Psyllid ID: psy9815

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF
Secondary Structure (PSIPRED)
cccccccccccccEEEEEcccccHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHcccccEEEEccccccccccccccccccEEEcccccccccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHccHHHccHHHHHHHHccEEEEEccccccccccHHHHHHHHHHHHHccccEEEEcccccHHHHHccEEcEEEEEccccccccccHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
ahpdwkdsdiIANLVGYCSDQAHSSVERAGLLggvtirglpaddsyKLRGDALEAAIEEDlkkgkipfyvnqahSSVERAGLlggvtirglpaddsyKLRGDALEAAIEEDLKKGKIPF
Flexible Loop (DISEMBL)
AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAieedlkkgkipf
Low Complexity Region (SEG)
AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF
Disordered region (IsUnstruct)
********DIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKL********************
Disordered Region (DISOPRED)
*HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF
Disordered Region (DISEMBL)
AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF
Disordered Region (DISPRO)
**PDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
O96571	403	Aromatic-L-amino-acid dec	N/A	N/A	0.571	0.168	0.691	2e-22
P48861	508	Aromatic-L-amino-acid dec	N/A	N/A	0.571	0.133	0.623	1e-21
O96567	510	Aromatic-L-amino-acid dec	N/A	N/A	0.563	0.131	0.617	2e-19
P05031	510	Aromatic-L-amino-acid dec	yes	N/A	0.563	0.131	0.602	4e-19
Q05733	847	Histidine decarboxylase O	no	N/A	0.579	0.081	0.550	5e-17
P23738	662	Histidine decarboxylase O	yes	N/A	0.571	0.102	0.573	2e-16
P16453	656	Histidine decarboxylase O	yes	N/A	0.588	0.106	0.549	2e-15
P19113	662	Histidine decarboxylase O	yes	N/A	0.554	0.099	0.528	2e-15
P14173	480	Aromatic-L-amino-acid dec	no	N/A	0.554	0.137	0.514	3e-15
O88533	480	Aromatic-L-amino-acid dec	no	N/A	0.554	0.137	0.485	5e-15

>sp|O96571|DDC_DROLE Aromatic-L-amino-acid decarboxylase (Fragment) OS=Drosophila lebanonensis GN=Ddc PE=3 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/68 (69%), Positives = 54/68 (79%)

Query: 2   HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
           HPDW D  II+ LVGY S QAHSSVERAGLLGGV +R +PAD+  +LRG+ALE AIE+DL
Sbjct: 97  HPDWDDHTIISKLVGYSSAQAHSSVERAGLLGGVKLRSVPADEQNRLRGEALEKAIEQDL 156

Query: 62  KKGKIPFY 69
             G IPFY
Sbjct: 157 ADGLIPFY 164

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.
Drosophila lebanonensis (taxid: 7225)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 8

>sp|P48861|DDC_MANSE Aromatic-L-amino-acid decarboxylase OS=Manduca sexta GN=Ddc PE=2 SV=1

 Score =  102 bits (253), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 53/69 (76%)

Query: 2   HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
           HP+W ++DI+  LVGYC+ QAHSSVERAGLLGGV +R L  D   +LRGD L  AI+ED+
Sbjct: 171 HPEWTETDILGKLVGYCNQQAHSSVERAGLLGGVKLRSLKPDSKRRLRGDTLREAIDEDI 230

Query: 62  KKGKIPFYV 70
           + G IPFYV
Sbjct: 231 RNGLIPFYV 239

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.

Manduca sexta (taxid: 7130)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|O96567|DDC_DROSI Aromatic-L-amino-acid decarboxylase OS=Drosophila simulans GN=Ddc PE=3 SV=2

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/68 (61%), Positives = 55/68 (80%), Gaps = 1/68 (1%)

Query: 2   HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
           HP+W +  I+  LVGYCSDQAHSSVERAGLLGGV +R + +++ +++RG ALE AIE+DL
Sbjct: 206 HPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSEN-HRMRGAALEKAIEQDL 264

Query: 62  KKGKIPFY 69
            +G IPFY
Sbjct: 265 AEGLIPFY 272

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Variation in the synthesis of bioamines may be a factor contributing to natural variation in individual life span.

Drosophila simulans (taxid: 7240)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|P05031|DDC_DROME Aromatic-L-amino-acid decarboxylase OS=Drosophila melanogaster GN=Ddc PE=1 SV=4

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/68 (60%), Positives = 55/68 (80%), Gaps = 1/68 (1%)

Query: 2   HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
           HP+W +  I+  LVGYCSDQAHSSVERAGLLGGV +R + +++ +++RG ALE AIE+D+
Sbjct: 206 HPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSEN-HRMRGAALEKAIEQDV 264

Query: 62  KKGKIPFY 69
            +G IPFY
Sbjct: 265 AEGLIPFY 272

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Variation in the synthesis of bioamines may be a factor contributing to natural variation in life span.

Drosophila melanogaster (taxid: 7227)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|Q05733|DCHS_DROME Histidine decarboxylase OS=Drosophila melanogaster GN=Hdc PE=2 SV=2

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 52/69 (75%)

Query: 2   HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
           HP ++D++I A LV YCSDQAHSSVE+A L+G V +R + ADD   +RG  L  AIE+D+
Sbjct: 172 HPGYQDAEINARLVAYCSDQAHSSVEKAALIGLVRMRYIEADDDLAMRGKLLREAIEDDI 231

Query: 62  KKGKIPFYV 70
           K+G +PF+V
Sbjct: 232 KQGLVPFWV 240

Required in photoreceptor transmitter synthesis.

Drosophila melanogaster (taxid: 7227)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P23738|DCHS_MOUSE Histidine decarboxylase OS=Mus musculus GN=Hdc PE=1 SV=2

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 51/68 (75%)

Query: 3   PDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLK 62
           PD  +S + A LV Y SDQAHSSVE+AGL+  V IR LP DD++ LRG+AL+ AIEED +
Sbjct: 181 PDANESSLNARLVAYTSDQAHSSVEKAGLISLVKIRFLPVDDNFSLRGEALQKAIEEDKQ 240

Query: 63  KGKIPFYV 70
           +G +P +V
Sbjct: 241 QGLVPVFV 248

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P16453|DCHS_RAT Histidine decarboxylase OS=Rattus norvegicus GN=Hdc PE=2 SV=2

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/71 (54%), Positives = 53/71 (74%), Gaps = 1/71 (1%)

Query: 1   AH-PDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59
           AH P+  +S + A LV Y SDQAHSSVE+AGL+  V I+ LP DD++ LRG+AL+ AIEE
Sbjct: 174 AHEPNADESSLNARLVAYASDQAHSSVEKAGLISLVKIKFLPVDDNFSLRGEALQKAIEE 233

Query: 60  DLKKGKIPFYV 70
           D ++G +P +V
Sbjct: 234 DKQQGLVPVFV 244

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P19113|DCHS_HUMAN Histidine decarboxylase OS=Homo sapiens GN=HDC PE=1 SV=2

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/70 (52%), Positives = 52/70 (74%)

Query: 1   AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
           + PD  +S + A LV Y SDQAHSSVE+AGL+  V ++ LP DD++ LRG+AL+ AIEED
Sbjct: 172 SEPDADESCLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEED 231

Query: 61  LKKGKIPFYV 70
            ++G +P +V
Sbjct: 232 KQRGLVPVFV 241

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P14173|DDC_RAT Aromatic-L-amino-acid decarboxylase OS=Rattus norvegicus GN=Ddc PE=1 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 48/70 (68%)

Query: 1   AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
           A P+   + ++  LV Y SDQAHSSVERAGL+GGV I+ +P+D +Y +R  AL  A+E D
Sbjct: 170 ASPELTQAALMEKLVAYTSDQAHSSVERAGLIGGVKIKAIPSDGNYSMRAAALREALERD 229

Query: 61  LKKGKIPFYV 70
              G IPF+V
Sbjct: 230 KAAGLIPFFV 239

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|O88533|DDC_MOUSE Aromatic-L-amino-acid decarboxylase OS=Mus musculus GN=Ddc PE=2 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 49/70 (70%)

Query: 1   AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
           A P++  + I+  LV Y SDQAHSSVERAGL+GG+ ++ +P+D ++ +R  AL  A+E D
Sbjct: 170 ASPEFTQAAIMEKLVAYTSDQAHSSVERAGLIGGIKLKAVPSDGNFSMRASALREALERD 229

Query: 61  LKKGKIPFYV 70
              G IPF+V
Sbjct: 230 KAAGLIPFFV 239

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
440204277	427	dopa decarboxylase, partial [Friseria co	0.579	0.161	0.724	5e-23
440204005	427	dopa decarboxylase, partial [Mompha ceph	0.579	0.161	0.724	1e-22
440203767	244	dopa decarboxylase, partial [Ectoedemia	0.579	0.282	0.710	1e-22
158451477	436	putative dopa decarboxylase protein [Lac	0.579	0.158	0.695	4e-22
343410190	236	dopa decarboxylase [Gracillariidae gen.	0.571	0.288	0.720	7e-22
440203451	427	dopa decarboxylase, partial [Bathroxena	0.579	0.161	0.666	8e-22
158451497	434	putative dopa decarboxylase protein [Mac	0.579	0.158	0.652	9e-22
440203575	427	dopa decarboxylase, partial [Chilo suppr	0.579	0.161	0.681	9e-22
440203685	427	dopa decarboxylase, partial [Eadmuna sp.	0.579	0.161	0.666	1e-21
440203403	427	dopa decarboxylase, partial [Auratonota	0.579	0.161	0.681	1e-21

>gi|440204277|gb|AGB87945.1| dopa decarboxylase, partial [Friseria cockerelli]

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 2   HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
           HP+W ++DI+A LVGYCS QAHSSVERAGLLGGVT+RG+  D   +LRGD L  AIEEDL
Sbjct: 142 HPEWSETDILAKLVGYCSKQAHSSVERAGLLGGVTLRGVKPDSKRQLRGDLLREAIEEDL 201

Query: 62  KKGKIPFYV 70
           KKG IPFYV
Sbjct: 202 KKGLIPFYV 210

Source: Friseria cockerelli

Species: Friseria cockerelli

Genus: Friseria

Family: Gelechiidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|440204005|gb|AGB87809.1| dopa decarboxylase, partial [Mompha cephalonthiella]

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/69 (72%), Positives = 55/69 (79%)

Query: 2   HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
           HPDWKD+DI+  LVGYC+ QAHSSVERAGLLGGV +R L  D   +LRGD L  AIEEDL
Sbjct: 142 HPDWKDTDILDKLVGYCNKQAHSSVERAGLLGGVKLRSLKPDGKRRLRGDILREAIEEDL 201

Query: 62  KKGKIPFYV 70
           KKG IPFYV
Sbjct: 202 KKGLIPFYV 210

Source: Mompha cephalonthiella

Species: Mompha cephalonthiella

Genus: Mompha

Family: Momphidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|440203767|gb|AGB87690.1| dopa decarboxylase, partial [Ectoedemia hypericella]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 58/69 (84%)

Query: 2   HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
           HPDWK++++IANLVGYCS+QAHSSVERAGLLGGVT+R L  D+  KLRGB L  AI ED 
Sbjct: 65  HPDWKEANVIANLVGYCSEQAHSSVERAGLLGGVTLRQLKTDERRKLRGBTLREAIREDR 124

Query: 62  KKGKIPFYV 70
           +KG IPFYV
Sbjct: 125 EKGLIPFYV 133

Source: Ectoedemia hypericella

Species: Ectoedemia hypericella

Genus: Ectoedemia

Family: Nepticulidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158451477|gb|ABW39099.1| putative dopa decarboxylase protein [Lacosoma chiridota]

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/69 (69%), Positives = 55/69 (79%)

Query: 2   HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
           HP+W D+DI+A LVGYC+ QAHSSVERAGLLGGV +R L  DD  +LRGD L  A+EEDL
Sbjct: 151 HPEWSDTDILAKLVGYCNKQAHSSVERAGLLGGVKLRSLKPDDKRRLRGDILREAMEEDL 210

Query: 62  KKGKIPFYV 70
           K G IPFYV
Sbjct: 211 KNGLIPFYV 219

Source: Lacosoma chiridota

Species: Lacosoma chiridota

Genus: Lacosoma

Family: Mimallonidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|343410190|gb|AEM24228.1| dopa decarboxylase [Gracillariidae gen. 1 sp. ex Schinus terebinthifolius]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 57/68 (83%)

Query: 2   HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
           HP+W DS+I A LVGYC+ QAHSSVERAGLLGGVT+R +  D  ++LRGDALE AIEEDL
Sbjct: 65  HPEWTDSEITAKLVGYCNKQAHSSVERAGLLGGVTLRTIRPDSKHRLRGDALEEAIEEDL 124

Query: 62  KKGKIPFY 69
           KKG IPF+
Sbjct: 125 KKGLIPFF 132

Source: Gracillariidae gen. 1 sp. ex Schinus terebinthifolius

Species: Gracillariidae gen. 1 sp. ex Schinus terebinthifolius

Family: Gracillariidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|440203451|gb|AGB87532.1| dopa decarboxylase, partial [Bathroxena heteropalpella]

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 46/69 (66%), Positives = 56/69 (81%)

Query: 2   HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
           HP+W D+DI++ LV YCS QAHSSVERAGLLGGV +R LP D+ ++LRG+AL   IEED+
Sbjct: 142 HPEWTDADIVSKLVAYCSKQAHSSVERAGLLGGVQMRLLPTDERHRLRGEALRIKIEEDI 201

Query: 62  KKGKIPFYV 70
           K G IPFYV
Sbjct: 202 KNGLIPFYV 210

Source: Bathroxena heteropalpella

Species: Bathroxena heteropalpella

Genus: Bathroxena

Family: Tineidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158451497|gb|ABW39109.1| putative dopa decarboxylase protein [Macrothylacia rubi]

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/69 (65%), Positives = 58/69 (84%)

Query: 2   HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
           HP+W ++DI++ LVGYC+ QAHSSVERAGLLGG+T+R L  D+  +LRGD L+ A+EED+
Sbjct: 149 HPEWSETDILSKLVGYCNKQAHSSVERAGLLGGITLRSLLPDNKRRLRGDTLKKAMEEDI 208

Query: 62  KKGKIPFYV 70
           KKG IPFYV
Sbjct: 209 KKGLIPFYV 217

Source: Macrothylacia rubi

Species: Macrothylacia rubi

Genus: Macrothylacia

Family: Lasiocampidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|440203575|gb|AGB87594.1| dopa decarboxylase, partial [Chilo suppressalis]

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 47/69 (68%), Positives = 56/69 (81%)

Query: 2   HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
           HPDW D+ I++ LVGYC+ QAHSSVERAGLLGGV +R L  D+ ++LRGD L+ AIEEDL
Sbjct: 142 HPDWTDTQILSKLVGYCNKQAHSSVERAGLLGGVKLRTLRPDNKHRLRGDTLKDAIEEDL 201

Query: 62  KKGKIPFYV 70
           K G IPFYV
Sbjct: 202 KNGLIPFYV 210

Source: Chilo suppressalis

Species: Chilo suppressalis

Genus: Chilo

Family: Crambidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|440203685|gb|AGB87649.1| dopa decarboxylase, partial [Eadmuna sp. Janzen01]

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/69 (66%), Positives = 55/69 (79%)

Query: 2   HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
           HP+W D+DI+A LVGYC+ QAHSSVERAGLLGGV +R L  DD  +LRGD L  A+EED+
Sbjct: 142 HPEWSDTDILAKLVGYCNKQAHSSVERAGLLGGVKLRSLKPDDKRRLRGDILREAMEEDI 201

Query: 62  KKGKIPFYV 70
           + G IPFYV
Sbjct: 202 RNGLIPFYV 210

Source: Eadmuna sp. Janzen01

Species: Eadmuna sp. Janzen01

Genus: Eadmuna

Family: Mimallonidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|440203403|gb|AGB87508.1| dopa decarboxylase, partial [Auratonota dispersa]

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/69 (68%), Positives = 56/69 (81%)

Query: 2   HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
           HP+WKD+DI+A LVGYC+ QAHSSVERAGLLGGV +R L  D+  +LRGD L  AIEED+
Sbjct: 142 HPEWKDNDILAKLVGYCNKQAHSSVERAGLLGGVRLRTLKPDNKRRLRGDILREAIEEDI 201

Query: 62  KKGKIPFYV 70
           + G IPFYV
Sbjct: 202 RNGLIPFYV 210

Source: Auratonota dispersa

Species: Auratonota dispersa

Genus: Auratonota

Family: Tortricidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
FB|FBgn0000422	510	Ddc "Dopa decarboxylase" [Dros	0.563	0.131	0.602	8.4e-18
ZFIN|ZDB-GENE-040426-2656	480	ddc "dopa decarboxylase" [Dani	0.571	0.141	0.573	1.5e-16
FB|FBgn0005619	847	Hdc "Histidine decarboxylase"	0.579	0.081	0.550	5.6e-16
RGD|2790	656	Hdc "histidine decarboxylase"	0.588	0.106	0.549	4.8e-15
MGI|MGI:96062	662	Hdc "histidine decarboxylase"	0.571	0.102	0.573	1.2e-14
UNIPROTKB|F8WER1	229	DDC "Aromatic-L-amino-acid dec	0.588	0.305	0.485	3.8e-14
UNIPROTKB|B7ZM01	629	HDC "HDC protein" [Homo sapien	0.588	0.111	0.528	6e-14
UNIPROTKB|P19113	662	HDC "Histidine decarboxylase"	0.588	0.105	0.528	6.6e-14
RGD|2494	480	Ddc "dopa decarboxylase (aroma	0.588	0.145	0.514	9.8e-14
UNIPROTKB|E7ER62	338	DDC "Aromatic-L-amino-acid dec	0.588	0.207	0.485	1e-13

FB|FBgn0000422 Ddc "Dopa decarboxylase" [Drosophila melanogaster (taxid:7227)]

 Score = 224 (83.9 bits), Expect = 8.4e-18, P = 8.4e-18
 Identities = 41/68 (60%), Positives = 55/68 (80%)

Query:     2 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
             HP+W +  I+  LVGYCSDQAHSSVERAGLLGGV +R + +++ +++RG ALE AIE+D+
Sbjct:   206 HPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSEN-HRMRGAALEKAIEQDV 264

Query:    62 KKGKIPFY 69
              +G IPFY
Sbjct:   265 AEGLIPFY 272

GO:0006585 "dopamine biosynthetic process from tyrosine" evidence=IMP

GO:0006587 "serotonin biosynthetic process from tryptophan" evidence=IMP

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=NAS;IMP;TAS

GO:0007611 "learning or memory" evidence=NAS

GO:0006584 "catecholamine metabolic process" evidence=NAS

GO:0008062 "eclosion rhythm" evidence=NAS

GO:0007619 "courtship behavior" evidence=NAS

GO:0048066 "developmental pigmentation" evidence=TAS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0009611 "response to wounding" evidence=IEP

GO:0040040 "thermosensory behavior" evidence=IMP

GO:0043052 "thermotaxis" evidence=IMP

GO:0007615 "anesthesia-resistant memory" evidence=IDA

GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IGI;IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0048085 "adult chitin-containing cuticle pigmentation" evidence=IMP

GO:0007616 "long-term memory" evidence=IGI

ZFIN|ZDB-GENE-040426-2656 ddc "dopa decarboxylase" [Danio rerio (taxid:7955)]

 Score = 212 (79.7 bits), Expect = 1.5e-16, P = 1.5e-16
 Identities = 39/68 (57%), Positives = 51/68 (75%)

Query:     2 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
             HPD  ++DII+ LV Y SDQAHSSVERAGL+GGV ++ +P D  + +RGDALE  ++ED 
Sbjct:   171 HPDRSETDIISKLVAYSSDQAHSSVERAGLIGGVRMKKIPTDSKFSVRGDALERILKEDK 230

Query:    62 KKGKIPFY 69
               G IPF+
Sbjct:   231 AAGLIPFF 238

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016829 "lyase activity" evidence=IEA

FB|FBgn0005619 Hdc "Histidine decarboxylase" [Drosophila melanogaster (taxid:7227)]

 Score = 203 (76.5 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
 Identities = 38/69 (55%), Positives = 52/69 (75%)

Query:     2 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
             HP ++D++I A LV YCSDQAHSSVE+A L+G V +R + ADD   +RG  L  AIE+D+
Sbjct:   172 HPGYQDAEINARLVAYCSDQAHSSVEKAALIGLVRMRYIEADDDLAMRGKLLREAIEDDI 231

Query:    62 KKGKIPFYV 70
             K+G +PF+V
Sbjct:   232 KQGLVPFWV 240

GO:0004398 "histidine decarboxylase activity" evidence=ISS;NAS;IMP

GO:0042051 "compound eye photoreceptor development" evidence=NAS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0043052 "thermotaxis" evidence=IMP

RGD|2790 Hdc "histidine decarboxylase" [Rattus norvegicus (taxid:10116)]

 Score = 192 (72.6 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
 Identities = 39/71 (54%), Positives = 53/71 (74%)

Query:     1 AH-PDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59
             AH P+  +S + A LV Y SDQAHSSVE+AGL+  V I+ LP DD++ LRG+AL+ AIEE
Sbjct:   174 AHEPNADESSLNARLVAYASDQAHSSVEKAGLISLVKIKFLPVDDNFSLRGEALQKAIEE 233

Query:    60 DLKKGKIPFYV 70
             D ++G +P +V
Sbjct:   234 DKQQGLVPVFV 244

GO:0001692 "histamine metabolic process" evidence=IDA

GO:0001694 "histamine biosynthetic process" evidence=IEA;ISO

GO:0004398 "histidine decarboxylase activity" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0006547 "histidine metabolic process" evidence=IDA

GO:0006548 "histidine catabolic process" evidence=ISO

GO:0016597 "amino acid binding" evidence=IDA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA;IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042423 "catecholamine biosynthetic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=RCA

GO:0043025 "neuronal cell body" evidence=IDA

MGI|MGI:96062 Hdc "histidine decarboxylase" [Mus musculus (taxid:10090)]

 Score = 197 (74.4 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 39/68 (57%), Positives = 51/68 (75%)

Query:     3 PDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLK 62
             PD  +S + A LV Y SDQAHSSVE+AGL+  V IR LP DD++ LRG+AL+ AIEED +
Sbjct:   181 PDANESSLNARLVAYTSDQAHSSVEKAGLISLVKIRFLPVDDNFSLRGEALQKAIEEDKQ 240

Query:    63 KGKIPFYV 70
             +G +P +V
Sbjct:   241 QGLVPVFV 248

GO:0001692 "histamine metabolic process" evidence=ISO

GO:0001694 "histamine biosynthetic process" evidence=ISO;IMP

GO:0003824 "catalytic activity" evidence=IEA

GO:0004398 "histidine decarboxylase activity" evidence=ISO;IMP;TAS

GO:0005829 "cytosol" evidence=ISO

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0006547 "histidine metabolic process" evidence=ISO

GO:0006548 "histidine catabolic process" evidence=ISO;IMP;TAS

GO:0016597 "amino acid binding" evidence=ISO

GO:0016829 "lyase activity" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0042423 "catecholamine biosynthetic process" evidence=IEA

GO:0043025 "neuronal cell body" evidence=ISO

UNIPROTKB|F8WER1 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 34/70 (48%), Positives = 49/70 (70%)

Query:     1 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
             A P+   + I+  LV Y SDQAHSSVERAGL+GGV ++ +P+D ++ +R  AL+ A+E D
Sbjct:   132 ASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERD 191

Query:    61 LKKGKIPFYV 70
                G IPF++
Sbjct:   192 KAAGLIPFFM 201

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|B7ZM01 HDC "HDC protein" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 6.0e-14, P = 6.0e-14
 Identities = 37/70 (52%), Positives = 52/70 (74%)

Query:     1 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
             + PD  +S + A LV Y SDQAHSSVE+AGL+  V ++ LP DD++ LRG+AL+ AIEED
Sbjct:   172 SEPDADESCLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEED 231

Query:    61 LKKGKIPFYV 70
              ++G +P +V
Sbjct:   232 KQRGLVPVFV 241

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|P19113 HDC "Histidine decarboxylase" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 6.6e-14, P = 6.6e-14
 Identities = 37/70 (52%), Positives = 52/70 (74%)

Query:     1 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
             + PD  +S + A LV Y SDQAHSSVE+AGL+  V ++ LP DD++ LRG+AL+ AIEED
Sbjct:   172 SEPDADESCLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEED 231

Query:    61 LKKGKIPFYV 70
              ++G +P +V
Sbjct:   232 KQRGLVPVFV 241

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042423 "catecholamine biosynthetic process" evidence=IEA

GO:0001694 "histamine biosynthetic process" evidence=IEA;IDA

GO:0006548 "histidine catabolic process" evidence=IDA;TAS

GO:0004398 "histidine decarboxylase activity" evidence=IDA;TAS

GO:0006547 "histidine metabolic process" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

RGD|2494 Ddc "dopa decarboxylase (aromatic L-amino acid decarboxylase)" [Rattus norvegicus (taxid:10116)]

 Score = 186 (70.5 bits), Expect = 9.8e-14, P = 9.8e-14
 Identities = 36/70 (51%), Positives = 48/70 (68%)

Query:     1 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
             A P+   + ++  LV Y SDQAHSSVERAGL+GGV I+ +P+D +Y +R  AL  A+E D
Sbjct:   170 ASPELTQAALMEKLVAYTSDQAHSSVERAGLIGGVKIKAIPSDGNYSMRAAALREALERD 229

Query:    61 LKKGKIPFYV 70
                G IPF+V
Sbjct:   230 KAAGLIPFFV 239

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0009636 "response to toxic substance" evidence=ISO

GO:0010259 "multicellular organismal aging" evidence=IEP

GO:0015842 "synaptic vesicle amine transport" evidence=IDA

GO:0016597 "amino acid binding" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0030170 "pyridoxal phosphate binding" evidence=IDA;TAS

GO:0030424 "axon" evidence=IDA

GO:0033076 "isoquinoline alkaloid metabolic process" evidence=IEP

GO:0035690 "cellular response to drug" evidence=IEP

GO:0042416 "dopamine biosynthetic process" evidence=IEA;IDA

GO:0042417 "dopamine metabolic process" evidence=TAS

GO:0042423 "catecholamine biosynthetic process" evidence=TAS

GO:0042427 "serotonin biosynthetic process" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0046684 "response to pyrethroid" evidence=IEP

GO:0052314 "phytoalexin metabolic process" evidence=IEP

GO:0071312 "cellular response to alkaloid" evidence=IEP

GO:0071363 "cellular response to growth factor stimulus" evidence=IEP

UNIPROTKB|E7ER62 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/70 (48%), Positives = 49/70 (70%)

Query:     1 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
             A P+   + I+  LV Y SDQAHSSVERAGL+GGV ++ +P+D ++ +R  AL+ A+E D
Sbjct:   170 ASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERD 229

Query:    61 LKKGKIPFYV 70
                G IPF++
Sbjct:   230 KAAGLIPFFM 239

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P23738	DCHS_MOUSE	4, ., 1, ., 1, ., 2, 2	0.5735	0.5714	0.1027	yes	N/A
P16453	DCHS_RAT	4, ., 1, ., 1, ., 2, 2	0.5492	0.5882	0.1067	yes	N/A
P19113	DCHS_HUMAN	4, ., 1, ., 1, ., 2, 2	0.5285	0.5546	0.0996	yes	N/A
P05031	DDC_DROME	4, ., 1, ., 1, ., 2, 8	0.6029	0.5630	0.1313	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	119
pfam00282	373	pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca	2e-21
cd06450	345	cd06450, DOPA_deC_like, DOPA decarboxylase family	1e-16
pfam00282	373	pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca	1e-13
cd06450	345	cd06450, DOPA_deC_like, DOPA decarboxylase family	6e-11
PLN02590	539	PLN02590, PLN02590, probable tyrosine decarboxylas	3e-09
PLN02880	490	PLN02880, PLN02880, tyrosine decarboxylase	5e-08
PLN02590	539	PLN02590, PLN02590, probable tyrosine decarboxylas	5e-05
COG0076	460	COG0076, GadB, Glutamate decarboxylase and related	1e-04
PLN02880	490	PLN02880, PLN02880, tyrosine decarboxylase	2e-04

>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain

 Score = 86.7 bits (215), Expect = 2e-21
 Identities = 33/66 (50%), Positives = 44/66 (66%)

Query: 6   KDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGK 65
                +  LV Y SDQAHSS+E+A L+ GV +R +P D++ K+RG  LE AIEED + G 
Sbjct: 134 AGKPSLGKLVAYTSDQAHSSIEKAALIAGVELREIPTDENGKMRGMDLEKAIEEDKENGL 193

Query: 66  IPFYVN 71
           IPF+V 
Sbjct: 194 IPFFVC 199

Length = 373

>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family

 Score = 73.0 bits (180), Expect = 1e-16
 Identities = 28/63 (44%), Positives = 37/63 (58%)

Query: 9   DIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 68
             I  LV  CSDQAH SVE+A     V +R +P D+  ++  +ALEAAI+ED  +G  P 
Sbjct: 91  RGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPI 150

Query: 69  YVN 71
            V 
Sbjct: 151 MVV 153

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345

>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain

 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 27/48 (56%), Positives = 36/48 (75%)

Query: 72  QAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119
           QAHSS+E+A L+ GV +R +P D++ K+RG  LE AIEED + G IPF
Sbjct: 149 QAHSSIEKAALIAGVELREIPTDENGKMRGMDLEKAIEEDKENGLIPF 196

Length = 373

>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family

 Score = 57.6 bits (140), Expect = 6e-11
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 72  QAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119
           QAH SVE+A     V +R +P D+  ++  +ALEAAI+ED  +G  P 
Sbjct: 103 QAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPI 150

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345

>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase

 Score = 52.8 bits (126), Expect = 3e-09
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 10  IIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDS--YKLRGDALEAAIEEDLKKG 64
           ++  LV Y SDQ HSS  +A L+GG+    IR L  D S  Y +  ++LE AI  DL KG
Sbjct: 226 LLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKG 285

Query: 65  KIPFYV 70
            IPF++
Sbjct: 286 FIPFFI 291

Length = 539

>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase

 Score = 49.1 bits (117), Expect = 5e-08
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 14  LVGYCSDQAHSSVERAGLLGGV---TIRGLPADDS--YKLRGDALEAAIEEDLKKGKIPF 68
           LV Y SDQ HS++++A  + G+     R L  D S  Y L  + L  AI  DL  G IPF
Sbjct: 182 LVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPF 241

Query: 69  YV 70
           ++
Sbjct: 242 FL 243

Length = 490

>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase

 Score = 40.8 bits (95), Expect = 5e-05
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 66  IPFYVNQAHSSVERAGLLGGV---TIRGLPADDS--YKLRGDALEAAIEEDLKKGKIPF 119
           + +  +Q HSS  +A L+GG+    IR L  D S  Y +  ++LE AI  DL KG IPF
Sbjct: 231 VVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPF 289

