544443

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.41  E-value=0.71  Score=40.82  Aligned_cols=100  Identities=12%  Similarity=0.091  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhcccccc-ccccCc
Q psy9794         102 TLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDF-QLGSGW  180 (255)
Q Consensus       102 tlSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErv-LiG~G~  180 (255)
                      ++..++.+.+...+...+|.+.+...++..|++..++   .|+.-+.+.-.+ ....+..+.||++.+++.=+ .++. .
T Consensus       618 ~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~---v~~~a~~~l~~i-~~~~~~~~~~~~~~i~~~L~~~l~~-~  692 (861)
T d2bpta1         618 VFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSP---VSITAVGFIADI-SNSLEEDFRRYSDAMMNVLAQMISN-P  692 (861)
T ss_dssp             HHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSH---HHHHHHHHHHHH-HHHTGGGGHHHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHH---HHHHHHHHHHHH-HHHhHHHhHhhHHHHHHHHHHHhCC-C
Confidence            4556677778888888999999999999999886544   444444333332 23445667788877766421 1222 3


Q ss_pred             ccccchhhhHHHHHHHHHHHhhCCCC
Q psy9794         181 TTHESLRPLVYSTLADLVHHVRQLLP  206 (255)
Q Consensus       181 t~~EtLRpLAYS~lADliHhvR~~Ls  206 (255)
                      +....+|+-+.+++.|++..+...+.
T Consensus       693 ~~~~~~k~~~~~~l~~i~~~~~~~~~  718 (861)
T d2bpta1         693 NARRELKPAVLSVFGDIASNIGADFI  718 (861)
T ss_dssp             TCCTTHHHHHHHHHHHHHHHHGGGGH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44557999999999999999998764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.93  E-value=2.8  Score=37.09  Aligned_cols=123  Identities=13%  Similarity=0.136  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhcccccc-ccccC
Q psy9794         101 KTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDF-QLGSG  179 (255)
Q Consensus       101 KtlSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErv-LiG~G  179 (255)
                      .++.-++.+.+...+...+|.+.+...+++.|++.-+  ...|+..+....-+ .......|.||++.+++.=+ .++..
T Consensus       627 ~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~--~~v~~~a~~~l~~l-~~~~~~~~~~~~~~i~~~l~~~l~~~  703 (876)
T d1qgra_         627 DALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAE--YQVCLAAVGLVGDL-CRALQSNIIPFCDEVMQLLLENLGNE  703 (876)
T ss_dssp             HHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHH-HHHHGGGGHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHH-HHHhHHhhhhhHHHHHHHHHHHhCCc
Confidence            3455566667777888899999999999999987642  24566555444433 34456778888888776532 12332


Q ss_pred             cccccchhhhHHHHHHHHHHHhhCCCC--HHHHHHHHHHhhcccCCCCch
Q psy9794         180 WTTHESLRPLVYSTLADLVHHVRQLLP--MSDLIKAVHLFSKNIHDETLP  227 (255)
Q Consensus       180 ~t~~EtLRpLAYS~lADliHhvR~~Ls--~~qi~~~v~~fs~~lhD~sL~  227 (255)
                       ...+.+|+-+.+.++|++.++..+..  ++++...+.-.++.-+|+...
T Consensus       704 -~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~  752 (876)
T d1qgra_         704 -NVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDY  752 (876)
T ss_dssp             -TSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCH
T ss_pred             -cCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccch
Confidence             33456999999999999999987654  244444444444555565543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=1.1  Score=39.83  Aligned_cols=128  Identities=12%  Similarity=0.139  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHh-HHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhccccccccc
Q psy9794          99 QIKTLSFLAYLVRFY-QDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLG  177 (255)
Q Consensus        99 QVKtlSFLaYvlR~~-~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErvLiG  177 (255)
                      |....+.+.-+.+.. .+...++.+.+-..++++++.+.++ ...|.+.+.+...+.. -+...|.||++.+++. ++-|
T Consensus       581 ~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~-~~~~~~~l~~l~~l~~-~~~~~~~~~l~~ii~~-l~~~  657 (876)
T d1qgra_         581 QSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGS-GGVQEDALMAVSTLVE-VLGGEFLKYMEAFKPF-LGIG  657 (876)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----C-CHHHHHHHHHHHHHHH-HHGGGGGGGHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHHHHH-HcchhhHHHHHHHHHH-HHHH
Confidence            334444455555443 3456677788888999999988765 5567788888776553 4456788888877743 3322


Q ss_pred             cCcccccchhhhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcccCCCCchhHH
Q psy9794         178 SGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTI  230 (255)
Q Consensus       178 ~G~t~~EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~si  230 (255)
                      -.-......|-.|+.++.|+..+....+.+ .+...+....+++-|+.....+
T Consensus       658 l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~~  709 (876)
T d1qgra_         658 LKNYAEYQVCLAAVGLVGDLCRALQSNIIP-FCDEVMQLLLENLGNENVHRSV  709 (876)
T ss_dssp             HHHCTTHHHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHHHHTCTTSCGGG
T ss_pred             HhCCCcHHHHHHHHHHHHHHHHHhHHhhhh-hHHHHHHHHHHHhCCccCCHHH
Confidence            222222347888999999999888877653 4555566666677666654443

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.47  E-value=4.3  Score=38.03  Aligned_cols=135  Identities=13%  Similarity=0.102  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhcccccccccc
Q psy9794          99 QIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGS  178 (255)
Q Consensus        99 QVKtlSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErvLiG~  178 (255)
                      +.+++..++.++....+.+.++.+.+...++..+++     ...|..-+-+...+.....+..+-|++..++++  +.+.
T Consensus       583 ~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~-----~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~--l~~~  655 (1207)
T d1u6gc_         583 KERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKN-----EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPI--LASF  655 (1207)
T ss_dssp             HHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS-----SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHH--HHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcc-----hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHH--HHHh
Confidence            445677778888777777777666555555555543     224666666677777777777788888877754  3333


Q ss_pred             CcccccchhhhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhh
Q psy9794         179 GWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVV  242 (255)
Q Consensus       179 G~t~~EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLv  242 (255)
                      -....+.+|--+...+..++.+....++...+..++......+.|+...  ++..+..++-.+.
T Consensus       656 l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~--v~~~~l~~l~~l~  717 (1207)
T d1u6gc_         656 LRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMH--VSQMAISFLTTLA  717 (1207)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHH--HHHHHHHHHHHHT
T ss_pred             cccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhccccccccHH--HHHHHHHHHHHHH
Confidence            3456678999999999999999999999999998888888878777643  4445555555444