Length = 539

>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 17  YCSDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEEDLKKGKI 66
            CS+ AH S E+A    G+ +R +P     Y++  DALE AI+E+   G +
Sbjct: 161 VCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVV 211

Length = 460

>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 12/80 (15%)

Query: 52  ALEAAIEEDLKK-GK------IPFYVNQAHSSVERAGLLGGV---TIRGLPADDS--YKL 99
            L AA +  L+K GK      + +  +Q HS++++A  + G+     R L  D S  Y L
Sbjct: 162 VLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYAL 221

Query: 100 RGDALEAAIEEDLKKGKIPF 119
             + L  AI  DL  G IPF
Sbjct: 222 APELLSEAISTDLSSGLIPF 241

Length = 490

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
KOG0628|consensus	511		99.77
KOG0629|consensus	510		99.69
KOG0628|consensus	511		99.69
PLN02590	539	probable tyrosine decarboxylase	99.6
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.59
PLN02880	490	tyrosine decarboxylase	99.57
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.45
PLN02263	470	serine decarboxylase	99.42
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.3
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	98.98
PLN02590	539	probable tyrosine decarboxylase	98.97
KOG0629|consensus	510		98.89
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	98.89
PLN02880	490	tyrosine decarboxylase	98.88
PRK02769	380	histidine decarboxylase; Provisional	98.81
PLN03032	374	serine decarboxylase; Provisional	98.8
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	98.64
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	98.58
PLN02263	470	serine decarboxylase	98.47
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	98.46
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	98.04
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	97.7
PLN03032	374	serine decarboxylase; Provisional	97.48
PRK02769	380	histidine decarboxylase; Provisional	97.41
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	97.21
PRK05367	954	glycine dehydrogenase; Provisional	97.07
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	96.97
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	96.96
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	96.78
PRK13520	371	L-tyrosine decarboxylase; Provisional	96.77
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	96.59
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	95.96
PLN02414	993	glycine dehydrogenase (decarboxylating)	95.81
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	95.69
PRK05367	954	glycine dehydrogenase; Provisional	95.56
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	95.23
PLN02414	993	glycine dehydrogenase (decarboxylating)	95.03
PRK13520	371	L-tyrosine decarboxylase; Provisional	94.82
KOG2040|consensus	1001		94.41
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	94.0
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	93.95
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	93.76
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	93.7
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	93.3
KOG0630|consensus	838		93.22
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	92.7
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	91.76
KOG1383|consensus	491		91.69
PRK04366	481	glycine dehydrogenase subunit 2; Validated	91.61
PRK12566	954	glycine dehydrogenase; Provisional	91.54
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	91.53
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	91.32
PRK04366	481	glycine dehydrogenase subunit 2; Validated	91.21
PRK14012	404	cysteine desulfurase; Provisional	91.19
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	91.1
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	91.0
PLN02721	353	threonine aldolase	90.97
PRK14012	404	cysteine desulfurase; Provisional	90.9
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	90.08
PRK00451	447	glycine dehydrogenase subunit 1; Validated	89.99
PRK12566	954	glycine dehydrogenase; Provisional	89.69
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	89.1
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	88.53
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	88.37
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	87.98
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	87.64
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	87.56
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	87.48
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	87.37
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	87.26
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	86.9
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	86.78
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	86.76
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	86.74
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	86.37
PLN02721	353	threonine aldolase	86.31
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	85.91
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	85.87
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	85.63
PRK00451	447	glycine dehydrogenase subunit 1; Validated	85.28
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	84.95
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	84.93
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	84.91
PF06506	176	PrpR_N: Propionate catabolism activator; InterPro:	84.87
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	84.43
cd00609	350	AAT_like Aspartate aminotransferase family. This f	84.38
PRK06836	394	aspartate aminotransferase; Provisional	84.28
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	84.15
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	84.03
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	83.99
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	83.85
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	83.83
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	83.75
PLN02651	364	cysteine desulfurase	83.47
PRK08361	391	aspartate aminotransferase; Provisional	83.46
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	83.28
PRK12414	384	putative aminotransferase; Provisional	83.14
PTZ00377	481	alanine aminotransferase; Provisional	82.54
PRK05957	389	aspartate aminotransferase; Provisional	82.51
PRK00950	361	histidinol-phosphate aminotransferase; Validated	82.46
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	82.37
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	82.29
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	81.89
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	81.87
PRK02948	381	cysteine desulfurase; Provisional	81.76
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	81.74
PLN02368	407	alanine transaminase	81.18
PRK09082	386	methionine aminotransferase; Validated	81.17
PRK07309	391	aromatic amino acid aminotransferase; Validated	81.09
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	80.76
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	80.22
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	80.09

>KOG0628|consensus

Probab=99.77  E-value=4.5e-19  Score=141.19  Aligned_cols=81  Identities=47%  Similarity=0.875  Sum_probs=78.7

Q ss_pred             CCCCCccccccCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHH
Q psy9815           2 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAG   81 (119)
Q Consensus         2 ~p~~~~~~~~~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a   81 (119)
                      +|+++|...++++|+|||+|+|+|++|||.++|+.++.+|+|+++.|+++.|+++|++|+++|++||++++|.|||..++
T Consensus       171 ~p~~~e~~~~~~lV~Y~SDqahssveka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca  250 (511)
T KOG0628|consen  171 PPELHESSVLARLVAYCSDQAHSSVEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCA  250 (511)
T ss_pred             CCcccchhhhhhheEEecCcccchHHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             H
Q psy9815          82 L   82 (119)
Q Consensus        82 ~   82 (119)
                      .
T Consensus       251 ~  251 (511)
T KOG0628|consen  251 F  251 (511)
T ss_pred             c
Confidence            4

>KOG0629|consensus

Probab=99.69  E-value=1.7e-17  Score=131.37  Aligned_cols=81  Identities=26%  Similarity=0.438  Sum_probs=76.1

Q ss_pred             CCCCCcccc--ccCeeeeecCCccccHHHHHhccCc---eeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcch
Q psy9815           2 HPDWKDSDI--IANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSS   76 (119)
Q Consensus         2 ~p~~~~~~~--~~~lvv~~s~~~H~S~~ka~~~~G~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gs   76 (119)
                      +|++++.+.  ++++++|+|+++|||+.|||..+|+   +++.|+||++|+|++++||+.|.+.+++|.+||++.+|+||
T Consensus       184 ~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGT  263 (510)
T KOG0629|consen  184 FPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGT  263 (510)
T ss_pred             CchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCc
Confidence            688888774  7899999999999999999999995   89999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy9815          77 VERAGL   82 (119)
Q Consensus        77 t~~~a~   82 (119)
                      |..||-
T Consensus       264 TV~GAF  269 (510)
T KOG0629|consen  264 TVLGAF  269 (510)
T ss_pred             eeeecc
Confidence            998874

>KOG0628|consensus

Probab=99.69  E-value=1.5e-17  Score=132.51  Aligned_cols=115  Identities=34%  Similarity=0.525  Sum_probs=96.5

Q ss_pred             CCCCCCc-----cccccCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHH-----------HhCC
Q psy9815           1 AHPDWKD-----SDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED-----------LKKG   64 (119)
Q Consensus         1 ~~p~~~~-----~~~~~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~-----------~~~g   64 (119)
                      .+|.+||     ++|++++..++-++.|.+   +...+|+.+.+. +++..-.-.++-.+.+++.           +...
T Consensus       107 ssPa~TELE~ivmDWL~kml~LP~~Fl~~~---~g~GgGviQ~ta-ses~lvallaaR~~~i~~~k~~~p~~~e~~~~~~  182 (511)
T KOG0628|consen  107 SSPACTELEVIVMDWLGKMLGLPAEFLSLG---LGDGGGVIQGTA-SESVLVALLAARTEKIEEIKSRPPELHESSVLAR  182 (511)
T ss_pred             cCcchHHHHHHHHHHHHHHhcCcHHHhccC---CCCCcceEecCc-chhHHHHHHHHHHHHHHHhhcCCCcccchhhhhh
Confidence            3689999     569999999999999987   577888888775 6665444444444444432           3446


Q ss_pred             CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815          65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF  119 (119)
Q Consensus        65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~pf  119 (119)
                      ++.|++.++|+|+++|+.+.|+++|.+++|.|+.|+++.|+++|++|+++|++||
T Consensus       183 lV~Y~SDqahssveka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf  237 (511)
T KOG0628|consen  183 LVAYCSDQAHSSVEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPF  237 (511)
T ss_pred             heEEecCcccchHHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccE
Confidence            8999999999999999999999999999999999999999999999999999998

>PLN02590 probable tyrosine decarboxylase

Probab=99.60  E-value=7.6e-16  Score=126.44  Aligned_cols=72  Identities=42%  Similarity=0.674  Sum_probs=67.1

Q ss_pred             ccCeeeeecCCccccHHHHHhccCc---eeEEeecC--CCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815          11 IANLVGYCSDQAHSSVERAGLLGGV---TIRGLPAD--DSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL   82 (119)
Q Consensus        11 ~~~lvv~~s~~~H~S~~ka~~~~G~---~~~~v~~d--~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~   82 (119)
                      .+++++|+|+++|||+.||++++|+   +++.||+|  ++++||+++|+++|++++++|+.|+++++|+|||++|+.
T Consensus       227 ~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGai  303 (539)
T PLN02590        227 LPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAV  303 (539)
T ss_pred             CCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCccc
Confidence            4689999999999999999999999   69999998  468999999999999999999999999999999998753

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.59  E-value=1.1e-15  Score=120.52  Aligned_cols=72  Identities=35%  Similarity=0.570  Sum_probs=64.8

Q ss_pred             ccCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815          11 IANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL   82 (119)
Q Consensus        11 ~~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~   82 (119)
                      .+++++|+|+++|||+.|||+++|+.++.||+|++++||+++|+++++++.++|..|+++++++|||.+|+.
T Consensus       139 ~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~  210 (373)
T PF00282_consen  139 IPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAI  210 (373)
T ss_dssp             CSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB
T ss_pred             ccccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccc
Confidence            468999999999999999999999999999999999999999999999999999999999999999988764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PLN02880 tyrosine decarboxylase

Probab=99.57  E-value=2.9e-15  Score=121.85  Aligned_cols=72  Identities=33%  Similarity=0.579  Sum_probs=67.1

Q ss_pred             ccCeeeeecCCccccHHHHHhccCc---eeEEeecCC--CcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815          11 IANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADD--SYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL   82 (119)
Q Consensus        11 ~~~lvv~~s~~~H~S~~ka~~~~G~---~~~~v~~d~--~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~   82 (119)
                      .+++++|+|+++|||+.||++++|+   +++.||+|+  +++||+++|++++++++++|..|+++++|+|||++|+.
T Consensus       179 ~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~Gai  255 (490)
T PLN02880        179 LEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAV  255 (490)
T ss_pred             cCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCccc
Confidence            3689999999999999999999999   589999985  78999999999999999999999999999999999874

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.45  E-value=9e-14  Score=115.58  Aligned_cols=68  Identities=19%  Similarity=0.189  Sum_probs=64.6

Q ss_pred             eeeecCCccccHHHHHhccCc---eeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL   82 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~   82 (119)
                      ++|+|+.+|||+.||+.++|+   +++.||+|++++||+++|++++++++++|..|++++++.|||+.|+.
T Consensus       224 ~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~Gai  294 (608)
T TIGR03811       224 KWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAV  294 (608)
T ss_pred             EEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCccc
Confidence            799999999999999999999   69999999999999999999999999999999999999999998764

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PLN02263 serine decarboxylase

Probab=99.42  E-value=1.2e-13  Score=111.87  Aligned_cols=69  Identities=14%  Similarity=0.134  Sum_probs=62.4

Q ss_pred             cccCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHH
Q psy9815          10 IIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAG   81 (119)
Q Consensus        10 ~~~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a   81 (119)
                      +.++.++|+|+++|||+.||++++|++++.||+|++|+||+++|++++.++.   ..|+++++|.|||.+|+
T Consensus       175 ~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~---~~P~iVvataGTT~~GA  243 (470)
T PLN02263        175 VFPDGILYASRESHYSVFKAARMYRMECVKVDTLVSGEIDCADFKAKLLANK---DKPAIINVNIGTTVKGA  243 (470)
T ss_pred             hcCCcEEEEcCCccHHHHHHHHhcCCcceEeccCCCCcCcHHHHHHHHHhCC---CCcEEEEEEecCCCCcC
Confidence            4456789999999999999999999999999999999999999999997753   46999999999998776

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.30  E-value=3e-12  Score=105.05  Aligned_cols=71  Identities=18%  Similarity=0.261  Sum_probs=66.4

Q ss_pred             cCeeeeecCCccccHHHHHhccCc---eeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815          12 ANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL   82 (119)
Q Consensus        12 ~~lvv~~s~~~H~S~~ka~~~~G~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~   82 (119)
                      +++++|+|++.|||+.|+++++|+   +++.||+|++|+||+++|++++++++++|..|+++++++|||++|+.
T Consensus       208 ~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGai  281 (522)
T TIGR03799       208 DGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNI  281 (522)
T ss_pred             CceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCc
Confidence            578999999999999999999998   79999999999999999999999999999999999999999987753

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=98.98  E-value=1.1e-09  Score=86.65  Aligned_cols=56  Identities=36%  Similarity=0.633  Sum_probs=50.1

Q ss_pred             CCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815          64 GKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF  119 (119)
Q Consensus        64 g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~pf  119 (119)
                      ..+.|++.++|.|+.|++.++|+.++.|++|++++||.++|+++|+++.++|.+||
T Consensus       141 ~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~  196 (373)
T PF00282_consen  141 KPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPF  196 (373)
T ss_dssp             SEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEE
T ss_pred             ccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccce
Confidence            35788999999999999999999999999999999999999999999999999985

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PLN02590 probable tyrosine decarboxylase

Probab=98.97  E-value=8.5e-10  Score=90.98  Aligned_cols=56  Identities=43%  Similarity=0.679  Sum_probs=52.3

Q ss_pred             CCccEEeecCcchHHHHHHhcCc---eeEEeecC--CCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815          64 GKIPFYVNQAHSSVERAGLLGGV---TIRGLPAD--DSYKLRGDALEAAIEEDLKKGKIPF  119 (119)
Q Consensus        64 g~~p~~v~~t~gst~~~a~~~g~---~~~~v~~d--~~~~m~~~~L~~~i~~~~~~G~~pf  119 (119)
                      .++.|++.++|+|+.|+++++|+   +++.||+|  ++++||+++|+++|++|+++|++||
T Consensus       229 ~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~  289 (539)
T PLN02590        229 QLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPF  289 (539)
T ss_pred             CEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcE
Confidence            46788999999999999999999   79999998  5789999999999999999999997

>KOG0629|consensus

Probab=98.89  E-value=2.5e-09  Score=85.42  Aligned_cols=56  Identities=30%  Similarity=0.409  Sum_probs=53.7

Q ss_pred             CCccEEeecCcchHHHHHHhcCc---eeEEeecCCCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815          64 GKIPFYVNQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF  119 (119)
Q Consensus        64 g~~p~~v~~t~gst~~~a~~~g~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~pf  119 (119)
                      .++.|++.++|+|+.+||+++|+   ++++|+||++|+|++++||+.|.+.+++|.+||
T Consensus       197 ~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf  255 (510)
T KOG0629|consen  197 PLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPF  255 (510)
T ss_pred             cEEEEecccchhhHHHHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCe
Confidence            36789999999999999999997   999999999999999999999999999999998

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=98.89  E-value=1.1e-09  Score=88.82  Aligned_cols=64  Identities=31%  Similarity=0.434  Sum_probs=59.8

Q ss_pred             eeeeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHH
Q psy9815          14 LVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAG   81 (119)
Q Consensus        14 lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a   81 (119)
                      ..+|+|+.+|+|+.||+.++|+.++.||++. +++||+++|++++.++...|    ++++++|||.+|.
T Consensus       158 P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g----~vV~~aGtT~~G~  222 (460)
T COG0076         158 PNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGG----VVVGTAGTTDTGS  222 (460)
T ss_pred             CeEEecCcchhHHHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCc----eEEEEecCCCCCc
Confidence            3799999999999999999999999999988 89999999999999998887    8999999998886

>PLN02880 tyrosine decarboxylase

Probab=98.88  E-value=3.1e-09  Score=86.73  Aligned_cols=56  Identities=34%  Similarity=0.572  Sum_probs=52.0

Q ss_pred             CCccEEeecCcchHHHHHHhcCc---eeEEeecCC--CCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815          64 GKIPFYVNQAHSSVERAGLLGGV---TIRGLPADD--SYKLRGDALEAAIEEDLKKGKIPF  119 (119)
Q Consensus        64 g~~p~~v~~t~gst~~~a~~~g~---~~~~v~~d~--~~~m~~~~L~~~i~~~~~~G~~pf  119 (119)
                      +++.|++.++|+|+.|+++++|+   +++.||+|+  +++||+++|+++|++++++|++||
T Consensus       181 ~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~  241 (490)
T PLN02880        181 KLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPF  241 (490)
T ss_pred             CeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccE
Confidence            46788999999999999999999   599999974  789999999999999999999997

>PRK02769 histidine decarboxylase; Provisional

Probab=98.81  E-value=3.6e-09  Score=83.84  Aligned_cols=70  Identities=17%  Similarity=0.171  Sum_probs=61.9

Q ss_pred             cccCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815          10 IIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL   82 (119)
Q Consensus        10 ~~~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~   82 (119)
                      |.+...+|+|+..|+|+.|+++.+|+..+.||++++|+||+++|++++.++   +..|.+++.++||+.+|+.
T Consensus       107 ~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~i  176 (380)
T PRK02769        107 LFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAI  176 (380)
T ss_pred             hCCCcEEEeCCCceehHHHHHHHcCCCCceeccCCCCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCccc
Confidence            344568999999999999999999999999999999999999999999775   5568899999999988764

>PLN03032 serine decarboxylase; Provisional

Probab=98.80  E-value=3.5e-09  Score=83.91  Aligned_cols=67  Identities=21%  Similarity=0.227  Sum_probs=58.9

Q ss_pred             CeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815          13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL   82 (119)
Q Consensus        13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~   82 (119)
                      +.++|+|+..|+|+.|+++++|+.++.||+|++|+||+++|++++.++.   ..|++++.++|||++|+.
T Consensus       111 ~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~~g~id~~~L~~~i~~~~---~~~~lvv~tagtt~tG~i  177 (374)
T PLN03032        111 DGILYASRESHYSVFKAARMYRMEAVKVPTLPSGEIDYDDLERALAKNR---DKPAILNVNIGTTVKGAV  177 (374)
T ss_pred             CcEEEeCCCceeHHHHHHHHcCCCCeEeeeCCCCcCcHHHHHHHHHHcC---CCCEEEEEEecCcCCccC
Confidence            3479999999999999999999999999999999999999999997642   258888999999987653

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=98.64  E-value=4.8e-08  Score=81.66  Aligned_cols=54  Identities=19%  Similarity=0.197  Sum_probs=49.5

Q ss_pred             ccEEeecCcchHHHHHHhcCc---eeEEeecCCCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815          66 IPFYVNQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF  119 (119)
Q Consensus        66 ~p~~v~~t~gst~~~a~~~g~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~pf  119 (119)
                      +.+++..+|.|+.|++.++|+   +++.||+|+++|||+++|+++|++++++|..||
T Consensus       224 ~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~  280 (608)
T TIGR03811       224 KWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPIL  280 (608)
T ss_pred             EEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeE
Confidence            456666669999999999999   699999999999999999999999999999885

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=98.58  E-value=3.8e-08  Score=79.25  Aligned_cols=64  Identities=14%  Similarity=0.132  Sum_probs=56.8

Q ss_pred             CeeeeecCCccccHHHHHhccCceeEEeecCCC-cccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815          13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL   82 (119)
Q Consensus        13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~-~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~   82 (119)
                      +..+|+|++.|+|+.|+++.+|++++.||+|+. ++||++.|++++.++      +++++.++||+++|+.
T Consensus       138 ~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~~------t~lV~~t~g~t~tG~i  202 (431)
T TIGR01788       138 KPNLVMGSNVQVCWEKFARYFDVELREVPMDPGRYVIDPEQVVEAVDEN------TIGVVCILGTTYTGEY  202 (431)
T ss_pred             CcEEEEcCcchHHHHHHHHHcCceeEEEecCCCceeeCHHHHHHHHhhC------CeEEEEEeCCCCCccc
Confidence            568999999999999999999999999999975 699999999999753      5788899999888764

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PLN02263 serine decarboxylase

Probab=98.47  E-value=2.5e-07  Score=75.36  Aligned_cols=49  Identities=14%  Similarity=0.066  Sum_probs=45.5

Q ss_pred             CCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHH
Q psy9815          64 GKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL  112 (119)
Q Consensus        64 g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~  112 (119)
                      ..+.|++.++|.|+.|+++++|++++.||+|++|+||+++|+++|+++.
T Consensus       178 ~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~  226 (470)
T PLN02263        178 DGILYASRESHYSVFKAARMYRMECVKVDTLVSGEIDCADFKAKLLANK  226 (470)
T ss_pred             CcEEEEcCCccHHHHHHHHhcCCcceEeccCCCCcCcHHHHHHHHHhCC
Confidence            3478999999999999999999999999999999999999999998764

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=98.46  E-value=3.3e-07  Score=75.54  Aligned_cols=56  Identities=20%  Similarity=0.278  Sum_probs=52.5

Q ss_pred             CCccEEeecCcchHHHHHHhcCc---eeEEeecCCCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815          64 GKIPFYVNQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF  119 (119)
Q Consensus        64 g~~p~~v~~t~gst~~~a~~~g~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~pf  119 (119)
                      +.+++++...|.|+.+++.++|+   +++.||+|++|+||+++|+++|++++++|..||
T Consensus       209 ~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~  267 (522)
T TIGR03799       209 GLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPL  267 (522)
T ss_pred             ceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcE
Confidence            45789999999999999999999   899999999999999999999999999998875

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=98.04  E-value=7.4e-06  Score=62.72  Aligned_cols=69  Identities=39%  Similarity=0.541  Sum_probs=58.2

Q ss_pred             CeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHH
Q psy9815          13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAG   81 (119)
Q Consensus        13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a   81 (119)
                      +.++++++..|+|+.+++..+|.+++.+|+++++.++++.|++++.++..++..+.++..+++++.+|.
T Consensus        95 ~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~  163 (345)
T cd06450          95 KLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGA  163 (345)
T ss_pred             CeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCC
Confidence            568999999999999999999999999999988999999999999887767666666666666665543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=97.70  E-value=5.3e-05  Score=61.73  Aligned_cols=50  Identities=34%  Similarity=0.446  Sum_probs=46.9

Q ss_pred             ccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHHHHHhCC
Q psy9815          66 IPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEEDLKKG  115 (119)
Q Consensus        66 ~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~~~~~~G  115 (119)
                      ..+++..+|.|..|++.++|++++.+++++ +++||+++|+++|+++...|
T Consensus       159 ~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g  209 (460)
T COG0076         159 NIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGG  209 (460)
T ss_pred             eEEecCcchhHHHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCc
Confidence            478999999999999999999999999988 89999999999999998875

>PLN03032 serine decarboxylase; Provisional

Probab=97.48  E-value=0.00025  Score=56.35  Aligned_cols=47  Identities=23%  Similarity=0.239  Sum_probs=44.1

Q ss_pred             CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815          65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  111 (119)
Q Consensus        65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~  111 (119)
                      -+.+++...|.|+.+++.++|++++.||+|++|+||+++|+++|+++
T Consensus       112 ~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~~g~id~~~L~~~i~~~  158 (374)
T PLN03032        112 GILYASRESHYSVFKAARMYRMEAVKVPTLPSGEIDYDDLERALAKN  158 (374)
T ss_pred             cEEEeCCCceeHHHHHHHHcCCCCeEeeeCCCCcCcHHHHHHHHHHc
Confidence            36899999999999999999999999999999999999999999864

>PRK02769 histidine decarboxylase; Provisional

Probab=97.41  E-value=0.00036  Score=55.48  Aligned_cols=50  Identities=20%  Similarity=0.210  Sum_probs=45.4

Q ss_pred             hCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815          62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  111 (119)
Q Consensus        62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~  111 (119)
                      ..+...+++...|.|+.+++.++|++.+.|+++++|+||.++|+++|+++
T Consensus       108 ~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~~g~id~~~L~~~i~~~  157 (380)
T PRK02769        108 FPDGTLYYSKDTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIKEN  157 (380)
T ss_pred             CCCcEEEeCCCceehHHHHHHHcCCCCceeccCCCCcCcHHHHHHHHHhC
Confidence            34557888899999999999999999999999999999999999999875

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=97.21  E-value=0.00067  Score=59.55  Aligned_cols=63  Identities=14%  Similarity=0.105  Sum_probs=52.2

Q ss_pred             cCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchH
Q psy9815          12 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSV   77 (119)
Q Consensus        12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst   77 (119)
                      .|.++++|+.+|.+.-+++...|+.++.||+|++|.+|.++|++++.+.   +..+.++..|++|+
T Consensus       577 ~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~~---~~~taaV~iT~pst  639 (939)
T TIGR00461       577 HRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQH---GDELAAVMVTYPST  639 (939)
T ss_pred             CCCEEEEEccccCcCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhhc---CCceEEEEEEeCCc
Confidence            5788999999999999999999999999999999999999999999751   22345555555554

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK05367 glycine dehydrogenase; Provisional

Probab=97.07  E-value=0.00072  Score=59.56  Aligned_cols=64  Identities=17%  Similarity=0.168  Sum_probs=51.9

Q ss_pred             cCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHH
Q psy9815          12 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVE   78 (119)
Q Consensus        12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~   78 (119)
                      .+-+++.|+.+|.|..+++.+.|+.++.||+|.+|.+|.++|++++.+.   +-.+.++..+++|+.
T Consensus       589 ~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~---~~~la~V~it~pst~  652 (954)
T PRK05367        589 HRDVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNIDLDDLRAKAEEH---ADNLAAIMITYPSTH  652 (954)
T ss_pred             CCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCCCCcCHHHHHHHHhcc---CCCeEEEEEEcCCCC
Confidence            3567999999999999999999999999999999999999999988653   113455556666554

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=96.97  E-value=0.0021  Score=49.17  Aligned_cols=54  Identities=39%  Similarity=0.513  Sum_probs=47.6

Q ss_pred             CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHhCCCCC
Q psy9815          65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIP  118 (119)
Q Consensus        65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~p  118 (119)
                      .++++....|.+..+++..+|.+++.|++++++.+|+++|++++.++.++|..|
T Consensus        96 ~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~  149 (345)
T cd06450          96 LVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNP  149 (345)
T ss_pred             eEEEEcCcchhHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCc
Confidence            466777889999999999999999999999999999999999999877777544

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=96.96  E-value=0.0011  Score=53.67  Aligned_cols=47  Identities=17%  Similarity=0.243  Sum_probs=43.0

Q ss_pred             CccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHHHHHHHHH
Q psy9815          65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEED  111 (119)
Q Consensus        65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L~~~i~~~  111 (119)
                      ...+++...|.|+.+++.++|++++.|++|++ ++||+++|+++|+++
T Consensus       139 ~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~~  186 (431)
T TIGR01788       139 PNLVMGSNVQVCWEKFARYFDVELREVPMDPGRYVIDPEQVVEAVDEN  186 (431)
T ss_pred             cEEEEcCcchHHHHHHHHHcCceeEEEecCCCceeeCHHHHHHHHhhC
Confidence            46899999999999999999999999999986 699999999999764

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=96.78  E-value=0.0047  Score=50.24  Aligned_cols=80  Identities=19%  Similarity=0.217  Sum_probs=57.6

Q ss_pred             ccCceeEEee--cCCCcccCHHHHHHHHHHHHhC--CCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHH
Q psy9815          32 LGGVTIRGLP--ADDSYKLRGDALEAAIEEDLKK--GKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAA  107 (119)
Q Consensus        32 ~~G~~~~~v~--~d~~~~m~~~~L~~~i~~~~~~--g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~  107 (119)
                      +.|..-+++.  ..++|....-..-++.-+.+-+  ..+.++-..+|||---.|.+.|++|+.|++|++|.+|.++|+++
T Consensus       121 ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~~G~VDlddLk~k  200 (496)
T COG1003         121 ITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLRAK  200 (496)
T ss_pred             hcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEEEecCCCCCccHHHHHHH
Confidence            4555333332  2334555444444444444422  35678889999999999999999999999999999999999999


Q ss_pred             HHHH
Q psy9815         108 IEED  111 (119)
Q Consensus       108 i~~~  111 (119)
                      +.+.
T Consensus       201 ~~~~  204 (496)
T COG1003         201 AEDN  204 (496)
T ss_pred             hccc
Confidence            8743

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=96.77  E-value=0.0019  Score=49.81  Aligned_cols=47  Identities=30%  Similarity=0.434  Sum_probs=42.1

Q ss_pred             CeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      +-.++.++..|+|+.+++...|+.++.||++.++.++++.|++++.+
T Consensus       104 ~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  150 (371)
T PRK13520        104 KPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDD  150 (371)
T ss_pred             CceEEecCcchHHHHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhh
Confidence            34678899999999999999999999999998899999999999864

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=96.59  E-value=0.0064  Score=49.53  Aligned_cols=47  Identities=26%  Similarity=0.198  Sum_probs=40.4

Q ss_pred             cCeeeeecCCccccHHHHHhccCceeEEeec---CCCcccCHHHHHHHHHH
Q psy9815          12 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPA---DDSYKLRGDALEAAIEE   59 (119)
Q Consensus        12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~---d~~~~m~~~~L~~~i~~   59 (119)
                      ++.+++++. +|+|+.||+.+.|+..+.|++   ++++.||+++|++++.+
T Consensus       151 gd~VI~p~~-th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~  200 (444)
T TIGR03531       151 AKYVIWPRI-DQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEE  200 (444)
T ss_pred             CCEEEEECc-ChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHh
Confidence            467777775 699999999999999888885   45799999999999974

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=95.96  E-value=0.013  Score=51.63  Aligned_cols=47  Identities=15%  Similarity=0.178  Sum_probs=43.9

Q ss_pred             CCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          64 GKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        64 g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +.++++...+|||.-..+.+.|++++.|++|++|++|.++|++++++
T Consensus       578 R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~  624 (939)
T TIGR00461       578 RNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQ  624 (939)
T ss_pred             CCEEEEEccccCcCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhh
Confidence            45788999999999999999999999999999999999999999975

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=95.81  E-value=0.013  Score=52.03  Aligned_cols=47  Identities=19%  Similarity=0.161  Sum_probs=43.4

Q ss_pred             CeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      +-.++.+...|.|..+++.+.|++++.||+|++|.+|.++|++++..
T Consensus       616 r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~  662 (993)
T PLN02414        616 RNVCIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEA  662 (993)
T ss_pred             CCEEEeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhc
Confidence            45788999999999999999999999999999999999999999974

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=95.69  E-value=0.013  Score=45.33  Aligned_cols=45  Identities=27%  Similarity=0.395  Sum_probs=40.7

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .+++++..|++..+++...|++++.+|.+.++.++++.|++++.+
T Consensus       108 ~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~~  152 (373)
T TIGR03812       108 NIIVPESAHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDD  152 (373)
T ss_pred             EEEECCcchHHHHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHhh
Confidence            577889999999999999999999999988999999999998854

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK05367 glycine dehydrogenase; Provisional

Probab=95.56  E-value=0.024  Score=50.18  Aligned_cols=46  Identities=20%  Similarity=0.320  Sum_probs=42.8

Q ss_pred             CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      .+.++....|+|...++.++|++++.|++|++|++|.++|++++++
T Consensus       591 ~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~  636 (954)
T PRK05367        591 DVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNIDLDDLRAKAEE  636 (954)
T ss_pred             CEEEEEchhhhhhHHHHHHCCCEEEEECCCCCCCcCHHHHHHHHhc
Confidence            3588899999999999999999999999999999999999999975

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=95.23  E-value=0.048  Score=44.50  Aligned_cols=47  Identities=23%  Similarity=0.225  Sum_probs=40.7

Q ss_pred             CCccEEeecCcchHHHHHHhcCceeEEeec---CCCCCcCHHHHHHHHHH
Q psy9815          64 GKIPFYVNQAHSSVERAGLLGGVTIRGLPA---DDSYKLRGDALEAAIEE  110 (119)
Q Consensus        64 g~~p~~v~~t~gst~~~a~~~g~~~~~v~~---d~~~~m~~~~L~~~i~~  110 (119)
                      |-.+++...+|.|+.+++.++|++++.|++   ++++.||+++|+++|++
T Consensus       151 gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~  200 (444)
T TIGR03531       151 AKYVIWPRIDQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEE  200 (444)
T ss_pred             CCEEEEECcChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHh
Confidence            445667777899999999999999999995   56799999999999984

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=95.03  E-value=0.14  Score=45.74  Aligned_cols=45  Identities=18%  Similarity=0.182  Sum_probs=42.3

Q ss_pred             ccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          66 IPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        66 ~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      .+++....|||....+.+.|++++.|++|++|.+|.++|+++|..
T Consensus       618 ~vli~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~  662 (993)
T PLN02414        618 VCIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEA  662 (993)
T ss_pred             EEEeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhc
Confidence            678889999999999999999999999999999999999999974

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=94.82  E-value=0.14  Score=39.43  Aligned_cols=47  Identities=30%  Similarity=0.414  Sum_probs=42.2

Q ss_pred             CCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          64 GKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        64 g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +-.+++....|.+..+++...|++++.|++++++.+|++.|+++|.+
T Consensus       104 ~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  150 (371)
T PRK13520        104 KPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDD  150 (371)
T ss_pred             CceEEecCcchHHHHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhh
Confidence            44577888899999999999999999999999999999999999964

>KOG2040|consensus

Probab=94.41  E-value=0.25  Score=42.56  Aligned_cols=49  Identities=14%  Similarity=0.175  Sum_probs=44.8

Q ss_pred             CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHh
Q psy9815          65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLK  113 (119)
Q Consensus        65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~  113 (119)
                      .+.++-+.+|||--..|.+.|++|..|.+|.+|.+|...|+++-++...
T Consensus       631 nvClIPvSAHGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~  679 (1001)
T KOG2040|consen  631 NVCLIPVSAHGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKD  679 (1001)
T ss_pred             eeEEEeecccCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhh
Confidence            5677789999999999999999999999999999999999999887654

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=94.00  E-value=0.23  Score=38.47  Aligned_cols=46  Identities=22%  Similarity=0.281  Sum_probs=39.2

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCCC--cccCHHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIEED   60 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~--~~m~~~~L~~~i~~~   60 (119)
                      .++++...|++...++...|+.++.+|.+.+  +.++++.|++++.+.
T Consensus        85 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~  132 (361)
T cd06452          85 WVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEV  132 (361)
T ss_pred             EEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHH
Confidence            4667789999999889999999999998865  499999999988653

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=93.95  E-value=0.54  Score=36.42  Aligned_cols=61  Identities=21%  Similarity=0.257  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC--CCcCHHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIEED  111 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~--~~m~~~~L~~~i~~~  111 (119)
                      ..+...+......|-.+++...+|.++..++...|++++.|+++.+  +.+|++.|++++++.
T Consensus        70 ~al~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~  132 (361)
T cd06452          70 EGKFAVMHSLCEKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEV  132 (361)
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHH
Confidence            3455555555556666666777899998899999999999999865  499999999999753

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=93.76  E-value=0.087  Score=43.06  Aligned_cols=48  Identities=19%  Similarity=0.261  Sum_probs=43.5

Q ss_pred             cCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          12 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .|-+++..+.+|-.---+|.+.|..++.|+||++|.+|.++|+++..+
T Consensus       156 ~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~~  203 (496)
T COG1003         156 HRNICLIPDSAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAED  203 (496)
T ss_pred             cCcEEEeeccccCCChhhHhhcCceEEEEecCCCCCccHHHHHHHhcc
Confidence            567788889999888888899999999999999999999999999874

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=93.70  E-value=0.24  Score=39.00  Aligned_cols=46  Identities=26%  Similarity=0.286  Sum_probs=40.2

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeec--CCCcccCHHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPA--DDSYKLRGDALEAAIEED   60 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~--d~~~~m~~~~L~~~i~~~   60 (119)
                      .+++++..|+|...++...|++++.+|.  +..+..+++.|++++.+.
T Consensus       104 ~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~  151 (387)
T PRK09331        104 YVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEV  151 (387)
T ss_pred             EEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHh
Confidence            4677899999999999999999999998  678999999999998753

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=93.30  E-value=0.19  Score=38.75  Aligned_cols=47  Identities=26%  Similarity=0.351  Sum_probs=41.9

Q ss_pred             CCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          64 GKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        64 g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      |-.+++...+|.+...++...|++++.++.++++.+|.+.|++++++
T Consensus       106 g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~~  152 (373)
T TIGR03812       106 TPNIIVPESAHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDD  152 (373)
T ss_pred             CcEEEECCcchHHHHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHhh
Confidence            34577778899999999999999999999999999999999999865

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>KOG0630|consensus

Probab=93.22  E-value=0.23  Score=41.56  Aligned_cols=73  Identities=21%  Similarity=0.176  Sum_probs=55.5

Q ss_pred             ccCeeeeecCCccccHH-HHHhccCceeEE---eecCC----CcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815          11 IANLVGYCSDQAHSSVE-RAGLLGGVTIRG---LPADD----SYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL   82 (119)
Q Consensus        11 ~~~lvv~~s~~~H~S~~-ka~~~~G~~~~~---v~~d~----~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~   82 (119)
                      ++..++|.|+..|.-.. -+|+-+|+....   ++-.+    .|+||-..+++.++++...|..|+++++..|++-.|-.
T Consensus       229 ~aaPt~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~Gqn  308 (838)
T KOG0630|consen  229 LAAPTFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQN  308 (838)
T ss_pred             hcCceEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcch
Confidence            46889999999987544 457778884333   32222    27999999999999999999999999999888765543


Q ss_pred             h
Q psy9815          83 L   83 (119)
Q Consensus        83 ~   83 (119)
                      -
T Consensus       309 D  309 (838)
T KOG0630|consen  309 D  309 (838)
T ss_pred             H
Confidence            3

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=92.70  E-value=0.56  Score=36.93  Aligned_cols=78  Identities=22%  Similarity=0.227  Sum_probs=55.5

Q ss_pred             HHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeec--CCCCCcCHHHHHH
Q psy9815          29 AGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPA--DDSYKLRGDALEA  106 (119)
Q Consensus        29 a~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~--d~~~~m~~~~L~~  106 (119)
                      .+.+.|..-..+ +...    ...+..++......|-.+++....|.++..++...|++++.++.  ++++.+|+++|++
T Consensus        72 lA~~~g~~~~~~-~~g~----t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~  146 (387)
T PRK09331         72 LAEFLGMDEARV-THGA----REGKFAVMHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAE  146 (387)
T ss_pred             HHHHhCCCcEEE-eCCH----HHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHH
Confidence            356677642222 2211    13344555555556666777788899999899999999999998  7789999999999


Q ss_pred             HHHHH
Q psy9815         107 AIEED  111 (119)
Q Consensus       107 ~i~~~  111 (119)
                      ++++.
T Consensus       147 ~l~~~  151 (387)
T PRK09331        147 KIEEV  151 (387)
T ss_pred             HHHHh
Confidence            99764

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=91.76  E-value=0.63  Score=35.94  Aligned_cols=59  Identities=22%  Similarity=0.200  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHh---CCCccEEeecCcchH----HHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          52 ALEAAIEEDLK---KGKIPFYVNQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        52 ~L~~~i~~~~~---~g~~p~~v~~t~gst----~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      .+.-++.....   .|-.+++...+|++.    ...+...|.+++.|+.++++++|.+.|++++.+
T Consensus        73 a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  138 (373)
T cd06453          73 AINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTE  138 (373)
T ss_pred             HHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcC
Confidence            34444444333   455677777788775    344557899999999999999999999999864

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>KOG1383|consensus

Probab=91.69  E-value=0.068  Score=43.82  Aligned_cols=48  Identities=21%  Similarity=0.323  Sum_probs=42.7

Q ss_pred             CeeeeecCCccccHHHHHhccCceeEEeecC-CCcccCHHHHHHHHHHH
Q psy9815          13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEED   60 (119)
Q Consensus        13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d-~~~~m~~~~L~~~i~~~   60 (119)
                      +..+......|.+.+|+++..++.++.||.+ .+++||+....+.+.+.
T Consensus       170 ~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~eN  218 (491)
T KOG1383|consen  170 KPNIVTPQNVHAAFEKAARYFEVELREVPLDEGDYRVDPGKVVRMIDEN  218 (491)
T ss_pred             CccccchHHHHHHHHHHHhhEEEEEEeeeccccceEecHHHHHHHhccc
Confidence            4556778899999999999999999999999 68999999999988764

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=91.61  E-value=0.37  Score=39.38  Aligned_cols=45  Identities=20%  Similarity=0.318  Sum_probs=41.1

Q ss_pred             ccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          66 IPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        66 ~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      .+++....|++....+...|++++.++++++|.+|.++|++++..
T Consensus       163 ~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~~  207 (481)
T PRK04366        163 EVIVPDSAHGTNPASAAMAGFKVVEIPSNEDGLVDLEALKAAVGE  207 (481)
T ss_pred             EEEEcCCccHhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhhccc
Confidence            577788899999999999999999999998899999999998864

>PRK12566 glycine dehydrogenase; Provisional

Probab=91.54  E-value=0.32  Score=43.27  Aligned_cols=48  Identities=15%  Similarity=0.162  Sum_probs=41.1

Q ss_pred             cCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          12 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .+-.+++++..|.+---++...|+.++.||+|++|.+|.++|++.+.+
T Consensus       590 ~r~~vLIp~saHgtNpasa~~~GieVv~Vp~D~~G~iDle~L~a~I~~  637 (954)
T PRK12566        590 QRDICLIPSSAHGTNPASAQMAGMRVVIVECDPDGNVDLDDLKAKAAA  637 (954)
T ss_pred             CCCEEEecccccccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHhhc
Confidence            356678889999776666788999999999999999999999999864

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=91.53  E-value=1.5  Score=34.22  Aligned_cols=84  Identities=19%  Similarity=0.229  Sum_probs=56.4

Q ss_pred             ccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCc
Q psy9815          22 AHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKL   99 (119)
Q Consensus        22 ~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m   99 (119)
                      .|-..++.+.+.|..-..+ +...    .+.+...+......|-.+++...+|.+.-.++...|++++.++.+  +++.+
T Consensus        53 ~~~~~e~lA~~~g~~~~~i-~~g~----~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~  127 (370)
T TIGR02539        53 IHDFLEDLAEFLGMDEARV-THGA----REGKFAVMHALCKEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKV  127 (370)
T ss_pred             HHHHHHHHHHHhCCCceEE-ECCh----HHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHHcCCEEEEEecCCcccCCc
Confidence            3444556677788743333 2111    133333444444555556666688888889999999999999986  45899


Q ss_pred             CHHHHHHHHHH
Q psy9815         100 RGDALEAAIEE  110 (119)
Q Consensus       100 ~~~~L~~~i~~  110 (119)
                      |++.|++++++
T Consensus       128 d~~~l~~~l~~  138 (370)
T TIGR02539       128 DPEGYGEVIEE  138 (370)
T ss_pred             CHHHHHHHHHH
Confidence            99999999975

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=91.32  E-value=0.67  Score=37.32  Aligned_cols=49  Identities=27%  Similarity=0.265  Sum_probs=43.6

Q ss_pred             CCCccEEeecCcchHHHHHHhc---CceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815          63 KGKIPFYVNQAHSSVERAGLLG---GVTIRGLPADDSYKLRGDALEAAIEED  111 (119)
Q Consensus        63 ~g~~p~~v~~t~gst~~~a~~~---g~~~~~v~~d~~~~m~~~~L~~~i~~~  111 (119)
                      .|...+.+..=|-++-..+..+   |++|..+++|.+|.++.+.|+++|+.+
T Consensus        90 ~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~  141 (386)
T COG1104          90 KGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPD  141 (386)
T ss_pred             CCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCC
Confidence            4667888888899998888888   999999999999999999999999754

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=91.21  E-value=0.37  Score=39.38  Aligned_cols=46  Identities=22%  Similarity=0.326  Sum_probs=40.9

Q ss_pred             eeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          14 LVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        14 lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      -.++.++..|.+..+.+...|+.++.+|++.++.+|.+.|++++..
T Consensus       162 ~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~~  207 (481)
T PRK04366        162 TEVIVPDSAHGTNPASAAMAGFKVVEIPSNEDGLVDLEALKAAVGE  207 (481)
T ss_pred             CEEEEcCCccHhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhhccc
Confidence            4678889999999999999999999999988899999999988754

>PRK14012 cysteine desulfurase; Provisional

Probab=91.19  E-value=1  Score=35.55  Aligned_cols=49  Identities=24%  Similarity=0.243  Sum_probs=39.8

Q ss_pred             hCCCccEEeecCcchHHHHHHh---cCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          62 KKGKIPFYVNQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        62 ~~g~~p~~v~~t~gst~~~a~~---~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      ..|-.+++...+|.++......   .|++++.|++|++|.+|++.|+++|.+
T Consensus        92 ~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~  143 (404)
T PRK14012         92 KKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRD  143 (404)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence            4565677778889888766554   499999999999999999999999864

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=91.10  E-value=0.9  Score=35.49  Aligned_cols=61  Identities=23%  Similarity=0.212  Sum_probs=47.6

Q ss_pred             HHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecC-CCCCcCHHHHHHHHHHH
Q psy9815          51 DALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEED  111 (119)
Q Consensus        51 ~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d-~~~~m~~~~L~~~i~~~  111 (119)
                      .+|.-++... ...|-.+++..-|..+|..+...+|++++-+++| +++.||+++|+++|.+.
T Consensus        51 ~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~  113 (363)
T PF01041_consen   51 SALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPK  113 (363)
T ss_dssp             HHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccC
Confidence            5666666553 3457788899999999999999999999999998 78999999999998753

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=91.00  E-value=0.48  Score=36.61  Aligned_cols=46  Identities=26%  Similarity=0.227  Sum_probs=37.2

Q ss_pred             eeeeecCCccccH----HHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          14 LVGYCSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        14 lvv~~s~~~H~S~----~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      -.+++++..|.+.    .+.++..|..++.|+.+.++.++++.|++.+.+
T Consensus        89 ~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  138 (373)
T cd06453          89 DEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTE  138 (373)
T ss_pred             CEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcC
Confidence            3577888999885    344557789999999998899999999998854

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PLN02721 threonine aldolase

Probab=90.97  E-value=0.37  Score=36.78  Aligned_cols=45  Identities=29%  Similarity=0.337  Sum_probs=37.5

Q ss_pred             eeeecCCccccHHH---HHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVER---AGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~k---a~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .|++++.+|++..+   .+...|..++.+|.++++.+|++.|++.+.+
T Consensus        82 ~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  129 (353)
T PLN02721         82 EVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRP  129 (353)
T ss_pred             eEEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHh
Confidence            46678889988877   3567889999999888899999999999874

>PRK14012 cysteine desulfurase; Provisional

Probab=90.90  E-value=0.23  Score=39.21  Aligned_cols=45  Identities=20%  Similarity=0.152  Sum_probs=36.9

Q ss_pred             eeeecCCccccHHHHHhc---cCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~---~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .|++++..|.|...++..   .|+.++.++.|+++.++++.|++++.+
T Consensus        96 ~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~  143 (404)
T PRK14012         96 HIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRD  143 (404)
T ss_pred             EEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence            467788889888766554   488999999998999999999998853

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=90.08  E-value=1.2  Score=34.73  Aligned_cols=45  Identities=22%  Similarity=0.282  Sum_probs=38.4

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecC--CCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d--~~~~m~~~~L~~~i~~   59 (119)
                      .++.+...|+|...++...|..++.+|.+  .++.+|++.|++++..
T Consensus        92 ~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  138 (370)
T TIGR02539        92 WVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEE  138 (370)
T ss_pred             EEEECCcccHHHHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHH
Confidence            46678899999998889999999999876  3589999999999865

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=89.99  E-value=1.3  Score=35.32  Aligned_cols=48  Identities=23%  Similarity=0.297  Sum_probs=40.2

Q ss_pred             hCCCccEEeecCcchHHHHHHh----cCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          62 KKGKIPFYVNQAHSSVERAGLL----GGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        62 ~~g~~p~~v~~t~gst~~~a~~----~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      ..|..+++....|++...+...    .|++++.|+++++ ++|.++|+++|..
T Consensus       152 ~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~~  203 (447)
T PRK00451        152 TKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVDD  203 (447)
T ss_pred             cCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcCC
Confidence            3556678888899999988765    5889999999988 9999999998853

>PRK12566 glycine dehydrogenase; Provisional

Probab=89.69  E-value=0.62  Score=41.52  Aligned_cols=45  Identities=18%  Similarity=0.208  Sum_probs=40.6

Q ss_pred             CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815          65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  109 (119)
Q Consensus        65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~  109 (119)
                      .+.++....|||.--.+...|++++.|++|++|.+|.++|++.++
T Consensus       592 ~~vLIp~saHgtNpasa~~~GieVv~Vp~D~~G~iDle~L~a~I~  636 (954)
T PRK12566        592 DICLIPSSAHGTNPASAQMAGMRVVIVECDPDGNVDLDDLKAKAA  636 (954)
T ss_pred             CEEEecccccccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHhh
Confidence            456777899988888888999999999999999999999999996

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=89.10  E-value=1.9  Score=33.06  Aligned_cols=60  Identities=15%  Similarity=0.091  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcch--HHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gs--t~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++.-.+......|-.+++....|.+  ....+...|.+++.+++++++.+|.++|++++++
T Consensus        61 ~al~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~  122 (356)
T cd06451          61 GAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQ  122 (356)
T ss_pred             HHHHHHHHHhCCCCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhc
Confidence            44555555544556556665555665  3466788899999999998889999999999965

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=88.53  E-value=0.51  Score=37.97  Aligned_cols=46  Identities=24%  Similarity=0.197  Sum_probs=40.8

Q ss_pred             eeeecCCccccHHHHHhcc---CceeEEeecCCCcccCHHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLG---GVTIRGLPADDSYKLRGDALEAAIEED   60 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~---G~~~~~v~~d~~~~m~~~~L~~~i~~~   60 (119)
                      -+++|.-=|.|+-..++-+   |+.+..+|+|.+|.++++.|++++..+
T Consensus        93 HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~  141 (386)
T COG1104          93 HIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPD  141 (386)
T ss_pred             eEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCC
Confidence            4677888899999999887   999999999999999999999999653

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=88.37  E-value=2  Score=33.50  Aligned_cols=47  Identities=17%  Similarity=0.279  Sum_probs=41.1

Q ss_pred             CCccEEeecCcchHHHHHHhcC----ceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          64 GKIPFYVNQAHSSVERAGLLGG----VTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        64 g~~p~~v~~t~gst~~~a~~~g----~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      |-.+++....|+++..+..++|    .+++.+++++++.+|.++|++++..
T Consensus       108 gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  158 (398)
T cd00613         108 RNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSE  158 (398)
T ss_pred             CCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCC
Confidence            6677788899999999999998    8999999988889999999998843

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=87.98  E-value=0.6  Score=35.93  Aligned_cols=48  Identities=42%  Similarity=0.564  Sum_probs=37.9

Q ss_pred             eeeeecCCccccHHHHHh---ccCceeEEeecCCCcccCHHHHHHHHHHHH
Q psy9815          14 LVGYCSDQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEEDL   61 (119)
Q Consensus        14 lvv~~s~~~H~S~~ka~~---~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~   61 (119)
                      -.+++.+.+|........   +.|.+++.+++++.|.++++.|++.+.+.-
T Consensus        69 ~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~  119 (290)
T PF01212_consen   69 ESVICADTAHIHFDETGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHG  119 (290)
T ss_dssp             EEEEEETTEHHHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHT
T ss_pred             CceeccccceeeeeccchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhcc
Confidence            456788889987775543   588999999988779999999999998753

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=87.64  E-value=5.1  Score=31.46  Aligned_cols=54  Identities=24%  Similarity=0.318  Sum_probs=45.9

Q ss_pred             hCCCccEEeecCcchHHHHHHhcCceeEEeec--CCCCCcCHHHHHHHHHHHHhCC
Q psy9815          62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPA--DDSYKLRGDALEAAIEEDLKKG  115 (119)
Q Consensus        62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~--d~~~~m~~~~L~~~i~~~~~~G  115 (119)
                      ++|-.+..=..+|.|+--+|--.|+++..||-  -++++++++.-.+.|++...+|
T Consensus        98 ~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~  153 (382)
T COG1103          98 KEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEG  153 (382)
T ss_pred             cCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhcc
Confidence            34544555567899999999999999999985  4789999999999999998886

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=87.56  E-value=2.2  Score=32.85  Aligned_cols=59  Identities=20%  Similarity=0.219  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      .+...+......|-.+++..-++......+...|++++.+++++++.+|++.|++++.+
T Consensus        93 ~i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~  151 (356)
T PRK04870         93 LIQLLALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAE  151 (356)
T ss_pred             HHHHHHHHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhc
Confidence            33333333334555566667777778888999999999999998899999999999864

>TIGR02006 IscS cysteine desulfurase IscS

Probab=87.48  E-value=1.5  Score=34.68  Aligned_cols=45  Identities=22%  Similarity=0.176  Sum_probs=36.8

Q ss_pred             eeeeecCCccccHHHHHhc---cCceeEEeecCCCcccCHHHHHHHHH
Q psy9815          14 LVGYCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIE   58 (119)
Q Consensus        14 lvv~~s~~~H~S~~ka~~~---~G~~~~~v~~d~~~~m~~~~L~~~i~   58 (119)
                      -.++++...|.|...+...   .|+.++.+|+++++.++++.|++.+.
T Consensus        93 ~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~  140 (402)
T TIGR02006        93 NHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIR  140 (402)
T ss_pred             CEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcC
Confidence            4577788899998777543   48899999999889999999998874

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=87.37  E-value=2  Score=33.59  Aligned_cols=49  Identities=22%  Similarity=0.318  Sum_probs=43.0

Q ss_pred             eeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHHHHHhCC
Q psy9815          16 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEEDLKKG   64 (119)
Q Consensus        16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~~~~~~g   64 (119)
                      +...+.+||+..-||.-.|+++..||..+  .++++++...+.+++...++
T Consensus       103 vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~  153 (382)
T COG1103         103 VVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEG  153 (382)
T ss_pred             EEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhcc
Confidence            45678999999999999999999999654  69999999999999987765

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=87.26  E-value=3.1  Score=32.14  Aligned_cols=59  Identities=12%  Similarity=0.188  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      .|...+......|-.+++..-+.+.....+...|.+++.++.++++.+|.+.|++++..
T Consensus        88 ~l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~  146 (351)
T PRK14807         88 IIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEK  146 (351)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhc
Confidence            33444444344555556666666777778889999999999998899999999998864

>TIGR02006 IscS cysteine desulfurase IscS

Probab=86.90  E-value=2.8  Score=33.10  Aligned_cols=48  Identities=23%  Similarity=0.272  Sum_probs=38.5

Q ss_pred             CCCccEEeecCcchHHHHHHh---cCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          63 KGKIPFYVNQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        63 ~g~~p~~v~~t~gst~~~a~~---~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      .|-.+++....|.++......   .|++++.|++++++.+|.+.|++++.+
T Consensus        91 ~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~  141 (402)
T TIGR02006        91 KGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIRD  141 (402)
T ss_pred             CCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence            455667777889887766543   489999999999999999999998853

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=86.78  E-value=2.8  Score=33.36  Aligned_cols=59  Identities=19%  Similarity=0.178  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      ++|.-.+......|-.+++..-+++.....+...|++++.|++|+++ ++.++|+++++.
T Consensus       152 ~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g-~~~~~l~~~~~~  210 (431)
T PRK15481        152 DAIERLLCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEG-MQPEKLERALAQ  210 (431)
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCCC-CCHHHHHHHHhc
Confidence            44555555545566666777778888889999999999999998765 999999998854

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=86.76  E-value=2.3  Score=32.39  Aligned_cols=59  Identities=25%  Similarity=0.232  Sum_probs=46.8

Q ss_pred             HHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~  109 (119)
                      .++..++... ...|-.+++...+|.++..++...|++++.+++++ ++.+|.+.|++++.
T Consensus        44 ~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~  104 (352)
T cd00616          44 AALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDIDPDTYNIDPELIEAAIT  104 (352)
T ss_pred             HHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecCCCcCCcCHHHHHHhcC
Confidence            3455555444 24556678888899999999999999999999987 79999999998874

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=86.74  E-value=2.5  Score=33.42  Aligned_cols=60  Identities=22%  Similarity=0.159  Sum_probs=46.3

Q ss_pred             HHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L~~~i~~  110 (119)
                      ++|.-++... ...|-.+++..-++.++..+....|++++.+++|++ +.+|+++|++++..
T Consensus        57 ~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~  118 (376)
T TIGR02379        57 AALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITH  118 (376)
T ss_pred             HHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc
Confidence            3444444333 345666777888899999999999999999999866 78999999998864

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=86.37  E-value=2.6  Score=33.22  Aligned_cols=78  Identities=18%  Similarity=0.097  Sum_probs=54.6

Q ss_pred             HHHhccCceeEEeecCCCcccCHHHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHHH
Q psy9815          28 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALE  105 (119)
Q Consensus        28 ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L~  105 (119)
                      +-+...|..- .+.+. ++   ..+|.-++... ...|-.+++..-++.++..++...|++++.+++|++ +.+|++.|+
T Consensus        41 ~la~~~g~~~-~v~~~-sg---t~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~  115 (379)
T PRK11658         41 AFCQLTGNQH-AIAVS-SA---TAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIE  115 (379)
T ss_pred             HHHHHhCCCe-EEEEC-CH---HHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHH
Confidence            3356677642 12222 11   25566565554 456667777888999999999999999999999754 579999999


Q ss_pred             HHHHH
Q psy9815         106 AAIEE  110 (119)
Q Consensus       106 ~~i~~  110 (119)
                      +++..
T Consensus       116 ~~i~~  120 (379)
T PRK11658        116 AAITP  120 (379)
T ss_pred             Hhccc
Confidence            98853

>PLN02721 threonine aldolase

Probab=86.31  E-value=2.5  Score=32.21  Aligned_cols=48  Identities=27%  Similarity=0.365  Sum_probs=38.0

Q ss_pred             CCCccEEeecCcchHHH---HHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          63 KGKIPFYVNQAHSSVER---AGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        63 ~g~~p~~v~~t~gst~~---~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      .|-.+++...+|.+...   .+...|++++.++.++++.+|+++|+++|++
T Consensus        79 ~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  129 (353)
T PLN02721         79 RGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRP  129 (353)
T ss_pred             CCCeEEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHh
Confidence            55556666777766655   3567788999999999999999999999974

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=85.91  E-value=4.6  Score=30.91  Aligned_cols=52  Identities=29%  Similarity=0.339  Sum_probs=43.7

Q ss_pred             CeeeeecCCccccHHHHHhccCceeEEeecC--CCcccCHHHHHHHHHHHHhCC
Q psy9815          13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEEDLKKG   64 (119)
Q Consensus        13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d--~~~~m~~~~L~~~i~~~~~~g   64 (119)
                      .-.+++.+-.|......+...|..++.+|.+  +++.++++.|++.+++...++
T Consensus        93 ~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~  146 (363)
T PF00155_consen   93 GDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKG  146 (363)
T ss_dssp             TSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTT
T ss_pred             cccceecCCccccccccccccCceeeeccccccccccccccccccccccccccc
Confidence            3357777888999999999999999998854  689999999999999876665

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=85.87  E-value=3  Score=32.40  Aligned_cols=47  Identities=23%  Similarity=0.247  Sum_probs=36.0

Q ss_pred             CCccEEeecCcchHHHHHHh---cCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          64 GKIPFYVNQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        64 g~~p~~v~~t~gst~~~a~~---~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +-.+++....|.+.......   .|++++.++++++|.+|.+.|++++.+
T Consensus        86 ~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~  135 (379)
T TIGR03402        86 KRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITD  135 (379)
T ss_pred             CCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence            44556667777777654433   599999999998899999999998853

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=85.63  E-value=3.5  Score=32.12  Aligned_cols=58  Identities=16%  Similarity=0.141  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          53 LEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        53 L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      |...+......|-.+++..-+++.....+...|++++.++.++++.++.++|++.+.+
T Consensus       101 l~~~~~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~  158 (371)
T PRK05166        101 IAVICRAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVAR  158 (371)
T ss_pred             HHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhc
Confidence            3333333334554555556677777788889999999999998899999999998854

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=85.28  E-value=1.3  Score=35.33  Aligned_cols=45  Identities=22%  Similarity=0.250  Sum_probs=37.7

Q ss_pred             CeeeeecCCccccHHHHHhc----cCceeEEeecCCCcccCHHHHHHHHH
Q psy9815          13 NLVGYCSDQAHSSVERAGLL----GGVTIRGLPADDSYKLRGDALEAAIE   58 (119)
Q Consensus        13 ~lvv~~s~~~H~S~~ka~~~----~G~~~~~v~~d~~~~m~~~~L~~~i~   58 (119)
                      +-.+++++..|.+..+++..    .|++++.+|++++ +++.+.|++++.
T Consensus       154 g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~  202 (447)
T PRK00451        154 RKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVD  202 (447)
T ss_pred             CCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcC
Confidence            34577889999999888765    5889999999888 999999998874

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=84.95  E-value=3.7  Score=32.08  Aligned_cols=60  Identities=18%  Similarity=0.181  Sum_probs=46.9

Q ss_pred             HHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~~  110 (119)
                      .+|.-++... ...|-.+++..-++.++..++...|++++.+++++ ++.+|.+.|++++.+
T Consensus        55 ~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~  116 (380)
T TIGR03588        55 SALHIACLALGVGPGDRVWTTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAA  116 (380)
T ss_pred             HHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhc
Confidence            5566665554 34565667777888888899999999999999964 688999999999974

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=84.93  E-value=1.2  Score=34.85  Aligned_cols=46  Identities=26%  Similarity=0.215  Sum_probs=36.3

Q ss_pred             eeeeecCCccccH----HHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          14 LVGYCSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        14 lvv~~s~~~H~S~----~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      -.+++++..|.|.    .+++...|..++.+|+++++.++++.|++.+.+
T Consensus       109 ~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~  158 (403)
T TIGR01979       109 DEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTE  158 (403)
T ss_pred             CEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhcc
Confidence            3567778777774    356667899999999998899999999888743

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=84.91  E-value=1.9  Score=33.61  Aligned_cols=47  Identities=19%  Similarity=0.131  Sum_probs=37.4

Q ss_pred             CeeeeecCCccccHHHHHhccCceeEEeecC-CCcccCHHHHHHHHHH
Q psy9815          13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEE   59 (119)
Q Consensus        13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d-~~~~m~~~~L~~~i~~   59 (119)
                      .--|+++..+..+...+....|...+-+.+| +++.||++.|++++..
T Consensus        65 gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~  112 (363)
T PF01041_consen   65 GDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITP  112 (363)
T ss_dssp             TSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHT
T ss_pred             CceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhcc
Confidence            3457788999999999999999999999998 7899999999999864

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=84.87  E-value=9.4  Score=26.88  Aligned_cols=86  Identities=21%  Similarity=0.176  Sum_probs=57.6

Q ss_pred             cCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEe
Q psy9815          12 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGL   91 (119)
Q Consensus        12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v   91 (119)
                      ++..++......+....-..++|+++...+.++     .+.++..+.+.+.+|...+  ++.. .+...|.-.|+....+
T Consensus        78 ~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~~-----~~e~~~~i~~~~~~G~~vi--VGg~-~~~~~A~~~gl~~v~i  149 (176)
T PF06506_consen   78 PKIAVVGYPNIIPGLESIEELLGVDIKIYPYDS-----EEEIEAAIKQAKAEGVDVI--VGGG-VVCRLARKLGLPGVLI  149 (176)
T ss_dssp             SEEEEEEESS-SCCHHHHHHHHT-EEEEEEESS-----HHHHHHHHHHHHHTT--EE--EESH-HHHHHHHHTTSEEEES
T ss_pred             CcEEEEecccccHHHHHHHHHhCCceEEEEECC-----HHHHHHHHHHHHHcCCcEE--ECCH-HHHHHHHHcCCcEEEE
Confidence            566667777777778888899999888887654     5889999999999985543  3333 3456667789887777


Q ss_pred             ecCCCCCcCHHHHHHHHHHH
Q psy9815          92 PADDSYKLRGDALEAAIEED  111 (119)
Q Consensus        92 ~~d~~~~m~~~~L~~~i~~~  111 (119)
                      .+.      .++++++|++.
T Consensus       150 ~sg------~esi~~Al~eA  163 (176)
T PF06506_consen  150 ESG------EESIRRALEEA  163 (176)
T ss_dssp             S--------HHHHHHHHHHH
T ss_pred             Eec------HHHHHHHHHHH
Confidence            553      35666666554

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=84.43  E-value=3.9  Score=32.05  Aligned_cols=49  Identities=20%  Similarity=0.171  Sum_probs=42.0

Q ss_pred             hCCCccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHHHHHHHH
Q psy9815          62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE  110 (119)
Q Consensus        62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L~~~i~~  110 (119)
                      ..|-.+++..-++.++..++...|++++.+++|++ +.+|+++|++++.+
T Consensus        69 ~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~  118 (375)
T PRK11706         69 QPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITP  118 (375)
T ss_pred             CCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCC
Confidence            45666788888999999999999999999999866 58999999998853

>cd00609 AAT_like Aspartate aminotransferase family

Probab=84.38  E-value=2.2  Score=31.90  Aligned_cols=37  Identities=19%  Similarity=0.130  Sum_probs=32.5

Q ss_pred             eeeeecCCccccHHHHHhccCceeEEeecCCCcccCH
Q psy9815          14 LVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRG   50 (119)
Q Consensus        14 lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~   50 (119)
                      -.+++++..|.+..+++...|.++..+++++++.++.
T Consensus        84 ~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  120 (350)
T cd00609          84 DEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLL  120 (350)
T ss_pred             CEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCcc
Confidence            4577888999999999999999999999998887776

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK06836 aspartate aminotransferase; Provisional

Probab=84.28  E-value=4.4  Score=31.87  Aligned_cols=60  Identities=25%  Similarity=0.191  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L~~~i~~  110 (119)
                      +.|...+......|-.+++..-+++.....+...|++++.++++++ +.+|.+.|++++..
T Consensus       107 ~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~  167 (394)
T PRK06836        107 GALNVALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITP  167 (394)
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCc
Confidence            3444444444445555666777777777788889999999999876 88999999998853

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=84.15  E-value=5.8  Score=30.60  Aligned_cols=60  Identities=15%  Similarity=0.096  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchH--HHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst--~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      ..+...+......|-..++........  ...+...|++++.|+.++++.+|.++|++++.+
T Consensus        67 ~~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~  128 (368)
T PRK13479         67 FSVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAA  128 (368)
T ss_pred             HHHHHHHHhccCCCCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHh
Confidence            445555555444443334433333333  467788899999999988889999999999864

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=84.03  E-value=2.8  Score=31.89  Aligned_cols=44  Identities=25%  Similarity=0.200  Sum_probs=38.1

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE   58 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~   58 (119)
                      .++.+...|.+...++...|.+++.++.++ ++.++.+.|++.+.
T Consensus        60 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~  104 (352)
T cd00616          60 EVIVPSFTFVATANAILLLGATPVFVDIDPDTYNIDPELIEAAIT  104 (352)
T ss_pred             EEEeCCcchHHHHHHHHHcCCeEEEEecCCCcCCcCHHHHHHhcC
Confidence            577888999999999999999999999887 78999999988763

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=83.99  E-value=3.7  Score=31.64  Aligned_cols=60  Identities=27%  Similarity=0.272  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHH----HHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVER----AGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~----~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +.+...+......|-.+++....|+++..    .+...|.+++.++.++++.+|.+.|++++.+
T Consensus        73 ~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~  136 (376)
T TIGR01977        73 TALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKT  136 (376)
T ss_pred             HHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCC
Confidence            34555555444556667777777877653    3445599999999998899999999998853

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=83.85  E-value=4.4  Score=31.39  Aligned_cols=57  Identities=21%  Similarity=0.260  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHhCC-CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHH
Q psy9815          52 ALEAAIEEDLKKG-KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAI  108 (119)
Q Consensus        52 ~L~~~i~~~~~~g-~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i  108 (119)
                      .|.-.+......| -.+++..-+++.....+...|+++..++.++++.+|.++|++++
T Consensus        86 ~i~~~~~~~~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~  143 (351)
T PRK01688         86 GIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLDNWQLDLPAIADNL  143 (351)
T ss_pred             HHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHHhc
Confidence            3333333333343 45666667888888889999999999999888999999998876

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=83.83  E-value=1.5  Score=33.19  Aligned_cols=44  Identities=34%  Similarity=0.522  Sum_probs=34.5

Q ss_pred             eeeecCCccccHHHH---HhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERA---GLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~ka---~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .+++++..|++..++   +.+.|++++.+|.+. +.++.+.|++++.+
T Consensus        73 ~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~  119 (338)
T cd06502          73 SVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRP  119 (338)
T ss_pred             eEEEecCcceeeecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhc
Confidence            466788899887653   456899999998865 78999999998864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=83.75  E-value=4.3  Score=31.04  Aligned_cols=53  Identities=28%  Similarity=0.378  Sum_probs=45.9

Q ss_pred             CCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHHHHHhCC
Q psy9815          63 KGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEEDLKKG  115 (119)
Q Consensus        63 ~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~~~~~~G  115 (119)
                      .|-.+++..-++......+...|++++.++.+  +++.+|++.|++.+++...++
T Consensus        92 ~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~  146 (363)
T PF00155_consen   92 PGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKG  146 (363)
T ss_dssp             TTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTT
T ss_pred             ccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccc
Confidence            55667888889999999999999999999964  789999999999999876655

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PLN02651 cysteine desulfurase

Probab=83.47  E-value=3.7  Score=31.83  Aligned_cols=49  Identities=24%  Similarity=0.204  Sum_probs=38.1

Q ss_pred             hCCCccEEeecCcchHHHHHH---hcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          62 KKGKIPFYVNQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        62 ~~g~~p~~v~~t~gst~~~a~---~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      ..|-.+++....|.++.....   ..|++++.+++++++.+|.+.|+++|++
T Consensus        86 ~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~  137 (364)
T PLN02651         86 DKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRP  137 (364)
T ss_pred             CCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence            345566777788888765544   3588999999998999999999999864

>PRK08361 aspartate aminotransferase; Provisional

Probab=83.46  E-value=4.1  Score=31.93  Aligned_cols=60  Identities=17%  Similarity=0.170  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~~  110 (119)
                      +++.-.+......|-.+++..-++......+...|++++.+++++  ++.+|+++|++.++.
T Consensus       104 ~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~  165 (391)
T PRK08361        104 EATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITK  165 (391)
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc
Confidence            344444444444566677777888888888999999999999875  468999999998864

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=83.28  E-value=2.8  Score=32.52  Aligned_cols=45  Identities=24%  Similarity=0.206  Sum_probs=35.4

Q ss_pred             eeeeecCCccccHHHHHhc---cCceeEEeecCCCcccCHHHHHHHHH
Q psy9815          14 LVGYCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIE   58 (119)
Q Consensus        14 lvv~~s~~~H~S~~ka~~~---~G~~~~~v~~d~~~~m~~~~L~~~i~   58 (119)
                      -.++++...|.|.......   .|+.++.+|.++++.++++.|++.+.
T Consensus        87 ~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~  134 (379)
T TIGR03402        87 RHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAIT  134 (379)
T ss_pred             CeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcC
Confidence            3566778888877654433   58999999998889999999998874

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK12414 putative aminotransferase; Provisional

Probab=83.14  E-value=5  Score=31.45  Aligned_cols=60  Identities=23%  Similarity=0.273  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~~  110 (119)
                      +.|.-.+......|-.+++..-++......+...|.+++.++.++ ++.+|.+.|+++++.
T Consensus       101 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~  161 (384)
T PRK12414        101 EGLYAAISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITP  161 (384)
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCc
Confidence            445555555455666677778888888888899999999999874 578999999998853

>PTZ00377 alanine aminotransferase; Provisional

Probab=82.54  E-value=9.3  Score=31.06  Aligned_cols=62  Identities=15%  Similarity=0.075  Sum_probs=45.0

Q ss_pred             HHHHHHHHHH-hCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHHHHHh
Q psy9815          52 ALEAAIEEDL-KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEEDLK  113 (119)
Q Consensus        52 ~L~~~i~~~~-~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~~~~~  113 (119)
                      +|.-.+.... ..|-.+++..-++......+...|.+++.|++++  ++.+|+++|++++.....
T Consensus       150 al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~  214 (481)
T PTZ00377        150 GIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVR  214 (481)
T ss_pred             HHHHHHHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHh
Confidence            3444444333 3555566667777888888899999999999864  368999999999976443

>PRK05957 aspartate aminotransferase; Provisional

Probab=82.51  E-value=5.9  Score=31.07  Aligned_cols=59  Identities=27%  Similarity=0.243  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      .|.-.+......|-.+++..-++..........|++++.++.++++.+|.++|+++++.
T Consensus       101 ~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  159 (389)
T PRK05957        101 AFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITP  159 (389)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCc
Confidence            34333333334554455555566667777788999999999998899999999998853

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=82.46  E-value=6  Score=30.37  Aligned_cols=48  Identities=17%  Similarity=0.122  Sum_probs=37.3

Q ss_pred             hCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815          62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  109 (119)
Q Consensus        62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~  109 (119)
                      ..|-.+++..-+++.....+...|++++.++.++++.++.++|++++.
T Consensus       109 ~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~  156 (361)
T PRK00950        109 DPGDEVIIPTPTFSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAIT  156 (361)
T ss_pred             CCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhc
Confidence            344445555556666777788899999999988888999999999875

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=82.37  E-value=3.3  Score=32.35  Aligned_cols=44  Identities=16%  Similarity=0.203  Sum_probs=36.9

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE   58 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~   58 (119)
                      .|+.+...|.+...++...|..++.++.+. ++.++++.|++.+.
T Consensus        71 ~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~  115 (380)
T TIGR03588        71 RVWTTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLA  115 (380)
T ss_pred             EEEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhh
Confidence            366777888888888888999999998864 68899999998886

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=82.29  E-value=5.2  Score=31.25  Aligned_cols=49  Identities=27%  Similarity=0.251  Sum_probs=37.9

Q ss_pred             hCCCccEEeecCcchHH----HHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          62 KKGKIPFYVNQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        62 ~~g~~p~~v~~t~gst~----~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      ..|-.+++....|.++.    ..+...|++++.++++++|.++.+.|++++.+
T Consensus       106 ~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~  158 (403)
T TIGR01979       106 KAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTE  158 (403)
T ss_pred             CCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhcc
Confidence            34555666666776653    55667899999999999999999999998854

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=81.89  E-value=3.2  Score=31.41  Aligned_cols=58  Identities=29%  Similarity=0.382  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHhCCCccEEeecCcchHHHH---HHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          52 ALEAAIEEDLKKGKIPFYVNQAHSSVERA---GLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~---a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      ++.-.+......|-.+++...+|.++..+   +.+.|++++.++.++ +.+|.++|++++++
T Consensus        59 a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~  119 (338)
T cd06502          59 ANQLALAAHTQPGGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRP  119 (338)
T ss_pred             HHHHHHHHhcCCCCeEEEecCcceeeecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhc
Confidence            44445544445566677778888776543   456899999999865 78999999999975

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=81.87  E-value=7.6  Score=29.91  Aligned_cols=60  Identities=17%  Similarity=0.089  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhCCC-ccEEeecCcchH-HHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGK-IPFYVNQAHSSV-ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~-~p~~v~~t~gst-~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      ..+...+......|- +.+.....++.. ...+...|++++.+++++++.+|++.|++++.+
T Consensus        65 ~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  126 (363)
T TIGR02326        65 FAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAA  126 (363)
T ss_pred             HHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhh
Confidence            455555544433432 333445555663 566778899999999999999999999999875

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK02948 cysteine desulfurase; Provisional

Probab=81.76  E-value=6.7  Score=30.45  Aligned_cols=48  Identities=27%  Similarity=0.205  Sum_probs=37.1

Q ss_pred             CCCccEEeecCcchHHHHH---HhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          63 KGKIPFYVNQAHSSVERAG---LLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        63 ~g~~p~~v~~t~gst~~~a---~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      .|-.+++....|.|.....   ...|++++.+++++++.+|.+.|++++++
T Consensus        87 ~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~  137 (381)
T PRK02948         87 NKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITP  137 (381)
T ss_pred             CCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCC
Confidence            3455666667788876654   44688999999998899999999998853

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=81.74  E-value=7.7  Score=29.29  Aligned_cols=80  Identities=18%  Similarity=0.073  Sum_probs=54.3

Q ss_pred             HHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC------CCcC
Q psy9815          27 ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS------YKLR  100 (119)
Q Consensus        27 ~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~------~~m~  100 (119)
                      ++++.+.|..-..+-+.  |  ....+...+......|-.+++...+|.|+..+..+.|.+++.++++.+      +.++
T Consensus        66 ~~~A~~~ga~~~~~~~~--G--st~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~  141 (294)
T cd00615          66 ELAARAFGAKHTFFLVN--G--TSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGIAGGIP  141 (294)
T ss_pred             HHHHHHhCCCCEEEEcC--c--HHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCcccCcCCCCC
Confidence            45567777632222122  1  123444555555566777788888999999999999998888876432      4799


Q ss_pred             HHHHHHHHHH
Q psy9815         101 GDALEAAIEE  110 (119)
Q Consensus       101 ~~~L~~~i~~  110 (119)
                      ++.|++++++
T Consensus       142 ~~~l~~~l~~  151 (294)
T cd00615         142 PETFKKALIE  151 (294)
T ss_pred             HHHHHHHHHh
Confidence            9999999975

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PLN02368 alanine transaminase

Probab=81.18  E-value=12  Score=29.94  Aligned_cols=61  Identities=8%  Similarity=0.006  Sum_probs=45.6

Q ss_pred             HHHHHHHHHH-hCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHHHHH
Q psy9815          52 ALEAAIEEDL-KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEEDL  112 (119)
Q Consensus        52 ~L~~~i~~~~-~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~~~~  112 (119)
                      .|..++.... ..|-.+++..=+.......+...|.+++.|++++  ++.+|.++|++++++..
T Consensus       142 al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~  205 (407)
T PLN02368        142 GVMQILNAVIRGEKDGVLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQAR  205 (407)
T ss_pred             HHHHHHHHHcCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHh
Confidence            3444444443 3565667777778888888999999999999864  48899999999997543

>PRK09082 methionine aminotransferase; Validated

Probab=81.17  E-value=7  Score=30.57  Aligned_cols=60  Identities=22%  Similarity=0.179  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC-CCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d-~~~~m~~~~L~~~i~~  110 (119)
                      .+|.-.+......|-.+++..-++++....+...|.++..++.+ +++.+|+++|+++++.
T Consensus       102 ~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~  162 (386)
T PRK09082        102 EALFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISP  162 (386)
T ss_pred             HHHHHHHHHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCc
Confidence            34455554444566667777888889999999999999999996 4689999999988853

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=81.09  E-value=7.8  Score=30.41  Aligned_cols=59  Identities=27%  Similarity=0.277  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHHHHHHHH
Q psy9815          52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE  110 (119)
Q Consensus        52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L~~~i~~  110 (119)
                      ++.-.+......|-.+++..-+++.....+...|.++..++++++ +.+|.+.|++++++
T Consensus       103 al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~  162 (391)
T PRK07309        103 ALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILE  162 (391)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhc
Confidence            344444443445555666677777788888899999999998764 68999999999864

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=80.76  E-value=3.2  Score=31.81  Aligned_cols=44  Identities=7%  Similarity=-0.047  Sum_probs=34.1

Q ss_pred             eeecCCcccc--HHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          16 GYCSDQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        16 v~~s~~~H~S--~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      +++++..|++  ....+...|.+++.+|.++.+.++++.|++.+.+
T Consensus        77 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~  122 (356)
T cd06451          77 VLVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQ  122 (356)
T ss_pred             EEEecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhc
Confidence            4445566776  3466778899999999988889999999988854

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=80.22  E-value=8.3  Score=30.25  Aligned_cols=48  Identities=13%  Similarity=0.162  Sum_probs=37.2

Q ss_pred             hCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815          62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  109 (119)
Q Consensus        62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~  109 (119)
                      ..|-.+++..-+.+.....+...|+++..++.++++.++.++|+++++
T Consensus       125 ~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~  172 (380)
T PLN03026        125 DPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVE  172 (380)
T ss_pred             CCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHh
Confidence            345445555556666667778889999999998889999999999884

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=80.09  E-value=8.8  Score=29.71  Aligned_cols=58  Identities=29%  Similarity=0.337  Sum_probs=44.8

Q ss_pred             HHHHHHHHH---HhCCCccEEeecCcchHH----HHHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815          52 ALEAAIEED---LKKGKIPFYVNQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIE  109 (119)
Q Consensus        52 ~L~~~i~~~---~~~g~~p~~v~~t~gst~----~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~  109 (119)
                      .++..+...   ...|-..+++...|.++.    ..+...|++++.++.+.++.++.+.++++|.
T Consensus        73 a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~  137 (371)
T PF00266_consen   73 ALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALN  137 (371)
T ss_dssp             HHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHH
T ss_pred             hhhhhhhccccccccccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhc
Confidence            555555544   466777888888888887    2333568999999999999999999999995

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
3k40_A	475	Crystal Structure Of Drosophila 3,4-Dihydroxyphenyl		2e-20
4e1o_A	481	Human Histidine Decarboxylase Complex With Histidin		7e-17
4e1o_A	481	Human Histidine Decarboxylase Complex With Histidin		1e-11
3rch_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		8e-16
3rch_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		6e-12
3rbf_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		8e-16
3rbf_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		6e-12
1js3_A	486	Crystal Structure Of Dopa Decarboxylase In Complex		2e-15
1js3_A	486	Crystal Structure Of Dopa Decarboxylase In Complex		5e-11

>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine Decarboxylase Length = 475

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/68 (60%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
Query: 2   HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
           HP+W +  I+  LVGYCSDQAHSSVERAGLLGGV +R + +++ +++RG ALE AIE+D+
Sbjct: 171 HPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSEN-HRMRGAALEKAIEQDV 229
Query: 62  KKGKIPFY 69
            +G IPFY
Sbjct: 230 AEGLIPFY 237

>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine Methyl Ester (Hme) Length = 481

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/70 (52%), Positives = 52/70 (74%)
Query: 1   AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
           + PD  +S + A LV Y SDQAHSSVE+AGL+  V ++ LP DD++ LRG+AL+ AIEED
Sbjct: 176 SEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEED 235
Query: 61  LKKGKIPFYV 70
            ++G +P +V
Sbjct: 236 KQRGLVPVFV 245

>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine Methyl Ester (Hme) Length = 481

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 56  AIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKG 115
           A E  L    + +  +QAHSSVE+AGL+  V ++ LP DD++ LRG+AL+ AIEED ++G
Sbjct: 180 ADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRG 239
Query: 116 KIP 118
            +P
Sbjct: 240 LVP 242

>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Open Conformation With Llp And Plp Bound To Chain-A And Chain- B Respectively Length = 480

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 49/70 (70%)
Query: 1   AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
           A P+   + I+  LV Y SDQAHSSVERAGL+GGV ++ +P+D ++ +R  AL+ A+E D
Sbjct: 170 ASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERD 229
Query: 61  LKKGKIPFYV 70
              G IPF++
Sbjct: 230 KAAGLIPFFM 239

>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Open Conformation With Llp And Plp Bound To Chain-A And Chain- B Respectively Length = 480

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 4/66 (6%)
Query: 54  EAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLK 113
           +AAI E L    + +  +QAHSSVERAGL+GGV ++ +P+D ++ +R  AL+ A+E D  
Sbjct: 176 QAAIMEKL----VAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKA 231
Query: 114 KGKIPF 119
            G IPF
Sbjct: 232 AGLIPF 237

>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Apo Form Length = 480

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 49/70 (70%)
Query: 1   AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
           A P+   + I+  LV Y SDQAHSSVERAGL+GGV ++ +P+D ++ +R  AL+ A+E D
Sbjct: 170 ASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERD 229
Query: 61  LKKGKIPFYV 70
              G IPF++
Sbjct: 230 KAAGLIPFFM 239

>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Apo Form Length = 480

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 4/66 (6%)
Query: 54  EAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLK 113
           +AAI E L    + +  +QAHSSVERAGL+GGV ++ +P+D ++ +R  AL+ A+E D  
Sbjct: 176 QAAIMEKL----VAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKA 231
Query: 114 KGKIPF 119
            G IPF
Sbjct: 232 AGLIPF 237

>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With The Inhibitor Carbidopa Length = 486

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 46/70 (65%)
Query: 1   AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
           A P      ++  LV Y SDQAHSSVERAGL+GGV ++ +P+D  + +R  AL+ A+E D
Sbjct: 170 ASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERD 229
Query: 61  LKKGKIPFYV 70
              G IPF+V
Sbjct: 230 KAAGLIPFFV 239

>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With The Inhibitor Carbidopa Length = 486

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 66  IPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119
           + +  +QAHSSVERAGL+GGV ++ +P+D  + +R  AL+ A+E D   G IPF
Sbjct: 184 VAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPF 237

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	9e-27
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	1e-17
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	5e-26
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	3e-17
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	4e-24
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	5e-21
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	3e-14
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	9e-21
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	6e-14
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	3e-20
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	7e-14
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	9e-06
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	2e-04
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	3e-04

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481

 Score =  101 bits (254), Expect = 9e-27
 Identities = 37/69 (53%), Positives = 51/69 (73%)

Query: 2   HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
            PD  +S + A LV Y SDQAHSSVE+AGL+  V ++ LP DD++ LRG+AL+ AIEED 
Sbjct: 177 EPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDK 236

Query: 62  KKGKIPFYV 70
           ++G +P +V
Sbjct: 237 QRGLVPVFV 245

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481

 Score = 76.3 bits (188), Expect = 1e-17
 Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)

Query: 42  ADDSYKLRGDALEAAIEEDLKKGKIPFYVN-QAHSSVERAGLLGGVTIRGLPADDSYKLR 100
           A  +  L     E   +E     ++  Y + QAHSSVE+AGL+  V ++ LP DD++ LR
Sbjct: 165 ARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLR 224

Query: 101 GDALEAAIEEDLKKGKIPF 119
           G+AL+ AIEED ++G +P 
Sbjct: 225 GEALQKAIEEDKQRGLVPV 243

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486

 Score = 99.8 bits (249), Expect = 5e-26
 Identities = 34/70 (48%), Positives = 46/70 (65%)

Query: 1   AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
           A P      ++  LV Y SDQAHSSVERAGL+GGV ++ +P+D  + +R  AL+ A+E D
Sbjct: 170 ASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERD 229

Query: 61  LKKGKIPFYV 70
              G IPF+V
Sbjct: 230 KAAGLIPFFV 239

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486

 Score = 75.1 bits (185), Expect = 3e-17
 Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 12/123 (9%)

Query: 4   DWKDSDIIANLVGYCSDQAHSSVERAG--LLGGVTIRGLP----ADDSYKLRGDALEAAI 57
           DW     +  ++              G  + G  +   L     A      R  A    +
Sbjct: 120 DW-----LGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGL 174

Query: 58  EEDLKKGKIPFYVN-QAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGK 116
            +     K+  Y + QAHSSVERAGL+GGV ++ +P+D  + +R  AL+ A+E D   G 
Sbjct: 175 TQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGL 234

Query: 117 IPF 119
           IPF
Sbjct: 235 IPF 237

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475

 Score = 94.4 bits (235), Expect = 4e-24
 Identities = 41/69 (59%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 2   HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
           HP+W +  I+  LVGYCSDQAHSSVERAGLLGGV +R +   +++++RG ALE AIE+D+
Sbjct: 171 HPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQ-SENHRMRGAALEKAIEQDV 229

Query: 62  KKGKIPFYV 70
            +G IPFY 
Sbjct: 230 AEGLIPFYA 238

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504

 Score = 85.9 bits (213), Expect = 5e-21
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 9   DIIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGK 65
             +  LV + S+Q+H S+++AG   G     +  +  ++  K+     EA I E  +KG 
Sbjct: 185 AAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGY 244

Query: 66  IPFYVN 71
           +PFYVN
Sbjct: 245 VPFYVN 250

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504

 Score = 66.6 bits (163), Expect = 3e-14
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  QAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119
           Q+H S+++AG   G     +  +  ++  K+     EA I E  +KG +PF
Sbjct: 197 QSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPF 247

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515

 Score = 84.7 bits (210), Expect = 9e-21
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 1   AHPDWKDS--DIIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEA 55
            +PD K      +  L  + S + H S+++     G+   ++R + AD+  K+  + LE 
Sbjct: 189 RYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLER 248

Query: 56  AIEEDLKKGKIPFYVN 71
            I     +G +PF V+
Sbjct: 249 QIGMAEAEGAVPFLVS 264

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515

 Score = 65.5 bits (160), Expect = 6e-14
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  QAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119
           + H S+++     G+   ++R + AD+  K+  + LE  I     +G +PF
Sbjct: 211 ECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPF 261

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497

 Score = 83.5 bits (207), Expect = 3e-20
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 8   SDIIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKG 64
            D    L   CS ++H +V+++    G+    +  + A+    +    L+  I +   +G
Sbjct: 197 PDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEG 256

Query: 65  KIPFYVN 71
            IPF + 
Sbjct: 257 LIPFAIV 263

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497

 Score = 65.4 bits (160), Expect = 7e-14
 Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 72  QAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119
           ++H +V+++    G+    +  + A+    +    L+  I +   +G IPF
Sbjct: 210 KSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPF 260

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score = 42.4 bits (99), Expect = 9e-06
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 17  YCSDQAHSSVERAGLLGG---VTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQA 73
                +H S  +A    G     +  +   D   +  + +E AI+++++ G  P  ++  
Sbjct: 180 IYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTL 239

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 52  ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGG---VTIRGLPADDSYKLRGDALEAAI 108
            L AA ++      I  Y   +H S  +A    G     +  +   D   +  + +E AI
Sbjct: 166 CLSAARKKYGSNVVI--YPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAI 223

Query: 109 EEDLKKGKIP 118
           +++++ G  P
Sbjct: 224 KKEIELGNRP 233

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 17  YCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
                AH++ ++A    G+ +   P D  Y+    A+  AI  +
Sbjct: 196 VVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPN 239

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.09
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	98.98
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	98.83
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	98.71
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	98.58
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	98.54
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	98.49
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	98.15
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	97.9
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	97.89
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	97.88
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	97.56
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	97.5
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	97.46
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	97.37
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	97.35
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	97.3
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	96.43
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	96.27
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	96.04
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	95.86
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	95.68
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	95.39
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	95.35
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	95.34
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	95.3
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	95.01
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	94.97
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	94.95
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	94.73
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	94.62
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	94.56
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	94.52
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	94.48
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	94.27
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	94.18
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	94.1
1o69_A	394	Aminotransferase; structural genomics, unknown fun	94.08
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	93.81
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	93.63
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	93.6
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	93.59
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	93.42
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	93.19
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	93.08
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	93.01
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	92.85
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	92.85
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	92.81
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	92.8
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	92.72
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	92.34
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	92.3
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	92.2
3nra_A	407	Aspartate aminotransferase; structural genomics, j	92.1
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	92.03
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	91.95
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	91.94
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	91.81
3rq1_A	418	Aminotransferase class I and II; structural genomi	91.73
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	91.67
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	91.64
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	91.24
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	91.19
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	91.15
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	91.09
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	91.08
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	91.05
1svv_A	359	Threonine aldolase; structural genomics, structura	90.96
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	90.92
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	90.91
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	90.9
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	90.89
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	90.88
1vp4_A	425	Aminotransferase, putative; structural genomics, j	90.86
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	90.74
2fnu_A	375	Aminotransferase; protein-product complex, structu	90.69
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	90.68
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	90.64
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	90.57
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	90.32
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	90.13
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	90.08
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	90.07
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	90.03
1o69_A	394	Aminotransferase; structural genomics, unknown fun	89.96
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	89.91
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	89.62
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	89.51
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	89.27
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	89.0
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	88.65
3nra_A	407	Aspartate aminotransferase; structural genomics, j	88.6
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	88.56
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	88.48
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	88.27
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	88.06
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	88.04
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	88.01
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	87.98
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	87.88
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	87.81
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	87.48
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	87.42
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	87.39
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	87.38
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	87.28
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	87.21
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	87.2
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	87.17
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	87.11
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	87.07
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	87.0
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	86.92
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	86.74
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	86.69
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	86.67
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	86.25
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	86.11
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	86.06
3ele_A	398	Amino transferase; RER070207001803, structural gen	85.87
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	85.52
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	85.51
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	85.5
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	85.39
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	85.39
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	85.36
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	85.19
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	85.15
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	85.13
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	85.12
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	85.07
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	85.06
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	85.05
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	85.05
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	85.04
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	85.03
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	85.03
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	84.81
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	84.81
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	84.46
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	84.34
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	84.26
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	84.02
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	83.82
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	83.48
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	83.26
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	83.09
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	83.0
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	82.99
3rq1_A	418	Aminotransferase class I and II; structural genomi	82.96
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	82.84
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	82.81
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	82.46
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	82.4
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	82.18
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	82.14
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	81.93
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	81.89
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	81.82
1svv_A	359	Threonine aldolase; structural genomics, structura	81.76
2fnu_A	375	Aminotransferase; protein-product complex, structu	81.44
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	81.4
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	81.18
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	81.14
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	81.05
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	80.93
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	80.93
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	80.87
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	80.83
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	80.65
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	80.58
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	80.47
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	80.38
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	80.33
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	80.06
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	80.03

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.09  E-value=7.5e-11  Score=93.60  Aligned_cols=78  Identities=47%  Similarity=0.745  Sum_probs=70.0

Q ss_pred             CCCCccccccCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHH
Q psy9815           3 PDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERA   80 (119)
Q Consensus         3 p~~~~~~~~~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~   80 (119)
                      |++.+.+..+++++|+|+.+|+|+.|++.++|.+++.||+|++++||+++|+++++++...|..|++++.++|++.+|
T Consensus       178 ~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G  255 (481)
T 4e1o_A          178 PDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVC  255 (481)
T ss_dssp             TTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTC
T ss_pred             cccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCc
Confidence            444444556789999999999999999999999999999999999999999999999888888999999999998866

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=98.98  E-value=2.2e-10  Score=90.91  Aligned_cols=78  Identities=51%  Similarity=0.949  Sum_probs=68.7

Q ss_pred             CCCCccccccCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHH
Q psy9815           3 PDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAG   81 (119)
Q Consensus         3 p~~~~~~~~~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a   81 (119)
                      |++++.+..+++++|+|+..|+|+.|++.++|++++.||+|+++ ||+++|++++.++...|..|++++.++||+.+|.
T Consensus       172 ~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~  249 (475)
T 3k40_A          172 PEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCA  249 (475)
T ss_dssp             TTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCC
T ss_pred             cccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcC
Confidence            34444455678899999999999999999999999999999999 9999999999998888888999999999987654

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=98.83  E-value=1.8e-09  Score=85.19  Aligned_cols=69  Identities=46%  Similarity=0.805  Sum_probs=64.0

Q ss_pred             cCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHH
Q psy9815          12 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERA   80 (119)
Q Consensus        12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~   80 (119)
                      +++++|+|+..|+|+.+++..+|+.++.||+|++++||+++|++++.++...|..|++++.++|++.+|
T Consensus       181 ~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG  249 (486)
T 1js3_A          181 EKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCC  249 (486)
T ss_dssp             HHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTC
T ss_pred             CCEEEEECCCCcHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCC
Confidence            467899999999999999999999999999999999999999999999888888999999999988776

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=98.71  E-value=8.8e-09  Score=82.45  Aligned_cols=70  Identities=30%  Similarity=0.439  Sum_probs=64.3

Q ss_pred             cCeeeeecCCccccHHHHHhccCc---eeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHH
Q psy9815          12 ANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAG   81 (119)
Q Consensus        12 ~~lvv~~s~~~H~S~~ka~~~~G~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a   81 (119)
                      ++.++|+|+..|+|+.+++.++|+   +++.||+|++++||+++|+++++++..+|..|.+++.+++++..|.
T Consensus       191 ~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~  263 (511)
T 3vp6_A          191 PKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGA  263 (511)
T ss_dssp             CCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCC
T ss_pred             CCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcc
Confidence            578999999999999999999988   8999999999999999999999999888988999999999887653

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=98.58  E-value=4.5e-08  Score=77.67  Aligned_cols=69  Identities=30%  Similarity=0.444  Sum_probs=62.3

Q ss_pred             CeeeeecCCccccHHHHHhccCc---eeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHH
Q psy9815          13 NLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAG   81 (119)
Q Consensus        13 ~lvv~~s~~~H~S~~ka~~~~G~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a   81 (119)
                      ++.+|+|+..|+|+.|++..+|+   +++.||++++++||+++|++++.++..+|..|.+++.+++++.+|.
T Consensus       189 ~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~  260 (504)
T 2okj_A          189 KLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGA  260 (504)
T ss_dssp             CEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCC
T ss_pred             CeEEEECCcchHHHHHHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCC
Confidence            67899999999999999998877   8999999999999999999999998888888899999999877654

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=98.54  E-value=7.2e-08  Score=76.82  Aligned_cols=70  Identities=23%  Similarity=0.376  Sum_probs=62.7

Q ss_pred             cCeeeeecCCccccHHHHHhccCc---eeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHH
Q psy9815          12 ANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAG   81 (119)
Q Consensus        12 ~~lvv~~s~~~H~S~~ka~~~~G~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a   81 (119)
                      +++.+|+|+..|+|+.+++..+|+   +++.||+|++++||+++|++++.++..+|..|.+++.+++++.+|.
T Consensus       202 ~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~  274 (515)
T 2jis_A          202 PPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGA  274 (515)
T ss_dssp             CCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCC
T ss_pred             CCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCC
Confidence            366899999999999999999888   8999999999999999999999988888878888888998877664

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=98.49  E-value=7.6e-08  Score=76.22  Aligned_cols=70  Identities=19%  Similarity=0.326  Sum_probs=62.2

Q ss_pred             cCeeeeecCCccccHHHHHhccCc---eeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHH
Q psy9815          12 ANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAG   81 (119)
Q Consensus        12 ~~lvv~~s~~~H~S~~ka~~~~G~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a   81 (119)
                      ++..+|+|+..|+|+.+++..+|+   +++.||+|++++||+++|+++++++..+|..|++++.+++++.+|.
T Consensus       201 g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~  273 (497)
T 2qma_A          201 DKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGA  273 (497)
T ss_dssp             GGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCC
T ss_pred             CCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCC
Confidence            467899999999999999998877   7999999999999999999999988777877888888999887654

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=98.15  E-value=3.1e-06  Score=66.93  Aligned_cols=57  Identities=47%  Similarity=0.778  Sum_probs=52.4

Q ss_pred             CCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815          63 KGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF  119 (119)
Q Consensus        63 ~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~pf  119 (119)
                      .+.+++++..+|.|+.+++.+.|.+++.|++|++|+||+++|+++|+++.++|+.|+
T Consensus       187 ~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~  243 (481)
T 4e1o_A          187 ARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPV  243 (481)
T ss_dssp             TTEEEEEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCeEEEEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcE
Confidence            456788999999999999999999999999999999999999999999998887764

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=97.90  E-value=3.3e-05  Score=61.66  Aligned_cols=56  Identities=29%  Similarity=0.401  Sum_probs=51.1

Q ss_pred             CCccEEeecCcchHHHHHHhcCc---eeEEeecCCCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815          64 GKIPFYVNQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF  119 (119)
Q Consensus        64 g~~p~~v~~t~gst~~~a~~~g~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~pf  119 (119)
                      +..++++..+|.|+.+++.++|+   +++.|++|++|+||+++|+++|+++.++|..|+
T Consensus       192 ~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~  250 (511)
T 3vp6_A          192 KLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPF  250 (511)
T ss_dssp             CEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEE
T ss_pred             CeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcE
Confidence            45688889999999999999999   999999999999999999999999998887663

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=97.89  E-value=1.4e-05  Score=62.81  Aligned_cols=55  Identities=47%  Similarity=0.866  Sum_probs=49.8

Q ss_pred             CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815          65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF  119 (119)
Q Consensus        65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~pf  119 (119)
                      .++++...+|.++.+++.++|++++.|++|++|+||+++|+++|+++.++|..||
T Consensus       183 ~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~  237 (486)
T 1js3_A          183 LVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPF  237 (486)
T ss_dssp             EEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             EEEEECCCCcHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCce
Confidence            3467788999999999999999999999999999999999999999988887663

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=97.88  E-value=8.3e-06  Score=64.54  Aligned_cols=55  Identities=53%  Similarity=0.872  Sum_probs=50.3

Q ss_pred             CCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815          64 GKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF  119 (119)
Q Consensus        64 g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~pf  119 (119)
                      +.++++...+|.|+.+++.+.|++++.|++|++| ||+++|+++|+++.++|..|+
T Consensus       182 ~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~  236 (475)
T 3k40_A          182 KLVGYCSDQAHSSVERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPF  236 (475)
T ss_dssp             HEEEEEETTSCHHHHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEE
T ss_pred             CeEEEECCCchHHHHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccE
Confidence            3568899999999999999999999999999999 999999999999988887663

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=97.56  E-value=0.0001  Score=58.31  Aligned_cols=53  Identities=28%  Similarity=0.399  Sum_probs=48.2

Q ss_pred             ccEEeecCcchHHHHHHhcCc---eeEEeecCCCCCcCHHHHHHHHHHHHhCCCCC
Q psy9815          66 IPFYVNQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIP  118 (119)
Q Consensus        66 ~p~~v~~t~gst~~~a~~~g~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~p  118 (119)
                      .++++..+|.++.+++.++|+   +++.|++|++|+||+++|+++|+++.++|..|
T Consensus       191 ~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~  246 (504)
T 2okj_A          191 VLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVP  246 (504)
T ss_dssp             EEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEE
T ss_pred             EEEECCcchHHHHHHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCc
Confidence            577888899999999999988   89999999999999999999999988888654

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=97.50  E-value=0.00013  Score=57.87  Aligned_cols=53  Identities=25%  Similarity=0.402  Sum_probs=48.1

Q ss_pred             ccEEeecCcchHHHHHHhcCc---eeEEeecCCCCCcCHHHHHHHHHHHHhCCCCC
Q psy9815          66 IPFYVNQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIP  118 (119)
Q Consensus        66 ~p~~v~~t~gst~~~a~~~g~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~p  118 (119)
                      .++++..+|+++.+++.++|+   +++.|++|++|+||+++|+++|+++.++|..|
T Consensus       205 ~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~  260 (515)
T 2jis_A          205 ALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVP  260 (515)
T ss_dssp             EEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEE
T ss_pred             EEEECCCccHHHHHHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCc
Confidence            677788899999999999999   89999999999999999999999988887654

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=97.46  E-value=3.7e-05  Score=59.84  Aligned_cols=61  Identities=11%  Similarity=0.061  Sum_probs=49.3

Q ss_pred             eeeeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHH
Q psy9815          14 LVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAG   81 (119)
Q Consensus        14 lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a   81 (119)
                      ..+++++ .|+++.+++...|+.++.||+++ +++||++.|++++.+      .+.+++.+++++.+|.
T Consensus       141 ~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~  202 (452)
T 2dgk_A          141 PNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDE------NTIGVVPTFGVTYTGN  202 (452)
T ss_dssp             CEEEESS-CCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCT------TEEEEECBBSCTTTCB
T ss_pred             cEEEECC-CcHHHHHHHHHcCceEEEEecCCCCCeECHHHHHHHHhh------CCEEEEEEcCCcCCcc
Confidence            3566778 99999999999999999999987 799999999998854      2466677777665443

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=97.37  E-value=0.00015  Score=57.20  Aligned_cols=53  Identities=17%  Similarity=0.258  Sum_probs=47.4

Q ss_pred             ccEEeecCcchHHHHHHhcCc---eeEEeecCCCCCcCHHHHHHHHHHHHhCCCCC
Q psy9815          66 IPFYVNQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIP  118 (119)
Q Consensus        66 ~p~~v~~t~gst~~~a~~~g~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~p  118 (119)
                      ..++...+|.|+.+++.++|+   +++.||+|++++||+++|+++|+++.++|..|
T Consensus       204 ~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~  259 (497)
T 2qma_A          204 RIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIP  259 (497)
T ss_dssp             EEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEE
T ss_pred             EEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcc
Confidence            577778899999999999988   89999999999999999999999988777654

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=97.35  E-value=6e-05  Score=59.98  Aligned_cols=60  Identities=10%  Similarity=0.069  Sum_probs=48.1

Q ss_pred             eeeeecCCccccHHHHHhccCceeEEeecCCC-cccCHHHHHHHHHHHHhCCCccEEeecCcchHHH
Q psy9815          14 LVGYCSDQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVER   79 (119)
Q Consensus        14 lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~-~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~   79 (119)
                      ..+++|+.+|+|+.+++...|+.++.||++++ ++||++.|++++.+.      +.+++.+++++.+
T Consensus       155 ~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~------t~~v~~~~~~n~t  215 (502)
T 3hbx_A          155 PNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDEN------TICVAAILGSTLN  215 (502)
T ss_dssp             CEEEEETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCTT------EEEEEEEBSCTTT
T ss_pred             cEEEEcCCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhhC------CEEEEEecCCCCC
Confidence            47889999999999999999999999999875 999999999987542      3445555555443

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=97.30  E-value=0.00022  Score=56.81  Aligned_cols=63  Identities=14%  Similarity=0.084  Sum_probs=46.1

Q ss_pred             cCeeeeecCCccccHHHHHhccCceeEEe---ecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchH
Q psy9815          12 ANLVGYCSDQAHSSVERAGLLGGVTIRGL---PADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSV   77 (119)
Q Consensus        12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v---~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst   77 (119)
                      .+.++|+ ..+|.|+.||+.++|+..+.|   +.++.+.||++.|+++++++..+  .+++++.+.+++
T Consensus       144 ~~~viv~-r~aHkSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~--~~~~Vv~t~t~~  209 (450)
T 3bc8_A          144 AKYIIWP-RIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPE--HILCLHSTTACF  209 (450)
T ss_dssp             CCEEEEE-CCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGG--GEEEEEEESSCC
T ss_pred             CCEEEEE-CCcHHHHHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCC--CEEEEEEECCcC
Confidence            3567777 559999999999999964444   44778999999999999887422  345555554443

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=96.43  E-value=0.0026  Score=49.67  Aligned_cols=47  Identities=26%  Similarity=0.299  Sum_probs=38.3

Q ss_pred             CeeeeecCCccccHHHHHhccCceeEEeec---CCCcccCHHHHHHHHHHH
Q psy9815          13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPA---DDSYKLRGDALEAAIEED   60 (119)
Q Consensus        13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~---d~~~~m~~~~L~~~i~~~   60 (119)
                      +.++++ +..|+|+.+++...|+.++.++.   ++++.+|+++|++++++.
T Consensus       177 ~~vi~~-~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~  226 (456)
T 2z67_A          177 NVVIYP-YASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKE  226 (456)
T ss_dssp             CEEEEE-CCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHH
T ss_pred             CEEEEE-CCCcHHHHHHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHH
Confidence            344545 45999999999999998888876   778999999999999543

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=96.27  E-value=0.016  Score=42.85  Aligned_cols=47  Identities=17%  Similarity=0.180  Sum_probs=43.9

Q ss_pred             CCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          64 GKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        64 g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      |-.+++...+|+++..++...|++++.|+.++++.+|+++|++++++
T Consensus       123 gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  169 (397)
T 3f9t_A          123 HPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVED  169 (397)
T ss_dssp             SCEEEEETTCCTHHHHHHHHHTCEEEEECBCTTSSBCHHHHHHHHHH
T ss_pred             CeEEEECCcchhHHHHHHHHcCceeEEEeeCCCCcCCHHHHHHHHhh
Confidence            66788889999999999999999999999999999999999999976

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=96.04  E-value=0.0025  Score=50.32  Aligned_cols=46  Identities=22%  Similarity=0.302  Sum_probs=42.1

Q ss_pred             eeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          14 LVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        14 lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      -.|++++.+|.+..+++...|+.++.||+++++.+|+++|++++.+
T Consensus       193 d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~  238 (514)
T 3mad_A          193 PEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITP  238 (514)
T ss_dssp             CEEEEETTSCTHHHHHHHHHTCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred             CeEEEeCccchHHHHHHHHcCCeeEEeeeCCCCCCCHHHHHHHhcc
Confidence            4688899999999999999999999999999999999999998753

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=95.86  E-value=0.02  Score=45.29  Aligned_cols=45  Identities=9%  Similarity=0.066  Sum_probs=41.3

Q ss_pred             ccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHHHHHHHH
Q psy9815          66 IPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE  110 (119)
Q Consensus        66 ~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L~~~i~~  110 (119)
                      .+++...+|.+..+++.+.|++++.|+++++ |+||+++|+++|++
T Consensus       156 ~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~  201 (502)
T 3hbx_A          156 NIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDE  201 (502)
T ss_dssp             EEEEETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCT
T ss_pred             EEEEcCCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhh
Confidence            6788889999999999999999999999876 99999999999865

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=95.68  E-value=0.019  Score=45.26  Aligned_cols=46  Identities=22%  Similarity=0.297  Sum_probs=42.4

Q ss_pred             CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      -.+++...+|.++.+++...|++++.|++|++++||.++|+++|++
T Consensus       193 d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~  238 (514)
T 3mad_A          193 PEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITP  238 (514)
T ss_dssp             CEEEEETTSCTHHHHHHHHHTCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred             CeEEEeCccchHHHHHHHHcCCeeEEeeeCCCCCCCHHHHHHHhcc
Confidence            4678889999999999999999999999999999999999999864

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=95.39  E-value=0.028  Score=43.41  Aligned_cols=44  Identities=11%  Similarity=0.052  Sum_probs=39.7

Q ss_pred             ccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHHH
Q psy9815          66 IPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  110 (119)
Q Consensus        66 ~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~~  110 (119)
                      .+++.. +|.+..+++.++|++++.|++++ +|+||+++|+++|.+
T Consensus       142 ~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~  186 (452)
T 2dgk_A          142 NLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDE  186 (452)
T ss_dssp             EEEESS-CCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCT
T ss_pred             EEEECC-CcHHHHHHHHHcCceEEEEecCCCCCeECHHHHHHHHhh
Confidence            566777 99999999999999999999987 799999999999864

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=95.35  E-value=0.047  Score=42.63  Aligned_cols=45  Identities=18%  Similarity=0.312  Sum_probs=41.2

Q ss_pred             ccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          66 IPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        66 ~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      .+++...+|+++..++...|++++.|+++++|.+|.++|+++|.+
T Consensus       158 ~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~~  202 (474)
T 1wyu_B          158 VVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELGP  202 (474)
T ss_dssp             EEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCST
T ss_pred             EEEEeCCcChhhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhhCC
Confidence            677788899999999999999999999999999999999999853

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=95.34  E-value=0.029  Score=44.60  Aligned_cols=47  Identities=17%  Similarity=0.092  Sum_probs=40.0

Q ss_pred             ccEEeecCcchHHHHHHhcCceeEEeec---CCCCCcCHHHHHHHHHHHH
Q psy9815          66 IPFYVNQAHSSVERAGLLGGVTIRGLPA---DDSYKLRGDALEAAIEEDL  112 (119)
Q Consensus        66 ~p~~v~~t~gst~~~a~~~g~~~~~v~~---d~~~~m~~~~L~~~i~~~~  112 (119)
                      ..++...+|.|+.+|+.++|+..+.|++   ++.++||+++|+++|+++.
T Consensus       146 ~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~  195 (450)
T 3bc8_A          146 YIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELG  195 (450)
T ss_dssp             EEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHC
T ss_pred             EEEEECCcHHHHHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcC
Confidence            4556678999999999999997666654   7789999999999999875

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=95.30  E-value=0.0016  Score=51.02  Aligned_cols=45  Identities=18%  Similarity=0.246  Sum_probs=41.0

Q ss_pred             eeeeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHH
Q psy9815          14 LVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE   58 (119)
Q Consensus        14 lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~   58 (119)
                      -.+++++..|.+..+++...|+.++.||+++ ++.+|+++|++++.
T Consensus       159 ~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~  204 (497)
T 3mc6_A          159 PEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFIN  204 (497)
T ss_dssp             CEEEEETTSCHHHHHHHHHSCCEEEEECBCTTTCSBCTTTTGGGCC
T ss_pred             ceEEEeCCccHHHHHHHHHcCCeEEEEecCcccCcCCHHHHHHHHh
Confidence            3688899999999999999999999999988 89999999998875

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=95.01  E-value=0.036  Score=40.95  Aligned_cols=47  Identities=17%  Similarity=0.180  Sum_probs=42.5

Q ss_pred             CeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .-.+++++..|.+..+++...|.+++.+|.++++.+|++.|++++.+
T Consensus       123 gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  169 (397)
T 3f9t_A          123 HPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVED  169 (397)
T ss_dssp             SCEEEEETTCCTHHHHHHHHHTCEEEEECBCTTSSBCHHHHHHHHHH
T ss_pred             CeEEEECCcchhHHHHHHHHcCceeEEEeeCCCCcCCHHHHHHHHhh
Confidence            34677889999999999999999999999999999999999999876

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=94.97  E-value=0.11  Score=38.34  Aligned_cols=61  Identities=23%  Similarity=0.212  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEee--cCCCCCcCHHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLP--ADDSYKLRGDALEAAIEED  111 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~--~d~~~~m~~~~L~~~i~~~  111 (119)
                      +++.-++......|-.+++...+|.++..++...|++++.++  .++++.+|+++|++++++.
T Consensus        80 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~  142 (371)
T 2e7j_A           80 EAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEET  142 (371)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhh
Confidence            455555555555666778888899999999999999999999  8888999999999999864

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=94.95  E-value=0.083  Score=40.11  Aligned_cols=61  Identities=25%  Similarity=0.200  Sum_probs=50.7

Q ss_pred             HHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecC-CCCCcCHHHHHHHHHHH
Q psy9815          51 DALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEED  111 (119)
Q Consensus        51 ~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d-~~~~m~~~~L~~~i~~~  111 (119)
                      ++|.-++... ...|-.+++..-+|.++..++...|.+++.++++ +++.+|+++|+++++..
T Consensus        64 ~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~  126 (377)
T 3ju7_A           64 LGLMAAIQLKKRKKGKYALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEEL  126 (377)
T ss_dssp             HHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcC
Confidence            5566666655 5667778888999999999999999999999998 67999999999999543

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=94.73  E-value=0.14  Score=38.27  Aligned_cols=61  Identities=8%  Similarity=0.027  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcch--HHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  111 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gs--t~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~  111 (119)
                      +++.-++......|-.+++...+|.+  ....+...|++++.++.++++.+|+++|+++|++.
T Consensus        73 ~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~  135 (416)
T 3isl_A           73 AGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKKV  135 (416)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhC
Confidence            55666665555566667777788776  66778889999999999999999999999999853

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=94.62  E-value=0.14  Score=38.13  Aligned_cols=61  Identities=10%  Similarity=0.056  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcch--HHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  111 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gs--t~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~  111 (119)
                      +++.-++......|-.+++...+|.+  ....+...|++++.++.++++.+|.++|+++|++.
T Consensus        75 ~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~  137 (411)
T 3nnk_A           75 AGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRI  137 (411)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhC
Confidence            45666666555666677778888866  77888899999999999999999999999999864

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=94.56  E-value=0.16  Score=37.48  Aligned_cols=60  Identities=15%  Similarity=0.146  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcch--HHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gs--t~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++..++......|-.+++...+|.+  ....+...|++++.++.++++.+|.++|++++++
T Consensus        82 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  143 (386)
T 2dr1_A           82 GIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRK  143 (386)
T ss_dssp             HHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhc
Confidence            44555555444556667778888877  7788888999999999999999999999999975

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=94.52  E-value=0.16  Score=37.81  Aligned_cols=60  Identities=17%  Similarity=0.154  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcch--HHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gs--t~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++..++......|-.+++...++.+  ....+...|.+++.+++++++.+|.++|++++++
T Consensus        96 ~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  157 (393)
T 1vjo_A           96 AAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALET  157 (393)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhh
Confidence            45555555555556667777788887  7888889999999999999999999999999976

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=94.48  E-value=0.11  Score=38.01  Aligned_cols=60  Identities=18%  Similarity=0.188  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHH----hCCCccEEeecCcchHHHHHHhc---CceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDL----KKGKIPFYVNQAHSSVERAGLLG---GVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~----~~g~~p~~v~~t~gst~~~a~~~---g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++.-++....    ..|-.+++...+|.++..+...+   |++++.+++++++.+|+++|++++++
T Consensus        71 ~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  137 (382)
T 4hvk_A           71 EANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD  137 (382)
T ss_dssp             HHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred             HHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc
Confidence            34444444443    56667777788999988877764   89999999999999999999998853

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=94.27  E-value=0.2  Score=36.77  Aligned_cols=60  Identities=17%  Similarity=0.187  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++.-++......|-.+++..-++.+...++...|.+++.++.++++.+|+++|++++++
T Consensus        79 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~  138 (354)
T 3ly1_A           79 EGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAA  138 (354)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhcc
Confidence            444445544445566778888899999999999999999999998899999999999973

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=94.18  E-value=0.053  Score=42.34  Aligned_cols=45  Identities=22%  Similarity=0.319  Sum_probs=40.6

Q ss_pred             eeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815          14 LVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE   58 (119)
Q Consensus        14 lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~   58 (119)
                      -.|++++..|.+..+++...|+.++.||+++++.+|+++|++++.
T Consensus       157 ~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~  201 (474)
T 1wyu_B          157 RVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELG  201 (474)
T ss_dssp             CEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCS
T ss_pred             CEEEEeCCcChhhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhhC
Confidence            367778899999999999999999999999899999999999885

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=94.10  E-value=0.27  Score=36.49  Aligned_cols=60  Identities=8%  Similarity=0.034  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++..++......|-.+++...+|.+...++...|.+++.++.++++.+|.++|++++++
T Consensus       103 ~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  162 (369)
T 3cq5_A          103 EILQQLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRA  162 (369)
T ss_dssp             HHHHHHHHHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhc
Confidence            344444444444566677888899999999999999999999988889999999999975

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=94.08  E-value=0.13  Score=38.76  Aligned_cols=60  Identities=20%  Similarity=0.161  Sum_probs=49.8

Q ss_pred             HHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++.-++... ...|-.+++..-+|.++..++...|.+++.++.++++.+|+++|+++|++
T Consensus        58 ~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  118 (394)
T 1o69_A           58 AALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKE  118 (394)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhc
Confidence            5555555554 44566788888999999999999999999999998899999999999975

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=93.81  E-value=0.05  Score=42.41  Aligned_cols=46  Identities=17%  Similarity=0.252  Sum_probs=41.5

Q ss_pred             CccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHHH
Q psy9815          65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  110 (119)
Q Consensus        65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~~  110 (119)
                      -.+++...+|+++.+++...|++++.|++++ ++++|+++|+++|++
T Consensus       159 ~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~  205 (497)
T 3mc6_A          159 PEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINK  205 (497)
T ss_dssp             CEEEEETTSCHHHHHHHHHSCCEEEEECBCTTTCSBCTTTTGGGCCS
T ss_pred             ceEEEeCCccHHHHHHHHHcCCeEEEEecCcccCcCCHHHHHHHHhh
Confidence            3678888999999999999999999999988 899999999998854

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=93.63  E-value=0.15  Score=37.63  Aligned_cols=60  Identities=15%  Similarity=0.216  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++.-++......|-.+++..-++......+...|.+++.++.++++.+|++.|++++++
T Consensus        96 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  155 (367)
T 3euc_A           96 EIISMLALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAE  155 (367)
T ss_dssp             HHHHHHHHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhc
Confidence            344444444444555677778888888888999999999999999999999999999976

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=93.60  E-value=0.23  Score=36.54  Aligned_cols=60  Identities=18%  Similarity=0.207  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHH----hCCCccEEeecCcchHHHHHHh---cCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDL----KKGKIPFYVNQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~----~~g~~p~~v~~t~gst~~~a~~---~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++.-++....    ..|-.+++...+|.++..+...   .|++++.++.++++.+|+++|++++++
T Consensus        71 ~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  137 (382)
T 4eb5_A           71 EANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD  137 (382)
T ss_dssp             HHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred             HHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC
Confidence            34444444443    4566677777888888777665   588999999999999999999998853

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=93.59  E-value=0.26  Score=38.16  Aligned_cols=49  Identities=20%  Similarity=0.291  Sum_probs=40.8

Q ss_pred             CCCccEEeecCcchHHHHHHhcCceeEEeec---CCCCCcCHHHHHHHHHHH
Q psy9815          63 KGKIPFYVNQAHSSVERAGLLGGVTIRGLPA---DDSYKLRGDALEAAIEED  111 (119)
Q Consensus        63 ~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~---d~~~~m~~~~L~~~i~~~  111 (119)
                      .+-.+++....|.++.+++...|++++.|+.   +++|++|+++|+++|+.+
T Consensus       175 ~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~  226 (456)
T 2z67_A          175 GSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKE  226 (456)
T ss_dssp             CCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHH
Confidence            4444566677999999999999999988876   788999999999999543

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=93.42  E-value=0.22  Score=36.55  Aligned_cols=47  Identities=21%  Similarity=0.234  Sum_probs=41.5

Q ss_pred             eeeeecCCccccHHHHHhccCceeEEee--cCCCcccCHHHHHHHHHHH
Q psy9815          14 LVGYCSDQAHSSVERAGLLGGVTIRGLP--ADDSYKLRGDALEAAIEED   60 (119)
Q Consensus        14 lvv~~s~~~H~S~~ka~~~~G~~~~~v~--~d~~~~m~~~~L~~~i~~~   60 (119)
                      -.+++++..|.+...++...|..++.+|  .++++.+|++.|++++.+.
T Consensus        94 d~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~  142 (371)
T 2e7j_A           94 AWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEET  142 (371)
T ss_dssp             CEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHH
T ss_pred             CEEEEccCcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhh
Confidence            3577889999999999999999999999  8888999999999999764

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=93.19  E-value=0.39  Score=35.63  Aligned_cols=60  Identities=17%  Similarity=0.154  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHH--HHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVE--RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~--~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++..++......|-.+++...+|.+..  ..+...|.+++.|+.++++.+|.++|++++++
T Consensus        80 ~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  141 (396)
T 2ch1_A           80 AGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIEL  141 (396)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHh
Confidence            4455555554455666777788888874  47788999999999999999999999999976

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=93.08  E-value=0.29  Score=36.71  Aligned_cols=60  Identities=22%  Similarity=0.184  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHh----CCCccEEeecCcchHHHHHHhc---CceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLK----KGKIPFYVNQAHSSVERAGLLG---GVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~----~g~~p~~v~~t~gst~~~a~~~---g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++.-++.....    .|-.+++...+|.++..++..+   |++++.++.++++.+|+++|++++++
T Consensus        96 ~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  162 (423)
T 3lvm_A           96 ESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRD  162 (423)
T ss_dssp             HHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCC
Confidence            444444443332    4666777788999988888666   99999999999999999999998864

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=93.01  E-value=0.17  Score=37.80  Aligned_cols=46  Identities=7%  Similarity=-0.082  Sum_probs=39.3

Q ss_pred             eeeecCCcccc--HHHHHhccCceeEEeecCCCcccCHHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED   60 (119)
Q Consensus        15 vv~~s~~~H~S--~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~   60 (119)
                      .+++++..|++  ..+++...|..++.+|.+.++.+|++.|++++.+.
T Consensus        90 ~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~  137 (411)
T 3nnk_A           90 KVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRI  137 (411)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH
T ss_pred             EEEEecCCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhC
Confidence            46667788877  77888889999999999999999999999998763

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=92.85  E-value=0.3  Score=35.92  Aligned_cols=60  Identities=15%  Similarity=0.189  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++..++......|-.+++..-++.+....+...|.+++.++.++++.+|+++|++++.+
T Consensus        95 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  154 (363)
T 3ffh_A           95 ELIELLTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAIDE  154 (363)
T ss_dssp             HHHHHHHHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCT
T ss_pred             HHHHHHHHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhccc
Confidence            444455544445566778888899999999999999999999998899999999998853

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=92.85  E-value=0.24  Score=36.93  Aligned_cols=74  Identities=20%  Similarity=0.173  Sum_probs=55.7

Q ss_pred             HhccCce-eEEeecCCCcccCHHHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHHHH
Q psy9815          30 GLLGGVT-IRGLPADDSYKLRGDALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEA  106 (119)
Q Consensus        30 ~~~~G~~-~~~v~~d~~~~m~~~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L~~  106 (119)
                      +..+|.. ...+   .+|   .+++.-++... ...|-.+++..-+|.++..++...|++++.++++++ +.+|+++|++
T Consensus        48 a~~~~~~~~i~~---~sG---t~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~  121 (388)
T 1b9h_A           48 AAHHGAAHALAV---TNG---THALELALQVMGVGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAA  121 (388)
T ss_dssp             HHHTTCSEEEEE---SCH---HHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHH
T ss_pred             HHHhCCCeEEEe---CCH---HHHHHHHHHHcCCCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHH
Confidence            4567764 2222   234   36677666655 455667788889999999999999999999999864 8999999999


Q ss_pred             HHH
Q psy9815         107 AIE  109 (119)
Q Consensus       107 ~i~  109 (119)
                      +|+
T Consensus       122 ~i~  124 (388)
T 1b9h_A          122 AVT  124 (388)
T ss_dssp             HCC
T ss_pred             hcC
Confidence            885

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=92.81  E-value=0.1  Score=42.08  Aligned_cols=47  Identities=15%  Similarity=0.111  Sum_probs=39.5

Q ss_pred             CeeeeecCCccccHHHHHhccCceeEEeec---CCCcccCHHHHHHHHHHH
Q psy9815          13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPA---DDSYKLRGDALEAAIEED   60 (119)
Q Consensus        13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~---d~~~~m~~~~L~~~i~~~   60 (119)
                      +.++ .+..+|.|+.||+.+.|+..+.|+.   ++.+.+|++.|++++++.
T Consensus       163 d~VI-vpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~  212 (501)
T 3hl2_A          163 KYII-WPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQEL  212 (501)
T ss_dssp             CEEE-EECCCCHHHHHHHHHTTCEEEEECEEEETTEEEECHHHHHHHHHHH
T ss_pred             CEEE-EecchHHHHHHHHHHcCCeEEEEeeeecccccCCCHHHHHHHHHhc
Confidence            3444 4899999999999999998777755   457999999999999886

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=92.80  E-value=0.24  Score=36.84  Aligned_cols=61  Identities=16%  Similarity=0.103  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHHHHHHHH
Q psy9815          50 GDALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE  110 (119)
Q Consensus        50 ~~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L~~~i~~  110 (119)
                      .+++.-++... ...|-.+++...+|.++..++...|++++.++.+++ +.+|+++|++++++
T Consensus        64 t~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~  126 (393)
T 1mdo_A           64 TAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP  126 (393)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT
T ss_pred             HHHHHHHHHHcCCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC
Confidence            35566565554 445667788889999999999999999999999865 78999999998853

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=92.72  E-value=0.25  Score=36.98  Aligned_cols=60  Identities=18%  Similarity=0.103  Sum_probs=48.2

Q ss_pred             HHHHHHHHHH-------HhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEED-------LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~-------~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L~~~i~~  110 (119)
                      +++.-++...       ...|-.+++..-+|.++..++...|.+++.++++++ +.+|+++|+++|.+
T Consensus        60 ~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~  127 (390)
T 3b8x_A           60 TANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD  127 (390)
T ss_dssp             HHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT
T ss_pred             HHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCc
Confidence            4566666554       344556788889999999999999999999999876 99999999998853

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=92.34  E-value=0.23  Score=36.54  Aligned_cols=59  Identities=15%  Similarity=0.111  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcch--HHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gs--t~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++. ++......|-.+++...++.+  ....+...|.+++.++.++++.+|.++|++++++
T Consensus        65 ~al~-~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  125 (384)
T 3zrp_A           65 SAME-SVTSLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRK  125 (384)
T ss_dssp             HHHH-HGGGGCCTTCEEEEECSSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHH
T ss_pred             HHHH-HHHhhcCCCCEEEEecCCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHh
Confidence            4555 555444455556666666644  3455567899999999999999999999999976

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=92.30  E-value=0.38  Score=35.32  Aligned_cols=60  Identities=15%  Similarity=0.246  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHH----hCCCccEEeecCcchHHHHH---HhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDL----KKGKIPFYVNQAHSSVERAG---LLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~----~~g~~p~~v~~t~gst~~~a---~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++.-++....    ..|-.+++...+|.+....+   ...|.+++.++.++++.+|.++|++++++
T Consensus        72 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  138 (384)
T 1eg5_A           72 ESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE  138 (384)
T ss_dssp             HHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT
T ss_pred             HHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC
Confidence            44555555444    45666777777887776655   67799999999999999999999998853

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=92.20  E-value=0.25  Score=36.90  Aligned_cols=45  Identities=7%  Similarity=-0.048  Sum_probs=38.4

Q ss_pred             eeeecCCcccc--HHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S--~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .+++++..|++  ..+++...|..++.+|.+.++.+|++.|++++.+
T Consensus        88 ~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  134 (416)
T 3isl_A           88 DVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKK  134 (416)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             EEEEecCCcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhh
Confidence            45566778887  7778888999999999999999999999999874

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=92.10  E-value=0.41  Score=35.63  Aligned_cols=59  Identities=15%  Similarity=0.045  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeec------CCCCCcCHHHHHHHHHH
Q psy9815          52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPA------DDSYKLRGDALEAAIEE  110 (119)
Q Consensus        52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~------d~~~~m~~~~L~~~i~~  110 (119)
                      ++.-++......|-.+++..-+|.+...++...|.+++.++.      ++++.+|.++|++++++
T Consensus       114 a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~  178 (407)
T 3nra_A          114 ALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA  178 (407)
T ss_dssp             HHHHHHHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh
Confidence            344444333345566778888999999999999999999998      47899999999999975

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=91.95  E-value=0.39  Score=34.92  Aligned_cols=60  Identities=17%  Similarity=0.164  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHhCCCccEEee-cCcch-HHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVN-QAHSS-VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~-~t~gs-t~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++.-++......|-..++.. ..|++ ....+...|++++.+++++++.+|.++|+++|++
T Consensus        67 ~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  128 (366)
T 1m32_A           67 YAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNA  128 (366)
T ss_dssp             HHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc
Confidence            445555544333443334443 66776 4567788899999999999999999999999976

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=91.94  E-value=0.55  Score=34.53  Aligned_cols=61  Identities=11%  Similarity=0.041  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcc--hHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHS--SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  111 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~g--st~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~  111 (119)
                      +++..++......|-.+++...++.  ++...+...|.+++.++.++++.+|.++|++++++.
T Consensus        85 ~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~  147 (393)
T 3kgw_A           85 CAMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQH  147 (393)
T ss_dssp             THHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhC
Confidence            3445555554555655555555553  336777888999999999999999999999999863

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=91.81  E-value=0.8  Score=34.72  Aligned_cols=65  Identities=22%  Similarity=0.178  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHH-hcCceeEEeecCC--CCCcCHHHHHHHHHHHHhCC
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGL-LGGVTIRGLPADD--SYKLRGDALEAAIEEDLKKG  115 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~-~~g~~~~~v~~d~--~~~m~~~~L~~~i~~~~~~G  115 (119)
                      +++.-++......|-.+++..-+|++...++. ..|.+++.++.++  ++.+|.++|++++++....|
T Consensus       122 ~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~  189 (435)
T 3piu_A          122 SANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRN  189 (435)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcC
Confidence            34455555544556667778888999988888 7899999999875  46799999999998765443

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=91.73  E-value=0.8  Score=34.39  Aligned_cols=61  Identities=11%  Similarity=0.094  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeec-CCCCCcCHHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPA-DDSYKLRGDALEAAIEED  111 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~-d~~~~m~~~~L~~~i~~~  111 (119)
                      +++.-++......|-.+++..-++.....++...|.+++.+++ ++++.+|.++|++++++.
T Consensus       113 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~  174 (418)
T 3rq1_A          113 GGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNEL  174 (418)
T ss_dssp             HHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHh
Confidence            4455555555556666777788899999999999999999998 456799999999999864

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=91.67  E-value=0.29  Score=36.05  Aligned_cols=45  Identities=9%  Similarity=-0.003  Sum_probs=38.5

Q ss_pred             eeeecCCcccc--HHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S--~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .+++++..|++  ...++...|..++.+|.+.++.++++.|++++++
T Consensus        97 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  143 (386)
T 2dr1_A           97 KVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRK  143 (386)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhc
Confidence            46667778887  7788888999999999998899999999999865

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=91.64  E-value=0.7  Score=36.25  Aligned_cols=65  Identities=9%  Similarity=0.074  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHH-hCCCccEEeecCcchHHHHHHhcCceeEEeecCCC--CCcCHHHHHHHHHHHHhCC
Q psy9815          51 DALEAAIEEDL-KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIEEDLKKG  115 (119)
Q Consensus        51 ~~L~~~i~~~~-~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~--~~m~~~~L~~~i~~~~~~G  115 (119)
                      +++.-.+.... ..|-.+++..-++.+...++...|.+++.++++++  +.+|+++|+++|++....|
T Consensus       168 ~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~  235 (500)
T 3tcm_A          168 PGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRG  235 (500)
T ss_dssp             HHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcC
Confidence            44555555444 45667788889999999999999999999998765  5999999999998865554

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=91.24  E-value=0.45  Score=35.78  Aligned_cols=60  Identities=20%  Similarity=0.077  Sum_probs=48.7

Q ss_pred             HHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~~  110 (119)
                      +++..++... ...|-.+++...++.++..++...|.+++.++.++ ++.+|.++|+++|++
T Consensus        89 ~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~  150 (399)
T 2oga_A           89 DALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITP  150 (399)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCT
T ss_pred             HHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCC
Confidence            5666666554 44566678888899999999999999999999986 589999999998853

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=91.19  E-value=0.74  Score=33.81  Aligned_cols=58  Identities=10%  Similarity=-0.103  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++..++......|-.+++..-++.+...++...|.+++.++.+++  +|+++|++++++
T Consensus        92 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~d~~~l~~~l~~  149 (377)
T 3fdb_A           92 RGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG--INLHDVEKGFQA  149 (377)
T ss_dssp             HHHHHHHHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS--CCHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC--CCHHHHHHHhcc
Confidence            4455555555555666788888999999999999999999999887  999999999875

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=91.15  E-value=0.15  Score=37.90  Aligned_cols=59  Identities=24%  Similarity=0.147  Sum_probs=48.9

Q ss_pred             HHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHHHHHHH
Q psy9815          51 DALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L~~~i~  109 (119)
                      +++.-++... ...|-.+++..-+|.++..++...|.+++.++++++ +.+|+++|+++|+
T Consensus        61 ~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~  121 (367)
T 3nyt_A           61 DALQIVQMALGVGPGDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAIT  121 (367)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCC
T ss_pred             HHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcC
Confidence            5666666655 455667888889999999999999999999999866 8999999998874

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=91.09  E-value=0.52  Score=35.22  Aligned_cols=58  Identities=22%  Similarity=0.151  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      ++..++......|-.+++..-++.+...++...|.+++.++.++++ +|.++|++++++
T Consensus       103 al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~-~d~~~l~~~l~~  160 (397)
T 2zyj_A          103 ALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEG-PDLDALEEVLKR  160 (397)
T ss_dssp             HHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCCC-CCHHHHHHHHhh
Confidence            4444444444456567777888889999999999999999987765 999999999975

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=91.08  E-value=0.33  Score=38.13  Aligned_cols=50  Identities=12%  Similarity=0.081  Sum_probs=42.4

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCCC--cccCHHHHHHHHHHHHhCC
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIEEDLKKG   64 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~--~~m~~~~L~~~i~~~~~~g   64 (119)
                      .|++++-.|.+...++...|..++.+++++.  +.+|++.|++++++...++
T Consensus       184 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~  235 (500)
T 3tcm_A          184 GILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRG  235 (500)
T ss_dssp             EEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTT
T ss_pred             EEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcC
Confidence            5777888999999999999999999998764  6999999999998865554

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=91.05  E-value=0.39  Score=35.63  Aligned_cols=45  Identities=13%  Similarity=0.011  Sum_probs=38.5

Q ss_pred             eeeecCCcccc--HHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S--~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .+++++..|.+  ...++...|..++.+|.+.++.++++.|++++.+
T Consensus       111 ~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  157 (393)
T 1vjo_A          111 VVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALET  157 (393)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             EEEEEcCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhh
Confidence            45666777887  8888888999999999998899999999999875

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=90.96  E-value=0.31  Score=35.48  Aligned_cols=60  Identities=20%  Similarity=0.140  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHH--HHhcCceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERA--GLLGGVTIRGLPADDSYKLRGDALEAAIEED  111 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~--a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~  111 (119)
                      +++..++......|-.+++...+|.+...+  +...|.+++.++.+ ++.+|.++|++++++.
T Consensus        77 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~  138 (359)
T 1svv_A           77 QTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP-DGKLRVADIESALHEN  138 (359)
T ss_dssp             HHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSCCCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHH
Confidence            445555555545566677778888888773  77889999999986 7899999999999764

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=90.92  E-value=1.1  Score=33.14  Aligned_cols=60  Identities=17%  Similarity=0.163  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHH--HHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVE--RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~--~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++..++......|-.+++...+|.+..  ..+...|.+++.++.++++.+|.++|+++|++
T Consensus        81 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  142 (393)
T 2huf_A           81 GGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLI  142 (393)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhc
Confidence            4555555554445555666666776642  23345799999999998899999999999975

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=90.91  E-value=0.55  Score=35.07  Aligned_cols=60  Identities=27%  Similarity=0.227  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  111 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~  111 (119)
                      +++..++......|-.+++..-++.....++...|.+++.++.++++ +|.++|++++++.
T Consensus       109 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~  168 (407)
T 2zc0_A          109 GALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDNDG-MRVDLLEEKIKEL  168 (407)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCCCC-CCHHHHHHHHHhh
Confidence            44555555544556667778888888999999999999999998765 9999999999843

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=90.90  E-value=0.31  Score=36.82  Aligned_cols=60  Identities=17%  Similarity=0.118  Sum_probs=49.6

Q ss_pred             HHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~~  110 (119)
                      +++.-++... ...|-.+++..-+|.++..++...|.+++.++.++ ++.+|.++|++++++
T Consensus        68 ~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~  129 (418)
T 2c81_A           68 TALMLALEALGIGEGDEVIVPSLTWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITD  129 (418)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCT
T ss_pred             HHHHHHHHHcCCCCcCEEEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCC
Confidence            6666666655 45566778888999999999999999999999986 799999999988753

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=90.89  E-value=0.73  Score=33.82  Aligned_cols=60  Identities=5%  Similarity=-0.039  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHH---hCCCccEEeec-Cc-chHHHHHHhcCceeEEeec-CCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDL---KKGKIPFYVNQ-AH-SSVERAGLLGGVTIRGLPA-DDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~---~~g~~p~~v~~-t~-gst~~~a~~~g~~~~~v~~-d~~~~m~~~~L~~~i~~  110 (119)
                      +++.-++....   ..|-.+++... .+ .+....+...|.+++.+++ ++++.+|.++|++++++
T Consensus        70 ~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~  135 (385)
T 2bkw_A           70 LGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ  135 (385)
T ss_dssp             HHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc
Confidence            45555555543   44544444423 33 3334677888999999999 88999999999999975

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=90.88  E-value=0.93  Score=33.47  Aligned_cols=60  Identities=8%  Similarity=-0.020  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHH--HHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVE--RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~--~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++.-++......|-.+++...+|.+..  ..+...|++++.+++++++.+|+++|++++++
T Consensus        70 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  131 (392)
T 2z9v_A           70 LGLEAAAASLISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKA  131 (392)
T ss_dssp             HHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhc
Confidence            4555555554445656667777776653  23344799999999998899999999999975

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=90.86  E-value=0.58  Score=35.45  Aligned_cols=60  Identities=17%  Similarity=-0.021  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  111 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~  111 (119)
                      +++.-++......|-.+++..-++.+...++...|.+++.++.++++ +|.++|++++++.
T Consensus       120 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~  179 (425)
T 1vp4_A          120 QALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDG-MDLNVLERKLSEF  179 (425)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHHhh
Confidence            34444554444456667777888889999999999999999998765 9999999999863

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=90.74  E-value=0.16  Score=37.58  Aligned_cols=60  Identities=20%  Similarity=0.226  Sum_probs=49.7

Q ss_pred             HHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++..++... ...|-.+++...+|.++..++...|++++.++.++++.+|+++|++++++
T Consensus        64 ~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~  124 (374)
T 3uwc_A           64 DALAMSFKMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSENGYVIDPEKIEAAITD  124 (374)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTSSBCGGGTGGGCCT
T ss_pred             HHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHhCCC
Confidence            4566666655 45566788889999999999999999999999998899999999988754

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=90.69  E-value=0.13  Score=37.99  Aligned_cols=59  Identities=15%  Similarity=-0.043  Sum_probs=47.8

Q ss_pred             HHHHHHHHHH---HhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEED---LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~---~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~  109 (119)
                      +++..++...   ...|-.+++...+|.++..++...|++++.++.++++.+|.++|+++++
T Consensus        58 ~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~  119 (375)
T 2fnu_A           58 SALLTLYRNFSEFSADRNEIITTPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLIN  119 (375)
T ss_dssp             HHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCC
T ss_pred             HHHHHHHHHhcccCCCCCEEEECCCccHhHHHHHHHCCCEEEEeccCCCCCCCHHHHHhhcC
Confidence            4555555554   3456677888899999999999999999999998888999999988875

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=90.68  E-value=0.56  Score=34.92  Aligned_cols=60  Identities=15%  Similarity=0.149  Sum_probs=44.5

Q ss_pred             HHHHHHHHHH----HhCCCccEEeecCcchH----HHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEED----LKKGKIPFYVNQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~----~~~g~~p~~v~~t~gst----~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++.-++...    ...|-.+++...+|.++    ...+...|++++.++.++++.+|+++|++++++
T Consensus       101 ~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  168 (420)
T 1t3i_A          101 EAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSE  168 (420)
T ss_dssp             HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCT
T ss_pred             HHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCC
Confidence            3444444443    34565677777888873    566678899999999999999999999998853

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=90.64  E-value=0.53  Score=36.33  Aligned_cols=59  Identities=20%  Similarity=0.132  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++..++......|-.+++..-++.....++...|.+++.|+.|+++ +|+++|+++++.
T Consensus       151 ~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~  209 (448)
T 3aow_A          151 QALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDEG-MKVEILEEKLKE  209 (448)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHhh
Confidence            44555555544556667778888888999999999999999998775 999999999974

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=90.57  E-value=0.69  Score=34.28  Aligned_cols=60  Identities=15%  Similarity=0.079  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~~  110 (119)
                      +++.-++......|-.+++...+|.+...++...|.+++.++.++  ++.+|.++|++++++
T Consensus       101 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  162 (388)
T 1j32_A          101 QSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP  162 (388)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc
Confidence            344445544444566677888889999999999999999999875  688999999998853

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=90.32  E-value=0.36  Score=34.93  Aligned_cols=44  Identities=14%  Similarity=0.034  Sum_probs=35.2

Q ss_pred             eeecCCccccH--HHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          16 GYCSDQAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        16 v~~s~~~H~S~--~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      ++.++..|++.  .+++...|..++.+|.++++.++++.|++++.+
T Consensus        77 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  122 (353)
T 2yrr_A           77 VLVLVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKR  122 (353)
T ss_dssp             EEEEECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHH
T ss_pred             EEEEcCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHh
Confidence            44556677763  456677899999999998899999999998865

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=90.13  E-value=1.1  Score=33.28  Aligned_cols=59  Identities=19%  Similarity=0.251  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~  109 (119)
                      +++..++......|-.+++..-+|.+....+...|.+++.++.++ ++.+|.++|++++.
T Consensus       102 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~  161 (386)
T 1u08_A          102 EALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLS  161 (386)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhc
Confidence            445555544444566678888899999999999999999999976 58899999999874

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=90.08  E-value=0.33  Score=36.04  Aligned_cols=49  Identities=12%  Similarity=0.081  Sum_probs=38.8

Q ss_pred             hCCC-ccEEeecCcchHHHHHHhc---CceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          62 KKGK-IPFYVNQAHSSVERAGLLG---GVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        62 ~~g~-~p~~v~~t~gst~~~a~~~---g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      ..|- .+++....|.++..+...+   |.+++.++.++++.+|+++|++++++
T Consensus       106 ~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  158 (400)
T 3vax_A          106 RTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRP  158 (400)
T ss_dssp             HHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCT
T ss_pred             cCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCC
Confidence            3455 5666667788877766664   88999999999999999999998753

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=90.07  E-value=0.25  Score=36.92  Aligned_cols=59  Identities=20%  Similarity=0.157  Sum_probs=49.3

Q ss_pred             HHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecC-CCCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d-~~~~m~~~~L~~~i~  109 (119)
                      +++.-++... ...|-.+++...+|.++..++...|.+++.++++ +++.+|+++|+++++
T Consensus        82 ~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~  142 (391)
T 3dr4_A           82 TALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALIT  142 (391)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCC
T ss_pred             HHHHHHHHHcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcC
Confidence            5666666665 4566678888999999999999999999999998 678999999988875

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=90.03  E-value=0.44  Score=34.95  Aligned_cols=45  Identities=9%  Similarity=-0.035  Sum_probs=36.4

Q ss_pred             eeeecCCcccc--HHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S--~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .+++++..|++  ....+...|..++.+|.+.++.+|++.|++++.+
T Consensus        79 ~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  125 (384)
T 3zrp_A           79 KILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRK  125 (384)
T ss_dssp             EEEEECSSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHH
T ss_pred             EEEEecCCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHh
Confidence            35556667765  5566678899999999999999999999999876

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=89.96  E-value=0.48  Score=35.62  Aligned_cols=45  Identities=18%  Similarity=0.105  Sum_probs=40.0

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .+++++..|.+...++...|..++.+|.++++.+|++.|++++.+
T Consensus        74 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  118 (394)
T 1o69_A           74 IVLASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKE  118 (394)
T ss_dssp             EEEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHH
T ss_pred             EEEECCCccHHHHHHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhc
Confidence            467788899999999999999999999998899999999998864

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=89.91  E-value=0.53  Score=37.99  Aligned_cols=47  Identities=17%  Similarity=0.146  Sum_probs=41.8

Q ss_pred             CccEEeecCcchHHHHHHhcCceeEEeec---CCCCCcCHHHHHHHHHHH
Q psy9815          65 KIPFYVNQAHSSVERAGLLGGVTIRGLPA---DDSYKLRGDALEAAIEED  111 (119)
Q Consensus        65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~---d~~~~m~~~~L~~~i~~~  111 (119)
                      -.+++.-..|-|+.+|..++|+..+.|+.   ++.+.+|+++|+++|++.
T Consensus       163 d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~  212 (501)
T 3hl2_A          163 KYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQEL  212 (501)
T ss_dssp             CEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEEECHHHHHHHHHHH
T ss_pred             CEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccCCCHHHHHHHHHhc
Confidence            45677899999999999999998888876   567999999999999986

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=89.62  E-value=1.7  Score=32.78  Aligned_cols=64  Identities=19%  Similarity=0.164  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHH-hcCceeEEeecC--CCCCcCHHHHHHHHHHHHhC
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGL-LGGVTIRGLPAD--DSYKLRGDALEAAIEEDLKK  114 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~-~~g~~~~~v~~d--~~~~m~~~~L~~~i~~~~~~  114 (119)
                      +.+..++......|-.+++..-+|+....+.. ..|++++.++.+  +++.+|.++|++++++....
T Consensus       119 ~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  185 (428)
T 1iay_A          119 GANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKS  185 (428)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhc
Confidence            34444444444456567777788888776554 789999999986  45689999999999875433

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=89.51  E-value=0.65  Score=34.09  Aligned_cols=46  Identities=4%  Similarity=-0.078  Sum_probs=35.3

Q ss_pred             eeeee-cCCccccHHHHHhccCceeEEeec-CCCcccCHHHHHHHHHH
Q psy9815          14 LVGYC-SDQAHSSVERAGLLGGVTIRGLPA-DDSYKLRGDALEAAIEE   59 (119)
Q Consensus        14 lvv~~-s~~~H~S~~ka~~~~G~~~~~v~~-d~~~~m~~~~L~~~i~~   59 (119)
                      -++++ +..-|.++.+++...|..++.+|. +.++.+|++.|++++.+
T Consensus        88 ~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~  135 (385)
T 2bkw_A           88 NVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ  135 (385)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH
T ss_pred             eEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc
Confidence            34444 445566655677788999999999 88899999999998865

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=89.27  E-value=0.14  Score=38.07  Aligned_cols=60  Identities=20%  Similarity=0.193  Sum_probs=49.0

Q ss_pred             HHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecC-CCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d-~~~~m~~~~L~~~i~~  110 (119)
                      +++.-++... ...|-.+++...+|.++..++...|.+++.++.+ +++.+|+++|++++++
T Consensus        62 ~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~  123 (373)
T 3frk_A           62 DALHLILKGYDIGFGDEVIVPSNTFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITE  123 (373)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCT
T ss_pred             HHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCC
Confidence            4566666555 4556678888999999999999999999999998 6789999999988753

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=89.00  E-value=0.38  Score=35.16  Aligned_cols=45  Identities=13%  Similarity=0.123  Sum_probs=37.7

Q ss_pred             eeeeecCCccccHHHHHhc---cCceeEEeecCCCcccCHHHHHHHHH
Q psy9815          14 LVGYCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIE   58 (119)
Q Consensus        14 lvv~~s~~~H~S~~ka~~~---~G~~~~~v~~d~~~~m~~~~L~~~i~   58 (119)
                      -.+++++..|.+...+...   .|..++.+|.++++.+|++.|++++.
T Consensus        89 d~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~  136 (382)
T 4hvk_A           89 KHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLR  136 (382)
T ss_dssp             CEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCC
T ss_pred             CEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhc
Confidence            3567788889998877665   48999999999999999999998874

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=88.65  E-value=1.2  Score=33.91  Aligned_cols=59  Identities=14%  Similarity=0.168  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCc-chHHHHHHhcCceeEEeecCC----------CCCcCHHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAH-SSVERAGLLGGVTIRGLPADD----------SYKLRGDALEAAIEED  111 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~-gst~~~a~~~g~~~~~v~~d~----------~~~m~~~~L~~~i~~~  111 (119)
                      +++.-++......|-  ++...+| +++..+....|.+++.+++++          ++.+|+++|+++|++.
T Consensus       101 ~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~  170 (456)
T 2ez2_A          101 GAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEK  170 (456)
T ss_dssp             HHHHHHHHHHCCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCC--EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhc
Confidence            345555544444454  6677788 888899999999999998873          3789999999999764

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=88.60  E-value=0.91  Score=33.70  Aligned_cols=45  Identities=9%  Similarity=-0.116  Sum_probs=39.1

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeec------CCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPA------DDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~------d~~~~m~~~~L~~~i~~   59 (119)
                      .|++++..|.+...++...|.+++.+|.      ++++.++++.|++++.+
T Consensus       128 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~  178 (407)
T 3nra_A          128 KVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA  178 (407)
T ss_dssp             EEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT
T ss_pred             EEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh
Confidence            4667888999999999999999999998      47789999999998865

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=88.56  E-value=0.53  Score=34.21  Aligned_cols=47  Identities=15%  Similarity=0.137  Sum_probs=37.8

Q ss_pred             CeeeeecCCcccc-HHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          13 NLVGYCSDQAHSS-VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        13 ~lvv~~s~~~H~S-~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      +-+++++...|.+ ...++...|..++.+|.+..+.+|++.|++++.+
T Consensus        81 d~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  128 (366)
T 1m32_A           81 DKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNA  128 (366)
T ss_dssp             CCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHH
T ss_pred             CeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc
Confidence            4456677677765 4566777899999999998899999999999875

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=88.48  E-value=0.48  Score=34.96  Aligned_cols=60  Identities=15%  Similarity=0.106  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC----CCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD----DSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d----~~~~m~~~~L~~~i~~  110 (119)
                      +++..++......|-.+++...++.+...++...|.+++.++.+    +++.+|+++|++++++
T Consensus       101 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~  164 (391)
T 4dq6_A          101 PAISLLINELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD  164 (391)
T ss_dssp             HHHHHHHHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT
T ss_pred             HHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc
Confidence            44555555544556667778889999999999999999999987    3456999999998754

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=88.27  E-value=1.2  Score=33.19  Aligned_cols=60  Identities=17%  Similarity=0.083  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~~  110 (119)
                      +++.-++......|-.+++..-++.+...++...|.+++.++.++  ++.+|.++|++++++
T Consensus       112 ~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  173 (389)
T 1o4s_A          112 QALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG  173 (389)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT
T ss_pred             HHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc
Confidence            344444444444566678888899999999999999999999874  578999999998753

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=88.06  E-value=0.7  Score=34.24  Aligned_cols=60  Identities=22%  Similarity=0.276  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~~  110 (119)
                      +++.-++......|-.+++...+|.+...++...|.+++.++.++  ++.+|.++|++++++
T Consensus        98 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  159 (389)
T 1gd9_A           98 QAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD  159 (389)
T ss_dssp             HHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT
T ss_pred             HHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCc
Confidence            444444443334566678888899999999999999999999875  478999999998853

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=88.04  E-value=0.85  Score=33.24  Aligned_cols=45  Identities=13%  Similarity=0.168  Sum_probs=39.2

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .+++++..|.+...++...|.+++.+|.++++.++++.|++++.+
T Consensus        94 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~  138 (354)
T 3ly1_A           94 QLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAA  138 (354)
T ss_dssp             EEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHT
T ss_pred             eEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhcc
Confidence            456677889999999999999999999998899999999998863

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=88.01  E-value=1.5  Score=32.36  Aligned_cols=45  Identities=7%  Similarity=-0.039  Sum_probs=38.7

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .+++++..|.+...++...|..++.+|.++++.++++.|++++.+
T Consensus       118 ~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  162 (369)
T 3cq5_A          118 TALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRA  162 (369)
T ss_dssp             EEEEEESSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHH
T ss_pred             EEEEcCCChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhc
Confidence            456677888899888888999999999888889999999998865

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=87.98  E-value=1.4  Score=33.19  Aligned_cols=60  Identities=12%  Similarity=0.091  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHh-cCceeEEeecCC-CCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLL-GGVTIRGLPADD-SYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~-~g~~~~~v~~d~-~~~m~~~~L~~~i~~  110 (119)
                      +++.-++......|-.+++..-++......+.. .|.+++.++.++ ++.+|.++|++++++
T Consensus       124 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~  185 (430)
T 2x5f_A          124 HGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQS  185 (430)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHh
Confidence            445555555545566677788889999999999 999999999875 478999999999975

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=87.88  E-value=0.97  Score=33.19  Aligned_cols=44  Identities=5%  Similarity=-0.042  Sum_probs=35.2

Q ss_pred             eeecCCcccc--HHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          16 GYCSDQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        16 v~~s~~~H~S--~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      +++++..||+  ...++...|..++.+|.+.++.+|++.|++++.+
T Consensus       101 vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~  146 (393)
T 3kgw_A          101 FLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQ  146 (393)
T ss_dssp             EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             EEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhh
Confidence            4444666663  3677778899999999998899999999999876

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=87.81  E-value=0.57  Score=34.69  Aligned_cols=59  Identities=20%  Similarity=0.258  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC---CCCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD---DSYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d---~~~~m~~~~L~~~i~  109 (119)
                      +++..++......|-.+++...+|.+....+...|.+++.++.+   +++.+|.++|+++++
T Consensus        89 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~  150 (381)
T 1v2d_A           89 EALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT  150 (381)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcC
Confidence            44555555444556677888889999999999999999999987   568899999998874

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=87.48  E-value=0.88  Score=33.52  Aligned_cols=59  Identities=12%  Similarity=0.031  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC---CCCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD---DSYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d---~~~~m~~~~L~~~i~  109 (119)
                      +++..++......|-.+++..-+|.++..++...|.+++.++.+   +++.+|+++|+++++
T Consensus        96 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~  157 (391)
T 3dzz_A           96 PAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLA  157 (391)
T ss_dssp             HHHHHHHHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHh
Confidence            44555555554556677788889999999999999999999984   335599999999986

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=87.42  E-value=0.85  Score=34.42  Aligned_cols=45  Identities=16%  Similarity=0.139  Sum_probs=39.0

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecC-CCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d-~~~~m~~~~L~~~i~~   59 (119)
                      .|+++...|.+...++...|..++.++.+ +++.+|++.|++++..
T Consensus        80 ~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~  125 (377)
T 3ju7_A           80 YALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEE  125 (377)
T ss_dssp             EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHH
T ss_pred             EEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhc
Confidence            46678899999999999999999999988 5789999999998843

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=87.39  E-value=0.73  Score=34.10  Aligned_cols=59  Identities=17%  Similarity=0.251  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHhCC-CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKG-KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~~~~g-~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~  109 (119)
                      +++..++......| -.+++..-++.....++...|.+++.++.++++.+|.++|+++++
T Consensus        86 ~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~  145 (356)
T 1fg7_A           86 EGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLD  145 (356)
T ss_dssp             HHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCCHHHHHTSCT
T ss_pred             HHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHHhc
Confidence            44555554444456 567777888999999999999999999998888999999988764

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=87.38  E-value=0.54  Score=34.54  Aligned_cols=58  Identities=12%  Similarity=0.007  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeec-CCCCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPA-DDSYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~-d~~~~m~~~~L~~~i~  109 (119)
                      +++..++......|-.+++..-++......+...|.+++.++. ++++ +|.++|+++++
T Consensus        93 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~  151 (365)
T 3get_A           93 QVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHK  151 (365)
T ss_dssp             HHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhC
Confidence            3444444444445666777788899999999999999999998 7778 99999999886

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=87.28  E-value=0.72  Score=33.89  Aligned_cols=45  Identities=18%  Similarity=0.251  Sum_probs=38.9

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .+++++..|.+...++...|.+++.+|.++++.+|++.|++++.+
T Consensus       111 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  155 (367)
T 3euc_A          111 KVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAE  155 (367)
T ss_dssp             EEEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHH
T ss_pred             EEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhc
Confidence            355667788888888888999999999999999999999999876

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=87.21  E-value=1.3  Score=33.55  Aligned_cols=58  Identities=16%  Similarity=-0.004  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~  109 (119)
                      +++.-++.... .|-.+++..-+|.++..++...|++++.+++++ ++.+|+++|+++++
T Consensus        78 ~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~  136 (424)
T 2po3_A           78 AGLQLLAHAAG-LTGEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVT  136 (424)
T ss_dssp             HHHHHHHHHHT-CCSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCC
T ss_pred             HHHHHHHHHcC-CCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhC
Confidence            34444444332 455678888899999999999999999999986 78899999998875

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=87.20  E-value=1.3  Score=31.80  Aligned_cols=44  Identities=14%  Similarity=0.087  Sum_probs=34.8

Q ss_pred             cEEeecCcchH--HHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          67 PFYVNQAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        67 p~~v~~t~gst--~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++....|.+.  ...+...|++++.++.++++.+|.++|++++++
T Consensus        77 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  122 (353)
T 2yrr_A           77 VLVLVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKR  122 (353)
T ss_dssp             EEEEECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHH
T ss_pred             EEEEcCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHh
Confidence            44555566653  455677899999999999999999999999975

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=87.17  E-value=0.69  Score=35.95  Aligned_cols=60  Identities=18%  Similarity=0.233  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhCCCccEEee-cCcchHHHHHHh----------cCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVN-QAHSSVERAGLL----------GGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~-~t~gst~~~a~~----------~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++..++......|-.+++.. .+|+++.....+          .|++++.++.++++.+|.++|++++++
T Consensus        94 ~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~  164 (431)
T 3ht4_A           94 HAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS  164 (431)
T ss_dssp             HHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC
Confidence            566666655545565566665 689998877654          688999999999999999999998853

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=87.11  E-value=0.67  Score=34.39  Aligned_cols=44  Identities=20%  Similarity=0.175  Sum_probs=38.2

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE   58 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~   58 (119)
                      .|++++..|.+...++...|..++.++.++ ++.+|++.|++++.
T Consensus        80 ~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~  124 (388)
T 1b9h_A           80 EVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVT  124 (388)
T ss_dssp             EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCC
T ss_pred             EEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcC
Confidence            467788999999999999999999999986 48999999988764

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=87.07  E-value=1  Score=33.79  Aligned_cols=60  Identities=12%  Similarity=0.046  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~~  110 (119)
                      +++.-++......|-.+++..-++.+...++...|.+++.++.++  .+.+|.++|++++++
T Consensus       112 ~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  173 (406)
T 1xi9_A          112 EALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD  173 (406)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT
T ss_pred             HHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCc
Confidence            344444444444566678888899999999999999999999874  567999999998854

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=87.00  E-value=2.6  Score=32.29  Aligned_cols=45  Identities=7%  Similarity=-0.095  Sum_probs=37.5

Q ss_pred             eeeecCCccccHHHHHh----ccCceeEEeec-CCC--cccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGL----LGGVTIRGLPA-DDS--YKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~----~~G~~~~~v~~-d~~--~~m~~~~L~~~i~~   59 (119)
                      .|++++-.|.+....+.    ..|..++.+|. |++  +.+|++.|++++.+
T Consensus       147 ~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~  198 (448)
T 3meb_A          147 EFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQS  198 (448)
T ss_dssp             CEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHH
T ss_pred             EEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHh
Confidence            46667778888888888    89999999998 654  89999999999875

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=86.92  E-value=0.66  Score=34.04  Aligned_cols=44  Identities=14%  Similarity=0.141  Sum_probs=36.6

Q ss_pred             eeeecCCccccHHHHHhc---cCceeEEeecCCCcccCHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIE   58 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~---~G~~~~~v~~d~~~~m~~~~L~~~i~   58 (119)
                      .|++++..|.+...+...   .|..++.+|.++++.+|++.|++++.
T Consensus        90 ~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~  136 (382)
T 4eb5_A           90 HILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLR  136 (382)
T ss_dssp             EEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCC
T ss_pred             EEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhc
Confidence            567788889888777654   68899999999889999999998874

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=86.74  E-value=0.64  Score=34.68  Aligned_cols=45  Identities=11%  Similarity=0.001  Sum_probs=39.0

Q ss_pred             eeeeecCCccccHHHHHhccCceeEEeecCCC-cccCHHHHHHHHH
Q psy9815          14 LVGYCSDQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIE   58 (119)
Q Consensus        14 lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~-~~m~~~~L~~~i~   58 (119)
                      -.|++++..|.+...++...|..++.++.+++ +.+|++.|++++.
T Consensus        81 ~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~  126 (390)
T 3b8x_A           81 DEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVT  126 (390)
T ss_dssp             CEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCC
T ss_pred             CEEEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhC
Confidence            35777889999999999999999999999875 9999999998874

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=86.69  E-value=0.89  Score=34.12  Aligned_cols=59  Identities=20%  Similarity=0.256  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC---CCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD---SYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~---~~~m~~~~L~~~i~  109 (119)
                      +++..++......|-.+++..-++.+...++...|.+++.++.++   ++.+|.++|+++++
T Consensus        97 ~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~  158 (411)
T 2o0r_A           97 EAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVT  158 (411)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCC
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhc
Confidence            445555554445566678888899999999999999999999865   37799999999885

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=86.67  E-value=1.2  Score=32.69  Aligned_cols=59  Identities=8%  Similarity=-0.011  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~  109 (119)
                      +++..++......|-.+++..-++.++..++...|.+++.++.+  +.+.+|+++|+++++
T Consensus        92 ~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~  152 (375)
T 3op7_A           92 GANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIR  152 (375)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhc
Confidence            44555555555566678888899999999999999999999986  346689999999885

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=86.25  E-value=1.3  Score=32.64  Aligned_cols=45  Identities=13%  Similarity=0.020  Sum_probs=36.1

Q ss_pred             eeeecCCccccHH--HHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVE--RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~--ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .++.++..|.+..  +++...|..++.+|.+.++.++++.|++++.+
T Consensus        95 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  141 (396)
T 2ch1_A           95 RVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIEL  141 (396)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHH
T ss_pred             eEEEEcCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHh
Confidence            3555666777763  46778899999999998899999999999875

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=86.11  E-value=1.6  Score=32.47  Aligned_cols=45  Identities=9%  Similarity=-0.016  Sum_probs=36.5

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecC--CCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d--~~~~m~~~~L~~~i~~   59 (119)
                      .+++++-.|.+....+...|.++..+|.+  +++.++++.|++.+++
T Consensus       125 ~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  171 (401)
T 7aat_A          125 DVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISK  171 (401)
T ss_dssp             EEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT
T ss_pred             EEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHh
Confidence            35566778888888888899999999875  3789999988888865

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=86.06  E-value=1.2  Score=33.71  Aligned_cols=58  Identities=19%  Similarity=0.146  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~  109 (119)
                      +++.-++......|-.+++..-++......+...|.+++.++.++++ +|+++|+++++
T Consensus       119 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~  176 (425)
T 2r2n_A          119 QGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINVASDESG-IVPDSLRDILS  176 (425)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEEEECEETTE-ECHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeCcCCCC-CCHHHHHHHHH
Confidence            44555555544556667777888888889999999999999997764 99999999986

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=85.87  E-value=2  Score=31.88  Aligned_cols=59  Identities=17%  Similarity=0.174  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHhCC-CccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKG-KIPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~~~~g-~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~  109 (119)
                      +++..++......| -.+++..-++......+...|.+++.++.++ ++.+|.++|+++++
T Consensus       110 ~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~  170 (398)
T 3ele_A          110 ASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERIN  170 (398)
T ss_dssp             HHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCC
T ss_pred             HHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhC
Confidence            44555555555566 5677788889999999999999999999975 57999999998875

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=85.52  E-value=2.3  Score=31.99  Aligned_cols=59  Identities=22%  Similarity=0.264  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC----------CCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD----------SYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~----------~~~m~~~~L~~~i~  109 (119)
                      +++..++......|-.+++...++.....++...|.+++.++.++          ++.+|.++|+++++
T Consensus       112 ~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  180 (429)
T 1yiz_A          112 EALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN  180 (429)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCC
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhc
Confidence            445555555444566677788888888889999999999999865          46899999999874

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=85.51  E-value=2.6  Score=35.21  Aligned_cols=60  Identities=13%  Similarity=0.200  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC-----CCc-----CHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-----YKL-----RGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-----~~m-----~~~~L~~~i~~  110 (119)
                      .++..++......|-.+++...+|.|+..++...|.+++.++++.+     +.+     |.++|+++|++
T Consensus       232 ~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~  301 (755)
T 2vyc_A          232 GSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISE  301 (755)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCCccccccccCcCCCCHHHHHHHHHh
Confidence            4455566665667777888899999999999999999999987643     346     99999999986

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=85.50  E-value=0.86  Score=33.89  Aligned_cols=48  Identities=15%  Similarity=0.010  Sum_probs=38.2

Q ss_pred             hCCCccEEeecCcchHHHHHHh----cCceeEEeecC-CCCCcCHHHHHHHHH
Q psy9815          62 KKGKIPFYVNQAHSSVERAGLL----GGVTIRGLPAD-DSYKLRGDALEAAIE  109 (119)
Q Consensus        62 ~~g~~p~~v~~t~gst~~~a~~----~g~~~~~v~~d-~~~~m~~~~L~~~i~  109 (119)
                      ..|-.+++...+|.++......    .|.+++.++.+ +++.+|+++|++++.
T Consensus       111 ~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~  163 (406)
T 3cai_A          111 GLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLIS  163 (406)
T ss_dssp             BTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCC
T ss_pred             CCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhC
Confidence            4565677777888887665554    69999999998 789999999999885

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=85.39  E-value=1.3  Score=32.89  Aligned_cols=45  Identities=29%  Similarity=0.245  Sum_probs=37.3

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED   60 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~   60 (119)
                      .|++.+.+|.+...++...|..++.+|.++++ ++++.|++++.+.
T Consensus       124 ~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~  168 (407)
T 2zc0_A          124 VVITENPSYINTLLAFEQLGAKIEGVPVDNDG-MRVDLLEEKIKEL  168 (407)
T ss_dssp             EEEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHH
T ss_pred             EEEEeCCChHHHHHHHHHcCCEEEEcccCCCC-CCHHHHHHHHHhh
Confidence            35667788888888888999999999987765 9999999998743

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=85.39  E-value=3  Score=30.78  Aligned_cols=48  Identities=6%  Similarity=0.019  Sum_probs=40.6

Q ss_pred             CCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHHH
Q psy9815          63 KGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE  110 (119)
Q Consensus        63 ~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~~  110 (119)
                      .|-.+++..-++.....++...|.+++.++.+  +++.+|.++|++++++
T Consensus       116 ~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  165 (394)
T 2ay1_A          116 PDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAA  165 (394)
T ss_dssp             TTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHT
T ss_pred             CCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHh
Confidence            55567777888888888999999999999985  6788999999999874

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=85.36  E-value=0.83  Score=33.83  Aligned_cols=44  Identities=18%  Similarity=0.071  Sum_probs=38.3

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCCC-cccCHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIE   58 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~-~~m~~~~L~~~i~   58 (119)
                      .|++++..|.+...++...|..++.+|.+++ +.+|++.|++++.
T Consensus        81 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~  125 (393)
T 1mdo_A           81 EVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAIT  125 (393)
T ss_dssp             EEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCC
T ss_pred             EEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcC
Confidence            4777889999999999999999999998864 7899999998875

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=85.19  E-value=1.4  Score=32.98  Aligned_cols=59  Identities=10%  Similarity=0.076  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~  109 (119)
                      +++.-++......|-.+++..-++.+...++...|.+++.++.++  .+.+|.++|+++++
T Consensus       115 ~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~  175 (416)
T 1bw0_A          115 HGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD  175 (416)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC
T ss_pred             HHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhc
Confidence            344444444444566677888889989999999999999999865  37799999999875

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=85.15  E-value=1.4  Score=32.51  Aligned_cols=45  Identities=4%  Similarity=-0.136  Sum_probs=34.4

Q ss_pred             eeeecCCccccH--HHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~--~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .+++++..|++.  .+.+...|..++.+|.++++.+|++.|++++++
T Consensus        85 ~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  131 (392)
T 2z9v_A           85 VVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKA  131 (392)
T ss_dssp             CEEEEESSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHH
T ss_pred             EEEEecCCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhc
Confidence            356667777765  233445788999999998889999999999864

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=85.13  E-value=0.88  Score=33.31  Aligned_cols=44  Identities=16%  Similarity=0.230  Sum_probs=36.1

Q ss_pred             eeeecCCccccHHHHH---hccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAG---LLGGVTIRGLPADDSYKLRGDALEAAIE   58 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~---~~~G~~~~~v~~d~~~~m~~~~L~~~i~   58 (119)
                      .+++++..|.+...++   ...|..++.+|.++++.++++.|++++.
T Consensus        91 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~  137 (384)
T 1eg5_A           91 TIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVD  137 (384)
T ss_dssp             EEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCC
T ss_pred             EEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhC
Confidence            4667788888876665   5678999999998889999999998874

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=85.12  E-value=2.7  Score=30.99  Aligned_cols=49  Identities=10%  Similarity=0.023  Sum_probs=41.5

Q ss_pred             hCCCccEEeecCcchHHHHHHhcCceeEEeec--CCCCCcCHHHHHHHHHH
Q psy9815          62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPA--DDSYKLRGDALEAAIEE  110 (119)
Q Consensus        62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~--d~~~~m~~~~L~~~i~~  110 (119)
                      ..|-.+++..-++.+....+...|.+++.++.  ++++.+|.++|++++++
T Consensus       119 ~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  169 (397)
T 3fsl_A          119 FPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKT  169 (397)
T ss_dssp             CTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTT
T ss_pred             CCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHh
Confidence            45556777788888899999999999999998  56799999999999874

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=85.07  E-value=0.84  Score=34.15  Aligned_cols=47  Identities=19%  Similarity=0.097  Sum_probs=38.5

Q ss_pred             CeeeeecCCccccHHHHHhcc---CceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          13 NLVGYCSDQAHSSVERAGLLG---GVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        13 ~lvv~~s~~~H~S~~ka~~~~---G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .-.|++++..|.+...++..+   |.+++.+|.++++.+|++.|++++.+
T Consensus       113 gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  162 (423)
T 3lvm_A          113 GKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRD  162 (423)
T ss_dssp             CCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCT
T ss_pred             CCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCC
Confidence            345677888899988877555   99999999999999999999988753

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=85.05  E-value=4.2  Score=31.09  Aligned_cols=52  Identities=4%  Similarity=-0.152  Sum_probs=42.9

Q ss_pred             HHHhCCCccEEeecCcchHHHHHH----hcCceeEEeec-CCC--CCcCHHHHHHHHHH
Q psy9815          59 EDLKKGKIPFYVNQAHSSVERAGL----LGGVTIRGLPA-DDS--YKLRGDALEAAIEE  110 (119)
Q Consensus        59 ~~~~~g~~p~~v~~t~gst~~~a~----~~g~~~~~v~~-d~~--~~m~~~~L~~~i~~  110 (119)
                      .....|-.+++..-++.+....+.    ..|.+++.++. |++  +.+|.+.|++++++
T Consensus       140 ~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~  198 (448)
T 3meb_A          140 HLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQS  198 (448)
T ss_dssp             HHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHH
T ss_pred             HHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHh
Confidence            333456667788888999998888    99999999998 664  89999999999975

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=85.04  E-value=0.83  Score=33.71  Aligned_cols=60  Identities=13%  Similarity=0.162  Sum_probs=42.7

Q ss_pred             HHHHHHHHHH----HhCCCccEEeecCcchHH----HHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEED----LKKGKIPFYVNQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~----~~~g~~p~~v~~t~gst~----~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++.-++...    ...|-.+++...+|.++.    ..+...|.+++.++.++++.+|.++|++++.+
T Consensus        96 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~  163 (406)
T 1kmj_A           96 EGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE  163 (406)
T ss_dssp             HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT
T ss_pred             HHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhcc
Confidence            4455554443    345556677777776553    33667899999999998999999999998853

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=85.03  E-value=1.9  Score=31.03  Aligned_cols=45  Identities=9%  Similarity=-0.025  Sum_probs=39.3

Q ss_pred             CCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHH
Q psy9815          63 KGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAA  107 (119)
Q Consensus        63 ~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~  107 (119)
                      .|-.+++..-++.+...++...|++++.++.++++.+|+++|+++
T Consensus        89 ~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~  133 (337)
T 3p1t_A           89 SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQV  133 (337)
T ss_dssp             TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCTTSSBCHHHHTTC
T ss_pred             CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHhh
Confidence            455677778889999999999999999999999999999999865

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=85.03  E-value=1.7  Score=32.08  Aligned_cols=45  Identities=16%  Similarity=0.061  Sum_probs=34.0

Q ss_pred             eeeecCCccccH--HHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~--~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .++.++..|++.  .+.+...|..++.+|.+.++.++++.|++++.+
T Consensus        96 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  142 (393)
T 2huf_A           96 VILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLI  142 (393)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhc
Confidence            355666677763  233445788999999988889999999999865

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=84.81  E-value=1.9  Score=32.05  Aligned_cols=59  Identities=14%  Similarity=0.078  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~  109 (119)
                      +++.-++......|-.+++..-++......+...|.+++.++.++  ++.+|.++|+++++
T Consensus       102 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~  162 (385)
T 1b5p_A          102 QALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAIT  162 (385)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcC
Confidence            344445544444566677788889999999999999999999974  57899999998874

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=84.46  E-value=3.1  Score=31.27  Aligned_cols=50  Identities=12%  Similarity=0.079  Sum_probs=42.0

Q ss_pred             HhCCCccEEeecCcchHHHHHHhcCceeEEeec--CCCCCcCHHHHHHHHHH
Q psy9815          61 LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPA--DDSYKLRGDALEAAIEE  110 (119)
Q Consensus        61 ~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~--d~~~~m~~~~L~~~i~~  110 (119)
                      ...|-.+++..-++.+....+...|.+++.++.  ++++.+|.+.|++++++
T Consensus       140 ~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  191 (420)
T 4f4e_A          140 LNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNG  191 (420)
T ss_dssp             HCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTT
T ss_pred             hCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHh
Confidence            345666777888888899999999999999998  45789999999999864

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=84.34  E-value=1.3  Score=34.44  Aligned_cols=82  Identities=15%  Similarity=0.094  Sum_probs=51.9

Q ss_pred             cHHH-HHhccCceeEEe-ecCCCcccCHHHHHHHHHHHHhCCCccEEee-cCcchHH-----------HHHHhcCceeEE
Q psy9815          25 SVER-AGLLGGVTIRGL-PADDSYKLRGDALEAAIEEDLKKGKIPFYVN-QAHSSVE-----------RAGLLGGVTIRG   90 (119)
Q Consensus        25 S~~k-a~~~~G~~~~~v-~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~-~t~gst~-----------~~a~~~g~~~~~   90 (119)
                      .+++ .+.+.|..-..+ |.-.+|   ..++..++......|-.+++.. ..++++.           ..+...|++++.
T Consensus        77 ~Le~~lA~l~g~e~alv~p~~~sG---t~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~  153 (427)
T 3i16_A           77 SLDAVYARVFNTESALVRPHFVNG---THALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQ  153 (427)
T ss_dssp             HHHHHHHHHHTCSEEEEETTCCSH---HHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEE
T ss_pred             HHHHHHHHHhCCcceEEeCCCccH---HHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEE
Confidence            3443 356777642222 101223   2455555555555665566665 5676665           234456889999


Q ss_pred             eecCCCCCcCHHHHHHHHH
Q psy9815          91 LPADDSYKLRGDALEAAIE  109 (119)
Q Consensus        91 v~~d~~~~m~~~~L~~~i~  109 (119)
                      ++.+++|.+|.++|+++++
T Consensus       154 v~~~~~g~~D~e~l~~~l~  172 (427)
T 3i16_A          154 VDLKEDGKPNLEEIEKVLK  172 (427)
T ss_dssp             CCCCTTSSCCHHHHHHHHH
T ss_pred             ecCccCCCcCHHHHHHHhh
Confidence            9999999999999999997

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=84.26  E-value=1.1  Score=33.25  Aligned_cols=44  Identities=9%  Similarity=0.069  Sum_probs=36.1

Q ss_pred             eeeecCCcccc----HHHHHhccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815          15 VGYCSDQAHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAAIE   58 (119)
Q Consensus        15 vv~~s~~~H~S----~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~   58 (119)
                      .|++++..|.+    ....+...|..++.+|.++++.++++.|++++.
T Consensus       120 ~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~  167 (420)
T 1t3i_A          120 EIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLS  167 (420)
T ss_dssp             EEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCC
T ss_pred             EEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhC
Confidence            46677888888    456667789999999999889999999998874

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=84.02  E-value=1.9  Score=32.40  Aligned_cols=59  Identities=7%  Similarity=0.001  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHH--hCCC--ccEEeecCcchHHHHHHhcCceeEEeecC-CCCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEEDL--KKGK--IPFYVNQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~~--~~g~--~p~~v~~t~gst~~~a~~~g~~~~~v~~d-~~~~m~~~~L~~~i~  109 (119)
                      +++..++....  ..|-  .+++..-++.++..++...|.+++.++.+ +.+.+|+++|+++++
T Consensus       116 ~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~  179 (437)
T 3g0t_A          116 QGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQ  179 (437)
T ss_dssp             HHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHh
Confidence            44555555554  5565  67888889999999999999999999996 445799999999984

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=83.82  E-value=1  Score=33.93  Aligned_cols=45  Identities=11%  Similarity=-0.006  Sum_probs=36.6

Q ss_pred             eeeeecCCccccHHHHHh----ccCceeEEeecCC-CcccCHHHHHHHHH
Q psy9815          14 LVGYCSDQAHSSVERAGL----LGGVTIRGLPADD-SYKLRGDALEAAIE   58 (119)
Q Consensus        14 lvv~~s~~~H~S~~ka~~----~~G~~~~~v~~d~-~~~m~~~~L~~~i~   58 (119)
                      -.++++...|.|+.++..    ..|..++.+|.++ ++.++++.|++++.
T Consensus       124 ~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~  173 (432)
T 3a9z_A          124 PHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVR  173 (432)
T ss_dssp             CEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCC
T ss_pred             CeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhcc
Confidence            467889999999976654    3688999999886 78999999988774

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=83.48  E-value=1.3  Score=34.21  Aligned_cols=85  Identities=12%  Similarity=0.038  Sum_probs=54.5

Q ss_pred             cccHHHH-HhccCcee-EEeecCCCcccCHHHHHHHHHHHHhCCCccEEee-cCcchHHH----------HHHhcCceeE
Q psy9815          23 HSSVERA-GLLGGVTI-RGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVN-QAHSSVER----------AGLLGGVTIR   89 (119)
Q Consensus        23 H~S~~ka-~~~~G~~~-~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~-~t~gst~~----------~a~~~g~~~~   89 (119)
                      +..+++. +.+.|..- ...|.-.+|   .+++.-++......|-.+++.. .+++++..          .+...|++++
T Consensus        61 ~~~Le~~lA~l~g~e~alv~p~~~sG---t~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~  137 (409)
T 3jzl_A           61 RDTLERVYATVFKTEAALVRPQIISG---THAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYS  137 (409)
T ss_dssp             HHHHHHHHHHHHTCSEEEEETTSCSH---HHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEE
T ss_pred             HHHHHHHHHHHhCCCcEEEECCCccH---HHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEE
Confidence            3444443 56677632 222211223   2455556655555666666666 67887774          3345688999


Q ss_pred             EeecCCCCCcCHHHHHHHHHH
Q psy9815          90 GLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        90 ~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      .++.+++|.+|.++|+++++.
T Consensus       138 ~v~~~~~g~~d~e~l~~ai~~  158 (409)
T 3jzl_A          138 SVPLLENGDVDFPRIAKKMTP  158 (409)
T ss_dssp             ECCCCTTSCCCHHHHHHHCCT
T ss_pred             EeCCCCCCCcCHHHHHHhccC
Confidence            999999999999999998853

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=83.26  E-value=1.7  Score=31.96  Aligned_cols=60  Identities=10%  Similarity=-0.009  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      +++..++......|-.+++..-++.....++...|.+++.++.++.+.+|.++|+++++.
T Consensus        98 ~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~  157 (376)
T 2dou_A           98 EGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVWR  157 (376)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhcc
Confidence            445555554444565677778888888899999999999999855567999999998853

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=83.09  E-value=2.1  Score=32.22  Aligned_cols=60  Identities=15%  Similarity=0.137  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC---CCCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD---DSYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d---~~~~m~~~~L~~~i~~  110 (119)
                      ++++.++......|-.+++...++..+..++...|.+++.++.+   +++.+|.++|++++++
T Consensus       130 ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~  192 (421)
T 3l8a_A          130 PAISIALQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID  192 (421)
T ss_dssp             HHHHHHHHHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc
Confidence            35555555544455566777788888888999999999999874   4457999999999974

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=83.00  E-value=2.1  Score=31.71  Aligned_cols=60  Identities=13%  Similarity=0.016  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC---CCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS---YKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~---~~m~~~~L~~~i~~  110 (119)
                      +++..++......|-.+++..-++.+...++...|.+++.++.+++   +.+|.++|++++++
T Consensus        98 ~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~  160 (390)
T 1d2f_A           98 YMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK  160 (390)
T ss_dssp             HHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc
Confidence            3444444443344556677788888899999999999999998643   46999999999863

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=82.99  E-value=2.9  Score=31.46  Aligned_cols=45  Identities=11%  Similarity=-0.045  Sum_probs=39.8

Q ss_pred             CCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815          64 GKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  109 (119)
Q Consensus        64 g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~  109 (119)
                      |-.+++..-++......+...|.+++.+++++++ +|+++|+++++
T Consensus       133 gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~  177 (427)
T 3ppl_A          133 TVKWICPVPGYDRHFSITERFGFEMISVPMNEDG-PDMDAVEELVK  177 (427)
T ss_dssp             CCEEEEEESCCHHHHHHHHHTTCEEEEEEEETTE-ECHHHHHHHTT
T ss_pred             CCEEEEcCCCcHHHHHHHHHcCCEEEEeCCCCCC-CCHHHHHHHHh
Confidence            5667788888999999999999999999998876 99999999884

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=82.96  E-value=3.4  Score=30.86  Aligned_cols=46  Identities=11%  Similarity=-0.005  Sum_probs=37.9

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecC-CCcccCHHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEED   60 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d-~~~~m~~~~L~~~i~~~   60 (119)
                      .|++++-.|.+...++...|..++.+|.+ +++.+|++.|++++.+.
T Consensus       128 ~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~  174 (418)
T 3rq1_A          128 EVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNEL  174 (418)
T ss_dssp             EEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHH
T ss_pred             EEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHh
Confidence            35566777888888889999999999984 56799999999999764

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=82.84  E-value=5  Score=29.53  Aligned_cols=48  Identities=19%  Similarity=0.133  Sum_probs=40.5

Q ss_pred             CCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHHH
Q psy9815          63 KGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE  110 (119)
Q Consensus        63 ~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~~  110 (119)
                      .|-.+++..-++.....++...|.+++.++.+  +++.+|.++|++++++
T Consensus       119 ~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  168 (396)
T 2q7w_A          119 SVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNE  168 (396)
T ss_dssp             CCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT
T ss_pred             CCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHh
Confidence            55567777888888889999999999999985  6789999999999864

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=82.81  E-value=5.2  Score=29.79  Aligned_cols=48  Identities=13%  Similarity=0.117  Sum_probs=40.5

Q ss_pred             CCCccEEeecCcchHHHHHHhcCceeEEeec-C-CCCCcCHHHHHHHHHH
Q psy9815          63 KGKIPFYVNQAHSSVERAGLLGGVTIRGLPA-D-DSYKLRGDALEAAIEE  110 (119)
Q Consensus        63 ~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~-d-~~~~m~~~~L~~~i~~  110 (119)
                      .|-.+++..-++......+...|.+++.++. + +++.+|.++|++++++
T Consensus       123 ~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  172 (412)
T 1yaa_A          123 PDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQK  172 (412)
T ss_dssp             TTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHh
Confidence            5556777788888888999999999999998 5 3688999999999975

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=82.46  E-value=2.1  Score=31.67  Aligned_cols=59  Identities=17%  Similarity=-0.021  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC-CC--CCcCHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD-DS--YKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d-~~--~~m~~~~L~~~i~  109 (119)
                      +++..++......|-.+++..-++.+...++...|.+++.++.+ ++  +.+|.++|+++++
T Consensus       100 ~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~  161 (399)
T 1c7n_A          100 PAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSK  161 (399)
T ss_dssp             HHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhc
Confidence            44555554444455567777788889999999999999999885 33  4699999999986

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=82.40  E-value=2.1  Score=32.20  Aligned_cols=45  Identities=16%  Similarity=0.099  Sum_probs=37.1

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeec--CCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPA--DDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~--d~~~~m~~~~L~~~i~~   59 (119)
                      .|+.++-.|.+....+...|..++.+|.  ++++.+|++.|++.+.+
T Consensus       145 ~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  191 (420)
T 4f4e_A          145 KVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNG  191 (420)
T ss_dssp             CEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTT
T ss_pred             EEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHh
Confidence            3556677888888888899999999998  45799999999998864

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=82.18  E-value=2  Score=32.49  Aligned_cols=49  Identities=20%  Similarity=0.215  Sum_probs=39.3

Q ss_pred             eeeecCCccccHHHHHh-ccCceeEEeecCC--CcccCHHHHHHHHHHHHhC
Q psy9815          15 VGYCSDQAHSSVERAGL-LGGVTIRGLPADD--SYKLRGDALEAAIEEDLKK   63 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~-~~G~~~~~v~~d~--~~~m~~~~L~~~i~~~~~~   63 (119)
                      .+++.+..|.+...++. ..|..++.+|.++  .+.+|++.|++++.+....
T Consensus       137 ~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~  188 (435)
T 3piu_A          137 AVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKR  188 (435)
T ss_dssp             EEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHT
T ss_pred             eEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhc
Confidence            45667778988888877 7899999999875  4679999999999876544

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=82.14  E-value=2.6  Score=31.44  Aligned_cols=49  Identities=6%  Similarity=-0.009  Sum_probs=41.2

Q ss_pred             hCCCccEEeecCcchHHHHHHhcCceeEEeec--CCCCCcCHHHHHHHHHH
Q psy9815          62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPA--DDSYKLRGDALEAAIEE  110 (119)
Q Consensus        62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~--d~~~~m~~~~L~~~i~~  110 (119)
                      ..|-.+++..-++.+....+...|.+++.++.  ++++.+|.++|++++++
T Consensus       129 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  179 (409)
T 4eu1_A          129 ANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDK  179 (409)
T ss_dssp             SSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHh
Confidence            34556777788889999999999999999997  45689999999999975

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=81.93  E-value=0.93  Score=34.15  Aligned_cols=44  Identities=11%  Similarity=0.007  Sum_probs=38.1

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE   58 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~   58 (119)
                      .|++++..|.+...++...|..++.++.++ ++.+|++.|++++.
T Consensus        84 ~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~  128 (418)
T 2c81_A           84 EVIVPSLTWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAIT  128 (418)
T ss_dssp             EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCC
T ss_pred             EEEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhC
Confidence            467788999999999999999999999886 78999999987764

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=81.89  E-value=2.3  Score=32.64  Aligned_cols=44  Identities=16%  Similarity=0.107  Sum_probs=37.0

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .|++.+..|.+...++...|.+++.+|.++++ ++++.|++++..
T Consensus       166 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~  209 (448)
T 3aow_A          166 IVVVEAPTYLAALQAFNFYEPQYIQIPLDDEG-MKVEILEEKLKE  209 (448)
T ss_dssp             EEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHH
T ss_pred             EEEEeCCChHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHhh
Confidence            45667778888888888999999999998765 999999999874

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=81.82  E-value=1.5  Score=36.63  Aligned_cols=45  Identities=20%  Similarity=0.249  Sum_probs=37.4

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCCC-----ccc-----CHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDS-----YKL-----RGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~-----~~m-----~~~~L~~~i~~   59 (119)
                      .|++++..|.|+..++...|..++.++.+.+     +.+     +++.|++++++
T Consensus       247 ~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~  301 (755)
T 2vyc_A          247 VVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISE  301 (755)
T ss_dssp             EEEEESSCCHHHHHHHHHHCCEEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHH
T ss_pred             EEEECCCchHHHHHHHHHcCCEEEEEeCCCCccccccccCcCCCCHHHHHHHHHh
Confidence            4678899999999999999999888887643     346     99999999976

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=81.76  E-value=1.4  Score=31.94  Aligned_cols=45  Identities=22%  Similarity=0.227  Sum_probs=37.5

Q ss_pred             eeeecCCccccHHHH--HhccCceeEEeecCCCcccCHHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERA--GLLGGVTIRGLPADDSYKLRGDALEAAIEED   60 (119)
Q Consensus        15 vv~~s~~~H~S~~ka--~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~   60 (119)
                      .+++++..|.+...+  +...|.+++.+|.+ ++.+|++.|++.+.+.
T Consensus        92 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~  138 (359)
T 1svv_A           92 AVIATQLGHISTHETGAIEATGHKVVTAPCP-DGKLRVADIESALHEN  138 (359)
T ss_dssp             EEEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSCCCHHHHHHHHHHS
T ss_pred             EEEEcccchHHHHHHHHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHH
Confidence            577788889988874  67789999999986 7899999999998753

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=81.44  E-value=0.46  Score=34.86  Aligned_cols=44  Identities=16%  Similarity=-0.037  Sum_probs=37.7

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE   58 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~   58 (119)
                      .|++++..|.+...++...|..++.++.++++.+|++.|++++.
T Consensus        76 ~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~  119 (375)
T 2fnu_A           76 EIITTPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLIN  119 (375)
T ss_dssp             EEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCC
T ss_pred             EEEECCCccHhHHHHHHHCCCEEEEeccCCCCCCCHHHHHhhcC
Confidence            57788999999999999999999999998777888888877664

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=81.40  E-value=1.2  Score=32.54  Aligned_cols=44  Identities=14%  Similarity=0.192  Sum_probs=37.8

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE   58 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~   58 (119)
                      .+++++..|.+...++...|..++.+|.++++.+|++.|++++.
T Consensus       110 ~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~  153 (363)
T 3ffh_A          110 NTVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAID  153 (363)
T ss_dssp             EEEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCC
T ss_pred             EEEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhcc
Confidence            45566778888989999999999999999889999999998874

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=81.18  E-value=4.4  Score=30.34  Aligned_cols=44  Identities=11%  Similarity=0.042  Sum_probs=35.1

Q ss_pred             ccEEeecCcchHHHHHHh----cCceeEEeecCC-CCCcCHHHHHHHHH
Q psy9815          66 IPFYVNQAHSSVERAGLL----GGVTIRGLPADD-SYKLRGDALEAAIE  109 (119)
Q Consensus        66 ~p~~v~~t~gst~~~a~~----~g~~~~~v~~d~-~~~m~~~~L~~~i~  109 (119)
                      ..++....|.++..+...    .|.+++.|+.++ ++.+|.++|+++++
T Consensus       125 ~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~  173 (432)
T 3a9z_A          125 HFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVR  173 (432)
T ss_dssp             EEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCC
T ss_pred             eEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhcc
Confidence            456677788888666543    588999999986 78999999998875

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=81.14  E-value=4.4  Score=29.82  Aligned_cols=45  Identities=16%  Similarity=0.110  Sum_probs=37.7

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeec--CCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPA--DDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~--d~~~~m~~~~L~~~i~~   59 (119)
                      .+++.+-.|.+....+...|..+..+|.  ++++.+|++.|++++.+
T Consensus       123 ~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  169 (397)
T 3fsl_A          123 GVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKT  169 (397)
T ss_dssp             CEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTT
T ss_pred             eEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHh
Confidence            4566778888888888889999999988  56799999999998864

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=81.05  E-value=1.9  Score=32.31  Aligned_cols=44  Identities=16%  Similarity=-0.044  Sum_probs=37.4

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE   58 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~   58 (119)
                      .+++++..|.+...++...|..++.+|.++ ++.++++.|++++.
T Consensus       105 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~  149 (399)
T 2oga_A          105 EVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAIT  149 (399)
T ss_dssp             EEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCC
T ss_pred             EEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcC
Confidence            466777889999999999999999999886 58899999988764

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=80.93  E-value=4.6  Score=30.21  Aligned_cols=45  Identities=9%  Similarity=-0.171  Sum_probs=39.1

Q ss_pred             CCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815          64 GKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  109 (119)
Q Consensus        64 g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~  109 (119)
                      |-.+++..-++......+...|.+++.++.++++ +|+++|+++++
T Consensus       124 gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~  168 (423)
T 3ez1_A          124 TPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSDG-PDVDAVERLAG  168 (423)
T ss_dssp             CCEEEEEESCCHHHHHHHHHHTCEEEEEEEETTE-ECHHHHHHHHH
T ss_pred             CCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCCC-CCHHHHHHHHh
Confidence            3567777888889999999999999999998775 99999999995

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=80.93  E-value=2.9  Score=31.20  Aligned_cols=59  Identities=14%  Similarity=0.134  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC------------CCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD------------SYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~------------~~~m~~~~L~~~i~  109 (119)
                      +++..++......|-.+++..-++.+....+...|.+++.++.++            ++.+|.++|+++++
T Consensus       102 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~  172 (422)
T 3fvs_A          102 GALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT  172 (422)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCC
T ss_pred             HHHHHHHHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcC
Confidence            344455554445566677788889899999999999999999875            45799999998775

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=80.87  E-value=1.4  Score=32.57  Aligned_cols=44  Identities=20%  Similarity=0.222  Sum_probs=36.9

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE   58 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~   58 (119)
                      .+++++..|.+...++...|..++.+|.++  .+.++++.|++++.
T Consensus       113 ~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~  158 (389)
T 1gd9_A          113 EVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT  158 (389)
T ss_dssp             EEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC
T ss_pred             EEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcC
Confidence            466778889999999999999999999875  46789999988774

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=80.83  E-value=6.4  Score=29.22  Aligned_cols=46  Identities=11%  Similarity=0.050  Sum_probs=39.9

Q ss_pred             CccEEeecCcchHHHHHHhcCce-eEEeecC--CCCCcCHHHHHHHHHH
Q psy9815          65 KIPFYVNQAHSSVERAGLLGGVT-IRGLPAD--DSYKLRGDALEAAIEE  110 (119)
Q Consensus        65 ~~p~~v~~t~gst~~~a~~~g~~-~~~v~~d--~~~~m~~~~L~~~i~~  110 (119)
                      -.+++..-++.....++...|.+ ++.++.+  +++.+|.++|++++++
T Consensus       131 d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~  179 (412)
T 1ajs_A          131 TPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN  179 (412)
T ss_dssp             SCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHH
T ss_pred             CeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHh
Confidence            56777888899999999999999 9999984  6788999999999975

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=80.65  E-value=2.7  Score=31.04  Aligned_cols=60  Identities=18%  Similarity=0.099  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHhCC-----CccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKG-----KIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g-----~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L~~~i~~  110 (119)
                      +++..++......|     -.+++..-++.....++...|.+++.++.+++ +.+|.++|++++.+
T Consensus       102 ~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~  167 (396)
T 3jtx_A          102 EALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWK  167 (396)
T ss_dssp             HHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH
T ss_pred             HHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhcc
Confidence            44555555544444     36677788888899999999999999998654 46899999998865

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=80.58  E-value=3.1  Score=31.21  Aligned_cols=60  Identities=13%  Similarity=0.075  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  110 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~~  110 (119)
                      +++..++......|-.+++..-++.....++...|.+++.++.++ .+.+|.++|+++++.
T Consensus       120 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~  180 (404)
T 2o1b_A          120 NGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIID  180 (404)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhcc
Confidence            345555554444565677778888889999999999999999876 456899999998863

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=80.47  E-value=2.5  Score=30.71  Aligned_cols=45  Identities=11%  Similarity=0.073  Sum_probs=38.3

Q ss_pred             ccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          66 IPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        66 ~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      .+++..-++.....++...|.+++.++.++++.++.++|++++++
T Consensus       100 ~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~  144 (361)
T 3ftb_A          100 KILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKIDD  144 (361)
T ss_dssp             EEEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHTTT
T ss_pred             cEEEecCChHHHHHHHHHcCCeEEEeecCcccCCCHHHHHHhccC
Confidence            356667788888889999999999999998889999999988754

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=80.38  E-value=2.1  Score=32.64  Aligned_cols=59  Identities=14%  Similarity=0.131  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC------------CCCcCHHHHHHHHH
Q psy9815          51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD------------SYKLRGDALEAAIE  109 (119)
Q Consensus        51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~------------~~~m~~~~L~~~i~  109 (119)
                      +++..++......|-.+++..-++.+....+...|.+++.++.++            ++.+|.+.|++++.
T Consensus       129 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  199 (447)
T 3b46_A          129 EGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT  199 (447)
T ss_dssp             HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC
T ss_pred             HHHHHHHHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc
Confidence            455555555555666778888889999999999999999999864            46899999998874

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=80.33  E-value=8.2  Score=28.70  Aligned_cols=45  Identities=11%  Similarity=0.054  Sum_probs=37.7

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeec--CCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPA--DDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~--d~~~~m~~~~L~~~i~~   59 (119)
                      .|+..+-.|.+....+...|.+++.+|.  ++++.+|++.|++++++
T Consensus       133 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  179 (409)
T 4eu1_A          133 RIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDK  179 (409)
T ss_dssp             EEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHH
T ss_pred             EEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHh
Confidence            4566778888888889999999999987  45689999999999865

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=80.06  E-value=4.6  Score=29.88  Aligned_cols=49  Identities=8%  Similarity=-0.011  Sum_probs=40.8

Q ss_pred             hCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHHH
Q psy9815          62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE  110 (119)
Q Consensus        62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~~  110 (119)
                      ..|-.+++..-++......+...|.+++.++.+  +++.+|.+.|++++++
T Consensus       121 ~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  171 (401)
T 7aat_A          121 KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISK  171 (401)
T ss_dssp             TTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT
T ss_pred             cCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHh
Confidence            446667777788899999999999999999975  4789999999988875

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=80.03  E-value=1.2  Score=33.68  Aligned_cols=44  Identities=18%  Similarity=0.028  Sum_probs=37.8

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE   58 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~   58 (119)
                      .|++++..|.+...++...|..++.++.++ ++.+|++.|++++.
T Consensus        92 ~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~  136 (424)
T 2po3_A           92 EVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVT  136 (424)
T ss_dssp             EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCC
T ss_pred             EEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhC
Confidence            467788889999999999999999999886 78899999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d1js3a_	476	c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)	2e-14
d1js3a_	476	c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)	2e-09
d1pmma_	450	c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {	1e-05

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 65.6 bits (159), Expect = 2e-14
 Identities = 34/76 (44%), Positives = 47/76 (61%)

Query: 1   AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
           A P      ++  LV Y SDQAHSSVERAGL+GGV ++ +P+D  + +R  AL+ A+E D
Sbjct: 170 ASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERD 229

Query: 61  LKKGKIPFYVNQAHSS 76
              G IPF+V     +
Sbjct: 230 KAAGLIPFFVVATLGT 245

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 51.4 bits (122), Expect = 2e-09
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 9   DIIANLVGYCSDQAHSSVERAG--LLGGVTIRGLPA-----DDSYKLRGDALEAAIEEDL 61
           D +  ++              G  + G  +   L A         +    A     +  +
Sbjct: 120 DWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAV 179

Query: 62  KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119
            +  + +  +QAHSSVERAGL+GGV ++ +P+D  + +R  AL+ A+E D   G IPF
Sbjct: 180 LEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPF 237

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (94), Expect = 1e-05
 Identities = 7/72 (9%), Positives = 17/72 (23%), Gaps = 1/72 (1%)

Query: 1   AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE 59
                + +    +              +      V +R +P       +    +  A +E
Sbjct: 139 WRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDE 198

Query: 60  DLKKGKIPFYVN 71
           +       F V 
Sbjct: 199 NTIGVVPTFGVT 210

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.61
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	98.92
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	98.56
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	97.75
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	97.55
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	97.39
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	96.81
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	96.8
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	96.38
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	95.79
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	87.23
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	86.94
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	86.87
d1bh9b_	89	TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}	81.14
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	80.61

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.61  E-value=1.1e-16  Score=126.38  Aligned_cols=77  Identities=42%  Similarity=0.750  Sum_probs=71.0

Q ss_pred             CCccccccCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHH
Q psy9815           5 WKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAG   81 (119)
Q Consensus         5 ~~~~~~~~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a   81 (119)
                      +++....+++++|+|+++|||+.||++++|+.++.||+|++++||+++|+++++++.++|..|+++++++|||++|+
T Consensus       174 ~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~  250 (476)
T d1js3a_         174 LTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCS  250 (476)
T ss_dssp             CCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCC
T ss_pred             cccccccCceEEEecccccHHHHHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCcccee
Confidence            34444567899999999999999999999999999999999999999999999999999999999999999998765

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.92  E-value=4.3e-10  Score=88.13  Aligned_cols=55  Identities=47%  Similarity=0.866  Sum_probs=53.0

Q ss_pred             CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815          65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF  119 (119)
Q Consensus        65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~pf  119 (119)
                      ++.|++.++|.|+.|++.++|++++.|++|++|+||+++|+++|+++.++|+.||
T Consensus       183 ~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~  237 (476)
T d1js3a_         183 LVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPF  237 (476)
T ss_dssp             EEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             eEEEecccccHHHHHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcE
Confidence            5789999999999999999999999999999999999999999999999999986

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=6.8e-09  Score=80.56  Aligned_cols=64  Identities=9%  Similarity=0.048  Sum_probs=55.3

Q ss_pred             cCeeeeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHH
Q psy9815          12 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAG   81 (119)
Q Consensus        12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a   81 (119)
                      ....+|+|+++|+|+.|+|+++|+.++.||+++ +++||+++|++++.+      .+.++++++|||.+|+
T Consensus       150 ~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~------~t~~Vv~t~gtt~tG~  214 (450)
T d1pmma_         150 TDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDE------NTIGVVPTFGVTYTGN  214 (450)
T ss_dssp             CSCCEEEESSCCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCT------TEEEEECBBSCTTTCB
T ss_pred             CCCceEEecccHHHHHHHHHHcCCCceEeeecCCCCcCcHHHHHHHhhh------CceEEEeeeeeccCCC
Confidence            345678889999999999999999999999986 699999999998865      3688999999987764

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=5e-06  Score=62.66  Aligned_cols=64  Identities=13%  Similarity=0.024  Sum_probs=50.1

Q ss_pred             CeeeeecCCccccHHHHHhccCceeEEe---ecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHH
Q psy9815          13 NLVGYCSDQAHSSVERAGLLGGVTIRGL---PADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVE   78 (119)
Q Consensus        13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v---~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~   78 (119)
                      +-.+++|+.+|+|+.||+..+|+..+.|   ++++++.||+++|++++++...++  +.+++.+++++.
T Consensus       140 ~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~--~~~v~~~~~~~~  206 (445)
T d3bc8a1         140 AKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEH--ILCLHSTTACFA  206 (445)
T ss_dssp             CCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGG--EEEEEEESSCCT
T ss_pred             CCEEEEcCcccHHHHHHHHHcCCeeEEEEeeccCcccccCHHHHHHHHHhccccC--eEEEEEeCCCCC
Confidence            3467889999999999999999976666   457889999999999998875543  455666665543

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.55  E-value=6.6e-05  Score=56.28  Aligned_cols=64  Identities=20%  Similarity=0.207  Sum_probs=50.9

Q ss_pred             cCeeeeecCCccccHHHHHhccCceeEEe---ecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcch
Q psy9815          12 ANLVGYCSDQAHSSVERAGLLGGVTIRGL---PADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSS   76 (119)
Q Consensus        12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v---~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gs   76 (119)
                      ++-.+++|..+|+|+.|++...|+..+.|   +.++++.+|+++|+++++++...+.+++ ++.++++
T Consensus       155 ~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~-v~~~~~~  221 (434)
T d2z67a1         155 GSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPC-VLSTLTF  221 (434)
T ss_dssp             CCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEE-EEEESSC
T ss_pred             cCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceE-EEeccCc
Confidence            56778999999999999999999875555   4567899999999999999877766654 4444443

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=4.4e-05  Score=58.58  Aligned_cols=47  Identities=13%  Similarity=0.139  Sum_probs=41.6

Q ss_pred             CccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHHHH
Q psy9815          65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEED  111 (119)
Q Consensus        65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~~~  111 (119)
                      ...+++.++|.|..|+|+++|++++.|++++ +|+||+++|+++|+++
T Consensus       152 ~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~~  199 (450)
T d1pmma_         152 KPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDEN  199 (450)
T ss_dssp             CCEEEESSCCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTT
T ss_pred             CceEEecccHHHHHHHHHHcCCCceEeeecCCCCcCcHHHHHHHhhhC
Confidence            4567778999999999999999999999986 5999999999998754

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.81  E-value=0.00096  Score=49.66  Aligned_cols=57  Identities=21%  Similarity=0.317  Sum_probs=48.5

Q ss_pred             hCCCccEEeecCcchHHHHHHhcCceeEEee---cCCCCCcCHHHHHHHHHHHHhCCCCC
Q psy9815          62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLP---ADDSYKLRGDALEAAIEEDLKKGKIP  118 (119)
Q Consensus        62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~---~d~~~~m~~~~L~~~i~~~~~~G~~p  118 (119)
                      ..+...+++..+|.|+.+++.+.|++.+.|+   .++++.+|+++|+++|+++...|.++
T Consensus       154 ~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~  213 (434)
T d2z67a1         154 YGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRP  213 (434)
T ss_dssp             HCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCE
T ss_pred             hcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCCce
Confidence            3566788999999999999999999777665   47779999999999999998877654

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.0012  Score=49.09  Aligned_cols=53  Identities=19%  Similarity=0.127  Sum_probs=44.3

Q ss_pred             hCCCccEEeecCcchHHHHHHhcCceeEEee---cCCCCCcCHHHHHHHHHHHHhC
Q psy9815          62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLP---ADDSYKLRGDALEAAIEEDLKK  114 (119)
Q Consensus        62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~---~d~~~~m~~~~L~~~i~~~~~~  114 (119)
                      ..+-.++++...|.|+.+++.++|++.+.|+   .+++++||+++|+++|+++...
T Consensus       138 ~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~  193 (445)
T d3bc8a1         138 PKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPE  193 (445)
T ss_dssp             TTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGG
T ss_pred             CCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeeccCcccccCHHHHHHHHHhcccc
Confidence            3445677788899999999999999877774   5788999999999999987544

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.38  E-value=0.0041  Score=44.32  Aligned_cols=56  Identities=23%  Similarity=0.338  Sum_probs=45.1

Q ss_pred             eeeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHHHHHhCCCccEEe
Q psy9815          15 VGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEEDLKKGKIPFYV   70 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~~~~~~g~~p~~v   70 (119)
                      .|++++..|+|+..++...|.++..+|.++  ++.++++.|++.+.+..+.+...+++
T Consensus        88 ~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~  145 (364)
T d2e7ja1          88 WVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLAL  145 (364)
T ss_dssp             EEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEE
T ss_pred             EEEeecccccccchHHHhccceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEE
Confidence            466789999999999999999999999864  68999999999998865544333333

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.79  E-value=0.013  Score=41.53  Aligned_cols=82  Identities=21%  Similarity=0.227  Sum_probs=60.1

Q ss_pred             HHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHH
Q psy9815          29 AGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEA  106 (119)
Q Consensus        29 a~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~  106 (119)
                      .|.++|..-..+ +..    -.+++..++......|-.+++...+|.|+-.++...|.++..+|.+  +++.+|++.|++
T Consensus        56 ~A~~~g~e~~~~-t~g----~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~  130 (364)
T d2e7ja1          56 LPKFLGCDVARV-TNG----AREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQ  130 (364)
T ss_dssp             HHHHTTSSEEEE-ESS----HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHH
T ss_pred             HHHHhCcCEEEE-ECc----HHHHHHHHHHHHhCCCcEEEeecccccccchHHHhccceEEEeeeccccccccCHHHHHh
Confidence            466777743223 221    1244455555555677778888999999999999999999999985  468999999999


Q ss_pred             HHHHHHhCC
Q psy9815         107 AIEEDLKKG  115 (119)
Q Consensus       107 ~i~~~~~~G  115 (119)
                      .|++..+.+
T Consensus       131 ~i~~~~k~~  139 (364)
T d2e7ja1         131 TIEETKKRG  139 (364)
T ss_dssp             HHHHHTTTS
T ss_pred             hhhhhcccC
Confidence            998876543

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.23  E-value=0.65  Score=32.63  Aligned_cols=77  Identities=17%  Similarity=0.083  Sum_probs=58.3

Q ss_pred             HHHhccCce-eEEeecCCCcccCHHHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHH
Q psy9815          28 RAGLLGGVT-IRGLPADDSYKLRGDALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDAL  104 (119)
Q Consensus        28 ka~~~~G~~-~~~v~~d~~~~m~~~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L  104 (119)
                      +-+...|.. ...+   .+|   ..+|.-++... ...|-.+++..-++.++..+....|...+.++++++ +.||++.|
T Consensus        39 ~la~~~g~~~ai~~---~sg---t~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai~~~g~~pv~~d~~~~~~~~d~~~l  112 (376)
T d1mdoa_          39 AFCRLTGNQYAVAV---SSA---TAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHI  112 (376)
T ss_dssp             HHHHHHCCSEEEEE---SCH---HHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHH
T ss_pred             HHHHHHCcCeEEEe---CCH---HHHHHHHHHHhCCCCCCEEEEecccccccccchhccccceeeecccccccCCCHHHH
Confidence            345667764 4444   233   35666666654 456777899999999999999999999999999864 88999999


Q ss_pred             HHHHHH
Q psy9815         105 EAAIEE  110 (119)
Q Consensus       105 ~~~i~~  110 (119)
                      +++|..
T Consensus       113 ~~~i~~  118 (376)
T d1mdoa_         113 EAAITP  118 (376)
T ss_dssp             HHHCCT
T ss_pred             HHhcCC
Confidence            998753

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.94  E-value=0.47  Score=33.53  Aligned_cols=50  Identities=18%  Similarity=0.216  Sum_probs=38.9

Q ss_pred             HhCCCccEEeecCcchHHHHHHhc---CceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          61 LKKGKIPFYVNQAHSSVERAGLLG---GVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        61 ~~~g~~p~~v~~t~gst~~~a~~~---g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      ..+|-..+.....+++.......+   |++++.||+++++++|.++++++|.+
T Consensus        86 ~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~  138 (376)
T d1eg5a_          86 EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE  138 (376)
T ss_dssp             TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT
T ss_pred             cccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcCC
Confidence            345556666777777777655555   89999999999999999999998754

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=86.87  E-value=0.95  Score=32.07  Aligned_cols=50  Identities=24%  Similarity=0.217  Sum_probs=41.2

Q ss_pred             HhCCCccEEeecCcchHHHHHHh---cCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815          61 LKKGKIPFYVNQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE  110 (119)
Q Consensus        61 ~~~g~~p~~v~~t~gst~~~a~~---~g~~~~~v~~d~~~~m~~~~L~~~i~~  110 (119)
                      ...|-.+++....|+++....+.   -|++++.++.++++.+|.++++++|..
T Consensus        90 ~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~~  142 (391)
T d1p3wa_          90 QKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRD  142 (391)
T ss_dssp             GGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCT
T ss_pred             cCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHHHhCCC
Confidence            35677888889999988765554   489999999999999999999998853

>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.14  E-value=0.93  Score=26.75  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=23.4

Q ss_pred             CCCCCcCHHHHHHHHHHHHhCCCCC
Q psy9815          94 DDSYKLRGDALEAAIEEDLKKGKIP  118 (119)
Q Consensus        94 d~~~~m~~~~L~~~i~~~~~~G~~p  118 (119)
                      ++.+.+.+..|++++++...+|.+|
T Consensus        65 ~e~~PL~P~HireA~rrl~~~g~~p   89 (89)
T d1bh9b_          65 GEMPPLQPKHMREAVRRLKSKGQIP   89 (89)
T ss_dssp             TCCSSCCHHHHHHHHHHHHHTTCCC
T ss_pred             ccCCCCCcHHHHHHHHHHHHcCCCC
Confidence            4678999999999999999999998

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.61  E-value=0.35  Score=34.24  Aligned_cols=45  Identities=18%  Similarity=0.251  Sum_probs=33.3

Q ss_pred             eeeecCCccccHHHHHh---ccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815          15 VGYCSDQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEE   59 (119)
Q Consensus        15 vv~~s~~~H~S~~ka~~---~~G~~~~~v~~d~~~~m~~~~L~~~i~~   59 (119)
                      .++.+..-|++......   --|..++.||++.++++|.+.+++++.+
T Consensus        91 ~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~  138 (376)
T d1eg5a_          91 TIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE  138 (376)
T ss_dssp             EEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT
T ss_pred             ccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcCC
Confidence            44455565666554443   3489999999999999999999888744